Query 002153
Match_columns 959
No_of_seqs 692 out of 6008
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 17:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 5.9E-53 1.3E-57 536.6 60.2 451 427-953 283-733 (919)
2 PRK10841 hybrid sensory kinase 100.0 5.4E-51 1.2E-55 513.1 54.3 437 420-953 430-867 (924)
3 PRK15347 two component system 100.0 7.8E-44 1.7E-48 453.2 69.5 377 424-863 385-811 (921)
4 PRK11091 aerobic respiration c 100.0 4.1E-46 8.8E-51 465.9 41.3 370 428-864 274-645 (779)
5 TIGR02956 TMAO_torS TMAO reduc 100.0 1.8E-44 3.8E-49 461.5 47.7 372 423-863 450-822 (968)
6 PRK10618 phosphotransfer inter 100.0 3.6E-44 7.8E-49 445.6 44.0 303 421-793 434-736 (894)
7 KOG0519 Sensory transduction h 100.0 5.6E-48 1.2E-52 473.9 8.7 716 225-952 4-732 (786)
8 PRK11466 hybrid sensory histid 100.0 1.8E-42 3.8E-47 440.6 46.1 373 418-863 425-799 (914)
9 PRK09959 hybrid sensory histid 100.0 5.5E-39 1.2E-43 419.3 44.5 383 417-863 692-1075(1197)
10 PRK13837 two-component VirA-li 100.0 3.3E-36 7.1E-41 378.1 50.2 365 435-864 448-814 (828)
11 COG5002 VicK Signal transducti 100.0 2.1E-39 4.6E-44 342.9 17.4 227 433-713 221-451 (459)
12 PRK09303 adaptive-response sen 100.0 2.7E-35 5.8E-40 338.2 32.1 244 414-712 128-379 (380)
13 COG2205 KdpD Osmosensitive K+ 100.0 1.2E-35 2.7E-40 345.4 28.3 224 432-713 655-882 (890)
14 PRK11006 phoR phosphate regulo 100.0 4.7E-32 1E-36 316.4 28.8 220 436-711 203-424 (430)
15 PRK10604 sensor protein RstB; 100.0 5.1E-31 1.1E-35 308.1 35.0 228 423-712 198-425 (433)
16 PRK13557 histidine kinase; Pro 100.0 6.1E-30 1.3E-34 305.6 43.9 366 436-863 162-534 (540)
17 PRK10815 sensor protein PhoQ; 100.0 5.3E-30 1.1E-34 303.1 36.8 222 429-711 258-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 2.2E-30 4.7E-35 305.0 30.3 214 436-710 275-494 (494)
19 PRK10549 signal transduction h 100.0 2.2E-29 4.9E-34 296.1 35.5 235 422-712 225-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 2.7E-29 5.7E-34 315.6 32.3 222 433-712 660-884 (895)
21 PRK10364 sensor protein ZraS; 100.0 1E-28 2.2E-33 290.5 35.2 213 436-712 236-450 (457)
22 PRK10755 sensor protein BasS/P 100.0 1.2E-28 2.6E-33 280.3 34.4 226 423-711 123-351 (356)
23 COG4191 Signal transduction hi 100.0 2.1E-26 4.6E-31 261.9 50.0 212 437-710 384-601 (603)
24 PRK09835 sensor kinase CusS; P 100.0 4.2E-28 9.2E-33 286.4 36.9 231 423-710 248-480 (482)
25 TIGR01386 cztS_silS_copS heavy 100.0 2.5E-28 5.3E-33 285.8 34.1 229 423-709 227-457 (457)
26 TIGR03785 marine_sort_HK prote 100.0 3.7E-28 7.9E-33 298.7 36.1 229 425-709 473-703 (703)
27 COG3852 NtrB Signal transducti 100.0 7.3E-29 1.6E-33 260.4 24.0 222 435-712 130-356 (363)
28 PRK09470 cpxA two-component se 100.0 1.3E-27 2.8E-32 280.5 36.7 231 423-712 229-459 (461)
29 COG4251 Bacteriophytochrome (l 100.0 2E-28 4.2E-33 276.9 25.2 235 421-714 508-745 (750)
30 PRK09467 envZ osmolarity senso 100.0 2.2E-27 4.7E-32 276.9 34.1 222 421-711 213-434 (435)
31 PRK10337 sensor protein QseC; 100.0 3.4E-27 7.3E-32 276.6 34.0 225 423-708 223-449 (449)
32 TIGR02966 phoR_proteo phosphat 100.0 1.3E-27 2.9E-32 266.5 27.3 217 437-708 114-333 (333)
33 PRK11100 sensory histidine kin 100.0 3.1E-26 6.8E-31 269.2 34.8 218 437-711 256-474 (475)
34 PRK11073 glnL nitrogen regulat 100.0 1.2E-26 2.6E-31 262.7 27.6 217 436-710 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 5.4E-25 1.2E-29 242.9 30.6 217 436-712 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 6.6E-25 1.4E-29 264.7 29.8 214 436-712 389-603 (607)
37 PF03924 CHASE: CHASE domain; 99.9 1.4E-25 3.1E-30 233.4 15.1 186 157-350 2-193 (193)
38 TIGR02916 PEP_his_kin putative 99.9 9.3E-24 2E-28 260.3 28.8 203 436-709 474-679 (679)
39 PRK13560 hypothetical protein; 99.9 5.2E-24 1.1E-28 267.0 24.3 209 425-712 593-805 (807)
40 PRK11086 sensory histidine kin 99.9 5.5E-22 1.2E-26 237.7 23.1 194 438-712 340-537 (542)
41 PRK11644 sensory histidine kin 99.9 5.6E-21 1.2E-25 226.5 30.3 195 434-710 299-494 (495)
42 COG5000 NtrY Signal transducti 99.9 1.7E-21 3.7E-26 220.7 21.6 211 436-710 485-708 (712)
43 PRK15053 dpiB sensor histidine 99.9 5.5E-21 1.2E-25 229.8 25.6 197 440-712 341-541 (545)
44 COG3614 Predicted periplasmic 99.9 1.7E-20 3.7E-25 198.8 24.6 228 84-319 10-247 (348)
45 COG4192 Signal transduction hi 99.8 2.2E-19 4.7E-24 196.6 25.2 212 438-710 452-666 (673)
46 PF02518 HATPase_c: Histidine 99.8 3.7E-19 8.1E-24 168.0 13.5 109 548-710 1-110 (111)
47 PRK13559 hypothetical protein; 99.8 2.6E-18 5.7E-23 195.8 21.3 186 436-711 169-360 (361)
48 PRK10935 nitrate/nitrite senso 99.7 1.9E-16 4.1E-21 191.3 26.2 192 440-711 363-560 (565)
49 COG3290 CitA Signal transducti 99.7 1.3E-16 2.8E-21 181.7 22.7 192 441-712 337-533 (537)
50 PRK10600 nitrate/nitrite senso 99.7 3.4E-15 7.3E-20 180.9 27.0 183 448-711 373-557 (569)
51 KOG0519 Sensory transduction h 99.6 3.5E-15 7.6E-20 184.7 15.0 400 427-862 376-784 (786)
52 PRK10547 chemotaxis protein Ch 99.6 8.9E-14 1.9E-18 167.8 24.6 144 512-712 345-525 (670)
53 PRK04184 DNA topoisomerase VI 99.5 2.1E-13 4.6E-18 159.2 17.1 116 547-712 31-154 (535)
54 smart00387 HATPase_c Histidine 99.4 4E-12 8.6E-17 117.3 14.2 109 548-710 1-110 (111)
55 PRK09581 pleD response regulat 99.3 1.3E-10 2.8E-15 136.2 19.7 206 740-953 4-220 (457)
56 PF00512 HisKA: His Kinase A ( 99.2 3.3E-11 7.1E-16 103.4 9.0 66 436-501 1-68 (68)
57 TIGR01052 top6b DNA topoisomer 99.2 5E-11 1.1E-15 138.1 13.1 111 546-709 22-139 (488)
58 PRK14868 DNA topoisomerase VI 99.2 8.4E-11 1.8E-15 139.9 15.2 129 528-711 21-160 (795)
59 COG3452 Predicted periplasmic 99.2 3.9E-09 8.4E-14 110.2 23.1 185 84-321 14-200 (297)
60 cd00075 HATPase_c Histidine ki 99.2 2E-10 4.4E-15 104.1 12.2 71 636-708 33-103 (103)
61 PRK14867 DNA topoisomerase VI 99.2 1.2E-10 2.6E-15 138.6 13.4 77 636-712 72-151 (659)
62 TIGR01925 spIIAB anti-sigma F 99.1 4.1E-10 8.8E-15 110.5 12.3 98 548-708 35-136 (137)
63 PRK03660 anti-sigma F factor; 99.0 1.9E-09 4.2E-14 106.9 13.1 101 549-712 36-140 (146)
64 COG0643 CheA Chemotaxis protei 99.0 2.7E-08 5.8E-13 121.2 24.7 124 529-711 411-574 (716)
65 COG3851 UhpB Signal transducti 99.0 2.2E-07 4.8E-12 100.8 26.4 192 436-709 302-493 (497)
66 COG4585 Signal transduction hi 99.0 2.2E-07 4.7E-12 106.7 28.4 112 527-710 254-365 (365)
67 COG3920 Signal transduction hi 99.0 2.9E-07 6.3E-12 97.8 25.8 194 436-712 18-217 (221)
68 COG3706 PleD Response regulato 98.9 1.1E-08 2.4E-13 116.9 13.7 177 767-954 17-199 (435)
69 COG0745 OmpR Response regulato 98.9 4.3E-09 9.4E-14 112.4 9.3 65 888-954 2-66 (229)
70 COG2972 Predicted signal trans 98.8 9.4E-07 2E-11 104.4 27.7 66 636-712 386-454 (456)
71 COG0784 CheY FOG: CheY-like re 98.8 1.3E-08 2.8E-13 97.9 9.4 68 885-953 4-73 (130)
72 COG3850 NarQ Signal transducti 98.8 1.4E-06 2.9E-11 99.9 26.3 185 442-710 374-568 (574)
73 PRK04069 serine-protein kinase 98.7 1.3E-07 2.8E-12 95.7 13.9 104 549-713 39-146 (161)
74 COG4753 Response regulator con 98.7 2.3E-08 5E-13 115.0 7.5 65 888-953 3-70 (475)
75 COG3437 Response regulator con 98.6 5.7E-08 1.2E-12 106.6 7.9 68 886-954 14-81 (360)
76 COG3275 LytS Putative regulato 98.5 2E-05 4.3E-10 89.1 24.2 128 509-712 416-553 (557)
77 COG2204 AtoC Response regulato 98.5 3.6E-07 7.7E-12 105.5 9.1 65 887-952 5-69 (464)
78 COG4564 Signal transduction hi 98.5 5.1E-05 1.1E-09 82.0 24.2 183 448-711 262-448 (459)
79 KOG0787 Dehydrogenase kinase [ 98.5 1.8E-05 3.8E-10 87.2 21.2 148 509-710 215-380 (414)
80 TIGR01924 rsbW_low_gc serine-p 98.5 1.7E-06 3.7E-11 87.4 12.7 101 550-711 40-144 (159)
81 PF00072 Response_reg: Respons 98.4 6E-07 1.3E-11 83.9 7.3 64 889-953 1-65 (112)
82 smart00388 HisKA His Kinase A 98.4 1E-06 2.2E-11 73.4 7.7 64 437-500 2-65 (66)
83 PRK11466 hybrid sensory histid 98.3 9.2E-07 2E-11 113.6 9.2 69 885-953 680-748 (914)
84 PRK11091 aerobic respiration c 98.3 1.1E-06 2.4E-11 110.9 9.6 68 885-953 524-591 (779)
85 PRK15347 two component system 98.3 1.5E-06 3.3E-11 111.6 9.6 67 886-953 690-756 (921)
86 COG2197 CitB Response regulato 98.3 2.2E-06 4.8E-11 90.6 8.9 66 888-954 2-69 (211)
87 PLN03029 type-a response regul 98.3 2.2E-06 4.8E-11 91.4 9.0 68 886-953 8-94 (222)
88 PF14501 HATPase_c_5: GHKL dom 98.3 1.4E-05 3.1E-10 74.1 12.8 94 549-710 2-99 (100)
89 COG2201 CheB Chemotaxis respon 98.3 1.8E-06 4E-11 96.1 7.9 65 887-952 2-68 (350)
90 TIGR02956 TMAO_torS TMAO reduc 98.3 1.9E-06 4.1E-11 111.4 9.2 68 885-953 701-768 (968)
91 COG3947 Response regulator con 98.1 3.2E-06 6.9E-11 90.0 6.1 64 888-952 2-65 (361)
92 COG4565 CitB Response regulato 98.1 7.3E-06 1.6E-10 84.2 7.7 64 888-952 2-67 (224)
93 PRK10046 dpiA two-component re 98.1 1.1E-05 2.5E-10 85.9 9.3 66 887-953 5-72 (225)
94 COG0745 OmpR Response regulato 98.1 2.8E-05 6.1E-10 83.3 11.8 118 739-865 1-119 (229)
95 PF00072 Response_reg: Respons 98.1 3.1E-05 6.7E-10 72.2 10.6 110 741-858 1-111 (112)
96 PRK11173 two-component respons 98.0 1.6E-05 3.5E-10 84.9 9.7 66 887-953 4-69 (237)
97 PRK13856 two-component respons 98.0 1.8E-05 3.9E-10 84.9 9.3 66 887-953 2-67 (241)
98 PRK10529 DNA-binding transcrip 98.0 2.1E-05 4.6E-10 82.9 9.5 65 888-953 3-67 (225)
99 PRK12555 chemotaxis-specific m 98.0 1.7E-05 3.7E-10 90.0 9.1 65 888-953 2-68 (337)
100 PRK10701 DNA-binding transcrip 98.0 2.4E-05 5.3E-10 83.6 9.3 65 888-953 3-67 (240)
101 PRK10816 DNA-binding transcrip 97.9 2.8E-05 6E-10 82.0 9.2 65 888-953 2-66 (223)
102 PRK10766 DNA-binding transcrip 97.9 3.5E-05 7.7E-10 81.0 9.5 66 887-953 3-68 (221)
103 PRK09468 ompR osmolarity respo 97.9 3.6E-05 7.8E-10 82.1 9.7 67 886-953 5-71 (239)
104 cd00082 HisKA Histidine Kinase 97.9 3.4E-05 7.4E-10 63.5 7.5 62 436-497 3-65 (65)
105 TIGR00585 mutl DNA mismatch re 97.9 6.2E-05 1.3E-09 84.6 11.9 97 551-707 21-125 (312)
106 PRK15029 arginine decarboxylas 97.9 2E-05 4.4E-10 96.9 8.1 66 888-953 2-79 (755)
107 PRK10955 DNA-binding transcrip 97.9 3.8E-05 8.3E-10 81.2 9.4 64 888-953 3-66 (232)
108 PRK14084 two-component respons 97.9 3.4E-05 7.4E-10 83.1 9.1 65 888-953 2-68 (246)
109 PRK09959 hybrid sensory histid 97.9 2.3E-05 5E-10 103.7 9.3 67 886-953 958-1024(1197)
110 TIGR02154 PhoB phosphate regul 97.9 4.1E-05 8.9E-10 80.3 9.3 66 887-953 3-68 (226)
111 PRK09836 DNA-binding transcrip 97.9 4.4E-05 9.6E-10 80.7 9.3 65 888-953 2-66 (227)
112 PRK11697 putative two-componen 97.9 3.4E-05 7.3E-10 82.6 8.5 66 887-953 2-69 (238)
113 PRK10643 DNA-binding transcrip 97.9 4.4E-05 9.5E-10 79.9 9.2 66 888-954 2-67 (222)
114 PRK10161 transcriptional regul 97.9 4.6E-05 9.9E-10 80.7 9.3 66 887-953 3-68 (229)
115 TIGR02875 spore_0_A sporulatio 97.9 3.9E-05 8.4E-10 83.7 8.8 66 887-953 3-70 (262)
116 PRK00742 chemotaxis-specific m 97.8 5.2E-05 1.1E-09 86.7 9.3 66 887-953 4-71 (354)
117 COG4566 TtrR Response regulato 97.8 8.2E-05 1.8E-09 75.2 9.1 66 887-953 5-70 (202)
118 PRK11517 transcriptional regul 97.8 7.1E-05 1.5E-09 78.6 9.3 65 888-953 2-66 (223)
119 PRK15115 response regulator Gl 97.8 6.2E-05 1.3E-09 88.8 9.6 66 887-953 6-71 (444)
120 TIGR03787 marine_sort_RR prote 97.8 8.2E-05 1.8E-09 78.5 9.3 67 887-954 1-69 (227)
121 PRK10336 DNA-binding transcrip 97.8 8E-05 1.7E-09 77.9 9.1 65 888-953 2-66 (219)
122 PRK10365 transcriptional regul 97.8 7.1E-05 1.5E-09 88.1 9.6 66 887-953 6-71 (441)
123 PRK10923 glnG nitrogen regulat 97.8 7.7E-05 1.7E-09 88.6 9.8 66 887-953 4-69 (469)
124 PRK10430 DNA-binding transcrip 97.8 7.3E-05 1.6E-09 80.5 8.7 66 888-953 3-71 (239)
125 COG2204 AtoC Response regulato 97.8 0.00017 3.7E-09 83.7 11.9 118 739-864 5-122 (464)
126 COG1389 DNA topoisomerase VI, 97.7 0.00017 3.8E-09 81.2 11.3 144 549-749 33-185 (538)
127 PRK11361 acetoacetate metaboli 97.7 8.5E-05 1.8E-09 87.9 9.7 67 886-953 4-70 (457)
128 PRK11083 DNA-binding response 97.7 0.00016 3.6E-09 75.9 9.5 66 887-953 4-69 (228)
129 TIGR01387 cztR_silR_copR heavy 97.6 0.00015 3.3E-09 75.6 8.7 65 889-954 1-65 (218)
130 CHL00148 orf27 Ycf27; Reviewed 97.6 0.0002 4.3E-09 76.1 9.6 66 887-953 7-72 (240)
131 PRK09390 fixJ response regulat 97.6 0.00022 4.8E-09 72.8 9.7 66 887-953 4-69 (202)
132 TIGR01818 ntrC nitrogen regula 97.6 0.00013 2.9E-09 86.4 8.6 64 889-953 1-64 (463)
133 PRK09958 DNA-binding transcrip 97.6 0.00019 4E-09 74.4 8.6 65 888-953 2-67 (204)
134 PRK10710 DNA-binding transcrip 97.6 0.00027 5.8E-09 75.1 9.7 66 887-953 11-76 (240)
135 PF13581 HATPase_c_2: Histidin 97.6 0.00055 1.2E-08 65.8 11.0 93 549-707 28-124 (125)
136 COG0784 CheY FOG: CheY-like re 97.6 0.00095 2.1E-08 63.8 12.3 118 737-861 4-123 (130)
137 PRK13558 bacterio-opsin activa 97.5 0.00014 2.9E-09 90.4 7.7 66 887-953 8-73 (665)
138 PLN03029 type-a response regul 97.5 0.00075 1.6E-08 72.1 11.8 118 737-859 7-143 (222)
139 PRK10360 DNA-binding transcrip 97.5 0.00033 7.1E-09 72.0 8.9 65 888-953 3-69 (196)
140 PRK10100 DNA-binding transcrip 97.5 0.00025 5.5E-09 75.3 7.6 61 886-950 10-71 (216)
141 PRK09483 response regulator; P 97.5 0.00036 7.7E-09 73.0 8.6 65 888-953 3-69 (217)
142 PRK15411 rcsA colanic acid cap 97.5 0.00037 8.1E-09 73.6 8.6 65 888-953 2-71 (207)
143 PRK10841 hybrid sensory kinase 97.5 0.00059 1.3E-08 87.6 11.9 119 736-862 799-917 (924)
144 PRK09935 transcriptional regul 97.4 0.00057 1.2E-08 70.8 9.3 66 887-953 4-71 (210)
145 PRK10840 transcriptional regul 97.4 0.0005 1.1E-08 72.6 8.7 66 887-953 4-74 (216)
146 PRK15479 transcriptional regul 97.4 0.00071 1.5E-08 70.7 9.1 66 888-954 2-67 (221)
147 PRK09191 two-component respons 97.3 0.00076 1.6E-08 73.2 9.2 67 886-953 137-205 (261)
148 PRK11107 hybrid sensory histid 97.3 0.0013 2.7E-08 84.8 12.6 122 736-864 665-787 (919)
149 TIGR02915 PEP_resp_reg putativ 97.3 0.00061 1.3E-08 80.4 8.1 62 889-953 1-67 (445)
150 PRK13435 response regulator; P 97.2 0.0013 2.8E-08 64.6 9.0 67 886-953 5-73 (145)
151 COG3437 Response regulator con 97.2 0.0014 3E-08 72.8 9.3 114 738-858 14-129 (360)
152 COG4567 Response regulator con 97.2 0.0013 2.9E-08 64.0 7.9 65 887-952 10-74 (182)
153 PRK09581 pleD response regulat 97.1 0.0013 2.7E-08 77.2 9.3 65 888-953 4-68 (457)
154 PRK10610 chemotaxis regulatory 97.1 0.0029 6.2E-08 58.6 9.4 67 887-954 6-73 (129)
155 PRK13557 histidine kinase; Pro 97.0 0.0021 4.5E-08 77.1 9.4 69 885-953 414-483 (540)
156 PRK10403 transcriptional regul 97.0 0.0027 5.8E-08 65.7 8.8 66 887-953 7-74 (215)
157 COG3706 PleD Response regulato 96.9 0.0055 1.2E-07 70.8 11.6 118 738-862 132-250 (435)
158 TIGR02154 PhoB phosphate regul 96.9 0.0098 2.1E-07 62.2 12.3 121 738-864 2-122 (226)
159 PRK15369 two component system 96.9 0.0037 8E-08 64.1 8.9 66 887-953 4-71 (211)
160 PRK10651 transcriptional regul 96.9 0.0034 7.3E-08 65.1 8.6 66 887-953 7-74 (216)
161 TIGR01818 ntrC nitrogen regula 96.9 0.0039 8.6E-08 73.9 10.3 155 741-910 1-155 (463)
162 PRK10161 transcriptional regul 96.9 0.011 2.4E-07 62.4 12.4 119 739-863 3-121 (229)
163 COG3707 AmiR Response regulato 96.8 0.0016 3.5E-08 66.4 5.6 66 887-953 6-72 (194)
164 PRK10955 DNA-binding transcrip 96.8 0.011 2.3E-07 62.4 12.1 116 739-864 2-117 (232)
165 COG4566 TtrR Response regulato 96.8 0.0071 1.5E-07 61.5 9.4 119 739-865 5-123 (202)
166 smart00448 REC cheY-homologous 96.8 0.0068 1.5E-07 45.9 7.5 54 888-942 2-55 (55)
167 PRK13837 two-component VirA-li 96.8 0.004 8.6E-08 79.5 9.7 67 885-953 696-763 (828)
168 PRK10643 DNA-binding transcrip 96.7 0.037 8.1E-07 57.7 15.0 118 739-864 1-118 (222)
169 COG4565 CitB Response regulato 96.7 0.0079 1.7E-07 62.3 9.3 115 740-862 2-118 (224)
170 PRK09468 ompR osmolarity respo 96.7 0.018 3.9E-07 61.3 12.6 119 738-864 5-123 (239)
171 PRK11173 two-component respons 96.7 0.017 3.6E-07 61.6 12.1 117 739-864 4-120 (237)
172 PRK09836 DNA-binding transcrip 96.6 0.012 2.7E-07 61.9 10.8 118 739-864 1-118 (227)
173 PRK00095 mutL DNA mismatch rep 96.6 0.0091 2E-07 73.3 10.9 88 552-699 22-115 (617)
174 TIGR02875 spore_0_A sporulatio 96.6 0.019 4.1E-07 62.5 12.2 120 739-864 3-124 (262)
175 PRK10430 DNA-binding transcrip 96.6 0.014 3.1E-07 62.7 11.0 116 739-860 2-119 (239)
176 PRK10816 DNA-binding transcrip 96.5 0.014 3.1E-07 61.3 10.6 118 739-864 1-118 (223)
177 COG4753 Response regulator con 96.5 0.0077 1.7E-07 70.2 9.0 115 740-864 3-122 (475)
178 PRK10336 DNA-binding transcrip 96.5 0.018 3.9E-07 60.0 11.1 117 739-863 1-117 (219)
179 PRK10529 DNA-binding transcrip 96.5 0.058 1.3E-06 56.6 15.0 116 739-863 2-117 (225)
180 PRK10766 DNA-binding transcrip 96.5 0.027 5.9E-07 59.0 12.2 116 739-863 3-118 (221)
181 cd00156 REC Signal receiver do 96.5 0.01 2.2E-07 52.2 7.6 63 890-953 1-63 (113)
182 PRK10618 phosphotransfer inter 96.4 0.0038 8.2E-08 79.6 6.3 56 884-947 687-742 (894)
183 COG2172 RsbW Anti-sigma regula 96.4 0.028 6.2E-07 55.9 11.0 90 549-701 37-131 (146)
184 PRK11517 transcriptional regul 96.4 0.03 6.6E-07 58.5 12.1 116 739-863 1-116 (223)
185 PRK10701 DNA-binding transcrip 96.4 0.024 5.3E-07 60.4 11.4 116 740-864 3-118 (240)
186 PRK10046 dpiA two-component re 96.4 0.02 4.3E-07 61.0 10.6 117 738-862 4-122 (225)
187 PRK10840 transcriptional regul 96.4 0.034 7.5E-07 58.6 12.1 121 738-863 3-125 (216)
188 PRK11083 DNA-binding response 96.4 0.042 9.1E-07 57.5 12.8 118 739-864 4-121 (228)
189 PRK12555 chemotaxis-specific m 96.3 0.066 1.4E-06 60.8 15.0 117 739-862 1-128 (337)
190 COG3279 LytT Response regulato 96.3 0.0077 1.7E-07 65.3 7.0 66 888-954 3-70 (244)
191 PRK13856 two-component respons 96.3 0.032 6.9E-07 59.7 11.6 117 740-864 3-119 (241)
192 CHL00148 orf27 Ycf27; Reviewed 96.3 0.044 9.6E-07 58.0 12.5 117 738-863 6-122 (240)
193 TIGR03787 marine_sort_RR prote 96.3 0.047 1E-06 57.4 12.5 118 740-863 2-119 (227)
194 PRK15115 response regulator Gl 96.2 0.02 4.3E-07 67.6 10.2 118 738-863 5-122 (444)
195 PRK10365 transcriptional regul 96.2 0.02 4.3E-07 67.5 9.9 118 738-863 5-122 (441)
196 PRK10923 glnG nitrogen regulat 96.1 0.027 5.8E-07 67.0 10.9 117 739-863 4-120 (469)
197 PRK09958 DNA-binding transcrip 96.1 0.037 8E-07 57.1 10.5 117 739-863 1-118 (204)
198 PRK11475 DNA-binding transcrip 96.1 0.012 2.5E-07 62.2 6.6 54 899-953 3-62 (207)
199 COG2197 CitB Response regulato 96.0 0.05 1.1E-06 57.7 11.3 117 740-864 2-120 (211)
200 PRK00742 chemotaxis-specific m 95.9 0.44 9.6E-06 54.5 19.2 106 738-850 3-110 (354)
201 PRK14084 two-component respons 95.9 0.051 1.1E-06 58.4 10.9 115 739-863 1-117 (246)
202 PRK09483 response regulator; P 95.8 0.058 1.3E-06 56.2 10.6 118 739-864 2-121 (217)
203 PRK10610 chemotaxis regulatory 95.8 0.16 3.4E-06 46.7 12.3 119 738-862 5-124 (129)
204 PRK13435 response regulator; P 95.7 0.15 3.3E-06 49.7 12.4 115 738-863 5-120 (145)
205 COG3947 Response regulator con 95.7 0.061 1.3E-06 58.2 9.8 114 739-862 1-114 (361)
206 COG4567 Response regulator con 95.7 0.1 2.2E-06 51.3 10.4 113 740-861 11-124 (182)
207 TIGR01387 cztR_silR_copR heavy 95.6 0.06 1.3E-06 55.9 9.7 116 741-864 1-116 (218)
208 PRK11361 acetoacetate metaboli 95.5 0.058 1.2E-06 63.9 10.3 118 738-863 4-121 (457)
209 PRK11697 putative two-componen 95.5 0.12 2.5E-06 55.2 11.5 114 739-863 2-117 (238)
210 PRK15479 transcriptional regul 95.5 0.099 2.2E-06 54.4 10.7 117 739-863 1-117 (221)
211 PF13589 HATPase_c_3: Histidin 95.4 0.011 2.3E-07 58.3 2.9 68 638-710 35-107 (137)
212 PRK10710 DNA-binding transcrip 95.4 0.15 3.3E-06 53.8 11.9 116 739-863 11-126 (240)
213 PRK09191 two-component respons 95.3 0.19 4.2E-06 54.3 12.6 115 739-863 138-253 (261)
214 PRK05559 DNA topoisomerase IV 95.2 0.038 8.3E-07 67.8 7.3 105 543-708 26-147 (631)
215 TIGR02915 PEP_resp_reg putativ 95.0 0.13 2.7E-06 60.8 10.8 116 741-863 1-118 (445)
216 PRK09390 fixJ response regulat 94.9 0.13 2.9E-06 52.1 9.6 117 739-863 4-120 (202)
217 PRK10360 DNA-binding transcrip 94.9 0.15 3.3E-06 52.0 9.9 114 739-863 2-117 (196)
218 PRK09935 transcriptional regul 94.6 0.26 5.6E-06 50.8 10.9 118 739-864 4-123 (210)
219 cd00156 REC Signal receiver do 93.7 0.49 1.1E-05 41.2 9.4 111 742-860 1-111 (113)
220 TIGR01055 parE_Gneg DNA topois 93.3 0.11 2.4E-06 63.7 5.7 50 638-687 63-124 (625)
221 PRK15369 two component system 93.1 0.66 1.4E-05 47.2 10.5 118 738-863 3-122 (211)
222 PRK10651 transcriptional regul 93.0 0.64 1.4E-05 47.9 10.4 118 738-863 6-125 (216)
223 PRK10403 transcriptional regul 92.7 0.87 1.9E-05 46.8 10.8 117 739-863 7-125 (215)
224 PRK13558 bacterio-opsin activa 92.6 0.32 6.9E-06 60.5 8.6 116 739-862 8-125 (665)
225 PRK05644 gyrB DNA gyrase subun 92.6 0.2 4.4E-06 61.6 6.6 35 543-577 26-65 (638)
226 TIGR01059 gyrB DNA gyrase, B s 92.5 0.18 3.9E-06 62.4 6.1 35 543-577 19-58 (654)
227 COG3707 AmiR Response regulato 92.4 0.45 9.8E-06 49.0 7.6 117 737-863 4-122 (194)
228 PRK10100 DNA-binding transcrip 92.3 0.62 1.3E-05 49.6 9.2 117 738-864 10-127 (216)
229 PRK15411 rcsA colanic acid cap 92.3 1.2 2.6E-05 47.0 11.4 117 740-864 2-123 (207)
230 PRK15029 arginine decarboxylas 91.7 0.99 2.1E-05 56.5 11.1 84 739-824 1-93 (755)
231 PRK05218 heat shock protein 90 91.4 0.6 1.3E-05 57.4 8.7 58 638-699 74-143 (613)
232 PRK14083 HSP90 family protein; 90.1 0.26 5.7E-06 60.0 4.0 57 638-698 64-127 (601)
233 PF06490 FleQ: Flagellar regul 89.9 2 4.4E-05 40.5 9.1 107 740-861 1-107 (109)
234 COG2201 CheB Chemotaxis respon 89.3 0.85 1.8E-05 51.6 6.9 60 739-800 2-63 (350)
235 PTZ00130 heat shock protein 90 88.9 0.54 1.2E-05 58.5 5.5 47 638-684 136-193 (814)
236 smart00448 REC cheY-homologous 86.8 3.9 8.6E-05 29.9 7.5 51 740-792 2-52 (55)
237 COG5381 Uncharacterized protei 86.5 1.8 4E-05 42.2 6.3 28 553-580 64-91 (184)
238 smart00433 TOP2c Topoisomerase 85.8 0.83 1.8E-05 56.0 4.6 48 638-685 34-93 (594)
239 PRK11475 DNA-binding transcrip 85.5 4.4 9.6E-05 42.8 9.4 110 752-865 4-116 (207)
240 PTZ00272 heat shock protein 83 85.2 0.84 1.8E-05 56.5 4.3 21 637-657 72-92 (701)
241 COG0323 MutL DNA mismatch repa 83.1 1.4 3.1E-05 54.3 5.0 27 638-664 54-80 (638)
242 PRK14939 gyrB DNA gyrase subun 79.1 1.5 3.3E-05 54.8 3.3 35 543-577 25-65 (756)
243 TIGR01058 parE_Gpos DNA topois 77.4 2.1 4.4E-05 52.9 3.8 50 638-687 67-128 (637)
244 COG0326 HtpG Molecular chapero 76.7 3.2 7E-05 50.2 5.0 47 637-683 74-131 (623)
245 TIGR03321 alt_F1F0_F0_B altern 68.1 1.8E+02 0.004 31.5 17.4 19 549-567 191-209 (246)
246 PF06490 FleQ: Flagellar regul 62.7 12 0.00026 35.3 4.7 34 888-921 1-34 (109)
247 PLN03237 DNA topoisomerase 2; 61.6 12 0.00026 49.8 5.9 55 638-692 112-178 (1465)
248 PHA02569 39 DNA topoisomerase 57.6 4.8 0.0001 49.4 1.2 52 638-689 80-145 (602)
249 COG3279 LytT Response regulato 57.1 47 0.001 36.0 8.7 111 739-860 2-115 (244)
250 COG0512 PabA Anthranilate/para 55.6 20 0.00043 37.2 5.1 51 887-938 2-52 (191)
251 cd05212 NAD_bind_m-THF_DH_Cycl 51.6 56 0.0012 32.3 7.5 41 884-924 26-70 (140)
252 PF06295 DUF1043: Protein of u 50.1 66 0.0014 31.3 7.6 58 89-148 2-59 (128)
253 PF03602 Cons_hypoth95: Conser 49.7 23 0.00049 36.7 4.6 53 887-939 66-122 (183)
254 KOG1979 DNA mismatch repair pr 48.7 21 0.00044 42.7 4.4 26 638-663 58-83 (694)
255 COG4122 Predicted O-methyltran 46.3 65 0.0014 34.4 7.4 53 888-941 86-142 (219)
256 KOG1977 DNA mismatch repair pr 45.7 38 0.00082 41.4 5.9 44 636-679 49-98 (1142)
257 PF07568 HisKA_2: Histidine ki 44.6 1.4E+02 0.0029 26.2 8.0 72 444-524 2-73 (76)
258 PLN03128 DNA topoisomerase 2; 41.0 36 0.00078 44.9 5.4 50 638-687 87-148 (1135)
259 PTZ00108 DNA topoisomerase 2-l 40.7 23 0.00051 47.2 3.6 51 638-688 95-157 (1388)
260 PF11044 TMEMspv1-c74-12: Plec 39.2 1.8E+02 0.0039 22.8 6.6 31 385-415 4-34 (49)
261 PRK10693 response regulator of 39.0 59 0.0013 36.3 6.2 88 767-862 2-90 (303)
262 PF01596 Methyltransf_3: O-met 38.9 87 0.0019 33.1 7.0 54 887-940 71-130 (205)
263 PRK14175 bifunctional 5,10-met 37.9 6.1E+02 0.013 28.3 17.5 148 738-921 34-193 (286)
264 COG5385 Uncharacterized protei 36.8 4.8E+02 0.01 26.6 16.7 121 440-577 18-139 (214)
265 PF14689 SPOB_a: Sensor_kinase 36.5 1E+02 0.0023 25.9 5.7 43 440-486 15-57 (62)
266 COG3105 Uncharacterized protei 35.7 2.6E+02 0.0057 27.2 8.7 23 387-409 6-28 (138)
267 COG3105 Uncharacterized protei 34.9 2.5E+02 0.0054 27.4 8.4 53 93-145 15-72 (138)
268 PRK14188 bifunctional 5,10-met 34.8 7E+02 0.015 28.0 16.5 144 738-917 34-189 (296)
269 PRK14176 bifunctional 5,10-met 33.9 7.1E+02 0.015 27.8 15.6 59 884-944 162-220 (287)
270 COG4999 Uncharacterized domain 33.9 1.6E+02 0.0034 28.3 6.9 114 733-858 6-121 (140)
271 PTZ00109 DNA gyrase subunit b; 33.7 8.1 0.00017 48.9 -2.0 17 638-654 162-178 (903)
272 COG0187 GyrB Type IIA topoisom 33.7 10 0.00022 45.9 -1.1 49 639-687 70-130 (635)
273 COG0742 N6-adenine-specific me 33.3 1.4E+02 0.0029 31.2 7.1 56 887-942 67-125 (187)
274 PF10087 DUF2325: Uncharacteri 33.2 1.2E+02 0.0026 27.7 6.2 51 888-940 1-57 (97)
275 PRK02261 methylaspartate mutas 33.0 1.4E+02 0.003 29.3 7.0 57 886-943 3-66 (137)
276 PF10090 DUF2328: Uncharacteri 31.2 6.1E+02 0.013 26.2 19.1 169 454-697 3-174 (182)
277 PRK07649 para-aminobenzoate/an 31.2 63 0.0014 33.8 4.4 48 889-937 2-49 (195)
278 PRK14183 bifunctional 5,10-met 30.6 7.9E+02 0.017 27.4 15.0 59 883-943 154-212 (281)
279 PRK06231 F0F1 ATP synthase sub 30.3 6.7E+02 0.015 26.4 14.9 48 386-433 49-101 (205)
280 cd01424 MGS_CPS_II Methylglyox 29.9 2.6E+02 0.0056 26.0 8.0 33 920-953 57-91 (110)
281 PRK06774 para-aminobenzoate sy 29.6 69 0.0015 33.1 4.4 48 889-937 2-49 (191)
282 PRK13428 F0F1 ATP synthase sub 28.7 1E+03 0.022 28.4 14.4 58 392-449 8-70 (445)
283 PRK13566 anthranilate synthase 28.5 1.6E+02 0.0036 37.1 8.1 52 884-937 524-575 (720)
284 PRK10792 bifunctional 5,10-met 28.1 8.8E+02 0.019 27.1 15.4 169 738-942 35-213 (285)
285 PRK11677 hypothetical protein; 27.9 6E+02 0.013 25.1 10.4 11 475-485 74-84 (134)
286 PF01596 Methyltransf_3: O-met 27.7 1.7E+02 0.0037 30.9 6.9 56 738-793 70-130 (205)
287 COG4999 Uncharacterized domain 27.6 1.2E+02 0.0026 29.1 5.0 58 883-945 8-65 (140)
288 PRK15426 putative diguanylate 27.1 1.2E+03 0.025 28.2 28.4 57 93-149 30-86 (570)
289 PRK05637 anthranilate synthase 27.0 1.2E+02 0.0026 32.0 5.7 49 887-937 2-50 (208)
290 PRK10742 putative methyltransf 27.0 2.3E+02 0.005 30.9 7.8 59 885-945 109-178 (250)
291 PRK14471 F0F1 ATP synthase sub 26.9 6.6E+02 0.014 25.2 14.7 45 389-433 12-61 (164)
292 COG3452 Predicted periplasmic 26.5 3.4E+02 0.0075 29.8 8.8 64 86-149 11-78 (297)
293 PLN02335 anthranilate synthase 25.5 1.1E+02 0.0023 32.7 5.1 51 886-937 18-68 (222)
294 PF10669 Phage_Gp23: Protein g 25.4 5.3E+02 0.012 23.7 11.9 18 429-446 62-79 (121)
295 KOG1978 DNA mismatch repair pr 25.4 67 0.0014 39.4 3.7 65 845-909 251-316 (672)
296 PRK08007 para-aminobenzoate sy 25.4 89 0.0019 32.3 4.3 48 889-937 2-49 (187)
297 PRK11677 hypothetical protein; 25.0 4.5E+02 0.0098 25.9 8.7 57 92-150 9-65 (134)
298 PF07851 TMPIT: TMPIT-like pro 24.7 6.8E+02 0.015 28.5 11.2 78 414-493 7-88 (330)
299 cd05212 NAD_bind_m-THF_DH_Cycl 24.3 1.8E+02 0.004 28.7 6.1 41 735-775 25-69 (140)
300 PRK00811 spermidine synthase; 24.3 2E+02 0.0043 31.9 7.1 55 887-943 101-162 (283)
301 PF02882 THF_DHG_CYH_C: Tetrah 23.9 1.5E+02 0.0032 30.2 5.3 58 884-943 34-91 (160)
302 PF06305 DUF1049: Protein of u 23.5 3.8E+02 0.0083 22.4 7.2 13 123-135 53-65 (68)
303 cd01080 NAD_bind_m-THF_DH_Cycl 23.1 2.6E+02 0.0056 28.5 7.1 40 884-923 42-81 (168)
304 PLN02823 spermine synthase 23.1 2.1E+02 0.0045 32.7 7.0 55 887-943 128-188 (336)
305 PF03709 OKR_DC_1_N: Orn/Lys/A 23.0 1.6E+02 0.0035 27.9 5.2 41 900-940 7-47 (115)
306 PF06295 DUF1043: Protein of u 23.0 7E+02 0.015 24.2 9.9 15 472-486 67-81 (128)
307 PF01564 Spermine_synth: Sperm 23.0 1.4E+02 0.0031 32.3 5.5 58 887-946 101-165 (246)
308 PRK14182 bifunctional 5,10-met 22.7 1.1E+03 0.024 26.3 16.6 170 738-942 32-211 (282)
309 PRK13453 F0F1 ATP synthase sub 22.7 8.2E+02 0.018 24.9 14.7 40 392-431 25-69 (173)
310 TIGR00095 RNA methyltransferas 22.1 2.4E+02 0.0052 29.2 6.8 56 887-942 73-132 (189)
311 PRK03958 tRNA 2'-O-methylase; 22.0 7.3E+02 0.016 25.7 9.8 59 736-794 29-89 (176)
312 PRK15399 lysine decarboxylase 21.8 2.1E+02 0.0045 36.1 7.1 53 888-940 2-60 (713)
313 PRK14473 F0F1 ATP synthase sub 21.6 8.2E+02 0.018 24.5 14.8 25 387-411 10-34 (164)
314 PF00430 ATP-synt_B: ATP synth 21.4 7E+02 0.015 23.6 12.2 38 413-450 32-69 (132)
315 COG0421 SpeE Spermidine syntha 21.4 2.3E+02 0.0049 31.6 6.7 54 887-942 101-160 (282)
316 PRK14472 F0F1 ATP synthase sub 20.8 8.9E+02 0.019 24.6 14.8 17 412-428 50-66 (175)
317 PRK09174 F0F1 ATP synthase sub 20.8 1E+03 0.022 25.1 14.0 22 412-433 85-106 (204)
318 PRK00536 speE spermidine synth 20.5 2.6E+02 0.0057 30.7 6.9 59 888-952 96-159 (262)
319 PF00497 SBP_bac_3: Bacterial 20.5 3E+02 0.0065 27.9 7.3 127 657-791 9-159 (225)
320 PRK08476 F0F1 ATP synthase sub 20.3 8.3E+02 0.018 24.0 13.4 21 390-410 12-32 (141)
321 cd00532 MGS-like MGS-like doma 20.1 1.9E+02 0.0041 27.2 5.0 50 903-953 35-95 (112)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=5.9e-53 Score=536.57 Aligned_cols=451 Identities=36% Similarity=0.503 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q 002153 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506 (959)
Q Consensus 427 ~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~ 506 (959)
+++++++++.|++|++++||||||||++|.|+++++.....++.+++|++.+..++++|..+|+++++++|+++++..++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566677788999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeeccccc
Q 002153 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586 (959)
Q Consensus 507 ~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 586 (959)
..++++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888788999999999999999999999999998877754211
Q ss_pred chhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCC
Q 002153 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (959)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s 666 (959)
..+...+.|+|.|+|+|||++.++++|+||++.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235789999999999999999999999999988
Q ss_pred CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCC
Q 002153 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746 (959)
Q Consensus 667 ~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd 746 (959)
.++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++||
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888899999999999999999999999999999999999999964332110 111234577899999999
Q ss_pred chhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecC
Q 002153 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826 (959)
Q Consensus 747 ~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 826 (959)
++..+..+..+|+.+|+.+..+.+..+ + ....+|++++|..+........ ....++..... .+.++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLTM--LHERLAKAKSM-TDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHHH--HHHHHHhhhhc-CCcEEEEeCC
Confidence 999999999999999999999998877 2 2466899999987764432221 22222222122 2233333332
Q ss_pred CCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCEEEEEeCCHHHHHHHHHHH
Q 002153 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906 (959)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILivdDn~~~~~~l~~~L 906 (959)
...... ......|...++.||+....+...+............ . .......+.+|||||||+.++..+..+|
T Consensus 616 ~~~~~~-~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~------~-~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLA-EQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLL------P-PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhH-HHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccc------c-ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 222222 2222336778999999999998888765421111000 0 0011123568999999999999999999
Q ss_pred hhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 907 ~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+..|+.+.++.+|.+|++.+. ...||+||||+.||+|||+++|+..
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~l 733 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELI 733 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 999999999999999999985 5789999999999999999999754
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=5.4e-51 Score=513.13 Aligned_cols=437 Identities=30% Similarity=0.424 Sum_probs=343.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002153 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499 (959)
Q Consensus 420 ~~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skie 499 (959)
.++++++++++++++++|++|++++||||||||++|.|++++|.....+++++++++.+..++++|..+|+++++++|++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667778888899999999999999999999999999998888888889999999999999999999999999999
Q ss_pred cCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEE
Q 002153 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579 (959)
Q Consensus 500 sg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~ 579 (959)
++...++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++..
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~ 589 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRV 589 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999888888789999999999999999999999999988877643
Q ss_pred eecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCC
Q 002153 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (959)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (959)
. ...+.|+|.|||+|||++.++++|+|
T Consensus 590 ~-----------------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFep 616 (924)
T PRK10841 590 D-----------------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDP 616 (924)
T ss_pred e-----------------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcc
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 002153 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 739 (959)
Q Consensus 660 F~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 739 (959)
|++.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.
T Consensus 617 F~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~ 684 (924)
T PRK10841 617 FFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGK 684 (924)
T ss_pred cccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCC
Confidence 9998877777778999999999999999999999999999999999999986432211 1112345788
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
+++++++++.....+..+++++|+.+..+... .....++++.|...........
T Consensus 685 ~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~---------~~~~~d~~i~d~~~~~~~~~~~----------------- 738 (924)
T PRK10841 685 RCWLAVRNASLEQFLETLLQRSGIQVQRYEGQ---------EPTPEDVLITDDPVQKKWQGRA----------------- 738 (924)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCeEEEcccc---------cCCcCcEEEEcCccccccchhh-----------------
Confidence 99999999999999999999999999877632 1233456666643221110000
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCc-chhhhccCCCEEEEEeCCHHH
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVN 898 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILivdDn~~~ 898 (959)
.+.+.. ..... .........+.+|.....+...+.+...............+. ........+.+|||||||+.+
T Consensus 739 ~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~ 813 (924)
T PRK10841 739 VITFCR--RHIGI---PLEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPIN 813 (924)
T ss_pred hhhhhh--ccccC---hhhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHH
Confidence 000000 00000 000011123456777777777666665432211111111000 001112245799999999999
Q ss_pred HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 899 ~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+..+..+|++.||.|.++.||.+|++.+. ...||+||||++||+|||+++++..
T Consensus 814 ~~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~i 867 (924)
T PRK10841 814 RRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRL 867 (924)
T ss_pred HHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999995 5789999999999999999999754
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=7.8e-44 Score=453.20 Aligned_cols=377 Identities=30% Similarity=0.425 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002153 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (959)
Q Consensus 424 ~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l 503 (959)
.+.++++++++..|++|++++||||||||++|.|++++|.+...++.++++++.+..++++|..+++++++++|+|++.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~ 464 (921)
T PRK15347 385 AEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQM 464 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455566777788999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecc
Q 002153 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (959)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~ 583 (959)
.++..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 465 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~--- 541 (921)
T PRK15347 465 TLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH--- 541 (921)
T ss_pred cceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc---
Confidence 99999999999999999999999999999999998888888899999999999999999999999999988876421
Q ss_pred cccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 002153 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (959)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (959)
...+.|+|+|||+|||++.+++||+||+|.
T Consensus 542 --------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 571 (921)
T PRK15347 542 --------------------------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQA 571 (921)
T ss_pred --------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccC
Confidence 124789999999999999999999999986
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccc--------------------cc
Q 002153 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN--------------------SQ 723 (959)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~--------------------~~ 723 (959)
+. ..+|+||||+||+++++.|||+|+++|.+|+||+|+|++|+........... ..
T Consensus 572 ~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (921)
T PRK15347 572 DT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEPLKGELSAPLALHRQLSAWGITCQPG 647 (921)
T ss_pred CC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcccccccccchHHHHHHHHHcCCccccc
Confidence 53 3479999999999999999999999999999999999999864221110000 00
Q ss_pred ----------------------------cccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHH
Q 002153 724 ----------------------------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775 (959)
Q Consensus 724 ----------------------------~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al 775 (959)
.........+....++++|+|||++.++.+++..|+.+|++|..+.++.+|+
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al 727 (921)
T PRK15347 648 HQNPALLDPELAYLPGRLYDLLQQIIQGAPNEPVINLPLQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEAL 727 (921)
T ss_pred ccchhhcchhhhhcchHHHHHHHHHhhcCCCcccccCCCCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 0000001112223457999999999999999999999999999999999999
Q ss_pred HHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC--CCceEEEEecCCCcccccccCCCCCCCccccCCCChHH
Q 002153 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853 (959)
Q Consensus 776 ~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~ 853 (959)
+.+.. ..+|++++|..++..++. ..++.++..... ....+++++......... .....|+..++.||+....
T Consensus 728 ~~~~~--~~~dlil~D~~mp~~~G~---~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~-~~~~~G~~~~l~KP~~~~~ 801 (921)
T PRK15347 728 ELGRQ--HRFDLVLMDIRMPGLDGL---ETTQLWRDDPNNLDPDCMIVALTANAAPEEIH-RCKKAGMNHYLTKPVTLAQ 801 (921)
T ss_pred HHHhc--CCCCEEEEeCCCCCCCHH---HHHHHHHhchhhcCCCCcEEEEeCCCCHHHHH-HHHHCCCCEEEECCCCHHH
Confidence 98754 568999999988765533 344555543211 222233332222222222 2223378899999999999
Q ss_pred HHHHHHHHhc
Q 002153 854 LAASLQRAMG 863 (959)
Q Consensus 854 l~~~l~~~~~ 863 (959)
+...+.....
T Consensus 802 L~~~l~~~~~ 811 (921)
T PRK15347 802 LARALELAAE 811 (921)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 4
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=4.1e-46 Score=465.91 Aligned_cols=370 Identities=28% Similarity=0.418 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee
Q 002153 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507 (959)
Q Consensus 428 ~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~ 507 (959)
+++++++++|++|+++|||||||||++|.|+++++.+...+++++++++.+..+++++..++++++++++++++++.++.
T Consensus 274 ~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 353 (779)
T PRK11091 274 DALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDN 353 (779)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEe
Confidence 34455667889999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccc
Q 002153 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (959)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i 587 (959)
.++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|++....
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~------ 427 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE------ 427 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc------
Confidence 99999999999999999999999999999988888878899999999999999999999999998887764210
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcccc-CCC
Q 002153 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GPS 666 (959)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~-~~s 666 (959)
...+.|+|.|||+|||++.+++||+|||++ +.+
T Consensus 428 ----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~ 461 (779)
T PRK11091 428 ----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSH 461 (779)
T ss_pred ----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCC
Confidence 113789999999999999999999999998 555
Q ss_pred CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCC
Q 002153 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746 (959)
Q Consensus 667 ~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd 746 (959)
.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+......... .+........+.++|+|||
T Consensus 462 ~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILivdD 533 (779)
T PRK11091 462 GGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED--------AFDEDDMPLPALNILLVED 533 (779)
T ss_pred CCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc--------ccccccccccccceEEEcC
Confidence 56667899999999999999999999999999999999999999654322111 1111223345789999999
Q ss_pred chhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-ceEEEEec
Q 002153 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLAN 825 (959)
Q Consensus 747 ~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~ 825 (959)
++.++.+++..|+.+|+.|..++++.+|++.+. ...+|++++|..++..++ ....+.+++...... +.+++++.
T Consensus 534 ~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~--~~~~Dlvl~D~~mp~~~G---~e~~~~ir~~~~~~~~~~ii~~ta 608 (779)
T PRK11091 534 IELNVIVARSVLEKLGNSVDVAMTGKEALEMFD--PDEYDLVLLDIQLPDMTG---LDIARELRERYPREDLPPLVALTA 608 (779)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh--cCCCCEEEEcCCCCCCCH---HHHHHHHHhccccCCCCcEEEEEC
Confidence 999999999999999999999999999999886 356899999988876543 334566665442222 23333332
Q ss_pred CCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.... .... ....|+..++.||+....+..++.+.+..
T Consensus 609 ~~~~-~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 609 NVLK-DKKE-YLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CchH-hHHH-HHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 2221 2222 22347889999999999999999888753
No 5
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.8e-44 Score=461.51 Aligned_cols=372 Identities=33% Similarity=0.537 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (959)
....+.++++++++|++|++++||||||||++|.|++++|.+...++.+++|++.+..++++|..+++++++++++|.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~ 529 (968)
T TIGR02956 450 HAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGH 529 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456777888999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeec
Q 002153 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (959)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (959)
..++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...+.
T Consensus 530 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~ 609 (968)
T TIGR02956 530 LSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD 609 (968)
T ss_pred CeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC
Confidence 99999999999999999999999999999999999987788888999999999999999999999999998887753210
Q ss_pred ccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 002153 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (959)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (959)
..+.|+|.|+|+|||++.+++||+||++
T Consensus 610 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 637 (968)
T TIGR02956 610 ----------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQ 637 (968)
T ss_pred ----------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhc
Confidence 1178999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEE
Q 002153 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742 (959)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvL 742 (959)
.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+.......... ......+.+.++|
T Consensus 638 ~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~---------~~~~~~~~~~~iL 706 (968)
T TIGR02956 638 AD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSA---------TLTVIDLPPQRVL 706 (968)
T ss_pred cC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccccc---------ccccccccccceE
Confidence 87 345568999999999999999999999999999999999999997543221110 0012234567999
Q ss_pred EeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-ceEE
Q 002153 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLF 821 (959)
Q Consensus 743 vvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 821 (959)
+|||++.++.+++.+|+.+|+.|..+.++.+|++.+.. ..+|++++|..++..++ ....+.++....... ..++
T Consensus 707 vvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g---~~~~~~ir~~~~~~~~~pii 781 (968)
T TIGR02956 707 LVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDG---VTLLQQLRAIYGAKNEVKFI 781 (968)
T ss_pred EEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCH---HHHHHHHHhCccccCCCeEE
Confidence 99999999999999999999999999999999999865 67999999998766543 345566665433222 2333
Q ss_pred EEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 822 ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+++......... .....|+..++.||+....+...+...+.
T Consensus 782 ~lta~~~~~~~~-~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 782 AFSAHVFNEDVA-QYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EEECCCCHHHHH-HHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 333222222222 22234788999999999999999988774
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.6e-44 Score=445.62 Aligned_cols=303 Identities=18% Similarity=0.291 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002153 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (959)
Q Consensus 421 ~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (959)
+++.+++++++++.++|++|+++|||||||||++|.|+++++.+...+++++++++.+..++++|..+++++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566677788888999999999999999999999999999988777788899999999999999999999999999999
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEe
Q 002153 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (959)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (959)
|+..++..+|++.+++++++..+.+.+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766667789999999999999999999999999988776432
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 10 1134789999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCce
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 740 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r 740 (959)
++.+.+ .+..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+....... ....+..+.|.+
T Consensus 624 ~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~-----------~~~~~~~l~g~~ 691 (894)
T PRK10618 624 LNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEV-----------EEEEEKLLDGVT 691 (894)
T ss_pred ccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccc-----------cccccccCCCCE
Confidence 986442 34557999999999999999999999999999999999999995432111 011223467899
Q ss_pred EEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEecc
Q 002153 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793 (959)
Q Consensus 741 vLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~ 793 (959)
||+|||++.++.++..+|+++|+.|..+.+.. ....+|++++|.+
T Consensus 692 vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~--------~~~~~Dlvl~D~~ 736 (894)
T PRK10618 692 VLLDITSEEVRKIVTRQLENWGATCITPDERL--------ISQEYDIFLTDNP 736 (894)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc--------cCCCCCEEEECCC
Confidence 99999999999999999999999999988642 2356888888854
No 7
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-48 Score=473.93 Aligned_cols=716 Identities=32% Similarity=0.334 Sum_probs=510.6
Q ss_pred CcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCceeeeceeecccCCceeEEEEEeeccCCCCCCChhHHH-hh
Q 002153 225 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 303 (959)
Q Consensus 225 ~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~-~~ 303 (959)
.+|.|+++...+..+...+|...+.+++.+...++-+...+++.++....++..+...++.++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777776666555544553 33
Q ss_pred hcceeeeeeeHHHHHHHHHHHhhccceEEEeecccCCCCCceeccccccCCCCceEEEeecCCCcccccceeee--cccc
Q 002153 304 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 381 (959)
Q Consensus 304 ~~G~~~~~~~v~~l~~~ll~~~~~~~~i~v~v~d~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 381 (959)
...+-...++........+.....+......++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33455555666666655555555455555555555444445556666666666666666666666666666666 2333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhhcchhhhHHHHHHHHHH
Q 002153 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 459 (959)
Q Consensus 382 ~~~~~~~~~~~i~~l~i~~l~~~i~~~~~~r~~~l~~~~~~l~e~~~~ae~a~~aks~--Fla~iSHEIRTPL~~I~g~l 459 (959)
..+.+.++..............+.......|...++....++.+....++++...+++ |+++++||||+||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 3444444444444444444445566677777777777777777777788888888888 999999999999998 888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEec
Q 002153 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539 (959)
Q Consensus 460 elL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~ 539 (959)
..+.++..+.+++.+.+..+.++..+..++|+++|.+++++|..++...+|++..+++.+++.+.+.+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCcccccc
Q 002153 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (959)
Q Consensus 540 ~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (959)
+..|..+.+|+.+++||+.|+++||+|||..|++.++++..++......+.... ....+..+....+. .|.... .
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~--~~~~~~--~ 396 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDF--LQKMSH--A 396 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhH--HHHhcc--c
Confidence 988999999999999999999999999999999999998877644322111100 00000000000000 000000 0
Q ss_pred CCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhh-ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 002153 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (959)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~ 698 (959)
.+.................+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|+.|+++++++|+|.+.+.+..
T Consensus 397 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~ 476 (786)
T KOG0519|consen 397 MRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCI 476 (786)
T ss_pred cccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhh
Confidence 000000000111112345688999999999998888 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHH
Q 002153 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778 (959)
Q Consensus 699 g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l 778 (959)
..|++|+|++++....+.+....... .......+.|...++.+-+..+.++.+...+.+|..|++..+...++-..
T Consensus 477 ~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 552 (786)
T KOG0519|consen 477 SLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFL 552 (786)
T ss_pred ccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhc
Confidence 99999999999987655433221111 12233456677777777777666678888888899998887655555444
Q ss_pred hcCCCc-ccEEEEeccccccCccchHH---HHHHHHhcCCCC--CceEEEEecCCCcccccccCCCCCCCccccCCCChH
Q 002153 779 ASGSKI-INMILVEQEVWEKDTSVSTL---FVNNLRKLGCGF--QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852 (959)
Q Consensus 779 ~~~~~~-~~~ilid~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~ 852 (959)
...... ...+.++...+......... .....+.. ... .+..+.++.........+............+|....
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 631 (786)
T KOG0519|consen 553 DLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDL-TSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSL 631 (786)
T ss_pred ccccccchheEEeeeccccccCCCcchhhhhhhccccc-hhhcccccccccccchhhHHhhhcccccccccccCCccHHH
Confidence 333333 45666777776444322211 11111111 111 123333333322222222222222224455677777
Q ss_pred HHHHHHHHHhcC-CCCCCcccCCCCcchhhhccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCC
Q 002153 853 MLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931 (959)
Q Consensus 853 ~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~ 931 (959)
.+..+++...+. +..........+.......++|++|||||||.+|+++++.+|+++|++++++.+|.||++++.+++.
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~ 711 (786)
T KOG0519|consen 632 CLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHS 711 (786)
T ss_pred HHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCc
Confidence 777887777654 2222222112222224567789999999999999999999999999999999999999999987789
Q ss_pred ccEEEEcCCCCCCCHHHHHHH
Q 002153 932 FDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 932 ~DlilmDi~MP~mdG~e~~~~ 952 (959)
||+||||+|||+|||||+|+-
T Consensus 712 y~~ifmD~qMP~mDG~e~~~~ 732 (786)
T KOG0519|consen 712 YDVIFMDLQMPEMDGYEATRE 732 (786)
T ss_pred ccEEEEEcCCcccchHHHHHH
Confidence 999999999999999999974
No 8
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.8e-42 Score=440.57 Aligned_cols=373 Identities=30% Similarity=0.478 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002153 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (959)
Q Consensus 418 ~~~~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (959)
+...+..+.+.+.+++.++|++|++++||||||||++|.|++++|.+...++.++++++.+..++++|..++++++++++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~ 504 (914)
T PRK11466 425 ELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSA 504 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566777888899999999999999999999999999998888888999999999999999999999999999
Q ss_pred hhcCC--cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEE
Q 002153 498 VESGK--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (959)
Q Consensus 498 iesg~--l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v 575 (959)
++.+. ..++..+|++.+++++++..+...+..|++.+.+++++..|..+.+|+.+|+||+.||++||+||++.|.|.|
T Consensus 505 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i 584 (914)
T PRK11466 505 IEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVL 584 (914)
T ss_pred HhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99884 5677789999999999999999999999999999998888878999999999999999999999999998887
Q ss_pred EEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhh
Q 002153 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (959)
Q Consensus 576 ~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (959)
++... ...+.|.|.|||+|||++.+++
T Consensus 585 ~~~~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~ 611 (914)
T PRK11466 585 RSRTD-----------------------------------------------------GEQWLVEVEDSGCGIDPAKLAE 611 (914)
T ss_pred EEEEc-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHH
Confidence 76421 1246799999999999999999
Q ss_pred ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 002153 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (959)
Q Consensus 656 IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (959)
+|+||++.+ ...+|+||||+||+++++.|||+|.+.|.+|+||+|+|++|+......... ....+..
T Consensus 612 if~~f~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~---------~~~~~~~ 678 (914)
T PRK11466 612 IFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPK---------TVNQAVR 678 (914)
T ss_pred HhchhhcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccccc---------ccccccc
Confidence 999999853 245799999999999999999999999999999999999998654322111 0111223
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+.+||+|||++.++.++..+|+.+|+.|..+.++.+|+..+.. ..++|++++|..++..++. ..++.++...+
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~---~~~~~lr~~~~- 753 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGI---TLARQLAQQYP- 753 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHH---HHHHHHHhhCC-
Confidence 467899999999999999999999999999999999999998753 3468999999988765533 34555555321
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..|.+++.+.. ...... .....|+..++.||+....+...+.+.+.
T Consensus 754 ~~~ii~~t~~~-~~~~~~-~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 754 SLVLIGFSAHV-IDETLR-QRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCCEEEEeCCC-chhhHH-HHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 12444433322 221111 12233677899999999999999988774
No 9
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=5.5e-39 Score=419.32 Aligned_cols=383 Identities=26% Similarity=0.424 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002153 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQ 495 (959)
Q Consensus 417 ~~~~~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~-q~~~l~~i~~s~~~L~~lIndlLd~ 495 (959)
++..+++++.+++++++..++++|++++||||||||++|.|+++++.+...+.+ ..++++.+..+++++..++++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566667777889999999999999999999999999976655444 4578899999999999999999999
Q ss_pred HhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEE
Q 002153 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (959)
Q Consensus 496 skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v 575 (959)
++++++...+...++++.+++++++..+...+..+++.+.+......+..+.+|+.+|+||+.||++||+||++.|.+.+
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i 851 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKI 851 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999999998777
Q ss_pred EEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhh
Q 002153 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (959)
Q Consensus 576 ~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (959)
.+..... ..+...+.|+|.|+|+|||++.+++
T Consensus 852 ~~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~ 883 (1197)
T PRK09959 852 TTSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQ 883 (1197)
T ss_pred EEEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHH
Confidence 6542110 0112346799999999999999999
Q ss_pred ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 002153 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (959)
Q Consensus 656 IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (959)
||+||++.+. .+..+|+||||+|||+|++.|||+|+++|.+|+||+|+|++|+............ ...+ ...
T Consensus 884 iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~---~~~~---~~~ 955 (1197)
T PRK09959 884 LFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAK---AEQP---ITL 955 (1197)
T ss_pred hhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccc---cccc---ccc
Confidence 9999998644 2345799999999999999999999999999999999999998643221111000 0000 111
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
....++|+|||++..+..++.+|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+. ...+..++....
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g---~~~~~~i~~~~~- 1029 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDG---FELTRKLREQNS- 1029 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhcCC-
Confidence 245789999999999999999999999999999999999998854 56899999988765443 334555554321
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..|.+++.+. ........ ....|...++.||+....+...+.+...
T Consensus 1030 ~~pii~lt~~-~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1030 SLPIWGLTAN-AQANEREK-GLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCCEEEEECC-CCHHHHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 1244433322 22211112 2233788999999999999988877654
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.3e-36 Score=378.10 Aligned_cols=365 Identities=19% Similarity=0.287 Sum_probs=272.0
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (959)
++.++|++++||||||||++|.|+++++.+.. .+....++++.+..+++++..++++++++++...+ ...++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 35678999999999999999999999876543 34566789999999999999999999999996554 34579999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhh
Q 002153 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++. |.|.|++.......... .
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~-~--- 597 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV-L--- 597 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-c---
Confidence 9999999988753 45778888877654 3468899999999999999999999854 67777665321100000 0
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (959)
......+...+.|+|+|+|+|||++.+++||+||++.+. +
T Consensus 598 ----------------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~ 637 (828)
T PRK13837 598 ----------------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------G 637 (828)
T ss_pred ----------------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------C
Confidence 000111234688999999999999999999999996422 7
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhHHH
Q 002153 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 752 (959)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~ 752 (959)
|+||||+|||++++.|||+|++.|.+|+||+|+|++|........... ...+. ......|.+||+|||++..+.
T Consensus 638 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~-----~~~~~-~~~~~~~~~ILvVddd~~~~~ 711 (828)
T PRK13837 638 GTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQA-----FFGPG-PLPRGRGETVLLVEPDDATLE 711 (828)
T ss_pred CCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccc-----cCCCc-ccCCCCCCEEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999986533221110 00111 112246789999999999999
Q ss_pred HHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCCcccc
Q 002153 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832 (959)
Q Consensus 753 v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 832 (959)
.+...|+.+|+.+..+.++.++++.+......+|++++ .+...+ ....+..++... ....++++.........
T Consensus 712 ~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~---g~~l~~~l~~~~--~~ipIIvls~~~~~~~~ 784 (828)
T PRK13837 712 RYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLD---EEQAAAALHAAA--PTLPIILGGNSKTMALS 784 (828)
T ss_pred HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCC---HHHHHHHHHhhC--CCCCEEEEeCCCchhhh
Confidence 99999999999999999999999998776667899998 232222 233455555432 12223333332222222
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 833 ~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
... ...| ..++.||+....+...+...+..
T Consensus 785 ~~~-~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 785 PDL-LASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhH-hhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 222 2235 88999999999999999888754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-39 Score=342.91 Aligned_cols=227 Identities=27% Similarity=0.476 Sum_probs=197.8
Q ss_pred HHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 002153 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (959)
Q Consensus 433 a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~--q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (959)
.++.+..|.+++|||+||||+++.++++.|.+...... ...++..-+...++|.+++||+|.++|++....+++.+.+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34456789999999999999999999999998765444 5688999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhccCcE-EEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccch
Q 002153 511 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 588 (959)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~-l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~ 588 (959)
|+...+..++..|.....+..+. +.-+++ ..+.++..||+++-||+.|+++||+||+|.| .|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~p-~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDIP-KQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcCC-CCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 322333 3466788999999999999999999999875 666665421
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc
Q 002153 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (959)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s 668 (959)
..++.++|.|.|.|||++++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12478999999999999999999999999999999
Q ss_pred CcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 669 ~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
|+.|||||||+|+|.+|+.|||.||.+|..|+||+|+|++|+...
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 999999999999999999999999999999999999999998643
No 12
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.7e-35 Score=338.20 Aligned_cols=244 Identities=25% Similarity=0.382 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHHH
Q 002153 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 486 (959)
Q Consensus 414 ~~l~~~~~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-------~~q~~~l~~i~~s~~~L~ 486 (959)
.++.+...++.+.++++++..+++.+|++++||||||||++|.+.++++.+...+ ...+++++.+..+.+++.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666677899999999999999999999999999754332 225678899999999999
Q ss_pred HHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHh
Q 002153 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566 (959)
Q Consensus 487 ~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK 566 (959)
.++++++++++.+.+...++..++++.+++++++..+...+..+++.+.++++...| .+.+|+.+|+||+.||++||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998877665 5789999999999999999999
Q ss_pred ccCCC-cEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcC
Q 002153 567 FTEKG-HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645 (959)
Q Consensus 567 fT~~G-~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 645 (959)
|++.| .|.+.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 99764 555543210 1124789999999
Q ss_pred CCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 646 ~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+|||++.+++||+|||+.+. ++..+|+||||+||+++++.|||+|++.|.+++||+|+|++|..+
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 379 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVYR 379 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecCC
Confidence 99999999999999998765 445679999999999999999999999999999999999999853
No 13
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=345.37 Aligned_cols=224 Identities=24% Similarity=0.426 Sum_probs=195.1
Q ss_pred HHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCC--CChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE
Q 002153 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE--LDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (959)
Q Consensus 432 ~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~--l~~~-q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~ 508 (959)
+.++.++.|++++||||||||++|.|.++.|.... ++++ +.+.+..|.+.+.+|..+|+++||+.|+++|.++++..
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 45667899999999999999999999999987643 4444 67889999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc-EEEEEEEeecccccc
Q 002153 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDSI 587 (959)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~i 587 (959)
+..+.+++.+++........... +.+.++++.+ .+..|...++|||.||++||+||++.|. |.|.+...
T Consensus 735 ~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------- 804 (890)
T COG2205 735 WVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------- 804 (890)
T ss_pred hhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe-------
Confidence 99999999999987776555444 5666677665 5889999999999999999999998875 76666432
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 002153 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (959)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (959)
..+++|+|.|+|+|||++++++||++||+.++..
T Consensus 805 ----------------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~ 838 (890)
T COG2205 805 ----------------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKES 838 (890)
T ss_pred ----------------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC
Confidence 1357899999999999999999999999987633
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
. ..|+|||||||+.||+.|||+|++.+.+++|++|+|++|....
T Consensus 839 ~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 839 A--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred C--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 3 6799999999999999999999999999999999999998653
No 14
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=316.41 Aligned_cols=220 Identities=26% Similarity=0.389 Sum_probs=187.9
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
++.+|++++||||||||++|.|+++++.+... ++...++++.+.++++++..++++++++++++.+........+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999876543 34567789999999999999999999999999987766677889999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccchhhhhh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
+++.+...+.... .+++.+.+.+++.. .+.+|+.+|+|++.||++||+||+++| .|.|++...
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------- 346 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------- 346 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-------------
Confidence 9888777665544 67788887776543 578999999999999999999999765 455544211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+|
T Consensus 347 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G 386 (430)
T PRK11006 347 ----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGG 386 (430)
T ss_pred ----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCC
Confidence 1136799999999999999999999999988777777789
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 387 ~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 387 SGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 99999999999999999999999999999999999864
No 15
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=5.1e-31 Score=308.08 Aligned_cols=228 Identities=25% Similarity=0.374 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (959)
++++.++.++..+.+.+|++++||||||||+.|.+.++++.+.. ..+. +.+.+..+++..++++++.+++++.+.
T Consensus 198 fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~--~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~ 272 (433)
T PRK10604 198 FNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS--AAES---QALNRDIGQLEALIEELLTYARLDRPQ 272 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC--cHHH---HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34444555666667889999999999999999999999886332 2222 337778899999999999999999999
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeec
Q 002153 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (959)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (959)
.++...++++.+++++++..+......+++++.+..+ +..+.+|+..+++++.||++||+||++ |.|.|++...+
T Consensus 273 ~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~- 347 (433)
T PRK10604 273 NELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG- 347 (433)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC-
Confidence 8888889999999999999998887777777765322 335668999999999999999999984 77777664211
Q ss_pred ccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 002153 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (959)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (959)
..+.|+|+|+|+|||++.++++|+|||+
T Consensus 348 ----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~r 375 (433)
T PRK10604 348 ----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFVR 375 (433)
T ss_pred ----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCcc
Confidence 1367999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+.+.++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 376 ~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 376 LDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 98887777789999999999999999999999999999999999999864
No 16
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=6.1e-30 Score=305.59 Aligned_cols=366 Identities=18% Similarity=0.252 Sum_probs=262.0
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~-----l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (959)
...++++.++||+||||+.|.++++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3467899999999999999999999875321 223446778889999999999999999998743 3345668
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccchh
Q 002153 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 589 (959)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i 589 (959)
++..+++.+...+. ....+++.+.+.+++..+ .+.+|+.+++|++.||+.||+||++.| .|.|++..........
T Consensus 238 ~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~-- 313 (540)
T PRK13557 238 NLNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL-- 313 (540)
T ss_pred CHHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc--
Confidence 99999998877654 334577888777666554 367899999999999999999998664 4444432211000000
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 002153 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (959)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (959)
..| ....+...+.|+|.|+|+|||++.+.++|+||++.+ .
T Consensus 314 --------------------~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~----~ 353 (540)
T PRK13557 314 --------------------AMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTK----E 353 (540)
T ss_pred --------------------ccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccC----C
Confidence 000 001122357899999999999999999999999653 2
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchh
Q 002153 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749 (959)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~ 749 (959)
..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|.......... ...........+.+++++||++.
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~-------~~~~~~~~~~~~~~iliv~~~~~ 426 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQ-------EPKARAIDRGGTETILIVDDRPD 426 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCC-------CCCCcccccCCCceEEEEcCcHH
Confidence 34699999999999999999999999999999999999998643221111 01111223456789999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccc-cCccchHHHHHHHHhcCCCCCceEEEEecCCC
Q 002153 750 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828 (959)
Q Consensus 750 ~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 828 (959)
.+..+...|+..|+.+..+.+..+++..+.. ...+|++++|..+.. .+ ....+..++...+ ...++++.....
T Consensus 427 ~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~---~~~~~~~l~~~~~--~~~ii~~~~~~~ 500 (540)
T PRK13557 427 VAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMN---GVMLAREARRRQP--KIKVLLTTGYAE 500 (540)
T ss_pred HHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCC---HHHHHHHHHHhCC--CCcEEEEcCCCc
Confidence 9999999999999999999999999988743 236899999987653 22 2334555655321 233333333222
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 829 ~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.... ......|...++.||+....+...+..++.
T Consensus 501 ~~~~-~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 501 ASIE-RTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred hhhh-hhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 1111 112222566799999999999998887664
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.98 E-value=5.3e-30 Score=303.14 Aligned_cols=222 Identities=20% Similarity=0.281 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE
Q 002153 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (959)
Q Consensus 429 ~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~ 508 (959)
+.++..+...+|++++||||||||+.|.+.++.|.+.... ...+....+.+...++..+++++++.++.+++...+...
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344445567899999999999999999999988765422 223344567778889999999999999999988888888
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccch
Q 002153 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588 (959)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~ 588 (959)
.+++..++++++..+...+..+++.+.+++++.. .+.+|+..+.+|+.||++||+||+++ .|.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 8999999999999999999999999998876543 56799999999999999999999965 355544321
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc
Q 002153 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (959)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s 668 (959)
...+.|+|+|+|+|||++.++++|+||++.+.
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~--- 437 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADT--- 437 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC---
Confidence 12467999999999999999999999998643
Q ss_pred CcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 669 ~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
..+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 438 -~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 438 -LRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred -CCCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 235999999999999999999999999999999999999875
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=2.2e-30 Score=304.96 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=166.0
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD---VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~---~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (959)
...++++.++|||||||++|.|+++++.....+ ....+.+..+......+...++++++ ........++|+
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~dl 348 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVNL 348 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCcccccccccH
Confidence 345678888999999999999999998765333 22334444444444444344444332 233344568999
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc---EEEEEEEeecccccchh
Q 002153 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH---IFVTVYLVEEVVDSIEV 589 (959)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~---I~v~v~~~~~~~~~i~i 589 (959)
..++++++..+...+..+++.+.+..++..| .+.+|+.+|+||+.||++||+||++.+. ..|.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~--------- 418 (494)
T TIGR02938 349 NQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTA--------- 418 (494)
T ss_pred HHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEE---------
Confidence 9999999999998899999999988876666 5789999999999999999999996652 12222110
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 002153 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (959)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (959)
.+...+.|+|+|||+|||++.+.+||+||++.+++
T Consensus 419 ------------------------------------------~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~--- 453 (494)
T TIGR02938 419 ------------------------------------------LNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG--- 453 (494)
T ss_pred ------------------------------------------ecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---
Confidence 01124689999999999999999999999987643
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
..+|+||||+|||.||+.|||+|+++|.+|+||+|+|++|+
T Consensus 454 ~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 454 SRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 26799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=2.2e-29 Score=296.12 Aligned_cols=235 Identities=25% Similarity=0.421 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002153 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (959)
Q Consensus 422 ~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (959)
.++++..+.+...+.+.+|++.+|||+||||+.+.+.++.+.+.... ...+.+..+....+++..++++++++++.+.+
T Consensus 225 ~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~ 303 (466)
T PRK10549 225 DFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLHQLSLSDEG 303 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34445556666667788999999999999999999999998765332 23456788888999999999999999999999
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEe
Q 002153 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 580 (959)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~ 580 (959)
...+...++++.+++++++..+......+++++.+++++.. .+.+|+..+.|++.||++||+||++. |.|.|.+...
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~ 381 (466)
T PRK10549 304 ALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR 381 (466)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 99999999999999999999999999899999988876543 46799999999999999999999975 5666655321
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
...+.|+|+|+|+|||++.++++|+||
T Consensus 382 -----------------------------------------------------~~~~~i~V~D~G~Gi~~e~~~~lf~~~ 408 (466)
T PRK10549 382 -----------------------------------------------------DKTLRLTFADSAPGVSDEQLQKLFERF 408 (466)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhccCc
Confidence 124789999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|+.+.+..+..+|+||||+||+++++.|||++.++|.+++||+|+|.+|+..
T Consensus 409 ~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 409 YRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred ccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 9988776667789999999999999999999999999999999999999854
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=2.7e-29 Score=315.64 Aligned_cols=222 Identities=22% Similarity=0.355 Sum_probs=187.4
Q ss_pred HHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 002153 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE--LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (959)
Q Consensus 433 a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~--l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (959)
.++.+++|++.+||||||||++|.|+++++.... ......+.++.+.+...++..++++++++++++++...++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3456789999999999999999999999876432 12233467888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccchh
Q 002153 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 589 (959)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i 589 (959)
++.+++++++..+......+++.+. +++..+ .+.+|+.+|.||+.||++||+||++.| .|.|++...
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~--------- 807 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE--------- 807 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe---------
Confidence 9999999999999887777766654 455444 578999999999999999999999765 455554311
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 002153 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (959)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (959)
...+.|+|.|+|+|||++.+++||+||++.+.. +
T Consensus 808 --------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~ 841 (895)
T PRK10490 808 --------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--S 841 (895)
T ss_pred --------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--C
Confidence 124789999999999999999999999986542 3
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 842 ~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 842 AIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 4569999999999999999999999999999999999999854
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=1e-28 Score=290.52 Aligned_cols=213 Identities=26% Similarity=0.434 Sum_probs=182.0
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
+..+|.+++|||+||||++|.|+++++.+.. .+.+.+++++.+.+..+++..++++++++++.. ..+..++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999887643 334567788899999999999999999999843 34456789999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
++++++..+...+.++++.+.++.++..+ .+.+|+.++.|++.||++||+||+.. |.|.|++...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 46789999999999999999999754 5666655321
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
...+.|+|+|+|+|||++.++++|+||++. +.+|
T Consensus 378 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g 411 (457)
T PRK10364 378 ----------------------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEG 411 (457)
T ss_pred ----------------------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccC------CCCC
Confidence 113789999999999999999999999853 2468
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.2e-28 Score=280.28 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (959)
+.++.++.+...+.+.+|++++||||||||++|.+.++++.+... .....+....+++...+++++++++.+...
T Consensus 123 ~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-----~~~~~~~~~~~~l~~~i~~ll~~~r~~~~~ 197 (356)
T PRK10755 123 LNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-----IDVAPLIARLDQMMHTVEQLLQLARAGQSF 197 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 344444455555556789999999999999999999998765432 123445556778999999999999988766
Q ss_pred cceeeEeecH-HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEe
Q 002153 503 LELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 580 (959)
Q Consensus 503 l~l~~~~~dL-~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~ 580 (959)
......++++ .+++..+...+...+..+++.+.+...+ .+..+.+|+.++++|+.||++||+||++. |.|.|++...
T Consensus 198 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~ 276 (356)
T PRK10755 198 SSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE 276 (356)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc
Confidence 5556667788 8889988888888888888888774322 34568899999999999999999999965 4566655311
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
...+.++|+|+|+||+++.++++|+||
T Consensus 277 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 303 (356)
T PRK10755 277 -----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKAF 303 (356)
T ss_pred -----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCCe
Confidence 123689999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEEeC
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GttF~~~lp~~ 711 (959)
++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 304 ~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 304 VRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred EeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 97642 357999999999999999999999999998 999999999864
No 23
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-26 Score=261.88 Aligned_cols=212 Identities=23% Similarity=0.414 Sum_probs=181.8
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 002153 437 KSQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (959)
..++.+.+||||+.||++|.++++ .|.+....++..+.++.|..-.++|-.+..++-.|++--... ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 358999999999999999999876 566666777788999999999999999999999998855443 4578899
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC---CCcEEEEEEEeecccccchhh
Q 002153 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVE 590 (959)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~ 590 (959)
+.|++++.++....+..+..+....++. |..|.+|+.||+|||.|||.||+.++. ++.|.|.+..
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~----------- 527 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR----------- 527 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe-----------
Confidence 9999999999999999999998877654 557999999999999999999999974 4555544421
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 002153 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (959)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (959)
+...+.++|.|||+||+++...++|+||++.++ .
T Consensus 528 ------------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~ 561 (603)
T COG4191 528 ------------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----V 561 (603)
T ss_pred ------------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc----c
Confidence 123478999999999999999999999996542 3
Q ss_pred CCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 671 ~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
..|.||||+||+.|++.|||+|.+.+.++.|+.|+++++.
T Consensus 562 ~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 562 GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 5799999999999999999999999999999999999974
No 24
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=4.2e-28 Score=286.36 Aligned_cols=231 Identities=26% Similarity=0.428 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (959)
++++.++.++....+.+|++.+|||||||++.|.+.++.+..... .....+.+..+.....++..++++++++++.+.+
T Consensus 248 ~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~ 327 (482)
T PRK09835 248 FNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNN 327 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444455566666677889999999999999999999988765433 2344566777788889999999999999999999
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc-EEEEEEEe
Q 002153 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLV 580 (959)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v~~~ 580 (959)
.......++++.++++++...+...+.++++.+.+..+ +..+.+|+.++++|+.||++||+||++.|. |.|++...
T Consensus 328 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~ 404 (482)
T PRK09835 328 QLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV 404 (482)
T ss_pred CCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence 88888889999999999999999888889988876532 346789999999999999999999997654 66655321
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
+ ..+.|+|+|+|+|||++.++++|+||
T Consensus 405 ~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~f 431 (482)
T PRK09835 405 D-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDRF 431 (482)
T ss_pred C-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCCc
Confidence 1 13679999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
|+.+.+.++..+|+||||+||+++++.|||+|+++|.+ +||+|++++|.
T Consensus 432 ~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 432 YRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 99987766667899999999999999999999999975 69999999985
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=2.5e-28 Score=285.83 Aligned_cols=229 Identities=29% Similarity=0.448 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (959)
+..+.++.++......++.+.+||||||||+.+.+.++.+.....+ ....++++.+.....++..++++++++++++..
T Consensus 227 ~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 306 (457)
T TIGR01386 227 FNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNG 306 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555667899999999999999999999987654333 344577888888889999999999999999999
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEe
Q 002153 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 580 (959)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~ 580 (959)
.......++++.++++++++.+...+.++++++.+..+ ..+.+|+..|.+++.||++||+||++. |.|.|++...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~ 382 (457)
T TIGR01386 307 QLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR 382 (457)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec
Confidence 88888889999999999999999888899988766432 457899999999999999999999965 5666655321
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
...+.|+|+|+|+|||++.++++|+||
T Consensus 383 -----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~~ 409 (457)
T TIGR01386 383 -----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDRF 409 (457)
T ss_pred -----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcccc
Confidence 124679999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp 709 (959)
|+.+.+.++..+|+||||+||+++++.|||+|.+++ +++||+|++++|
T Consensus 410 ~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 410 YRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred ccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 999887666778999999999999999999999999 999999999987
No 26
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=3.7e-28 Score=298.72 Aligned_cols=229 Identities=19% Similarity=0.304 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 002153 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (959)
Q Consensus 425 e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~ 504 (959)
++..+.++......+|.+.+|||+||||+.|.+.++.+.....+....++++.+..+.+++..++++++++++++.+...
T Consensus 473 ~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~ 552 (703)
T TIGR03785 473 QMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQS 552 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33445555556677899999999999999999999998877777777889999999999999999999999999988878
Q ss_pred eeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecc
Q 002153 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEV 583 (959)
Q Consensus 505 l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~ 583 (959)
.+..++++.+++++++..+......+++.+.+.. . +..+.+|+..|.|++.||++||+||++.| .|.|++...
T Consensus 553 ~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~--- 626 (703)
T TIGR03785 553 AEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN--- 626 (703)
T ss_pred ccceeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc---
Confidence 8888999999999999999988888877776543 2 23688999999999999999999999654 455544311
Q ss_pred cccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 002153 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (959)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (959)
...+.|+|+|+|+|||++.+++||+||++.
T Consensus 627 --------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~ 656 (703)
T TIGR03785 627 --------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVSV 656 (703)
T ss_pred --------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCeec
Confidence 124679999999999999999999999987
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEE
Q 002153 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (959)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GttF~~~lp 709 (959)
+...+...+|+||||+|||++++.|||+|.++|.++ +|++|++++|
T Consensus 657 ~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 657 RDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 655555556899999999999999999999999976 8999999987
No 27
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=7.3e-29 Score=260.39 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=181.4
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
++-..+.++++|||||||.||.|.+++|.....++..++|.+.|.+.+++|.+|++.+.-++- .-..+..++|++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999998877777899999999999999999988855443 3334556889999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC---C--CcEEEEEEEeecccccchh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 589 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~i~i 589 (959)
+++.|..+....+ ..++.+.-+.++.+|. +.+|+++|.|++.||+.||+++.. . |.|.++-+..-. ..+
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q----~~i 279 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQ----LTI 279 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceE----EEc
Confidence 9999998876554 4578888899999986 679999999999999999999874 2 777665432110 000
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 002153 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (959)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (959)
........+.++|.|||+|||++.++++|.||.. .
T Consensus 280 ---------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs------~ 314 (363)
T COG3852 280 ---------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS------G 314 (363)
T ss_pred ---------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhccccccc------c
Confidence 0011223467899999999999999999999984 3
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+.+||||||+|+++++..|||.|.|+|.|| .|+|++.+|...
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 558999999999999999999999999997 699999999864
No 28
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=280.52 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (959)
+....++.++....+.+|++++|||+||||++|.+..+++.....+. +.+..+....+++..++++++++++.+...
T Consensus 229 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~ 305 (461)
T PRK09470 229 FNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQKN 305 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444555666666778999999999999999999998876544332 246678888999999999999999987653
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeec
Q 002153 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (959)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (959)
.+....+++..++++++..+...+..+++.+.+...+. +..+.+|+..+.+++.||++||+||++ +.|.|+++..+
T Consensus 306 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~- 381 (461)
T PRK09470 306 -HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK- 381 (461)
T ss_pred -ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC-
Confidence 56667899999999999988888888888888774332 446889999999999999999999986 56666654211
Q ss_pred ccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 002153 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (959)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (959)
..+.++|+|+|+||+++.++++|+|||+
T Consensus 382 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~ 409 (461)
T PRK09470 382 ----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFYR 409 (461)
T ss_pred ----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCcc
Confidence 1367999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+...++..+|+||||+||+++++.|||++.+.|.+++||+|++++|+..
T Consensus 410 ~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 410 VDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred CCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 88776777789999999999999999999999999999999999999853
No 29
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=2e-28 Score=276.95 Aligned_cols=235 Identities=25% Similarity=0.406 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002153 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (959)
Q Consensus 421 ~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~---~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (959)
.++.++...+|+.+....+|...+||++|+||+.|.+++++|... .++.+.++++..+.+....+.++|++++.+++
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445566667788888889999999999999999999999999764 56788899999999999999999999999999
Q ss_pred hhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEE
Q 002153 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577 (959)
Q Consensus 498 iesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v 577 (959)
+......+. +.|+.+++++++........+.++++.+. + .| .+.+|+.++.|++.||+.|||||..++.-.|.|
T Consensus 588 l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I 661 (750)
T COG4251 588 LGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEI 661 (750)
T ss_pred hccccCCCC--CcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEE
Confidence 987766665 67999999999999999999999988764 3 55 478999999999999999999998665333333
Q ss_pred EEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhcc
Q 002153 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657 (959)
Q Consensus 578 ~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IF 657 (959)
.... ....+.++|.|+|+||.++..++||
T Consensus 662 ~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 662 SAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred eeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 2110 1123679999999999999999999
Q ss_pred CCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCC
Q 002153 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (959)
Q Consensus 658 epF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~ 714 (959)
..|-+..+ ...+.|||+||+|||+|++.|+|.|+++|++|+|+||.|++|....+
T Consensus 691 ~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 691 VIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred HHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 99987643 45678999999999999999999999999999999999999987543
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=276.95 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002153 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (959)
Q Consensus 421 ~~l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (959)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....+++..++++++++.+.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344555566677777889999999999999999999988877532 233456678888999999999999998765
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEe
Q 002153 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (959)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (959)
. ....++++.+++++++.... ..+..+.+.+++. +..+.+|+..|++++.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 4 23567899999999887654 3444555555443 33688999999999999999999998 56676665321
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
...+.|+|.|+|+|||++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 123679999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
++.+.+ +..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~--~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSA--RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCC--CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 997654 3347999999999999999999999999999999999999974
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=3.4e-27 Score=276.61 Aligned_cols=225 Identities=20% Similarity=0.315 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002153 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (959)
Q Consensus 423 l~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (959)
++.+..+.++......+|++.+|||||||++.+.+.++.+.....++ ...++++.+....+++..++++++++++++.+
T Consensus 223 ~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~ 302 (449)
T PRK10337 223 LNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSL 302 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444555555668999999999999999999988776544333 34568889999999999999999999999987
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEe
Q 002153 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLV 580 (959)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~ 580 (959)
....+..++++.+++++++..+...+..+++++.+.+++. +..+.+|+..+.+++.||++||+||++.| .|.+++..
T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~- 380 (449)
T PRK10337 303 DNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA- 380 (449)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-
Confidence 7666777899999999999999888899999999887643 34568999999999999999999999764 44443310
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
..++|+|+|+|||++.++++|+||
T Consensus 381 --------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~f 404 (449)
T PRK10337 381 --------------------------------------------------------RNFTVRDNGPGVTPEALARIGERF 404 (449)
T ss_pred --------------------------------------------------------eEEEEEECCCCCCHHHHHHhcccc
Confidence 148999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~l 708 (959)
|+.+. +..+|+||||+||++++++|||+|+++|.+++|++|++++
T Consensus 405 ~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 405 YRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred cCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 98543 2446999999999999999999999999999999998863
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=1.3e-27 Score=266.47 Aligned_cols=217 Identities=32% Similarity=0.429 Sum_probs=188.4
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
+.+|++.++|||||||++|.++++++... ..++...++++.+..+++++..++++++++++++.+.......++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 45699999999999999999999988654 3445567889999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
+++.+...+......+++.+.+.++ . +..+.+|+..|.+|+.||+.||+||++. +.|.|++...
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------- 258 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------- 258 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc-------------
Confidence 9999999999999999999988873 2 3467899999999999999999999865 4555544211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
...+.|.|.|+|+|||++.++++|+||++.+...+...+|
T Consensus 259 ----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g 298 (333)
T TIGR02966 259 ----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGG 298 (333)
T ss_pred ----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCC
Confidence 1136799999999999999999999999877665666789
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~l 708 (959)
+||||++|+.+++.|||+|++.|.+++||+|++++
T Consensus 299 ~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 299 TGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 99999999999999999999999999999999874
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=3.1e-26 Score=269.20 Aligned_cols=218 Identities=25% Similarity=0.395 Sum_probs=190.1
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHH
Q 002153 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll 516 (959)
..+|++.++||+|||++.+.+.++++.+....+...++++.+....+++..++++++++++++.........++++.+++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAALL 335 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHHH
Confidence 45789999999999999999999998875555667789999999999999999999999999988877778889999999
Q ss_pred HHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhhcc
Q 002153 517 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSS 595 (959)
Q Consensus 517 ~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~ 595 (959)
+++...+...+..+++.+.+.++ +..+.+|...+.+++.||+.||+||+.+ |.|.|++...
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~--------------- 397 (475)
T PRK11100 336 EELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD--------------- 397 (475)
T ss_pred HHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc---------------
Confidence 99999999999999999888765 3467889999999999999999999854 6676665421
Q ss_pred ccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 002153 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (959)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (959)
...+.++|+|+|+|||++.++++|+||++.+.. ....+|+|
T Consensus 398 --------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~G 438 (475)
T PRK11100 398 --------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTG 438 (475)
T ss_pred --------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcc
Confidence 124789999999999999999999999976432 23457899
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
|||+||+++++.|||+|.++|.++.||+|.+++|..
T Consensus 439 lGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 439 LGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred hhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 999999999999999999999999999999999863
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.2e-26 Score=262.68 Aligned_cols=217 Identities=24% Similarity=0.440 Sum_probs=172.0
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++.+... ..+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666667789999999999999999999997755332 245789999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhcc--CCCcEEEEEEEeecccccchhhhhh
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
++.+...+.... .+++.+.+..++..+ .+.+|+.+|.||+.||++||+||+ +.|.|.|++...... .+
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~----~~---- 272 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQL----TL---- 272 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccc----cc----
Confidence 998888776544 467888777766555 477899999999999999999997 345555543211000 00
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
........+.+.|.|+|+|||++.++++|+||++. +.+|
T Consensus 273 -----------------------------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 273 -----------------------------------HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred -----------------------------------CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 00011123579999999999999999999999853 2469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
+||||+|||++++.|||+|+++|.+|+ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999996
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-25 Score=242.86 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=182.2
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cceeeEeecHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 514 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~-l~l~~~~~dL~~ 514 (959)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999988865554222 267788888899999999999999999998863 333456678999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhc
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (959)
+++++...+......+.+.+....+ .+..+.+|+.+++|++.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999888888888886554 2346788999999999999999999998677776654210
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 002153 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (959)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (959)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0478999999999999999999999998655322 99
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
||||+||+++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999864
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=6.6e-25 Score=264.68 Aligned_cols=214 Identities=26% Similarity=0.483 Sum_probs=183.6
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
+..+|++.++||+||||+.|.++++++.....+....++++.+....+++..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765666778999999999999999999999999876543 357899999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhhc
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELS 594 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~ 594 (959)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+.. |.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998878889999888776655 46789999999999999999999754 56666543210
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 002153 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (959)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (959)
...+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 531 ---------------------------------------~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 531 ---------------------------------------DGQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ---------------------------------------CCEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 0127899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
||||++|++++++|||+|+++|.+|+||+|++++|...
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=1.4e-25 Score=233.35 Aligned_cols=186 Identities=30% Similarity=0.450 Sum_probs=138.4
Q ss_pred CCCCCHHHHHHHHhh--hhhcCCCcceeeeecccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEE--
Q 002153 157 PSAIDQMTFTRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF-- 232 (959)
Q Consensus 157 ~~~id~~~f~~~~~~--~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~-- 232 (959)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++........ ...|.+.+++|+||.|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f--------~i~~~~~~~~~~pv~yi~ 73 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDF--------RIRPDGPRDEYFPVTYIE 73 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S----------BTTS--SEE-BEEEE-
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccce--------EeeeCCCCCCceEEEEee
Confidence 468999999999999 9999999999999999999999999998743322211 1113458899999955
Q ss_pred ecCCcceeEeeccccCcccHHHHHHHHHcCCceeeeceeecccC--CceeEEEEEeeccCCCCCCChhHHHhhhcceeee
Q 002153 233 AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310 (959)
Q Consensus 233 ~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~--~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~ 310 (959)
|...+..++|+|++|+|.+|++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|...++||+.+
T Consensus 74 P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~ 153 (193)
T PF03924_consen 74 PLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSA 153 (193)
T ss_dssp GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEE
T ss_pred cchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEE
Confidence 66778999999999999999999999999999999999999865 6999999999977666777899999999999999
Q ss_pred eeeHHHHHHHHHHHhhccceEEEeecccCCCCCceecccc
Q 002153 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350 (959)
Q Consensus 311 ~~~v~~l~~~ll~~~~~~~~i~v~v~d~~~~~~~~~~y~~ 350 (959)
+|++++|++.++........+.+.+||.+....+..+|++
T Consensus 154 v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 154 VFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 9999999999987765446888999998877777777763
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=9.3e-24 Score=260.30 Aligned_cols=203 Identities=21% Similarity=0.320 Sum_probs=161.3
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
+.+++.+.++||||||++.+..+++...+...++ .++++++.+.++.+++.++++++.+.. ...+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHH
Confidence 3467889999999999999988888766544443 356778888888889888887764332 245566789999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
+++++.+.+... ...+++. ++++ ..+.+|+..++||+.||++||+||++. |.|.|++...
T Consensus 548 ll~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------- 608 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------- 608 (679)
T ss_pred HHHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc-------------
Confidence 999998876543 2333333 3333 467899999999999999999999964 6777665421
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhh-HhhccCCccccCCCCcCcCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~IFepF~q~~~s~s~~~~ 672 (959)
...+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 609 ----------------------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 609 ----------------------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred ----------------------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 1246899999999999999 999999998642 27
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002153 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (959)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp 709 (959)
|+||||++||++++.|||+|.++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999987
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.92 E-value=5.2e-24 Score=267.02 Aligned_cols=209 Identities=17% Similarity=0.180 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 002153 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (959)
Q Consensus 425 e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~ 504 (959)
+++++++++.++|++|+++|||||||||++|.|+++++.+...++....++..+......+...++.++..
T Consensus 593 ~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 663 (807)
T PRK13560 593 HAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS--------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 34455566677899999999999999999999999998877667777777766666555555555444321
Q ss_pred eeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEe
Q 002153 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLV 580 (959)
Q Consensus 505 l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~ 580 (959)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|++...
T Consensus 664 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 743 (807)
T PRK13560 664 EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQ 743 (807)
T ss_pred ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEc
Confidence 133468999999999988887766666556665554443334456678899999999999999843 4555544210
Q ss_pred ecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCc
Q 002153 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (959)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (959)
+...+.|+|+|||+|||++..
T Consensus 744 ----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~------- 764 (807)
T PRK13560 744 ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD------- 764 (807)
T ss_pred ----------------------------------------------------CCCEEEEEEEeCCCcCCcccc-------
Confidence 112478999999999998731
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
...|+||||+|||+||+.|||+|+++|. +||+|+|++|+..
T Consensus 765 ---------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 765 ---------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred ---------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 1246789999999999999999999994 7999999999853
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.89 E-value=5.5e-22 Score=237.67 Aligned_cols=194 Identities=22% Similarity=0.323 Sum_probs=134.8
Q ss_pred HHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHH
Q 002153 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517 (959)
Q Consensus 438 s~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~ 517 (959)
.++++.++||+||||++|.|++++... ....+++..+. ......++++++..+ . .++.
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~--~-------------~~~~ 397 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTA---NNYQEEIGSLLGKIK--S-------------PVIA 397 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHH---HHHHHHHHHHHHhcc--C-------------HHHH
Confidence 456778999999999999999886432 12233433221 222222333322111 0 1112
Q ss_pred HHHHHHhhhhhccCcEEEEEecCCCCceE-EecHHHHHHHHHHHHHHHHhccC---CCcEEEEEEEeecccccchhhhhh
Q 002153 518 DVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 518 ~vl~~~~~~a~~k~I~l~~~i~~~~p~~v-~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
..+......+.++++.+.+..++..|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------- 464 (542)
T PRK11086 398 GFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------- 464 (542)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-------------
Confidence 22222234567788888887665544321 12345799999999999999963 35565554311
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
...+.|+|+|+|+|||++.++++|+||++. +.+|
T Consensus 465 ----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~g 498 (542)
T PRK11086 465 ----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGSN 498 (542)
T ss_pred ----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCCC
Confidence 124679999999999999999999999853 3469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 499 ~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 499 RGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 999999999999999999999999999999999999864
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=5.6e-21 Score=226.55 Aligned_cols=195 Identities=11% Similarity=0.187 Sum_probs=151.3
Q ss_pred HHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 002153 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (959)
Q Consensus 434 ~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (959)
++.+.++.+.+.||++|||++|.+.++++.+...+ ++.++..+.+.+.+.++.+.++++++..+-. ...++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCH
Confidence 34566788899999999999999999988664433 3445778888999999999999998655421 2335789
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhh
Q 002153 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988765554444444443332 22344678889999999999999999888877765421
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (959)
...+.++|+|+|+|||++. .
T Consensus 439 -----------------------------------------~~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 439 -----------------------------------------DERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCcCC-------------------C
Confidence 1247899999999999651 3
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
|+|+||+++|++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-21 Score=220.71 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=166.1
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcC---CCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEe
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~---~l~~---~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~ 509 (959)
|-++-..-++|||||||+-|.-.++-|... ..++ .-.++.++|.+....+.+++++.-.|+|+-.-+ .++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~----~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPK----LEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCc
Confidence 445555669999999999999999877532 2232 235688999999999999999999999975544 446
Q ss_pred ecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-----c-EEEEEEEeecc
Q 002153 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-----H-IFVTVYLVEEV 583 (959)
Q Consensus 510 ~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-----~-I~v~v~~~~~~ 583 (959)
.||++++++++.++.. ....+.+..+.... |.....|+..++|++.||+.||.++-+.- . -.++++.
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~---- 633 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL---- 633 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE----
Confidence 7999999999987764 34567777777765 77778899999999999999999986321 0 0111111
Q ss_pred cccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 002153 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (959)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (959)
......+++.|.|||.|.|.+.+.++||||++.
T Consensus 634 -----------------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 634 -----------------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred -----------------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 112235889999999999999999999999864
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC-CCcEEEEEEEEe
Q 002153 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 710 (959)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~-g~GttF~~~lp~ 710 (959)
..+||||||+|||+|+|.|||.|.+...| -.|....+.+|.
T Consensus 667 ------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 667 ------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 34799999999999999999999999884 359999999886
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=5.5e-21 Score=229.84 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=141.4
Q ss_pred hHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHH
Q 002153 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (959)
Q Consensus 440 Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (959)
.+..++||+++||++|.|++++-. ..+..+.+...+..+..+++++....+ ...+...+
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGLL 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHHH
Confidence 456689999999999999877521 234566667777777777777765322 11122222
Q ss_pred HHHHhhhhhccCcEEEEEecCCCC-ceEEecHHHHHHHHHHHHHHHHhcc---CCCcEEEEEEEeecccccchhhhhhcc
Q 002153 520 LSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELSS 595 (959)
Q Consensus 520 l~~~~~~a~~k~I~l~~~i~~~~p-~~v~gD~~rL~QIL~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~i~i~~~~~~ 595 (959)
. .....+.++++.+.+....... .....|+..|.||+.||++||+||. +.|...|.+....
T Consensus 400 ~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~-------------- 464 (545)
T PRK15053 400 F-GKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD-------------- 464 (545)
T ss_pred H-HHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--------------
Confidence 2 1234466788887765433211 1234699999999999999999995 3333233332211
Q ss_pred ccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 002153 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (959)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (959)
+...+.++|+|+|+|||++.++++|+|||+.+ ++..+|+|
T Consensus 465 -------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~G 504 (545)
T PRK15053 465 -------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEHG 504 (545)
T ss_pred -------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCce
Confidence 11246899999999999999999999999743 33456899
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 505 lGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 505 IGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 9999999999999999999999999999999999753
No 44
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-20 Score=198.80 Aligned_cols=228 Identities=17% Similarity=0.145 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 002153 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQM 163 (959)
Q Consensus 84 w~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~ 163 (959)
|++++-++.+++++++|+.++-.+....++.-|-.|...+|.++.+|+++++...+.+.+-.+||.++ ..+|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s~-----~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRSS-----TSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCcHH
Confidence 33444444466666777777666677777777778999999999999999999999999999999984 5689999
Q ss_pred HHHHHHhhhhhcCCCcceeeeecccCchhHHHHHHHhcccee-ecccCCCCCCCCCCC-CCCCCcccce--EEecCC-cc
Q 002153 164 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIK-RMDTFEHNPVHKDEP-SPIEEEYAPV--IFAQDT-VS 238 (959)
Q Consensus 164 ~f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~-~~~~~~~~~~~~~~~-~~~~~~Y~pv--i~~~~~-~~ 238 (959)
+|+.|+. ++.....+.|+.|...|...+++.||..+-..+. .......+-.++..| ...+++|||| |+|... |.
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~ 163 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNR 163 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccch
Confidence 9999998 7777888999999999999999999975421111 111111111233456 6778899999 446555 88
Q ss_pred eeEeeccccCcccHHHHHHHHHcCCceeeeceeecccC-----CceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeee
Q 002153 239 HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN-----RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313 (959)
Q Consensus 239 ~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~-----~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~ 313 (959)
.++||||.|+|.||+|+..|++++.+.+|+|++|+|.. .+|++++.|||+.+.++...+. .....||++..+.
T Consensus 164 ~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~ 241 (348)
T COG3614 164 KALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATR 241 (348)
T ss_pred hhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999842 3689999999998766554432 2345688888877
Q ss_pred HHHHHH
Q 002153 314 IESLVE 319 (959)
Q Consensus 314 v~~l~~ 319 (959)
..+++.
T Consensus 242 ~~~~~q 247 (348)
T COG3614 242 FEKLVQ 247 (348)
T ss_pred Hhhhhh
Confidence 776654
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.84 E-value=2.2e-19 Score=196.56 Aligned_cols=212 Identities=20% Similarity=0.345 Sum_probs=172.6
Q ss_pred HHhHhhcchhhhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 438 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 438 s~Fla~iSHEIRTPL~~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
.+-+.++||||..|||++..++= ...+.........+++.|..-.+++-.+|+.+..|+|-.+++-.+ .|+++.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 46788999999999999988763 333444455668899999999999999999999999988887555 4689999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhc
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (959)
++..+.+++..+.+.+.+.+.... + ..+|.||..+++||+.||+-||+.++..---.|.+...
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--D-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--c-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999888888876533 2 34789999999999999999999987542222222111
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 002153 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (959)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (959)
+.+...+++.|.|+|.|-|-+..+++|.||.. .+.-|.
T Consensus 593 ------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtt------sK~vgL 630 (673)
T COG4192 593 ------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTT------SKEVGL 630 (673)
T ss_pred ------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCccc------cccccc
Confidence 11223478999999999999999999999964 344699
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
|||||||..|++.|.|.+.+.|...+|..+.+.+..
T Consensus 631 GlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 631 GLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 999999999999999999999999999998877644
No 46
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=3.7e-19 Score=167.95 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.1
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002153 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (959)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (959)
||+.++++|+.||+.||++|+++ |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999976 78877765321
Q ss_pred CCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEE
Q 002153 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (959)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~ 706 (959)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+|+||++|+.++++|+|++++.|.+++||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2478999999999999999999999998776 3345578999999999999999999999999999999999
Q ss_pred EEEe
Q 002153 707 TAVF 710 (959)
Q Consensus 707 ~lp~ 710 (959)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9997
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=2.6e-18 Score=195.76 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=139.5
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
.+.+|++.++||+||||+.|.|+++++... ....++++.+.....+|..+++++++.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 345688999999999999999999988622 23456788888899999999998887543 346899999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEec-HHHHHHHHHHHHHHHHhc---c-CCCcEEEEEEEeecccccchhh
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEVE 590 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD-~~rL~QIL~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~i~i~ 590 (959)
+++++..+... +..+.+..+ .+ .+..+ ...|.||+.||+.||+|| + +.|.|.|++...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998877543 344444322 11 12222 346999999999999999 4 357776665210
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 002153 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (959)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (959)
.+...+.+.|.|+|.|++++
T Consensus 300 -----------------------------------------~~~~~~~i~v~d~G~~~~~~------------------- 319 (361)
T PRK13559 300 -----------------------------------------PEGAGFRIDWQEQGGPTPPK------------------- 319 (361)
T ss_pred -----------------------------------------CCCCeEEEEEECCCCCCCCC-------------------
Confidence 01124789999999997653
Q ss_pred CCCccchHHHHHHHHHH-cCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 671 HGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 671 ~~GtGLGLsI~k~LVe~-mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
..|+|+||.||+++++. |||+|++++. +.||+|++++|..
T Consensus 320 ~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.74 E-value=1.9e-16 Score=191.29 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=137.4
Q ss_pred hHhhcchhhhHHHHHHHHHHHH----HhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 002153 440 FLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (959)
Q Consensus 440 Fla~iSHEIRTPL~~I~g~lel----L~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (959)
....++||+++|++.++.++.. +... ...+...+.+..+.....++...+.+++...+. ...++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL-------TIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCCHH
Confidence 3455899999999888776543 3322 112334556666777777777777777764432 33467899
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhh
Q 002153 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593 (959)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~ 593 (959)
+.+++++..+... .++.+.+...........+++.++.|++.|++.||+||++.|.|.+.+...
T Consensus 436 ~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------- 499 (565)
T PRK10935 436 SALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------- 499 (565)
T ss_pred HHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-------------
Confidence 9999999888754 233333332211111223345679999999999999999888877765321
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 002153 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (959)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (959)
+...+.++|.|+|+|||++. ..|
T Consensus 500 ---------------------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~~ 522 (565)
T PRK10935 500 ---------------------------------------PDGEHTVSIRDDGIGIGELK------------------EPE 522 (565)
T ss_pred ---------------------------------------CCCEEEEEEEECCcCcCCCC------------------CCC
Confidence 01247799999999999631 247
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+|+||+||+++++.|||+|++.|.+++||+|++++|..
T Consensus 523 ~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 523 GHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 89999999999999999999999999999999999975
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-16 Score=181.69 Aligned_cols=192 Identities=26% Similarity=0.393 Sum_probs=138.4
Q ss_pred HhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHH
Q 002153 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520 (959)
Q Consensus 441 la~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl 520 (959)
+...+||..|-|+.|.|++++=.- .+..+|+..+.+.-+ ..++.+.. ++. ...+...+
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~qq---~~~~~l~~--~i~-------------~~~lAg~L 394 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQQ---ELIDSLSE--KIK-------------DPVLAGFL 394 (537)
T ss_pred HHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhhh---hhHHHHHH--hcc-------------cHHHHHHH
Confidence 456799999999999999987321 233455544443322 22222211 111 12334444
Q ss_pred HHHhhhhhccCcEEEEEecCCCCce-EEecHHHHHHHHHHHHHHHHhccC----CCcEEEEEEEeecccccchhhhhhcc
Q 002153 521 SLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSS 595 (959)
Q Consensus 521 ~~~~~~a~~k~I~l~~~i~~~~p~~-v~gD~~rL~QIL~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~i~i~~~~~~ 595 (959)
---..+|+++|+.+.++....+|.. -.-++.-+--|+.||++||+.++. ++.|.+.+.
T Consensus 395 lgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~----------------- 457 (537)
T COG3290 395 LGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS----------------- 457 (537)
T ss_pred HhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE-----------------
Confidence 4445678999999998876655431 224888999999999999999874 234444432
Q ss_pred ccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 002153 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (959)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (959)
.+...+.++|.|||+|||++.++++|+.-|..+ ..++.|
T Consensus 458 ------------------------------------~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk-----~~~~rG 496 (537)
T COG3290 458 ------------------------------------DRGDELVIEVADTGPGIPPEVRDKIFEKGVSTK-----NTGGRG 496 (537)
T ss_pred ------------------------------------ecCCEEEEEEeCCCCCCChHHHHHHHhcCcccc-----CCCCCc
Confidence 123358899999999999999999999876422 247899
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+||++||++|+.+||.|+++|+++.||+|++.+|...
T Consensus 497 iGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 497 IGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred hhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 9999999999999999999999999999999999864
No 50
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.69 E-value=3.4e-15 Score=180.92 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=132.7
Q ss_pred hhHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhh
Q 002153 448 IRTPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525 (959)
Q Consensus 448 IRTPL~~I~g~lelL~--~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~ 525 (959)
|..+|+.+...+..+. ....++..++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 3334455544444333 223455667889999999999999999999876642 2346888899998888765
Q ss_pred hhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCc
Q 002153 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605 (959)
Q Consensus 526 ~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~ 605 (959)
.. ++.+.+.+....+.....++..+.||+.|+++||+||++.+.|.|++...
T Consensus 446 ~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------- 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------- 497 (569)
T ss_pred Hh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-------------------------
Confidence 43 33444433221111111244569999999999999999888777665321
Q ss_pred cccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHH
Q 002153 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685 (959)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LV 685 (959)
...+.++|.|+|+|||++. ..|+|+||+||++++
T Consensus 498 ----------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~ 531 (569)
T PRK10600 498 ----------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRA 531 (569)
T ss_pred ----------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHH
Confidence 1247899999999999852 136799999999999
Q ss_pred HHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 686 GRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 686 e~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+.|||+|.+.|.+|+||+|++++|..
T Consensus 532 ~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 532 QSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHcCCEEEEEECCCCCEEEEEEEecC
Confidence 99999999999999999999999884
No 51
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.61 E-value=3.5e-15 Score=184.68 Aligned_cols=400 Identities=22% Similarity=0.255 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q 002153 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML-MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505 (959)
Q Consensus 427 ~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL-~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l 505 (959)
++++..+..++..++..++|..|+|++++.+....+ ....+...+.-.+++..+....+..+++.-.+.++...|....
T Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~ 455 (786)
T KOG0519|consen 376 KEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLG 455 (786)
T ss_pred hhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCccc
Confidence 344445555666777778899999999999988744 4444444455556777778888899999999999887777777
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHh--ccCCCcE-EEEEEEeec
Q 002153 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLVEE 582 (959)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK--fT~~G~I-~v~v~~~~~ 582 (959)
+...+.+..++...+.........+...+.+.+..+.+..+.+|..++.|++.+..+++.+ ++..|+= .+.+....
T Consensus 456 ~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~- 534 (786)
T KOG0519|consen 456 ESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAEL- 534 (786)
T ss_pred chhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecc-
Confidence 8888999999999999988888888888888888888888899999999999999999999 8877742 22322210
Q ss_pred ccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 002153 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (959)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (959)
..+.+.... +.. ..-|. .........+.+.++|++.|+....++..+.-|.+
T Consensus 535 --~~~~vd~~~--------~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 586 (786)
T KOG0519|consen 535 --LGISVDVSL--------SLS----LAFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKS 586 (786)
T ss_pred --cCccccccc--------cch----hhhhh--------------cccccccchheEEeeeccccccCCCcchhhhhhhc
Confidence 001111000 000 00000 00111113578999999999999888888877776
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEE-eCCC----cEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccC
Q 002153 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737 (959)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S-~~g~----GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (959)
....+++...+.+++++.|++..+.++|.+++.- ..+. -+.+....-.......... ...+...........++
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~ 665 (786)
T KOG0519|consen 587 LRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKL-SGNPEKLAEPRDSKLLT 665 (786)
T ss_pred cccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhcccccccccccc-CCCcccccCcccccccc
Confidence 6555555456789999999999999999998752 1111 0011111000000000000 00000111111445678
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
|.++|+||||++++.|...+|+++|+.+..+.++.+|+..+. ....||++++|.+|+..|+...+ +++|+.-....
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~---~~irk~~~~~~ 741 (786)
T KOG0519|consen 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEAT---REIRKKERWHL 741 (786)
T ss_pred CCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHH---HHHHHhhcCCC
Confidence 999999999999999999999999999999999999999987 56889999999999998875544 44554332222
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
|.+.+.|+... ...+.+...|++.+++||+....+..++++.+
T Consensus 742 pIvAlTa~~~~--~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADP--STEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcH--HHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 55555555333 23344455599999999999999999988765
No 52
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.59 E-value=8.9e-14 Score=167.77 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHH---HHHHHHHHHhccC-------------CCcEEE
Q 002153 512 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFTE-------------KGHIFV 575 (959)
Q Consensus 512 L~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT~-------------~G~I~v 575 (959)
+..+.+..-.+....+...+.++.+.+... .+..|+..+.++ |.||+.||++|+- .|.|.+
T Consensus 345 ~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l 421 (670)
T PRK10547 345 MEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLIL 421 (670)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEE
Confidence 455555555555555554444555544432 145799999999 6799999999962 355555
Q ss_pred EEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhH--
Q 002153 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ-- 653 (959)
Q Consensus 576 ~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~-- 653 (959)
++.. +...+.|+|+|+|.||+++.+
T Consensus 422 ~a~~-----------------------------------------------------~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 422 SAEH-----------------------------------------------------QGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred EEEE-----------------------------------------------------cCCEEEEEEEeCCCCCCHHHHHH
Confidence 5431 112478999999999998654
Q ss_pred -------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 654 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 654 -------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
..||+|||..... .+..+|+|+||+|||++++.|||+|.+.|.+|+||+|++++|+..
T Consensus 449 ~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 449 KAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 3699997754332 234579999999999999999999999999999999999999864
No 53
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.51 E-value=2.1e-13 Score=159.17 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=91.1
Q ss_pred EecHHHHHHHHHHHHHHHHhccCCCc----EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCC
Q 002153 547 IGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG 622 (959)
Q Consensus 547 ~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 622 (959)
.+++..|.|++.||++||++|++.++ |.|.+....
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~----------------------------------------- 69 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD----------------------------------------- 69 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc-----------------------------------------
Confidence 34668899999999999999997643 444432110
Q ss_pred CCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHcCCE-EEEEEeCC
Q 002153 623 STSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 699 (959)
Q Consensus 623 ~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g 699 (959)
.+...+.|+|+|||+|||++.++++|++|++.+... ....||+||||++|+.+++.|+|. |.+.|.++
T Consensus 70 ---------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~ 140 (535)
T PRK04184 70 ---------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTG 140 (535)
T ss_pred ---------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecC
Confidence 011246799999999999999999999987654322 234578999999999999999996 99999999
Q ss_pred CcE-EEEEEEEeCC
Q 002153 700 IGS-TFTFTAVFGN 712 (959)
Q Consensus 700 ~Gt-tF~~~lp~~~ 712 (959)
.|+ .|+|++++..
T Consensus 141 ~g~~~~~~~l~id~ 154 (535)
T PRK04184 141 GSKKAYYFELKIDT 154 (535)
T ss_pred CCceEEEEEEEecc
Confidence 998 8999998764
No 54
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.41 E-value=4e-12 Score=117.35 Aligned_cols=109 Identities=48% Similarity=0.705 Sum_probs=91.4
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002153 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (959)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (959)
+|+..|.+++.|++.||+++... +.|.|.+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 47889999999999999999976 6666655321
Q ss_pred CCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEE
Q 002153 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (959)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~ 706 (959)
...+.+.|.|+|.|++++...++|++++..+. .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 35 -------~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 35 -------GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred -------CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 12367999999999999999999999986543 2234567999999999999999999999999899999999
Q ss_pred EEEe
Q 002153 707 TAVF 710 (959)
Q Consensus 707 ~lp~ 710 (959)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 55
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.27 E-value=1.3e-10 Score=136.15 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=143.8
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
+++++||++..+..+...|...|+.+..+.++.++++.+.. ..+|++++|..+...+ ....+..++.........
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMD---GFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCCC
Confidence 79999999999999999999999999999999999988754 4589999998765432 334556666543222323
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCC-------Cccc----CCCCcchhhhccCCCE
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-------NIRN----WELPSMSLRHLLLGRK 888 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~ 888 (959)
+++++............ ..|...++.||+....+...+.......... ...+ ...+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 33443322222222222 2367789999999998887776654311000 0000 0000000111234568
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
||+|||++..+..+...|.. ++.+..+.++.+|+..+. .+.||+|++|+.||.|||+++++-.
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i 220 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQL 220 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHH
Confidence 99999999999999999975 477889999999999875 5789999999999999999998755
No 56
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.24 E-value=3.3e-11 Score=103.42 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.6
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhc-CCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 501 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~-~~l~~~q-~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (959)
+|++|++++||||||||++|.++++++.. ...++++ +++++.+..+++++..+++++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 7788887 999999999999999999999999999987
No 57
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.23 E-value=5e-11 Score=138.10 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=85.5
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCCC----cEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCC
Q 002153 546 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (959)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (959)
+.+|...|.+++.||++||++|+..+ .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 34688999999999999999998653 344433210
Q ss_pred CCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 002153 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (959)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (959)
+...+.|+|+|+|+|||++.++++|++|++.+... ....|+.|+||++|+.+++.|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999998 9999988
Q ss_pred CCcEEEEEEEE
Q 002153 699 NIGSTFTFTAV 709 (959)
Q Consensus 699 g~GttF~~~lp 709 (959)
+ |+.|..++.
T Consensus 130 ~-g~~~~~~~~ 139 (488)
T TIGR01052 130 G-GEIYVYKMK 139 (488)
T ss_pred C-CceEEEEEE
Confidence 7 666633333
No 58
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=8.4e-11 Score=139.91 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=86.2
Q ss_pred hccCcEEEEEecCCCCceEE--ecHHHHHHHHHHHHHHHHhccCCCc----EEEEEEEeecccccchhhhhhccccCcCC
Q 002153 528 QDKGVELAVYISDRVPETLI--GDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLS 601 (959)
Q Consensus 528 ~~k~I~l~~~i~~~~p~~v~--gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~ 601 (959)
..+.+.+...+..+.+ .+- .|...|.+++.|||+||++|++.++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~---------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE---------------------- 77 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE----------------------
Confidence 4567777766655443 232 3577899999999999999997754 4443321
Q ss_pred CCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCC----CcCcCCCccch
Q 002153 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIG 677 (959)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s----~s~~~~GtGLG 677 (959)
....+.|.|+|||+|||+++++++|+||++.+.- .++...|.|||
T Consensus 78 -------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 78 -------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred -------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 1123679999999999999999999999865321 12333455555
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCC-cEEEEEEEEeC
Q 002153 678 LSISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVFG 711 (959)
Q Consensus 678 LsI~k~LVe~mgG~I~v~S~~g~-GttF~~~lp~~ 711 (959)
|+++...+ .+||.|.+.|..+. +..+.+.+...
T Consensus 127 lai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 127 AAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred HHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 55555555 37888999999754 33343444443
No 59
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.19 E-value=3.9e-09 Score=110.18 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 002153 84 WWRKVLITWLLFWT--LVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAID 161 (959)
Q Consensus 84 w~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id 161 (959)
...-+|++.+-+++ +.|+-++...+...+++.|+...+..-..-.-|..++|.++..|+.|++...+ .|++.
T Consensus 14 ~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~e~------~P~~~ 87 (297)
T COG3452 14 LKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHWET------EPDMP 87 (297)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhheec------CCCch
Confidence 33444444333322 23333333344444445544444444444444444555555556666655554 46699
Q ss_pred HHHHHHHHhhhhhcCCCcceeeeecccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeE
Q 002153 162 QMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVI 241 (959)
Q Consensus 162 ~~~f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~ 241 (959)
|+.|+.-+......+.+.+.++=+|.. .+. -.||.+.|..++
T Consensus 88 Q~qw~~lA~a~~e~~~~lr~I~vaP~~--------------VV~------------------------~~yPl~~neaa~ 129 (297)
T COG3452 88 QQQWELLARAVFEDYDGLRNIAVAPSL--------------VVA------------------------RVYPLPGNEAAI 129 (297)
T ss_pred HHHhHHHHHHHhhccccceeeccCccc--------------EEE------------------------EEeecCCChhhc
Confidence 999998777666666666665522211 111 158899999999
Q ss_pred eeccccCcccHHHHHHHHHcCCceeeeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHHH
Q 002153 242 SLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (959)
Q Consensus 242 g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~l 321 (959)
|+|+..+|.-+.++.+||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.++||++.|.+..
T Consensus 130 gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 130 GLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred CcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEEEEEHHHHHHHh
Confidence 999999999999999999999999999999997 456999999999742 11 245789999999999998875
No 60
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.19 E-value=2e-10 Score=104.13 Aligned_cols=71 Identities=51% Similarity=0.677 Sum_probs=59.6
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002153 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (959)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~l 708 (959)
.+.|.|.|+|.|+++..+++.|.+|.. .......++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 467999999999999999999998721 12223446899999999999999999999999988999998763
No 61
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.18 E-value=1.2e-10 Score=138.61 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=64.4
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHc-CCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~m-gG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+.++|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+.+.+ ||.+.+.|.++.|++|++.+|+..
T Consensus 72 ~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 72 HYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred EEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEe
Confidence 46799999999999999999999998643311 134578999999999999885 667999999999999999998854
No 62
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.13 E-value=4.1e-10 Score=110.54 Aligned_cols=98 Identities=14% Similarity=0.297 Sum_probs=75.9
Q ss_pred ecHHHHHHHHHHHHHHHHhccC----CCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002153 548 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (959)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (959)
.|...+.+++.|+++||++|+. .|.|.|++...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~------------------------------------------- 71 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE------------------------------------------- 71 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe-------------------------------------------
Confidence 3567899999999999999852 35565555321
Q ss_pred CCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEE
Q 002153 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703 (959)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~Gtt 703 (959)
...+.++|.|+|.|||+ .+++|+||+..++ ..+++|+||++++++ .+++.+++.++.||+
T Consensus 72 ----------~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 72 ----------DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred ----------CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 11478999999999983 6789999986432 235899999998874 579999999999999
Q ss_pred EEEEE
Q 002153 704 FTFTA 708 (959)
Q Consensus 704 F~~~l 708 (959)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99864
No 63
>PRK03660 anti-sigma F factor; Provisional
Probab=99.05 E-value=1.9e-09 Score=106.87 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
|...+.+++.|++.||++|... +.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6678999999999999998632 4455544211
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF 704 (959)
...+.++|.|+|.||++ ..+.|+||++.++ ..++.|+||+|+++ +.+++.+++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 5688999986432 22578999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 002153 705 TFTAVFGN 712 (959)
Q Consensus 705 ~~~lp~~~ 712 (959)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998864
No 64
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.03 E-value=2.7e-08 Score=121.22 Aligned_cols=124 Identities=28% Similarity=0.465 Sum_probs=94.2
Q ss_pred ccCcEEEEEecCCCCceEEecHHHHHHH---HHHHHHHHHhcc-------------CCCcEEEEEEEeecccccchhhhh
Q 002153 529 DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 529 ~k~I~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT-------------~~G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
.|.++|.+.-.+ ...|..-+.++ |.+||.||+.|. +.|.|.+++.
T Consensus 411 gK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~-------------- 471 (716)
T COG0643 411 GKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY-------------- 471 (716)
T ss_pred CCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--------------
Confidence 466666654332 23488777776 789999999985 2466655543
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhH-------------------
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ------------------- 653 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~------------------- 653 (959)
++..++.|+|+|.|.||..+.+
T Consensus 472 ---------------------------------------~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 472 ---------------------------------------HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred ---------------------------------------cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCC
Confidence 1234688999999999998643
Q ss_pred -----hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 654 -----SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 654 -----~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
.-||.|-|.+....+ .-.|-|.||=+||+-++.+||.|.+.|++|+||+|++.+|+.
T Consensus 513 d~Ei~~LIF~PGFSTa~~Vt-dvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 513 DEEILNLIFAPGFSTAEQVT-DVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred HHHHHHHHhcCCCCcchhhh-cccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcH
Confidence 337999665443332 457999999999999999999999999999999999999985
No 65
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.99 E-value=2.2e-07 Score=100.85 Aligned_cols=192 Identities=12% Similarity=0.216 Sum_probs=136.8
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
.+.+...-.=.||-.-+++|.-.+.+.+.-..++..+...+.|+.-+.++..-+..+|..-|-- ...+.-+.+.
T Consensus 302 iRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~qa 375 (497)
T COG3851 302 IRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQA 375 (497)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccccHHHH
Confidence 3444555556678889999998888887765555556666777777777777777776544421 1223557788
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhcc
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~ 595 (959)
+..+++.+. ..++||...++...+....-..-+--+.++...+++|-+|+.+...|.+..+...
T Consensus 376 i~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~-------------- 439 (497)
T COG3851 376 IRSLLREME--LEERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQD-------------- 439 (497)
T ss_pred HHHHHHHhh--hhhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCC--------------
Confidence 888887664 4677887776654322110001122478888999999999999888877765322
Q ss_pred ccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 002153 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (959)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (959)
..+.++|+|+|+|+|+.. +-+|
T Consensus 440 ---------------------------------------e~l~Lei~DdG~Gl~~~~-------------------~v~G 461 (497)
T COG3851 440 ---------------------------------------ERLMLEIEDDGSGLPPGS-------------------GVQG 461 (497)
T ss_pred ---------------------------------------cEEEEEEecCCcCCCCCC-------------------CccC
Confidence 247899999999999641 3468
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002153 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (959)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp 709 (959)
.||.=.++=|..+||++.++| ..||...+++|
T Consensus 462 ~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 462 FGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred cCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 899999999999999999999 57999999998
No 66
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.98 E-value=2.2e-07 Score=106.66 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=84.7
Q ss_pred hhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCcc
Q 002153 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606 (959)
Q Consensus 527 a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~ 606 (959)
...-++..........+..-..-..-+.+|+.--++||+||+..-++.|++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~-------------------------- 307 (365)
T COG4585 254 EERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT-------------------------- 307 (365)
T ss_pred HhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc--------------------------
Confidence 344455555444321111111346778999999999999999888887776432
Q ss_pred ccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHH
Q 002153 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 686 (959)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe 686 (959)
...+.++|.|+|.|.+++.. +.|+||.=-|+=++
T Consensus 308 ---------------------------~~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~ 341 (365)
T COG4585 308 ---------------------------DDELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVE 341 (365)
T ss_pred ---------------------------CCEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHH
Confidence 12478999999999997522 15899999999999
Q ss_pred HcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 687 RMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 687 ~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
.+||++.+.|.||+||++++++|+
T Consensus 342 ~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 342 ALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HcCCEEEEEecCCCceEEEEecCC
Confidence 999999999999999999999984
No 67
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.95 E-value=2.9e-07 Score=97.82 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=131.4
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
.+..++.-+.|-++|-|+.|.+++.+-.....++ ..+.+...+.-...| .++.+.|..+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHHH
Confidence 4566778899999999999999988766554443 334444443333332 3345554432 1224577777
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEe-cHHHHHHHHHHHHHHHHhcc----CCCcEEEEEEEeecccccchhh
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIG-DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 590 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~g-D~~rL~QIL~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~i~i~ 590 (959)
++.+...+.+....+.+.+.....+++ .+-. -..-|--|+.-|+.||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 777777666654556677766654432 1211 23458889999999999996 36777777653211
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 002153 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (959)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (959)
.....+.|.|+|.|+|.+. |+
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~~---------- 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------PL---------- 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------CC----------
Confidence 0035789999999999752 11
Q ss_pred CCCccchHHHHHHHH-HHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 671 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 671 ~~GtGLGLsI~k~LV-e~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
...|+|+.+++.++ ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999988765 999999999854
No 68
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-08 Score=116.95 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=114.1
Q ss_pred EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCCcccccccCCCCCCCcccc
Q 002153 767 VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846 (959)
Q Consensus 767 ~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 846 (959)
.+.++.++++.+.. ..++.+++|..++.++.... ...++.... +.+++.+...+.+.....++ +....+.
T Consensus 17 ~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~---~~~lk~~~~---~~v~~t~~~~~~~~~~~~~~--~~~~~l~ 86 (435)
T COG3706 17 TAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFEL---CRRLKAEPA---TVVMVTALDDSAPRVRGLKA--GADDFLT 86 (435)
T ss_pred hccchHHHHHHHhc--CCCCeEEeecccCCcCchhH---HHHHhcCCc---ceEEEEecCCCCcchhHHhh--hhhhhcc
Confidence 36777788877644 57889999998887765443 333433321 22222222222222222222 5668899
Q ss_pred CCCChHHHHHHHHHHhcCCC------CCCcccCCCCcchhhhccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChH
Q 002153 847 KPLRSSMLAASLQRAMGVGN------KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 920 (959)
Q Consensus 847 KPl~~~~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~ 920 (959)
||+..+.+..-......... ............+.......++||+|||...++..+..+|...||++..+.+++
T Consensus 87 ~~~~~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~~~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~ 166 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPEDAPKKILVVDDDATQRERLRRILQVEGFRVVEATDGE 166 (435)
T ss_pred CCCChHHHHHhhhhhccchhhHHHHhhccccccccccccccccccCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHH
Confidence 99988776543322211000 000000000011100001457999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 921 KATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 921 eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+|+..+.+ .+||+||.|+.||+|||||+|+-..
T Consensus 167 ~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 167 EALLQLAE-LPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred HHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHh
Confidence 99999964 5999999999999999999998754
No 69
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.89 E-value=4.3e-09 Score=112.41 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=61.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+||||||++..+..+...|++.||+|+++.+|.+|++.+. .. ||+|++|++||+|||+++|+-.-
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR 66 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLR 66 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999996 45 99999999999999999998654
No 70
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.84 E-value=9.4e-07 Score=104.43 Aligned_cols=66 Identities=27% Similarity=0.302 Sum_probs=55.4
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC-ccchHHHHHHHHHHcCCE--EEEEEeCCCcEEEEEEEEeCC
Q 002153 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G-tGLGLsI~k~LVe~mgG~--I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+.++|.|+|+||+++....+.+. .++ .|+||+=+++.++.+-|. +.++|++++||+..+.+|...
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 578999999999999887766432 122 599999999999999887 589999999999999998753
No 71
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=98.83 E-value=1.3e-08 Score=97.91 Aligned_cols=68 Identities=37% Similarity=0.457 Sum_probs=62.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChH-HHHHHhCCCC-CccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~-eal~~~~~~~-~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||+|||++.++..+...|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||+++++-.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l 73 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRL 73 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 356899999999999999999999999999999996 9999995 45 59999999999999999999854
No 72
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-06 Score=99.86 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=130.1
Q ss_pred hhcchhhhHHHHHHHHHHH----HHhc---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 442 ATVSHEIRTPMNGVLGMLD----MLMD---TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 442 a~iSHEIRTPL~~I~g~le----lL~~---~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
+.|+.||---|+-.+.++. +|.. ....++.++.+..+....+.--.-+.++|.--|+.- ..-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRltL-------~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLTL-------QEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCchHH
Confidence 4566777777776666654 3332 233344566777777777766667777776655432 2346777
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecH---HHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhh
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 591 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~---~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~ 591 (959)
-++++++.|+. +.++.+.+++. .|... -|+ -.+-||+.-=++||+||+..-+|.|+++..
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~----------- 509 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQN----------- 509 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec-----------
Confidence 78888877764 45666666543 23211 233 357789999999999999988888877521
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcC
Q 002153 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671 (959)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~ 671 (959)
...+.+.|+|+|+|||+.. + +
T Consensus 510 ------------------------------------------~g~~~~~VeDnG~Gi~~~~-----e------~------ 530 (574)
T COG3850 510 ------------------------------------------DGQVTLTVEDNGVGIDEAA-----E------P------ 530 (574)
T ss_pred ------------------------------------------CCeEEEEEeeCCcCCCCcc-----C------C------
Confidence 1246799999999999751 1 1
Q ss_pred CCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 672 ~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
+| --||.|-+.=++.+||++.+++.+|+||++.+++|-
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~ 568 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPP 568 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEecc
Confidence 23 568999999999999999999999999999999863
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.74 E-value=1.3e-07 Score=95.69 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
|...++.++..++.||++|... |.|.|++...
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-------------------------------------------- 74 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-------------------------------------------- 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--------------------------------------------
Confidence 5567889999999999999853 4566555321
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF 704 (959)
...+.|.|.|+|+|++++.....|.||+...+.. ...+.|+||++++.|++. +.+.+ ..|++|
T Consensus 75 ---------~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 75 ---------EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ---------CCEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 1247899999999999999999999987654322 224679999999999986 66665 468999
Q ss_pred EEEEEeCCC
Q 002153 705 TFTAVFGNG 713 (959)
Q Consensus 705 ~~~lp~~~~ 713 (959)
+++-.+...
T Consensus 138 ~~~k~~~~~ 146 (161)
T PRK04069 138 SMTKYINRE 146 (161)
T ss_pred EEEEEcCch
Confidence 998777543
No 74
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=98.70 E-value=2.3e-08 Score=114.97 Aligned_cols=65 Identities=35% Similarity=0.425 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh--hCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~--~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..|+-++.++. +.|++++ +|.||+||++.+. ..+||+||+||.||+|||+++++..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~i 70 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAI 70 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHH
Confidence 79999999999999999985 6688766 8999999999996 5789999999999999999998864
No 75
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=5.7e-08 Score=106.63 Aligned_cols=68 Identities=32% Similarity=0.407 Sum_probs=63.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
..+||+|||.+.++..++..|+..||++..++||++|+++.. .+++|+||+|++||+|||+|+|+-..
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk 81 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLK 81 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHH
Confidence 358999999999999999999999999999999999999986 46799999999999999999998654
No 76
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.53 E-value=2e-05 Score=89.14 Aligned_cols=128 Identities=23% Similarity=0.356 Sum_probs=89.6
Q ss_pred eecHHHHHHHHHHHHhhh-hh-ccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhcc-----CCCcEEEEEEEee
Q 002153 509 SFNLRAILDDVLSLFSGK-SQ-DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLVE 581 (959)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~-a~-~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT-----~~G~I~v~v~~~~ 581 (959)
.+.|.+-++.+-...+-+ |+ ...+.+.+++++..-.. .=|.. ++.=|+.|||||. +.|.|.|+|...+
T Consensus 416 ~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d 490 (557)
T COG3275 416 IVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPSF---ILQPLVENAIKHGISQLKDTGRVTISVEKED 490 (557)
T ss_pred EeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCchh---hhhHHHHHHHHhcccchhcCCceEEEEEEeC
Confidence 456777777766555432 22 22344555554433211 11222 4566899999996 4577777775321
Q ss_pred cccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 002153 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (959)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (959)
..+++.|+|+|.||+++
T Consensus 491 -----------------------------------------------------~~l~i~VeDng~li~p~---------- 507 (557)
T COG3275 491 -----------------------------------------------------ADLRIEVEDNGGLIQPD---------- 507 (557)
T ss_pred -----------------------------------------------------CeEEEEEecCCCCcCCC----------
Confidence 23789999999999986
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCC---EEEEEEeCCCcEEEEEEEEeCC
Q 002153 662 QVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG---~I~v~S~~g~GttF~~~lp~~~ 712 (959)
...|+|+||+.+++=++.+=| -++++|.+..||+++|.+|+..
T Consensus 508 --------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 --------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred --------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 125899999999998888877 7899999999999999999864
No 77
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.47 E-value=3.6e-07 Score=105.52 Aligned_cols=65 Identities=34% Similarity=0.449 Sum_probs=61.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
.+||||||++..+..+...|+..||+|..+.|+.+|++.+.. ..||+|++|+.||+|||+++.+-
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-~~~~lvl~Di~mp~~~Gl~ll~~ 69 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-SPFDLVLLDIRMPGMDGLELLKE 69 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHH
Confidence 479999999999999999999999999999999999999965 47999999999999999999874
No 78
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.46 E-value=5.1e-05 Score=81.96 Aligned_cols=183 Identities=18% Similarity=0.235 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE---eecHHHHHHHHHHHHh
Q 002153 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV---SFNLRAILDDVLSLFS 524 (959)
Q Consensus 448 IRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~---~~dL~~ll~~vl~~~~ 524 (959)
|..-|-+..-.++++.....++.+ .-...+.+++.+|..-|+++..+|. . +.+. ..-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH----~--LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH----D--LRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc----c--cChhhhhhhhHHHHHHHHHHHhh
Confidence 445566677777877654433322 1224566777888888888876654 1 1111 1224444555555554
Q ss_pred hhhhccCcEEEEEecCCCCceEE-ecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCC
Q 002153 525 GKSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603 (959)
Q Consensus 525 ~~a~~k~I~l~~~i~~~~p~~v~-gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~ 603 (959)
+..|+++.+..+. .|..+. --...|.+|...-++|-=+++..-.|.|...
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------- 385 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------- 385 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec-------------------------
Confidence 6778888776643 233332 1245688888888899888875444443321
Q ss_pred CccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHH
Q 002153 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683 (959)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~ 683 (959)
.....+.+.|.|+|+|.+.+... ..-.||||--.++
T Consensus 386 ----------------------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrE 421 (459)
T COG4564 386 ----------------------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRE 421 (459)
T ss_pred ----------------------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHH
Confidence 11224789999999999875431 1226999999999
Q ss_pred HHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 684 LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
=+...||++.++|.|. ||..++.+|..
T Consensus 422 Rma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 422 RMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHhCceEEEEecCC-CcEEEEEecch
Confidence 9999999999999987 99999999985
No 79
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-05 Score=87.19 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=107.9
Q ss_pred eecHHHHHHHHHHHHhhhhhccCc---EEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC-----CCc----EEEE
Q 002153 509 SFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVT 576 (959)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I---~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-----~G~----I~v~ 576 (959)
.+++.++|+++.+..+..+..+=+ ++.+.-+......| .=|.-|.-++.-|+.||.++|- .|. |.|.
T Consensus 215 ~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~ 293 (414)
T KOG0787|consen 215 RCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVT 293 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 468999999999888776665532 23333333222221 3588999999999999999983 232 3333
Q ss_pred EEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhc
Q 002153 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656 (959)
Q Consensus 577 v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~I 656 (959)
|.. +...+.|.|+|.|-|||.+..+++
T Consensus 294 V~~-----------------------------------------------------gdeDl~ikISDrGGGV~~~~~drl 320 (414)
T KOG0787|consen 294 VAK-----------------------------------------------------GDEDLLIKISDRGGGVPHRDIDRL 320 (414)
T ss_pred Eec-----------------------------------------------------CCcceEEEEecCCCCcChhHHHHH
Confidence 321 112367889999999999999999
Q ss_pred cCCccccCCCCcC------cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 657 FTPFMQVGPSISR------THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 657 FepF~q~~~s~s~------~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
|.=-|.+.+..+. .-.|.|-||.|||.-.+..||++.+.|-.|-||-..+.+-.
T Consensus 321 f~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 321 FSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred HhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 9866544332222 22489999999999999999999999999999999998854
No 80
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.46 E-value=1.7e-06 Score=87.37 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCC
Q 002153 550 PGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (959)
Q Consensus 550 ~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (959)
...+.-++..++.||++|+.. |.|.|++...
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--------------------------------------------- 74 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY--------------------------------------------- 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe---------------------------------------------
Confidence 445888999999999999843 4566655321
Q ss_pred CCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEE
Q 002153 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705 (959)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~ 705 (959)
...+.+.|.|+|.|++++..++.|.|+...++.. ...+.|+||+|+++|++ ++.+.+ +.|++++
T Consensus 75 --------~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~ 138 (159)
T TIGR01924 75 --------EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVA 138 (159)
T ss_pred --------CCEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEE
Confidence 1247899999999999999888888876543322 23467999999999998 677776 4578888
Q ss_pred EEEEeC
Q 002153 706 FTAVFG 711 (959)
Q Consensus 706 ~~lp~~ 711 (959)
++..+.
T Consensus 139 l~k~~~ 144 (159)
T TIGR01924 139 MTKYLN 144 (159)
T ss_pred EEEEEc
Confidence 876554
No 81
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=98.41 E-value=6e-07 Score=83.90 Aligned_cols=64 Identities=33% Similarity=0.415 Sum_probs=60.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
||||||++..++.+...|+..|| .+..+.++.+|++.+. ++.||+|++|+.||+++|.++++..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i 65 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQI 65 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeecccccccccccc
Confidence 79999999999999999999999 9999999999999995 5789999999999999999998764
No 82
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.40 E-value=1e-06 Score=73.45 Aligned_cols=64 Identities=44% Similarity=0.760 Sum_probs=56.8
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002153 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (959)
+.+|++.++||+||||++|.++++.+.+...++...++++.+..+++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999887555666688999999999999999999999998765
No 83
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.34 E-value=9.2e-07 Score=113.57 Aligned_cols=69 Identities=29% Similarity=0.479 Sum_probs=62.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+++|||||||+.++..+..+|+..||.|.++.+|.+|++.+....+||+||||++||+|||+++++..
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~l 748 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQL 748 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 467899999999999999999999999999999999999987544579999999999999999998754
No 84
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.34 E-value=1.1e-06 Score=110.93 Aligned_cols=68 Identities=32% Similarity=0.509 Sum_probs=63.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++.++..+..+|++.||.+.++.||.+|++.+. .+.||+||||+.||+|||+++++..
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~i 591 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIAREL 591 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999985 5789999999999999999999754
No 85
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.29 E-value=1.5e-06 Score=111.59 Aligned_cols=67 Identities=34% Similarity=0.465 Sum_probs=62.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++.++..+...|+..||.+.++.+|.+|++.+. .+.||+||||++||+|||+++++..
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~i 756 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLW 756 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 458999999999999999999999999999999999999985 5789999999999999999999864
No 86
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.28 E-value=2.2e-06 Score=90.65 Aligned_cols=66 Identities=29% Similarity=0.288 Sum_probs=58.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC-CEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g-~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+|||+||.+..+.-++.+|+..+ ++|. .+.||.++++.+. ..+||+|+||+.||+|||+++++...
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~ 69 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLR 69 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-hcCCCEEEEcCCCCCCChHHHHHHHH
Confidence 69999999999999999998876 7755 5677999999974 68899999999999999999998754
No 87
>PLN03029 type-a response regulator protein; Provisional
Probab=98.28 E-value=2.2e-06 Score=91.41 Aligned_cols=68 Identities=28% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCC-------------------CCccEEEEcCCCCCCCH
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 946 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~-------------------~~~DlilmDi~MP~mdG 946 (959)
..+||||||++.++..+..+|+..||.+.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999987421 13679999999999999
Q ss_pred HHHHHHh
Q 002153 947 YLFCFFA 953 (959)
Q Consensus 947 ~e~~~~~ 953 (959)
+++++..
T Consensus 88 ~e~l~~i 94 (222)
T PLN03029 88 YDLLKKI 94 (222)
T ss_pred HHHHHHH
Confidence 9998754
No 88
>PF14501 HATPase_c_5: GHKL domain
Probab=98.26 E-value=1.4e-05 Score=74.11 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
|+.-|..+|.||++||+++... ..|.+.+..
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~--------------------------------------------- 36 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIRE--------------------------------------------- 36 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe---------------------------------------------
Confidence 4567889999999999999732 234443321
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF 704 (959)
....+.|.|+++-.+ +. ++++ +.+...++.|+||..++++++.++|.+.++++.+ .|
T Consensus 37 --------~~~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 37 --------ENGFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred --------cCCEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 113477889988544 11 2222 1234567899999999999999999999988754 56
Q ss_pred EEEEEe
Q 002153 705 TFTAVF 710 (959)
Q Consensus 705 ~~~lp~ 710 (959)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 665543
No 89
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=1.8e-06 Score=96.07 Aligned_cols=65 Identities=26% Similarity=0.304 Sum_probs=59.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
.+||||||....|+.++.+|...| ..|-++.||.+|++++. +..||+|.||+.||.|||+++++-
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~ 68 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRK 68 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHH
Confidence 389999999999999999999998 56678999999999996 588999999999999999999874
No 90
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.25 E-value=1.9e-06 Score=111.36 Aligned_cols=68 Identities=35% Similarity=0.520 Sum_probs=63.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+++|||||||+.++..+..+|+..||+|.++.||.+|++.+. ...||+||||++||+|||+++++..
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~i 768 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQL 768 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999996 4789999999999999999999864
No 91
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.13 E-value=3.2e-06 Score=89.99 Aligned_cols=64 Identities=34% Similarity=0.445 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
+|+||||+......+..+|++.|..+-.++...+|++.+. .+.||+||+|+.||.|+|+|+.+-
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQ 65 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQ 65 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHH
Confidence 7999999999999999999999999999999999999995 589999999999999999998764
No 92
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=98.10 E-value=7.3e-06 Score=84.17 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
++|||||++....+-+.+++.. ||.+. +|.++++|..++. ...|||||+|+-||+.+|++++.-
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ 67 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPE 67 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHH
Confidence 6999999999999999999876 78666 7899999999985 467899999999999999999764
No 93
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=98.08 E-value=1.1e-05 Score=85.93 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=59.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+.. |+. +..+.++.+|++.+. ...||+|++|+.||++||+++++..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l 72 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHEL 72 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 58999999999999999999864 784 678999999999985 4789999999999999999999865
No 94
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.06 E-value=2.8e-05 Score=83.27 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=88.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (959)
+++|+|||++.....+...|+..|++|..+.++.+|++.+... +|++++|..++..++ ...++++|.. ....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG---~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDG---LELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCH---HHHHHHHHhh-cCCCC
Confidence 4799999999999999999999999999999999999988765 999999988775543 3456677754 2233
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
|.+++.+.+...... ..-..|..+++.||+....|.+-++..+...
T Consensus 74 PIi~Lta~~~~~d~v--~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 74 PIIVLTARDDEEDRV--LGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred cEEEEECCCcHHHHH--HHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 555554432222111 1123367899999999999999888887644
No 95
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=98.05 E-value=3.1e-05 Score=72.23 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=83.7
Q ss_pred EEEeCCchhHHHHHHHHHHHcCC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 741 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 741 vLvvdd~~~~~~v~~~~l~~~G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
||+|||++..+..++..|+..|+ .|..+++..++++.+... .+|++++|..+... .....++.+++.. ..+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~---~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDG---DGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSS---BHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeeccc---ccccccccccccc--cccc
Confidence 68999999999999999999999 999999999999998664 49999999877653 3345677777765 3455
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHH
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l 858 (959)
++++............. ..|...++.||+..+.+.+.+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55555443333333333 337889999999999888765
No 96
>PRK11173 two-component response regulator; Provisional
Probab=98.05 E-value=1.6e-05 Score=84.89 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 69 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLAREL 69 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4689999999999999999999754
No 97
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.02 E-value=1.8e-05 Score=84.93 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||+|||++..+..+...|+..||.+..+.++.++++.+. ...||+|++|+.||.++|+++++..
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i 67 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSL 67 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999999885 4689999999999999999998764
No 98
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.00 E-value=2.1e-05 Score=82.91 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=60.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 67 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDL 67 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999999999999999999999875 4679999999999999999999764
No 99
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=97.99 E-value=1.7e-05 Score=90.05 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHH-hhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGL-KRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L-~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+| +..|+.+. .+.++.+|++.+. ...||+|+||+.||+|||+++++..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l 68 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRI 68 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHH
Confidence 7999999999999999999 46688886 7899999999985 5789999999999999999999865
No 100
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=97.97 E-value=2.4e-05 Score=83.59 Aligned_cols=65 Identities=29% Similarity=0.398 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~i 67 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDL 67 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999999999999999999999885 4689999999999999999998764
No 101
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=97.95 E-value=2.8e-05 Score=82.00 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=60.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~l 66 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRW 66 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999885 4689999999999999999998754
No 102
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=97.93 E-value=3.5e-05 Score=80.98 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||+|||++..+..+...|...||.+..+.++.+|++.+. ...||+|++|+.||.++|+++++..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 68 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTREL 68 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999885 4679999999999999999998765
No 103
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=97.93 E-value=3.6e-05 Score=82.14 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+|++|+.||.++|+++++..
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 71 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRL 71 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999885 4789999999999999999998765
No 104
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.93 E-value=3.4e-05 Score=63.53 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=52.5
Q ss_pred HHHHhHhhcchhhhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002153 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (959)
Q Consensus 436 aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (959)
.+.++.+.++||+||||+++.+.++.+.+... .+...+++..+..+++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999998876433 455678889999999999999999998864
No 105
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=6.2e-05 Score=84.59 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 002153 551 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630 (959)
Q Consensus 551 ~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (959)
..+.+++.||+.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 3578999999999999864 455554421 0
Q ss_pred ccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC------cCcCCCccchHHHHHHHHHHcCCEEEEEEeC--CCcE
Q 002153 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 702 (959)
Q Consensus 631 ~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~--g~Gt 702 (959)
....|+|.|+|.||++++++++|++|++.+... ...+|-.|.||+-...+ +++.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 013589999999999999999999999765432 12345568888644443 368888875 4455
Q ss_pred EEEEE
Q 002153 703 TFTFT 707 (959)
Q Consensus 703 tF~~~ 707 (959)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 54444
No 106
>PRK15029 arginine decarboxylase; Provisional
Probab=97.91 E-value=2e-05 Score=96.90 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=59.1
Q ss_pred EEEEEeCCHH--------HHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHH----HHHHHh
Q 002153 888 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY----LFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~--------~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~----e~~~~~ 953 (959)
+||||||+.. .++.+...|+..||+|..+.|+++|++.+.....||+||+|++||++||+ ++|+..
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 6999999995 68999999999999999999999999999532579999999999999998 777654
No 107
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=97.91 E-value=3.8e-05 Score=81.17 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||+++|+++++..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l 66 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKEL 66 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHH
Confidence 7999999999999999999999999999999999999874 369999999999999999998764
No 108
>PRK14084 two-component response regulator; Provisional
Probab=97.91 E-value=3.4e-05 Score=83.09 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC-C-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g-~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+|||+||++..+..+..+|+..+ + .+..+.++++|++.+. .+.||++|+|+.||+++|+++++..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i 68 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKI 68 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 69999999999999999999865 4 5778999999999885 4679999999999999999998764
No 109
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.90 E-value=2.3e-05 Score=103.69 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++.++..+..+|+..|+++.++.++.+|++.+. .+.||+||+|++||+|||+++++..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i 1024 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKL 1024 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 5789999999999999999998754
No 110
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=97.90 E-value=4.1e-05 Score=80.29 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=60.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|+..|+++..+.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l 68 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRL 68 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHH
Confidence 57999999999999999999999999999999999999885 4679999999999999999998764
No 111
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=97.89 E-value=4.4e-05 Score=80.69 Aligned_cols=65 Identities=26% Similarity=0.448 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||++||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~l 66 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRML 66 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999875 4679999999999999999999754
No 112
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=97.88 E-value=3.4e-05 Score=82.57 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=57.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|+..|. . +..+.++.++++.+. ...||++|+|+.||++||+++++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l 69 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGML 69 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHh
Confidence 3799999999999999999998873 3 446889999999885 4679999999999999999998765
No 113
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=97.88 E-value=4.4e-05 Score=79.94 Aligned_cols=66 Identities=27% Similarity=0.414 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+||+|||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~ 67 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWR 67 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999885 46799999999999999999987653
No 114
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=97.88 E-value=4.6e-05 Score=80.70 Aligned_cols=66 Identities=24% Similarity=0.232 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+...|+..|+++..+.++.+|++.+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 68 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHL 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999999885 4679999999999999999998764
No 115
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=97.87 E-value=3.9e-05 Score=83.67 Aligned_cols=66 Identities=30% Similarity=0.325 Sum_probs=57.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+|||+..+..+...|... ++.+. ++.+|.+|++.+. ...||+|++|+.||+|||+++++..
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i 70 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKL 70 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999864 55554 7899999999985 5789999999999999999998754
No 116
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=97.83 E-value=5.2e-05 Score=86.71 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=59.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++.++..+...|... |+.+. .+.++.+|++.+. ...||+|++|+.||+|||+++++-.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i 71 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKI 71 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHH
Confidence 48999999999999999999876 88887 8999999999885 4789999999999999999999753
No 117
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.81 E-value=8.2e-05 Score=75.18 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=60.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.-|-||||+...|+.+..+|+..||.+.+..++++-+... +...|..+|+|+.||+|+|.|+-+..
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L 70 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRL 70 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHH
Confidence 4699999999999999999999999999999999999985 35678999999999999999987654
No 118
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=97.81 E-value=7.1e-05 Score=78.60 Aligned_cols=65 Identities=26% Similarity=0.464 Sum_probs=60.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||+|||++..+..+...|+..|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l 66 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTL 66 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999885 4689999999999999999998765
No 119
>PRK15115 response regulator GlrR; Provisional
Probab=97.80 E-value=6.2e-05 Score=88.76 Aligned_cols=66 Identities=32% Similarity=0.422 Sum_probs=61.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++.++..+...|+..||.+..+.++.+|+..+. ...||+||+|+.||+|||+++++..
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l 71 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEI 71 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999885 5689999999999999999998754
No 120
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=97.78 E-value=8.2e-05 Score=78.54 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=60.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHhc
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGYLFCFFAG 954 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~--mdG~e~~~~~~ 954 (959)
++|||+||++..+..+...|+..||.+..+.++.+++..+. ...||++++|+.||+ ++|+++++...
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~ 69 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLR 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999885 467999999999998 58999987653
No 121
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=97.78 E-value=8e-05 Score=77.86 Aligned_cols=65 Identities=26% Similarity=0.429 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+|||+||++..+..+...|+..|+++..+.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i 66 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREW 66 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999885 4679999999999999999998754
No 122
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.78 E-value=7.1e-05 Score=88.10 Aligned_cols=66 Identities=30% Similarity=0.410 Sum_probs=61.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+. ...||+||+|+.||+++|+++++..
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~i 71 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEI 71 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999885 4679999999999999999988754
No 123
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.77 E-value=7.7e-05 Score=88.62 Aligned_cols=66 Identities=27% Similarity=0.327 Sum_probs=61.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~i 69 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQI 69 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999985 5689999999999999999988754
No 124
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=97.77 E-value=7.3e-05 Score=80.49 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEcChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~~~~-~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+|.. .|+.+. .+.++.+|++.+.. ...||+||+|+.||+|||+++++-.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l 71 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVL 71 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHH
Confidence 799999999999999999986 477654 78899999988742 3569999999999999999998754
No 125
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.76 E-value=0.00017 Score=83.73 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=90.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+.++...|+..|+.|..+.++.+|+..+... .+|+++.|..++..+ ...++..+++.. ..-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~---Gl~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMD---GLELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhC-CCCC
Confidence 4799999999999999999999999999999999999999887 699999998877443 233566666654 2225
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++.+.+.-.......+. |..+++.||+....+...+.+++..
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHH
Confidence 5555444332222222222 6779999999999999999998864
No 126
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00017 Score=81.24 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcEE----EEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEKGHIF----VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G~I~----v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
-...|-|++.-|+.||+.+|+.-+|. |.+...
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-------------------------------------------- 68 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-------------------------------------------- 68 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec--------------------------------------------
Confidence 34579999999999999999775443 333211
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCC-Cc-CcCCCccchHHHHHHHHHHcCCE-EEEEEeCCC-
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-IS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPNI- 700 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s-~s-~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g~- 700 (959)
+..++.+.|+|||+|||++..+++|-.+.-.+.- .. ...|-.|||.+-|--..+..-|+ +.+.|..+.
T Consensus 69 --------~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 69 --------GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred --------CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCC
Confidence 1235789999999999999999999775422111 11 12255799999999888988774 777776654
Q ss_pred cEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEE-eCCchh
Q 002153 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV-VDPRPI 749 (959)
Q Consensus 701 GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLv-vdd~~~ 749 (959)
++...+.+-.......+.... ...........|.+|-+ ++++..
T Consensus 141 ~~~~~~~l~id~~kNEp~Iv~-----r~~~~~~~~~hGT~Vel~~~~~~~ 185 (538)
T COG1389 141 GTAYEYELKIDVQKNEPEIVE-----RGEVENPGGWHGTRVELELKGVWY 185 (538)
T ss_pred cceEEEEEEecCCCCcchhhh-----cccccCCCCCCceEEEEEecccch
Confidence 777777765543322111111 11112233457888743 566644
No 127
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.75 E-value=8.5e-05 Score=87.86 Aligned_cols=67 Identities=31% Similarity=0.431 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||++.++.++.+|++.+. ...||+|++|+.||+++|+++++..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i 70 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEM 70 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 458999999999999999999999999999999999999885 5679999999999999999998753
No 128
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=97.67 E-value=0.00016 Score=75.91 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=60.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.||+++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l 69 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQL 69 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999885 4679999999999999999998754
No 129
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=97.65 E-value=0.00015 Score=75.62 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
||++||++..+..+...|...|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~ 65 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLR 65 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999885 46899999999999999999987653
No 130
>CHL00148 orf27 Ycf27; Reviewed
Probab=97.64 E-value=0.0002 Score=76.14 Aligned_cols=66 Identities=33% Similarity=0.513 Sum_probs=60.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||++||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l 72 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEI 72 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998765
No 131
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=97.64 E-value=0.00022 Score=72.82 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=60.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||++||++..+..+...|+..|+.+..+.++.++++.+. ...||++++|+.||.++|+++++..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l 69 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRL 69 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 58999999999999999999999999999999999998885 4679999999999999999988764
No 132
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.61 E-value=0.00013 Score=86.44 Aligned_cols=64 Identities=25% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+|++|+.||++||+++++..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l 64 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQI 64 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 689999999999999999999999999999999999885 4689999999999999999998754
No 133
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=97.61 E-value=0.00019 Score=74.37 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||+++|+++++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l 67 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETL 67 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 699999999999999999999999987 6999999999885 4679999999999999999988754
No 134
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=97.59 E-value=0.00027 Score=75.14 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=60.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||++||++..+..+...|...|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l 76 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREI 76 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998764
No 135
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.58 E-value=0.00055 Score=65.81 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
+...+.-++.-++.||++|+.. +.|.|.+..
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~--------------------------------------------- 62 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV--------------------------------------------- 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE---------------------------------------------
Confidence 3457889999999999999865 344444321
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF 704 (959)
+...+.++|.|+|.|+++.....--..- .......|+||.|++++++.+ .+ + .+.|++.
T Consensus 63 --------~~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 63 --------DPDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred --------cCCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 1124789999999999987654432110 023346799999999999875 45 3 7889998
Q ss_pred EEE
Q 002153 705 TFT 707 (959)
Q Consensus 705 ~~~ 707 (959)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 875
No 136
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=97.56 E-value=0.00095 Score=63.84 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=81.8
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHH-HHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~-~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
.+.+||+|||++..+..++..|+.+|+.+..+.++. +|++.+.... .+|++++|..++..+ ....++.+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467999999999999999999999999999999996 9999886643 588999999988554 44456666665 11
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHH-HHHHHHHH
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM-LAASLQRA 861 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~-l~~~l~~~ 861 (959)
..| ++++............ ...|...++.||+.... +...+.+.
T Consensus 79 ~~p-vv~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~ 123 (130)
T COG0784 79 NIP-VILLTAYADEADRERA-LAAGADDYLTKPIFLEEELLAALRRL 123 (130)
T ss_pred CCC-EEEEEcCcCHHHHHHH-HHcCCCeEEcCCCCcHHHHHHHHHHH
Confidence 225 4333332222211111 12356779999977666 56655543
No 137
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.54 E-value=0.00014 Score=90.38 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++.++..+...|...||.+..+.++.+|+..+. ...||+||+|+.||+|+|+++++..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l 73 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAV 73 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999999875
No 138
>PLN03029 type-a response regulator protein; Provisional
Probab=97.51 E-value=0.00075 Score=72.08 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=82.0
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcC------------------CCcccEEEEeccccccC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG------------------SKIINMILVEQEVWEKD 798 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~------------------~~~~~~ilid~~~~~~~ 798 (959)
...+||+|||++..+..+...|+.+|+.|..+.++.++++.+... ...+|++++|..++..+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 357899999999999999999999999999999999999987532 13578999998877654
Q ss_pred ccchHHHHHHHHhcCCCCC-ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHH
Q 002153 799 TSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQ 859 (959)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~ 859 (959)
+ ...+..++....... |.++ +............ ...|...++.||+....+.....
T Consensus 87 G---~e~l~~ir~~~~~~~ipvIi-ls~~~~~~~~~~a-l~~Ga~dyl~KP~~~~~L~~l~~ 143 (222)
T PLN03029 87 G---YDLLKKIKESSSLRNIPVVI-MSSENVPSRITRC-LEEGAEEFFLKPVQLSDLNRLKP 143 (222)
T ss_pred H---HHHHHHHHhccccCCCcEEE-EeCCCCHHHHHHH-HHhCchheEECCCCHHHHHHHHH
Confidence 3 345566665433223 4443 3322222222222 22367899999999888765543
No 139
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=97.51 E-value=0.00033 Score=72.04 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+...|+.. |+. +..+.++.++++.+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l 69 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQL 69 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999754 565 567899999999985 4679999999999999999998754
No 140
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=97.48 E-value=0.00025 Score=75.33 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=52.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHH
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFC 950 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~ 950 (959)
..++++|||++..+..++..|+. ++. +..+.++.+|++.+. +||+||||+.||+++|++++
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~ 71 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYW 71 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHH
Confidence 35799999999999999999984 454 457789999998753 39999999999999999986
No 141
>PRK09483 response regulator; Provisional
Probab=97.47 E-value=0.00036 Score=73.02 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+|||+||++..+..+...|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l 69 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKI 69 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999874 88876 7899999999885 4679999999999999999998754
No 142
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=97.46 E-value=0.00037 Score=73.57 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=55.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC---EEEEEcChHHHHHHhCCCCCccEEEEcCC--CCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~---~v~~a~~g~eal~~~~~~~~~DlilmDi~--MP~mdG~e~~~~~ 953 (959)
.||||||++..+..++.+|+..++ .+..+.++.+++..+. ..+||+||||+. ||.+||.++++..
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i 71 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQI 71 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHH
Confidence 599999999999999999987653 3457899999999885 467999999966 8888999988753
No 143
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.45 E-value=0.00059 Score=87.60 Aligned_cols=119 Identities=22% Similarity=0.319 Sum_probs=88.2
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+.++|||||++.++.+++..|+.+|+.|..+.++.+|++.+.. ..+|++++|..++.+++ ....+.+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG---~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDG---YRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999999865 46999999998876553 334556665432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
..|.+++.+... .... ......|+..++.||+....+...+.+..
T Consensus 873 ~~pII~lTa~~~-~~~~-~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 TLPVIGVTANAL-AEEK-QRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CCCEEEEECCCC-HHHH-HHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 124444433322 2222 22233478899999999999999887654
No 144
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=97.42 E-value=0.00057 Score=70.81 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=58.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l 71 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRI 71 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999876 57775 6889999998875 4689999999999999999988764
No 145
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=97.40 E-value=0.0005 Score=72.65 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=57.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEcChHHHHHHhCCCCCccEEEEcCCCCC---CCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~---mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|+++++-.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 4899999999999999999987665 3 667899999999885 467999999999999 5999998754
No 146
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=97.35 E-value=0.00071 Score=70.68 Aligned_cols=66 Identities=30% Similarity=0.403 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+||++||++.....+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~ 67 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLR 67 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 6999999999999999999999999999999999998875 46799999999999999999987653
No 147
>PRK09191 two-component response regulator; Provisional
Probab=97.32 E-value=0.00076 Score=73.16 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=59.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~-mdG~e~~~~~ 953 (959)
..+|||+||++..+..+...|+..|+.+. .+.++.++++.+. ...||+||+|+.||+ +||+++++-.
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l 205 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDI 205 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHH
Confidence 34799999999999999999999999987 7899999999985 467999999999995 8999987643
No 148
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.31 E-value=0.0013 Score=84.78 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=89.7
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+.++|+|||++.++..++..|+.+|+.|..+.++.+|++.+.. ..+|++++|..++..++ ...++.+++....
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g---~~~~~~lr~~~~~ 739 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDG---IRACELIRQLPHN 739 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcH---HHHHHHHHhcccC
Confidence 346799999999999999999999999999999999999998865 56999999998876553 3345566654332
Q ss_pred CC-ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.. |.+++.+. ....... .....|+..++.||+....+...+.+.+..
T Consensus 740 ~~~pii~lt~~-~~~~~~~-~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 740 QNTPIIAVTAH-AMAGERE-RLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CCCCEEEEeCC-CCHHHHH-HHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 23 44443322 2222121 222337889999999999999999887753
No 149
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.25 E-value=0.00061 Score=80.36 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=56.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC-----CCHHHHHHHh
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGYLFCFFA 953 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~-----mdG~e~~~~~ 953 (959)
||||||++..+..+...| .||.+.++.++.+|++.+. ...||+||+|+.||+ +||+++++-.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 689999999999999888 6999999999999999995 468999999999996 8999988753
No 150
>PRK13435 response regulator; Provisional
Probab=97.23 E-value=0.0013 Score=64.58 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP-~mdG~e~~~~~ 953 (959)
..+|||+||++.....+...|+..|+.+. +++++.++++.+. ...||+|++|+.|| +++|.++.+..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRL 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHH
Confidence 35899999999999999999999999987 7899999999875 46799999999998 59999988764
No 151
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=97.19 E-value=0.0014 Score=72.79 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=83.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
-.++++|||.+.+.+.++..|+..|+.+..+.++.+|+....... +|+++.|..++.+++.. .+++++...+...
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~e---v~~~lk~~~p~t~ 88 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAE---VLNKLKAMSPSTR 88 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHH---HHHHHHhcCCccc
Confidence 468999999999999999999999999999999999998876554 99999999988776443 5566666333222
Q ss_pred --ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHH
Q 002153 818 --SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (959)
Q Consensus 818 --~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l 858 (959)
|.+++. +....+.....-..|+..++.||+....+..-.
T Consensus 89 ~ip~i~lT--~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 89 RIPVILLT--AYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred ccceEEEe--ecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 444443 333322222222247889999999987765544
No 152
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=97.17 E-value=0.0013 Score=64.04 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=60.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
+..|||||+......+...+++.||.|.+|.+..||+..+. ...|...+.|+.|.+-+|+++++.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~ 74 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEA 74 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHH
Confidence 47999999999999999999999999999999999999995 578999999999999999998764
No 153
>PRK09581 pleD response regulator PleD; Reviewed
Probab=97.15 E-value=0.0013 Score=77.16 Aligned_cols=65 Identities=32% Similarity=0.441 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||++||++..+..+...|...|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i 68 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRL 68 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999989999999999999999985 4679999999999999999998864
No 154
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=97.09 E-value=0.0029 Score=58.60 Aligned_cols=67 Identities=30% Similarity=0.312 Sum_probs=59.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
.+||++|+++.....+...|+..|+ .+.++.++.+++..+. ...||++++|..+|.++|+++++...
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~ 73 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIR 73 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 5899999999999999999999998 4778999999999875 46799999999999999999887543
No 155
>PRK13557 histidine kinase; Provisional
Probab=97.00 E-value=0.0021 Score=77.08 Aligned_cols=69 Identities=30% Similarity=0.414 Sum_probs=61.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~-mdG~e~~~~~ 953 (959)
.+++|||+||++..+..+..+|+..||.+..+.++.+|++.+.....||+|++|..||+ ++|+++++..
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l 483 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREA 483 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999998853336999999999997 9999988754
No 156
>PRK10403 transcriptional regulator NarP; Provisional
Probab=96.97 E-value=0.0027 Score=65.68 Aligned_cols=66 Identities=26% Similarity=0.222 Sum_probs=57.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|+.||.++|+++++..
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l 74 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNAL 74 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHH
Confidence 4799999999999999999975 577775 6889999999874 4679999999999999999998754
No 157
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.94 E-value=0.0055 Score=70.85 Aligned_cols=118 Identities=23% Similarity=0.253 Sum_probs=85.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||+..+++.++..|+..|+.|..+.++++|+..+.+- ++|.+++|..++..+. ..+...+|+......
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg---~el~~~lr~~~~t~~ 206 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDG---LELCTRLRQLERTRD 206 (435)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCH---HHHHHHHhccccccc
Confidence 46899999999999999999999999999999999999998765 8999999988876653 445566666544333
Q ss_pred -ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 818 -~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
|.+++. +.+........-..|...+++||+....+.+-+.+.+
T Consensus 207 ipii~~~--~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l 250 (435)
T COG3706 207 IPIILLS--SKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQL 250 (435)
T ss_pred ccEEEEe--cccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHH
Confidence 444333 2222222222223378899999998777665555444
No 158
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=96.89 E-value=0.0098 Score=62.18 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=83.5
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.+++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....+..++.......
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~ 76 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRA 76 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCC
Confidence 3579999999999999999999999999999999999988754 4589999998775543 2345556665322223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++++............ -..|...++.||+....+...+..++..
T Consensus 77 ~~ii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 77 IPIIMLTARGEEEDRVRG-LETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred CCEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 233333322221111111 2236778999999999999888877643
No 159
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=96.89 E-value=0.0037 Score=64.10 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=56.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||++||++..+..+...|... ++.+ ..+.++.++++... ...||+|++|+.||.++|+++++..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l 71 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQL 71 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999875 4664 47889999998774 4679999999999999999987754
No 160
>PRK10651 transcriptional regulator NarL; Provisional
Probab=96.88 E-value=0.0034 Score=65.10 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=57.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|... ++.+ ..+.++.+++..+. ...||++++|+.||+++|+++++..
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l 74 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKL 74 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 48999999999999999999865 5654 46889999999885 4679999999999999999998764
No 161
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.88 E-value=0.0039 Score=73.90 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=99.4
Q ss_pred EEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceE
Q 002153 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (959)
Q Consensus 741 vLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (959)
||+|||++..+..+...|+..|+.|..++++.+|+..+.. ..+|++++|..++..+. ...+..++.... ...+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g---~~ll~~l~~~~~--~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDG---LDLLPQIKKRHP--QLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCH---HHHHHHHHHhCC--CCeE
Confidence 5899999999999999999999999999999999988754 46899999988765432 334555554321 2333
Q ss_pred EEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCEEEEEeCCHHHHH
Q 002153 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900 (959)
Q Consensus 821 ~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILivdDn~~~~~ 900 (959)
+++............ ...|...++.||+....+...+..++......... . ......+....++.+++.+++
T Consensus 74 Ivlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAA-YQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHH-HHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 333322221111111 22367789999999999998887766422110000 0 000011123458889999888
Q ss_pred HHHHHHhhCC
Q 002153 901 VAAAGLKRYG 910 (959)
Q Consensus 901 ~l~~~L~~~g 910 (959)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877655443
No 162
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=96.85 E-value=0.011 Score=62.44 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=82.7
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..+++.......
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 579999999999999999999999999999999999987754 4689999998765433 23355566653222232
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... -..|...++.||+....+...+..++.
T Consensus 78 pvi~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRG-LETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 23333322222111111 223677899999999999888887764
No 163
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=96.85 E-value=0.0016 Score=66.39 Aligned_cols=66 Identities=27% Similarity=0.301 Sum_probs=56.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.++|++||++.++..+...|...||.++ ++.++.++.+... .++||+||||+.||..|-.+....+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~~~ 72 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALLLA 72 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHHHh
Confidence 5899999999999999999999999655 8889999999885 5899999999999999955554443
No 164
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=96.83 E-value=0.011 Score=62.44 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=82.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..++..|+..|+.+..+.++.+++..+.. .+|++++|..+...+ ....+..++.... .|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~--~~ 73 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ--TP 73 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC--Cc
Confidence 379999999999999999999999999999999999987742 589999998775433 2345566665432 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.++ +............ -..|...++.||+....+...+..++..
T Consensus 74 ii~-lt~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 74 VIM-LTARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred EEE-EECCCCHHHHHHH-HHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 333 3322222111111 2336778999999999999888877753
No 165
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=96.78 E-value=0.0071 Score=61.51 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=86.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.-|-||||+...++-+..+|+..|++|...+|+++-+... .......+++|..|+...+ ..+...+...+. .-|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~--~~~~pGclllDvrMPg~sG---lelq~~L~~~~~-~~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA--PLDRPGCLLLDVRMPGMSG---LELQDRLAERGI-RLP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc--cCCCCCeEEEecCCCCCch---HHHHHHHHhcCC-CCC
Confidence 4588999999999999999999999999999999888762 2344567888988876543 334555655432 126
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
.+++...+--+......+. |..++|.||++.+.+.+++++++...
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHHH
Confidence 6666544433333333333 56789999999999999999988653
No 166
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.77 E-value=0.0068 Score=45.90 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
++++++|++..+..+...+...|+.+..+.++.++...+. .+.||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999988774 45799999998765
No 167
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.77 E-value=0.004 Score=79.47 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCC-CCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~-~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+|||||||+.++..+...|+..||+++.+.++.+|++.+... ..||+||+ .||.|+|+++++..
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l 763 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAAL 763 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999999999988432 34899999 79999999988754
No 168
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=96.71 E-value=0.037 Score=57.65 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=81.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
+++++|||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++.... ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~~~-~~p 74 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDED---GLHLLRRWRQKKY-TLP 74 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCc
Confidence 479999999999999999999999999999999999987754 4579999998765443 2334555655321 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++ ............ -..|...++.||+....+.+.+...+..
T Consensus 75 ii~l-s~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 75 VLIL-TARDTLEDRVAG-LDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred EEEE-ECCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 4443 322221111111 2236778999999999998888877643
No 169
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=96.70 E-value=0.0079 Score=62.35 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=79.7
Q ss_pred eEEEeCCchhHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 740 KALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+||+|||+|..+++.+.+++.. |+++ -++.++++|...+..... |+||+|--+++..+ ..++..++...+ +
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~G---i~lL~~ir~~~~--~ 74 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGNG---IELLPELRSQHY--P 74 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccCCCcc---HHHHHHHHhcCC--C
Confidence 7999999999999999999885 5655 467899999999876443 99999988776543 335666665432 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.-++++ ++.+..+.-...-..|+.+++.||+...++..+|.+-.
T Consensus 75 ~DVI~i-TAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 75 VDVIVI-TAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred CCEEEE-eccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 223332 33332222222223378899999999999998886543
No 170
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=96.69 E-value=0.018 Score=61.29 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=83.8
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~-~~~ 78 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN-NPT 78 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999887754 5689999998765443 233455665532 112
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
|.+++ ............ -..|...++.||+....+.+.+...+..
T Consensus 79 pii~l-s~~~~~~~~~~~-l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 79 PIIML-TAKGEEVDRIVG-LEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CEEEE-ECCCcHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 44443 322222111111 2236778999999999999988887754
No 171
>PRK11173 two-component response regulator; Provisional
Probab=96.66 E-value=0.017 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=82.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ..|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~p 76 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKN---GLLLARELREQA--NVA 76 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCC---HHHHHHHHhcCC--CCC
Confidence 589999999999999999999999999999999999988754 4689999998775533 233455565431 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++. ........... -..|...++.||+....+...+...+..
T Consensus 77 ii~lt-~~~~~~~~~~~-~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 77 LMFLT-GRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred EEEEE-CCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 44433 22222111111 2236778999999999988777766643
No 172
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=96.63 E-value=0.012 Score=61.93 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++++++||++..+..+...|+..|+.|..+.++.+++..+.. ..+|++++|..+...+ ....+..++.... ..|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~~-~~p 74 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSANK-GMP 74 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 479999999999999999999999999999999999887644 4589999998765443 2335556665321 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.++ +............ -..|...++.||+....+...+...+..
T Consensus 75 ii~-ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 75 ILL-LTALGTIEHRVKG-LELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEE-EEcCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 443 3322222111111 2236778999999999999888877643
No 173
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.62 E-value=0.0091 Score=73.26 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCc
Q 002153 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (959)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (959)
++..++..||.||+.+. ...|.|.+..
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~---------------------------------------------------- 48 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE---------------------------------------------------- 48 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe----------------------------------------------------
Confidence 57789999999999975 4456555521
Q ss_pred cCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.....|+|.|+|.||+++++..+|.++++.+-... ...|=-|.||+-...+ .++.+.|..+
T Consensus 49 --~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~ 115 (617)
T PRK00095 49 --GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTA 115 (617)
T ss_pred --CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecC
Confidence 01246999999999999999999999875433221 1234456777644443 4678888763
No 174
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=96.59 E-value=0.019 Score=62.51 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=82.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.++|++||++..+..++..|+.. ++.+ ..+.++.++++.+.. ..+|++++|..++..++ ...+..++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG---~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDG---IGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccc
Confidence 58999999999999999999864 5554 478999999998764 45899999988865543 33455555543322
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+.++++......... ......|...++.||+....+...+.++...
T Consensus 78 ~~~iI~lt~~~~~~~~-~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQEKIT-QRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCHHHH-HHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3445544332221111 1122336778999999999999999887653
No 175
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=96.58 E-value=0.014 Score=62.70 Aligned_cols=116 Identities=19% Similarity=0.343 Sum_probs=79.6
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+||+|||++..+..++..|+.. |+.+ ..++++.+++..+......+|++++|..++..++ ...+..+++..+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G---~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENG---LDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCc---HHHHHHHHhhCC--
Confidence 47999999999999999999874 7764 5788999999887655566899999988765443 335566665422
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (959)
..+++++............ -..|...++.||.....+..++.+
T Consensus 77 ~~~vI~ls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 77 KSDVIVISSAADAATIKDS-LHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred CCCEEEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHH
Confidence 2334444332222222122 223677899999999999888865
No 176
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=96.55 E-value=0.014 Score=61.26 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=82.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
+++|++||++.....+...|+..|+.|..+.++.+++..+.. ..+|++++|..++..+ ....+..++.... ..|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~~-~~p 74 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSNDV-SLP 74 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 479999999999999999999999999999999999987754 4689999998765433 2335556655321 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++. ........... -..|...++.||+....+.+.+...+..
T Consensus 75 ii~ls-~~~~~~~~~~~-l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 75 ILVLT-ARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEEE-cCCCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 44433 22221111111 2236778999999999999888877653
No 177
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.0077 Score=70.18 Aligned_cols=115 Identities=17% Similarity=0.317 Sum_probs=83.8
Q ss_pred eEEEeCCchhHHHHHHHHHHH--cCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 740 KALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~--~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
+||+|||.+..++-++..+.. +|+.+. +|.+|.+|++.++. ..+|++++|-.|+.+++.. +++.++... +
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLd---LI~~ike~~--p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLD---LIKAIKEQS--P 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHH---HHHHHHHhC--C
Confidence 799999999999999988755 677664 68899999999866 6789999999998876433 455666532 2
Q ss_pred CceEEEEecCCCcccccccC--CCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTST--DGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~--~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+...+++. +.+ +.+-++ -..|+.++|.||+....|..+|.++.+.
T Consensus 76 ~~~~IILS-Gy~--eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 76 DTEFIILS-GYD--EFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CceEEEEe-ccc--hhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 34555543 222 222222 2236678999999999999999888763
No 178
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=96.53 E-value=0.018 Score=59.98 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=81.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++++++||++.....+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....+..++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 379999999999999999999999999999999999887754 4589999998765432 233555666532 122
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... -..|..+++.||+....+...+..++.
T Consensus 74 ~ii~lt~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERVEG-LRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 33333322221111111 223677899999999999888877764
No 179
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=96.52 E-value=0.058 Score=56.62 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ..|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~p 74 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQWS--AIP 74 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcCC--CCC
Confidence 479999999999999999999999999999999999877644 4589999998776543 233455665431 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++... ...... ...-..|...++.||+....+.+.+...+.
T Consensus 75 vi~lt~~-~~~~~~-~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 75 VIVLSAR-SEESDK-IAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred EEEEECC-CCHHHH-HHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4443322 211111 111223677899999999999888877664
No 180
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=96.48 E-value=0.027 Score=58.96 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=81.3
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..+...|+..|+.|..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ..|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~~ 75 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS--TVG 75 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCC
Confidence 579999999999999999999999999999999999987754 4589999998765433 233555666532 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.++ ++........... -..|...++.||+....+...+...+.
T Consensus 76 ii~-l~~~~~~~~~~~~-l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 76 IIL-VTGRTDSIDRIVG-LEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred EEE-EECCCcHHHHHHH-HHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 443 3322222211111 223677899999999998888776654
No 181
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=96.47 E-value=0.01 Score=52.24 Aligned_cols=63 Identities=35% Similarity=0.419 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 890 LivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
|++|+++..+..+...+...|+.+..+.+..++...+. .+.||++++|..++..+|++..+..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l 63 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRI 63 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHH
Confidence 47899999999999999998999999999999999885 4689999999999999999988654
No 182
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.45 E-value=0.0038 Score=79.59 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=47.0
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHH
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~ 947 (959)
+.|.+||||||++.++.++..+|++.||+|.++.++. ....||+||||++| .++|+
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~-------~~~~~Dlvl~D~~~-~~~~~ 742 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL-------ISQEYDIFLTDNPS-NLTAS 742 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc-------cCCCCCEEEECCCC-cCCCc
Confidence 4678999999999999999999999999999998642 23579999999994 44444
No 183
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.42 E-value=0.028 Score=55.90 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHhccCC-----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (959)
|-.+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 6778999999999999999865 77776664321
Q ss_pred CCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCc
Q 002153 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701 (959)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~G 701 (959)
..+.+.|.|.|+||.+- .+.+.|-+.. ...-..-|+||.+.+++++ ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~~--~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIEDL--EESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCCH--HHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 23789999999887653 4455555321 1111234889999998775 57788555553
No 184
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=96.42 E-value=0.03 Score=58.53 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=81.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....+..++... ..|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~--~~~ 73 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTAK--QTP 73 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcCC--CCC
Confidence 479999999999999999999999999999999999988754 5689999998766543 233455555432 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.++ +........... .-..|...++.||+....+...+...+.
T Consensus 74 ii~-ls~~~~~~~~~~-a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 74 VIC-LTARDSVDDRVR-GLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred EEE-EECCCCHHHHHH-HHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 443 332222211111 1223677899999999999888887764
No 185
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=96.41 E-value=0.024 Score=60.38 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=81.8
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ..|.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~~--~~pi 75 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPKW--QGPI 75 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCCE
Confidence 79999999999999999999999999999999999988754 4689999998776543 233455665521 1244
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+++. ........... -..|...++.||+....+...+...+..
T Consensus 76 i~l~-~~~~~~~~~~~-~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 76 VLLT-SLDSDMNHILA-LEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEEE-CCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 4433 22222111111 2236778999999999998888776643
No 186
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=96.40 E-value=0.02 Score=61.01 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=81.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHc-CC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~-G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+++++||++..+..++..|++. |+ .|..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~- 77 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY- 77 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-
Confidence 368999999999999999999874 78 47889999999988854 4579999998876544 2335566665322
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
...+++++........... -..|...++.||+....+..+++++.
T Consensus 78 -~~~iivls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 -PGDVVFTTAASDMETVSEA-VRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred -CCCEEEEEcCCCHHHHHHH-HHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2234444332222111111 22367789999999999999887754
No 187
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=96.36 E-value=0.034 Score=58.60 Aligned_cols=121 Identities=10% Similarity=0.137 Sum_probs=82.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC-E-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~-~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
+.+++++||++..+..++..|+..+. . +..+.++.+++..+.. ..+|++++|..+...........+..+++..+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~- 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHFP- 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCC-
Confidence 36899999999999999999988765 3 6778999999988754 45799999987654210122345666665322
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++............ ...|...++.||.....+..++..+..
T Consensus 80 -~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 80 -SLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -CCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 2344444433222221122 233778999999999999999988774
No 188
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=96.36 E-value=0.042 Score=57.51 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=82.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999999999999999999999999999999887753 4589999998765433 234556666532 122
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+++++........... .-..|...++.||+....+...+..++..
T Consensus 77 ~ii~ls~~~~~~~~~~-a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 77 PVIFLTARSDEVDRLV-GLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred CEEEEEcCCcHHHHHH-HhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 3333332222211111 12336778999999999999888877643
No 189
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=96.33 E-value=0.066 Score=60.84 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred ceEEEeCCchhHHHHHHHHH-HHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l-~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
+++|+|||++..+..++..| +..|+.+. .++++.+++..+.. ..+|++++|..+...+.. ..++.++....
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~---e~l~~l~~~~~-- 73 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGV---EATRRIMAERP-- 73 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHH---HHHHHHHHHCC--
Confidence 37999999999999999999 57889886 78999999998864 568999999887655432 34455544221
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCC---------ChHHHHHHHHHHh
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 862 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl---------~~~~l~~~l~~~~ 862 (959)
.|.+++.................|...++.||. ....+...+....
T Consensus 74 ~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 74 CPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 244444322211111111112236778999999 3444555554444
No 190
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=96.32 E-value=0.0077 Score=65.27 Aligned_cols=66 Identities=30% Similarity=0.418 Sum_probs=55.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+|+++||++..+..+...+... ++++. .+.++.++++.+. ...+|++|+|+.||+|+|+++.+...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fldI~~~~~~G~ela~~i~ 70 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-GLRPDLVFLDIAMPDINGIELAARIR 70 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-ccCCCeEEEeeccCccchHHHHHHhc
Confidence 7999999999999999998832 23333 6889999999986 46899999999999999999987643
No 191
>PRK13856 two-component response regulator VirG; Provisional
Probab=96.31 E-value=0.032 Score=59.74 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=81.5
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
++|+|||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....+..++... ..|.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~~--~~pi 75 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATKS--DVPI 75 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCcE
Confidence 79999999999999999999999999999999999887644 4689999998775443 233455565432 1244
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+++............. -..|...++.||+....+...+..++..
T Consensus 76 i~lt~~~~~~~~~~~~-l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 76 IIISGDRLEEADKVVA-LELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EEEECCCCcHHHHHHH-HhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 4433222121111111 2236778999999999988888776643
No 192
>CHL00148 orf27 Ycf27; Reviewed
Probab=96.27 E-value=0.044 Score=58.02 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.++++++||++.....+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....+..++.. ...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~~~ 78 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--SDV 78 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCC
Confidence 4689999999999999999999999999999999999987754 4589999998776543 23345555543 122
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
|.+++. ........... -..|...++.||+....+...+..++.
T Consensus 79 ~ii~ls-~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 79 PIIMLT-ALGDVSDRITG-LELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred cEEEEE-CCCCHHhHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 444433 22221111111 123667899999999999988877764
No 193
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=96.26 E-value=0.047 Score=57.42 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=80.9
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+..... .....+..++.... ..|.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~-~g~~~~~~i~~~~~-~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEID-GGFMLCQDLRSLSA-TLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCC-CHHHHHHHHHhcCC-CCCE
Confidence 68999999999999999999999999999999999988754 45799999987654211 12334556665321 1244
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+++ +........... -..|...++.||.....+...++.++.
T Consensus 78 i~l-s~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 78 IFL-TARDSDFDTVSG-LRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEE-ECCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 443 322222111111 233677899999999999888877764
No 194
>PRK15115 response regulator GlrR; Provisional
Probab=96.21 E-value=0.02 Score=67.58 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=83.7
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..+...|+..|+.|..+.++.+|+..+.. ..+|++++|..+...+ ....+..++...+ .
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~~--~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQP--G 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcCC--C
Confidence 3689999999999999999999999999999999999988764 4579999998776543 2334555554321 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++.......... ....|...++.||+....+...+..++.
T Consensus 78 ~pvIvlt~~~~~~~~~~-a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVA-ATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHH-HHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 33333333222111111 2233677899999999999998887764
No 195
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.17 E-value=0.02 Score=67.47 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=82.4
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+|++|||++..+..+...|+.+|+.+..+.++.+++..+.. ..+|++++|..++..+ ....+..+++.. ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999988764 4589999998876543 233455555432 12
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... -..|...++.||+....+..++..++.
T Consensus 78 ~~vi~lt~~~~~~~~~~a-~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEA-LKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHHH-HHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 333333322211111111 123567899999999999888877654
No 196
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.13 E-value=0.027 Score=67.03 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..++..|+..|+.|..+.++.+|+..+.. ..+|++++|..++..+ ....++.++.... ..|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~~-~~p 77 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRHP-MLP 77 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhCC-CCe
Confidence 489999999999999999999999999999999999998864 4589999998876543 2334556655321 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++ +........ ......|...++.||+....+...+..++.
T Consensus 78 vIvl-t~~~~~~~~-~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 78 VIIM-TAHSDLDAA-VSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred EEEE-ECCCCHHHH-HHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 4433 322221111 112233677899999999988887776654
No 197
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=96.09 E-value=0.037 Score=57.08 Aligned_cols=117 Identities=10% Similarity=0.205 Sum_probs=81.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
++++++||++..+..+...|+..|+.+. .+.++.+++..+.. ..+|++++|..+...+ ....+..++.... .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 4789999999999999999999999987 68999999988764 4689999998765433 2334556655321 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..++++............ ...|...++.||+....+...+..+..
T Consensus 74 ~~ii~ls~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGKHC-ADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHHHH-HHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 223333332222111111 223677899999999999999988764
No 198
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=96.07 E-value=0.012 Score=62.24 Aligned_cols=54 Identities=6% Similarity=-0.034 Sum_probs=44.1
Q ss_pred HHHHHHHHhh---CCCEEEEEcChHHHHHHhCCCCCccEEE---EcCCCCCCCHHHHHHHh
Q 002153 899 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 899 ~~~l~~~L~~---~g~~v~~a~~g~eal~~~~~~~~~Dlil---mDi~MP~mdG~e~~~~~ 953 (959)
|.-+..+|.+ .|+.+.++.++.++++.+. ...||+++ +|+.||++||+++++-.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l 62 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTEL 62 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHH
Confidence 4566777764 4777789999999999885 46789998 78899999999998764
No 199
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.05 E-value=0.05 Score=57.67 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=83.2
Q ss_pred eEEEeCCchhHHHHHHHHHHHcC-CEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G-~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+++++||.|..+.-++..|+..+ ++|. .+.++.+++..+ ....+|++++|..++..++. ..++.+++..+ +
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--~~~~pdvvl~Dl~mP~~~G~---e~~~~l~~~~p--~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--RELKPDVVLLDLSMPGMDGL---EALKQLRARGP--D 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--hhcCCCEEEEcCCCCCCChH---HHHHHHHHHCC--C
Confidence 69999999999999999998887 6644 566699999874 34678999999888764433 34455553221 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.++++++....+........ .|...++.|......+..+++.+...
T Consensus 75 ~~vvvlt~~~~~~~v~~al~-~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRALR-AGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred CcEEEEeccCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 35555554444333333333 37889999999999999999988753
No 200
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=95.92 E-value=0.44 Score=54.50 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=70.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..++|+|||++..+..+...|+.. |+.+. .+.++.+++..+.. ..+|++++|..+...+. ...+++++....
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dg---le~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDG---LDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCCh---HHHHHHHHHhCC-
Confidence 368999999999999999999887 88877 88999999987754 45899999988765543 334555555432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~ 850 (959)
.|.+++.................|...++.||+.
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 3444433221111111111122367789999994
No 201
>PRK14084 two-component response regulator; Provisional
Probab=95.91 E-value=0.051 Score=58.36 Aligned_cols=115 Identities=14% Similarity=0.307 Sum_probs=79.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcC-C-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G-~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
++++++||++..+..+...|+..+ + .+..+.++.+++..+.. ..+|++++|..++..+ .......+++.. .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 479999999999999999999876 3 57788999999988765 4589999998876543 233455565532 1
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+.++.++. .... .... -..+...++.||+....+..++.++..
T Consensus 74 ~~~iI~~t~-~~~~-~~~~-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATA-HDQF-AVKA-FELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEec-ChHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 244444332 2211 1111 223567899999999999999888763
No 202
>PRK09483 response regulator; Provisional
Probab=95.82 E-value=0.058 Score=56.20 Aligned_cols=118 Identities=9% Similarity=0.110 Sum_probs=81.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+++++||++..+..++..|+.. |+.+. .+.+..+++..+.. ..+|++++|..+...++ ...+..+++..+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~-- 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGG---LEATRKILRYTP-- 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHHHCC--
Confidence 47999999999999999999885 88875 68899999888764 46899999987654432 334555554321
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++............ -..|...++.||.....+..++..+...
T Consensus 75 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKV-MQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2334444332222221122 2236778999999999999999887753
No 203
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=95.77 E-value=0.16 Score=46.70 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=78.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..+++++|+++.....++..|+..|+ .+..+.+..+++..+.. ..+|++++|...... ........+++.....
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~---~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNM---DGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCC---CHHHHHHHHHhCCCcC
Confidence 46899999999999999999999999 47788899998887643 457888888654332 2234455666543222
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
...++++............ ...|...++.||+....+...+++++
T Consensus 80 ~~~~i~~~~~~~~~~~~~~-~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHHHH-HHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 2233333322221111111 12256789999999998888877655
No 204
>PRK13435 response regulator; Provisional
Probab=95.69 E-value=0.15 Score=49.73 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=78.1
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..+++++|+++.....+...|...|+.+. .+++..++++.+.. ..+|++++|..+... ......+..+++..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~--~~~~~~~~~l~~~~--- 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADG--PTGVEVARRLSADG--- 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCC--CcHHHHHHHHHhCC---
Confidence 46899999999999999999999999987 68899999887643 468999998765321 11222344444321
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...++++...... . .. ...|...++.||+....+...+.++..
T Consensus 78 ~~pii~ls~~~~~--~-~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 78 GVEVVFMTGNPER--V-PH-DFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred CCCEEEEeCCHHH--H-HH-HhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2233333332211 1 11 123677899999999999998887763
No 205
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.67 E-value=0.061 Score=58.18 Aligned_cols=114 Identities=15% Similarity=0.251 Sum_probs=79.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++++|||+......+..+|.+.|..+..++...+|+..+.. ..+|++++|-.++...+. .++.+.+.... .-|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngi---efaeQvr~i~~-~v~ 74 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGI---EFAEQVRDIES-AVP 74 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHH---HHHHHHHHhhc-cCc
Confidence 379999999999999999999999999999999999998865 578999999887655433 24455554321 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++.+...-...+ -.+....++.||+.+..|..++.+..
T Consensus 75 iifIssh~eya~ds----f~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 75 IIFISSHAEYADDS----FGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred EEEEecchhhhhhh----cccchHhhccCCCCHHHHHHHHHHHh
Confidence 44443321111111 11122489999999999998887766
No 206
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=95.66 E-value=0.1 Score=51.30 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=77.3
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
..|+|||+......+..-+++-|+.|.++.+..++++.++... +...++|..+-. +.....+..++.... +..
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 5899999999999999999999999999999999999987754 444555554432 333445666666432 345
Q ss_pred EEEEecCCCc-ccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 002153 820 LFLLANSISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (959)
Q Consensus 820 ~~ll~~~~~~-~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (959)
+++++.-.+- ...+..+ .|...++.||-....+.+++.+.
T Consensus 84 ivvLTGy~sIATAV~AvK--lGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAVK--LGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHHH--hhhhhhcCCCCChHHHHHHHhhc
Confidence 5555432211 1111111 25568999999999888888654
No 207
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=95.62 E-value=0.06 Score=55.88 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=79.7
Q ss_pred EEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceE
Q 002153 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (959)
Q Consensus 741 vLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (959)
++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....+..++...+ ...+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~~--~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSGK--QTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccCC--CCcE
Confidence 4789999999999999999999999999999999987754 4589999998765433 2345556654321 2233
Q ss_pred EEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 821 ~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+++............ -..|...++.||+....+...+..++..
T Consensus 74 ivls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 74 LFLTARDSVADKVKG-LDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred EEEEcCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 333322222111111 2236778999999999998888877643
No 208
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.53 E-value=0.058 Score=63.88 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=82.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.++|+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..+|++++|..+...+ ....+..+++.. ...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~---g~~ll~~i~~~~-~~~ 77 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMD---GIKALKEMRSHE-TRT 77 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4579999999999999999999999999999999999998764 4589999998876543 233455555532 112
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
|.+++. .. .........-..|...++.||+....+...+...+.
T Consensus 78 pvI~lt-~~-~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVILMT-AY-AEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEEEEe-CC-CCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 444433 22 211111111223677899999999988888776654
No 209
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=95.46 E-value=0.12 Score=55.18 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=77.7
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCC-E-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~-~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
++++++||++..+..+...|+.+|. . +..+.++.+++..+.. ..+|++++|..++..++ ....+.++.. .
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G---~~~~~~l~~~---~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISG---LELVGMLDPE---H 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHhccc---C
Confidence 4799999999999999999999983 3 4567899999988764 46899999998765432 2233444321 1
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.|.+++++.. .. ..... -..+...++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~-~~~~a-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DE-YAIKA-FEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HH-HHHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3444444332 21 11111 123566899999999999999888764
No 210
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=95.45 E-value=0.099 Score=54.37 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=79.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++++++||++.....++..++..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++.... ..|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~-~~~ 74 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ-TLP 74 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-CCC
Confidence 368999999999999999999999999999999999877644 4689999987665432 2334555554321 123
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.++ ++........... -..|...++.||.....+...+..++.
T Consensus 75 ii~-lt~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLL-LTARSAVADRVKG-LNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEE-EECCCCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 333 3322222111111 223677899999999999888877664
No 211
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.40 E-value=0.011 Score=58.25 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCC--CcCcCCCccch--HHHHHHHHHHcCCEEEEEEeCCC-cEEEEEEEEe
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVF 710 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s--~s~~~~GtGLG--LsI~k~LVe~mgG~I~v~S~~g~-GttF~~~lp~ 710 (959)
.|.|.|+|.||+.+.+.++|......... .....|..|+| +|+. .++..+.+.|.... ..+++|....
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~ 107 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDW 107 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEec
Confidence 58999999999999999988765533221 12244567888 4433 36788999987543 3455555543
No 212
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=95.35 E-value=0.15 Score=53.84 Aligned_cols=116 Identities=13% Similarity=0.165 Sum_probs=80.7
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+.... ....+..++... ..|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~p 83 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRFS--DIP 83 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 389999999999999999999999999999999999988753 4589999998765443 233455555421 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.++ +............ -..|...++.||+....+...+...+.
T Consensus 84 ii~-l~~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 84 IVM-VTAKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred EEE-EEcCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 443 3332222111111 223677899999999998888777664
No 213
>PRK09191 two-component response regulator; Provisional
Probab=95.27 E-value=0.19 Score=54.27 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=78.7
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+++++||++..+..++..|+..|+.+. .+.++.++++.+.. ..+|++++|..++.. ......+..++... ..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~--~~g~e~l~~l~~~~--~~ 211 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADG--SSGIDAVNDILKTF--DV 211 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCC--CCHHHHHHHHHHhC--CC
Confidence 5799999999999999999999999987 68899999988755 468999999876531 11233455665543 22
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
|.+++.... .. . ......+...++.||+....+...+.++..
T Consensus 212 pii~ls~~~-~~-~--~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 212 PVIFITAFP-ER-L--LTGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CEEEEeCCC-cH-H--HHHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 444433221 11 1 111112344689999999999999887663
No 214
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.16 E-value=0.038 Score=67.79 Aligned_cols=105 Identities=29% Similarity=0.466 Sum_probs=66.0
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHHhccCCC---cEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCcccc
Q 002153 543 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617 (959)
Q Consensus 543 p~~v~g--D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 617 (959)
|.+.+| +...+..++.-||+||+.....| .|.|.+..
T Consensus 26 P~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (631)
T PRK05559 26 PGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA-------------------------------------- 67 (631)
T ss_pred CCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeC--------------------------------------
Confidence 344443 57789999999999999875444 44444420
Q ss_pred ccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhh--------ccCCccccCC---CCcCcCCC-ccchHHHHHHHH
Q 002153 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP---SISRTHGG-TGIGLSISKYLV 685 (959)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~~~---s~s~~~~G-tGLGLsI~k~LV 685 (959)
+ -.|+|.|+|.|||.+..+. +|......+. ...+..+| .|.|++.+..+.
T Consensus 68 ---------------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS 129 (631)
T PRK05559 68 ---------------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALS 129 (631)
T ss_pred ---------------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhhe
Confidence 0 0489999999999998888 8876432111 11112233 799999888875
Q ss_pred HHcCCEEEEEEeCCCcEEEEEEE
Q 002153 686 GRMKGEIGFVSIPNIGSTFTFTA 708 (959)
Q Consensus 686 e~mgG~I~v~S~~g~GttF~~~l 708 (959)
+. +.+++..+ |-.+..++
T Consensus 130 ~~----l~V~s~r~-g~~~~~~f 147 (631)
T PRK05559 130 SR----LEVEVKRD-GKVYRQRF 147 (631)
T ss_pred ee----EEEEEEeC-CeEEEEEE
Confidence 54 45555543 33344443
No 215
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.97 E-value=0.13 Score=60.82 Aligned_cols=116 Identities=11% Similarity=0.133 Sum_probs=77.6
Q ss_pred EEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccC--ccchHHHHHHHHhcCCCCCc
Q 002153 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 741 vLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 818 (959)
+|+|||++..+..+...+ .|+.|..+.++.+|++.+.. ..+|++++|..+.... .......+..++...+ ..|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~-~~p 75 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIAP-DTK 75 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCC-CCC
Confidence 589999999888888877 79999999999999999865 4689999998776421 1223345556655321 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++. ...+....... -..|...++.||+....+...+..++.
T Consensus 76 iI~lt-~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 76 VIVIT-GNDDRENAVKA-IGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEEe-cCCCHHHHHHH-HHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 44433 22221111112 123677899999999999888876654
No 216
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=94.92 E-value=0.13 Score=52.09 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=78.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+++++||++.....+...|...|+.+..+.++.+++..+.. ..+|++++|..+...+ ....+..++... ...|
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~-~~~~ 77 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG-SPLP 77 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC-CCCC
Confidence 579999999999999999999999999999999988877653 4589999997665433 233455555432 1124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+ +++........... ...|...++.||+....+...+..+..
T Consensus 78 ii-~l~~~~~~~~~~~~-~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 78 VI-VMTGHGDVPLAVEA-MKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred EE-EEECCCCHHHHHHH-HHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 33 33332221111111 122566789999999888888776664
No 217
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=94.88 E-value=0.15 Score=52.05 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=76.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.++++|||++..+..++..|+.. |+. +..++++.+++..+.. ..+|++++|..+...+. ...++.++.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~----- 71 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISG---LELLSQLPK----- 71 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHcc-----
Confidence 37999999999999899888754 665 5678999999988753 46899999977654332 223444432
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...++++............ ...|...++.||+....+...+..++.
T Consensus 72 ~~~vi~~s~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 GMATIMLSVHDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEECCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2233444332222211112 223677899999999999999988775
No 218
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=94.63 E-value=0.26 Score=50.77 Aligned_cols=118 Identities=12% Similarity=0.198 Sum_probs=78.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+++++||++..+..+...++.. ++.+. .+.++.+++..+.. ..+|++++|..+...+ ....+..++...+
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~-- 76 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQS-- 76 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhCC--
Confidence 57999999999999999999887 57775 67888888887653 4689999998765433 2334555554321
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...++++........... ....|...++.||+....+..++..++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 77 TVKVLFLSSKSECFYAGR-AIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CCcEEEEECCCcHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 223333333222111111 12236778999999999999998877653
No 219
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=93.71 E-value=0.49 Score=41.17 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=70.4
Q ss_pred EEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEE
Q 002153 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821 (959)
Q Consensus 742 Lvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (959)
+++|+++..+..+...++..|+.+..+.+..+++..+.. ..++++++|........ ......++.. ....+.++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~---~~~~~~l~~~-~~~~~~i~ 74 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDG---LELLRRIRKR-GPDIPIIF 74 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCch---HHHHHHHHHh-CCCCCEEE
Confidence 467888988888999999999999999999998887754 46888998876544322 2344455543 11123333
Q ss_pred EEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 002153 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (959)
Q Consensus 822 ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (959)
+............ ...+...++.||+....+...+..
T Consensus 75 -~~~~~~~~~~~~~-~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 -LTAHGDDEDAVEA-LKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred -EEecccHHHHHHH-HHcChhhHccCCCCHHHHHHHHHh
Confidence 3221111111111 112566788999999888777754
No 220
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.26 E-value=0.11 Score=63.65 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCChhh--------Hhhcc-CCcccc--CCCCcCcCCC-ccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IF-epF~q~--~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 66667 332211 1111122233 79999999888774
No 221
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=93.13 E-value=0.66 Score=47.21 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=77.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcC-CE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G-~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+++++||++..+..+...|...+ +. +..+.++.+++..... ..+|++++|..+...+ ....+..+++...
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~~- 76 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRWP- 76 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC-
Confidence 4689999999999999999998864 55 4578888888876543 4589999997664432 2334555555321
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||.....+...+.....
T Consensus 77 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 77 -AMNILVLTARQEEHMASRT-LAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred -CCcEEEEeCCCCHHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2334444332222211111 222667899999999999988887664
No 222
>PRK10651 transcriptional regulator NarL; Provisional
Probab=93.05 E-value=0.64 Score=47.87 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=78.1
Q ss_pred CceEEEeCCchhHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+++++||++..+..+...|... ++. +..+.+..+++..+.. ..+|++++|..+...+ ....+..+++...
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 358999999999999899888875 555 4568899999887754 4589999997765433 2334555554322
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...++++............. ..|...++.||+....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~~-~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 22334443322222211111 22667899999999999999988774
No 223
>PRK10403 transcriptional regulator NarP; Provisional
Probab=92.71 E-value=0.87 Score=46.76 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=77.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHH-cCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~-~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+++++||++.....++..|+. .|+.+. .+.+..+++..+.. ..+|++++|..+...+ ....+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---~~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMS---GLDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCc---HHHHHHHHHHhCC--
Confidence 5799999999988888888875 577775 68899999887644 4689999998765443 2334555554321
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...++++............ ...|...++.||+....+...+..+..
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 2233333322221111111 223677899999999999888887653
No 224
>PRK13558 bacterio-opsin activator; Provisional
Probab=92.61 E-value=0.32 Score=60.54 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=76.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..+...|...|+.|..+.++.+++..+.. ..+|++++|..++..+ ....+..++.... ..|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~~-~~p 81 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTTA-VPP 81 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcCC-CCC
Confidence 589999999999999999999999999999999999988754 5589999998876443 2345666665322 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChH--HHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~--~l~~~l~~~~ 862 (959)
.+++. ........... -..|...++.||.... .+...+...+
T Consensus 82 iI~lt-~~~~~~~~~~a-l~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 82 VVVVP-TAGDEAVARRA-VDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred EEEEE-CCCCHHHHHHH-HhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 44333 22222122112 2236678899987543 4445554444
No 225
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.60 E-value=0.2 Score=61.61 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=23.9
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHHhccCCC---cEEEEE
Q 002153 543 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 577 (959)
Q Consensus 543 p~~v~g--D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v 577 (959)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i 65 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTI 65 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEE
Confidence 444444 56779999999999999843344 555554
No 226
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=92.51 E-value=0.18 Score=62.40 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.2
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHHhccCCC---cEEEEE
Q 002153 543 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 577 (959)
Q Consensus 543 p~~v~g--D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v 577 (959)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 19 P~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 19 PGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 344444 56779999999999999833233 454444
No 227
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=92.36 E-value=0.45 Score=48.96 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEc-CHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS-DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~-~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+|+|++||.++++......|...|+++..+. ++..+.... ....+|++++|..++..+... .+...+..
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~--~~~~pDvVildie~p~rd~~e------~~~~~~~~ 75 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC--ERLQPDVVILDIEMPRRDIIE------ALLLASEN 75 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH--HhcCCCEEEEecCCCCccHHH------HHHHhhcC
Confidence 457899999999999999999999999876553 443333322 235789999998877665221 22222222
Q ss_pred CC-ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.. |.+.+++.+.+ .... .....|...++.||+..+.+...|.-+..
T Consensus 76 ~~~piv~lt~~s~p-~~i~-~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 76 VARPIVALTAYSDP-ALIE-AAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred CCCCEEEEEccCCh-HHHH-HHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 23 45555444332 2222 22233788999999999999888765553
No 228
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=92.35 E-value=0.62 Score=49.57 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=77.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..++++|||+|+.+.-++..|+ .++. +..+.++.++++.+. .+|++++|..+++.++. ......++...+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~--~~~~~~i~~~~p-- 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLI--HYWQDTLSRKNN-- 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHH--HHHHHHHHHhCC--
Confidence 4569999999999999999997 4454 446678888887643 38999999988754422 111233444321
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++..... ..........|...++.|+.....+..+++.+...
T Consensus 81 ~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 81 NIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 245555544322 11111112136778999999999999999888753
No 229
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=92.35 E-value=1.2 Score=46.95 Aligned_cols=117 Identities=5% Similarity=0.005 Sum_probs=74.5
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCC---EEEEEcCHHHHHHHHhcCCCcccEEEEecc--ccccCccchHHHHHHHHhcCC
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~---~v~~~~~~~~al~~l~~~~~~~~~ilid~~--~~~~~~~~~~~~~~~~~~~~~ 814 (959)
.++||||++..+.-++..|+..+. .+..++++.++++.+.. ..+|++++|.. +..++. ...++.+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g---~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASN---SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCCh---HHHHHHHHHHCC
Confidence 589999999999999999987663 44567899999987754 35799999954 433322 236667765432
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++......... ..........++.|+.....+..++..+...
T Consensus 77 --~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 77 --NTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred --CCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 2455555432221110 0000000012568999999999999888754
No 230
>PRK15029 arginine decarboxylase; Provisional
Probab=91.66 E-value=0.99 Score=56.46 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=62.1
Q ss_pred ceEEEeCCchh--------HHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCcc-chHHHHHHH
Q 002153 739 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 809 (959)
Q Consensus 739 ~rvLvvdd~~~--------~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~-~~~~~~~~~ 809 (959)
++||+|||+.. ..+.++..|+..|++|..+.++.+|+..+... ..+|++++|..++..+.. ....+++.+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 47999999985 58889999999999999999999999998542 468999999877655432 113467777
Q ss_pred HhcCCCCCceEEEEe
Q 002153 810 RKLGCGFQSKLFLLA 824 (959)
Q Consensus 810 ~~~~~~~~~~~~ll~ 824 (959)
|+... ..|.+++.+
T Consensus 80 R~~~~-~iPIIlLTa 93 (755)
T PRK15029 80 HERQQ-NVPVFLLGD 93 (755)
T ss_pred HhhCC-CCCEEEEEc
Confidence 76422 235555543
No 231
>PRK05218 heat shock protein 90; Provisional
Probab=91.36 E-value=0.6 Score=57.36 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC------------CCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~------------~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+.+++...|...-+.+ .+.....|-.|+|+.=| =..+-++.|.|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcCC
Confidence 489999999999999988764432211 01122346689998522 22356789998763
No 232
>PRK14083 HSP90 family protein; Provisional
Probab=90.05 E-value=0.26 Score=60.04 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC-------CCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~-------~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~ 698 (959)
.++|.|||+||+.++..+.|-..-... .......|..|+|.+=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888753221100 01112346778887644322 2345555544
No 233
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=89.95 E-value=2 Score=40.52 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=60.0
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
||||+||+..|+.-+...|+-+|.++..+++.+- ..... ....+.+.+-..... .....+..+.+.. ....
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~--~~~~~~~~v~~g~~~----~~~~~l~~l~~~~--~~~P 71 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW--SSPWEACAVILGSCS----KLAELLKELLKWA--PHIP 71 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh--hcCCcEEEEEecCch----hHHHHHHHHHhhC--CCCC
Confidence 6899999999999999999999999999987543 11111 123333333221111 1122333333321 1122
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (959)
++++.. ..... ....+-..+..|++...+.++|+++
T Consensus 72 vlllg~-~~~~~-----~~~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 72 VLLLGE-HDSPE-----ELPNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred EEEECC-CCccc-----cccCeeEecCCCCCHHHHHHHHHHh
Confidence 222222 11110 0011345688999999999988764
No 234
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.31 E-value=0.85 Score=51.61 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=51.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcC--CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCcc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS 800 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~ 800 (959)
.|||+|||.+..+.+++..|..-| ..|.++.|+.+|++.+.. ..+|++.+|..++.++..
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl 63 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGL 63 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHH
Confidence 589999999999999999999999 556788999999998755 456999999998876643
No 235
>PTZ00130 heat shock protein 90; Provisional
Probab=88.90 E-value=0.54 Score=58.51 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCChhhHhhccCC--------ccc---cCCCCcCcCCCccchHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYL 684 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep--------F~q---~~~s~s~~~~GtGLGLsI~k~L 684 (959)
.++|.|||+||+.+++..-+-. |.+ .......-.|-.|+|++-|--+
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 193 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 193 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeee
Confidence 5899999999999986543311 211 0011123456789998766433
No 236
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=86.77 E-value=3.9 Score=29.95 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=42.1
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEec
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 792 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~ 792 (959)
+++++++++.....+...++..|+.+..+.+..++...+.. ..++++++|.
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~ 52 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDI 52 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEec
Confidence 68999999999888889999999999999998888877643 3467777764
No 237
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.51 E-value=1.8 Score=42.17 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEEe
Q 002153 553 FRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (959)
Q Consensus 553 L~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (959)
+.-+...|+.||+||...|.|.|..++.
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~ 91 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLY 91 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEec
Confidence 4456778999999999999999988754
No 238
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=85.79 E-value=0.83 Score=55.98 Aligned_cols=48 Identities=35% Similarity=0.542 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCcccc---CCCCcC-cCCCccchHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISR-THGGTGIGLSISKYLV 685 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---~~s~s~-~~~GtGLGLsI~k~LV 685 (959)
.|+|.|+|.|||.+..+ -+|...... +....+ ..|-.|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976543 223222111 111111 2233799999887774
No 239
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=85.48 E-value=4.4 Score=42.80 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=67.1
Q ss_pred HHHHHHHHH---cCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCC
Q 002153 752 KVSRYHIQR---LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828 (959)
Q Consensus 752 ~v~~~~l~~---~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 828 (959)
.-++..|.. .|+.|..+.++.++++.+.. ..+|++++|......+.......++++++..+ ..++++++....
T Consensus 4 ~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~ 79 (207)
T PRK11475 4 IGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDI 79 (207)
T ss_pred HHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCC
Confidence 334555644 57778899999999987654 35689986543333233334456777776432 234444433221
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 829 ~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
+..........|...++.||.....+..+++.+...+
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 2111111112367789999999999999999988643
No 240
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=85.19 E-value=0.84 Score=56.53 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.1
Q ss_pred EEEEEEEcCCCCChhhHhhcc
Q 002153 637 LIVSVEDTGQGIPLEAQSRIF 657 (959)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IF 657 (959)
..+.|.|||+||+++++.+-+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 368999999999998866554
No 241
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=83.06 E-value=1.4 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~ 664 (959)
.|.|.|||+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999987643
No 242
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=79.05 E-value=1.5 Score=54.78 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.5
Q ss_pred CceEEecH---HHHHHHHHHHHHHHHhccCC---CcEEEEE
Q 002153 543 PETLIGDP---GRFRQIITNLMGNSIKFTEK---GHIFVTV 577 (959)
Q Consensus 543 p~~v~gD~---~rL~QIL~NLl~NAiKfT~~---G~I~v~v 577 (959)
|.+.+|+. .-|.+++.-||+|||.-.-. ..|.|++
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 55566654 45899999999999983323 3455544
No 243
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=77.44 E-value=2.1 Score=52.86 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCccc---cCCCCcCcCCC-ccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q---~~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||.+..+ -+|.-... .|.+..+..|| .|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 48999999999976433 12321110 01111222233 79999988777664
No 244
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=76.67 E-value=3.2 Score=50.18 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCCChhhHhhcc--------CCcccc---CCCCcCcCCCccchHHHHHH
Q 002153 637 LIVSVEDTGQGIPLEAQSRIF--------TPFMQV---GPSISRTHGGTGIGLSISKY 683 (959)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IF--------epF~q~---~~s~s~~~~GtGLGLsI~k~ 683 (959)
-+++|+|||+||..++...-. ..|.+. +...+.--|-.|+|++=|--
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm 131 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM 131 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee
Confidence 368999999999998664432 112211 11112234667888875543
No 245
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.08 E-value=1.8e+02 Score=31.47 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHHHHHhc
Q 002153 549 DPGRFRQIITNLMGNSIKF 567 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKf 567 (959)
...++...|.+..+..+++
T Consensus 191 ~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 191 QREQIRDTIRETLGPEIRL 209 (246)
T ss_pred HHHHHHHHHHHHHCCCeeE
Confidence 4455666666655444433
No 246
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=62.71 E-value=12 Score=35.26 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHH
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~e 921 (959)
||||||||..-++-+..+|+=.|+.+..+++.+-
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~ 34 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW 34 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH
Confidence 6999999999999999999999999998876554
No 247
>PLN03237 DNA topoisomerase 2; Provisional
Probab=61.61 E-value=12 Score=49.77 Aligned_cols=55 Identities=25% Similarity=0.523 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHHcCCEE
Q 002153 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGEI 692 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~mgG~I 692 (959)
.|+|.|+|.|||-+..+. ||.-.... +....+..|| .|.|.++|.-+-+.+--++
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev 178 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEE
Confidence 489999999999874431 33322211 1111222233 7999998887776654433
No 248
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=57.61 E-value=4.8 Score=49.38 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChhhHhh-----------ccCCcccc---CCCCcCcCCCccchHHHHHHHHHHcC
Q 002153 638 IVSVEDTGQGIPLEAQSR-----------IFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRMK 689 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~-----------IFepF~q~---~~s~s~~~~GtGLGLsI~k~LVe~mg 689 (959)
.|+|.|+|.|||-+..+. +|.-.... +.+-.-..|-.|.|.+.|.-|-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 389999999999875421 12111110 11111123448999999877766553
No 249
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=57.06 E-value=47 Score=36.01 Aligned_cols=111 Identities=16% Similarity=0.254 Sum_probs=66.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHH-cCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~-~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
++++++||++..++-++..+.. .++.+. .+.+..++++.+... .+|++++|-.+.... .......++.. ..
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~---G~ela~~i~~~--~~ 74 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDIN---GIELAARIRKG--DP 74 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccc---hHHHHHHhccc--CC
Confidence 4789999999988877777773 122222 466777888777766 889999998887322 22344445443 11
Q ss_pred CceEEEEecCCC-cccccccCCCCCCCccccCCCChHHHHHHHHH
Q 002153 817 QSKLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (959)
Q Consensus 817 ~~~~~ll~~~~~-~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (959)
.|.++.++.-.. ..... .....+++.||.....+...+..
T Consensus 75 ~~~Ivfvt~~~~~a~~af----ev~a~d~i~kp~~~~~l~~~l~~ 115 (244)
T COG3279 75 RPAIVFVTAHDEYAVAAF----EVEALDYLLKPISEERLAKTLER 115 (244)
T ss_pred CCeEEEEEehHHHHHHHH----hHHHHhhhcCcchHHHHHHHHHH
Confidence 233333322111 10000 11233789999999999888864
No 250
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=55.58 E-value=20 Score=37.22 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=41.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEc
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmD 938 (959)
++||+||.....---+..+|+..|+++.+..|....++.+. ..+||.|++-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-~~~pd~iviS 52 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-ALKPDAIVIS 52 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-hcCCCEEEEc
Confidence 47999999998888999999999999999998844344443 3568999885
No 251
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.60 E-value=56 Score=32.31 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=35.9
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEc----ChHHHHH
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATE 924 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~----~g~eal~ 924 (959)
+.|++|+|+.......+-+..+|.+.|+.|+.++ |-++++.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~ 70 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH 70 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh
Confidence 5689999999999999999999999999999998 5555444
No 252
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.11 E-value=66 Score=31.31 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002153 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILI 148 (959)
Q Consensus 89 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~ 148 (959)
.++++++|+++.+++..+......+++ .+...-++.-.-|.++=+...+|+-.-|-|+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~q~--~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll 59 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQKQA--KLEQELEQAKQELEQYKQEVNDHFAQTAELL 59 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888788877777766643322 2223333333333333333344443333343
No 253
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=49.66 E-value=23 Score=36.71 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE---EEEEcChHHHHHHh-CCCCCccEEEEcC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDI 939 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~---v~~a~~g~eal~~~-~~~~~~DlilmDi 939 (959)
+++..||-|+.....++.-+++.|.. .....|...++... .....||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 58999999999999999999988732 33455666777654 2346899999995
No 254
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=48.66 E-value=21 Score=42.74 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCChhhHhhccCCcccc
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQV 663 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (959)
.+.|+|+|.||-.++++-+.++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999753
No 255
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=46.30 E-value=65 Score=34.40 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=40.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE--EEEEc--ChHHHHHHhCCCCCccEEEEcCCC
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAA--VVCVE--RGKKATELLMPPHQFDACFMDIQM 941 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~--v~~a~--~g~eal~~~~~~~~~DlilmDi~M 941 (959)
+|.-+|-|+...+.++..+++.|.. +.+.. +..+.++.. ....||+||+|..=
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK 142 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADK 142 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCCh
Confidence 8999999999999999999999864 44444 444444442 24689999999864
No 256
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=45.69 E-value=38 Score=41.42 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.3
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccC------CCCcCcCCCccchHH
Q 002153 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 679 (959)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~------~s~s~~~~GtGLGLs 679 (959)
.+.+.|.|+|.|+..+++..+-+++++.+ ....+.+|=.|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 35689999999999999999988887642 223445554444443
No 257
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=44.57 E-value=1.4e+02 Score=26.19 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=47.2
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHH
Q 002153 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523 (959)
Q Consensus 444 iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~ 523 (959)
+.|-+||-|..|.+++.+-.....+++.++.+..+......+.. +.+.|--+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999998877666666666666655555444433 33332211 1 223578999998888765
Q ss_pred h
Q 002153 524 S 524 (959)
Q Consensus 524 ~ 524 (959)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 258
>PLN03128 DNA topoisomerase 2; Provisional
Probab=41.01 E-value=36 Score=44.85 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||-+..+ -||.-.... +....+..|| .|.|.++|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999986433 123222211 1111222234 68998877666544
No 259
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=40.70 E-value=23 Score=47.24 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHHc
Q 002153 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 688 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~m 688 (959)
.|+|.|+|.|||-+..+. ||.-.... +....+..|| .|.|.++|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 489999999999875432 33332221 1111222234 699999887776554
No 260
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.24 E-value=1.8e+02 Score=22.83 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002153 385 PLLAISTSIGILVIASLVGHIFQATVNRIAK 415 (959)
Q Consensus 385 ~~~~~~~~i~~l~i~~l~~~i~~~~~~r~~~ 415 (959)
++..+..++.++.+...+|..++..++.++.
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445555555555555443
No 261
>PRK10693 response regulator of RpoS; Provisional
Probab=39.05 E-value=59 Score=36.33 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=52.1
Q ss_pred EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCCcccccccCCCCCCCcccc
Q 002153 767 VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846 (959)
Q Consensus 767 ~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 846 (959)
.+.++.+|++.+.. ..+|++++|..++..+. ...++.++.... ..|.+++... ........ .-..|...++.
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~G---le~~~~ir~~~~-~ipiI~lt~~-~~~~~~~~-al~~Ga~dyl~ 73 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNG---IEFVEHLRNRGD-QTPVLVISAT-ENMADIAK-ALRLGVQDVLL 73 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhcCC-CCcEEEEECC-CCHHHHHH-HHHCCCcEEEE
Confidence 36778888888755 56899999988766443 334555655421 2244443322 22111112 22236778999
Q ss_pred CCCC-hHHHHHHHHHHh
Q 002153 847 KPLR-SSMLAASLQRAM 862 (959)
Q Consensus 847 KPl~-~~~l~~~l~~~~ 862 (959)
||+. ...+.+.+...+
T Consensus 74 KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 74 KPVKDLNRLREMVFACL 90 (303)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 9994 777777776554
No 262
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=38.92 E-value=87 Score=33.06 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=41.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEcChHHHHHHhCCC---CCccEEEEcCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQ 940 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~~~---~~~DlilmDi~ 940 (959)
-+|.-+|-|+...++++.++++.|+ .+. ...+..+.+..+... .+||+||+|..
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 4899999999999999999999886 343 346676777765322 36999999985
No 263
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.94 E-value=6.1e+02 Score=28.28 Aligned_cols=148 Identities=13% Similarity=0.179 Sum_probs=81.7
Q ss_pred CceEEEeCCchhH---HHHHHHHHHHcCCEEEEEc-----CHHHHHHHHh--cCCCcccEEEEeccccccCccchHHHHH
Q 002153 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVN 807 (959)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~l~~~G~~v~~~~-----~~~~al~~l~--~~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (959)
++-+++|.|+|.. ...-...++++|+.++... +.++.++.+. +....++-+++....+..-. ....+.
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~--~~~i~~ 111 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVS--EQKILE 111 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC--HHHHHh
Confidence 3567778877753 4556678899999998762 2344555554 23456677777665542211 111111
Q ss_pred HHHhcCC--CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccC
Q 002153 808 NLRKLGC--GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885 (959)
Q Consensus 808 ~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (959)
.+..... ...|. ....... + ..-..|.++......+... .-.+.
T Consensus 112 ~I~p~KDVDGl~~~-----------n~g~l~~--~--~~~~~PcTp~ai~~ll~~~-------------------~i~l~ 157 (286)
T PRK14175 112 AINPEKDVDGFHPI-----------NIGKLYI--D--EQTFVPCTPLGIMEILKHA-------------------DIDLE 157 (286)
T ss_pred ccCcccCcccCCcc-----------chHhHhc--C--CCCCCCCcHHHHHHHHHHc-------------------CCCCC
Confidence 1111100 00000 0000000 0 0012455555555544321 11367
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHH
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~e 921 (959)
|++++|+---...-+-+..+|...|++|+++++-..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~ 193 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK 193 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence 899999999998889999999999999998887543
No 264
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.78 E-value=4.8e+02 Score=26.65 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=70.6
Q ss_pred hHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHH
Q 002153 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (959)
Q Consensus 440 Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (959)
+.+.+.|||-+|..+|..-+++|.+..-+ .+-++.|..++.... ..|.|+|+--|.---.-..+|-.+.=+-.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45668999999999999999999887655 345566666666554 45678888655433222345554432222
Q ss_pred HHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc-EEEEE
Q 002153 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 577 (959)
Q Consensus 520 l~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v 577 (959)
.+.| +.+| -++....+ ..++ .+.+ .+.+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~---a~ek-pe~~W~g~----r~~~-~Kn~-vkllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFF---ANEK-PELTWNGP----RAIL-PKNR-VKLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHH---hccC-CcccccCC----hhhc-Ccch-HHHHHHHHHHHcccCCCCCeeEEEe
Confidence 2222 2223 34433322 2221 2333 3467888877777777765 44443
No 265
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.50 E-value=1e+02 Score=25.85 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=29.9
Q ss_pred hHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 002153 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486 (959)
Q Consensus 440 Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~ 486 (959)
.+...-||+.+-|..|.|++++= ..++..+|++.+....+...
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999998752 22345677777766655553
No 266
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.65 E-value=2.6e+02 Score=27.19 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002153 387 LAISTSIGILVIASLVGHIFQAT 409 (959)
Q Consensus 387 ~~~~~~i~~l~i~~l~~~i~~~~ 409 (959)
..|...+..+++.+++|+++.+.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554443
No 267
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.85 E-value=2.5e+02 Score=27.35 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH----H-HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002153 93 LLFWTLVSLWIFWYMSSQATEKR----R-EALGSMCDERARMLQDQFNVSMNHVQAMS 145 (959)
Q Consensus 93 ~~~~~~~s~~~~~~~~~~~~~~~----~-~~~~~~~~~~a~~lq~~~~~~~~~~~~l~ 145 (959)
+++|+++.+.|..........+. + +.....-|+.-+-|-+.|+.+-..+-.|+
T Consensus 15 LvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~ 72 (138)
T COG3105 15 LVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLA 72 (138)
T ss_pred HHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766665554444322 1 44455566666667777777666666655
No 268
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.79 E-value=7e+02 Score=27.98 Aligned_cols=144 Identities=18% Similarity=0.159 Sum_probs=80.2
Q ss_pred CceEEEeCCchh---HHHHHHHHHHHcCCEEEEE-----cCHHHHHHHHh--cCCCcccEEEEeccccccCccchHHHHH
Q 002153 738 GMKALVVDPRPI---RAKVSRYHIQRLGIQVEVV-----SDQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVN 807 (959)
Q Consensus 738 g~rvLvvdd~~~---~~~v~~~~l~~~G~~v~~~-----~~~~~al~~l~--~~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (959)
++-++.|.|++. ....-...++++|+.++.. .+.++.++.+. +....++-+++...++..-. ....+.
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~--~~~i~~ 111 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLD--SEAVIQ 111 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCC--HHHHHh
Confidence 355777877775 4556677899999999876 24445555554 33456777777765542211 001111
Q ss_pred HHHhcCC--CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccC
Q 002153 808 NLRKLGC--GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885 (959)
Q Consensus 808 ~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (959)
.+..... ...|. ....... + .....|.++..+...|... + -.+.
T Consensus 112 ~I~p~KDVDGl~~~-----------n~g~l~~--~--~~~~~PcTp~ai~~ll~~~-~------------------i~~~ 157 (296)
T PRK14188 112 AIDPEKDVDGLHVV-----------NAGRLAT--G--ETALVPCTPLGCMMLLRRV-H------------------GDLS 157 (296)
T ss_pred ccCcccccccCChh-----------hHHHHhC--C--CCCCcCCCHHHHHHHHHHh-C------------------CCCC
Confidence 1111000 00000 0000000 0 0012355555544444321 0 1356
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEc
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~ 917 (959)
|++|.|+-.....-.-+...|.+.|+.|+.++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 89999999999999999999999999999996
No 269
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.89 E-value=7.1e+02 Score=27.81 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=43.7
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCC
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~m 944 (959)
+.|++++|+-.....-+-+..+|...|+.|+.+++-..-+.... .+.|+|+.-+--|.+
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~--~~ADIvv~AvG~p~~ 220 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYT--LDADILVVATGVKHL 220 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHH--hhCCEEEEccCCccc
Confidence 57899999999999999999999999999998886544333321 245666665555543
No 270
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=33.86 E-value=1.6e+02 Score=28.34 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=67.8
Q ss_pred CcccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCcc-chHHHHHHHHh
Q 002153 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNLRK 811 (959)
Q Consensus 733 ~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~-~~~~~~~~~~~ 811 (959)
...+.|+|...||+|..-+..+...|..-|.+|..-.+.. .+ ....+|++++-......+.. ....++.+--.
T Consensus 6 ~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l--p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~ 79 (140)
T COG4999 6 TACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL--PPAHYDMMLLGVAVTFRENLTMQHERLAKALS 79 (140)
T ss_pred hhhhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc--ChhhhceeeecccccccCCchHHHHHHHHHHh
Confidence 3457899999999999999999999999999987654321 11 12457888876544322211 11112211111
Q ss_pred cCCCCCceEEEEecCCC-cccccccCCCCCCCccccCCCChHHHHHHH
Q 002153 812 LGCGFQSKLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (959)
Q Consensus 812 ~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l 858 (959)
. .-.++++-+.. ...++..+. .|....+.||+++.++...+
T Consensus 80 m-----td~vilalPs~~qv~AeqLkQ-~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 80 M-----TDFVILALPSHAQVNAEQLKQ-DGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred h-----hcceEEecCcHHHHhHHHHhh-cchHhHhhCcchhhhhHHHH
Confidence 1 12233443332 223333333 36678999999998887744
No 271
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=33.72 E-value=8.1 Score=48.86 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=13.8
Q ss_pred EEEEEEcCCCCChhhHh
Q 002153 638 IVSVEDTGQGIPLEAQS 654 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~ 654 (959)
.|+|+|+|.|||-+..+
T Consensus 162 sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 162 SVEISDNGRGIPCDVSE 178 (903)
T ss_pred eEEEEeCCccccccccc
Confidence 38999999999986543
No 272
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=33.66 E-value=10 Score=45.90 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=29.5
Q ss_pred EEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCcCC-CccchHHHHHHHHHH
Q 002153 639 VSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHG-GTGIGLSISKYLVGR 687 (959)
Q Consensus 639 i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~~~-GtGLGLsI~k~LVe~ 687 (959)
|+|.|+|-|||-+..++ ||...... +.......| =.|.|.+.|..|-+.
T Consensus 70 isV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~ 130 (635)
T COG0187 70 ISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTW 130 (635)
T ss_pred EEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccce
Confidence 89999999999987544 34332211 111111123 368899888776654
No 273
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=33.29 E-value=1.4e+02 Score=31.20 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=39.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CEE-EEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG--AAV-VCVERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g--~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
.+++.||-|.....++..-++..| -++ ....|...++..+....+||+|++|---.
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 479999999999999998887776 223 33444456766664433599999997544
No 274
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.17 E-value=1.2e+02 Score=27.69 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=36.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE------cChHHHHHHhCCCCCccEEEEcCC
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQ 940 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a------~~g~eal~~~~~~~~~DlilmDi~ 940 (959)
+||||-..+.+...++..+++.|++.... ......++... ...|+|++=..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~ 57 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTD 57 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeC
Confidence 48999998888888999999999999888 22222244332 35799876443
No 275
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.96 E-value=1.4e+02 Score=29.34 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=44.5
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEcC---hHHHHHHhCCCCCccEEEEcCCCCC
Q 002153 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPE 943 (959)
Q Consensus 886 ~~~ILiv----dDn~~~~~~l~~~L~~~g~~v~~a~~---g~eal~~~~~~~~~DlilmDi~MP~ 943 (959)
+++||+. |....-..++..+|+..||+|+.... .++.++.+. +.++|+|.+-+.|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGH 66 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCcccc
Confidence 4578887 77778888899999999999998654 455566664 578999999888764
No 276
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.23 E-value=6.1e+02 Score=26.23 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcE
Q 002153 454 GVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533 (959)
Q Consensus 454 ~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~ 533 (959)
+|..-+|+|.+...++ .++-++.|..|++.....+ .|.|+--|.--- ...++..++-.-+-..+ ....++
T Consensus 3 AI~NGLELL~~~~~~~-~~~~~~LI~~Sa~~A~aRl----~F~RlAFGaag~-~~~i~~~e~~~~~~~~~----~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPE-MRPAMELIRESARNASARL----RFFRLAFGAAGS-GQQIDLGEARSVLRGYF----AGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCcc-chHHHHHHHHHHHHHHHHH----HHHHHHcCCCCC-CCCCCHHHHHHHHHHHH----hCCceE
Confidence 5666789887765422 3337788888877766554 566665444322 34566655433333322 333455
Q ss_pred EEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccchhhhhhccccCcCCCCCcccccccc
Q 002153 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSW 612 (959)
Q Consensus 534 l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~ 612 (959)
+...++.. . =|...-+++.|++-=|....+.| .|.|.+...
T Consensus 73 l~W~~~~~----~--~~k~~vklllnl~l~a~~alprGG~i~V~~~~~-------------------------------- 114 (182)
T PF10090_consen 73 LDWQVERD----L--LPKPEVKLLLNLLLCAEDALPRGGEITVSIEGS-------------------------------- 114 (182)
T ss_pred EEccCccc----c--CCHHHHHHHHHHHHHHHhhcCCCCEEEEEEecc--------------------------------
Confidence 55444332 1 13344589999999999998875 454443210
Q ss_pred CccccccCCCCCCCCCCCccCceeEEEEEEEcCCC--CChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCC
Q 002153 613 KGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690 (959)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG 690 (959)
.+. ..+.|.=+|.- ++++...-+-..-. .........=-+....+++..|+
T Consensus 115 -------------------~~~--~~~~v~a~G~~~~~~~~~~~~L~g~~~------~~~l~~~~VQ~~~~~~la~~~G~ 167 (182)
T PF10090_consen 115 -------------------EGD--GGWRVRAEGPRARLDPDLWAALAGEDP------EEDLDPRNVQFYLLPLLAREAGR 167 (182)
T ss_pred -------------------CCC--ceEEEEEeccccCCCHHHHHHhcCCCC------CCCCCHHhHHHHHHHHHHHHcCC
Confidence 011 13455555554 55555544422110 11122334446888999999999
Q ss_pred EEEEEEe
Q 002153 691 EIGFVSI 697 (959)
Q Consensus 691 ~I~v~S~ 697 (959)
+|.++..
T Consensus 168 ~l~~~~~ 174 (182)
T PF10090_consen 168 RLSVEAT 174 (182)
T ss_pred eEEEEec
Confidence 9999865
No 277
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.21 E-value=63 Score=33.77 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
|||||.....-..+...|++.|+++.+..+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE
Confidence 899999998888899999999999999988754444442 246887775
No 278
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.63 E-value=7.9e+02 Score=27.36 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=43.6
Q ss_pred ccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 002153 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943 (959)
Q Consensus 883 ~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~ 943 (959)
.+.|++++||-.-...-+=+..+|.+.|+.|+.+++-..-+.... .+.|+|+.-+--|+
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~--~~ADIvV~AvGkp~ 212 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHT--KKADIVIVGVGKPN 212 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHH--hhCCEEEEecCccc
Confidence 367899999999999999999999989999998876654444321 23566666555444
No 279
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.28 E-value=6.7e+02 Score=26.41 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 002153 386 LLAISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAA 433 (959)
Q Consensus 386 ~~~~~~~i~~l~i~~l~~~i~~~~~~-----r~~~l~~~~~~l~e~~~~ae~a 433 (959)
|..+..++.++++.+++.++++..+. |...++.......+.+++++..
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554433 3344444444444444444433
No 280
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=29.86 E-value=2.6e+02 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCCccEEEEc--CCCCCCCHHHHHHHh
Q 002153 920 KKATELLMPPHQFDACFMD--IQMPEMDGYLFCFFA 953 (959)
Q Consensus 920 ~eal~~~~~~~~~DlilmD--i~MP~mdG~e~~~~~ 953 (959)
.+..+++. .+.+|+|+-- -..+..|||.+-|.|
T Consensus 57 ~~i~~~i~-~~~id~vIn~~~~~~~~~~~~~iRR~A 91 (110)
T cd01424 57 PNIVDLIK-NGEIQLVINTPSGKRAIRDGFSIRRAA 91 (110)
T ss_pred hhHHHHHH-cCCeEEEEECCCCCccCccHHHHHHHH
Confidence 44555554 5689999873 223345899888876
No 281
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.55 E-value=69 Score=33.12 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
||+||....--.-+...|++.|+++.++.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999998888899999999999999997742233332 235776654
No 282
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=28.68 E-value=1e+03 Score=28.37 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhh
Q 002153 392 SIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 449 (959)
Q Consensus 392 ~i~~l~i~~l~~~i~~~~~~-----r~~~l~~~~~~l~e~~~~ae~a~~aks~Fla~iSHEIR 449 (959)
++.++++.+++.++++..+. |..++.....+..+.+++++++...-.+-++....|-+
T Consensus 8 lInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~ 70 (445)
T PRK13428 8 LIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAA 70 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333 33444444444444444444433332333444433333
No 283
>PRK13566 anthranilate synthase; Provisional
Probab=28.46 E-value=1.6e+02 Score=37.13 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=40.8
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
..|++|||||-...+...+..+|++.|++|.++...... +.+. ...||.|++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 457899999999888899999999999999998877532 3332 246898665
No 284
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.15 E-value=8.8e+02 Score=27.07 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=89.3
Q ss_pred CceEEEeCCchhH---HHHHHHHHHHcCCEEEEEc-----CHHHHHHHHhc--CCCcccEEEEeccccccCccchHHHHH
Q 002153 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVSTLFVN 807 (959)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~l~~~G~~v~~~~-----~~~~al~~l~~--~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (959)
++-++.|.|+|.. ...-.+.+++.|+.++... +.++.++.+.. .....+-+++...++..- .....+.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~--~~~~i~~ 112 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHI--DNVKVLE 112 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC--CHHHHHh
Confidence 4567778877753 4556678899999987762 33444554433 335566777766554221 1111111
Q ss_pred HHHhcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 002153 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (959)
Q Consensus 808 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (959)
.+...... ...++........ + ..-.-|.++......|... .-.+.|+
T Consensus 113 ~I~p~KDV---------DGl~~~n~g~l~~--~--~~~~~PcTp~av~~ll~~~-------------------~i~l~Gk 160 (285)
T PRK10792 113 RIHPDKDV---------DGFHPYNVGRLAQ--R--IPLLRPCTPRGIMTLLERY-------------------GIDTYGL 160 (285)
T ss_pred ccCccccc---------CccChhhHhHHhC--C--CCCCCCCCHHHHHHHHHHc-------------------CCCCCCC
Confidence 11110000 0000000000000 0 0001355555544444321 1135689
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
+++|+-.....-+-+..+|...|+.|+.+++-..-++... .+.|+|+.-+--|
T Consensus 161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~--~~ADIvi~avG~p 213 (285)
T PRK10792 161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHV--RNADLLVVAVGKP 213 (285)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hhCCEEEEcCCCc
Confidence 9999999999999999999999999999877654444321 2356655544333
No 285
>PRK11677 hypothetical protein; Provisional
Probab=27.92 E-value=6e+02 Score=25.06 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 002153 475 VRTAQASGKAL 485 (959)
Q Consensus 475 l~~i~~s~~~L 485 (959)
.+.+..++..|
T Consensus 74 y~HlA~~s~~L 84 (134)
T PRK11677 74 YQHMAKSSSEL 84 (134)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 286
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=27.65 E-value=1.7e+02 Score=30.89 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=43.4
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC--EEEE-EcCHHHHHHHHhcCC--CcccEEEEecc
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEV-VSDQLQCLSQIASGS--KIINMILVEQE 793 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~-~~~~~~al~~l~~~~--~~~~~ilid~~ 793 (959)
+.++.-+|-++.+.++.+..+++.|. .+++ ..+..+.+..+.+.. ..||+|++|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 45788899999999999999999986 3444 467777777765543 58999999974
No 287
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=27.62 E-value=1.2e+02 Score=29.11 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=46.0
Q ss_pred ccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCC
Q 002153 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945 (959)
Q Consensus 883 ~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~md 945 (959)
.+.||+++.||-|..........|.+.|.+|+.-.. +..+ ..+.||++|+.+-.+-..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~l-p~~hYD~~Ll~vavtfr~ 65 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSAL-PPAHYDMMLLGVAVTFRE 65 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccc----cccc-ChhhhceeeecccccccC
Confidence 367899999999999999999999999999876433 3334 357899999988776443
No 288
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=27.12 E-value=1.2e+03 Score=28.18 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002153 93 LLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIS 149 (959)
Q Consensus 93 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~ 149 (959)
+++.+++++.+++.......+..++...+..+..+..+...++...+.+..++....
T Consensus 30 ~i~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (570)
T PRK15426 30 FIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDAQLQYNVDKLIFLRNGMR 86 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555666666666777777777777777777666655543
No 289
>PRK05637 anthranilate synthase component II; Provisional
Probab=27.02 E-value=1.2e+02 Score=32.02 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=37.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
++||++|-..-+-.-+...|++.|+.+.++.+....-+.. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~--~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEIL--AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHH--hcCCCEEEE
Confidence 4799999988888889999999999999998864332222 246787776
No 290
>PRK10742 putative methyltransferase; Provisional
Probab=26.99 E-value=2.3e+02 Score=30.90 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=42.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCC
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD 945 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~------g~----~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~md 945 (959)
.|-+|..||-++....+++..|++. +. ++. ...|..+.+... ...||+|++|-+.|...
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCc
Confidence 3667999999999999999999984 21 232 234555555553 23699999999998643
No 291
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.93 E-value=6.6e+02 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 002153 389 ISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAA 433 (959)
Q Consensus 389 ~~~~i~~l~i~~l~~~i~~~~~~-----r~~~l~~~~~~l~e~~~~ae~a 433 (959)
+..++.++++.+++.++++..+. |...+........+.++++++.
T Consensus 12 ~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 61 (164)
T PRK14471 12 FWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNL 61 (164)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554443 3334444444444444444433
No 292
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=26.52 E-value=3.4e+02 Score=29.82 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=49.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 002153 86 RKVLITW-LLFWTLVSLWIFWYMSSQATEKRR--EALGSMCDERARMLQDQFNVSMNH-VQAMSILIS 149 (959)
Q Consensus 86 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~lq~~~~~~~~~-~~~l~~l~~ 149 (959)
|+++.-- +.+-++..+.+.+..+.|...+|. +.+.+...+++..++.|++.++|- ++.+.++.+
T Consensus 11 r~~~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~ 78 (297)
T COG3452 11 RRLLKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGK 78 (297)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3444433 555566666667888888885554 889999999999999999999886 999999965
No 293
>PLN02335 anthranilate synthase
Probab=25.48 E-value=1.1e+02 Score=32.74 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
.++|||||-....-..+...|.+.|+++.++.+....++.+. ...||.|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEE
Confidence 458999985455556688899999999999886531233232 235776654
No 294
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.44 E-value=5.3e+02 Score=23.69 Aligned_cols=18 Identities=6% Similarity=0.327 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHhhcch
Q 002153 429 KAEAADVAKSQFLATVSH 446 (959)
Q Consensus 429 ~ae~a~~aks~Fla~iSH 446 (959)
+..+..+.|..|+.+|-.
T Consensus 62 r~rES~~Er~K~~~s~~~ 79 (121)
T PF10669_consen 62 RNRESKRERQKFIWSMNK 79 (121)
T ss_pred HhhhhHHHHHhHHhhhhH
Confidence 334445566777776643
No 295
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=25.39 E-value=67 Score=39.40 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=35.1
Q ss_pred ccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcch-hhhccCCCEEEEEeCCHHHHHHHHHHHhhC
Q 002153 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS-LRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909 (959)
Q Consensus 845 l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ILivdDn~~~~~~l~~~L~~~ 909 (959)
-..|+..+.+..+.+++...-+..+.-.-..+... .-...++|+.++..++......++.-|...
T Consensus 251 n~Rpv~~~~i~~~inevy~~~~~~q~l~i~V~~~~iDvNvtPDK~~vll~~e~~vl~~l~~~l~~~ 316 (672)
T KOG1978|consen 251 NRRPVFPSDICRVINEVYKLYNERQYLFLDVPEGCIDVNVTPDKRQVLLSNERSVLFSLRNSLVDF 316 (672)
T ss_pred cCccCCHHHHHHHHHHHhhhhccccceeeeccccceeeeeCCCcceeeccchHHHHHHHHHHHHHH
Confidence 35788888888888777744333222111111100 011234677777777777666666665543
No 296
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=25.36 E-value=89 Score=32.32 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~Dlilm 937 (959)
||+||.....-.-+...|++.|+++.++.+.+..++.+. ...||.|++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVI 49 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEE
Confidence 899999998888899999999999999888753333332 245787765
No 297
>PRK11677 hypothetical protein; Provisional
Probab=25.03 E-value=4.5e+02 Score=25.87 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002153 92 WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (959)
Q Consensus 92 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~ 150 (959)
.+++|+++.+++..+..... +.+..+...-++-...|.++=....+|+.--|.|+..
T Consensus 9 ~livG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~ 65 (134)
T PRK11677 9 GLVVGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDT 65 (134)
T ss_pred HHHHHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556555555555444332 2223334444555555555555555555555555543
No 298
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.74 E-value=6.8e+02 Score=28.53 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 002153 414 AKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489 (959)
Q Consensus 414 ~~l~~~~~~l~e----~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lI 489 (959)
.+++++++++++ -+++.++.....++-.+.++|+.+. |..+...+.-+... .+.+..+.++.++...++....+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhH
Confidence 445555555544 3456777777788889999999885 45555555554433 34455666777777666666666
Q ss_pred HHHH
Q 002153 490 NEVL 493 (959)
Q Consensus 490 ndlL 493 (959)
.|+=
T Consensus 85 ~DmE 88 (330)
T PF07851_consen 85 FDME 88 (330)
T ss_pred HHHH
Confidence 5554
No 299
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.33 E-value=1.8e+02 Score=28.69 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=36.3
Q ss_pred ccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEc----CHHHHH
Q 002153 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS----DQLQCL 775 (959)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~----~~~~al 775 (959)
.+.|+++.|+.......+-+..+|.+.|+.|..+. +.++++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v 69 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV 69 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH
Confidence 57899999999999999999999999999999998 555544
No 300
>PRK00811 spermidine synthase; Provisional
Probab=24.30 E-value=2e+02 Score=31.92 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=39.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC------CEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 943 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g------~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~ 943 (959)
.+|.+||=++...+.++..+...+ -++ ....|+.+-+.. ....||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 489999999999999999886432 123 245666665544 2457999999987664
No 301
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=23.88 E-value=1.5e+02 Score=30.15 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=38.7
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~ 943 (959)
+.||+++||-.....-+-+..+|.+.|+.|+.+..-.+-++... ..-|+|+.-+--|.
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~--~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT--RRADIVVSAVGKPN 91 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH--TTSSEEEE-SSSTT
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee--eeccEEeeeecccc
Confidence 57899999999999999999999999999999876643333221 23566666554443
No 302
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.49 E-value=3.8e+02 Score=22.40 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 002153 123 CDERARMLQDQFN 135 (959)
Q Consensus 123 ~~~~a~~lq~~~~ 135 (959)
...+.+.++++.+
T Consensus 53 ~~k~l~~le~e~~ 65 (68)
T PF06305_consen 53 LRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 303
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.14 E-value=2.6e+02 Score=28.54 Aligned_cols=40 Identities=30% Similarity=0.304 Sum_probs=30.8
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHH
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 923 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal 923 (959)
+.+++|||+---+.....+...|.+.|+.+..++.-.+-+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l 81 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL 81 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH
Confidence 5678999999988777778888888898887766554433
No 304
>PLN02823 spermine synthase
Probab=23.05 E-value=2.1e+02 Score=32.73 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-----GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 943 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-----g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~ 943 (959)
.+|.+||=|+...++++..+... +-++. ...||.+-++.. ...||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 47999999999999999888532 12222 456777777543 357999999986554
No 305
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=23.04 E-value=1.6e+02 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCC
Q 002153 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940 (959)
Q Consensus 900 ~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~ 940 (959)
..+...|++.|++|+.+.+.++|+..+......+.|++|+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d 47 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD 47 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc
Confidence 44677888899999999999999999965566788998876
No 306
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.01 E-value=7e+02 Score=24.18 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002153 472 QDYVRTAQASGKALV 486 (959)
Q Consensus 472 ~~~l~~i~~s~~~L~ 486 (959)
++..+.+..+++.|.
T Consensus 67 ~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 67 QKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555555543
No 307
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.97 E-value=1.4e+02 Score=32.33 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=42.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-------CCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCH
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-------GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-------g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG 946 (959)
++|-+||=++...++.+.++... ..++ ...||..-++...+ ..||+|++|+.-|...+
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQE-EKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSSS-T-EEEEEEESSSTTSCG
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhccC-CcccEEEEeCCCCCCCc
Confidence 48999999999999999887643 1234 66788888776542 27999999998876544
No 308
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.74 E-value=1.1e+03 Score=26.30 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=91.0
Q ss_pred CceEEEeCCchhH---HHHHHHHHHHcCCEEEEEc-----CHHHHHHHHh--cCCCcccEEEEeccccccCccchHHHHH
Q 002153 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVN 807 (959)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~l~~~G~~v~~~~-----~~~~al~~l~--~~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (959)
++-++.|.|+|.. ...-...++++|+.++... +.++.++.+. +....++-+++....+..-. ....+.
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~--~~~i~~ 109 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVD--ERAVLD 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC--HHHHHh
Confidence 4567888887754 4455678899999998864 4444555554 33456677777665542111 011111
Q ss_pred HHHhcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 002153 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (959)
Q Consensus 808 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (959)
.+...... ...++........ +-.. -..|.++......|... .-.+.|+
T Consensus 110 ~I~p~KDV---------DGl~~~n~g~l~~--g~~~-~~~PcTp~avi~ll~~~-------------------~i~l~Gk 158 (282)
T PRK14182 110 AISPAKDA---------DGFHPFNVGALSI--GIAG-VPRPCTPAGVMRMLDEA-------------------RVDPKGK 158 (282)
T ss_pred ccCcccCc---------CCCCHhHHHHHhC--CCCC-CCCCCCHHHHHHHHHHh-------------------CCCCCCC
Confidence 11110000 0000000000000 0000 01355554444444221 0135789
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
++.||-.....-+=+..+|.+.|+.|+.+++...-++... .+.|+++.-+--|
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~--~~ADIvI~AvGk~ 211 (282)
T PRK14182 159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEV--GRADILVAAIGKA 211 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH--hhCCEEEEecCCc
Confidence 9999999999999999999999999999987665444332 2346665554443
No 309
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.67 E-value=8.2e+02 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 002153 392 SIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAE 431 (959)
Q Consensus 392 ~i~~l~i~~l~~~i~~~~~~-----r~~~l~~~~~~l~e~~~~ae 431 (959)
++.++++.+++.++++..+. |...+........+.+++++
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~ 69 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQ 69 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444433 33344444444444333333
No 310
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=22.13 E-value=2.4e+02 Score=29.21 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=39.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEcChHHHHHHhCC-CCCccEEEEcCCCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQMP 942 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~~~~-~~~~DlilmDi~MP 942 (959)
.++..||.++...+.++.-++..|+. +. ...|..+++..+.. ...+|+|++|--..
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCC
Confidence 37999999999999999888888763 22 33444455543321 23489999997654
No 311
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=22.03 E-value=7.3e+02 Score=25.65 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=47.8
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCE--EEEEcCHHHHHHHHhcCCCcccEEEEeccc
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEV 794 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~ 794 (959)
+.-.++.++.+++..++..+..+++||-. |..+.+.++++..+..+...+-++..+...
T Consensus 29 fGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~ 89 (176)
T PRK03958 29 LGADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENI 89 (176)
T ss_pred cCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCc
Confidence 44568899999999999999999999966 889999999999987555666666665544
No 312
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=21.84 E-value=2.1e+02 Score=36.15 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=40.4
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCC
Q 002153 888 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940 (959)
Q Consensus 888 ~ILivdDn~-~~-----~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~ 940 (959)
+++||+++- .+ .+.+...|++.||+|..+.+..+++.........+.|+.|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWD 60 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecc
Confidence 467776663 22 455677889999999999999999998865556778888853
No 313
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.63 E-value=8.2e+02 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002153 387 LAISTSIGILVIASLVGHIFQATVN 411 (959)
Q Consensus 387 ~~~~~~i~~l~i~~l~~~i~~~~~~ 411 (959)
+.+..++.++++.+++.++++..+.
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~ 34 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVL 34 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555565555443
No 314
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.43 E-value=7e+02 Score=23.59 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhH
Q 002153 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450 (959)
Q Consensus 413 ~~~l~~~~~~l~e~~~~ae~a~~aks~Fla~iSHEIRT 450 (959)
...+........+.+.+++.....-..-+...-+|...
T Consensus 32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~ 69 (132)
T PF00430_consen 32 KAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQE 69 (132)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544444444444444333333334444444443
No 315
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.39 E-value=2.3e+02 Score=31.58 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=42.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CE----EEEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG--AA----VVCVERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g--~~----v~~a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
.+|.+||=|+...++.+..|.... .. -....||.+-++... +.||+||+|+.=|
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~--~~fDvIi~D~tdp 160 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE--EKFDVIIVDSTDP 160 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC--CcCCEEEEcCCCC
Confidence 389999999999999999987553 32 345678877777653 4799999999988
No 316
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.81 E-value=8.9e+02 Score=24.57 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002153 412 RIAKVEEDYHGMMELKK 428 (959)
Q Consensus 412 r~~~l~~~~~~l~e~~~ 428 (959)
|...+........+.++
T Consensus 50 R~~~I~~~l~~Ae~~~~ 66 (175)
T PRK14472 50 REKGIQSSIDRAHSAKD 66 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444443333333
No 317
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.76 E-value=1e+03 Score=25.13 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002153 412 RIAKVEEDYHGMMELKKKAEAA 433 (959)
Q Consensus 412 r~~~l~~~~~~l~e~~~~ae~a 433 (959)
|...+...+.+-.+.+.+++..
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~ 106 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAA 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444444444433
No 318
>PRK00536 speE spermidine synthase; Provisional
Probab=20.54 E-value=2.6e+02 Score=30.74 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=34.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-----CCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHH
Q 002153 888 KILIVDDNNVNLKVAAAGLKRY-----GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFF 952 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~-----g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~ 952 (959)
+|-+||=|+..-+..+..|-.. .-++.... ...+. ....||+||+|.. |..+-|+.|+-
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~~~--~~~~fDVIIvDs~-~~~~fy~~~~~ 159 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLDL--DIKKYDLIICLQE-PDIHKIDGLKR 159 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhhhc--cCCcCCEEEEcCC-CChHHHHHHHH
Confidence 7888888877777666654432 12333332 11111 1257999999964 55666666654
No 319
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=20.46 E-value=3e+02 Score=27.87 Aligned_cols=127 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred cCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC------------------------CCcEEEEEEEEeCC
Q 002153 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP------------------------NIGSTFTFTAVFGN 712 (959)
Q Consensus 657 FepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~------------------------g~GttF~~~lp~~~ 712 (959)
+-||+-.+. ...-.|+.--|++.+.+.+|-++.+...+ ..--.|.|+-|+..
T Consensus 9 ~~P~~~~~~----~~~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~ 84 (225)
T PF00497_consen 9 YPPFSYIDE----DGEPSGIDVDLLRAIAKRLGIKIEFVPMPWSRLLEMLENGKADIIIGGLSITPERAKKFDFSDPYYS 84 (225)
T ss_dssp BTTTBEEET----TSEEESHHHHHHHHHHHHHTCEEEEEEEEGGGHHHHHHTTSSSEEESSEB-BHHHHTTEEEESESEE
T ss_pred CCCeEEECC----CCCEEEEhHHHHHHHHhhcccccceeecccccccccccccccccccccccccccccccccccccccc
Q ss_pred CCCCCCccccccccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEe
Q 002153 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 791 (959)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid 791 (959)
....-............-.....+.|.++.++.+......+....-+ ++++..+.+..+++..+..+ .+|.++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~g~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~g--~~d~~i~~ 159 (225)
T PF00497_consen 85 SPYVLVVRKGDAPPIKTIKSLDDLKGKRIGVVRGSSYADYLKQQYPS--NINIVEVDSPEEALEALLSG--RIDAFIVD 159 (225)
T ss_dssp EEEEEEEETTSTCSTSSHSSGGGGTTSEEEEETTSHHHHHHHHHTHH--TSEEEEESSHHHHHHHHHTT--SSSEEEEE
T ss_pred hhheeeeccccccccccccchhhhcCcccccccchhHHHHhhhhccc--hhhhcccccHHHHHHHHhcC--Ceeeeecc
No 320
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.33 E-value=8.3e+02 Score=24.00 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002153 390 STSIGILVIASLVGHIFQATV 410 (959)
Q Consensus 390 ~~~i~~l~i~~l~~~i~~~~~ 410 (959)
..++.++++.+++.++++..+
T Consensus 12 ~qli~Flil~~~l~kfl~kPi 32 (141)
T PRK08476 12 ATFVVFLLLIVILNSWLYKPL 32 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555444
No 321
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.11 E-value=1.9e+02 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHHhhCCCEEEEEcCh-----HHHHHHhCCC-CCccEEEE--cCCC---CCCCHHHHHHHh
Q 002153 903 AAGLKRYGAAVVCVERG-----KKATELLMPP-HQFDACFM--DIQM---PEMDGYLFCFFA 953 (959)
Q Consensus 903 ~~~L~~~g~~v~~a~~g-----~eal~~~~~~-~~~Dlilm--Di~M---P~mdG~e~~~~~ 953 (959)
..+|++.|..+..+..+ .++.+++. . ..+|+|+- |-.. +..||+.+-|.|
T Consensus 35 a~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A 95 (112)
T cd00532 35 SRVLADAGIPVRAVSKRHEDGEPTVDAAIA-EKGKFDVVINLRDPRRDRCTDEDGTALLRLA 95 (112)
T ss_pred HHHHHHcCCceEEEEecCCCCCcHHHHHHh-CCCCEEEEEEcCCCCcccccCCChHHHHHHH
Confidence 45567788888776543 34777774 6 78999887 4333 577899988876
Done!