Query 002153
Match_columns 959
No_of_seqs 692 out of 6008
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4l_A Histidine kinase 4; PAS 100.0 5.5E-48 1.9E-52 419.1 27.5 268 107-382 1-270 (270)
2 2c2a_A Sensor histidine kinase 100.0 6.6E-38 2.3E-42 337.8 31.0 231 429-712 12-249 (258)
3 4ew8_A Sensor protein DIVL; si 100.0 3.9E-33 1.4E-37 301.5 31.2 230 424-713 27-258 (268)
4 1gkz_A [3-methyl-2-oxobutanoat 100.0 7.3E-33 2.5E-37 317.4 24.8 227 432-713 116-375 (388)
5 3jz3_A Sensor protein QSEC; he 100.0 6.9E-34 2.4E-38 297.8 13.1 215 437-712 2-218 (222)
6 2btz_A Pyruvate dehydrogenase 100.0 1.1E-32 3.9E-37 316.4 24.3 219 439-712 97-351 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 3.1E-32 1E-36 312.8 26.0 219 438-712 96-351 (394)
8 2q8g_A [pyruvate dehydrogenase 100.0 7E-32 2.4E-36 311.2 26.4 219 438-712 107-364 (407)
9 3d36_A Sporulation kinase B; G 100.0 6.9E-31 2.4E-35 279.1 25.0 214 435-713 12-227 (244)
10 1y8o_A [pyruvate dehydrogenase 100.0 3.2E-31 1.1E-35 306.7 24.1 220 437-712 118-375 (419)
11 3a0r_A Sensor protein; four he 100.0 1.5E-30 5.2E-35 291.4 24.5 214 435-712 130-346 (349)
12 4fpp_A Phosphotransferase; fou 100.0 9.6E-30 3.3E-34 273.5 22.4 195 440-709 49-246 (247)
13 1b3q_A Protein (chemotaxis pro 99.9 3.9E-27 1.3E-31 268.9 16.0 249 435-759 8-308 (379)
14 1id0_A PHOQ histidine kinase; 99.9 3.5E-23 1.2E-27 203.9 18.9 145 508-712 2-146 (152)
15 3ehh_A Sensor kinase (YOCF pro 99.9 4.1E-23 1.4E-27 216.0 20.0 189 435-711 26-216 (218)
16 1ysr_A Sensor-type histidine k 99.9 3.6E-23 1.2E-27 203.8 17.7 146 506-711 4-149 (150)
17 3sl2_A Sensor histidine kinase 99.9 9.2E-23 3.1E-27 206.9 18.0 153 509-714 2-155 (177)
18 3a0y_A Sensor protein; ATP-LID 99.9 3.8E-22 1.3E-26 196.1 19.7 146 506-712 2-149 (152)
19 1bxd_A ENVZ(290-450), protein 99.9 1.7E-22 5.9E-27 201.4 17.2 149 504-713 4-152 (161)
20 1r62_A Nitrogen regulation pro 99.9 2.9E-22 9.9E-27 198.5 17.3 156 504-711 2-159 (160)
21 1i58_A Chemotaxis protein CHEA 99.9 9.5E-22 3.3E-26 201.5 13.4 149 508-710 3-188 (189)
22 3ehg_A Sensor kinase (YOCF pro 99.8 1.1E-18 3.6E-23 167.6 13.1 125 510-711 2-126 (128)
23 3zxo_A Redox sensor histidine 99.8 2.6E-18 8.9E-23 164.4 14.8 125 508-711 3-128 (129)
24 3zxq_A Hypoxia sensor histidin 99.7 3.8E-17 1.3E-21 155.3 15.1 122 511-711 2-123 (124)
25 2zbk_B Type 2 DNA topoisomeras 99.6 3.1E-16 1.1E-20 184.2 11.5 117 546-712 24-148 (530)
26 1mu5_A Type II DNA topoisomera 99.6 5.7E-16 1.9E-20 180.0 12.8 117 546-712 26-149 (471)
27 1th8_A Anti-sigma F factor; SP 99.6 1E-15 3.6E-20 149.8 11.7 103 548-713 35-141 (145)
28 3luf_A Two-component system re 99.6 1.8E-15 6.3E-20 163.2 13.9 186 739-953 5-191 (259)
29 2ayx_A Sensor kinase protein R 99.6 5.7E-14 1.9E-18 151.0 19.8 188 734-953 7-195 (254)
30 3mm4_A Histidine kinase homolo 99.5 1E-13 3.6E-18 144.0 11.0 167 684-864 15-196 (206)
31 2q2e_B Type 2 DNA topoisomeras 99.4 7.9E-13 2.7E-17 157.3 10.2 115 546-712 31-155 (621)
32 1w25_A Stalked-cell differenti 99.3 2.1E-11 7.2E-16 142.0 20.6 206 739-953 2-216 (459)
33 3to5_A CHEY homolog; alpha(5)b 99.3 9.2E-13 3.1E-17 127.6 7.4 67 886-953 12-79 (134)
34 2lpm_A Two-component response 99.3 5.7E-13 2E-17 127.1 3.0 67 886-953 8-75 (123)
35 3n0r_A Response regulator; sig 99.0 1.9E-10 6.6E-15 125.8 6.6 67 886-953 160-228 (286)
36 3gl9_A Response regulator; bet 99.0 8.1E-10 2.8E-14 103.9 10.0 66 887-953 3-68 (122)
37 3to5_A CHEY homolog; alpha(5)b 99.0 2.1E-09 7.2E-14 103.9 11.5 119 737-862 11-131 (134)
38 3f6p_A Transcriptional regulat 98.9 2E-09 6.8E-14 100.8 8.9 66 887-953 3-68 (120)
39 3t6k_A Response regulator rece 98.9 3E-09 1E-13 102.0 9.0 67 886-953 4-70 (136)
40 2r25_B Osmosensing histidine p 98.9 3.5E-09 1.2E-13 101.1 8.1 67 887-953 3-74 (133)
41 3m6m_D Sensory/regulatory prot 98.9 3.6E-09 1.2E-13 102.4 8.3 68 885-953 13-80 (143)
42 3rqi_A Response regulator prot 98.9 3E-09 1E-13 107.8 7.8 68 885-953 6-73 (184)
43 3mm4_A Histidine kinase homolo 98.8 6.2E-09 2.1E-13 107.8 8.8 70 884-953 59-141 (206)
44 3h1g_A Chemotaxis protein CHEY 98.8 7.8E-09 2.7E-13 97.9 8.0 68 886-953 5-73 (129)
45 3gt7_A Sensor protein; structu 98.8 2.3E-08 8E-13 97.8 10.4 67 886-953 7-73 (154)
46 1mb3_A Cell division response 98.7 1.8E-08 6E-13 94.1 7.8 66 887-953 2-67 (124)
47 3eod_A Protein HNR; response r 98.7 3E-08 1E-12 93.6 9.4 68 885-953 6-73 (130)
48 1dcf_A ETR1 protein; beta-alph 98.7 2.9E-08 1E-12 94.6 9.4 67 885-953 6-72 (136)
49 3i42_A Response regulator rece 98.7 1.7E-08 5.9E-13 94.8 7.6 66 887-953 4-69 (127)
50 3grc_A Sensor protein, kinase; 98.7 2.6E-08 8.8E-13 95.3 9.0 67 886-953 6-72 (140)
51 3h5i_A Response regulator/sens 98.7 3.5E-08 1.2E-12 94.7 9.8 68 886-953 5-73 (140)
52 1dbw_A Transcriptional regulat 98.7 4.1E-08 1.4E-12 92.2 10.0 67 886-953 3-69 (126)
53 1srr_A SPO0F, sporulation resp 98.7 2.4E-08 8.2E-13 93.4 8.3 66 887-953 4-69 (124)
54 3c3m_A Response regulator rece 98.7 3E-08 1E-12 95.0 8.8 66 887-953 4-69 (138)
55 3a10_A Response regulator; pho 98.7 3.5E-08 1.2E-12 91.1 8.8 66 887-953 2-67 (116)
56 3hv2_A Response regulator/HD d 98.7 3.5E-08 1.2E-12 96.3 9.1 68 885-953 13-80 (153)
57 3crn_A Response regulator rece 98.7 3.1E-08 1.1E-12 94.1 8.4 66 887-953 4-69 (132)
58 1xhf_A DYE resistance, aerobic 98.7 4.6E-08 1.6E-12 91.3 9.0 66 887-953 4-69 (123)
59 3kyj_B CHEY6 protein, putative 98.7 2.2E-08 7.7E-13 96.6 7.1 68 885-953 12-82 (145)
60 3lte_A Response regulator; str 98.7 3.9E-08 1.3E-12 92.9 8.6 67 886-953 6-72 (132)
61 2pl1_A Transcriptional regulat 98.7 4.7E-08 1.6E-12 90.7 8.7 65 888-953 2-66 (121)
62 2a9o_A Response regulator; ess 98.7 4E-08 1.4E-12 91.0 8.1 66 887-953 2-67 (120)
63 3c97_A Signal transduction his 98.7 4.5E-08 1.5E-12 93.9 8.7 66 887-953 11-76 (140)
64 1yio_A Response regulatory pro 98.7 5.8E-08 2E-12 99.8 10.1 67 886-953 4-70 (208)
65 1zgz_A Torcad operon transcrip 98.7 5.5E-08 1.9E-12 90.6 8.9 66 887-953 3-68 (122)
66 3r0j_A Possible two component 98.7 3.6E-08 1.2E-12 104.9 8.6 67 886-953 23-89 (250)
67 1i3c_A Response regulator RCP1 98.6 7.1E-08 2.4E-12 93.7 9.8 67 887-953 9-83 (149)
68 3dzd_A Transcriptional regulat 98.6 1.4E-08 4.7E-13 115.0 5.3 66 887-953 1-66 (368)
69 1jbe_A Chemotaxis protein CHEY 98.6 7.6E-08 2.6E-12 90.4 9.5 66 887-953 5-71 (128)
70 1tmy_A CHEY protein, TMY; chem 98.6 3.8E-08 1.3E-12 91.3 7.3 66 887-953 3-69 (120)
71 3lua_A Response regulator rece 98.6 4.2E-08 1.4E-12 94.0 7.6 67 886-953 4-73 (140)
72 3ilh_A Two component response 98.6 5.2E-08 1.8E-12 93.5 8.2 67 886-953 9-82 (146)
73 3heb_A Response regulator rece 98.6 5E-08 1.7E-12 94.9 8.2 68 886-953 4-81 (152)
74 2b4a_A BH3024; flavodoxin-like 98.6 7.7E-08 2.6E-12 91.9 9.3 68 885-953 14-82 (138)
75 1k68_A Phytochrome response re 98.6 1.1E-07 3.6E-12 90.3 10.2 68 886-953 2-77 (140)
76 1p6q_A CHEY2; chemotaxis, sign 98.6 4.8E-08 1.7E-12 91.9 7.6 66 887-953 7-73 (129)
77 3hdv_A Response regulator; PSI 98.6 5.8E-08 2E-12 92.3 8.2 68 886-953 7-74 (136)
78 3eq2_A Probable two-component 98.6 3E-08 1E-12 113.0 7.2 66 887-953 6-71 (394)
79 2qzj_A Two-component response 98.6 4E-08 1.4E-12 94.0 7.0 66 887-953 5-70 (136)
80 1mvo_A PHOP response regulator 98.6 6.8E-08 2.3E-12 91.7 8.2 67 886-953 3-69 (136)
81 3kto_A Response regulator rece 98.6 4.4E-08 1.5E-12 93.5 6.5 67 886-953 6-74 (136)
82 2rjn_A Response regulator rece 98.6 1.5E-07 5.2E-12 91.7 10.4 68 885-953 6-73 (154)
83 2jba_A Phosphate regulon trans 98.6 6.4E-08 2.2E-12 90.7 7.2 66 887-953 3-68 (127)
84 1s8n_A Putative antiterminator 98.6 7.5E-08 2.6E-12 98.9 8.3 67 886-953 13-80 (205)
85 3nhm_A Response regulator; pro 98.6 9.8E-08 3.4E-12 90.2 8.5 66 886-953 4-69 (133)
86 3cfy_A Putative LUXO repressor 98.6 5.1E-08 1.8E-12 93.4 6.5 66 887-953 5-70 (137)
87 4dad_A Putative pilus assembly 98.6 3.3E-08 1.1E-12 95.4 5.0 69 885-953 19-89 (146)
88 3kht_A Response regulator; PSI 98.6 1.1E-07 3.6E-12 91.6 8.4 67 886-953 5-73 (144)
89 3cg4_A Response regulator rece 98.6 1.7E-07 5.8E-12 89.6 9.8 67 886-953 7-73 (142)
90 3kcn_A Adenylate cyclase homol 98.6 1.2E-07 4.1E-12 92.2 8.8 67 886-953 4-70 (151)
91 3sy8_A ROCR; TIM barrel phosph 98.6 5.4E-08 1.8E-12 111.4 7.1 67 887-953 4-71 (400)
92 2lpm_A Two-component response 98.6 7.9E-08 2.7E-12 91.4 7.0 112 737-861 7-119 (123)
93 3jte_A Response regulator rece 98.5 1.9E-07 6.7E-12 89.5 9.7 67 887-953 4-71 (143)
94 3hzh_A Chemotaxis response reg 98.5 9.7E-08 3.3E-12 93.7 7.6 67 886-953 36-105 (157)
95 1dz3_A Stage 0 sporulation pro 98.5 1E-07 3.4E-12 90.1 7.4 66 887-953 3-70 (130)
96 2rdm_A Response regulator rece 98.5 2.4E-07 8.4E-12 87.2 10.0 67 886-953 5-73 (132)
97 3snk_A Response regulator CHEY 98.5 2.5E-08 8.5E-13 95.0 3.0 67 886-953 14-81 (135)
98 3f6c_A Positive transcription 98.5 9.4E-08 3.2E-12 90.5 6.4 65 888-953 3-68 (134)
99 1k66_A Phytochrome response re 98.5 1.8E-07 6.2E-12 89.9 8.5 68 886-953 6-84 (149)
100 3hdg_A Uncharacterized protein 98.5 1.3E-07 4.4E-12 90.1 7.4 67 886-953 7-73 (137)
101 1zh2_A KDP operon transcriptio 98.5 9.8E-08 3.3E-12 88.4 6.1 66 888-954 3-68 (121)
102 4e7p_A Response regulator; DNA 98.5 2.7E-07 9.2E-12 89.6 9.5 67 886-953 20-88 (150)
103 1qkk_A DCTD, C4-dicarboxylate 98.5 3.2E-07 1.1E-11 89.5 10.0 67 886-953 3-69 (155)
104 2jk1_A HUPR, hydrogenase trans 98.5 1.5E-07 5.2E-12 90.0 7.4 65 887-953 2-66 (139)
105 3hzh_A Chemotaxis response reg 98.5 4.6E-07 1.6E-11 88.8 11.0 120 737-862 35-155 (157)
106 3b2n_A Uncharacterized protein 98.5 1.4E-07 4.6E-12 89.7 6.9 66 887-953 4-71 (133)
107 1w25_A Stalked-cell differenti 98.5 1.2E-07 4.1E-12 110.2 7.6 66 887-953 2-67 (459)
108 3q9s_A DNA-binding response re 98.5 1.1E-07 3.9E-12 101.3 6.8 67 886-953 37-103 (249)
109 2qxy_A Response regulator; reg 98.5 2.8E-07 9.5E-12 88.3 8.6 66 886-953 4-69 (142)
110 2j48_A Two-component sensor ki 98.5 2.8E-07 9.5E-12 84.4 8.3 66 887-953 2-67 (119)
111 1kgs_A DRRD, DNA binding respo 98.5 2.5E-07 8.7E-12 96.1 8.9 66 887-953 3-68 (225)
112 3cnb_A DNA-binding response re 98.5 2.6E-07 9E-12 88.2 8.2 67 886-953 8-76 (143)
113 3gl9_A Response regulator; bet 98.5 1.4E-06 4.7E-11 81.5 12.7 118 739-862 3-120 (122)
114 1ys7_A Transcriptional regulat 98.5 3E-07 1E-11 96.2 8.9 66 887-953 8-73 (233)
115 3cu5_A Two component transcrip 98.5 3.4E-07 1.2E-11 88.1 8.5 66 887-953 3-71 (141)
116 2zay_A Response regulator rece 98.4 1.4E-07 4.9E-12 90.9 5.8 67 886-953 8-74 (147)
117 2qvg_A Two component response 98.4 3.3E-07 1.1E-11 87.7 8.3 68 886-953 7-81 (143)
118 3eqz_A Response regulator; str 98.4 2.5E-07 8.6E-12 87.4 7.1 66 886-953 3-68 (135)
119 3eul_A Possible nitrate/nitrit 98.4 2.5E-07 8.5E-12 89.9 7.2 68 885-953 14-83 (152)
120 3n53_A Response regulator rece 98.4 2E-07 7E-12 89.1 6.4 66 886-953 3-68 (140)
121 1a04_A Nitrate/nitrite respons 98.4 2.5E-07 8.4E-12 95.7 7.2 66 887-953 6-73 (215)
122 1ny5_A Transcriptional regulat 98.4 2.4E-07 8.2E-12 105.6 7.5 65 888-953 2-66 (387)
123 3r0j_A Possible two component 98.4 1.4E-06 4.7E-11 92.5 13.0 140 701-863 1-140 (250)
124 2gkg_A Response regulator homo 98.4 2.7E-07 9.4E-12 85.9 6.5 66 887-953 6-72 (127)
125 2gwr_A DNA-binding response re 98.4 3.3E-07 1.1E-11 96.6 7.8 66 887-953 6-71 (238)
126 2oqr_A Sensory transduction pr 98.4 3.7E-07 1.3E-11 95.3 8.1 66 887-953 5-70 (230)
127 3cg0_A Response regulator rece 98.4 4.2E-07 1.5E-11 86.5 7.5 67 886-953 9-77 (140)
128 2qr3_A Two-component system re 98.4 6.4E-07 2.2E-11 85.2 8.5 66 887-953 4-74 (140)
129 1dcf_A ETR1 protein; beta-alph 98.4 2.7E-06 9.4E-11 80.7 12.8 121 736-863 5-128 (136)
130 3cz5_A Two-component response 98.4 6.7E-07 2.3E-11 86.9 8.6 67 886-953 5-73 (153)
131 3n0r_A Response regulator; sig 98.4 3.3E-06 1.1E-10 92.1 14.9 116 738-864 160-277 (286)
132 2qv0_A Protein MRKE; structura 98.4 7.3E-07 2.5E-11 85.4 8.3 67 886-953 9-77 (143)
133 3bre_A Probable two-component 98.3 2.2E-07 7.5E-12 104.0 4.5 66 887-953 19-85 (358)
134 1kij_A DNA gyrase subunit B; t 98.3 2.3E-07 8E-12 105.3 4.7 86 547-689 31-128 (390)
135 3h1g_A Chemotaxis protein CHEY 98.3 2.9E-06 1E-10 79.9 11.5 123 737-864 4-127 (129)
136 3t8y_A CHEB, chemotaxis respon 98.3 7.9E-07 2.7E-11 88.0 7.6 66 887-953 26-93 (164)
137 3m6m_D Sensory/regulatory prot 98.3 2.8E-06 9.7E-11 81.8 11.3 122 736-863 12-135 (143)
138 3t6k_A Response regulator rece 98.3 4E-06 1.4E-10 79.9 11.8 121 738-864 4-124 (136)
139 3grc_A Sensor protein, kinase; 98.3 4.3E-06 1.5E-10 79.6 12.0 122 738-864 6-127 (140)
140 1b63_A MUTL; DNA mismatch repa 98.3 1.6E-06 5.4E-11 96.6 10.1 89 552-700 24-118 (333)
141 3i42_A Response regulator rece 98.3 5.4E-06 1.8E-10 77.5 12.3 119 738-863 3-121 (127)
142 3c3w_A Two component transcrip 98.3 5.1E-07 1.7E-11 94.4 5.5 65 888-953 3-69 (225)
143 1dc7_A NTRC, nitrogen regulati 98.3 1.9E-07 6.6E-12 86.7 1.7 66 887-953 4-69 (124)
144 3lua_A Response regulator rece 98.3 2.9E-06 9.8E-11 81.0 9.9 123 738-865 4-128 (140)
145 3klo_A Transcriptional regulat 98.2 4.2E-07 1.4E-11 94.9 3.9 67 887-953 8-76 (225)
146 3gt7_A Sensor protein; structu 98.2 6.5E-06 2.2E-10 80.2 12.1 122 737-864 6-127 (154)
147 3h5i_A Response regulator/sens 98.2 1.5E-05 5.2E-10 76.0 14.6 120 737-863 4-123 (140)
148 1h7s_A PMS1 protein homolog 2; 98.2 2.6E-06 9.1E-11 95.8 10.5 89 552-700 34-128 (365)
149 2qsj_A DNA-binding response re 98.2 1.7E-06 5.7E-11 84.1 7.6 67 887-953 4-72 (154)
150 2r25_B Osmosensing histidine p 98.2 6.9E-06 2.4E-10 77.9 11.8 120 739-863 3-126 (133)
151 3cg4_A Response regulator rece 98.2 1.7E-05 5.8E-10 75.5 14.6 121 737-863 6-126 (142)
152 3ilh_A Two component response 98.2 5.4E-06 1.8E-10 79.2 11.1 125 737-865 8-140 (146)
153 3na3_A DNA mismatch repair pro 98.2 3.6E-06 1.2E-10 93.6 11.2 89 552-700 28-122 (348)
154 1p2f_A Response regulator; DRR 98.2 1.6E-06 5.4E-11 89.9 7.7 62 888-953 4-65 (220)
155 3heb_A Response regulator rece 98.2 8.3E-06 2.8E-10 79.0 12.4 122 738-863 4-134 (152)
156 1k68_A Phytochrome response re 98.2 7E-06 2.4E-10 77.6 11.6 122 738-863 2-130 (140)
157 3f6p_A Transcriptional regulat 98.2 9.1E-06 3.1E-10 75.5 11.9 116 739-863 3-118 (120)
158 3lte_A Response regulator; str 98.2 1E-05 3.5E-10 76.0 12.4 120 738-864 6-125 (132)
159 2pln_A HP1043, response regula 98.2 2.7E-06 9.2E-11 80.8 8.3 65 884-953 16-80 (137)
160 1a2o_A CHEB methylesterase; ba 98.2 1.5E-06 5.1E-11 97.5 7.4 66 887-953 4-71 (349)
161 3nhm_A Response regulator; pro 98.2 2.2E-05 7.4E-10 73.9 14.4 119 738-864 4-122 (133)
162 3eod_A Protein HNR; response r 98.2 8.8E-06 3E-10 76.4 11.3 120 736-863 5-125 (130)
163 1qo0_D AMIR; binding protein, 98.2 9.2E-07 3.1E-11 90.0 4.4 64 884-953 10-73 (196)
164 3hdv_A Response regulator; PSI 98.2 1.4E-05 4.8E-10 75.6 12.3 122 738-865 7-128 (136)
165 2gkg_A Response regulator homo 98.1 2.3E-05 7.9E-10 72.6 13.4 118 739-863 6-124 (127)
166 1jbe_A Chemotaxis protein CHEY 98.1 1.5E-05 5.1E-10 74.5 11.8 119 738-862 4-123 (128)
167 3jte_A Response regulator rece 98.1 1.3E-05 4.5E-10 76.5 11.4 119 739-863 4-122 (143)
168 1mb3_A Cell division response 98.1 2E-05 6.8E-10 73.0 12.3 119 739-863 2-120 (124)
169 3zcc_A HAMP, osmolarity sensor 98.1 9.9E-06 3.4E-10 74.0 10.0 64 427-495 50-113 (114)
170 3c3m_A Response regulator rece 98.1 3.1E-05 1.1E-09 73.6 13.8 120 739-864 4-123 (138)
171 2ayx_A Sensor kinase protein R 98.1 1.3E-05 4.4E-10 85.5 12.2 121 735-863 126-246 (254)
172 2vyc_A Biodegradative arginine 98.1 2.8E-06 9.7E-11 104.8 7.8 66 888-953 2-79 (755)
173 3cnb_A DNA-binding response re 98.1 2.2E-05 7.5E-10 74.6 12.4 123 737-865 7-131 (143)
174 1k66_A Phytochrome response re 98.1 1.5E-05 5.2E-10 76.2 11.4 123 737-863 5-137 (149)
175 2qvg_A Two component response 98.1 2.2E-05 7.6E-10 74.8 12.5 124 738-865 7-136 (143)
176 3rqi_A Response regulator prot 98.1 5.8E-06 2E-10 83.4 8.5 118 737-862 6-123 (184)
177 3c97_A Signal transduction his 98.1 3.8E-05 1.3E-09 73.1 13.3 118 738-864 10-130 (140)
178 3kht_A Response regulator; PSI 98.1 2.4E-05 8.3E-10 74.8 12.0 122 737-864 4-128 (144)
179 3ke6_A Protein RV1364C/MT1410; 98.1 3.6E-06 1.2E-10 96.2 7.1 90 549-712 294-387 (399)
180 3luf_A Two-component system re 98.1 2.5E-05 8.7E-10 83.6 13.3 122 737-863 123-244 (259)
181 2zay_A Response regulator rece 98.0 1.8E-05 6.1E-10 75.9 10.5 122 737-864 7-128 (147)
182 1i3c_A Response regulator RCP1 98.0 3.4E-05 1.2E-09 74.5 12.5 122 738-863 8-136 (149)
183 3hv2_A Response regulator/HD d 98.0 2.4E-05 8.4E-10 75.8 11.4 119 737-863 13-132 (153)
184 2jba_A Phosphate regulon trans 98.0 2.9E-05 9.8E-10 72.3 11.4 119 739-863 3-121 (127)
185 3n53_A Response regulator rece 98.0 4.7E-05 1.6E-09 72.4 13.1 119 738-863 3-121 (140)
186 2rjn_A Response regulator rece 98.0 2.5E-05 8.6E-10 75.7 11.3 121 736-863 5-125 (154)
187 3snk_A Response regulator CHEY 98.0 7.1E-06 2.4E-10 77.8 7.1 118 738-863 14-132 (135)
188 4dad_A Putative pilus assembly 98.0 9.3E-06 3.2E-10 78.0 8.0 124 735-864 17-141 (146)
189 1p6q_A CHEY2; chemotaxis, sign 98.0 1.6E-05 5.4E-10 74.4 9.4 120 738-863 6-126 (129)
190 3a10_A Response regulator; pho 98.0 5.2E-05 1.8E-09 69.4 12.7 114 739-862 2-115 (116)
191 3kto_A Response regulator rece 98.0 8.9E-06 3.1E-10 77.3 7.6 121 738-864 6-126 (136)
192 2pl1_A Transcriptional regulat 98.0 4.7E-05 1.6E-09 70.1 12.2 116 739-862 1-116 (121)
193 1tmy_A CHEY protein, TMY; chem 98.0 2.8E-05 9.4E-10 71.7 10.4 116 738-861 2-118 (120)
194 2hqr_A Putative transcriptiona 98.0 9.7E-06 3.3E-10 84.1 7.9 61 888-953 2-62 (223)
195 3hdg_A Uncharacterized protein 98.0 2.4E-05 8.1E-10 74.1 9.9 118 738-863 7-124 (137)
196 1srr_A SPO0F, sporulation resp 98.0 2.9E-05 9.8E-10 72.1 10.0 117 739-863 4-120 (124)
197 1dbw_A Transcriptional regulat 98.0 4E-05 1.4E-09 71.4 10.9 118 738-863 3-120 (126)
198 2rdm_A Response regulator rece 97.9 9.7E-05 3.3E-09 69.1 13.5 120 737-865 4-124 (132)
199 3cg0_A Response regulator rece 97.9 5.1E-05 1.7E-09 71.8 11.6 118 737-863 8-127 (140)
200 2j48_A Two-component sensor ki 97.9 4.4E-05 1.5E-09 69.4 10.8 116 738-862 1-116 (119)
201 3crn_A Response regulator rece 97.9 4.5E-05 1.5E-09 71.9 11.1 117 739-863 4-120 (132)
202 2pln_A HP1043, response regula 97.9 6.5E-05 2.2E-09 71.1 12.3 117 735-863 15-132 (137)
203 3f6c_A Positive transcription 97.9 4.3E-05 1.5E-09 71.9 11.0 119 739-865 2-121 (134)
204 2b4a_A BH3024; flavodoxin-like 97.9 9.3E-05 3.2E-09 70.1 13.4 117 736-863 13-130 (138)
205 1xhf_A DYE resistance, aerobic 97.9 5.6E-05 1.9E-09 69.9 11.5 115 739-862 4-118 (123)
206 4e7p_A Response regulator; DNA 97.9 5.9E-05 2E-09 72.8 12.1 120 737-864 19-140 (150)
207 2qxy_A Response regulator; reg 97.9 5.8E-05 2E-09 71.8 11.5 119 738-865 4-122 (142)
208 1mvo_A PHOP response regulator 97.9 9.5E-05 3.2E-09 69.7 12.9 119 738-864 3-121 (136)
209 1zgz_A Torcad operon transcrip 97.9 7.7E-05 2.7E-09 68.8 11.9 115 739-862 3-117 (122)
210 2qzj_A Two-component response 97.9 5.4E-05 1.9E-09 71.9 11.1 117 738-863 4-120 (136)
211 2qr3_A Two-component system re 97.9 3.7E-05 1.3E-09 72.8 9.7 122 738-864 3-126 (140)
212 3h4l_A DNA mismatch repair pro 97.9 1.8E-05 6.2E-10 88.7 8.5 95 552-706 25-127 (367)
213 3dzd_A Transcriptional regulat 97.9 4.2E-05 1.4E-09 86.3 11.0 117 739-863 1-117 (368)
214 2a9o_A Response regulator; ess 97.9 8.3E-05 2.9E-09 68.2 11.0 116 739-863 2-117 (120)
215 1ys7_A Transcriptional regulat 97.8 0.00023 7.8E-09 73.9 15.6 118 738-863 7-124 (233)
216 3kyj_B CHEY6 protein, putative 97.8 4.7E-05 1.6E-09 72.9 9.2 109 737-852 12-123 (145)
217 3kcn_A Adenylate cyclase homol 97.8 5.4E-05 1.8E-09 73.2 9.7 118 738-863 4-122 (151)
218 1ixm_A SPO0B, protein (sporula 97.8 0.00012 4E-09 74.9 12.5 42 439-484 23-64 (192)
219 1kgs_A DRRD, DNA binding respo 97.8 0.00017 5.7E-09 74.5 13.6 118 738-863 2-119 (225)
220 3eul_A Possible nitrate/nitrit 97.8 7.9E-05 2.7E-09 72.0 10.2 121 736-864 13-135 (152)
221 1s8n_A Putative antiterminator 97.8 0.00012 3.9E-09 74.9 12.0 116 739-863 14-130 (205)
222 1qkk_A DCTD, C4-dicarboxylate 97.8 6.4E-05 2.2E-09 72.9 9.6 118 738-863 3-120 (155)
223 3eqz_A Response regulator; str 97.8 5.3E-05 1.8E-09 71.1 8.4 120 738-865 3-126 (135)
224 1dz3_A Stage 0 sporulation pro 97.7 8.2E-05 2.8E-09 69.7 9.3 119 739-864 3-123 (130)
225 3cfy_A Putative LUXO repressor 97.7 6.4E-05 2.2E-09 71.5 8.3 116 740-863 6-121 (137)
226 1yio_A Response regulatory pro 97.7 0.0001 3.5E-09 75.3 10.1 118 738-863 4-121 (208)
227 3cz5_A Two-component response 97.7 0.00012 4E-09 70.8 9.8 119 737-863 4-124 (153)
228 1zh2_A KDP operon transcriptio 97.7 0.00016 5.5E-09 66.4 10.1 115 739-862 2-116 (121)
229 3b2n_A Uncharacterized protein 97.7 0.00018 6.1E-09 67.8 10.4 118 739-864 4-123 (133)
230 3cu5_A Two component transcrip 97.7 0.00027 9.3E-09 67.4 11.6 117 739-863 3-122 (141)
231 2qsj_A DNA-binding response re 97.7 0.00028 9.5E-09 68.1 11.7 121 738-865 3-125 (154)
232 2qv0_A Protein MRKE; structura 97.6 0.00042 1.4E-08 65.8 12.6 117 738-864 9-127 (143)
233 3q9s_A DNA-binding response re 97.6 0.00021 7.3E-09 75.7 11.4 120 737-865 36-155 (249)
234 2gwr_A DNA-binding response re 97.6 0.00026 8.8E-09 74.2 11.8 118 739-865 6-123 (238)
235 3t8y_A CHEB, chemotaxis respon 97.6 0.00028 9.5E-09 69.4 11.0 120 738-865 25-156 (164)
236 1qo0_D AMIR; binding protein, 97.6 9.8E-05 3.4E-09 74.8 7.2 115 736-863 10-124 (196)
237 2jk1_A HUPR, hydrogenase trans 97.6 0.00025 8.4E-09 67.3 9.6 117 739-863 2-118 (139)
238 1ny5_A Transcriptional regulat 97.5 0.00029 1E-08 80.0 11.4 117 739-863 1-117 (387)
239 2oqr_A Sensory transduction pr 97.5 0.00028 9.5E-09 73.2 10.3 117 739-864 5-121 (230)
240 1dc7_A NTRC, nitrogen regulati 97.5 0.00011 3.9E-09 67.6 6.4 117 739-863 4-120 (124)
241 1a04_A Nitrate/nitrite respons 97.5 0.00039 1.3E-08 71.4 10.6 119 738-864 5-125 (215)
242 2wer_A ATP-dependent molecular 97.4 0.00011 3.7E-09 76.8 5.9 58 638-699 74-141 (220)
243 2hqr_A Putative transcriptiona 97.4 0.00045 1.5E-08 71.3 10.4 115 739-865 1-116 (223)
244 3sy8_A ROCR; TIM barrel phosph 97.4 0.00037 1.2E-08 79.4 10.4 118 739-863 4-127 (400)
245 3eq2_A Probable two-component 97.4 0.0002 7E-09 81.2 7.9 117 738-862 5-122 (394)
246 3zrx_A AF1503 protein, osmolar 97.4 0.00037 1.3E-08 63.2 8.1 58 435-497 58-115 (115)
247 1p2f_A Response regulator; DRR 97.4 0.00038 1.3E-08 71.7 9.2 115 739-864 3-117 (220)
248 1a2o_A CHEB methylesterase; ba 97.4 0.0016 5.5E-08 72.8 14.9 118 739-864 4-133 (349)
249 3c3w_A Two component transcrip 97.1 0.00032 1.1E-08 72.9 4.7 117 739-863 2-120 (225)
250 3bre_A Probable two-component 97.1 0.00074 2.5E-08 75.1 7.6 116 739-860 19-135 (358)
251 1yc1_A HSP 86, heat shock prot 97.0 0.00085 2.9E-08 71.8 7.3 58 638-699 116-183 (264)
252 1qy5_A Endoplasmin; GRP94, NEC 97.0 0.00014 4.7E-09 78.1 1.0 58 638-699 76-148 (269)
253 2ior_A Chaperone protein HTPG; 96.9 0.00036 1.2E-08 73.6 3.2 58 638-699 95-164 (235)
254 3klo_A Transcriptional regulat 96.9 0.0035 1.2E-07 64.8 10.7 119 738-864 7-129 (225)
255 1s16_A Topoisomerase IV subuni 96.7 0.0015 5.3E-08 73.8 6.2 49 638-686 64-124 (390)
256 3t0h_A Heat shock protein HSP 96.0 0.0035 1.2E-07 65.5 3.7 59 638-700 80-148 (228)
257 2vyc_A Biodegradative arginine 95.7 0.023 8E-07 69.9 10.0 111 739-853 1-121 (755)
258 3lib_A Hypothetical sensory tr 95.5 0.25 8.7E-06 52.5 16.1 171 108-320 6-178 (290)
259 4dah_A Sporulation kinase D; a 95.3 0.68 2.3E-05 46.9 18.0 154 107-325 6-159 (217)
260 1ei1_A DNA gyrase B, GYRB; ATP 95.2 0.015 5E-07 65.8 5.3 50 638-687 67-128 (391)
261 2gqp_A Endoplasmin; GRP94, HSP 95.1 0.0077 2.6E-07 63.4 2.4 59 638-700 80-153 (236)
262 3peh_A Endoplasmin homolog; st 95.1 0.014 4.9E-07 62.4 4.5 58 638-699 94-162 (281)
263 1y4s_A Chaperone protein HTPG; 95.0 0.043 1.5E-06 64.6 8.8 47 638-684 75-133 (559)
264 3o0i_A HSP90AA1 protein; HSP90 95.0 0.0076 2.6E-07 63.9 2.0 58 638-699 108-175 (256)
265 3lif_A Putative diguanylate cy 94.9 0.79 2.7E-05 47.6 17.3 157 105-325 3-161 (254)
266 2cg9_A ATP-dependent molecular 94.7 0.046 1.6E-06 65.5 8.0 44 638-681 74-127 (677)
267 3li9_A Hypothetical sensory tr 94.6 0.86 2.9E-05 48.3 17.1 170 109-320 8-179 (291)
268 3lic_A Sensor protein; PDC fol 94.2 1.4 4.9E-05 45.9 17.6 162 110-320 5-175 (274)
269 3nmq_A Heat shock protein HSP 93.9 0.018 6.3E-07 60.3 2.0 58 638-699 87-154 (239)
270 2o1u_A Endoplasmin; GRP94, HSP 93.9 0.036 1.2E-06 66.4 4.6 22 638-659 93-114 (666)
271 2ioq_A Chaperone protein HTPG; 93.1 0.062 2.1E-06 64.0 4.9 58 638-699 75-144 (624)
272 3cwv_A DNA gyrase, B subunit, 92.9 0.14 4.7E-06 57.4 7.0 20 549-568 27-46 (369)
273 3fv5_A DNA topoisomerase 4 sub 91.4 0.085 2.9E-06 54.0 2.8 49 638-686 50-110 (201)
274 4duh_A DNA gyrase subunit B; s 90.4 0.32 1.1E-05 50.4 6.0 49 639-687 69-129 (220)
275 4emv_A DNA topoisomerase IV, B 90.2 0.25 8.5E-06 51.4 5.0 50 638-687 73-133 (226)
276 1pvg_A DNA topoisomerase II; G 86.7 0.74 2.5E-05 52.2 6.3 67 638-708 99-178 (418)
277 1zxm_A TOPO IIA ATPase, DNA to 86.0 0.9 3.1E-05 51.3 6.5 49 638-686 87-147 (400)
278 3ttz_A DNA gyrase subunit B; p 85.7 0.88 3E-05 46.3 5.7 29 549-577 28-59 (198)
279 3lnu_A Topoisomerase IV subuni 81.0 0.51 1.8E-05 53.3 1.8 49 639-687 84-144 (408)
280 3ied_A Heat shock protein; HSP 80.6 0.76 2.6E-05 48.4 2.8 56 638-697 131-197 (272)
281 3cwo_X Beta/alpha-barrel prote 75.0 0.26 9E-06 50.4 -2.8 90 765-862 8-99 (237)
282 3c8c_A Methyl-accepting chemot 67.1 1E+02 0.0034 30.3 15.5 148 112-320 3-150 (240)
283 4gfh_A DNA topoisomerase 2; to 61.2 7.5 0.00026 49.7 5.8 50 638-687 94-155 (1177)
284 3rht_A (gatase1)-like protein; 48.5 7.3 0.00025 41.2 2.3 49 887-938 5-57 (259)
285 3n75_A LDC, lysine decarboxyla 47.0 7 0.00024 47.5 2.1 49 900-951 20-68 (715)
286 3e4o_A C4-dicarboxylate transp 42.5 66 0.0022 34.5 8.8 61 248-322 141-201 (305)
287 2oo3_A Protein involved in cat 36.8 33 0.0011 36.5 5.1 58 885-942 112-170 (283)
288 2lci_A Protein OR36; structura 28.0 1.3E+02 0.0043 26.2 6.2 38 889-926 80-117 (134)
289 4g81_D Putative hexonate dehyd 25.0 1.4E+02 0.0048 31.0 7.5 16 672-687 17-32 (255)
290 3lid_A Putative sensory BOX/gg 24.7 4.2E+02 0.014 27.6 11.5 62 247-321 111-181 (295)
291 2kx7_A Sensor-like histidine k 24.2 84 0.0029 28.6 4.6 51 882-939 3-53 (117)
292 4fn4_A Short chain dehydrogena 23.0 1.1E+02 0.0038 31.7 6.3 22 672-694 15-36 (254)
293 3cvo_A Methyltransferase-like 21.1 1.4E+02 0.0047 30.0 6.2 26 886-911 51-76 (202)
294 1i1q_B Anthranilate synthase c 21.0 1.2E+02 0.0042 29.6 5.8 50 888-937 2-54 (192)
295 3dr5_A Putative O-methyltransf 21.0 1.5E+02 0.0051 29.8 6.6 56 886-942 81-140 (221)
296 4e5v_A Putative THUA-like prot 20.9 1.1E+02 0.0036 32.5 5.6 58 887-946 5-73 (281)
297 2pyy_A Ionotropic glutamate re 20.5 1.8E+02 0.0063 27.8 7.1 51 883-939 109-159 (228)
298 3tfw_A Putative O-methyltransf 20.3 1.9E+02 0.0066 29.3 7.4 56 886-941 88-146 (248)
No 1
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=100.00 E-value=5.5e-48 Score=419.14 Aligned_cols=268 Identities=65% Similarity=1.011 Sum_probs=248.3
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeec
Q 002153 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186 (959)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~~~ 186 (959)
|+.+..++|++.|.++||+++.+|+++|+.+++++++|++||+++|++++++.||+++|..|+++++.++|+|+|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~a~~~a~~L~~~l~~~~~~l~~la~l~~~~~f~~~~~~v~~~~F~~~a~~l~~~~pgi~~l~~ap 80 (270)
T 3t4l_A 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAE 80 (270)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCHHHHHHHHHHTGGGCTTEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCHHHHHHHHHHHhhcCCCceEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCcee
Q 002153 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (959)
Q Consensus 187 ~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~ 266 (959)
+|+++||++||++++|.|+++.. ..|++.|++|+||+|+++.|+.++||||+|+|.||++|.+||+||++++
T Consensus 81 ~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~~alG~D~~S~p~rr~al~~Ar~tg~~~l 152 (270)
T 3t4l_A 81 KVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 152 (270)
T ss_dssp CEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGGGGBTBBGGGSHHHHHHHHHHHHHSSCEE
T ss_pred ecCHhHHHHHHhccCceeeccCC--------cccCCCCCccceEEEeCCCCccceeeccCCCHHHHHHHHHHHHhCCcEE
Confidence 99999999999999999988753 4699999999999999999999999999999999999999999999999
Q ss_pred eeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHHHHHHhhccceEEEeecccCCCCCcee
Q 002153 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346 (959)
Q Consensus 267 t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ll~~~~~~~~i~v~v~d~~~~~~~~~ 346 (959)
|+|++|+|.++.|+++++|||..+.+++.|+++|+++++||++++|++++|++.++.+....+.+.+.+||.++.+.+..
T Consensus 153 s~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~~~~l~~~~~~~~l~l~i~D~~~~~~~~~ 232 (270)
T 3t4l_A 153 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLV 232 (270)
T ss_dssp CCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHHHHHHHTSTTGGGEEEEEEECSSTTSCEE
T ss_pred ecCeeeccCCCceEEEEEEeecCCCCCCCCHHHHHHHHhhEEEEEEEHHHHHHHHhhccccCCcEEEEEEECCCCCCCcc
Confidence 99999999889999999999999877778999999999999999999999999998777655789999999998777889
Q ss_pred ccccccCC--CCceEEEeecCCCcccccceeeeccccC
Q 002153 347 MYGSNVSD--DGLWLVSTLNFGDPFRKHEMRCRFKQKA 382 (959)
Q Consensus 347 ~y~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 382 (959)
+|++.... .++.+.+.++||+|+|+|+|+|+|++++
T Consensus 233 ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 233 MYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp EECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred cccCCCCCCCCcceEEEEeecCCchhhhheeeecccCC
Confidence 99997764 3447899999999999999999999874
No 2
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=6.6e-38 Score=337.80 Aligned_cols=231 Identities=26% Similarity=0.400 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q 002153 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505 (959)
Q Consensus 429 ~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~---l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l 505 (959)
+.++.++.|.+|++++||||||||++|.+++++|.+.. .....+++++.+..++++|..++++++++++++.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 44556677889999999999999999999999886532 234457899999999999999999999999999999998
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC----cEEEEEEEee
Q 002153 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVE 581 (959)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G----~I~v~v~~~~ 581 (959)
...++++.+++++++..+...+..+++.+.+......+..+.+|+.+|.||+.||++||+||++.| .|.+.+...
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~- 170 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK- 170 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE-
T ss_pred ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC-
Confidence 889999999999999999999999999998877655556678999999999999999999999654 344443211
Q ss_pred cccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 002153 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (959)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (959)
...+.|+|+|+|+|||++.++++|+|||
T Consensus 171 ----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 198 (258)
T 2c2a_A 171 ----------------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFY 198 (258)
T ss_dssp ----------------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTC
T ss_pred ----------------------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccc
Confidence 1246799999999999999999999999
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
+.+.+.+...+|+||||+|||++++.|||+|++.|.+|+||+|+|++|...
T Consensus 199 ~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 199 RVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred cCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 987766666679999999999999999999999999999999999999854
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=3.9e-33 Score=301.47 Aligned_cols=230 Identities=28% Similarity=0.440 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002153 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (959)
Q Consensus 424 ~e~~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (959)
.+..++.+++++.+.+|++.++|||||||++|.++++++.... .++..+++++.+..+++++..++++++++++.+.+.
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~ 106 (268)
T 4ew8_A 27 ADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGE 106 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3444556666777889999999999999999999999997654 566778999999999999999999999999999999
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEee
Q 002153 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVE 581 (959)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~ 581 (959)
..++..++++.+++++++..+...+..+++.+.+.+++..+ .+.+|+..|.+|+.||+.||+||++. |.|.|++...
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~- 184 (268)
T 4ew8_A 107 MALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA- 184 (268)
T ss_dssp CCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-
T ss_pred cceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-
Confidence 99999999999999999999999999999999999876654 57899999999999999999999976 6776665421
Q ss_pred cccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 002153 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (959)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (959)
...+.|+|.|+|+|||++.++++|+||+
T Consensus 185 ----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~ 212 (268)
T 4ew8_A 185 ----------------------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFV 212 (268)
T ss_dssp ----------------------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTC
T ss_pred ----------------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1247899999999999999999999998
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
+. ..+|+||||+||+++++.|||+|++.|.+++||+|+|++|....
T Consensus 213 ~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 213 GR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp CC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred cC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 53 33699999999999999999999999999999999999998643
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=7.3e-33 Score=317.37 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=190.5
Q ss_pred HHHHHHHHhHhhcchhhhHHHHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 002153 432 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (959)
Q Consensus 432 ~a~~aks~Fla~iSHEIRTPL~~I~-g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (959)
+.++++++|+++++||+||||++|. |+.+++.....++..+++++.+..+..+|..++++++++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 666666544446677899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhcc---CcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC---------cEEEEEE
Q 002153 511 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 578 (959)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k---~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G---------~I~v~v~ 578 (959)
++.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+.+| .|.|++.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999999888 3333344433 34577899999999999999999999765 5766653
Q ss_pred EeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccC
Q 002153 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (959)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 658 (959)
.. ...+.|+|+|+|+|||++.+++||+
T Consensus 274 ~~-----------------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NN-----------------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EC-----------------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred eC-----------------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 21 1247899999999999999999999
Q ss_pred CccccCCCC--------------------cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 659 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 659 pF~q~~~s~--------------------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
|||+.+++. ++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred cccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999987642 2334799999999999999999999999999999999999998643
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=6.9e-34 Score=297.82 Aligned_cols=215 Identities=18% Similarity=0.283 Sum_probs=134.0
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 002153 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (959)
+.+|++.+||||||||++|.++++++.....+ +..+++++.+..+++++..++++++++++++.+....+..++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45799999999999999999999988655433 33467788889999999999999999999999988888889999999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc-EEEEEEEeecccccchhhhhhc
Q 002153 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDSIEVETELS 594 (959)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~i~i~~~~~ 594 (959)
+++++..+...+..+++.+.+.+++.. ..+.+|+..|.||+.||++||+||++.|. |.|.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--c-------------
Confidence 999999999999999999999987653 46789999999999999999999996654 444331 0
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 002153 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (959)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (959)
+ .|+|+|+|+|||++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcc
Confidence 0 1789999999999999999999997532 344699
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
||||+|||++++.|||+|+++|.+++||+|+|++|...
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 99999999999999999999999999999999999754
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.1e-32 Score=316.40 Aligned_cols=219 Identities=18% Similarity=0.237 Sum_probs=174.2
Q ss_pred HhHhhcchhhhH-----HHHHHHHHHHHHhcCCCChHH----HHHHH--HHHHHHHHHHHHHHHHHHHHhhhc-CCccee
Q 002153 439 QFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLELE 506 (959)
Q Consensus 439 ~Fla~iSHEIRT-----PL~~I~g~lelL~~~~l~~~q----~~~l~--~i~~s~~~L~~lIndlLd~skies-g~l~l~ 506 (959)
+|+++++||||| ||+.|.|+++++.....+... ++|++ .+.+.+.+| +|+++|++++.++ +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 588899999999 899999999998765444333 34777 477888888 9999999999988 566676
Q ss_pred e----EeecHHHHHHHHHHHHhhhhhc-----cCcEEEEEec--CCCCceEEecHHHHHHHHHHHHHHHHhccCCCc---
Q 002153 507 A----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 572 (959)
Q Consensus 507 ~----~~~dL~~ll~~vl~~~~~~a~~-----k~I~l~~~i~--~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~--- 572 (959)
. .++++.+++++++..+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||++.|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8899999999999999999887 9999887541 233456889999999999999999999997765
Q ss_pred -----EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCC
Q 002153 573 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647 (959)
Q Consensus 573 -----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 647 (959)
|.|++... ...+.|+|+|+|+|
T Consensus 255 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 281 (394)
T 2btz_A 255 LILPPIKVMVALG-----------------------------------------------------EEDLSIKMSDRGGG 281 (394)
T ss_dssp SCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77766321 12478999999999
Q ss_pred CChhhHhhccCCccccCCC-----CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 648 IPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 648 I~~e~~~~IFepF~q~~~s-----~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 282 I~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 282 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999998765 4555689999999999999999999999999999999999999864
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=3.1e-32 Score=312.84 Aligned_cols=219 Identities=16% Similarity=0.223 Sum_probs=184.1
Q ss_pred HHhHhhcchhhhH-----HHHHHHHHHHHHhcCCC----ChHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhhcCCcce
Q 002153 438 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTEL----DVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLEL 505 (959)
Q Consensus 438 s~Fla~iSHEIRT-----PL~~I~g~lelL~~~~l----~~~q~~~l~--~i~~s~~~L~~lIndlLd-~skiesg~l~l 505 (959)
.+|+++++||||| ||+.|.|+++++..... ....+++++ .+.+.+.+| +|+++|+ +++. ++...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3578889999999 88888999997765432 334477888 688899999 9999999 6776 676666
Q ss_pred ee----EeecHHHHHHHHHHHHhhhhhcc-----CcEEEEEe--cCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc--
Q 002153 506 EA----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-- 572 (959)
Q Consensus 506 ~~----~~~dL~~ll~~vl~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-- 572 (959)
.. .++++.+++++++..+...+..+ ++++.+.+ .+..+..+.+|+.+|+|||.|||+||+||+.+|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66 78999999999999999999988 99988754 2233457889999999999999999999997664
Q ss_pred ------EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCC
Q 002153 573 ------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646 (959)
Q Consensus 573 ------I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 646 (959)
|.|++... ...+.|+|+|+|+
T Consensus 253 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 279 (394)
T 2e0a_A 253 QPSLTPIEVIVVLG-----------------------------------------------------KEDLTIKISDRGG 279 (394)
T ss_dssp SSSCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred cCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCC
Confidence 77766321 1247899999999
Q ss_pred CCChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 647 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 647 GI~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 280 GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 99999999999999998765 5556689999999999999999999999999999999999999853
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=7e-32 Score=311.18 Aligned_cols=219 Identities=20% Similarity=0.231 Sum_probs=179.0
Q ss_pred HHhHhhcchhhhH-----HHHHHHHHHHHHhcCCCCh----HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc----C-
Q 002153 438 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTELDV----TQQDYVRT--AQASGKALVSLINEVLDQAKVES----G- 501 (959)
Q Consensus 438 s~Fla~iSHEIRT-----PL~~I~g~lelL~~~~l~~----~q~~~l~~--i~~s~~~L~~lIndlLd~skies----g- 501 (959)
.+|.+. +||||| ||+.|.|+++++.....+. ..+++++. +.+.+.+| +|++++++++.+. +
T Consensus 107 ~~f~~~-~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~ 183 (407)
T 2q8g_A 107 YDFTDT-VIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSH 183 (407)
T ss_dssp HHHHHH-HHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---------
T ss_pred HHHHHH-HHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCC
Confidence 455555 599999 9999999999877654332 23667777 67778888 9999999999976 3
Q ss_pred --CcceeeEeecHHHHHHHHHHHHhhhhhcc-----CcEEEEEe--cCCCCceEEecHHHHHHHHHHHHHHHHhccCCCc
Q 002153 502 --KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH 572 (959)
Q Consensus 502 --~l~l~~~~~dL~~ll~~vl~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~ 572 (959)
...+...++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+.+|+
T Consensus 184 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 263 (407)
T 2q8g_A 184 RKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHH 263 (407)
T ss_dssp -CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677889999999999999999999888 99998876 1233456889999999999999999999997653
Q ss_pred --------EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEc
Q 002153 573 --------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644 (959)
Q Consensus 573 --------I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 644 (959)
|.|++... ...+.|+|+|+
T Consensus 264 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~ 290 (407)
T 2q8g_A 264 ANRGVYPPIQVHVTLG-----------------------------------------------------NEDLTVKMSDR 290 (407)
T ss_dssp TTTCCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEec
Confidence 77765321 12478999999
Q ss_pred CCCCChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 645 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 645 G~GI~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|+|||++.+++||+|||+.+.+ ..+..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 291 G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 291 GGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp SCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9999999999999999998765 2445579999999999999999999999999999999999999853
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=6.9e-31 Score=279.06 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=182.1
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (959)
+++.+|++.++|||||||++|.++++++.+...+ +..+++++.+..+++++..++++++++++.+.+ ...++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 4567899999999999999999999999876654 455789999999999999999999999987765 34678999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCcEEEEEEEeecccccchhhhh
Q 002153 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
.++++++..+...+..+++.+.+..++ ..+.+|+..|.+|+.||+.||+||++ .|.|.|.+...
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~------------ 152 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID------------ 152 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe------------
Confidence 999999999999999999998887653 46789999999999999999999995 56666665421
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (959)
...+.|+|+|+|+||+++..+++|+||++.+ ..+
T Consensus 153 -----------------------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~ 186 (244)
T 3d36_A 153 -----------------------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVK 186 (244)
T ss_dssp -----------------------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGG
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCC
Confidence 1247899999999999999999999999643 246
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
|+||||++|+++++.|||+|++.|.+++||+|+|++|+...
T Consensus 187 g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 187 GTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp CCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 89999999999999999999999999999999999999754
No 10
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=3.2e-31 Score=306.70 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=168.9
Q ss_pred HHHhHhhcchhhhHHHH-----HHHHHHHHHhcCCCC----hHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh-cCCcc
Q 002153 437 KSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKVE-SGKLE 504 (959)
Q Consensus 437 ks~Fla~iSHEIRTPL~-----~I~g~lelL~~~~l~----~~q~~~l~~i~~s--~~~L~~lIndlLd~skie-sg~l~ 504 (959)
+.+|. +++|||||||+ .|.|+++++.....+ +..+++++.+..+ +.++ +|+++|.+.+.. .+...
T Consensus 118 ~~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 34565 56699999999 789999987653222 2345677776555 7777 999997766543 34332
Q ss_pred e----eeEeecHHHHHHHHHHHHhhhhhc-----cCcEEEEEec--CCCCceEEecHHHHHHHHHHHHHHHHhccCCC--
Q 002153 505 L----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-- 571 (959)
Q Consensus 505 l----~~~~~dL~~ll~~vl~~~~~~a~~-----k~I~l~~~i~--~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-- 571 (959)
. ...++++.+++++++..+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||+.+|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 347899999999999999988876 8888877542 13345688999999999999999999999765
Q ss_pred -------cEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEc
Q 002153 572 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644 (959)
Q Consensus 572 -------~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 644 (959)
.|.|.+... ...+.|+|+|+
T Consensus 275 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D~ 301 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISDL 301 (419)
T ss_dssp TCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEEC
Confidence 366665321 12478999999
Q ss_pred CCCCChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 645 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 645 G~GI~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|+|||++.+++||+|||+.+++ .++..+|+||||+|||.+++.|||+|.++|.+|.||+|+|++|...
T Consensus 302 G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 302 GGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp SCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999999998765 4455689999999999999999999999999999999999999853
No 11
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=1.5e-30 Score=291.44 Aligned_cols=214 Identities=28% Similarity=0.421 Sum_probs=180.0
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (959)
.++.+|++.++|||||||++|.++++++.+...+ +...++++.+..+++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 3567899999999999999999999999765433 345789999999999999999999999994 335677889999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhcc-CCCcEEEEEEEeecccccchhhhh
Q 002153 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT-~~G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
+++++++..+...+..+++.+.+.+++.. ..+.+|+..|.||+.||++||+||+ +.|.|.|++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~------------ 273 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM------------ 273 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec------------
Confidence 99999999999999999999988887553 4678999999999999999999999 467777765421
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (959)
...+.|+|+|+|+|||++.+++||+||++.+ .+
T Consensus 274 -----------------------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 274 -----------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp -----------------------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred -----------------------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCC------CC
Confidence 1247899999999999999999999999642 36
Q ss_pred CccchHHHHHHHHH-HcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 673 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 673 GtGLGLsI~k~LVe-~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
|+||||+|||++++ .|||.|.++|.++ ||+|+|++|...
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 99999999999999 8999999999865 999999999854
No 12
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=9.6e-30 Score=273.49 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=150.4
Q ss_pred hHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHH
Q 002153 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (959)
Q Consensus 440 Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (959)
+.++|||||||||++|.|++++|.+...++..+++++.|.++++++..+ +++.++..+.. ....++++.++..
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~l----l~~~r~~~~~~-~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADL----LQFTRVAFGAS-ASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHH----HHHHHHHTTCC-SSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH----HHHHHHhhccc-cccccccHHHHHH--
Confidence 6678999999999999999999988877777788899998888776655 45666544432 2334567665443
Q ss_pred HHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-cEEEEEEEeecccccchhhhhhccccC
Q 002153 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELSSSKN 598 (959)
Q Consensus 520 l~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i~~~~~~~~~ 598 (959)
.+...+..+++++...+++. .++..+.|++.||++||+||++.| .|.|++...
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~------~~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~------------------ 175 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQ------AMNKPSSRAVLNIAQIAASALPAGGVATVKGVAA------------------ 175 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSC------EECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE------------------
T ss_pred --HHHHHHHhhhhhccccccch------hhhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE------------------
Confidence 33445567888887655432 136789999999999999999765 566655321
Q ss_pred cCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCC--CChhhHhhccCCccccCCCCcCcCCCccc
Q 002153 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGI 676 (959)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~IFepF~q~~~s~s~~~~GtGL 676 (959)
...+.|+|+|+|+| ||++..+++|+||++. +.+|+||
T Consensus 176 -----------------------------------~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GL 214 (247)
T 4fpp_A 176 -----------------------------------DGRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWV 214 (247)
T ss_dssp -----------------------------------TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHH
T ss_pred -----------------------------------CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccH
Confidence 12356888888866 7799999999999742 3469999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002153 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (959)
Q Consensus 677 GLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp 709 (959)
||+|||+||+.|||+|+++|.+| |++|+++||
T Consensus 215 GLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 215 QAAYLNALVRAAGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEec
Confidence 99999999999999999999876 999999998
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=3.9e-27 Score=268.86 Aligned_cols=249 Identities=15% Similarity=0.178 Sum_probs=177.4
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (959)
.+|.+|+++++|||+||++.|.++.+.+.. +.+..++++|..+++++++++. .. ..+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~------~~--~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM------KI--RMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH------HH--HEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH------Hc--ceecHHH
Confidence 467899999999999999999887665432 5678888999999999999873 12 2456778
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHH---HHHHHHHHHHHHHHhcc-------------CCCcEEEEEE
Q 002153 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFT-------------EKGHIFVTVY 578 (959)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~---rL~QIL~NLl~NAiKfT-------------~~G~I~v~v~ 578 (959)
+++.+...+...+..++.++.+.+.... ...|+. ++.|+|.||+.||+||+ +.|.|.|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 8888888888888877777776665432 235775 55555999999999996 5677777664
Q ss_pred EeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhH-----
Q 002153 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ----- 653 (959)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~----- 653 (959)
.. ...+.|+|+|+|+||+++.+
T Consensus 146 ~~-----------------------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~ 172 (379)
T 1b3q_A 146 HE-----------------------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAI 172 (379)
T ss_dssp EE-----------------------------------------------------TTEEEEEEEECSCCCCHHHHHHHHH
T ss_pred Ee-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHHHH
Confidence 21 12478999999999999987
Q ss_pred -------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCC
Q 002153 654 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (959)
Q Consensus 654 -------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~ 714 (959)
++||+|||+.... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++++|+....
T Consensus 173 ~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~~ 251 (379)
T 1b3q_A 173 EKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAI 251 (379)
T ss_dssp HSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEE
T ss_pred HcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcccc
Confidence 8999999876544 23457999999999999999999999999999999999999986531
Q ss_pred CCCC-----------cccc-ccccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHH
Q 002153 715 STSN-----------EHNS-QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759 (959)
Q Consensus 715 ~~~~-----------~~~~-~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~ 759 (959)
.... +... ......+...-....|.+++.++|+.+....++..|.
T Consensus 252 ~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~~~~~vl~vrg~~vpl~~L~~lL~ 308 (379)
T 1b3q_A 252 ICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQ 308 (379)
T ss_dssp EEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEETTEEEEEETTEEEEEEEHHHHTT
T ss_pred ceEEEEEECCEEEccchheeeEEEeeCHHHeEEeCCccEEEECCcEEeEEEHHHHhC
Confidence 1000 0000 0001111111223467899999999887666665543
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=3.5e-23 Score=203.90 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=126.6
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccc
Q 002153 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (959)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i 587 (959)
+++++.+++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||++. .|.|++...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 46899999999999999999999999999886653 47899999999999999999999976 565554321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 002153 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (959)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (959)
...+.|+|.|+|+||+++.++++|+||++.+.+
T Consensus 72 ----------------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~- 104 (152)
T 1id0_A 72 ----------------------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL- 104 (152)
T ss_dssp ----------------------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-
T ss_pred ----------------------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-
Confidence 124789999999999999999999999976542
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+|+||||++|+++++.|||+|.+.|.++.||+|++++|+..
T Consensus 105 ---~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 105 ---RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp ---CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 368999999999999999999999999999999999999864
No 15
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=4.1e-23 Score=215.98 Aligned_cols=189 Identities=9% Similarity=0.093 Sum_probs=140.9
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (959)
..+.++...+.|++++||++|.+.++++... ..++...+.+..+....+++...+.+++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 3457788899999999999999999887643 2223345677777777777777777665322 24577
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhh
Q 002153 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (959)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (959)
.+.++.+...+ ..+++.+.+.++...+.....++..+.+|+.||++||+||++.|.|.|++...
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------------ 158 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL------------ 158 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE------------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe------------
Confidence 77777776655 45788888776654444345678889999999999999999888877776421
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 002153 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (959)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (959)
...+.|+|+|+|+|||++.. +
T Consensus 159 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~------------------~ 179 (218)
T 3ehh_A 159 -----------------------------------------WKEVVITVSDDGTFKGEENS------------------F 179 (218)
T ss_dssp -----------------------------------------TTEEEEEEEESSCCCC-----------------------
T ss_pred -----------------------------------------CCEEEEEEEECCcCCCCCCC------------------C
Confidence 12478999999999999865 5
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
|+||||++|+.+++.|||+|++.|.+ ||+|++++|+.
T Consensus 180 g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 180 SKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ---CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 89999999999999999999999998 99999999974
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=3.6e-23 Score=203.78 Aligned_cols=146 Identities=16% Similarity=0.303 Sum_probs=115.6
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccc
Q 002153 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585 (959)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~ 585 (959)
+..++++.+++++++..+...+. ++.+.+..+ .+..+.+|+.+|.||+.||++||+||++.|.|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~---- 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR---- 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET----
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC----
Confidence 45689999999999999877654 455555443 3446889999999999999999999999887766654211
Q ss_pred cchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCC
Q 002153 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665 (959)
Q Consensus 586 ~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~ 665 (959)
..+.|+|.|+|+||+++.++++|+||++.+.
T Consensus 76 -------------------------------------------------~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~ 106 (150)
T 1ysr_A 76 -------------------------------------------------AGVEIAIDDNGSGVPEGERQVVFERFSRGST 106 (150)
T ss_dssp -------------------------------------------------TEEEEEEEESSSCCCGGGHHHHHTSCC----
T ss_pred -------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhcccccCCC
Confidence 1378999999999999999999999998543
Q ss_pred CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 666 s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+ ..+|+||||+||+++++.|||+|.+.|.+++||+|++++|+.
T Consensus 107 ~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 107 A---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp ----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred C---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 2 357999999999999999999999999999999999999974
No 17
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=9.2e-23 Score=206.88 Aligned_cols=153 Identities=28% Similarity=0.474 Sum_probs=125.7
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CcEEEEEEEeecccccc
Q 002153 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSI 587 (959)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i 587 (959)
++++.+++++++..+... ..+++.+.+.+++. +..+.+|+..|.+|+.||+.||+||+.. |.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~------ 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE------ 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc------
Confidence 689999999999999988 88999999888754 3468899999999999999999999954 66666664321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 002153 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (959)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (959)
+...+.|+|.|+|+||+++.++++|+||++.+.+.
T Consensus 74 ---------------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~ 108 (177)
T 3sl2_A 74 ---------------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR 108 (177)
T ss_dssp ---------------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC---
T ss_pred ---------------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC
Confidence 11247899999999999999999999999987766
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCC
Q 002153 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (959)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~ 714 (959)
+...+|+||||+||+++++.|||+|.+.|.++.||+|++++|+....
T Consensus 109 ~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~~ 155 (177)
T 3sl2_A 109 TRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQ 155 (177)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC--
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCCc
Confidence 66778999999999999999999999999999999999999997543
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=3.8e-22 Score=196.08 Aligned_cols=146 Identities=29% Similarity=0.456 Sum_probs=124.8
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCcEEEEEEEeeccc
Q 002153 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVV 584 (959)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~ 584 (959)
+..++++.+++++++..+...+..+++++.+.+++. +..+.+|+..|.+|+.||++||+||++ .|.|.|++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 456899999999999999999999999999988754 446889999999999999999999994 56666655321
Q ss_pred ccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccC
Q 002153 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (959)
Q Consensus 585 ~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~ 664 (959)
...+.|+|+|+|+||+++.++++|+||++.+
T Consensus 77 -------------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 77 -------------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp -------------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred -------------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 1247899999999999999999999998632
Q ss_pred CCCcCcCCCccchHHHHHHHHH-HcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002153 665 PSISRTHGGTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 712 (959)
Q Consensus 665 ~s~s~~~~GtGLGLsI~k~LVe-~mgG~I~v~S~~g~GttF~~~lp~~~ 712 (959)
.+|+||||++|+++++ .|||++.+.+.++ |++|++++|...
T Consensus 108 ------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 108 ------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 149 (152)
T ss_dssp --------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESCC
T ss_pred ------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCCC
Confidence 3689999999999999 9999999999865 999999999854
No 19
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.89 E-value=1.7e-22 Score=201.44 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=123.1
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecc
Q 002153 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (959)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~ 583 (959)
+++..++++.+++++++..+.. ++..+.+.+.+. +..+.+|+..|.||+.||++||+||+ .|.|.|++...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~-- 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEP-- 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEET--
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcC--
Confidence 4456789999999999998653 334444444333 34578999999999999999999999 888887764321
Q ss_pred cccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 002153 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (959)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (959)
..+.|.|+|+|+||+++.++++|+||++.
T Consensus 76 ---------------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~f~~~ 104 (161)
T 1bxd_A 76 ---------------------------------------------------NRAWFQVEDDGPGIAPEQRKHLFQPFVRG 104 (161)
T ss_dssp ---------------------------------------------------TEEEEEEEEESSCSCTTGGGCSSCCCCCC
T ss_pred ---------------------------------------------------CEEEEEEEeCCCCCCHHHHHHhCCCceeC
Confidence 24679999999999999999999999987
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002153 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (959)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~~~ 713 (959)
+.+ +..+|+||||+||+++++.|||+|.+.|.++.|++|++++|+...
T Consensus 105 ~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 105 DSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp SCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 653 334799999999999999999999999999999999999998653
No 20
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=2.9e-22 Score=198.49 Aligned_cols=156 Identities=26% Similarity=0.425 Sum_probs=110.4
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccC--CCcEEEEEEEee
Q 002153 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE--KGHIFVTVYLVE 581 (959)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~--~G~I~v~v~~~~ 581 (959)
.++..++++.+++++++..+... ..+++++.+.+++..+. +.+|+..|.||+.||++||+||+. .|.|.|++....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45667899999999999999987 88899999988776554 788999999999999999999997 677777765432
Q ss_pred cccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 002153 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (959)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (959)
.... ....+...+.|+|.|+|+||+++.++++|+||+
T Consensus 80 ~~~~-------------------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 80 QLTL-------------------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp EEEE-------------------------------------------TTEEEEEEEEEEEEEECTTC-------------
T ss_pred cccc-------------------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 2000 001122357899999999999999999999999
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+.+ .+|+||||++|+++++.|||+|.++|.+++ |+|++++|+.
T Consensus 117 ~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 117 SGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp -------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred cCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 642 368999999999999999999999999887 9999999974
No 21
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.86 E-value=9.5e-22 Score=201.55 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=120.5
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhcc-------------CCCcEE
Q 002153 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-------------EKGHIF 574 (959)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT-------------~~G~I~ 574 (959)
.++++.++++++...+...+..+++.+.+.++.........+..++.||+.||+.||+||+ +.|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4689999999999999999999998888887654332222334556666999999999995 456666
Q ss_pred EEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhH-
Q 002153 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 653 (959)
Q Consensus 575 v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 653 (959)
|++... ...+.|+|+|+|+||+++.+
T Consensus 83 I~~~~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 83 LSARHE-----------------------------------------------------GNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEE-----------------------------------------------------TTEEEEEEEECSSCCCHHHHH
T ss_pred EEEEec-----------------------------------------------------CCEEEEEEEeCCCCcCHHHHh
Confidence 665421 12478999999999999986
Q ss_pred -----------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002153 654 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (959)
Q Consensus 654 -----------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~ 710 (959)
+++|+||++.+.. .+..+|+||||+||+++++.|||+|.+.|.+++||+|++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 110 RKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999975432 2334689999999999999999999999999999999999997
No 22
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.78 E-value=1.1e-18 Score=167.62 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=99.2
Q ss_pred ecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchh
Q 002153 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589 (959)
Q Consensus 510 ~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i 589 (959)
+++.+.++.+.. .+..+++++.+.++...+.....++..+.+++.||++||+||++.+.|.|++...
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~--------- 68 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL--------- 68 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE---------
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe---------
Confidence 355555555554 4456788888776654443344688999999999999999999888887776421
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 002153 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (959)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (959)
...+.++|+|+|+|||++..
T Consensus 69 --------------------------------------------~~~~~i~V~D~G~Gi~~~~~---------------- 88 (128)
T 3ehg_A 69 --------------------------------------------WKEVVITVSDDGTFKGEENS---------------- 88 (128)
T ss_dssp --------------------------------------------TTEEEEEEEESSCCCSCSSC----------------
T ss_pred --------------------------------------------CCEEEEEEEECCcCcCcccC----------------
Confidence 12478999999999998754
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+|+||||++++++++.|||+|.+.|.+ ||+|++++|+.
T Consensus 89 --~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 --FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp --CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred --CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 479999999999999999999999998 99999999974
No 23
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.6e-18 Score=164.38 Aligned_cols=125 Identities=22% Similarity=0.369 Sum_probs=103.6
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccc
Q 002153 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (959)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i 587 (959)
.++++.+++++++..+ ..+++.+.+.++...+.....|+..|.||+.||++||+||++.|.|.|++..
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~-------- 70 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV-------- 70 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE--------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--------
Confidence 4678999999998877 5677777777766554434456889999999999999999988888777642
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 002153 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (959)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (959)
+.. +.++|+|+|+||+++.
T Consensus 71 ---------------------------------------------~~~-~~i~v~D~G~gi~~~~--------------- 89 (129)
T 3zxo_A 71 ---------------------------------------------DDD-LCIEVTDNGRGMPDEF--------------- 89 (129)
T ss_dssp ---------------------------------------------SSE-EEEEEEECCCCCTTTT---------------
T ss_pred ---------------------------------------------cCC-EEEEEecCCCCCCccc---------------
Confidence 112 6799999999999764
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEEeC
Q 002153 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (959)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GttF~~~lp~~ 711 (959)
+||||+||+++++.|||++.+.|.++ +|++|++++|+.
T Consensus 90 ------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp ------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred ------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 69999999999999999999999999 999999999974
No 24
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.8e-17 Score=155.29 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhh
Q 002153 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590 (959)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~ 590 (959)
++.+.+++++..+ ..+++.+.+.++...+.....++..+.+|+.||+.||+||++.|.|.|++...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 45667777766654443333458899999999999999999988877766421
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 002153 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (959)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (959)
.. +.++|+|+|+||+++.
T Consensus 68 -------------------------------------------~~-~~i~v~D~G~gi~~~~------------------ 85 (124)
T 3zxq_A 68 -------------------------------------------DD-VRVEVVDDGVGISGDI------------------ 85 (124)
T ss_dssp -------------------------------------------EE-EEEEEEECCCSSCGGG------------------
T ss_pred -------------------------------------------CC-EEEEEEECCCCCCccc------------------
Confidence 12 6799999999999875
Q ss_pred CCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002153 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (959)
Q Consensus 671 ~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF~~~lp~~ 711 (959)
+||||++++++++.|||++.+.|.+++|++|++++|+.
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 39999999999999999999999999999999999974
No 25
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.64 E-value=3.1e-16 Score=184.16 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=95.7
Q ss_pred EEec-HHHHHHHHHHHHHHHHhccCCCc----EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccC
Q 002153 546 LIGD-PGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ 620 (959)
Q Consensus 546 v~gD-~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 620 (959)
+.+| +.+|.||+.||++||++|+..|+ |.|++...+.
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~-------------------------------------- 65 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD-------------------------------------- 65 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET--------------------------------------
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC--------------------------------------
Confidence 3344 59999999999999999998764 6665532110
Q ss_pred CCCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc-CcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 002153 621 DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (959)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s-~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (959)
+...+.|+|+|||+|||++.++++|+||++.+.... +..+|+||||++|+.++++|||+ |.+.|.+
T Consensus 66 ------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~ 133 (530)
T 2zbk_B 66 ------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP 133 (530)
T ss_dssp ------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEEC
T ss_pred ------------cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEec
Confidence 012468999999999999999999999987765433 45689999999999999999999 9999999
Q ss_pred CCcE-EEEEEEEeCC
Q 002153 699 NIGS-TFTFTAVFGN 712 (959)
Q Consensus 699 g~Gt-tF~~~lp~~~ 712 (959)
+.|+ +|+|++|+..
T Consensus 134 ~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 134 VNSKRIYTFKLKIDI 148 (530)
T ss_dssp TTCSEEEEEEEEEET
T ss_pred CCCeEEEEEEEEecc
Confidence 9887 9999999864
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.64 E-value=5.7e-16 Score=180.00 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=96.2
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCCCc----EEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCC
Q 002153 546 LIGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (959)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (959)
+.+|+.+|.||+.||++||++|+..|. |.|++...+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 346889999999999999999997764 6555532110
Q ss_pred CCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc-CcCCCccchHHHHHHHHHHcCCE-EEEEEeCC
Q 002153 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 699 (959)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s-~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g 699 (959)
+...+.|+|+|||+|||++.++++|+||++.+...+ +..+|+||||++|+.+++.|||+ |.+.|.++
T Consensus 67 -----------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~ 135 (471)
T 1mu5_A 67 -----------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135 (471)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECT
T ss_pred -----------cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecC
Confidence 012468999999999999999999999987765433 45689999999999999999999 99999999
Q ss_pred CcE-EEEEEEEeCC
Q 002153 700 IGS-TFTFTAVFGN 712 (959)
Q Consensus 700 ~Gt-tF~~~lp~~~ 712 (959)
.|+ +|+|++|+..
T Consensus 136 ~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 136 NSKRIYTFKLKIDI 149 (471)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CCceEEEEEEeccc
Confidence 997 9999999864
No 27
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.63 E-value=1e-15 Score=149.77 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=82.3
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC----CcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002153 548 GDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (959)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (959)
.|...+.+++.||+.||+||+.. |.|.|++...+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~------------------------------------------ 72 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIED------------------------------------------ 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEET------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeC------------------------------------------
Confidence 48889999999999999999964 67776654211
Q ss_pred CCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEE
Q 002153 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703 (959)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~Gtt 703 (959)
..+.|+|+|+|+||+ .++++|+||++.+. ...|+|+||++|+++++ ++.++|.+++||+
T Consensus 73 -----------~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~ 131 (145)
T 1th8_A 73 -----------GVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTT 131 (145)
T ss_dssp -----------TEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEE
T ss_pred -----------CEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEE
Confidence 247899999999999 78999999997543 34689999999999998 9999999999999
Q ss_pred EEEEEEeCCC
Q 002153 704 FTFTAVFGNG 713 (959)
Q Consensus 704 F~~~lp~~~~ 713 (959)
|++++|+...
T Consensus 132 v~~~lp~~~~ 141 (145)
T 1th8_A 132 VYLKKHGIHH 141 (145)
T ss_dssp EEEEECCC--
T ss_pred EEEEEecccc
Confidence 9999998653
No 28
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.62 E-value=1.8e-15 Score=163.23 Aligned_cols=186 Identities=19% Similarity=0.195 Sum_probs=129.6
Q ss_pred ceEEEeCCchhHHHHHHHHHHH-cCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~-~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+||||||++..+..++..|+. .|+.+..++. .+++..+ ....+|++++|..++..++.. .++.+++.. .
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~-~~~~~~~--~~~~~dlvllD~~mP~~~G~~---~~~~lr~~~---~ 75 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDT-LEGARHC--QGDEYVVALVDLTLPDAPSGE---AVKVLLERG---L 75 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESS-TGGGTTC--CTTTEEEEEEESCBTTBTTSH---HHHHHHHTT---C
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHHh--hcCCCcEEEEeCCCCCCCHHH---HHHHHHhCC---C
Confidence 5899999999999888888865 6898876554 4444333 235799999999987765443 445555531 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCEEEEEeCCHH
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILivdDn~~ 897 (959)
|.+++. ...+....... ...|...++.||...+.... +..... .......+||||||++.
T Consensus 76 pvi~lt-~~~~~~~~~~a-~~~Ga~dyl~Kp~~~~~~~~-~~~~~~-----------------~~~~~~~~ILivDD~~~ 135 (259)
T 3luf_A 76 PVVILT-ADISEDKREAW-LEAGVLDYVMKDSRHSLQYA-VGLVHR-----------------LYLNQQIEVLVVDDSRT 135 (259)
T ss_dssp CEEEEE-CC-CHHHHHHH-HHTTCCEEEECSSHHHHHHH-HHHHHH-----------------HHHHTTCEEEEECSCHH
T ss_pred CEEEEE-ccCCHHHHHHH-HHCCCcEEEeCCchhHHHHH-HHhhhh-----------------HhhcCCCcEEEEeCCHH
Confidence 444433 22222222222 22377899999976543221 111100 00112458999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 898 ~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++..+...|++.|+.+..+.||.+|++.+.....||+||+|++||+|||+++++..
T Consensus 136 ~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~l 191 (259)
T 3luf_A 136 SRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRML 191 (259)
T ss_dssp HHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999998532348999999999999999999864
No 29
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.57 E-value=5.7e-14 Score=151.00 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=131.6
Q ss_pred cccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC
Q 002153 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813 (959)
Q Consensus 734 ~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 813 (959)
..++|.+||||||++..+..+..+|+++|++|..+.+ .....++++++|..+.....
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~-------------- 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQ-------------- 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCC--------------
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCccccc--------------
Confidence 4578999999999999999999999999999998875 13367899999976543211
Q ss_pred CCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCCCCcccCCCCc-chhhhccCCCEEEEE
Q 002153 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIV 892 (959)
Q Consensus 814 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILiv 892 (959)
...++.+...... ..........+.+|.....+...+.+...............+. ........+.+||||
T Consensus 64 ---~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILiv 135 (254)
T 2ayx_A 64 ---GRAVVTFCRRHIG-----IPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVV 135 (254)
T ss_dssp ---SSEEEEECSSCCC-----SCCTTSTTEEEECSSCCSHHHHHHHHHHTCCCSCCCCCCSCCCSCCCCCCCCCCEEEEE
T ss_pred ---cceEEEEecccCC-----CcccccCCceeccccchHHHHHHHHHHhhhccccccccccCCCccccccCCCCCEEEEE
Confidence 0112222111100 0001122356778888888888877665332111100000000 001112345789999
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 893 dDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
|||+.++..+..+|++.||+|..+.||.+|++.+. ...||+||||++||+|||+++++..
T Consensus 136 dd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~dlvl~D~~mp~~~G~~l~~~i 195 (254)
T 2ayx_A 136 DDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRI 195 (254)
T ss_dssp ESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-HSCCSEEEEEESSCSSCCHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999985 4679999999999999999999864
No 30
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.47 E-value=1e-13 Score=143.98 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=87.8
Q ss_pred HHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHHHcCC
Q 002153 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763 (959)
Q Consensus 684 LVe~mgG~I~v~S~~g~GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~ 763 (959)
-+.+|||.|.++|++|+||+|+|++|+......... ..........+.+||||||++..+..++..|+.+|+
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQET--------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp C-----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccc--------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999998654322111 111112345678999999999999999999999999
Q ss_pred -EEEEEcCHHHHHHHHhcC-----------CCcccEEEEeccccccCccchHHHHHHHHhcCCC--CCceEEEEecCC-C
Q 002153 764 -QVEVVSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG--FQSKLFLLANSI-S 828 (959)
Q Consensus 764 -~v~~~~~~~~al~~l~~~-----------~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~-~ 828 (959)
.|..+.++.+|++.+... ...+|++++|..++..+ ...+++.+++.... ....+++++... .
T Consensus 87 ~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~---G~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 87 SEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD---GYEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC---HHHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred CeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC---HHHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 999999999999998763 35799999999886543 33455666653211 222333333322 2
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 829 ~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
....... ...|...++.||+. .|...+.+++..
T Consensus 164 ~~~~~~~-~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 164 SEEARET-IQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHH-HHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred HHHHHHH-HhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 1222112 22367889999998 788888877743
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.37 E-value=7.9e-13 Score=157.32 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=86.8
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCC-C---cEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCC
Q 002153 546 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (959)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (959)
+.+|+.+|.|++.||++||++|+.. | .|.|++...
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~----------------------------------------- 69 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT----------------------------------------- 69 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----------------------------------------
Confidence 4579999999999999999999974 4 455443211
Q ss_pred CCCCCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCC--CcCcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 002153 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (959)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s--~s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (959)
+...+.|+|+|+|+|||++.++++|++|+..+.- .....+|+|+||++|+.+++.|||+ |.++|.+
T Consensus 70 -----------~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~ 138 (621)
T 2q2e_B 70 -----------GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred -----------CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeec
Confidence 0123679999999999999999999887543321 1123479999999999999999999 8999988
Q ss_pred CC---cEEEEEEEEeCC
Q 002153 699 NI---GSTFTFTAVFGN 712 (959)
Q Consensus 699 g~---GttF~~~lp~~~ 712 (959)
+. |++|+|.+|...
T Consensus 139 ~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 139 SPTAPAHYYELMINTST 155 (621)
T ss_dssp SSSSCEEEEECCCCSSS
T ss_pred cCCccceEEEEecchhc
Confidence 74 566666555543
No 32
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.35 E-value=2.1e-11 Score=141.96 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=142.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....++.+++.......
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMD---GFTVCRKLKDDPTTRHI 76 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHhcCcccCCC
Confidence 4799999999999999999999999999999999999988653 589999999886554 33456777764332232
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCCCC--------CCcccC-CCCcchhhhccCCCEE
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK--------GNIRNW-ELPSMSLRHLLLGRKI 889 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~I 889 (959)
.+++++............ ..|...++.||+....+...+..++..... ...... ............+.+|
T Consensus 77 pii~lt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (459)
T 1w25_A 77 PVVLITALDGRGDRIQGL-ESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRV 155 (459)
T ss_dssp CEEEEECSSCHHHHHHHH-HHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTTTCCCCCCSSCSCEE
T ss_pred CEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHhhhhcccccchhhhhhhhhhhcCCCCeE
Confidence 333333322222211221 236779999999999998887665531100 000000 0000000111235689
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 890 LivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++|||+..++..+...|... +.+....++.++.... ...||+++||++||+|||+++|+..
T Consensus 156 livdd~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~~~--~~~~dlil~D~~mp~~dG~~~~~~i 216 (459)
T 1w25_A 156 LIVDDNERQAQRVAAELGVE-HRPVIESDPEKAKISA--GGPVDLVIVNAAAKNFDGLRFTAAL 216 (459)
T ss_dssp EEECSCHHHHHHHHHHHTTT-SEEEEECCHHHHHHHH--HSSCSEEEEETTCSSSCHHHHHHHH
T ss_pred EEECCchhhHHHHHHHHhcc-cceeeccCHHHHhhhc--cCCCCEEEEecCCCCCcHHHHHHHH
Confidence 99999999999998888764 6788888888886432 3579999999999999999998743
No 33
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.34 E-value=9.2e-13 Score=127.65 Aligned_cols=67 Identities=28% Similarity=0.314 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.|||||||++.++..++.+|++.||. +.+|.||.+|++.+. .++||+||+|++||+|||+|+|+..
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-~~~~DlillD~~MP~mdG~el~~~i 79 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-KGDFDFVVTDWNMPGMQGIDLLKNI 79 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 358999999999999999999999996 778999999999995 4789999999999999999999864
No 34
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.30 E-value=5.7e-13 Score=127.05 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=61.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.||||||||+.++..++.+|++.||+|. +|.||++|++.+. .++||+||+|++||+|||+++++..
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-~~~~DlvllDi~mP~~~G~el~~~l 75 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-KGQFDIAIIDVNLDGEPSYPVADIL 75 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-HCCSSEEEECSSSSSCCSHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHH
Confidence 45899999999999999999999999986 7999999999995 5789999999999999999999864
No 35
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.02 E-value=1.9e-10 Score=125.79 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP-~mdG~e~~~~~ 953 (959)
+.+|||||||+.++..++.+|+..||.|. +|.||.+|++.+. ..+||+||||++|| +|||+++|+..
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-~~~~dlvl~D~~MPd~mdG~e~~~~i 228 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-RRTPGLVLADIQLADGSSGIDAVKDI 228 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HCCCSEEEEESCCTTSCCTTTTTHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-hCCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 45899999999999999999999999999 9999999999996 46899999999999 89999999753
No 36
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.02 E-value=8.1e-10 Score=103.88 Aligned_cols=66 Identities=35% Similarity=0.445 Sum_probs=62.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..++..|++.||++..+.|+.+|++.+. ...||+||+|+.||+|||+++++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l 68 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKL 68 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHH
Confidence 58999999999999999999999999999999999999995 5789999999999999999999864
No 37
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.98 E-value=2.1e-09 Score=103.94 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=89.8
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
+++|||||||++..+.+++..|+.+|+. |..|+++.+|++.++. ..+|++++|..++..++ ...++.+|+....
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG---~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQG---IDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCH---HHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhCCCC
Confidence 4579999999999999999999999996 7889999999999876 46999999998876553 4466777765443
Q ss_pred CC-ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 816 ~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.. |.+++.+. ......... ...|...++.||+....|...+.+++
T Consensus 86 ~~ipvI~lTa~-~~~~~~~~~-~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAE-AKREQIIEA-AQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESS-CCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECC-CCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 34 54443332 222222222 23378899999999999999998766
No 38
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=98.93 E-value=2e-09 Score=100.78 Aligned_cols=66 Identities=32% Similarity=0.510 Sum_probs=62.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+...|++.||++.++.|+.+|++.+. ..+||+||+|+.||++||+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~~l 68 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCREV 68 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999985 4789999999999999999999764
No 39
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=98.90 E-value=3e-09 Score=101.95 Aligned_cols=67 Identities=27% Similarity=0.422 Sum_probs=62.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..||.|..+.|+.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l 70 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDGYTLCKRV 70 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999985 4689999999999999999999864
No 40
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=98.86 E-value=3.5e-09 Score=101.11 Aligned_cols=67 Identities=33% Similarity=0.478 Sum_probs=59.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCC----CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~----~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..++.+|+..|+ .+..+.+|.+|++.+.. ...||+||+|+.||+|||+++++..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~l 74 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMI 74 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHH
Confidence 4799999999999999999999997 58899999999998742 1579999999999999999998864
No 41
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=98.86 E-value=3.6e-09 Score=102.41 Aligned_cols=68 Identities=25% Similarity=0.452 Sum_probs=60.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+..+|++.||.+.++.++++|++.+. .+.||+||+|+.||+|||+++++..
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~l 80 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQL 80 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999985 4689999999999999999999764
No 42
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=98.85 E-value=3e-09 Score=107.80 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=62.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+..+|++.||.|.++.|+.+|++.+. .+.||+||+|+.||+|||+++++..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l 73 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLSLIAPL 73 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-TSCCSEEEECSEETTEESHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHHHHHHH
Confidence 3569999999999999999999999999999999999999995 5789999999999999999999864
No 43
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.82 E-value=6.2e-09 Score=107.80 Aligned_cols=70 Identities=44% Similarity=0.625 Sum_probs=63.2
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCC------------CCccEEEEcCCCCCCCHHHHH
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPP------------HQFDACFMDIQMPEMDGYLFC 950 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~~------------~~~DlilmDi~MP~mdG~e~~ 950 (959)
..+.+|||||||+.++..+..+|++.|| .|..+.|+.+|++.+... ..||+||+|+.||+|||++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 4567999999999999999999999999 999999999999988531 379999999999999999999
Q ss_pred HHh
Q 002153 951 FFA 953 (959)
Q Consensus 951 ~~~ 953 (959)
+..
T Consensus 139 ~~l 141 (206)
T 3mm4_A 139 REI 141 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 44
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=98.80 E-value=7.8e-09 Score=97.88 Aligned_cols=68 Identities=29% Similarity=0.359 Sum_probs=60.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..++.+|++.||. +..+.++.+|++.+.....||+||+|+.||+|||+++++..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~l 73 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKV 73 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 458999999999999999999999995 89999999999987533479999999999999999999764
No 45
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.76 E-value=2.3e-08 Score=97.84 Aligned_cols=67 Identities=31% Similarity=0.477 Sum_probs=62.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+..+|++.||.|.++.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l 73 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-LTRPDLIISDVLMPEMDGYALCRWL 73 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999995 5789999999999999999999764
No 46
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=98.72 E-value=1.8e-08 Score=94.12 Aligned_cols=66 Identities=30% Similarity=0.453 Sum_probs=61.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..++.+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l 67 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISGLEVTKWL 67 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998864
No 47
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=98.72 E-value=3e-08 Score=93.60 Aligned_cols=68 Identities=32% Similarity=0.418 Sum_probs=58.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+++||||||++..+..+..+|++.||.+.++.++.+|++.+. ..+||+||+|+.||+++|+++++..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 73 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLKLLEHI 73 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-TCCCSEEEECCC-----CHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 4579999999999999999999999999999999999999995 5789999999999999999999754
No 48
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.72 E-value=2.9e-08 Score=94.55 Aligned_cols=67 Identities=25% Similarity=0.450 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ... |+||+|+.||++||+++++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~-dlvllD~~lp~~~g~~~~~~l 72 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEH-KVVFMDVCMPGVENYQIALRI 72 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTC-SEEEEECCSSTTTTTHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-ccC-CEEEEeCCCCCCcHHHHHHHH
Confidence 4679999999999999999999999999999999999999985 344 999999999999999998754
No 49
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=98.72 E-value=1.7e-08 Score=94.84 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=61.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|++.||.|.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l 69 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPDTSGLALVKQL 69 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999985 4679999999999999999999864
No 50
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=98.72 E-value=2.6e-08 Score=95.33 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=62.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.++||||||++..+..+..+|++.||.+.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 72 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDGVSLIRAL 72 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 4689999999999999999999764
No 51
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=98.71 E-value=3.5e-08 Score=94.71 Aligned_cols=68 Identities=34% Similarity=0.413 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~-mdG~e~~~~~ 953 (959)
+++||||||++..+..+..+|++.||++.++.++.+|++.+.....||+||+|+.||+ ++|+++++..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAI 73 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999854368999999999995 9999999764
No 52
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=98.71 E-value=4.1e-08 Score=92.21 Aligned_cols=67 Identities=22% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l 69 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNL 69 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999985 4679999999999999999998754
No 53
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=98.71 E-value=2.4e-08 Score=93.43 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 69 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-KERPDLVLLDMKIPGMDGIEILKRM 69 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998754
No 54
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.70 E-value=3e-08 Score=94.96 Aligned_cols=66 Identities=29% Similarity=0.310 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l 69 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDGWETLERI 69 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999999864
No 55
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.70 E-value=3.5e-08 Score=91.07 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=61.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 67 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEMPGISGLEVAGEI 67 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999999885 4679999999999999999998754
No 56
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=98.69 E-value=3.5e-08 Score=96.28 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
...+||||||++..+..+..+|+..||.|.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-cCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 3569999999999999999999999999999999999999985 4689999999999999999999764
No 57
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=98.69 E-value=3.1e-08 Score=94.10 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=61.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 69 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEGTELLEKA 69 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSBCSSSBHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCchHHHHHHH
Confidence 58999999999999999999999999999999999999885 4679999999999999999998864
No 58
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=98.67 E-value=4.6e-08 Score=91.25 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l 69 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGLLLAREL 69 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998764
No 59
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=98.67 E-value=2.2e-08 Score=96.61 Aligned_cols=68 Identities=31% Similarity=0.385 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCC-CccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPH-QFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~-~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+|||+||++..+..++.+|++. ||.+. ++.++.+|++.+.. . .||+||+|+.||++||+++++..
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~~dlvilD~~l~~~~g~~~~~~l 82 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA-QPNVDLILLDIEMPVMDGMEFLRHA 82 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-CTTCCEEEECTTSCCCTTCHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc-CCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3568999999999999999999998 88865 89999999998853 5 79999999999999999999753
No 60
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.67 E-value=3.9e-08 Score=92.95 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+++||||||++..+..+..+|++.||.+.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HTCCSEEEEESCBTTBCHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 4689999999999999999999764
No 61
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.66 E-value=4.7e-08 Score=90.72 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+...|+..||.+..+.++.+|++.+. .+.||++++|+.||+++|+++++..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l 66 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGLSLIRRW 66 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHH
Confidence 7999999999999999999999999999999999999885 4679999999999999999998764
No 62
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=98.66 E-value=4e-08 Score=90.99 Aligned_cols=66 Identities=30% Similarity=0.415 Sum_probs=60.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 67 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEVAKTI 67 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999999885 4679999999999999999998754
No 63
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.66 E-value=4.5e-08 Score=93.88 Aligned_cols=66 Identities=35% Similarity=0.454 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l 76 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEI 76 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-HSCCSEEEECTTCCSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 48999999999999999999999999999999999999985 4679999999999999999998764
No 64
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=98.66 E-value=5.8e-08 Score=99.81 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l 70 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIELQEQL 70 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-TTSCEEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999985 5789999999999999999999864
No 65
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=98.65 E-value=5.5e-08 Score=90.55 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=61.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l 68 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLMLTRAL 68 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-cCCCCEEEEeCCCCCCChHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998864
No 66
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3.6e-08 Score=104.89 Aligned_cols=67 Identities=27% Similarity=0.370 Sum_probs=62.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..||+|.++.|+.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~l 89 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-ETRPDAVILDVXMPGMDGFGVLRRL 89 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 469999999999999999999999999999999999999985 4679999999999999999999864
No 67
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=98.65 E-value=7.1e-08 Score=93.73 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhCC------CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~------~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. ...||+||+|+.||++||+++++..
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l 83 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEI 83 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 4899999999999999999999887 89999999999999853 1479999999999999999999864
No 68
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.64 E-value=1.4e-08 Score=115.02 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=61.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+..+|++.||.|..+.||.+|++.+. ...||+||+|+.||+|||+++++..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllDi~mP~~dG~ell~~l 66 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDGVNFIDFI 66 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HBCCSEEEEESEETTEETTTHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999985 4689999999999999999999754
No 69
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.64 E-value=7.6e-08 Score=90.38 Aligned_cols=66 Identities=29% Similarity=0.312 Sum_probs=61.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..|| .+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~l~~~l 71 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLELLKTI 71 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4799999999999999999999999 7999999999999985 4679999999999999999999864
No 70
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=98.64 E-value=3.8e-08 Score=91.33 Aligned_cols=66 Identities=27% Similarity=0.282 Sum_probs=60.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||+ +..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l 69 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEI 69 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEECSCGGGCHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 58999999999999999999999999 568999999999885 4679999999999999999998754
No 71
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.63 E-value=4.2e-08 Score=93.97 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEEcChHHHHHHhCCC-CCccEEEEcCCCC-CCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPP-HQFDACFMDIQMP-EMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~~~~~-~~~DlilmDi~MP-~mdG~e~~~~~ 953 (959)
..+||||||++..+..++.+|++ .||++.++.++.+|++.+. . ..||+||+|+.|| ++||+++++..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~-~~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK-DLDSITLIIMDIAFPVEKEGLEVLSAI 73 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT-TCCCCSEEEECSCSSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh-cCCCCcEEEEeCCCCCCCcHHHHHHHH
Confidence 45899999999999999999999 9999999999999999985 5 7899999999999 99999999764
No 72
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.63 E-value=5.2e-08 Score=93.53 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhCCC-----CCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP-----HQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~~-----~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..|+ .+.++.++.+|++.+. . ..||+||+|+.||+++|+++++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~-~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 82 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLN-ELYAAGRWPSIICIDINMPGINGWELIDLF 82 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH-HHHTSSCCCSEEEEESSCSSSCHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHH-HhhccCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 35899999999999999999999999 9999999999999885 3 679999999999999999999864
No 73
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.63 E-value=5e-08 Score=94.90 Aligned_cols=68 Identities=16% Similarity=0.399 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhC--------CCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLM--------PPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~--------~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|++.|+ .+.++.++.+|++.+. ....||+||+|+.||+++|+++++..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 35899999999999999999999999 8999999999999883 24679999999999999999999864
No 74
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=98.63 E-value=7.7e-08 Score=91.86 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=62.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCC-CCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~-~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+...|+..||.+..+.++.+|++.+. . ..||+||+|+.||+++|+++++..
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~l 82 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLDIV 82 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4579999999999999999999999999999999999999885 5 579999999999999999998865
No 75
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.63 E-value=1.1e-07 Score=90.35 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=62.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhCC------CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~------~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+++||||||++..+..+...|+..|+ .+..+.++.+|++.+.. ...||+||+|+.||+++|+++++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHH
Confidence 46899999999999999999999999 99999999999999963 1679999999999999999998764
No 76
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.62 E-value=4.8e-08 Score=91.89 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..|| .+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5899999999999999999999999 8999999999999985 4679999999999999999998864
No 77
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=98.62 E-value=5.8e-08 Score=92.34 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|++.||++..+.++.+|+..+.....||+||+|+.||+++|+++++..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 74 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTI 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999988543349999999999999999999764
No 78
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.62 E-value=3e-08 Score=113.04 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=62.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++.++..++.+|++.||+|.++.|+.+|++.+. ...||+||+|++||+|||+++|+..
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l 71 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-SEQPDLVICDLRMPQIDGLELIRRI 71 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-HSCCSEEEECCCSSSSCTHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999985 4689999999999999999999864
No 79
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=98.62 E-value=4e-08 Score=94.02 Aligned_cols=66 Identities=23% Similarity=0.391 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~l~~~l 70 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-SNKYDLIFLEIILSDGDGWTLCKKI 70 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HCCCSEEEEESEETTEEHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999985 4679999999999999999999865
No 80
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=98.61 E-value=6.8e-08 Score=91.74 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l 69 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDGIEVCKQL 69 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999885 4679999999999999999998764
No 81
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.59 E-value=4.4e-08 Score=93.51 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=61.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~--mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|++.||++.++.++.+|++.+. ...||+||+|+.||+ ++|+++++..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~~~~l 74 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSGIELLETL 74 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-CTTEEEEEEETTGGGBTTHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEeCcCCCCCccHHHHHHHH
Confidence 358999999999999999999999999999999999999985 578999999999999 9999999764
No 82
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.59 E-value=1.5e-07 Score=91.66 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+...|+..||++.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 73 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQV 73 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999996 4679999999999999999998864
No 83
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.58 E-value=6.4e-08 Score=90.67 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=61.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l 68 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLAWMLPGGSGIQFIKHL 68 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-SSCCSEEEEESEETTEEHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4689999999999999999998764
No 84
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=98.58 E-value=7.5e-08 Score=98.92 Aligned_cols=67 Identities=30% Similarity=0.350 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||.+. .+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-~~~~dlvi~D~~~p~~~g~~~~~~l 80 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRDGIDAASEI 80 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCChHHHHHHH
Confidence 35899999999999999999999999998 8999999999885 4679999999999999999999864
No 85
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.58 E-value=9.8e-08 Score=90.25 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..++.+|+ .||.+.++.++.+|++.+. ..+||+||+|+.||+++|+++++..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 69 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-AHPPDVLISDVNMDGMDGYALCGHF 69 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3589999999999999999999 8999999999999999985 4689999999999999999998754
No 86
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=5.1e-08 Score=93.39 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=61.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvllD~~l~~~~g~~l~~~l 70 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-RSKPQLIILDLKLPDMSGEDVLDWI 70 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-HHCCSEEEECSBCSSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 38999999999999999999999999999999999999885 4679999999999999999998864
No 87
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=98.57 E-value=3.3e-08 Score=95.39 Aligned_cols=69 Identities=13% Similarity=-0.037 Sum_probs=62.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEEcChHHHHHHhCCC-CCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g-~~v~~a~~g~eal~~~~~~-~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+..+|++.| |.+..+.++.+|+..+... ..||+||+|+.||+++|+++++..
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 89 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKL 89 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHH
Confidence 35799999999999999999999999 9999999999998877433 689999999999999999998754
No 88
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.57 E-value=1.1e-07 Score=91.59 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=62.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~--v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..|+. +..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l 73 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-QAKYDLIILDIGLPIANGFEVMSAV 73 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-TCCCSEEEECTTCGGGCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 458999999999999999999999987 899999999999995 5789999999999999999999764
No 89
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.57 E-value=1.7e-07 Score=89.65 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=62.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l 73 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWDTIRAI 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 4679999999999999999998865
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=98.56 E-value=1.2e-07 Score=92.17 Aligned_cols=67 Identities=27% Similarity=0.369 Sum_probs=60.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+. ||.+.++.++.+|++.+....+||+||+|+.||+++|+++++..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l 70 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKA 70 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 46899999999999999999986 99999999999999998543347999999999999999998754
No 91
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=98.56 E-value=5.4e-08 Score=111.37 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=60.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-CCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|++ .|+.|.++.||.+|++.+.....||+||+|+.||+|||+++++..
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l 71 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHA 71 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4899999999999999999998 688999999999999998521479999999999999999999853
No 92
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=98.56 E-value=7.9e-08 Score=91.41 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
+.+|||||||++..+..++..|+.+|++|. +|+++.+|++.++. ..+|++++|..++..++. ..++.+++..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~---el~~~lr~~~-- 79 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSY---PVADILAERN-- 79 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSH---HHHHHHHHTC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHH---HHHHHHHcCC--
Confidence 457999999999999999999999999985 79999999999876 469999999999876543 3455666532
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (959)
.|.+++ ++.+.... ....+...++.||+....|.+.+.++
T Consensus 80 -ipvI~l--Ta~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 80 -VPFIFA--TGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp -CSSCCB--CTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred -CCEEEE--ecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHH
Confidence 243333 33322111 11225567999999999998887543
No 93
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.55 E-value=1.9e-07 Score=89.47 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=61.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~-~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|++.||.+.++.++.+|++.+.. ...||+||+|+.||+++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l 71 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREI 71 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 589999999999999999999999999999999999998852 3689999999999999999998764
No 94
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.55 E-value=9.7e-08 Score=93.72 Aligned_cols=67 Identities=25% Similarity=0.324 Sum_probs=61.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCC--CccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPH--QFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~--~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|++.||.+. ++.++.+|++.+. .. .||+||+|+.||+++|+++++..
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-~~~~~~dliilD~~l~~~~g~~~~~~l 105 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNI 105 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCCCCCEEEEeccCCCccHHHHHHHH
Confidence 45899999999999999999999999998 9999999999985 35 78999999999999999998754
No 95
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=98.55 E-value=1e-07 Score=90.06 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=59.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+.. ||.+. .+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l 70 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-EKRPDILLLDIIMPHLDGLAVLERI 70 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 37999999999999999999987 88876 7999999999985 4679999999999999999998764
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=98.54 E-value=2.4e-07 Score=87.24 Aligned_cols=67 Identities=30% Similarity=0.373 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCC-CccEEEEcCCCCC-CCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPE-MDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~-~~DlilmDi~MP~-mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|+..||.+..+.++.+|++.+. .. .||+||+|+.||+ ++|+++++..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~~dlvi~d~~l~~~~~g~~~~~~l 73 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK-SGAAIDGVVTDIRFCQPPDGWQVARVA 73 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCCCEEEEESCCSSSSCHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-cCCCCCEEEEeeeCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 44 7999999999998 9999998764
No 97
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.54 E-value=2.5e-08 Score=95.05 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=62.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g-~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|++.| |++.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l 81 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEA 81 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHH
Confidence 3589999999999999999999999 99999999999999885 5789999999999999999998754
No 98
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=98.52 E-value=9.4e-08 Score=90.51 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+|++.||.+. ++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~l~~~~g~~~~~~l 68 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETL 68 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-hcCCCEEEEecCCCCCChHHHHHHH
Confidence 799999999999999999999999998 8999999999985 4689999999999999999999764
No 99
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.52 E-value=1.8e-07 Score=89.86 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=62.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhCCC---------CCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP---------HQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~~---------~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|++.|+ .+..+.++.+|++.+... ..||+||+|+.||+++|+++++..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 46899999999999999999999999 899999999999998531 679999999999999999998864
No 100
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=98.52 E-value=1.3e-07 Score=90.05 Aligned_cols=67 Identities=24% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 73 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-LHAPDVIITDIRMPKLGGLEMLDRI 73 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999985 4689999999999999999999854
No 101
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=98.51 E-value=9.8e-08 Score=88.44 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=60.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHhc
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFAG 954 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~~ 954 (959)
+||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.||+++|+++++...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~ 68 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLR 68 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESEETTEEHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 7999999999999999999999999999999999999875 45799999999999999999988653
No 102
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=98.51 E-value=2.7e-07 Score=89.59 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC--CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+..+|+..| +.+.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l 88 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEVLEWI 88 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHHHHHH
Confidence 3589999999999999999999888 88999999999999995 5789999999999999999999864
No 103
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=98.50 E-value=3.2e-07 Score=89.50 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dliild~~l~~~~g~~~~~~l 69 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGLALFRKI 69 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-TTCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 458999999999999999999999999999999999999985 4689999999999999999998764
No 104
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=98.50 E-value=1.5e-07 Score=90.01 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=59.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+.. |.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l 66 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-EEWVQVIICDQRMPGRTGVDFLTEV 66 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-HSCEEEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 37999999999999999999875 99999999999999885 4679999999999999999998764
No 105
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.49 E-value=4.6e-07 Score=88.81 Aligned_cols=120 Identities=11% Similarity=0.149 Sum_probs=88.9
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
...+||||||++..+..++..|+..|+.+. .+.++.+|++.+......+|++++|..+...+ ...+++.+++...
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~---g~~~~~~lr~~~~- 110 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD---GITCLSNIMEFDK- 110 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC---HHHHHHHHHHHCT-
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc---HHHHHHHHHhhCC-
Confidence 347999999999999999999999999998 99999999999877544789999998876533 3446667776532
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
...+++++............ ..|...++.||+....+...+.+++
T Consensus 111 -~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 111 -NARVIMISALGKEQLVKDCL-IKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp -TCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred -CCcEEEEeccCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 23344444333322222222 2367789999999999999988765
No 106
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=98.49 E-value=1.4e-07 Score=89.74 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=59.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|+..| +.+..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-~~~~dlvilD~~lp~~~g~~~~~~l 71 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-EYNPNVVILDIEMPGMTGLEVLAEI 71 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 379999999999999999999887 66788999999999885 4679999999999999999998864
No 107
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.49 E-value=1.2e-07 Score=110.17 Aligned_cols=66 Identities=29% Similarity=0.404 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+..+|+..||.|..+.||.+|++.+. ...||+||+|+.||+|||+++++..
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l 67 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-RDLPDIILLDVMMPGMDGFTVCRKL 67 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999985 4679999999999999999999864
No 108
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=98.49 E-value=1.1e-07 Score=101.27 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=62.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||.|.++.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~~l~~~l 103 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-EDHPDLILLDLGLPDFDGGDVVQRL 103 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEEECCSCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999985 4679999999999999999999864
No 109
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=98.48 E-value=2.8e-07 Score=88.28 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=61.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||++..+.++.+|++.+. ...||+||+|+ ||+++|+++++..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~-~~~~~g~~~~~~l 69 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-REKIDLVFVDV-FEGEESLNLIRRI 69 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-TSCCSEEEEEC-TTTHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-ccCCCEEEEeC-CCCCcHHHHHHHH
Confidence 358999999999999999999999999999999999999996 46899999999 9999999998764
No 110
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=98.48 E-value=2.8e-07 Score=84.38 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-~~~~dlii~d~~~~~~~~~~~~~~l 67 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQSCLLLLQHL 67 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEECSTTCCTHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999985 4679999999999999999998764
No 111
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=98.47 E-value=2.5e-07 Score=96.10 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l 68 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-NEPFDVVILDIMLPVHDGWEILKSM 68 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999999864
No 112
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.47 E-value=2.6e-07 Score=88.17 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=61.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~-~g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+. .||. +..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l 76 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-TVKPDVVMLDLMMVGMDGFSICHRI 76 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-HTCCSEEEEETTCTTSCHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-hcCCCEEEEecccCCCcHHHHHHHH
Confidence 46899999999999999999999 8999 999999999999985 4679999999999999999998865
No 113
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=98.46 E-value=1.4e-06 Score=81.51 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=87.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.......
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~---g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMD---GFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSC---HHHHHHHHHTSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCc---HHHHHHHHHhcccccCC
Confidence 589999999999999999999999999999999999999865 4689999998876543 34466777765433333
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++++........... ...|...++.||+....+...+.+.+
T Consensus 78 pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHh
Confidence 34444332222222222 22367899999999999999888765
No 114
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=98.45 E-value=3e-07 Score=96.15 Aligned_cols=66 Identities=29% Similarity=0.380 Sum_probs=61.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l 73 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-ENRPDAIVLDINMPVLDGVSVVTAL 73 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999885 4679999999999999999998864
No 115
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=98.45 E-value=3.4e-07 Score=88.07 Aligned_cols=66 Identities=24% Similarity=0.363 Sum_probs=59.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHh--hCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~--~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|. ..||.+. .+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-KHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-TSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 479999999999999999997 3688777 8999999999985 4679999999999999999998764
No 116
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.45 E-value=1.4e-07 Score=90.89 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=62.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+||||||++..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l 74 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKISGMDLFNSL 74 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 458999999999999999999999999999999999999985 4679999999999999999999864
No 117
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.45 E-value=3.3e-07 Score=87.71 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEcChHHHHHHhCC-----CCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-----PHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~-----~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|++.|+ .+..+.++.+|++.+.. ...||+||+|+.||+++|+++++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHH
Confidence 35899999999999999999999998 99999999999999853 1579999999999999999999865
No 118
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=98.44 E-value=2.5e-07 Score=87.41 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.++||||||++..+..+..+|+..|+.+.++.++.+|++.+. .. ||+||+|+.||+++|+++++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~-~dlvi~D~~l~~~~g~~~~~~l 68 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-NK-QDIIILDLMMPDMDGIEVIRHL 68 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-CT-TEEEEEECCTTTTHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-cC-CCEEEEeCCCCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999885 45 9999999999999999999764
No 119
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.5e-07 Score=89.91 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=60.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCE--EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~--v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+.+||||||++..+..+..+|++.|+. +..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l 83 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-AHLPDVALLDYRMPGMDGAQVAAAV 83 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999955 558999999999985 4679999999999999999999864
No 120
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.43 E-value=2e-07 Score=89.11 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=54.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.++||||||++..+..+..+|+.. |.+.++.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l 68 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKL 68 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-HHCCSEEEEETTC------CHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 358999999999999999999988 99999999999999985 4689999999999999999998764
No 121
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=98.42 E-value=2.5e-07 Score=95.69 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=59.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC-CEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g-~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|+..| |.+ ..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~l 73 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKL 73 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEEETTSTTSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 489999999999999999999874 887 68999999999885 4679999999999999999999864
No 122
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.41 E-value=2.4e-07 Score=105.55 Aligned_cols=65 Identities=26% Similarity=0.483 Sum_probs=60.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+|+..||.|..+.|+.+|++.+. ...||+||+|+.||+|||+++++..
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~ell~~l 66 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLEILKWI 66 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999985 4679999999999999999999764
No 123
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.41 E-value=1.4e-06 Score=92.54 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred cEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhc
Q 002153 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780 (959)
Q Consensus 701 GttF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~ 780 (959)
||+|++.+|+.....+. .......+||+|||++..+..++..|+..|+.|..+.++.+|++.+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---------------~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---------------ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE 65 (250)
T ss_dssp ----------------------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCccccccceeeccCCC---------------CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh
Confidence 89999999875432211 011234799999999999999999999999999999999999998865
Q ss_pred CCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 002153 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (959)
Q Consensus 781 ~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (959)
..+|++++|..++..+ ....++.+++... ..|.+ +++........... -..|...++.||+....+...+..
T Consensus 66 --~~~dlvllD~~lp~~~---g~~~~~~lr~~~~-~~~ii-~lt~~~~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 66 --TRPDAVILDVXMPGMD---GFGVLRRLRADGI-DAPAL-FLTARDSLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp --HCCSEEEEESCCSSSC---HHHHHHHHHHTTC-CCCEE-EEECSTTHHHHHHH-HTSTTCEEEESSCCHHHHHHHHHH
T ss_pred --CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CCCEE-EEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHH
Confidence 3589999998876543 3446677776532 12433 33332222222222 223778999999999999999988
Q ss_pred Hhc
Q 002153 861 AMG 863 (959)
Q Consensus 861 ~~~ 863 (959)
++.
T Consensus 138 ~~~ 140 (250)
T 3r0j_A 138 ILR 140 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 124
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.41 E-value=2.7e-07 Score=85.89 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=61.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP-~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||++..+.++.+|++.+. ...||+||+|+.|| +++|+++++..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~d~~~~~~~~g~~~~~~l 72 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQNGYLICGKL 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-HHCCSEEEEESBCGGGCBHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-hcCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999985 46799999999999 99999998865
No 125
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=98.41 E-value=3.3e-07 Score=96.61 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=61.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~~~~~l 71 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNGIDVCRVL 71 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999999864
No 126
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=98.40 E-value=3.7e-07 Score=95.26 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~~~~~l 70 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSGTDVCKQL 70 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999885 4679999999999999999998864
No 127
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=98.39 E-value=4.2e-07 Score=86.50 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP-~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+..||.+. ++.++.+|++.+. ...||+||+|+.|| +++|+++++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~~~~~~~g~~~~~~l 77 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-DLRPDIALVDIMLCGALDGVETAARL 77 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCCSSSCHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999 5999999999985 46799999999999 89999998764
No 128
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=98.38 E-value=6.4e-07 Score=85.23 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=60.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC-----CCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-----EMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP-----~mdG~e~~~~~ 953 (959)
.+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||+||+|+.|| +++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l 74 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGINNGNEGLFWLHEI 74 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-HSCEEEEEEETTTTC-----CCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-cCCCCEEEEeCCcCCCCCCCccHHHHHHHH
Confidence 58999999999999999999999999999999999999985 46799999999999 99999998754
No 129
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.38 E-value=2.7e-06 Score=80.69 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=86.8
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhc-CC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GC 814 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~-~~ 814 (959)
+.+.+||+|||++..+..++..|+.+|+.|..+.++.+|+..+... . |++++|..++..++ ...++.+++. ..
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g---~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVEN---YQIALRIHEKFTK 78 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTT---THHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcH---HHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999887543 3 99999998865443 2345555532 11
Q ss_pred C--CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 815 G--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
. ..|.+++++............ ..|...++.||+....+...+.+++.
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCM-SFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ccCCCceEEEEeCCCCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 1 124455454433322222222 23678999999999999999988774
No 130
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=98.37 E-value=6.7e-07 Score=86.94 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=61.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+. .||.+. .+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l 73 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEATRHI 73 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 35899999999999999999998 799998 8999999999985 4679999999999999999998764
No 131
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=98.37 E-value=3.3e-06 Score=92.08 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=89.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~ 815 (959)
+.++|+|||++.++.+++..|+..|+.|. .+.++.+|++.+... .+|++++|..|+ .+++... ++.++...
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~---~~~ir~~~-- 232 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDA---VKDILGRM-- 232 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTT---THHHHHHT--
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHH---HHHHHhcC--
Confidence 46899999999999999999999999999 999999999998763 589999999998 5665444 34555543
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..|.+++.+. + ..... ....|...++.||+....|...+...+..
T Consensus 233 ~~piI~lT~~--~-~~~~~-~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 233 DVPVIFITAF--P-ERLLT-GERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp TCCEEEEESC--G-GGGCC-SSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--H-HHHHH-HHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 2355554433 2 22222 23447889999999999999999988854
No 132
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=98.36 E-value=7.3e-07 Score=85.42 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=59.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+||||||++..+..+...|+.. |+.+ ..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-HNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHH
Confidence 358999999999999999999986 8884 58999999999885 4679999999999999999999865
No 133
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=98.33 E-value=2.2e-07 Score=104.03 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHh-hCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~-~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|. ..||.|..+.||.+|++.+. ...||+||+|+.||+|||+++|+..
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~G~~~~~~l 85 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-QIKPTVILQDLVMPGVDGLTLLAAY 85 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 379999999999999999996 46999999999999999985 4679999999999999999999865
No 134
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.33 E-value=2.3e-07 Score=105.27 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=64.2
Q ss_pred EecHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002153 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (959)
Q Consensus 547 ~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (959)
.+|...+.+++.|+++||+++ ..+.|.|.+..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------- 62 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------- 62 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT-----------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc-----------------------------------------------
Confidence 368889999999999999985 34566665420
Q ss_pred CCCCccCceeEEEEEEEcCCCCChhhHhh--------ccCCccccCC----CCcCcCCCccchHHHHHHHHHHcC
Q 002153 627 FKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP----SISRTHGGTGIGLSISKYLVGRMK 689 (959)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~~~----s~s~~~~GtGLGLsI~k~LVe~mg 689 (959)
+ -.|+|.|+|+|||++..++ +|.+|+..+. ......|+.|+||++|+.+++.+.
T Consensus 63 ------~---~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 63 ------D---GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp ------T---SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred ------C---CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 0 0489999999999999888 8988876532 111134679999999999997653
No 135
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=98.33 E-value=2.9e-06 Score=79.90 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=87.6
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
.+++||+|||++..+..++..|++.|+. +..+.++.+|+..+... ..+|++++|..++..+ ....++.+++....
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~---g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMN---GLDLVKKVRSDSRF 79 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSC---HHHHHHHHHTSTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCC
Confidence 4578999999999999999999999995 88999999999887653 3579999998876543 34466777764332
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
....+++++........... ...|...++.||+....+...+..+++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCeEEEEeCCCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 23334444333222221122 2236778999999999999999888753
No 136
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=98.31 E-value=7.9e-07 Score=87.99 Aligned_cols=66 Identities=24% Similarity=0.262 Sum_probs=58.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g-~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|++.| +. +.++.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~l~~~l 93 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-ELKPDVITMDIEMPNLNGIEALKLI 93 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 589999999999999999999885 33 447999999999985 4679999999999999999999754
No 137
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=98.31 E-value=2.8e-06 Score=81.79 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=83.3
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC--
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG-- 813 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~-- 813 (959)
.++++||+|||++..+..++..|++.|+.|..+.++.+|++.+.. ..+|++++|..++..++ ...++.++...
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g---~~~~~~lr~~~~~ 86 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNG---LDMLKQLRVMQAS 86 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCH---HHHHHHHHHHHHT
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchhc
Confidence 467899999999999999999999999999999999999998865 46899999998876543 33455555321
Q ss_pred CCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 814 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
......+++++........... ...|...++.||+....+...+.+...
T Consensus 87 ~~~~~pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 87 GMRYTPVVVLSADVTPEAIRAC-EQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp TCCCCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cCCCCeEEEEeCCCCHHHHHHH-HHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 1122234444332222222222 223678899999999999999987653
No 138
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=98.29 E-value=4e-06 Score=79.92 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=88.1
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++......
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPGID---GYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHSGGGTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHcCCCcCC
Confidence 4689999999999999999999999999999999999998875 4589999999876543 3445667776432223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++........... ...|...++.||+....+...+.+++..
T Consensus 79 ~pii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAG-FEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECTTCHHHHHHH-HHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 233333332222211111 1236778999999999999999988854
No 139
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=98.29 E-value=4.3e-06 Score=79.61 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=89.9
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQD---GVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCcccCC
Confidence 46899999999999999999999999999999999999998764 589999998876543 3446677776332223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++...............|...++.||+....+...+.+++..
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 44444433322222220223347789999999999999999988853
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.29 E-value=1.6e-06 Score=96.64 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCc
Q 002153 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (959)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (959)
++.+++.||++||+++. ...|.|.+.. .
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~------------------------------------------------- 51 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--G------------------------------------------------- 51 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--C-------------------------------------------------
Confidence 67899999999999997 4566555421 0
Q ss_pred cCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC------cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 002153 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (959)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (959)
....|+|.|+|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.+.|....
T Consensus 52 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 52 ---GAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp ---GTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred ---CceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 012589999999999999999999998754221 12457799999877544 36889888644
No 141
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=98.29 E-value=5.4e-06 Score=77.51 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=87.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|++.|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTS---GLALVKQLRALPMEKT 77 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHSCCSSC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhhccCC
Confidence 35899999999999999999999999999999999999998764 489999998876433 3456777777533333
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++....... .. ....|...++.||+....+.+++.....
T Consensus 78 ~~ii~~s~~~~~~~-~~-~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDL-GK-EACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTC-CH-HHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhH-HH-HHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 44444443333222 21 1222567899999999999999987664
No 142
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=98.28 E-value=5.1e-07 Score=94.40 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC-CEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g-~~v-~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+|+..| |.+ ..+.++.+|++.+. ...||+||+|+.||++||+++++..
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l 69 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-AARPDVAVLDVRLPDGNGIELCRDL 69 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSEETTEEHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 79999999999999999999887 885 47999999999885 4679999999999999999999854
No 143
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=98.26 E-value=1.9e-07 Score=86.67 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=60.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+|||+||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l 69 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQI 69 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-SCCCSCEEECSCSSHHHHCSTHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEeeecCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999985 4679999999999999999887754
No 144
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.26 E-value=2.9e-06 Score=80.99 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=89.5
Q ss_pred CceEEEeCCchhHHHHHHHHHHH-cCCEEEEEcCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~-~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+. .|+.|..+.++.+|++.+... ..+|++++|..+. ..+ ....++.+++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~---g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKE---GLEVLSAIRNNSRT 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHH---HHHHHHHHHHSGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCc---HHHHHHHHHhCccc
Confidence 46899999999999999999999 999999999999999887653 5789999998775 432 34466777763222
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
....+++++............ ..|...++.||+....+...+..++...
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAAL-KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHH-HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 233444444333222222222 2367899999999999999999988643
No 145
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=98.24 E-value=4.2e-07 Score=94.87 Aligned_cols=67 Identities=9% Similarity=-0.088 Sum_probs=56.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-CCCEEEE-EcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~-~g~~v~~-a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..++.+|++ .||.+.. +.++.+++..+.....||+||+|+.||+|||+++++..
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~l 76 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSF 76 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHH
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4899999999999999999994 6898865 46777777653235689999999999999999999754
No 146
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.24 E-value=6.5e-06 Score=80.23 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=89.6
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
++.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..+...+ ...++..+++.....
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMD---GYALCRWLKGQPDLR 80 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSC---HHHHHHHHHHSTTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhCCCcC
Confidence 35789999999999999999999999999999999999999865 4689999998876543 344667777654323
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...+++++........... ...|...++.||+....+...+..++..
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRS-LECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TSCEEEEECCCSHHHHHHH-HHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3334444332222222222 2236778999999999999999888853
No 147
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=98.24 E-value=1.5e-05 Score=76.05 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=86.6
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+.+||+|||++..+..++..|+..|+.|..+.++.+|+..+..+ ..+|++++|..++.. ......++.+++..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~--~~g~~~~~~l~~~~--- 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG--MDGVQTALAIQQIS--- 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS--CCHHHHHHHHHHHC---
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC--CCHHHHHHHHHhCC---
Confidence 457999999999999999999999999999999999999988653 568999999887531 22334566666641
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2234444333332222222 223677899999999999999988775
No 148
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.24 E-value=2.6e-06 Score=95.77 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCc
Q 002153 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (959)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (959)
++.+++.||++||+++. .+.|.|.+.. .
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~------------------------------------------------- 61 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--Y------------------------------------------------- 61 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--C-------------------------------------------------
Confidence 57899999999999986 4556555420 0
Q ss_pred cCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 002153 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (959)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (959)
....|+|.|+|+|||+++++++|++|++.+.... ...|-.|+||+.+..+ . ++.+.|....
T Consensus 62 ---~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~~ 128 (365)
T 1h7s_A 62 ---GVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHAS 128 (365)
T ss_dssp ---GTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECTT
T ss_pred ---CcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccCC
Confidence 0135899999999999999999999997643221 1123349999876654 3 7888887643
No 149
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=98.23 E-value=1.7e-06 Score=84.09 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=54.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~-~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+...|+.. |+ .+..+.++.+|++.+.....||+||+|+.||+++|+++++..
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l 72 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRL 72 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHH
Confidence 48999999999999999999988 88 788999999999998532679999999999999999998764
No 150
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=98.23 E-value=6.9e-06 Score=77.92 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=85.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCC-EEEEEcCHHHHHHHHhc---CCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~-~v~~~~~~~~al~~l~~---~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
.+||+|||++..+..++..|+..|+ .|..+.++.+|++.+.. ....+|++++|..++..++ ...++.+++...
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G---~~~~~~lr~~~~ 79 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDG---LLSTKMIRRDLG 79 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCH---HHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCh---HHHHHHHHhhcC
Confidence 5899999999999999999999997 58899999999988765 2246899999998875442 345666765322
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
. ...+++++............ ..|...++.||+....+...+.+.+.
T Consensus 80 ~-~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 Y-TSPIVALTAFADDSNIKECL-ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp C-CSCEEEEESCCSHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred C-CCCEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2 22344443322222222222 23678999999999999999988764
No 151
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.23 E-value=1.7e-05 Score=75.50 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
...+||+|||++..+..++..|+..|+.|..+.+..+|+..+... .+|++++|..+...+ ....++.+++.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMD---GWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSC---HHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 357899999999999999999999999999999999999998764 489999998775432 344667777632222
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+..++.
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TEEEEEEECTTCCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3344444333222222222 223667899999999999999988775
No 152
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.23 E-value=5.4e-06 Score=79.23 Aligned_cols=125 Identities=12% Similarity=0.172 Sum_probs=91.4
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhc---CCCcccEEEEeccccccCccchHHHHHHHHh
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRK 811 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~---~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 811 (959)
+..+||||||++..+..++..|+..|+ .|..+.++.+|++.+.. ....+|++++|..+...+ ...+++.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGIN---GWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSC---HHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 357899999999999999999999999 99999999999998875 236799999998876543 3445667776
Q ss_pred cC--CCCCceEEEEecCCCcccccccCCCCC-CCccccCCCChHHHHHHHHHHhcCC
Q 002153 812 LG--CGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 812 ~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
.. ......++++............... | ...++.||+....+..++.+.....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEAS-DWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHC-SSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhc-CCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 32 2223444444443333222222233 4 7889999999999999999887643
No 153
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.23 E-value=3.6e-06 Score=93.58 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCc
Q 002153 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (959)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (959)
++.+++.||+.||+++. .+.|.|.+. +.
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~------------------------------------------------- 55 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EG------------------------------------------------- 55 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999995 456666552 10
Q ss_pred cCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 002153 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (959)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (959)
....|+|.|+|+|||+++++++|+||++.+.... ...|-.|.||+-+..+. ++.+.|....
T Consensus 56 ---~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 56 ---GLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp ---GTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred ---CEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 0135899999999999999999999998754321 12344588887554442 6888887643
No 154
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=98.22 E-value=1.6e-06 Score=89.91 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+...|+..| .+..+.++.+|++.+ ..||+||+|+.||++||+++++..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~l 65 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMI 65 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 79999999999999999999999 999999999999976 469999999999999999999764
No 155
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.22 E-value=8.3e-06 Score=78.99 Aligned_cols=122 Identities=11% Similarity=0.170 Sum_probs=89.4
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhc-------CCCcccEEEEeccccccCccchHHHHHH
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVSTLFVNN 808 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~-------~~~~~~~ilid~~~~~~~~~~~~~~~~~ 808 (959)
..+||+|||++..+..++..|++.|+ .|..+.++.+|++.+.. ....+|++++|..+...+ ....++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~---g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT---GIDILKL 80 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB---HHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCc---HHHHHHH
Confidence 46899999999999999999999999 89999999999999862 346799999998876533 3456777
Q ss_pred HHhcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 809 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 809 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+++........++++............. ..|...++.||+....+...+.++..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCY-DLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7774333333344444333322222222 23678899999999999999988764
No 156
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.22 E-value=7e-06 Score=77.57 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=89.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhcCC-----CcccEEEEeccccccCccchHHHHHHHH
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS-----KIINMILVEQEVWEKDTSVSTLFVNNLR 810 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~~~-----~~~~~ilid~~~~~~~~~~~~~~~~~~~ 810 (959)
+.+||+|||++..+..++..|+..|+ .|..++++.+|+..+.... ..+|++++|..+...+ ....++.++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---GREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC---HHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCccc---HHHHHHHHH
Confidence 57899999999999999999999999 9999999999999987632 6799999998876433 345667777
Q ss_pred hcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 811 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+........+++++............ ..|...++.||+....+...+.+++.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 65322233344444333322222222 23678899999999999999888764
No 157
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=98.21 E-value=9.1e-06 Score=75.50 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=85.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..++..|++.|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~---g~~~~~~lr~~~--~~~ 75 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKD---GVEVCREVRKKY--DMP 75 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTH---HHHHHHHHHTTC--CSC
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 589999999999999999999999999999999999998865 4689999999876543 334566676532 124
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+ +++........... ...|...++.||+....+...+.+.+.
T Consensus 76 ii-~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 76 II-MLTAKDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EE-EEEESSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EE-EEECCCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 33 33332222211111 223678999999999999998887653
No 158
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.21 E-value=1e-05 Score=76.03 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=88.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.+||+|||++..+..++..|++.|+.|..+.++.+|+..+... .+|++++|..+...+ ....++.+++......
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLD---GLDVIRSLRQNKVANQ 80 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBC---HHHHHHHHHTTTCSSC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcCccCC
Confidence 57999999999999999999999999999999999999988653 589999998876533 3446677776543233
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+.++++... ........ ...|...++.||+....+...+.+....
T Consensus 81 ~~ii~~~~~-~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 81 PKILVVSGL-DKAKLQQA-VTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CEEEEECCS-CSHHHHHH-HHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CeEEEEeCC-ChHHHHHH-HHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 555554332 22222122 2236778999999999999999887754
No 159
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=98.20 E-value=2.7e-06 Score=80.84 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
..+.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+|| ||+++|+++++..
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----~~~~~g~~~~~~l 80 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRI 80 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HSCCSEEE----ECSTTHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-cCCCCEEE----EcCccHHHHHHHH
Confidence 44679999999999999999999999999999999999999985 46799999 9999999998864
No 160
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=98.20 E-value=1.5e-06 Score=97.52 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=59.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 887 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 887 ~~ILivdDn~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
.+||||||++..+..+..+|++. ||+ +..+.|+.+|++.+. ...||+|++|+.||+|||+++++..
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-~~~pDlVllDi~mp~~dGlell~~l 71 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-KFNPDVLTLDVEMPRMDGLDFLEKL 71 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEECCCSSSCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHH
Confidence 48999999999999999999986 898 569999999999985 4679999999999999999998864
No 161
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.20 E-value=2.2e-05 Score=73.85 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=87.1
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+ .|+.+..+.++.+|++.+... .+|++++|..+...+ ...+++.+++......
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMD---GYALCGHFRSEPTLKH 77 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCccCC
Confidence 3689999999999999999999 999999999999999998764 589999998875433 3446677777543333
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++....... ......|...++.||+....+...+.+++..
T Consensus 78 ~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 33444443322222 2233346778999999999999999988854
No 162
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=98.18 E-value=8.8e-06 Score=76.36 Aligned_cols=120 Identities=12% Similarity=0.247 Sum_probs=83.8
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+.+||+|||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..+...+ ....++.+++..+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMN---GLKLLEHIRNRGD- 78 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC--------CHHHHHHHHHTTC-
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCC---HHHHHHHHHhcCC-
Confidence 356899999999999999999999999999999999999998854 4589999998876533 3345667776432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~~~ 863 (959)
...+++++............ ..|...++.||+ ....+...+..++.
T Consensus 79 -~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 79 -QTPVLVISATENMADIAKAL-RLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp -CCCEEEEECCCCHHHHHHHH-HHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred -CCCEEEEEcCCCHHHHHHHH-HcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 33344444333322212222 236778999999 88999999988775
No 163
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=98.16 E-value=9.2e-07 Score=90.03 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=56.3
Q ss_pred cCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 884 ~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+.+.+||||||++..+..+...|+..||.+..+.++.+|+ ...||+||+|+.||+|||+ +++..
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----~~~~dlvl~D~~mp~~~g~-l~~~~ 73 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNRHHDE-IAALL 73 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----SSCCSEEEEECCSSTHHHH-HHHHH
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----CCCCCEEEEeCCCCccchH-HHHHH
Confidence 3456999999999999999999999999999999988765 2479999999999999998 77654
No 164
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=98.16 E-value=1.4e-05 Score=75.61 Aligned_cols=122 Identities=11% Similarity=0.175 Sum_probs=89.4
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.+..+|+..+... ..+|++++|..+...+ ....++.+++.. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPES---GLDLIRTIRASE-RAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHTST-TTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCC---HHHHHHHHHhcC-CCC
Confidence 46899999999999999999999999999999999999888663 3489999998876543 344667777653 223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
..+++++........... ...|...++.||+....+...++++....
T Consensus 82 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDV-MHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp CEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCEEEEeCCCChHHHHHH-HhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 344444433332222222 22367899999999999999999888644
No 165
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.15 E-value=2.3e-05 Score=72.58 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=86.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.++|+|||++..+..++..|++.|++|..+.++.+|+..+... .+|++++|..+. ..+ ....++.+++......
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~---g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQN---GYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCB---HHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCC---HHHHHHHHhcCccccC
Confidence 5899999999999999999999999999999999999988764 489999998775 322 3446677777532233
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..++++ ........... ...|...++.||+....+...+.+++.
T Consensus 81 ~~ii~~-~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 333334 33222222222 233778999999999999999988764
No 166
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.13 E-value=1.5e-05 Score=74.47 Aligned_cols=119 Identities=15% Similarity=0.267 Sum_probs=84.9
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..+++++||++..+..++..|+..|+ .+..+.++.+++..+.. ..+|++++|..++..+ ....++.+++.....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMD---GLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSC---HHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 46899999999999999999999999 79999999999988865 4589999998876543 344666777643222
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
...+++++........... ...|...++.||+....+...+.+++
T Consensus 79 ~~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp TCCEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHH-HHhCcCceeecCCCHHHHHHHHHHHH
Confidence 3334444333222222222 22367789999999999998887765
No 167
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.12 E-value=1.3e-05 Score=76.46 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=89.3
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+++..+|+..+......+|++++|..+...+ ...+++.+++..+ ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~--~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS---GMDILREIKKITP--HM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC---HHHHHHHHHHHCT--TC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc---HHHHHHHHHHhCC--CC
Confidence 589999999999999999999999999999999999999886567899999998876433 3445666766431 33
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++............ ..|...++.||+....+..++..++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAM-KEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 444444333322222222 23678899999999999999988775
No 168
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=98.12 E-value=2e-05 Score=73.01 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=83.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.+..+.++.+|+..+... .+|++++|..+...+ ....++.+++.......
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHcCccccCC
Confidence 4799999999999999999999999999999999999887653 589999998876433 34466777764322233
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... ...|...++.||+....+...+..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERI-REGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHH-HHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33333322222111111 123677899999999999999887764
No 169
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.12 E-value=9.9e-06 Score=74.04 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002153 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495 (959)
Q Consensus 427 ~~~ae~a~~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~ 495 (959)
..+.+.....+.+|++.+|||+|||+++|.++++.+.+ ...+..+.+..++.+|..++++++++
T Consensus 50 ~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 50 RRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455567789999999999999999999998753 23445689999999999999999987
No 170
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.12 E-value=3.1e-05 Score=73.62 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=87.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ...+++.+++.......
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMD---GWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCC
Confidence 5899999999999999999999999999999999999988753 589999998876543 34466777765332233
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++++..... .........+...++.||+....+...+..++..
T Consensus 79 ~ii~ls~~~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKPLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSCCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 33334332221 1111223335678999999999999999888753
No 171
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=98.11 E-value=1.3e-05 Score=85.54 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=88.4
Q ss_pred ccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+.+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..++ ...++.+++...
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G---~~l~~~ir~~~~ 200 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDG---YRLTQRIRQLGL 200 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCC---HHHHHHHHHHHC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCH---HHHHHHHHhcCC
Confidence 34578999999999999999999999999999999999999998764 5899999998876543 335556665432
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..|.++ ++........... ...|...++.||+....+...+.+.+.
T Consensus 201 -~~piI~-lt~~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 201 -TLPVIG-VTANALAEEKQRC-LESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp -CSCEEE-EESSTTSHHHHHH-HHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEE-EECCCCHHHHHHH-HHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 124333 3332222222222 223778999999999999998877653
No 172
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.11 E-value=2.8e-06 Score=104.77 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=60.7
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC----CCHHHHHHHh
Q 002153 888 KILIVDDNN-VN-------LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE----MDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~-~~-------~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~----mdG~e~~~~~ 953 (959)
+||||||++ .. ++.++..|++.||+|..|.||++|++.+.....||+||+|++||+ |||+++|+-.
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 799999999 88 999999999999999999999999999964335999999999999 9999999853
No 173
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.10 E-value=2.2e-05 Score=74.60 Aligned_cols=123 Identities=6% Similarity=0.146 Sum_probs=89.0
Q ss_pred CCceEEEeCCchhHHHHHHHHHHH-cCCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~-~G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+||+|||++..+..++..|+. .|+. +..+.++.+|+..+... .+|++++|..+...+ ....++.+++...
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMD---GFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSC---HHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCc---HHHHHHHHHhCcc
Confidence 357899999999999999999999 9999 99999999999998764 489999998775432 3446677776432
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
.....+++++........... ...|...++.||+....+...+..++...
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRI-VALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEeCCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 233444444433332221222 22367889999999999999999888543
No 174
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.10 E-value=1.5e-05 Score=76.21 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhcCC--------CcccEEEEeccccccCccchHHHH
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS--------KIINMILVEQEVWEKDTSVSTLFV 806 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~~~--------~~~~~ilid~~~~~~~~~~~~~~~ 806 (959)
.+.+||+|||++..+..++..|++.|+ .|..++++.+|+..+.... ..+|++++|..+...+ ....+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD---GREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC---HHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC---HHHHH
Confidence 457899999999999999999999999 8999999999999987632 6789999998875433 33456
Q ss_pred HHHHhcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 807 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 807 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+.+++........+++++............ ..|...++.||+....+...+.+++.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICY-SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 677764321233344444333222222222 23678899999999999999888764
No 175
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.10 E-value=2.2e-05 Score=74.77 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=89.4
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhcC----CCcccEEEEeccccccCccchHHHHHHHHh
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG----SKIINMILVEQEVWEKDTSVSTLFVNNLRK 811 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~~----~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 811 (959)
..+||+|||++..+..++..|++.|+ .|..+.++.+|+..+... ...+|++++|..+...+ ....++.+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~---g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN---GIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC---HHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC---HHHHHHHHHc
Confidence 46899999999999999999999998 999999999999998752 26789999998776433 3445667766
Q ss_pred cCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 812 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
........+++++........... ...|...++.||+....+..+++...+.+
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CccccCCcEEEEeCCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 432123344444433332222222 23377899999999999999988766544
No 176
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=98.09 E-value=5.8e-06 Score=83.37 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~-- 78 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDS---GLSLIAPLCDLQP-- 78 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEE---SHHHHHHHHHHCT--
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCcc---HHHHHHHHHhcCC--
Confidence 45799999999999999999999999999999999999999865 4689999999886543 3345666666432
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
...+++++........... ...|...++.||+....+...+..++
T Consensus 79 ~~~ii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 79 DARILVLTGYASIATAVQA-VKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp TCEEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CCCEEEEeCCCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 3334444333222222222 22367789999999999988876554
No 177
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.07 E-value=3.8e-05 Score=73.14 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=84.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC---C
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---C 814 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~---~ 814 (959)
..+||+|||++..+..++..|+..|+.+..+.++.+|+..+.. ..+|++++|..++..++ ...++.+++.. .
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g---~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDG---LEAVSEIRNYERTHN 84 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCH---HHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcH---HHHHHHHHhhhhhcC
Confidence 3589999999999999999999999999999999999998875 35899999988765442 34555665431 1
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.....+++++........ ...|...++.||+....+...+..++..
T Consensus 85 ~~~~~ii~~s~~~~~~~~----~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 85 TKRASIIAITADTIDDDR----PGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CCCCCCEEEESSCCSCCC----CCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCceEEEEEeCccchhHH----HhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 112223333322211111 1336778999999999999999888753
No 178
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.06 E-value=2.4e-05 Score=74.81 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=89.3
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCE--EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+||+|||++..+..++..|+..|+. +..+.++.+|+..+.. ..+|++++|..+...+ ....+..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIAN---GFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGC---HHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhccc
Confidence 4579999999999999999999999998 8899999999998865 4689999998876443 3446677776433
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHhcC
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGV 864 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~~~~ 864 (959)
.....+++++............ ..|...++.||+ ....+...+..++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCM-AAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHH-HTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 3333444444433322222222 236789999999 999999999888753
No 179
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.06 E-value=3.6e-06 Score=96.20 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHHHhcc----CCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002153 549 DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (959)
+...+..++.+|+.||++|+ +.|.|.|++....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 34678999999999999998 3677877764310
Q ss_pred CCCCCCccCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002153 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (959)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GttF 704 (959)
...+.++|.|+|+|+|+. + ..++.|+||.|++.+++.+ .+.+. +.|+++
T Consensus 331 ---------~~~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v 379 (399)
T 3ke6_A 331 ---------DGNVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTA 379 (399)
T ss_dssp ---------TSEEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEE
T ss_pred ---------CCEEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEE
Confidence 124789999999999976 0 1246799999999988754 45554 579999
Q ss_pred EEEEEeCC
Q 002153 705 TFTAVFGN 712 (959)
Q Consensus 705 ~~~lp~~~ 712 (959)
++++|+..
T Consensus 380 ~~~~~~~~ 387 (399)
T 3ke6_A 380 TLTHRLSR 387 (399)
T ss_dssp EEEEECEE
T ss_pred EEEEEcCC
Confidence 99998853
No 180
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=98.06 E-value=2.5e-05 Score=83.58 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=88.9
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
+..+||+|||++..+..+...|+..|+.|..+.++.+|++.+... ..+|++++|..++..+ ....++.+++.....
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~d---G~~l~~~lr~~~~~~ 198 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEID---GISLVRMLRERYSKQ 198 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHHHCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCC---HHHHHHHHHhccCCC
Confidence 457999999999999999999999999999999999999998653 3489999999887654 344667777654333
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... -..|...++.||+....+...+.+.+.
T Consensus 199 ~~~ii~~s~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 199 QLAIIGISVSDKRGLSARY-LKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp TSEEEEEECSSSSSHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEccCCHHHHHHH-HhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 3333333322222221111 223778999999999999988887774
No 181
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.04 E-value=1.8e-05 Score=75.95 Aligned_cols=122 Identities=13% Similarity=0.172 Sum_probs=89.1
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+.+||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..+...+ ...+++.+++.....
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKIS---GMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCC---HHHHHHHHHcCcccC
Confidence 467999999999999999999999999999999999999988764 589999998775433 345667777632223
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...+++++........... ...|...++.||+....+...+..++..
T Consensus 82 ~~pii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp TSCEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3344444433332221111 1236778999999999999999888753
No 182
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=98.04 E-value=3.4e-05 Score=74.51 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=87.9
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC--EEEEEcCHHHHHHHHhcC-----CCcccEEEEeccccccCccchHHHHHHHH
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 810 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~--~v~~~~~~~~al~~l~~~-----~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 810 (959)
..+||+|||++..+..++..|+..|+ .|..+.++.+|+..+... ...+|++++|..++..+ ....++.++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---GREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC---HHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc---HHHHHHHHH
Confidence 46899999999999999999999887 899999999999998753 24689999998876543 344667777
Q ss_pred hcCCCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 811 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+........+++++............ ..|...++.||+....+...+..+..
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 65322233344443333222222222 23677899999999999998887764
No 183
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=98.03 E-value=2.4e-05 Score=75.81 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
...+||||||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..+...+ ...++..+++...
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~-- 85 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMD---GPTLLARIHQQYP-- 85 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHHCT--
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCc---HHHHHHHHHhHCC--
Confidence 457999999999999999999999999999999999999998764 689999999876543 3445666666422
Q ss_pred CceEEEEecCCCcccccccCCCCC-CCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++.............. | ...++.||+....+...+..++.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAINE-GEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHHT-TCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHhC-CCcceEEeCCCCHHHHHHHHHHHHH
Confidence 2344444433322222222222 5 77899999999999999988775
No 184
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.03 E-value=2.9e-05 Score=72.26 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=86.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..++..|+..|+.+..+.++.++++.+.. ..+|++++|..+...+ ....++.+++.......
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGS---GIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEE---HHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHhCcccCCC
Confidence 589999999999999999999999999999999999977654 4689999998775432 34566777764322233
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 34444332222222222 233677999999999999999887764
No 185
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.03 E-value=4.7e-05 Score=72.41 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=83.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+.. +.|..+.++.+|+..+... .+|++++|..+...+. ...+..+++......
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENS---PNLCLKLKRSKGLKN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC---------CHHHHHHTSTTCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcH---HHHHHHHHcCcccCC
Confidence 368999999999999999999999 9999999999999998664 5899999988765443 235566766543233
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... ...|...++.||+....+...+..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCEEEEECC----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 334444433332222222 233678999999999999999988774
No 186
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.03 E-value=2.5e-05 Score=75.73 Aligned_cols=121 Identities=12% Similarity=0.239 Sum_probs=87.3
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
.++.+||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..+...+ ....++.+++..+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMG---GEVFLEQVAKSYP- 78 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSC---HHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC-
Confidence 4568999999999999999999999999999999999999998754 489999998876433 3345666666432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++...............+...++.||+....+...+..++.
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 79 -DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp -TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 23344443322222222222221377899999999999998887764
No 187
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.02 E-value=7.1e-06 Score=77.78 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=85.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcC-CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G-~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..+||+|||++..+..++..|+..| +.|..+.++.+|++.+.. ..+|++++|..+...+.. ..++.+++...
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~-- 86 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGK---PGIVEARALWA-- 86 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGS---TTHHHHHGGGT--
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHH---HHHHHHHhhCC--
Confidence 4689999999999999999999999 999999999999877643 568999999887654433 34556666543
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+.+.+.
T Consensus 87 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVL-VRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp TCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCcEEEEeCCCCHHHHHHH-HHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 3334444333222222222 223678899999999999999887653
No 188
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=98.02 E-value=9.3e-06 Score=77.96 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=88.5
Q ss_pred ccCCceEEEeCCchhHHHHHHHHHHHcC-CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC
Q 002153 735 EFQGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813 (959)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~l~~~G-~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 813 (959)
...+.+||||||++..+..++..|+..| +.|..+.+..+++..+......+|++++|..+...+ ....++.+++..
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~~~ 93 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTA---ELAAIEKLSRLH 93 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHH---HHHHHHHHHHHC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCcc---HHHHHHHHHHhC
Confidence 3457899999999999999999999999 999999999988876543215689999998875432 334566666643
Q ss_pred CCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 814 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
. ...+++++........... ...|...++.||+....+...+..++..
T Consensus 94 ~--~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 94 P--GLTCLLVTTDASSQTLLDA-MRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp T--TCEEEEEESCCCHHHHHHH-HTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred C--CCcEEEEeCCCCHHHHHHH-HHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 1 2334444433322222222 2336778999999999999999888753
No 189
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.02 E-value=1.6e-05 Score=74.37 Aligned_cols=120 Identities=16% Similarity=0.253 Sum_probs=85.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
..++|+|||++..+..++..|+..|+ .+..++++.+|+..+.. ..+|++++|..++..+ ....++.+++.....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMD---GLGLLQAVRANPATK 80 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSC---HHHHHHHHTTCTTST
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCC---HHHHHHHHhcCcccc
Confidence 36899999999999999999999999 89999999999998875 3589999998876433 234566776643222
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+..++.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKA-AALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHH-HHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3344444332222111111 123677899999999999998887663
No 190
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.01 E-value=5.2e-05 Score=69.37 Aligned_cols=114 Identities=17% Similarity=0.270 Sum_probs=83.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..++..|+..|+.+..++++.+|+..+... .+|++++|..+...+ ....++.+++..+ ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 74 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGIS---GLEVAGEIRKKKK--DA 74 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHHCT--TC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHccCC--CC
Confidence 3799999999999999999999999999999999999988763 589999998876433 2345666766432 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++++..... . ......|...++.||+....+...+.+++
T Consensus 75 ~ii~~s~~~~~-~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 75 KIILLTAYSHY-R--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CEEEEESCGGG-G--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred eEEEEECCcch-H--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 34444332221 1 12222366789999999999988887653
No 191
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.01 E-value=8.9e-06 Score=77.27 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=87.3
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..+.... ......++.+++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~-~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKK-DSGIELLETLVKRG--FH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBT-THHHHHHHHHHHTT--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCC-ccHHHHHHHHHhCC--CC
Confidence 3689999999999999999999999999999999999987754 4589999998876510 22344667777653 23
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++........... ...|...++.||+....+...+.++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRA-MRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHH-HHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 334444333322222222 2236788999999999999999888754
No 192
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.00 E-value=4.7e-05 Score=70.13 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
+++|+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~--~~ 73 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED---GLSLIRRWRSNDV--SL 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHTTC--CS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHhcCC--CC
Confidence 3799999999999999999999999999999999999988764 579999998876433 2345666765422 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++++........... ...|...++.||+....+...+.+++
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 74 PILVLTARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHH-HHcCccceEECCCCHHHHHHHHHHHH
Confidence 33344332222211111 22367789999999999999887765
No 193
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=97.99 E-value=2.8e-05 Score=71.71 Aligned_cols=116 Identities=12% Similarity=0.195 Sum_probs=83.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
+.++|++||++..+..++..|+..|+. +..+.++.+|+..+... .+|++++|..++..+ ....++.+++..+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~-- 74 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKIDP-- 74 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGC---HHHHHHHHHHHCT--
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHhhCC--
Confidence 468999999999999999999999999 56899999999988653 589999998876543 2345666666432
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (959)
...+++++............ ..|...++.||+....+...+.++
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHH
Confidence 23344443332222211222 236778999999999998888764
No 194
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.98 E-value=9.7e-06 Score=84.08 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCFFA 953 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~~~ 953 (959)
+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+|| ||++||+++++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----lp~~~g~~~~~~l 62 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRI 62 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-TSCCSEEE----ECCTTHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-cCCCCEEE----eCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999999995 57899999 9999999999864
No 195
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=97.98 E-value=2.4e-05 Score=74.10 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=87.7
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..+...+ ...++..+++.. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLG---GLEMLDRIKAGG--AK 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--CC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 47899999999999999999999999999999999999998764 589999998876433 344666777653 22
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... ...|...++.||+....+...+.+++.
T Consensus 80 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CEEEECCCCCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 344444333222222122 223677899999999999999988874
No 196
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=97.96 E-value=2.9e-05 Score=72.14 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=84.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.+..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMD---GIEILKRMKVIDE--NI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCC---HHHHHHHHHHHCT--TC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHHhCC--CC
Confidence 589999999999999999999999999999999999998865 3589999998876433 2345666665421 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... ...|...++.||+....+...+.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQES-KELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHH-HhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 34444332222211111 123667899999999999999887663
No 197
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.95 E-value=4e-05 Score=71.44 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=85.9
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.++|+|||++..+..++..|+..|+.+..+.++.++++.+.. ..+|++++|..++..+ ....++.+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMS---GVELLRNLGDLK--IN 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CC
Confidence 4689999999999999999999999999999999999988765 3579999998876543 334566776642 12
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++............ ..|...++.||+....+...+..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3344443332222222222 23677999999999999999988764
No 198
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=97.95 E-value=9.7e-05 Score=69.09 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccc-cCccchHHHHHHHHhcCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~-~~~~~~~~~~~~~~~~~~~ 815 (959)
...+||+|||++..+..++..|+..|+.|..+.++.+|+..+... ..+|++++|..+.. .+ ....++.+++..+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~~- 78 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPD---GWQVARVAREIDP- 78 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSC---HHHHHHHHHHHCT-
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCC---HHHHHHHHHhcCC-
Confidence 457899999999999999999999999999999999999988754 26899999987753 32 3345667766532
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
...+++++............. ...++.||+....+...+.++....
T Consensus 79 -~~~ii~~s~~~~~~~~~~~~~---~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 79 -NMPIVYISGHAALEWASNGVP---DSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp -TCCEEEEESSCCTTHHHHSCT---TCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred -CCCEEEEeCCccHHHHHhhcC---CcceEeCCCCHHHHHHHHHHHHhcC
Confidence 333444433322221111111 1258999999999999999888644
No 199
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.95 E-value=5.1e-05 Score=71.84 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=86.5
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~ 814 (959)
...+||+|||++..+..++..|+..|+.+. ++.++.+|+..+... .+|++++|..+. ..+ ....+..+++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~---g~~~~~~l~~~-- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALD---GVETAARLAAG-- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSC---HHHHHHHHHHH--
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCC---HHHHHHHHHhC--
Confidence 457999999999999999999999999999 599999999988764 489999998765 222 33456666665
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
....+++++........... ...|...++.||+....+...+..++.
T Consensus 81 -~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 -CNLPIIFITSSQDVETFQRA-KRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp -SCCCEEEEECCCCHHHHHHH-HTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCHHHHHHH-HhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 23334444333332222122 233778999999999999999988874
No 200
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=97.94 E-value=4.4e-05 Score=69.40 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=83.8
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.++|++||++..+..+...|+..|+.|..+.+..+++..+... .+|++++|..+... .....++.+++......
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~---~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQ---SCLLLLQHLREHQADPH 75 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCC---THHHHHHHHHHTCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHhccccCC
Confidence 36899999999999999999999999999999999999988664 58999999876532 23446677776542223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
..+++++...... .....|...++.||+....+...+...+
T Consensus 76 ~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLFLGEPPVD----PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEEESSCCSS----HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEeCCCCch----hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 2333333322221 1122256789999999999988887554
No 201
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.94 E-value=4.5e-05 Score=71.94 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=85.3
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+.++.+++..+.. ..+|++++|..+...+ ....++.+++... ..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPDME---GTELLEKAHKLRP--GM 76 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCc---hHHHHHHHHhhCC--CC
Confidence 589999999999999999999999999999999999998875 3589999998876433 3345666665432 33
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... ...|...++.||+....+...+.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFS-LNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHH-HhccchhhccCCCCHHHHHHHHHHHHh
Confidence 34444333222222222 223678999999999999998887764
No 202
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=97.94 E-value=6.5e-05 Score=71.12 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=83.0
Q ss_pred ccCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+.+||+|||++..+..++..|+..|+.|..+.++.+++..+... .+|+++ +. + ......++.+++.
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~--~-~~g~~~~~~l~~~-- 83 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VS--D-KNALSFVSRIKEK-- 83 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----EC--S-TTHHHHHHHHHHH--
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----Ec--C-ccHHHHHHHHHhc--
Confidence 35678999999999999999999999999999999999999988764 578887 21 1 2234566777765
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHhc
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~~~ 863 (959)
.....++++............ ...|...++.||+ ....+...+..++.
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp STTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCCccEEEEeCCCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 203334444332222221122 2236778999999 99999999988764
No 203
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=97.94 E-value=4.3e-05 Score=71.90 Aligned_cols=119 Identities=9% Similarity=0.173 Sum_probs=87.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+||+|||++..+..++..|+..|+.+. .++++.+|+..+... .+|++++|..+...+ ....++.+++..+ .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~--~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTTC--C
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCC---hHHHHHHHHhcCC--C
Confidence 5899999999999999999999999998 899999999988663 589999998876533 3446677776532 3
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
..+++++............ ..|...++.||+....+..++..++...
T Consensus 75 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp SEEEEEECC---CTHHHHH-HTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCChHHHHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 3344444333322222222 2367889999999999999999888543
No 204
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=97.94 E-value=9.3e-05 Score=70.10 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=84.3
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+.++|+|||++..+..++..|+..|+.|..+.++.+|+..+... ..+|++++|..+...+ ....+..+++..
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~---g~~~~~~l~~~~-- 86 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLS---IFSLLDIVKEQT-- 86 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSC---HHHHHHHHTTSS--
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--
Confidence 4568999999999999999999999999999999999999887652 3589999998876433 334566676631
Q ss_pred CCceEEEEe-cCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLA-NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
....+++++ ....... .... ...++.||+....+...+..++.
T Consensus 87 ~~~~ii~ls~~~~~~~~----~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE----SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC----CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH----HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 223344443 2222211 2222 56899999999999999887664
No 205
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.94 E-value=5.6e-05 Score=69.94 Aligned_cols=115 Identities=15% Similarity=0.199 Sum_probs=83.6
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..++..|+..|+.|..++++.+++..+.. ..+|++++|..+...+ ....++.+++. . ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~--~-~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKN---GLLLARELREQ--A-NV 75 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSC---HHHHHHHHHHH--C-CC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhC--C-CC
Confidence 479999999999999999999999999999999999998865 3589999998876543 23456666664 1 33
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++++........... ...|...++.||+....+...+..++
T Consensus 76 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 34444332222211111 12367789999999999998887665
No 206
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=97.93 E-value=5.9e-05 Score=72.79 Aligned_cols=120 Identities=10% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcC--CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
..++||+|||++..+..++..|+..| +.|..+.++.+|++.+.. ..+|++++|..+...+ ...+++.+++..
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~---g~~~~~~l~~~~- 92 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKT---GLEVLEWIRSEK- 92 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSC---HHHHHHHHHHTT-
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCc---HHHHHHHHHHhC-
Confidence 45799999999999999999999998 889999999999998865 4589999998876533 344666777642
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
....+++++............ ..|...++.||+....+..++.+++..
T Consensus 93 -~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 93 -LETKVVVVTTFKRAGYFERAV-KAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp -CSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred -CCCeEEEEeCCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 233444444433322222222 236789999999999999999988853
No 207
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=97.92 E-value=5.8e-05 Score=71.85 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=86.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|+..+.. ..+|++++|. +... .....+..+++... .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~~---~g~~~~~~l~~~~~--~ 75 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEGE---ESLNLIRRIREEFP--D 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTTH---HHHHHHHHHHHHCT--T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCCC---cHHHHHHHHHHHCC--C
Confidence 4689999999999999999999999999999999999999876 4689999998 5332 23445667766432 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
..+++++........... ...|...++.||+....+...+.+++...
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINS-VKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CEEEEEESCCCHHHHHHH-HHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCEEEEECCCCHHHHHHH-HHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 334444333222211111 22367789999999999999999888543
No 208
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=97.92 E-value=9.5e-05 Score=69.66 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=86.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.++|+|||++..+..++..|+..|+.|..+.++.+++..+... .+|++++|..+...+ ....+..+++... .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~ 75 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLD---GIEVCKQLRQQKL--M 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--C
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHcCCC--C
Confidence 36899999999999999999999999999999999999887653 579999998876443 3446677776532 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+++++........... ...|...++.||+....+...+..++..
T Consensus 76 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 76 FPILMLTAKDEEFDKVLG-LELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CCEEEEECTTCCCCHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHH-HhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 233334332222111111 1236778999999999999999887753
No 209
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.91 E-value=7.7e-05 Score=68.84 Aligned_cols=115 Identities=12% Similarity=0.209 Sum_probs=83.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|+|||++..+..++..|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.+++. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~~~~~l~~~---~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDEN---GLMLTRALRER---STV 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHTT---CCC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCC---hHHHHHHHHhc---CCC
Confidence 479999999999999999999999999999999999988765 3589999998876543 23456667662 123
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.+++++........... ...|...++.||+....+...+.+++
T Consensus 75 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 34444332222211111 12367789999999999988887665
No 210
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.91 E-value=5.4e-05 Score=71.93 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=85.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..++|+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ...+++.+++.. .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~---~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGD---GWTLCKKIRNVT---T 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEE---HHHHHHHHHTTC---C
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHccCC---C
Confidence 35899999999999999999999999999999999999988753 589999998875432 344667777643 3
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++............ ..|...++.||+....+...+..++.
T Consensus 76 ~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 76 CPIVYMTYINEDQSILNAL-NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCEEEEESCCCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2334443322222211122 23677899999999999999887764
No 211
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=97.90 E-value=3.7e-05 Score=72.85 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=86.7
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEecccccc--CccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK--DTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~--~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..+... ........++.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~- 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYR- 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHCT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCc-
Confidence 36899999999999999999999999999999999999998764 48999999877510 01223345667766421
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...+++++........... ...|...++.||+....+...+..++..
T Consensus 80 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 80 -DLPVVLFTAYADIDLAVRG-IKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -TCCEEEEEEGGGHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -CCCEEEEECCCCHHHHHHH-HHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 2334444332222111112 2236778999999999999999988854
No 212
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.8e-05 Score=88.73 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEeecccccchhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCc
Q 002153 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (959)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (959)
++.+++.||+.||+++. ...|.|.+. +.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~------------------------------------------------- 52 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY------------------------------------------------- 52 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999986 455655542 00
Q ss_pred cCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCCC--cEE
Q 002153 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI--GST 703 (959)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~--Gtt 703 (959)
....|+|.|+|+|||+++++.+|+||++.+.... ...|-.|-||+-+..+ +++.+.|.... |+.
T Consensus 53 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~~~~~~~ 124 (367)
T 3h4l_A 53 ---GLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTSPPKADK 124 (367)
T ss_dssp ---TTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESSTTCEEE
T ss_pred ---CEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEECCCCEEE
Confidence 0135999999999999999999999997644321 1112237777755444 26899887643 444
Q ss_pred EEE
Q 002153 704 FTF 706 (959)
Q Consensus 704 F~~ 706 (959)
..+
T Consensus 125 ~~~ 127 (367)
T 3h4l_A 125 LEY 127 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 213
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.86 E-value=4.2e-05 Score=86.34 Aligned_cols=117 Identities=13% Similarity=0.140 Sum_probs=86.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++||||||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..++.. .++.+++..+ ..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~e---ll~~lr~~~~--~~ 73 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVN---FIDFIKENSP--DS 73 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTT---HHHHHHHHCT--TC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHH---HHHHHHhhCC--CC
Confidence 379999999999999999999999999999999999999876 3589999999887655433 4556665432 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++...+....... -..|...++.||+....+...+.+++.
T Consensus 74 pvI~lT~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKA-IKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp EEEEEECSSCCHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 34444332222222222 223677899999999999999988875
No 214
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.85 E-value=8.3e-05 Score=68.19 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=83.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++++|||++..+..++..|+..|+.+..+.++.+++..+... .+|++++|..+...+ ....++.+++.. ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~---~~ 73 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEID---GLEVAKTIRKTS---SV 73 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHC---CC
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCC---HHHHHHHHHhCC---CC
Confidence 3799999999999999999999999999999999999887653 589999998876433 234556666531 22
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++........... ...|...++.||+....+...+..++.
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 74 PILMLSAKDSEFDKVIG-LELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 33334332222211111 123677899999999999988877653
No 215
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=97.85 E-value=0.00023 Score=73.95 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=87.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.++||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..++..+ ....+..+++..+ .
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~~--~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLD---GVSVVTALRAMDN--D 79 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC--C
Confidence 46899999999999999999999999999999999999988653 589999998876543 3345667776431 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... ...|...++.||+....+...+..++.
T Consensus 80 ~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAG-LEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTT-TTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 333333332222222222 234778999999999999999988774
No 216
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=97.83 E-value=4.7e-05 Score=72.94 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=74.7
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+||+|||++..+..++..|+.. |+.+ ..+.++.+|++.+.... .+|++++|..+...++ ...++.+++...
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g---~~~~~~lr~~~~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDG---MEFLRHAKLKTR 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTT---CHHHHHHHHHCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCH---HHHHHHHHhcCC
Confidence 4568999999999999999999998 8886 48999999999887642 6899999998876443 335566665432
Q ss_pred CCCceEEEEec-CCCcccccccCCCCCCCccccCCCChH
Q 002153 815 GFQSKLFLLAN-SISSSRANTSTDGVSIPSVIMKPLRSS 852 (959)
Q Consensus 815 ~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~l~KPl~~~ 852 (959)
..++++.. ..............|...++.||+...
T Consensus 88 ---~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 123 (145)
T 3kyj_B 88 ---AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp ---CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred ---CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHH
Confidence 23333332 122211111122336778999999843
No 217
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.83 E-value=5.4e-05 Score=73.15 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=84.7
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+. |+.|..+.++.+|++.+... .++|++++|..+...+ ....++.+++..+ .
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~--~ 76 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGME---GTEVIQKARLISP--N 76 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSC---HHHHHHHHHHHCS--S
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--C
Confidence 46899999999999999999986 99999999999999988764 3489999998876543 3345666665432 2
Q ss_pred ceEEEEecCCCcccccccCCCCC-CCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++.............. | ...++.||+....+..++..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVNE-GQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHHH-TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc-CCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 334444332222222222222 4 67899999999999999887764
No 218
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.83 E-value=0.00012 Score=74.91 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=29.4
Q ss_pred HhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 002153 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484 (959)
Q Consensus 439 ~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~ 484 (959)
+-+....||..|=|+.|.|++++= .-++..+|+..+....+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~ 64 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKH 64 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 456667999999999999999862 223456666666555443
No 219
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=97.80 E-value=0.00017 Score=74.54 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=87.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+++||+|||++..+..++..|+..|+.|..+.++.+|+..+.. ..+|++++|..++..+ ....+..+++..+ .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~---g~~~~~~lr~~~~--~ 74 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHD---GWEILKSMRESGV--N 74 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHTTC--C
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC--C
Confidence 3689999999999999999999999999999999999998865 3589999998876543 3446677776432 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++.......... ....|...++.||+....+...+..++.
T Consensus 75 ~~ii~ls~~~~~~~~~~-~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 75 TPVLMLTALSDVEYRVK-GLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CCEEEEESSCHHHHHHH-TCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHH-HHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 33333333222222222 2234778999999999999999988874
No 220
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=97.79 E-value=7.9e-05 Score=71.95 Aligned_cols=121 Identities=11% Similarity=0.119 Sum_probs=87.9
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCE--EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 813 (959)
..+.+||+|||++..+..++..|+..|.. +..+.++.+|++.+... .+|++++|..+...+ ....+..+++..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~ 87 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMD---GAQVAAAVRSYE 87 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC
Confidence 45689999999999999999999999955 66899999999998763 589999998875433 344666777653
Q ss_pred CCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 814 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
. ...+++++............ ..|...++.||+....+..++.+++..
T Consensus 88 ~--~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 88 L--PTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp C--SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred C--CCeEEEEEccCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2 23344444333322222222 236788999999999999999988854
No 221
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=97.79 E-value=0.00012 Score=74.86 Aligned_cols=116 Identities=9% Similarity=0.118 Sum_probs=85.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+||+|||++..+..++..|+..|+.|. .+.++.+|+..+... .+|++++|..++..+ ....+..++.... .
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~---g~~~~~~l~~~~~--~ 86 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRD---GIDAASEIASKRI--A 86 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--S
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCC---hHHHHHHHHhcCC--C
Confidence 5899999999999999999999999998 899999999988653 589999998876543 2345667766432 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
|.+++... ........ ....|...++.||+....+...+..++.
T Consensus 87 pii~lt~~-~~~~~~~~-~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 87 PIVVLTAF-SQRDLVER-ARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp CEEEEEEG-GGHHHHHT-TGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEecC-CCHHHHHH-HHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 44443322 22211112 2223677899999999999998887764
No 222
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.79 E-value=6.4e-05 Score=72.89 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=84.8
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
+.+||+|||++..+..++..|+..|+.|..++++.+|+..+.. ..+|++++|..+...+ ....+..+++... .
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~---g~~~~~~l~~~~~--~ 75 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMD---GLALFRKILALDP--D 75 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSC---HHHHHHHHHHHCT--T
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 4689999999999999999999999999999999999987755 4589999998875433 3345666666422 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... ...|...++.||+....+...+..++.
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQA-IQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp SCEEEEECGGGHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 333344332222111111 123677899999999999999887764
No 223
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=97.77 E-value=5.3e-05 Score=71.12 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=85.5
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|..+..+++..+++..+... +|++++|..+...+ ....++.+++... .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~~---g~~~~~~l~~~~~--~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDMD---GIEVIRHLAEHKS--P 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTTH---HHHHHHHHHHTTC--C
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCCC---HHHHHHHHHhCCC--C
Confidence 46899999999999999999999999999999999988766443 89999998876432 3445667776431 2
Q ss_pred ceEEEEecCCCc----ccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 818 SKLFLLANSISS----SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 818 ~~~~ll~~~~~~----~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
..+++++..... ..........|...++.||+....+...+.++.+..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 75 ASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 334444332221 011111223356689999999999999999888644
No 224
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.75 E-value=8.2e-05 Score=69.70 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=84.6
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.++|++||++..+..++..|+.. |+.+. .++++.+|++.+... .+|++++|..++..+ ....++.+++... .
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~~-~ 76 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLD---GLAVLERIRAGFE-H 76 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHHCS-S
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-C
Confidence 58999999999999999999988 88865 789999999988653 579999998876543 2345666766321 2
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+.+++++........... ...|...++.||+....+...+.+++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKA-VELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp CCEEEEEEETTCHHHHHHH-HHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 3444444433322222222 2236778999999999999999887753
No 225
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.73 E-value=6.4e-05 Score=71.51 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=84.4
Q ss_pred eEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 002153 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (959)
Q Consensus 740 rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (959)
+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++.. ....
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~--~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMS---GEDVLDWINQND--IPTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSB---HHHHHHHHHHTT--CCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcC--CCCC
Confidence 799999999999999999999999999999999999988653 579999998876433 334566776642 1233
Q ss_pred EEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 820 ~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+++++........... ...|...++.||+....+...+..++.
T Consensus 79 ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNL-IQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHH-HHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4444332222221112 223677899999999999998887764
No 226
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=97.71 E-value=0.0001 Score=75.27 Aligned_cols=118 Identities=10% Similarity=0.097 Sum_probs=84.6
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||+|||++..+..++..|+..|+.|..+.++.+|+..+.. ..+|++++|..++..+ ....+..+++..+ .
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~--~ 76 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMS---GIELQEQLTAISD--G 76 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSC---HHHHHHHHHHTTC--C
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhcCC--C
Confidence 3589999999999999999999999999999999999988754 4689999998876533 3445667776432 2
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..+++++........... ...|...++.||+....+...+..++.
T Consensus 77 ~~ii~ls~~~~~~~~~~a-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 77 IPIVFITAHGDIPMTVRA-MKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCEEEEESCTTSCCCHHH-HHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 233333332222111111 123667899999999999888877663
No 227
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=97.70 E-value=0.00012 Score=70.81 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=86.8
Q ss_pred CCceEEEeCCchhHHHHHHHHHHH-cCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~-~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (959)
...+||+|||++..+..++..|+. .|+.+. .+.++.+|+..+... .+|++++|..+...+ ....+..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPG---GIEATRHIRQWDG 78 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSC---HHHHHHHHHHHCT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC
Confidence 457899999999999999999998 899998 899999999988764 489999998875433 3446667776532
Q ss_pred CCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 815 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+..++.
T Consensus 79 --~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 79 --AARILIFTMHQGSAFALKA-FEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp --TCCEEEEESCCSHHHHHHH-HHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred --CCeEEEEECCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 2334444333222222222 223678899999999999999988774
No 228
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.69 E-value=0.00016 Score=66.36 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=82.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..++..|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....++.+++. . ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~--~-~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--S-AV 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEE---HHHHHHHHHTT--C-CC
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCc---HHHHHHHHHhC--C-CC
Confidence 479999999999999999999999999999999999988764 3579999998876433 33456666632 1 22
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHh
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~ 862 (959)
.++++............. ..|...++.||+....+...+..++
T Consensus 74 ~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAAL-DAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp CEEEEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHH-hcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 333443322222111111 2367789999999999998887765
No 229
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.67 E-value=0.00018 Score=67.81 Aligned_cols=118 Identities=9% Similarity=0.109 Sum_probs=84.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcC--CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.++|++||++..+..++..|+..| ..+..+.++.+|++.+... .+|++++|..++..+ ....++.+++.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~---g~~~~~~l~~~~--~ 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMT---GLEVLAEIRKKH--L 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--C
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHHHC--C
Confidence 579999999999999999999998 6778899999999988653 579999998876543 334566777632 1
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...+++++............ ..|...++.||+....+...+.+++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAV-VNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 33444443332222222222 236789999999999999999887753
No 230
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.66 E-value=0.00027 Score=67.44 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=81.2
Q ss_pred ceEEEeCCchhHHHHHHHHHHH--cCCEEE-EEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~--~G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
.+||+|||++..+..++..|+. .|+.+. .+.++.+++..+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~---g~~l~~~l~~~~~- 76 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMD---GIELVDNILKLYP- 76 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSC---HHHHHHHHHHHCT-
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC-
Confidence 5899999999999999999874 688777 89999999988865 4589999998876543 3345666666421
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
...+++++........... ...|...++.||+....+...+.+++.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 77 -DCSVIFMSGYSDKEYLKAA-IKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp -TCEEEEECCSTTTCCC-------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEeCCCcHHHHHHH-HhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 2344444333222222222 233677999999999999998887764
No 231
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=97.66 E-value=0.00028 Score=68.11 Aligned_cols=121 Identities=11% Similarity=0.118 Sum_probs=82.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHc-CC-EEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~-G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+.. |+ .+..+.+..+|+..+..+ ..+|++++|..+...+ ....++.+++..+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 77 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAE---AIDGLVRLKRFDP- 77 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC---------CHHHHHHHHHHCT-
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCc---hHHHHHHHHHhCC-
Confidence 358999999999999999999998 88 789999999999998762 4689999998775433 2345666666522
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
...+++++........... ...|...++.||+....+..++..++...
T Consensus 78 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 78 -SNAVALISGETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp -TSEEEEC-----CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred -CCeEEEEeCCCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 2334444332222211112 22367789999999999999999888543
No 232
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=97.64 E-value=0.00042 Score=65.81 Aligned_cols=117 Identities=16% Similarity=0.260 Sum_probs=84.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+.. |+. +..+.++.+|+..+... .+|++++|..+...+ ...++..+++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLD---GVLLAQNISQFA-- 81 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSC---HHHHHHHHTTST--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCC---HHHHHHHHHccC--
Confidence 478999999999999999999987 888 56899999999988764 489999998876432 334566666532
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
..+.+++++.. .. ..... ...|...++.||+....+...+.+++..
T Consensus 82 ~~~~ii~~s~~-~~-~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAW-KE-HAVEA-FELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESC-CT-THHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-HH-HHHHH-HhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 23444544433 21 11111 2236778999999999999999887753
No 233
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=97.63 E-value=0.00021 Score=75.74 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=87.6
Q ss_pred CCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
...+||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..++..+ ....++.+++. .
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~---G~~l~~~lr~~--~- 107 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFD---GGDVVQRLRKN--S- 107 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHH---HHHHHHHHHTT--C-
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHcC--C-
Confidence 346899999999999999999999999999999999999988664 589999998876533 33456677653 1
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
..++++++............ ..|...++.||+....+...+..++...
T Consensus 108 ~~~iI~lt~~~~~~~~~~a~-~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRLL-GLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CCCEEEEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCEEEEECCCCHHHHHHHH-HCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 22334443322222222222 2367789999999999999999888643
No 234
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=97.62 E-value=0.00026 Score=74.20 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=86.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....+..+++.. ..|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~~~~~lr~~~--~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMN---GIDVCRVLRADS--GVP 78 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHTTC--CCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCc
Confidence 5899999999999999999999999999999999999988653 589999998876533 334566777642 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcCC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~~ 865 (959)
.+++.+. .......... ..|...++.||+....+...+..++...
T Consensus 79 ii~lt~~-~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 79 IVMLTAK-TDTVDVVLGL-ESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EEEEEET-TCCSCHHHHH-HTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred EEEEeCC-CCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 4444332 2222111111 2367889999999999999999888543
No 235
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=97.60 E-value=0.00028 Score=69.39 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=82.2
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcC--CEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+..| ..+..+.++.+|++.+... .+|++++|..+...+ ....+..+++...
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~l~~~lr~~~~- 98 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLN---GIEALKLIMKKAP- 98 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHSC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC-
Confidence 4689999999999999999999986 3355789999999988654 589999998876543 3445667776542
Q ss_pred CCceEEEEecCCCcc-cccccCCCCCCCccccCCCC---------hHHHHHHHHHHhcCC
Q 002153 816 FQSKLFLLANSISSS-RANTSTDGVSIPSVIMKPLR---------SSMLAASLQRAMGVG 865 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~l~KPl~---------~~~l~~~l~~~~~~~ 865 (959)
.| ++++....... .........|...++.||+. ...+..++++.+...
T Consensus 99 -~~-ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 99 -TR-VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp -CE-EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred -ce-EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 23 33333322211 11111122367899999998 577777887777543
No 236
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.56 E-value=9.8e-05 Score=74.82 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred cCCceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
+.+.+||||||++..+..++..|+..|+.|..+.++.+|+ ...+|++++|..++..+ + . ....++...
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~--g-~-l~~~~~~~~-- 77 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHH--D-E-IAALLAAGT-- 77 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHH--H-H-HHHHHHHSC--
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccc--h-H-HHHHHhccC--
Confidence 4568999999999999999999999999999998877765 24789999999885443 2 2 445555432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
....+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQI-IELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHH-HHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHH-HHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 23334444332222211111 223677899999999999888877663
No 237
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=97.56 E-value=0.00025 Score=67.31 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=82.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+.. +.|..+.++.+|+..+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~l~~~~~--~~ 73 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRT---GVDFLTEVRERWP--ET 73 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSC---HHHHHHHHHHHCT--TS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHHhCC--CC
Confidence 37999999999999999999875 9999999999999988764 589999998876543 2345666766422 23
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++...............|...++.||+....+...+..++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 344443322222211121222467899999999999988877663
No 238
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.53 E-value=0.00029 Score=79.97 Aligned_cols=117 Identities=12% Similarity=0.193 Sum_probs=84.3
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~d---G~ell~~lr~~~~--~~ 73 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVN---GLEILKWIKERSP--ET 73 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--CC
Confidence 479999999999999999999999999999999999999876 3589999999886543 3345666666422 22
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
.+++++...+........ ..|...++.||+....+...+.+++.
T Consensus 74 pvIvlT~~~~~~~~~~a~-~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 74 EVIVITGHGTIKTAVEAM-KMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEEEEEETTCHHHHHHHH-TTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHH-hcCceEEecCCCCHHHHHHHHHHHHH
Confidence 333333322222111222 23678999999999998888776653
No 239
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=97.52 E-value=0.00028 Score=73.23 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=85.4
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..|+.|..+.++.+|+..+... .+|++++|..++..+ ....+..+++.. ..|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~--~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMS---GTDVCKQLRARS--SVP 77 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHHC--SCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHcCC--CCC
Confidence 5899999999999999999999999999999999999988653 589999998876533 334566666641 224
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.++ ++........... ...|...++.||+....+...+..++..
T Consensus 78 ii~-lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIM-VTARDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEE-EECCHHHHHHHHH-HHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEE-EeCCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 443 3332221111111 1236778999999999999999988854
No 240
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=97.51 E-value=0.00011 Score=67.61 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.++|++||++..+..++..|+..|+.+..+.++.+++..+.. ..+|++++|..+...+.. ..++.+++..+ ..|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~---~~~~~l~~~~~-~~~ 77 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGL---ALLKQIKQRHP-MLP 77 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHC---STHHHHHHHCT-TSC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHH---HHHHHHHhhCC-CCC
Confidence 579999999999999999999999999999999999988754 358999999877543322 23455555321 123
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
. ++++......... .....|...++.||+....+...+..++.
T Consensus 78 i-i~~s~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 78 V-IIMTAHSDLDAAV-SAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp C-CCBCCSTTSTTTT-SSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred E-EEEecCCCHHHHH-HHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 3 3332222222222 22233677899999999999998877663
No 241
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=97.48 E-value=0.00039 Score=71.40 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=86.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcC-CEE-EEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G-~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (959)
..+||+|||++..+..++..|+..| +.+ ..+.++.+|+..+... .+|++++|..++..+ ....++.+++..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~- 78 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMN---GLETLDKLREKSL- 78 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSC---HHHHHHHHHHSCC-
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 3689999999999999999999875 887 7899999999988653 589999999876543 3446677776432
Q ss_pred CCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 816 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
...+++++............ ..|...++.||+....+...+..++..
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 79 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp -CSEEEEEECCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred -CCcEEEEECCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 23344443332222222222 236788999999999999999988754
No 242
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.45 E-value=0.00011 Score=76.84 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|.|.|||+||+++++...|..+.+.+. ......|..|+|++-+.. .+-++.+.|...
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 5899999999999998887766543210 111233457899865532 344677777654
No 243
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.44 E-value=0.00045 Score=71.35 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=82.0
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
++||+|||++..+..++..|+..|+.|..+.++.+|+..+.. ..+|+++ ++. ......+..+++. . ...
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----lp~---~~g~~~~~~lr~~-~-~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD---KNALSFVSRIKEK-H-SSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----ECC---TTHHHHHHHHHHH-C-TTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----eCC---CCHHHHHHHHHhC-C-CCC
Confidence 479999999999999999999999999999999999998865 3578888 222 2234566777765 2 133
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHhcCC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGVG 865 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~~~~~ 865 (959)
.+++++........... ...|...++.||+ ....+...+..++...
T Consensus 70 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCHHHHHHH-HHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 34444332222221122 1236778999999 9999999999988543
No 244
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=97.42 E-value=0.00037 Score=79.43 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=84.5
Q ss_pred ceEEEeCCchhHHHHHHHHHHH-cCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~-~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+||||||++..+..++..|+. .|+.|..+.++.+|++.+... ..+|++++|..++..++ ...++.+++... .
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG---~ell~~l~~~~~--~ 77 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDG---LAFLRHASLSGK--V 77 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCH---HHHHHHHHHHTC--E
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCH---HHHHHHHHhcCC--C
Confidence 5899999999999999999998 588999999999999998652 36899999999876543 335566665431 2
Q ss_pred ceEEEEecCCCcc-----cccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 818 SKLFLLANSISSS-----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 818 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
+.++ +.++.... .........|...++.||+....+...+.+++.
T Consensus 78 ~~ii-~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 78 HSVI-LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp EEEE-ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred ceEE-EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 3333 33333222 111112233566899999999999999888764
No 245
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=97.40 E-value=0.0002 Score=81.16 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=80.1
Q ss_pred CceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
..+||||||++..+..++..|++.|+.|..+.++.+|++.+... .+|++++|..++..++ ...++.+++... ..
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G---~~~~~~lr~~~~-~~ 78 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDG---LELIRRIRQTAS-ET 78 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCT---HHHHHHHHHTTC-CC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCH---HHHHHHHHhhCC-CC
Confidence 36899999999999999999999999999999999999998763 5899999998875443 345666766421 12
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHh
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAM 862 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~~ 862 (959)
|.+++. +..........-..|...++.||+ ....+...+.+.+
T Consensus 79 pii~lt--~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 79 PIIVLS--GAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp CEEEC-----CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred cEEEEE--cCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 333332 222211111112236778999999 5666665554443
No 246
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.39 E-value=0.00037 Score=63.20 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=48.5
Q ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002153 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (959)
Q Consensus 435 ~aks~Fla~iSHEIRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (959)
..+.+|++.+|||+|||++.|.+.++.+.+. ..++.+.+...+.++..++++++++++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999977543 256778899999999999999987653
No 247
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=97.39 E-value=0.00038 Score=71.70 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=83.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (959)
.+||+|||++..+..++..|+..| .|..+.++.+|++.+ ..+|++++|..++..+ ....+..+++.. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~---g~~~~~~lr~~~--~~~ 72 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYS---GYEICRMIKETR--PET 72 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSB---HHHHHHHHHHHC--TTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 489999999999999999999999 999999999999765 5789999998876543 334566777653 133
Q ss_pred eEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 819 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
.+++++........... ...|...++.||+....+...+..++..
T Consensus 73 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKG-FEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 34444332222211111 1236778999999999999999888753
No 248
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=97.39 E-value=0.0016 Score=72.82 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=80.8
Q ss_pred ceEEEeCCchhHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+||+|||++..+..++..|+.. |+. +..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~d---Glell~~l~~~~p-- 76 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMD---GLDFLEKLMRLRP-- 76 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSC---HHHHHHHHHHSSC--
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCC---HHHHHHHHHhcCC--
Confidence 58999999999999999999996 998 6799999999998865 3589999999886543 2345667766432
Q ss_pred CceEEEEecCCCc-ccccccCCCCCCCccccCCCCh---------HHHHHHHHHHhcC
Q 002153 817 QSKLFLLANSISS-SRANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGV 864 (959)
Q Consensus 817 ~~~~~ll~~~~~~-~~~~~~~~~~~~~~~l~KPl~~---------~~l~~~l~~~~~~ 864 (959)
.|.++ +...... .+........|...++.||+.. ..+...+..+...
T Consensus 77 ~pVIv-lS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 77 MPVVM-VSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp CCEEE-EECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEE-EECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 24333 3222111 0101111123677899999983 6677777666543
No 249
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=97.09 E-value=0.00032 Score=72.93 Aligned_cols=117 Identities=9% Similarity=0.093 Sum_probs=83.1
Q ss_pred ceEEEeCCchhHHHHHHHHHHHcC-CE-EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~~~G-~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (959)
.+||+|||++..+..++..|+..| +. +..+.++.+|++.+... .+|++++|..++..+ ....+..+++..+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~-- 74 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGN---GIELCRDLLSRMP-- 74 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEE---HHHHHHHHHHHCT--
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhCC--
Confidence 479999999999999999999987 88 45799999999988653 589999998876533 3345666766421
Q ss_pred CceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhc
Q 002153 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (959)
Q Consensus 817 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~ 863 (959)
..++++++........... ...|...++.||+....+...+..++.
T Consensus 75 ~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDA-ILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2334444332222221111 223677899999999999998887774
No 250
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=97.06 E-value=0.00074 Score=75.13 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=80.6
Q ss_pred ceEEEeCCchhHHHHHHHHHH-HcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 002153 739 MKALVVDPRPIRAKVSRYHIQ-RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (959)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~l~-~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (959)
.+||||||++..+..++..|+ ..|+.|..+.++.+|++.+... .+|++++|..++..++ ..+++.++.......
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G---~~~~~~l~~~~~~~~ 93 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDG---LTLLAAYRGNPATRD 93 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBH---HHHHHHHTTSTTTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCH---HHHHHHHhcCcccCC
Confidence 579999999999999999996 4699999999999999998653 5799999998865442 345667776432223
Q ss_pred ceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 002153 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (959)
Q Consensus 818 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (959)
..+++++............ ..|...++.||+....+...+..
T Consensus 94 ~~ii~~s~~~~~~~~~~a~-~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 94 IPIIVLSTKEEPTVKSAAF-AAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp SCEEEEESSCCHHHHHHHH-HTTCSEEEESCCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHH-hcChheEeeccCCHHHHHHHHHH
Confidence 3333333322222111122 23678999999998887766543
No 251
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.02 E-value=0.00085 Score=71.84 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|.|.|||+||+++++...|..+.+.+. ......|..|+|++-+..+ .-++.+.|...
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~~ 183 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 183 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEecC
Confidence 5899999999999998776655443211 1112335679999866543 35677877754
No 252
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.01 E-value=0.00014 Score=78.10 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=36.7
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC---------------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP---------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~---------------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+++++...|..+.+.+. ......|..|+|++-+..++ -++.|.|...
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 5899999999999998666543321100 01112256899988665443 5777777664
No 253
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.92 E-value=0.00036 Score=73.65 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCC------------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s------------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|.|.|||+||+++++...|..+.+.+.. .....|..|+|++-+.. ..-++.|.|...
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 48999999999999998888666442210 01123568999974432 334677777654
No 254
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.91 E-value=0.0035 Score=64.84 Aligned_cols=119 Identities=8% Similarity=0.080 Sum_probs=80.0
Q ss_pred CceEEEeCCchhHHHHHHHHHHH-cCCEEEE-EcCHHHHHHH-HhcCCCcccEEEEeccccccCccchHHHHHHHHh-cC
Q 002153 738 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEV-VSDQLQCLSQ-IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK-LG 813 (959)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~l~~-~G~~v~~-~~~~~~al~~-l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~-~~ 813 (959)
..+||+|||++..+..++..|+. .|+.+.. +.++.+++.. +. ...+|++++|..++..+ ....+..+++ ..
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~--~~~~dlvllD~~mp~~~---G~~~~~~lr~~~~ 81 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE--SRSIQMLVIDYSRISDD---VLTDYSSFKHISC 81 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG--GGGCCEEEEEGGGCCHH---HHHHHHHHHHHHC
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh--ccCCCEEEEeCCCCCCC---HHHHHHHHHHhhC
Confidence 36899999999999999999995 6898855 3556555543 22 35689999999886543 3445666665 22
Q ss_pred CCCCceEEEEecCCCcccccccCCCCCCCccccCCCChHHHHHHHHHHhcC
Q 002153 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (959)
Q Consensus 814 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~~~~ 864 (959)
+ ..++++++.......... ....|...++.||+....+...+..++..
T Consensus 82 ~--~~~ii~lt~~~~~~~~~~-~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 82 P--DAKEVIINCPQDIEHKLL-FKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp T--TCEEEEEEECTTCCHHHH-TTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred C--CCcEEEEECCcchhHHHH-HHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 1 233333333222222222 22336778999999999999999888854
No 255
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.68 E-value=0.0015 Score=73.82 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCChhh--------HhhccCCccccCC---CCcCcCCC-ccchHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEA--------QSRIFTPFMQVGP---SISRTHGG-TGIGLSISKYLVG 686 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IFepF~q~~~---s~s~~~~G-tGLGLsI~k~LVe 686 (959)
.|+|.|+|.|||.+. .+.+|..++..+. ...+..+| .|.||+.+..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 389999999999998 6778888764421 11222345 8999999988875
No 256
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=95.98 E-value=0.0035 Score=65.53 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (959)
.|.|.|||+||+++++...|.+....+. ......|-.|+||+-+-. ..-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCC
Confidence 5899999999999998776655432110 112344667999885532 2237888887654
No 257
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=95.71 E-value=0.023 Score=69.89 Aligned_cols=111 Identities=9% Similarity=0.021 Sum_probs=76.5
Q ss_pred ceEEEeCCch-hH-------HHHHHHHHHHcCCEEEEEcCHHHHHHHHhcCCCcccEEEEeccccccCc-cchHHHHHHH
Q 002153 739 MKALVVDPRP-IR-------AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNL 809 (959)
Q Consensus 739 ~rvLvvdd~~-~~-------~~v~~~~l~~~G~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~-~~~~~~~~~~ 809 (959)
++||||||++ .. +..++..|++.|++|..+.++++|+..+... ..+|++++|..++..+. .....+++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4899999998 77 8899999999999999999999999988753 34899999988754111 2223467788
Q ss_pred HhcCCCCCceEEEEecCC-CcccccccCCCCCCCccccCCCChHH
Q 002153 810 RKLGCGFQSKLFLLANSI-SSSRANTSTDGVSIPSVIMKPLRSSM 853 (959)
Q Consensus 810 ~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~l~KPl~~~~ 853 (959)
|+.+. ..|.+++.+.+. ....... -..|...++.||.....
T Consensus 80 R~~~~-~iPIi~lTa~~~~~~d~~~~--l~~gaddyi~kpf~~~e 121 (755)
T 2vyc_A 80 HERQQ-NVPVFLLGDREKALAAMDRD--LLELVDEFAWILEDTAD 121 (755)
T ss_dssp HHHST-TCCEEEEECHHHHHHTCSHH--HHHHCSEEEETTTSCHH
T ss_pred HHhCC-CCCEEEEecCCcchhhccHh--HhhcCCceEeCCCCCHH
Confidence 87642 236555544322 1111111 12256789999998777
No 258
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=95.47 E-value=0.25 Score=52.52 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeee--
Q 002153 108 SSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA-- 185 (959)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~~-- 185 (959)
..+..+..++.+...++..|..+...++.....++.||..+... ...|+..+..+..+.+..+|.+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (290)
T 3lib_A 6 TTQEEKLAYQQSVEMASNYANQFDADMKANLAIARTISTTMESY------ETADRDEALLILENLLRDNPHLLGTYVAFE 79 (290)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHTCTTCSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCCeEEEEEEEc
Confidence 34455566677788899999999999999999999999888753 2457888999999999999999776443
Q ss_pred cccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCce
Q 002153 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGV 265 (959)
Q Consensus 186 ~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~ 265 (959)
|--....-..|...-+ .. ....|.|..+.... . +.+....+...|+....|..+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~----------------~~---~~G~~~~~~~~~~g--~-~~~~~~~d~~~r~w~~~a~~~~~~~ 137 (290)
T 3lib_A 80 PDAFDGKDAEYTNSPA----------------HD---GTGRFVPYWNKMNG--T-ASVAPLLHYDSSDYYQLPKATEKDV 137 (290)
T ss_dssp TTTTTSCHHHHTTSTT----------------CC---TTCCCCEEEECTTS--S-CEEEECSCTTTSHHHHHHHHHCSCE
T ss_pred CCCCCCCchhhcCCCC----------------CC---CCceEEEEEEecCC--e-EEEeecCCCCcchHHHHHHHcCCCE
Confidence 2221111111111000 01 11234443333211 1 1122234556788999999999999
Q ss_pred eeeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHH
Q 002153 266 LTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 320 (959)
Q Consensus 266 ~t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ 320 (959)
++.|+.- ++.+.+.+..|++.. ....|.++..++++.+.+.
T Consensus 138 ~s~p~~~--~~~~~i~~~~pi~~~------------g~~~Gvl~~~i~l~~l~~~ 178 (290)
T 3lib_A 138 LTEPYFY--EGVFMVSYVSPIMKE------------GEFAGIGGVDVSLEYVDEV 178 (290)
T ss_dssp ECCCEEE--TTEEEEEEEEEEEET------------TEEEEEEEEEEEHHHHHHH
T ss_pred EEcCEEe--CCeEEEEEEEEEEEC------------CEEEEEEEEEEeHHHHHHH
Confidence 9999874 567888889999852 1346999999999987654
No 259
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=95.29 E-value=0.68 Score=46.88 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=110.1
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeec
Q 002153 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186 (959)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~~~ 186 (959)
......+..++.+...++..|..+.+.++.....+..||..+. +.. |...+..+..+....+|.+.++.++-
T Consensus 6 ~~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~------~~~--~~~~~~~~L~~~~~~~~~~~~i~i~d 77 (217)
T 4dah_A 6 EKDTIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAID------RPV--DIKKMQSILEKTFDSEPRFSGLYFLN 77 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------SSC--CHHHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCC--CHHHHHHHHHHHHhcCCcccEEEEEC
Confidence 3455666777888888999999999999999999999998433 221 78889999998888889988877653
Q ss_pred ccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCcee
Q 002153 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (959)
Q Consensus 187 ~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~ 266 (959)
. -|..+.. ... ...++| ...|+...+|+.+|+.++
T Consensus 78 ~------------~G~~~~~---------------------------~~~--~~~~~~----~~~r~~f~~a~~~~~~~i 112 (217)
T 4dah_A 78 A------------KGDVTAS---------------------------TTE--LKTKVN----LADRSFFIKAKETKKTVI 112 (217)
T ss_dssp T------------TCBEEEE---------------------------SSC--CSSCCB----CTTSHHHHHHHHHCSCEE
T ss_pred C------------CCcEEEe---------------------------cCC--CCCCCC----cchhHHHHHHHhcCCcEE
Confidence 1 1211110 000 001333 345778888999999999
Q ss_pred eeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHHHHHHh
Q 002153 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 325 (959)
Q Consensus 267 t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ll~~~ 325 (959)
+.|+.-..++.+.+.+..|++..+ ..+.|.+++.++++.+.+. +..+
T Consensus 113 s~~~~~~~~g~~~i~ia~pi~~~~-----------g~~~Gvl~~~i~l~~l~~~-~~~~ 159 (217)
T 4dah_A 113 SDSYSSRITGQPIFTICVPVLDSK-----------RNVTDYLVAAIQIDYLKNL-INLL 159 (217)
T ss_dssp CCCEECTTTCSEEEEEEEEEECTT-----------SCEEEEEEEEEEHHHHHHH-HHHH
T ss_pred eceEEcCCCCCEEEEEEEEEECCC-----------CCEEEEEEEEEcHHHHHHH-HHhc
Confidence 999875556778889999998732 1346999999999987654 4444
No 260
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.20 E-value=0.015 Score=65.80 Aligned_cols=50 Identities=34% Similarity=0.563 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCccccC---CCCcCcCCC-ccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~~---~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||.+..+ -+|..+...+ ....+..+| .|.||+.+..+.+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 48999999999998843 3676544321 111222334 89999999888753
No 261
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.08 E-value=0.0077 Score=63.41 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCC---------------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS---------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s---------------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (959)
.|.|.|||+||+++++.+.|..+.+.+.. .....|..|+|++-+..+. -++.|.|....
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr~~~ 153 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHNN 153 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEeCCC
Confidence 58999999999999988777655432110 0001133688886544433 67888887653
No 262
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.07 E-value=0.014 Score=62.43 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEEEEcCCCCChhhHhhccCC--------cc---ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep--------F~---q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+++++..-+.. |. +.+.......|-.|+|++=|-. ..-++.|.|...
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~----vadkV~V~Sk~~ 162 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL----VADKVIVYTKNN 162 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc----ccCEEEEEEecC
Confidence 5899999999999986543311 11 1101122345778999865432 234567777654
No 263
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=95.03 E-value=0.043 Score=64.58 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC------------CCcCcCCCccchHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYL 684 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~------------s~s~~~~GtGLGLsI~k~L 684 (959)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 5899999999999997766654322210 1122346679998655444
No 264
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=94.99 E-value=0.0076 Score=63.88 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEEEEcCCCCChhhHhhccCCcccc----------CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQV----------GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~----------~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+++++..-|....+. +.......|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 58999999999999886555322110 001123456679998865322 23677777754
No 265
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=94.85 E-value=0.79 Score=47.55 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=113.7
Q ss_pred HHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeee
Q 002153 105 WYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAY 184 (959)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~ 184 (959)
|..+....+..++.....+...++.+.+.|+.....+..|+..+.. ...|...+..+..+.+..+|.+.++.+
T Consensus 3 ~~~r~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~-------~~~~~~~~~~~L~~~~~~~~~~~~i~i 75 (254)
T 3lif_A 3 YDSHKIALAQSETEMRNLSHSLAEHATHTFQGADVVLDDIVSFMKW-------RPHPSPVFNERLRALADNLPQLSDVAI 75 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSSCCTHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHhcCCccceEEE
Confidence 4556777788888889999999999999999999999999998764 235667788888888888999988877
Q ss_pred ecccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHH--cC
Q 002153 185 AVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARA--SG 262 (959)
Q Consensus 185 ~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~--tg 262 (959)
+-. .|. +.. ... ....++| +.+|+....|++ +|
T Consensus 76 ~d~------------~G~-~~~--------------------------s~~--~~~~~~~----~~~r~~f~~a~~~~~~ 110 (254)
T 3lif_A 76 LDA------------DGQ-LTY--------------------------ASV--KPVPALD----NSDRSYFRYHRANDDH 110 (254)
T ss_dssp ECT------------TSB-EEE--------------------------ESS--SSEECCB----CTTSHHHHHHHHCCCC
T ss_pred ECC------------CCC-Eec--------------------------CCC--CCCCCCC----cccHHHHHHHHhCCCC
Confidence 521 121 100 000 0012333 345788888988 78
Q ss_pred CceeeeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHHHHHHh
Q 002153 263 KGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 325 (959)
Q Consensus 263 ~~~~t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ll~~~ 325 (959)
+.+++.|+.-..++.+.+.+..|++..+ ..+.|++++.++++.+.+ ++..+
T Consensus 111 ~~~is~p~~~~~~g~~~i~~~~pi~~~~-----------g~~~Gvl~~~i~l~~l~~-~~~~~ 161 (254)
T 3lif_A 111 TLLITGPIQSRTSGVWVFVVSRRLETTD-----------GKFFGVVVATIESEYFST-FYKTF 161 (254)
T ss_dssp CCEEEEEEECTTTCCEEEEEEEEEECTT-----------CCEEEEEEEEECHHHHHH-HHTTS
T ss_pred CeEECCceecCCCCcEEEEEEeeeeCCC-----------CCEeEEEEEEECHHHHHH-HHHhc
Confidence 9999999985556778888999998632 124699999999987665 44444
No 266
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.046 Score=65.55 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHH
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSIS 681 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~ 681 (959)
.|+|.|||+||+++++..-+...-+.+. ......|..|+|++=+
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa 127 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL 127 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH
Confidence 5899999999999988766543321100 1112346678998544
No 267
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=94.57 E-value=0.86 Score=48.33 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeee--c
Q 002153 109 SQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA--V 186 (959)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~~--~ 186 (959)
....+..++.+...++..|..++..++.....++.||..+... ...|++.+..+..+.+..+|.+.++..+ |
T Consensus 8 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (291)
T 3li9_A 8 SQEEKLAYEKSIEMAGNYANQFDAQMEANQAIARTLACTMAEY------GSQDREEAMSIIKRILNENPQLIGVYLGYEP 81 (291)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCHHHHHHHHHHHHHTCTTCSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCCeEEEEEEEcC
Confidence 4445556677788899999999999999999999999987752 2357888999999999999999887554 1
Q ss_pred ccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCcee
Q 002153 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (959)
Q Consensus 187 ~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~ 266 (959)
......-..| .. .. .......|.|..+... ..+ .+....+...|+...+|..+|+.++
T Consensus 82 ~~~~~~~~~~----------~~------~~---~~~~~G~~~~~~~~~~--g~~-~~~~~~d~~~~~w~~~a~~~~~~~~ 139 (291)
T 3li9_A 82 DAFDGRDKNY----------IN------AP---GHDSTGRFVPYCNKIN--GPV-IIEPLVHYDSSDYYQLPKTTGKDTL 139 (291)
T ss_dssp TTTTSCGGGC----------TT------CT---TCCTTCCCCEEEECTT--SSC-EEEECCCTTTSHHHHHHHHHCSCEE
T ss_pred CCCCCCchhh----------cC------CC---CCCCCccEEEEEEecC--CeE-EEEecCCCccchHHHHHHHhCCCEE
Confidence 1111000000 00 00 0011223445333321 111 1222345566889999999999999
Q ss_pred eeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHH
Q 002153 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 320 (959)
Q Consensus 267 t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ 320 (959)
|.|+.- ++.+.+.+..|++.. ....|.++..++++.+.+.
T Consensus 140 s~p~~~--~~~~~i~~~~pi~~~------------g~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 140 TEPYFY--EGIFMVSYDSPIFKN------------GEFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CCCEEE--TTEEEEEEEEEEEET------------TEEEEEEEEEEECHHHHHH
T ss_pred EccEEe--CCEEEEEEEEEEEEC------------CEEEEEEEEEeeHHHHHHH
Confidence 999874 567888889999852 1346999999999886554
No 268
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=94.20 E-value=1.4 Score=45.89 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHhhhhhcCCCcceeeee--c
Q 002153 110 QATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSA-IDQMTFTRYTERTAFERPLTSGVAYA--V 186 (959)
Q Consensus 110 ~~~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~-id~~~f~~~~~~~~~~~p~~~~~~~~--~ 186 (959)
...+..++.+...++..+..++..++.....++.||..+.... .... .++..+..+..+.+..+|.+.++... +
T Consensus 5 ~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (274)
T 3lic_A 5 SIEKRLYENLAQESSHSASRLQFLLEHAQANTQGLSDFIGLLA---DKDDINNPEKLKTVLTNRIQRNPDFFGSAIAFKP 81 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CTTTTTCHHHHHHHHHHHHHHCTTCCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccccCCHHHHHHHHHHHHhcCcceeEEEEEecC
Confidence 4455666777888999999999999999999999999887531 1223 57888999999999999998766543 1
Q ss_pred ccCchhHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeecc---ccCcc--cHHHHHHHHHc
Q 002153 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM---LSGKE--DRENVLRARAS 261 (959)
Q Consensus 187 ~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~---~s~~~--~r~~i~~Ar~t 261 (959)
-..+ .. ..|.|..+..... +..-+. ..++. .|+....|+.+
T Consensus 82 ~~~~-----------------------------~~---~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~w~~~a~~~ 127 (274)
T 3lic_A 82 NTFP-----------------------------NK---KLFSPYVYRSGSG--FNYLDIGADGYDYTDGNWDWWSKAINQ 127 (274)
T ss_dssp TSST-----------------------------TC---SCBCEEEEECSSS--EEEEEHHHHTCCTTSSSCHHHHTTTTT
T ss_pred ccCC-----------------------------Cc---cccceeEEECCCc--eEEEeccccCCCCCCCCCcHHHHHHhc
Confidence 1100 00 3455554433221 111111 12344 78899999999
Q ss_pred CCceeeeceeecccC-CceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHH
Q 002153 262 GKGVLTAPFRLLKTN-RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 320 (959)
Q Consensus 262 g~~~~t~p~~l~~~~-~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ 320 (959)
|+.++|.|+.-..++ .+.+.+..|++..+ ...|.++..++++.+.+.
T Consensus 128 ~~~~~s~~~~~~~~~~~~~i~~~~pi~~~g------------~~~Gv~~~~i~l~~l~~~ 175 (274)
T 3lic_A 128 VGGYWSKAYFDEGAGNVLMITYAVPFGVQP------------DYFGVTTVDLALDRLPEQ 175 (274)
T ss_dssp SSCEECCCEECTTTTCSEEEEEEEEESCTT------------CCCEEEEEEEEGGGHHHH
T ss_pred CCCEEEeeEEcCCCCceEEEEEEEEEccCC------------EEEEEEEEEEEHHHHHHH
Confidence 999999999755444 47888889998621 236999999999886554
No 269
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=93.93 E-value=0.018 Score=60.30 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCChhhHhhccC--------Ccccc--CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFT--------PFMQV--GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFe--------pF~q~--~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+++++..-+. .|... +.......|..|+|++-+-.+ .-++.|.|..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~v----adkv~V~Sk~~ 154 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVVVITKHN 154 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCccccccccc----CCEEEEEEeeC
Confidence 589999999999998743221 12110 011223456789998865333 23566666543
No 270
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=93.87 E-value=0.036 Score=66.35 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCChhhHhhccCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTP 659 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep 659 (959)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999988766644
No 271
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=93.13 E-value=0.062 Score=64.05 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC------------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~------------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (959)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.++ -++.|.|...
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va----dkV~V~Sr~~ 144 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA----DKVTVRTRAA 144 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC----CeEEEEECCC
Confidence 5899999999999987665533221110 01112244688987555443 2566666653
No 272
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=92.88 E-value=0.14 Score=57.38 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHhcc
Q 002153 549 DPGRFRQIITNLMGNSIKFT 568 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT 568 (959)
|+..+..++.-||+||+...
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~ 46 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEA 46 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhHH
Confidence 66789999999999999864
No 273
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=91.39 E-value=0.085 Score=53.99 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCChhhH--------hhc-cCCccccCC---CCcCcCCCccchHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQ--------SRI-FTPFMQVGP---SISRTHGGTGIGLSISKYLVG 686 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~--------~~I-FepF~q~~~---s~s~~~~GtGLGLsI~k~LVe 686 (959)
.|+|.|+|.|||.+.. +.+ +.+....+- ......|=.|.||+.+..+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3899999999999874 332 344332110 001112336888988777653
No 274
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=90.37 E-value=0.32 Score=50.38 Aligned_cols=49 Identities=31% Similarity=0.466 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhhH--------hhccCCcccc---CCCCcCcC-CCccchHHHHHHHHHH
Q 002153 639 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTH-GGTGIGLSISKYLVGR 687 (959)
Q Consensus 639 i~V~DtG~GI~~e~~--------~~IFepF~q~---~~s~s~~~-~GtGLGLsI~k~LVe~ 687 (959)
|+|.|+|.|||.+.. +-+|...... +....... |=.|.|++.+..+-+.
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~ 129 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc
Confidence 899999999999864 2344221110 11111122 2378999988877653
No 275
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=90.25 E-value=0.25 Score=51.41 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCChhh-------HhhccCCcccc---CCCCcCc-CCCccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEA-------QSRIFTPFMQV---GPSISRT-HGGTGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~-------~~~IFepF~q~---~~s~s~~-~~GtGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||.+. .+-+|...... +...... .|=.|.|++.+..+-+.
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~ 133 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW 133 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc
Confidence 389999999999987 55556322211 1111112 23378999988777643
No 276
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=86.67 E-value=0.74 Score=52.23 Aligned_cols=67 Identities=21% Similarity=0.480 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHHcCCEEEEEEeC-CCcEEE
Q 002153 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGEIGFVSIP-NIGSTF 704 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~mgG~I~v~S~~-g~GttF 704 (959)
.|+|.|+|.|||.+..+. +|...... +....+..|| .|.|.+.|.-|-+. +.++... ..|-.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y 174 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKY 174 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEE
Confidence 489999999999886443 45333211 1111222233 79999988877654 3444442 235555
Q ss_pred EEEE
Q 002153 705 TFTA 708 (959)
Q Consensus 705 ~~~l 708 (959)
..+.
T Consensus 175 ~q~f 178 (418)
T 1pvg_A 175 VQKW 178 (418)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 277
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=86.04 E-value=0.9 Score=51.27 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCChhh--------HhhccCCcccc---CCCCcC-cCCCccchHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEA--------QSRIFTPFMQV---GPSISR-THGGTGIGLSISKYLVG 686 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IFepF~q~---~~s~s~-~~~GtGLGLsI~k~LVe 686 (959)
.|+|.|+|.|||.+. .+-+|....-. +....+ ..|=.|.|++.+..+-+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 489999999999986 33355422111 111111 22337999998877643
No 278
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=85.73 E-value=0.88 Score=46.25 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHhccC---CCcEEEEE
Q 002153 549 DPGRFRQIITNLMGNSIKFTE---KGHIFVTV 577 (959)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~---~G~I~v~v 577 (959)
++..+..++.-|+.||+...- ...|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 567788888888888887532 34555554
No 279
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=80.98 E-value=0.51 Score=53.26 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhhH--------hhccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHH
Q 002153 639 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 639 i~V~DtG~GI~~e~~--------~~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
|+|.|+|.|||.+.. +-+|...... +.......+| .|.|++.+.-|-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999874 2345222111 1111112233 78999988877644
No 280
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=80.62 E-value=0.76 Score=48.38 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCChhhHhhccCCcc-----------ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEe
Q 002153 638 IVSVEDTGQGIPLEAQSRIFTPFM-----------QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~-----------q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~ 697 (959)
.|+|.|||+||+++++..-+.... +.+.......|-.|+|++-|-. ..-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm----VAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL----VSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG----TEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec----cCCEEEEEEc
Confidence 589999999999998887553321 1111112234678999886532 2355666666
No 281
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=74.98 E-value=0.26 Score=50.41 Aligned_cols=90 Identities=7% Similarity=0.069 Sum_probs=52.9
Q ss_pred EEEEcCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEecCCCcccccccCCCCCCCcc
Q 002153 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844 (959)
Q Consensus 765 v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 844 (959)
|..+.++.+|++.+... .+|++++|..++..+. ...++.+++.... .+.++++.+.. ....... ...|...+
T Consensus 8 v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g---~~~~~~l~~~~~~-~~i~vi~~~~~-~~~~~~~-~~~Ga~~~ 79 (237)
T 3cwo_X 8 VDDATNGREAVEKYKEL--KPDIVTMDITMPEMNG---IDAIKEIMKIDPN-AKIIVCSAMGQ-QAMVIEA-IKAGAKDF 79 (237)
T ss_dssp EECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSH---HHHHHHHHHHSSS-CCEEEECCSST-HHHHHHH-HHTTCCEE
T ss_pred EEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCH---HHHHHHHHHhCCC-CCEEEEECCCC-HHHHHHH-HHCCHHhe
Confidence 44567788888877653 4789999988865432 4456666654322 23333333322 1111111 22367789
Q ss_pred ccCC--CChHHHHHHHHHHh
Q 002153 845 IMKP--LRSSMLAASLQRAM 862 (959)
Q Consensus 845 l~KP--l~~~~l~~~l~~~~ 862 (959)
+.|| +....+...+.+.+
T Consensus 80 l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 80 IVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp EESHHHHHCTHHHHHHHHHH
T ss_pred EeCCcccChHHHHHHHHHHh
Confidence 9998 66667777766655
No 282
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=67.07 E-value=1e+02 Score=30.33 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=85.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeecccCch
Q 002153 112 TEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRS 191 (959)
Q Consensus 112 ~~~~~~~~~~~~~~~a~~lq~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~~~~~~~~~p~~~~~~~~~~v~~~ 191 (959)
.+..++.+...++..+..|...++...+.+..++..... ++ +...+..+.+.....+ .+.++.++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~la~~~~~-----~~---~~~~~~~~l~~~~~~~-~~~~i~i~~----- 68 (240)
T 3c8c_A 3 RSMVSDSVDEIVDGVSKTTAEVINGRKSIAQYATSLIEN-----NP---EPDNVRTIISQPLIKN-TFLLVGFGL----- 68 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC---CHHHHHHHHSSHHHHH-HSSCEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----Cc---cHHHHHHHHHHHHhCC-CeeEEEEEE-----
Confidence 345566677888899999999999999999999877653 11 1122333333222211 222221110
Q ss_pred hHHHHHHHhccceeecccCCCCCCCCCCCCCCCCcccceEEecCCcceeEeeccccCcccHHHHHHHHHcCCceeeecee
Q 002153 192 EREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFR 271 (959)
Q Consensus 192 ~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~ 271 (959)
. +.+ . +++..+......++ ++..|+....|..+|+.+++.|+.
T Consensus 69 ----------------~-----------~~G--~----~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~s~~~~ 111 (240)
T 3c8c_A 69 ----------------E-----------KDG--S----NINNDPSWNPGPTW----DPRVRPWYKDAKNAGKLVITAPYA 111 (240)
T ss_dssp ----------------T-----------TTC--C----EEESCTTCCCCSSC----CGGGSHHHHHHHHHTSCEECCCEE
T ss_pred ----------------c-----------CCc--e----EEecCCCCCCCCCC----CcccChHHHHHHhcCCcEEeeceE
Confidence 0 000 0 00000000000122 345678888888889999999987
Q ss_pred ecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHH
Q 002153 272 LLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 320 (959)
Q Consensus 272 l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ 320 (959)
-..++.+.+.+..|++..+ .....|+++..++++.+.+.
T Consensus 112 ~~~~~~~~i~~~~pi~~~~----------~g~~~Gvl~~~i~~~~l~~~ 150 (240)
T 3c8c_A 112 DSASGEILVSVATPVKDSA----------TGQFLGSIFYDVSLAELAEL 150 (240)
T ss_dssp CTTTCCEEEEEEEEEECTT----------TCCEEEEEEEEECHHHHHHH
T ss_pred cCCCCeEEEEEEEEEEECC----------CCeEEEEEEEEEEHHHHHHH
Confidence 4445567888889998631 01236999999999887653
No 283
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=61.17 E-value=7.5 Score=49.70 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCChhhH--------hhccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHH
Q 002153 638 IVSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (959)
Q Consensus 638 ~i~V~DtG~GI~~e~~--------~~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (959)
.|+|.|+|.|||-+.. +-||...... +.......|| .|.|.+.|.-|-+.
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 3899999999997643 2344433221 1111222233 79999998877543
No 284
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=48.52 E-value=7.3 Score=41.15 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=36.5
Q ss_pred CEEEEEeCC--HHHHHHHHHHHhhCCCEEEEEcChHH--HHHHhCCCCCccEEEEc
Q 002153 887 RKILIVDDN--NVNLKVAAAGLKRYGAAVVCVERGKK--ATELLMPPHQFDACFMD 938 (959)
Q Consensus 887 ~~ILivdDn--~~~~~~l~~~L~~~g~~v~~a~~g~e--al~~~~~~~~~DlilmD 938 (959)
+++|||+++ +.-...+..+|+..||+|+......- -.+.+ ..||+||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L---~~yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL---AKQDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH---HTCSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH---hcCCEEEEc
Confidence 589999988 56778899999999999998765432 11233 259999886
No 285
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=46.99 E-value=7 Score=47.46 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHH
Q 002153 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYLFCF 951 (959)
Q Consensus 900 ~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi~MP~mdG~e~~~ 951 (959)
+.|...|++.||+|..+.|+++|+..+.....++.|++|+.|+ +.++|+
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~ 68 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCE 68 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHH
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHH
Confidence 3456889999999999999999999996545689999999987 455554
No 286
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=42.48 E-value=66 Score=34.46 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHcCCceeeeceeecccCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHHHHHHH
Q 002153 248 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLL 322 (959)
Q Consensus 248 ~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ll 322 (959)
+...|.-..+|++.+..+.+. +. ..++.+++.+..||+.. ....|.++..++++.+.+.+.
T Consensus 141 d~~~R~yf~~Al~g~~~~~~~-~~-~~tg~~~i~~a~PV~~~------------G~viGVv~v~i~l~~l~~~~~ 201 (305)
T 3e4o_A 141 DYAFRDYFRLAVRDGMAEHFA-MG-TVSKRPGLYISRRVDGP------------GGPLGVIVAKLEFDGVEADWQ 201 (305)
T ss_dssp BCTTSHHHHHHHHHSEEEEEE-EC-TTTCCEEEEEEEEEEET------------TEEEEEEEEEECCHHHHHHHH
T ss_pred CccccHHHHHHHhcCCcEEEE-Ee-cCCCCEEEEEEEEEccC------------CeEEEEEEEEEcHHHHHHHHh
Confidence 335577778888776655432 11 12467899999999852 134699999999998776543
No 287
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=36.79 E-value=33 Score=36.50 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCC-CCCccEEEEcCCCC
Q 002153 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMP 942 (959)
Q Consensus 885 ~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~-~~~~DlilmDi~MP 942 (959)
.+.++..||-++.....++.-++...-..+...|+.+++..+.+ ..++|+||+|----
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence 45789999999999999998887654444556788898887643 23699999997554
No 288
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.99 E-value=1.3e+02 Score=26.20 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHh
Q 002153 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926 (959)
Q Consensus 889 ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~ 926 (959)
+|+-|.++.-....+.-++..||+|.-+.+.++|+..+
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 45556666667778888899999999999999999876
No 289
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.98 E-value=1.4e+02 Score=30.98 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 002153 672 GGTGIGLSISKYLVGR 687 (959)
Q Consensus 672 ~GtGLGLsI~k~LVe~ 687 (959)
++.|||.+|++.+++.
T Consensus 17 as~GIG~aia~~la~~ 32 (255)
T 4g81_D 17 SARGLGFAYAEGLAAA 32 (255)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHC
Confidence 5689999999999964
No 290
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=24.72 E-value=4.2e+02 Score=27.61 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=42.4
Q ss_pred cCcccHHHHHHHHHc--CCceeeeceeecc-------cCCceeEEEEEeeccCCCCCCChhHHHhhhcceeeeeeeHHHH
Q 002153 247 SGKEDRENVLRARAS--GKGVLTAPFRLLK-------TNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESL 317 (959)
Q Consensus 247 s~~~~r~~i~~Ar~t--g~~~~t~p~~l~~-------~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l 317 (959)
.++..|.-...|... |+.. +.|+.+-. ...+++.+..||+.. ....|++..-++++.+
T Consensus 111 ~n~~~R~yf~~a~~~~~~~~~-~s~~~~~~~~g~~~~~~~p~i~~a~pV~~~------------g~~~GVlv~~i~l~~l 177 (295)
T 3lid_A 111 RDKSAREYFKYAQSLDNEQIS-AWGIELERDKGELVYPLSPSLRILMPISVN------------DVRQGYLVLNVDIEYL 177 (295)
T ss_dssp CBCTTSHHHHHHHHSCTTCCE-ECCCEECEETTEECSSCCEEEEEEEEEEET------------TEEEEEEEEEEEHHHH
T ss_pred ccchhhHHHHHHhcCCCCcEE-EeCceecccCCcccCCCCCEEEEEEEEccC------------CeEEEEEEEEecHHHH
Confidence 466678888888875 4444 44544321 346889999999742 1346999999999988
Q ss_pred HHHH
Q 002153 318 VEKL 321 (959)
Q Consensus 318 ~~~l 321 (959)
.+.+
T Consensus 178 ~~~~ 181 (295)
T 3lid_A 178 SSLL 181 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 291
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=24.25 E-value=84 Score=28.59 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=41.2
Q ss_pred hccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcC
Q 002153 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939 (959)
Q Consensus 882 ~~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi 939 (959)
+++.|-.+|+-=-++..++++...|..+|.++..+... . ....||+.+.|-
T Consensus 3 kLLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~-~~~eyDi~lTDn 53 (117)
T 2kx7_A 3 RLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------L-ISQDYDIFLTDN 53 (117)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------S-SCCCCSEEEEES
T ss_pred ccccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------C-CCCcccEEEecC
Confidence 35677889999999999999999999999988876432 1 235799999984
No 292
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=22.97 E-value=1.1e+02 Score=31.74 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.5
Q ss_pred CCccchHHHHHHHHHHcCCEEEE
Q 002153 672 GGTGIGLSISKYLVGRMKGEIGF 694 (959)
Q Consensus 672 ~GtGLGLsI~k~LVe~mgG~I~v 694 (959)
++.|||.+|++.+++. |.++-+
T Consensus 15 as~GIG~aiA~~la~~-Ga~Vv~ 36 (254)
T 4fn4_A 15 AGSGIGRAIAKKFALN-DSIVVA 36 (254)
T ss_dssp TTSHHHHHHHHHHHHT-TCEEEE
T ss_pred CCCHHHHHHHHHHHHc-CCEEEE
Confidence 5689999999999853 555443
No 293
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=21.11 E-value=1.4e+02 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGA 911 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~ 911 (959)
+.+|.-||-|+.....++..|++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999986
No 294
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=21.02 E-value=1.2e+02 Score=29.65 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=33.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEcCh---HHHHHHhCCCCCccEEEE
Q 002153 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFM 937 (959)
Q Consensus 888 ~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g---~eal~~~~~~~~~Dlilm 937 (959)
+|+|||--......+...|++.|+++..+.+. ++..+.+.....+++||+
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~ 54 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLS 54 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEEC
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEEC
Confidence 79999955445566688889999999988876 444344422123456654
No 295
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=21.01 E-value=1.5e+02 Score=29.76 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE---EEE-EcChHHHHHHhCCCCCccEEEEcCCCC
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA---VVC-VERGKKATELLMPPHQFDACFMDIQMP 942 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~---v~~-a~~g~eal~~~~~~~~~DlilmDi~MP 942 (959)
+.+|..+|-++.....++..+++.|.. +.. ..+..+.+..+. ...||+|++|...+
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-~~~fD~V~~d~~~~ 140 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-NDSYQLVFGQVSPM 140 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-TTCEEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-CCCcCeEEEcCcHH
Confidence 458999999999999999999988865 544 334444444332 36799999997654
No 296
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.87 E-value=1.1e+02 Score=32.52 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=39.7
Q ss_pred CEEEEEeCC-----HHHHHHHHHHHhhCC-CEEEEEcChH-----HHHHHhCCCCCccEEEEcCCCCCCCH
Q 002153 887 RKILIVDDN-----NVNLKVAAAGLKRYG-AAVVCVERGK-----KATELLMPPHQFDACFMDIQMPEMDG 946 (959)
Q Consensus 887 ~~ILivdDn-----~~~~~~l~~~L~~~g-~~v~~a~~g~-----eal~~~~~~~~~DlilmDi~MP~mdG 946 (959)
.+|||+.-. +.....+..+|++.| |+|+++.+.. +.+.. .=..||+|+++..+...+-
T Consensus 5 ~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~--~L~~~D~vV~~~~~~~l~~ 73 (281)
T 4e5v_A 5 IKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL--DFSPYQLVVLDYNGDSWPE 73 (281)
T ss_dssp EEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC--CCTTCSEEEECCCSSCCCH
T ss_pred eEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh--hhhcCCEEEEeCCCCcCCH
Confidence 478888663 445578889999998 9999998741 22211 1136999999887655443
No 297
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=20.46 E-value=1.8e+02 Score=27.82 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=40.4
Q ss_pred ccCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcC
Q 002153 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939 (959)
Q Consensus 883 ~~~~~~ILivdDn~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~~DlilmDi 939 (959)
.+.|++|-++..... ...|++.|..+..+.+..+++.++. ....|++++|.
T Consensus 109 dL~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~-~g~~D~~~~~~ 159 (228)
T 2pyy_A 109 DLPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ-TKKADAVVFDA 159 (228)
T ss_dssp GCTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH-TTSSSEEEEEH
T ss_pred HcCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH-cCCCCEEEecH
Confidence 357889988877652 3456667899999999999999996 47899999874
No 298
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=20.26 E-value=1.9e+02 Score=29.30 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEcChHHHHHHhCCCCCccEEEEcCCC
Q 002153 886 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPPHQFDACFMDIQM 941 (959)
Q Consensus 886 ~~~ILivdDn~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~~~~~~~~DlilmDi~M 941 (959)
+.+|..+|-++.....++..+++.|.. +. ...+..+.+..+.....||+|++|...
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~ 146 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK 146 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch
Confidence 458999999999999999999887753 33 456666656655323479999999853
Done!