Query 002154
Match_columns 959
No_of_seqs 497 out of 4098
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 17:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-90 4.4E-95 816.8 43.6 775 3-836 2-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.4E-64 2E-68 626.2 48.3 677 163-937 182-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.2E-43 6.9E-48 379.1 14.0 280 170-457 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.2E-22 2.7E-27 256.5 18.1 297 606-934 155-464 (968)
5 PLN00113 leucine-rich repeat r 99.9 2E-22 4.4E-27 254.5 17.2 359 531-934 118-487 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.4E-24 7.4E-29 228.1 -5.0 337 532-935 33-375 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 4.6E-23 9.9E-28 219.6 -5.9 322 531-915 55-379 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.4E-19 3E-24 228.3 19.7 340 531-936 589-944 (1153)
9 KOG4194 Membrane glycoprotein 99.8 6.5E-20 1.4E-24 195.0 4.7 319 556-931 123-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 8.3E-21 1.8E-25 193.2 -7.0 200 534-756 71-289 (565)
11 KOG4194 Membrane glycoprotein 99.8 4.5E-19 9.8E-24 188.6 5.0 323 559-934 79-428 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 9.9E-20 2.2E-24 185.4 -11.7 330 553-932 63-468 (565)
13 KOG0618 Serine/threonine phosp 99.6 5.5E-17 1.2E-21 182.5 -2.4 84 533-632 47-130 (1081)
14 KOG0618 Serine/threonine phosp 99.6 4.2E-17 9E-22 183.4 -6.3 159 782-953 240-481 (1081)
15 KOG4658 Apoptotic ATPase [Sign 99.5 8.3E-15 1.8E-19 175.1 5.6 344 556-954 521-881 (889)
16 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.3E-18 159.0 12.6 256 586-934 202-457 (788)
17 PRK04841 transcriptional regul 99.4 9.8E-12 2.1E-16 156.7 25.8 295 164-506 13-332 (903)
18 PRK00411 cdc6 cell division co 99.4 7.1E-11 1.5E-15 133.3 30.1 317 163-496 28-375 (394)
19 PRK15387 E3 ubiquitin-protein 99.3 4.7E-12 1E-16 148.3 12.4 97 559-681 223-319 (788)
20 KOG0617 Ras suppressor protein 99.3 3.8E-14 8.2E-19 128.2 -5.2 151 556-723 31-182 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 2.9E-12 6.3E-17 151.2 8.1 91 586-694 179-269 (754)
22 TIGR02928 orc1/cdc6 family rep 99.3 3.2E-09 6.9E-14 118.6 30.0 304 163-482 13-351 (365)
23 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 146.5 9.9 244 534-877 181-424 (754)
24 TIGR03015 pepcterm_ATPase puta 99.2 7.2E-10 1.6E-14 118.1 21.3 184 191-380 42-242 (269)
25 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.7E-18 122.4 -5.1 159 613-826 31-189 (264)
26 COG2909 MalT ATP-dependent tra 99.2 2.6E-09 5.7E-14 121.4 22.8 299 164-508 18-340 (894)
27 PF01637 Arch_ATPase: Archaeal 99.2 1.1E-10 2.3E-15 121.8 9.7 194 167-375 1-233 (234)
28 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 126.5 0.4 268 558-877 67-355 (498)
29 PRK00080 ruvB Holliday junctio 99.1 9.1E-10 2E-14 120.1 14.1 280 164-482 24-311 (328)
30 TIGR00635 ruvB Holliday juncti 99.1 6.3E-10 1.4E-14 120.7 12.8 277 165-481 4-289 (305)
31 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.2E-14 105.6 10.4 144 193-343 1-163 (166)
32 PTZ00112 origin recognition co 99.0 1.6E-07 3.4E-12 107.8 25.5 306 163-481 753-1086(1164)
33 COG3899 Predicted ATPase [Gene 98.9 1.6E-08 3.5E-13 122.2 17.6 317 167-507 2-387 (849)
34 cd00116 LRR_RI Leucine-rich re 98.9 7.9E-11 1.7E-15 129.3 -3.6 93 578-673 16-118 (319)
35 cd00116 LRR_RI Leucine-rich re 98.8 1.6E-09 3.5E-14 118.9 2.7 118 555-674 20-148 (319)
36 KOG4341 F-box protein containi 98.8 2.5E-10 5.4E-15 118.6 -3.4 309 585-958 138-456 (483)
37 COG2256 MGS1 ATPase related to 98.8 1.9E-07 4.2E-12 97.7 16.5 173 164-373 29-209 (436)
38 KOG4237 Extracellular matrix p 98.7 1.3E-09 2.9E-14 112.3 -1.4 252 531-820 67-357 (498)
39 PRK13342 recombination factor 98.7 2.8E-07 6.1E-12 103.7 16.6 180 165-379 12-199 (413)
40 PRK06893 DNA replication initi 98.7 2.8E-07 6.1E-12 94.7 14.1 156 192-380 39-207 (229)
41 KOG0532 Leucine-rich repeat (L 98.6 1.9E-09 4E-14 116.3 -4.8 172 559-755 76-247 (722)
42 PTZ00202 tuzin; Provisional 98.6 7.2E-06 1.6E-10 87.8 21.5 172 158-343 255-434 (550)
43 PRK05564 DNA polymerase III su 98.5 1.6E-06 3.5E-11 94.0 16.2 179 165-375 4-189 (313)
44 PRK14961 DNA polymerase III su 98.5 1.9E-06 4.1E-11 95.1 16.9 196 165-376 16-220 (363)
45 PF14580 LRR_9: Leucine-rich r 98.5 2.5E-08 5.5E-13 95.8 1.7 127 556-698 17-151 (175)
46 PF14580 LRR_9: Leucine-rich r 98.5 9E-08 1.9E-12 92.1 5.3 107 582-700 16-126 (175)
47 TIGR03420 DnaA_homol_Hda DnaA 98.5 8.5E-07 1.8E-11 91.7 13.0 171 170-379 22-204 (226)
48 PRK14963 DNA polymerase III su 98.5 3.1E-07 6.8E-12 104.4 10.1 206 165-380 14-222 (504)
49 PRK12402 replication factor C 98.5 1.3E-06 2.8E-11 96.5 14.5 201 165-376 15-226 (337)
50 PF05496 RuvB_N: Holliday junc 98.5 8.4E-07 1.8E-11 87.0 11.1 181 165-380 24-225 (233)
51 PF13401 AAA_22: AAA domain; P 98.5 2.5E-07 5.4E-12 86.4 7.3 117 191-312 3-125 (131)
52 PRK04195 replication factor C 98.5 1.4E-05 3E-10 91.9 23.0 246 165-455 14-271 (482)
53 COG1474 CDC6 Cdc6-related prot 98.5 9.9E-06 2.1E-10 88.3 20.4 208 165-377 17-239 (366)
54 PRK14960 DNA polymerase III su 98.5 2.5E-06 5.3E-11 97.1 16.1 196 165-376 15-219 (702)
55 PRK07003 DNA polymerase III su 98.5 7.6E-06 1.7E-10 94.2 19.8 200 165-380 16-225 (830)
56 PRK14949 DNA polymerase III su 98.5 4.9E-07 1.1E-11 105.8 10.5 197 165-377 16-221 (944)
57 PF13173 AAA_14: AAA domain 98.5 3.7E-07 8E-12 84.5 7.3 120 192-335 2-127 (128)
58 cd01128 rho_factor Transcripti 98.4 3.6E-07 7.8E-12 93.8 7.3 92 191-284 15-114 (249)
59 COG4886 Leucine-rich repeat (L 98.4 1.2E-07 2.5E-12 107.3 4.1 107 581-697 112-219 (394)
60 PRK14956 DNA polymerase III su 98.4 9.3E-07 2E-11 97.8 10.5 194 165-374 18-220 (484)
61 TIGR02903 spore_lon_C ATP-depe 98.4 5.3E-05 1.1E-09 89.1 25.2 173 165-344 154-367 (615)
62 PRK05896 DNA polymerase III su 98.4 2.8E-06 6.2E-11 96.6 13.8 198 165-378 16-223 (605)
63 PRK12323 DNA polymerase III su 98.4 3.3E-06 7.2E-11 95.8 14.1 201 165-376 16-225 (700)
64 PRK00440 rfc replication facto 98.4 7.2E-06 1.6E-10 89.8 16.3 180 165-373 17-200 (319)
65 PF13191 AAA_16: AAA ATPase do 98.4 8.6E-07 1.9E-11 88.5 8.2 48 166-216 1-48 (185)
66 PRK14957 DNA polymerase III su 98.4 9.6E-06 2.1E-10 92.5 17.4 188 165-380 16-225 (546)
67 cd00009 AAA The AAA+ (ATPases 98.4 2E-06 4.3E-11 82.2 10.1 124 168-313 1-130 (151)
68 PRK06645 DNA polymerase III su 98.4 3E-06 6.5E-11 95.9 12.8 196 165-373 21-226 (507)
69 COG3903 Predicted ATPase [Gene 98.4 9.2E-07 2E-11 93.5 7.8 293 191-507 13-315 (414)
70 PRK09112 DNA polymerase III su 98.3 7.7E-06 1.7E-10 88.8 15.0 200 164-377 22-241 (351)
71 KOG2028 ATPase related to the 98.3 8.3E-06 1.8E-10 83.8 13.8 158 190-371 160-331 (554)
72 PRK14964 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.3 16.2 182 165-374 13-215 (491)
73 PLN03025 replication factor C 98.3 7.7E-06 1.7E-10 88.9 14.4 183 165-374 13-198 (319)
74 PRK13341 recombination factor 98.3 5.3E-06 1.2E-10 98.1 13.5 175 165-373 28-214 (725)
75 PRK08727 hypothetical protein; 98.3 1.4E-05 3E-10 82.3 15.1 149 192-373 41-201 (233)
76 PRK08691 DNA polymerase III su 98.3 7E-06 1.5E-10 94.4 13.7 196 165-376 16-220 (709)
77 TIGR02397 dnaX_nterm DNA polym 98.3 1.4E-05 3.1E-10 88.9 15.8 184 165-377 14-219 (355)
78 PRK07994 DNA polymerase III su 98.3 8.3E-06 1.8E-10 94.4 14.1 197 165-377 16-221 (647)
79 PRK14962 DNA polymerase III su 98.3 2.3E-06 5E-11 96.5 9.3 202 165-394 14-240 (472)
80 TIGR00678 holB DNA polymerase 98.3 1.6E-05 3.5E-10 79.2 14.4 92 271-372 94-187 (188)
81 PRK07471 DNA polymerase III su 98.3 1.1E-05 2.4E-10 88.2 13.7 200 165-377 19-239 (365)
82 PRK14951 DNA polymerase III su 98.3 1.4E-05 3.1E-10 92.3 15.2 199 165-376 16-225 (618)
83 PRK14955 DNA polymerase III su 98.2 1.3E-05 2.9E-10 89.5 14.1 201 165-374 16-226 (397)
84 PRK14958 DNA polymerase III su 98.2 1E-05 2.3E-10 92.4 12.5 183 165-375 16-219 (509)
85 PRK14950 DNA polymerase III su 98.2 1.9E-05 4.1E-10 92.7 14.5 198 165-377 16-222 (585)
86 PRK07940 DNA polymerase III su 98.2 3.2E-05 7E-10 85.2 15.2 195 165-376 5-213 (394)
87 PRK09376 rho transcription ter 98.2 3.1E-06 6.8E-11 90.3 6.7 102 175-283 157-266 (416)
88 PRK14969 DNA polymerase III su 98.2 3E-05 6.5E-10 89.3 15.1 187 165-379 16-224 (527)
89 PRK08084 DNA replication initi 98.1 6.8E-05 1.5E-09 77.3 16.1 156 192-380 45-213 (235)
90 PLN03150 hypothetical protein; 98.1 4.8E-06 1E-10 98.7 8.6 93 587-685 420-512 (623)
91 KOG2120 SCF ubiquitin ligase, 98.1 6.6E-08 1.4E-12 96.3 -5.9 140 709-879 229-374 (419)
92 PRK09111 DNA polymerase III su 98.1 3.3E-05 7.1E-10 89.6 14.9 200 165-377 24-234 (598)
93 KOG1259 Nischarin, modulator o 98.1 4.6E-07 9.9E-12 90.3 -0.3 109 777-909 301-410 (490)
94 KOG0532 Leucine-rich repeat (L 98.1 1.5E-07 3.3E-12 101.9 -4.1 190 588-819 78-270 (722)
95 KOG3207 Beta-tubulin folding c 98.1 3.6E-07 7.8E-12 96.1 -1.3 61 778-839 266-333 (505)
96 PRK08903 DnaA regulatory inact 98.1 3.5E-05 7.6E-10 79.5 13.4 153 191-380 41-203 (227)
97 KOG3207 Beta-tubulin folding c 98.1 1.7E-06 3.6E-11 91.2 3.5 208 531-753 121-337 (505)
98 TIGR01242 26Sp45 26S proteasom 98.1 3E-05 6.4E-10 86.0 13.5 181 163-370 120-328 (364)
99 PRK14954 DNA polymerase III su 98.1 7E-05 1.5E-09 87.0 16.4 204 165-377 16-230 (620)
100 KOG1259 Nischarin, modulator o 98.1 8E-07 1.7E-11 88.6 0.4 126 556-697 282-409 (490)
101 PRK05642 DNA replication initi 98.1 6.9E-05 1.5E-09 77.2 14.5 156 192-380 45-212 (234)
102 PRK14970 DNA polymerase III su 98.1 8.7E-05 1.9E-09 82.7 16.5 186 165-378 17-212 (367)
103 KOG1909 Ran GTPase-activating 98.1 1.5E-06 3.3E-11 89.1 2.2 246 556-843 28-309 (382)
104 TIGR00767 rho transcription te 98.1 7.8E-06 1.7E-10 87.9 7.6 93 191-284 167-266 (415)
105 PRK09087 hypothetical protein; 98.1 3.7E-05 8E-10 78.4 12.0 144 192-378 44-197 (226)
106 PRK14959 DNA polymerase III su 98.1 6.5E-05 1.4E-09 86.3 15.1 200 165-380 16-225 (624)
107 PRK07764 DNA polymerase III su 98.1 6.1E-05 1.3E-09 90.4 15.5 200 165-380 15-226 (824)
108 KOG2227 Pre-initiation complex 98.0 0.00014 3E-09 78.1 16.1 213 163-378 148-374 (529)
109 PRK14953 DNA polymerase III su 98.0 0.00017 3.7E-09 82.0 18.0 185 165-377 16-221 (486)
110 PRK14952 DNA polymerase III su 98.0 0.00012 2.6E-09 84.5 16.8 201 165-381 13-225 (584)
111 PF13855 LRR_8: Leucine rich r 98.0 6.1E-06 1.3E-10 64.9 4.4 56 616-673 2-59 (61)
112 PRK11331 5-methylcytosine-spec 98.0 2.1E-05 4.5E-10 86.2 9.8 122 165-298 175-298 (459)
113 KOG4341 F-box protein containi 98.0 3.4E-07 7.5E-12 95.7 -3.8 267 615-939 138-418 (483)
114 PRK07133 DNA polymerase III su 98.0 8.5E-05 1.8E-09 86.7 15.0 196 165-377 18-221 (725)
115 PF13855 LRR_8: Leucine rich r 98.0 5.3E-06 1.2E-10 65.2 3.6 58 585-650 1-60 (61)
116 PF14516 AAA_35: AAA-like doma 98.0 0.00037 8E-09 75.8 19.1 204 163-383 9-246 (331)
117 PRK08451 DNA polymerase III su 98.0 2.7E-05 5.9E-10 88.3 10.5 197 165-377 14-219 (535)
118 COG4886 Leucine-rich repeat (L 98.0 6.8E-06 1.5E-10 92.9 5.3 174 556-753 114-288 (394)
119 CHL00181 cbbX CbbX; Provisiona 98.0 0.00025 5.4E-09 75.1 16.5 135 193-345 60-211 (287)
120 PF05673 DUF815: Protein of un 98.0 0.00026 5.6E-09 70.8 15.3 126 160-314 22-152 (249)
121 PRK06305 DNA polymerase III su 97.9 0.00015 3.2E-09 82.0 15.4 185 165-378 17-225 (451)
122 PHA02544 44 clamp loader, smal 97.9 7.5E-05 1.6E-09 81.5 12.8 148 165-341 21-171 (316)
123 PRK14087 dnaA chromosomal repl 97.9 0.00013 2.8E-09 82.4 14.9 170 192-379 141-322 (450)
124 PF00308 Bac_DnaA: Bacterial d 97.9 0.00013 2.7E-09 74.3 13.2 186 166-378 10-210 (219)
125 PRK14971 DNA polymerase III su 97.9 0.00022 4.9E-09 83.5 16.8 180 165-373 17-219 (614)
126 PLN03150 hypothetical protein; 97.9 1.4E-05 3E-10 94.8 6.8 106 560-675 420-527 (623)
127 KOG1909 Ran GTPase-activating 97.9 2E-06 4.3E-11 88.3 -0.7 86 581-673 26-130 (382)
128 PRK14948 DNA polymerase III su 97.9 0.00017 3.7E-09 84.4 14.8 199 165-377 16-223 (620)
129 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4E-10 56.7 4.1 39 616-656 2-40 (44)
130 PRK03992 proteasome-activating 97.9 7.9E-05 1.7E-09 82.9 11.3 180 163-369 129-336 (389)
131 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.7E-09 89.1 13.4 155 165-342 187-362 (852)
132 COG0466 Lon ATP-dependent Lon 97.8 0.00033 7.2E-09 79.4 15.4 167 163-343 321-508 (782)
133 KOG2120 SCF ubiquitin ligase, 97.8 1.5E-06 3.2E-11 86.9 -2.7 82 585-673 185-270 (419)
134 COG2255 RuvB Holliday junction 97.8 0.00019 4.1E-09 72.1 11.9 181 165-380 26-227 (332)
135 PRK06647 DNA polymerase III su 97.8 0.00037 8E-09 80.7 16.4 196 165-376 16-220 (563)
136 KOG2543 Origin recognition com 97.8 0.00083 1.8E-08 70.4 17.1 170 163-342 4-192 (438)
137 KOG0989 Replication factor C, 97.8 5.5E-05 1.2E-09 76.7 8.2 190 165-376 36-231 (346)
138 PRK05707 DNA polymerase III su 97.8 0.00022 4.7E-09 77.0 13.1 97 272-376 105-203 (328)
139 PRK10787 DNA-binding ATP-depen 97.8 0.00067 1.5E-08 81.8 18.4 166 164-343 321-506 (784)
140 PF05621 TniB: Bacterial TniB 97.8 0.001 2.3E-08 68.9 17.0 197 172-374 44-259 (302)
141 PRK14965 DNA polymerase III su 97.8 0.00041 8.9E-09 81.1 15.8 199 165-379 16-224 (576)
142 TIGR02880 cbbX_cfxQ probable R 97.8 0.00033 7.2E-09 74.3 13.8 133 194-344 60-209 (284)
143 TIGR02881 spore_V_K stage V sp 97.8 0.00022 4.7E-09 75.1 11.9 161 166-344 7-192 (261)
144 COG3267 ExeA Type II secretory 97.7 0.0024 5.2E-08 63.7 17.6 184 191-379 50-248 (269)
145 PRK05563 DNA polymerase III su 97.7 0.0007 1.5E-08 78.8 16.1 194 165-374 16-218 (559)
146 TIGR02639 ClpA ATP-dependent C 97.7 0.00028 6.1E-09 85.4 12.8 156 166-343 183-358 (731)
147 TIGR00362 DnaA chromosomal rep 97.7 0.00093 2E-08 75.4 15.9 159 192-374 136-308 (405)
148 PRK06620 hypothetical protein; 97.6 0.0012 2.6E-08 66.8 14.8 135 193-374 45-187 (214)
149 TIGR03689 pup_AAA proteasome A 97.6 0.00076 1.6E-08 76.3 14.5 168 165-343 182-378 (512)
150 PRK07399 DNA polymerase III su 97.6 0.00079 1.7E-08 72.2 14.1 200 165-377 4-222 (314)
151 PRK12422 chromosomal replicati 97.6 0.0014 3E-08 73.9 16.6 154 192-369 141-306 (445)
152 CHL00095 clpC Clp protease ATP 97.6 0.0004 8.7E-09 85.2 13.4 154 166-341 180-352 (821)
153 KOG2004 Mitochondrial ATP-depe 97.6 0.0013 2.9E-08 74.2 15.8 167 163-343 409-596 (906)
154 PRK14086 dnaA chromosomal repl 97.6 0.0027 5.7E-08 73.0 18.5 157 193-373 315-485 (617)
155 COG0593 DnaA ATPase involved i 97.6 0.0043 9.2E-08 67.7 19.1 138 191-347 112-261 (408)
156 PF12799 LRR_4: Leucine Rich r 97.6 6.7E-05 1.5E-09 53.8 3.6 41 585-633 1-41 (44)
157 PRK15386 type III secretion pr 97.6 9.4E-05 2E-09 80.2 6.4 66 778-850 47-112 (426)
158 TIGR00763 lon ATP-dependent pr 97.6 0.001 2.2E-08 81.1 16.1 165 165-343 320-505 (775)
159 PRK14088 dnaA chromosomal repl 97.6 0.00063 1.4E-08 76.9 13.3 159 192-373 130-302 (440)
160 PRK00149 dnaA chromosomal repl 97.6 0.00088 1.9E-08 76.6 14.1 160 191-374 147-320 (450)
161 PF00004 AAA: ATPase family as 97.5 0.0002 4.3E-09 66.7 6.5 21 195-215 1-21 (132)
162 KOG0531 Protein phosphatase 1, 97.5 2.1E-05 4.7E-10 89.0 -0.5 102 581-694 91-193 (414)
163 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.2E-10 90.3 -1.9 212 583-840 70-285 (414)
164 PTZ00361 26 proteosome regulat 97.4 0.0012 2.7E-08 73.5 12.4 179 165-370 183-389 (438)
165 KOG0991 Replication factor C, 97.4 0.0014 3E-08 63.8 10.9 45 164-214 26-70 (333)
166 KOG3665 ZYG-1-like serine/thre 97.4 8.2E-05 1.8E-09 87.9 3.2 135 615-753 122-261 (699)
167 COG1373 Predicted ATPase (AAA+ 97.4 0.0024 5.2E-08 71.1 14.0 147 194-375 39-191 (398)
168 PRK08116 hypothetical protein; 97.3 0.00054 1.2E-08 71.9 7.9 103 193-312 115-220 (268)
169 PRK10536 hypothetical protein; 97.3 0.0033 7.2E-08 63.9 13.1 135 165-313 55-213 (262)
170 PRK15386 type III secretion pr 97.3 0.00022 4.8E-09 77.3 4.9 66 581-658 48-113 (426)
171 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 80.1 13.0 156 166-342 174-348 (852)
172 KOG1514 Origin recognition com 97.3 0.0047 1E-07 70.0 15.1 210 164-376 395-621 (767)
173 PRK08058 DNA polymerase III su 97.3 0.0039 8.5E-08 67.8 14.4 164 166-341 6-180 (329)
174 PRK06090 DNA polymerase III su 97.3 0.0045 9.9E-08 66.1 14.4 179 173-376 11-201 (319)
175 PRK06871 DNA polymerase III su 97.3 0.0051 1.1E-07 65.9 14.7 181 173-373 10-200 (325)
176 smart00382 AAA ATPases associa 97.3 0.001 2.2E-08 62.6 8.5 89 193-286 3-91 (148)
177 PTZ00454 26S protease regulato 97.3 0.0062 1.3E-07 67.6 15.5 179 165-370 145-351 (398)
178 PRK08769 DNA polymerase III su 97.3 0.0009 2E-08 71.5 8.6 97 271-377 111-209 (319)
179 PRK10865 protein disaggregatio 97.3 0.0024 5.3E-08 78.3 13.5 45 165-215 178-222 (857)
180 PF13177 DNA_pol3_delta2: DNA 97.2 0.0022 4.9E-08 61.7 10.5 139 169-331 1-162 (162)
181 KOG2982 Uncharacterized conser 97.2 0.00014 3E-09 73.2 2.0 87 581-673 67-156 (418)
182 TIGR00602 rad24 checkpoint pro 97.2 0.003 6.4E-08 73.7 13.1 52 163-215 82-133 (637)
183 PRK11034 clpA ATP-dependent Cl 97.2 0.00061 1.3E-08 81.4 7.7 157 166-343 187-362 (758)
184 COG2607 Predicted ATPase (AAA+ 97.2 0.03 6.4E-07 55.3 17.4 121 163-312 58-182 (287)
185 PRK07993 DNA polymerase III su 97.2 0.0063 1.4E-07 66.0 14.3 181 173-375 10-203 (334)
186 PF10443 RNA12: RNA12 protein; 97.2 0.0085 1.8E-07 65.1 14.8 213 170-395 1-298 (431)
187 COG2812 DnaX DNA polymerase II 97.2 0.0013 2.7E-08 74.0 8.8 193 165-373 16-217 (515)
188 PF04665 Pox_A32: Poxvirus A32 97.2 0.0014 3.1E-08 66.3 8.4 37 192-230 13-49 (241)
189 COG1222 RPT1 ATP-dependent 26S 97.1 0.0078 1.7E-07 62.9 13.5 179 165-370 151-357 (406)
190 TIGR02639 ClpA ATP-dependent C 97.1 0.0034 7.4E-08 76.2 12.9 123 165-300 454-580 (731)
191 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0065 1.4E-07 63.9 13.1 43 193-240 22-64 (262)
192 PRK08118 topology modulation p 97.1 0.00025 5.4E-09 68.8 2.2 34 194-227 3-37 (167)
193 KOG4579 Leucine-rich repeat (L 97.1 0.00017 3.6E-09 64.2 0.8 84 581-673 49-133 (177)
194 KOG3665 ZYG-1-like serine/thre 97.1 0.00058 1.3E-08 80.8 5.4 107 556-674 146-261 (699)
195 PRK08939 primosomal protein Dn 97.1 0.0016 3.6E-08 69.5 8.2 122 169-312 135-260 (306)
196 PRK10865 protein disaggregatio 97.0 0.0043 9.3E-08 76.2 12.2 136 165-312 568-720 (857)
197 COG0542 clpA ATP-binding subun 97.0 0.0012 2.6E-08 77.2 6.8 133 165-311 491-642 (786)
198 PRK08181 transposase; Validate 97.0 0.0011 2.4E-08 69.0 5.9 100 193-312 107-208 (269)
199 PRK12377 putative replication 97.0 0.0017 3.7E-08 66.8 6.9 102 192-312 101-205 (248)
200 CHL00176 ftsH cell division pr 96.9 0.011 2.4E-07 69.5 14.3 177 165-368 183-386 (638)
201 PRK06964 DNA polymerase III su 96.9 0.0069 1.5E-07 65.4 11.5 95 271-377 130-226 (342)
202 PF01695 IstB_IS21: IstB-like 96.9 0.00085 1.8E-08 65.6 4.0 100 192-312 47-149 (178)
203 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0037 8.1E-08 77.1 10.4 138 165-312 565-717 (852)
204 KOG1859 Leucine-rich repeat pr 96.9 5.5E-05 1.2E-09 84.8 -5.0 108 578-698 180-290 (1096)
205 PRK06526 transposase; Provisio 96.9 0.0014 3.1E-08 67.9 5.6 100 192-312 98-200 (254)
206 PRK06921 hypothetical protein; 96.9 0.0037 7.9E-08 65.5 8.6 99 192-312 117-224 (266)
207 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0026 5.6E-08 77.8 8.5 136 165-312 566-718 (852)
208 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0011 2.5E-08 70.8 4.7 50 166-215 52-101 (361)
209 PRK12608 transcription termina 96.9 0.005 1.1E-07 66.3 9.5 104 173-282 119-229 (380)
210 PRK07952 DNA replication prote 96.8 0.0055 1.2E-07 62.9 9.4 103 192-312 99-204 (244)
211 PF07693 KAP_NTPase: KAP famil 96.8 0.033 7.1E-07 61.1 16.1 42 171-215 2-43 (325)
212 TIGR01241 FtsH_fam ATP-depende 96.8 0.021 4.5E-07 66.2 15.0 185 165-376 55-267 (495)
213 KOG0741 AAA+-type ATPase [Post 96.8 0.022 4.7E-07 62.4 13.6 162 189-380 535-716 (744)
214 PRK04132 replication factor C 96.7 0.018 3.9E-07 69.2 14.1 157 200-378 574-733 (846)
215 KOG2035 Replication factor C, 96.7 0.04 8.6E-07 55.6 14.1 208 167-399 15-261 (351)
216 CHL00095 clpC Clp protease ATP 96.7 0.0051 1.1E-07 75.7 9.6 137 165-312 509-661 (821)
217 PF00158 Sigma54_activat: Sigm 96.7 0.0027 5.8E-08 61.4 5.7 130 167-312 1-143 (168)
218 PF02562 PhoH: PhoH-like prote 96.7 0.0021 4.6E-08 63.5 5.0 131 169-313 4-156 (205)
219 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0047 1E-07 64.1 7.9 93 190-283 17-125 (235)
220 PTZ00494 tuzin-like protein; P 96.7 0.6 1.3E-05 50.9 23.1 170 160-343 366-544 (664)
221 KOG1859 Leucine-rich repeat pr 96.6 0.00025 5.3E-09 79.8 -2.2 124 531-674 164-290 (1096)
222 PRK11034 clpA ATP-dependent Cl 96.6 0.012 2.6E-07 70.7 11.5 122 166-300 459-584 (758)
223 PRK09183 transposase/IS protei 96.6 0.0042 9E-08 64.9 6.8 100 193-312 103-205 (259)
224 KOG4579 Leucine-rich repeat (L 96.6 0.00054 1.2E-08 61.0 0.0 91 556-658 51-141 (177)
225 KOG2228 Origin recognition com 96.6 0.023 5.1E-07 58.9 11.6 173 165-343 24-219 (408)
226 PRK07261 topology modulation p 96.5 0.008 1.7E-07 58.6 7.9 22 194-215 2-23 (171)
227 KOG1947 Leucine rich repeat pr 96.5 0.00044 9.5E-09 80.7 -1.1 61 613-673 186-253 (482)
228 PRK06835 DNA replication prote 96.5 0.0036 7.8E-08 67.4 5.6 102 193-312 184-288 (329)
229 PRK08699 DNA polymerase III su 96.5 0.019 4.1E-07 62.0 11.0 71 272-342 112-184 (325)
230 PRK09361 radB DNA repair and r 96.5 0.0099 2.1E-07 61.2 8.6 47 190-239 21-67 (225)
231 COG0470 HolB ATPase involved i 96.4 0.016 3.4E-07 63.7 10.4 142 166-329 2-167 (325)
232 PRK12727 flagellar biosynthesi 96.4 0.079 1.7E-06 59.8 15.4 90 191-284 349-439 (559)
233 TIGR02237 recomb_radB DNA repa 96.4 0.009 2E-07 60.7 7.7 49 190-241 10-58 (209)
234 COG1484 DnaC DNA replication p 96.4 0.0039 8.4E-08 64.8 4.9 83 191-292 104-186 (254)
235 TIGR02902 spore_lonB ATP-depen 96.4 0.012 2.6E-07 68.3 9.3 44 165-214 65-108 (531)
236 COG1223 Predicted ATPase (AAA+ 96.4 0.012 2.6E-07 58.4 7.7 157 165-343 121-297 (368)
237 COG4608 AppF ABC-type oligopep 96.4 0.015 3.3E-07 59.2 8.7 128 191-321 38-178 (268)
238 cd01120 RecA-like_NTPases RecA 96.3 0.013 2.7E-07 56.8 8.0 40 194-235 1-40 (165)
239 CHL00195 ycf46 Ycf46; Provisio 96.3 0.042 9.2E-07 62.5 13.0 180 165-370 228-429 (489)
240 TIGR01243 CDC48 AAA family ATP 96.3 0.037 8E-07 67.5 13.5 179 165-370 453-657 (733)
241 PF13207 AAA_17: AAA domain; P 96.3 0.0027 5.9E-08 58.0 2.9 22 194-215 1-22 (121)
242 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.033 7.1E-07 56.7 10.5 123 192-316 30-202 (254)
243 PRK11889 flhF flagellar biosyn 96.2 0.039 8.4E-07 59.7 11.3 104 191-298 240-347 (436)
244 COG1136 SalX ABC-type antimicr 96.2 0.039 8.5E-07 55.3 10.7 56 270-327 157-215 (226)
245 TIGR01243 CDC48 AAA family ATP 96.2 0.031 6.7E-07 68.2 12.1 180 165-371 178-382 (733)
246 PRK15455 PrkA family serine pr 96.2 0.004 8.6E-08 70.1 3.8 49 166-214 77-125 (644)
247 PF07728 AAA_5: AAA domain (dy 96.2 0.0022 4.8E-08 60.3 1.5 89 195-298 2-90 (139)
248 cd03238 ABC_UvrA The excision 96.2 0.032 7E-07 54.4 9.6 124 191-327 20-161 (176)
249 TIGR01650 PD_CobS cobaltochela 96.1 0.12 2.5E-06 55.1 14.2 63 165-240 45-107 (327)
250 cd01393 recA_like RecA is a b 96.1 0.038 8.2E-07 56.9 10.5 91 190-283 17-124 (226)
251 PRK06696 uridine kinase; Valid 96.1 0.007 1.5E-07 62.0 5.0 44 169-215 2-45 (223)
252 PHA02244 ATPase-like protein 96.1 0.027 5.9E-07 60.5 9.3 22 194-215 121-142 (383)
253 PF14532 Sigma54_activ_2: Sigm 96.0 0.0056 1.2E-07 57.4 3.6 107 168-312 1-109 (138)
254 cd03214 ABC_Iron-Siderophores_ 96.0 0.034 7.4E-07 54.8 9.3 122 191-317 24-162 (180)
255 KOG2123 Uncharacterized conser 96.0 0.00092 2E-08 66.8 -2.0 80 557-650 18-99 (388)
256 KOG1969 DNA replication checkp 96.0 0.014 3E-07 66.6 6.8 90 189-298 323-412 (877)
257 PRK04296 thymidine kinase; Pro 96.0 0.01 2.2E-07 58.9 5.4 114 193-314 3-117 (190)
258 KOG1644 U2-associated snRNP A' 96.0 0.0099 2.2E-07 57.0 4.8 92 775-878 56-150 (233)
259 PF00448 SRP54: SRP54-type pro 96.0 0.02 4.4E-07 56.9 7.3 89 192-283 1-93 (196)
260 COG1875 NYN ribonuclease and A 95.9 0.022 4.7E-07 59.8 7.5 133 167-311 226-386 (436)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.039 8.5E-07 52.0 8.8 105 191-317 25-131 (144)
262 cd03247 ABCC_cytochrome_bd The 95.9 0.02 4.3E-07 56.4 7.1 24 192-215 28-51 (178)
263 KOG2982 Uncharacterized conser 95.9 0.0015 3.3E-08 65.9 -0.9 146 734-914 89-265 (418)
264 PRK05541 adenylylsulfate kinas 95.9 0.016 3.4E-07 57.0 6.1 36 191-228 6-41 (176)
265 KOG1644 U2-associated snRNP A' 95.8 0.01 2.2E-07 56.9 4.3 83 555-648 61-149 (233)
266 KOG0744 AAA+-type ATPase [Post 95.8 0.055 1.2E-06 55.8 9.7 79 192-282 177-259 (423)
267 COG0542 clpA ATP-binding subun 95.8 0.018 3.9E-07 67.8 7.1 155 166-342 171-345 (786)
268 PRK13695 putative NTPase; Prov 95.8 0.0088 1.9E-07 58.7 3.9 22 194-215 2-23 (174)
269 TIGR03499 FlhF flagellar biosy 95.8 0.03 6.5E-07 59.4 8.2 87 191-282 193-281 (282)
270 KOG0730 AAA+-type ATPase [Post 95.8 0.1 2.2E-06 59.4 12.3 56 165-222 434-496 (693)
271 cd03222 ABC_RNaseL_inhibitor T 95.7 0.046 1E-06 53.3 8.7 25 191-215 24-48 (177)
272 PRK05022 anaerobic nitric oxid 95.7 0.069 1.5E-06 62.1 11.6 136 164-313 186-332 (509)
273 cd01133 F1-ATPase_beta F1 ATP 95.7 0.034 7.4E-07 57.6 7.9 53 191-245 68-122 (274)
274 PRK14722 flhF flagellar biosyn 95.7 0.03 6.6E-07 61.0 7.8 90 191-284 136-226 (374)
275 TIGR01817 nifA Nif-specific re 95.7 0.058 1.3E-06 63.4 10.8 134 163-312 194-340 (534)
276 cd00983 recA RecA is a bacter 95.7 0.014 3.1E-07 62.2 5.1 87 190-283 53-143 (325)
277 cd03216 ABC_Carb_Monos_I This 95.7 0.023 5.1E-07 54.9 6.3 116 192-317 26-146 (163)
278 KOG0734 AAA+-type ATPase conta 95.7 0.037 8E-07 60.8 8.1 53 166-218 305-363 (752)
279 cd01394 radB RadB. The archaea 95.6 0.045 9.7E-07 56.0 8.6 44 190-235 17-60 (218)
280 TIGR02012 tigrfam_recA protein 95.6 0.015 3.2E-07 62.1 5.0 87 190-283 53-143 (321)
281 COG5238 RNA1 Ran GTPase-activa 95.6 0.0088 1.9E-07 59.8 3.0 90 581-673 26-130 (388)
282 PRK11608 pspF phage shock prot 95.6 0.029 6.3E-07 61.0 7.3 133 166-312 7-150 (326)
283 PRK08233 hypothetical protein; 95.6 0.04 8.7E-07 54.5 7.8 24 192-215 3-26 (182)
284 COG2884 FtsE Predicted ATPase 95.6 0.1 2.2E-06 49.9 9.7 26 191-216 27-52 (223)
285 KOG0735 AAA+-type ATPase [Post 95.6 0.034 7.4E-07 63.2 7.7 73 191-283 430-504 (952)
286 cd03228 ABCC_MRP_Like The MRP 95.6 0.045 9.7E-07 53.5 7.9 123 191-318 27-160 (171)
287 PF00560 LRR_1: Leucine Rich R 95.5 0.0072 1.6E-07 36.0 1.3 21 616-637 1-21 (22)
288 cd03230 ABC_DR_subfamily_A Thi 95.5 0.031 6.7E-07 54.7 6.6 120 192-318 26-160 (173)
289 KOG0733 Nuclear AAA ATPase (VC 95.5 0.043 9.3E-07 61.4 8.1 98 165-284 190-293 (802)
290 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.085 1.9E-06 50.0 9.1 119 193-313 3-138 (159)
291 PRK09354 recA recombinase A; P 95.5 0.019 4.1E-07 61.8 5.3 87 190-283 58-148 (349)
292 KOG2123 Uncharacterized conser 95.4 0.0014 3E-08 65.6 -3.2 105 582-697 16-127 (388)
293 PRK05800 cobU adenosylcobinami 95.4 0.016 3.4E-07 56.2 4.1 22 194-215 3-24 (170)
294 PRK05703 flhF flagellar biosyn 95.4 0.078 1.7E-06 59.6 10.2 89 192-284 221-310 (424)
295 PF08423 Rad51: Rad51; InterP 95.4 0.039 8.5E-07 57.5 7.3 91 191-282 37-142 (256)
296 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.021 4.6E-07 57.8 5.2 23 192-214 29-51 (213)
297 KOG0731 AAA+-type ATPase conta 95.4 0.18 4E-06 59.1 13.2 183 165-373 311-521 (774)
298 PRK07132 DNA polymerase III su 95.4 0.38 8.3E-06 51.2 14.7 133 191-342 17-161 (299)
299 cd03229 ABC_Class3 This class 95.4 0.028 6.1E-07 55.3 5.9 25 191-215 25-49 (178)
300 TIGR02238 recomb_DMC1 meiotic 95.4 0.07 1.5E-06 57.3 9.2 58 190-248 94-155 (313)
301 cd03223 ABCD_peroxisomal_ALDP 95.3 0.11 2.4E-06 50.4 9.8 119 191-317 26-152 (166)
302 PRK12724 flagellar biosynthesi 95.3 0.05 1.1E-06 59.8 7.9 25 191-215 222-246 (432)
303 TIGR02974 phageshock_pspF psp 95.3 0.044 9.5E-07 59.5 7.4 45 167-215 1-45 (329)
304 PRK07667 uridine kinase; Provi 95.3 0.023 4.9E-07 56.7 4.8 38 174-215 3-40 (193)
305 KOG1532 GTPase XAB1, interacts 95.2 0.073 1.6E-06 53.5 8.0 64 189-254 16-90 (366)
306 PRK14974 cell division protein 95.2 0.11 2.3E-06 56.2 10.0 91 191-285 139-234 (336)
307 PRK13539 cytochrome c biogenes 95.2 0.14 3E-06 51.8 10.5 59 270-331 142-202 (207)
308 cd03246 ABCC_Protease_Secretio 95.2 0.056 1.2E-06 52.9 7.3 24 192-215 28-51 (173)
309 TIGR02858 spore_III_AA stage I 95.2 0.16 3.5E-06 53.1 11.0 129 174-317 98-233 (270)
310 PLN00020 ribulose bisphosphate 95.2 0.022 4.8E-07 60.7 4.5 27 189-215 145-171 (413)
311 COG1618 Predicted nucleotide k 95.2 0.017 3.6E-07 53.4 3.1 24 192-215 5-28 (179)
312 COG0572 Udk Uridine kinase [Nu 95.1 0.042 9.1E-07 54.4 6.1 26 190-215 6-31 (218)
313 TIGR02239 recomb_RAD51 DNA rep 95.1 0.062 1.3E-06 57.9 8.0 58 190-248 94-155 (316)
314 COG1419 FlhF Flagellar GTP-bin 95.1 0.07 1.5E-06 57.7 8.2 105 191-300 202-310 (407)
315 COG0468 RecA RecA/RadA recombi 95.1 0.075 1.6E-06 55.4 8.2 91 189-283 57-151 (279)
316 PRK13531 regulatory ATPase Rav 95.1 0.025 5.5E-07 63.1 4.9 153 165-342 20-193 (498)
317 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.027 5.9E-07 59.8 4.8 51 164-214 60-110 (358)
318 cd00544 CobU Adenosylcobinamid 95.1 0.083 1.8E-06 51.1 7.8 79 195-282 2-82 (169)
319 cd01131 PilT Pilus retraction 95.1 0.031 6.7E-07 56.0 5.1 111 193-317 2-113 (198)
320 PRK15429 formate hydrogenlyase 95.0 0.068 1.5E-06 64.8 8.8 135 165-313 376-521 (686)
321 KOG0728 26S proteasome regulat 95.0 0.42 9.1E-06 47.4 12.3 155 166-342 147-330 (404)
322 PRK00771 signal recognition pa 95.0 0.11 2.5E-06 58.1 9.8 57 190-248 93-150 (437)
323 PRK04301 radA DNA repair and r 95.0 0.096 2.1E-06 56.9 9.0 57 191-248 101-161 (317)
324 COG4618 ArpD ABC-type protease 95.0 0.21 4.5E-06 55.2 11.1 23 192-214 362-384 (580)
325 PLN03186 DNA repair protein RA 95.0 0.11 2.4E-06 56.3 9.3 58 190-248 121-182 (342)
326 PF13604 AAA_30: AAA domain; P 95.0 0.026 5.7E-07 56.3 4.2 108 192-312 18-130 (196)
327 PF12775 AAA_7: P-loop contain 94.9 0.035 7.5E-07 58.4 5.3 96 174-291 22-118 (272)
328 PRK12723 flagellar biosynthesi 94.9 0.16 3.5E-06 56.0 10.6 90 191-285 173-266 (388)
329 KOG1051 Chaperone HSP104 and r 94.9 0.15 3.3E-06 61.1 11.0 121 166-300 563-687 (898)
330 PF00485 PRK: Phosphoribulokin 94.9 0.018 3.9E-07 57.6 2.9 22 194-215 1-22 (194)
331 PRK15424 propionate catabolism 94.9 0.2 4.3E-06 57.9 11.6 47 165-215 219-265 (538)
332 COG0396 sufC Cysteine desulfur 94.9 0.23 4.9E-06 49.2 10.1 27 191-217 29-55 (251)
333 KOG2739 Leucine-rich acidic nu 94.9 0.014 3E-07 58.6 1.9 59 614-673 64-126 (260)
334 PLN03187 meiotic recombination 94.9 0.05 1.1E-06 58.8 6.3 58 190-248 124-185 (344)
335 PRK10733 hflB ATP-dependent me 94.9 0.16 3.5E-06 60.6 11.2 157 166-344 153-336 (644)
336 KOG2739 Leucine-rich acidic nu 94.9 0.011 2.5E-07 59.2 1.3 82 613-698 41-127 (260)
337 PRK06067 flagellar accessory p 94.8 0.087 1.9E-06 54.5 7.9 88 190-283 23-130 (234)
338 PF13238 AAA_18: AAA domain; P 94.8 0.019 4.2E-07 52.9 2.7 21 195-215 1-21 (129)
339 PRK06547 hypothetical protein; 94.8 0.038 8.2E-07 53.7 4.7 26 190-215 13-38 (172)
340 COG0563 Adk Adenylate kinase a 94.8 0.037 7.9E-07 54.0 4.6 22 194-215 2-23 (178)
341 PRK05480 uridine/cytidine kina 94.8 0.023 5.1E-07 57.6 3.4 26 190-215 4-29 (209)
342 PRK12726 flagellar biosynthesi 94.8 0.22 4.8E-06 53.9 10.7 92 190-284 204-296 (407)
343 PRK08533 flagellar accessory p 94.8 0.18 3.9E-06 51.8 9.8 49 191-243 23-71 (230)
344 KOG1947 Leucine rich repeat pr 94.7 0.0039 8.4E-08 72.7 -2.8 37 637-673 186-224 (482)
345 cd02019 NK Nucleoside/nucleoti 94.7 0.021 4.6E-07 45.9 2.4 22 194-215 1-22 (69)
346 cd03263 ABC_subfamily_A The AB 94.7 0.17 3.6E-06 51.9 9.6 24 192-215 28-51 (220)
347 PRK09270 nucleoside triphospha 94.7 0.13 2.9E-06 52.9 8.8 27 189-215 30-56 (229)
348 TIGR00390 hslU ATP-dependent p 94.7 0.096 2.1E-06 57.4 7.9 81 165-247 12-104 (441)
349 TIGR00235 udk uridine kinase. 94.7 0.025 5.5E-07 57.2 3.4 25 191-215 5-29 (207)
350 COG5238 RNA1 Ran GTPase-activa 94.7 0.064 1.4E-06 53.9 5.9 96 556-655 28-135 (388)
351 TIGR02236 recomb_radA DNA repa 94.6 0.15 3.2E-06 55.3 9.5 57 191-248 94-154 (310)
352 cd03282 ABC_MSH4_euk MutS4 hom 94.6 0.065 1.4E-06 53.7 6.1 119 192-320 29-158 (204)
353 cd01121 Sms Sms (bacterial rad 94.6 0.12 2.6E-06 56.9 8.5 84 191-283 81-168 (372)
354 cd02025 PanK Pantothenate kina 94.6 0.1 2.3E-06 53.0 7.5 22 194-215 1-22 (220)
355 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.15 3.2E-06 51.3 8.6 25 191-215 25-49 (200)
356 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.41 9E-06 48.3 12.0 25 191-215 33-57 (207)
357 TIGR03522 GldA_ABC_ATP gliding 94.6 0.24 5.2E-06 53.3 10.7 25 191-215 27-51 (301)
358 TIGR00554 panK_bact pantothena 94.6 0.15 3.3E-06 53.8 8.9 25 190-214 60-84 (290)
359 PRK05439 pantothenate kinase; 94.5 0.17 3.6E-06 53.9 9.1 95 174-274 70-166 (311)
360 TIGR00150 HI0065_YjeE ATPase, 94.5 0.054 1.2E-06 49.6 4.7 40 172-215 6-45 (133)
361 PTZ00301 uridine kinase; Provi 94.5 0.029 6.3E-07 56.3 3.3 23 192-214 3-25 (210)
362 TIGR00064 ftsY signal recognit 94.5 0.15 3.3E-06 53.6 8.8 91 190-284 70-165 (272)
363 PF13671 AAA_33: AAA domain; P 94.5 0.03 6.5E-07 52.8 3.2 21 194-214 1-21 (143)
364 PF01583 APS_kinase: Adenylyls 94.4 0.045 9.7E-07 51.6 4.1 36 192-229 2-37 (156)
365 cd03245 ABCC_bacteriocin_expor 94.4 0.34 7.3E-06 49.6 10.9 25 191-215 29-53 (220)
366 TIGR02329 propionate_PrpR prop 94.4 0.33 7.1E-06 56.1 11.8 46 166-215 213-258 (526)
367 cd00267 ABC_ATPase ABC (ATP-bi 94.3 0.08 1.7E-06 50.8 5.8 116 192-318 25-145 (157)
368 cd03244 ABCC_MRP_domain2 Domai 94.3 0.23 5.1E-06 50.8 9.6 24 192-215 30-53 (221)
369 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.22 4.9E-06 51.5 9.5 50 190-243 19-68 (237)
370 cd01125 repA Hexameric Replica 94.3 0.19 4.1E-06 52.2 9.0 21 194-214 3-23 (239)
371 COG1120 FepC ABC-type cobalami 94.3 0.28 6E-06 50.4 9.8 24 191-214 27-50 (258)
372 PTZ00035 Rad51 protein; Provis 94.3 0.19 4E-06 54.7 9.1 58 190-248 116-177 (337)
373 PRK06762 hypothetical protein; 94.3 0.035 7.5E-07 54.0 3.2 24 192-215 2-25 (166)
374 PF00154 RecA: recA bacterial 94.3 0.078 1.7E-06 56.4 6.0 87 190-283 51-141 (322)
375 TIGR00708 cobA cob(I)alamin ad 94.2 0.28 6E-06 47.1 9.0 119 192-313 5-140 (173)
376 PRK10867 signal recognition pa 94.2 0.16 3.4E-06 56.9 8.5 24 191-214 99-122 (433)
377 PRK06002 fliI flagellum-specif 94.2 0.12 2.6E-06 57.6 7.4 86 191-282 164-263 (450)
378 TIGR00959 ffh signal recogniti 94.2 0.14 3.1E-06 57.1 8.1 25 191-215 98-122 (428)
379 cd01122 GP4d_helicase GP4d_hel 94.1 0.33 7.2E-06 51.5 10.6 54 191-247 29-82 (271)
380 PF00910 RNA_helicase: RNA hel 94.1 0.025 5.5E-07 50.1 1.7 21 195-215 1-21 (107)
381 KOG3864 Uncharacterized conser 94.1 0.0055 1.2E-07 58.8 -2.7 65 866-934 123-188 (221)
382 cd03115 SRP The signal recogni 94.1 0.21 4.6E-06 48.8 8.3 22 194-215 2-23 (173)
383 PRK06995 flhF flagellar biosyn 94.0 0.27 5.8E-06 55.6 9.9 88 192-283 256-344 (484)
384 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.077 1.7E-06 58.1 5.5 106 190-316 60-170 (362)
385 PRK03839 putative kinase; Prov 94.0 0.037 8.1E-07 54.6 2.8 22 194-215 2-23 (180)
386 PRK14723 flhF flagellar biosyn 94.0 0.32 6.9E-06 57.9 10.8 87 192-283 185-273 (767)
387 COG0464 SpoVK ATPases of the A 94.0 0.54 1.2E-05 54.8 12.8 157 166-344 243-424 (494)
388 TIGR01360 aden_kin_iso1 adenyl 94.0 0.046 9.9E-07 54.4 3.4 24 191-214 2-25 (188)
389 TIGR00968 3a0106s01 sulfate AB 94.0 0.25 5.3E-06 51.2 9.0 25 191-215 25-49 (237)
390 PF03308 ArgK: ArgK protein; 94.0 0.086 1.9E-06 53.5 5.2 64 173-240 14-77 (266)
391 KOG3347 Predicted nucleotide k 94.0 0.073 1.6E-06 48.4 4.2 69 192-271 7-75 (176)
392 KOG0729 26S proteasome regulat 94.0 0.4 8.6E-06 48.0 9.6 55 166-222 178-239 (435)
393 PF10236 DAP3: Mitochondrial r 93.9 0.74 1.6E-05 49.6 12.7 49 324-373 258-306 (309)
394 PHA00729 NTP-binding motif con 93.9 0.069 1.5E-06 53.6 4.4 25 191-215 16-40 (226)
395 TIGR01069 mutS2 MutS2 family p 93.9 0.057 1.2E-06 65.4 4.5 185 191-394 321-518 (771)
396 COG1428 Deoxynucleoside kinase 93.9 0.044 9.5E-07 53.5 2.9 24 192-215 4-27 (216)
397 PF03193 DUF258: Protein of un 93.9 0.085 1.9E-06 50.0 4.7 35 172-215 24-58 (161)
398 COG2842 Uncharacterized ATPase 93.8 1.7 3.7E-05 45.1 14.2 122 165-301 72-193 (297)
399 PF07726 AAA_3: ATPase family 93.8 0.036 7.7E-07 49.8 2.0 28 195-224 2-29 (131)
400 cd03243 ABC_MutS_homologs The 93.7 0.052 1.1E-06 54.7 3.3 22 193-214 30-51 (202)
401 PRK05201 hslU ATP-dependent pr 93.7 0.17 3.6E-06 55.6 7.3 81 165-247 15-107 (443)
402 PRK04040 adenylate kinase; Pro 93.7 0.05 1.1E-06 53.8 3.1 24 192-215 2-25 (188)
403 PRK10751 molybdopterin-guanine 93.7 0.069 1.5E-06 51.5 3.8 25 191-215 5-29 (173)
404 TIGR01425 SRP54_euk signal rec 93.7 0.6 1.3E-05 52.0 11.6 24 191-214 99-122 (429)
405 PF05659 RPW8: Arabidopsis bro 93.7 0.44 9.6E-06 44.5 9.0 78 3-84 8-86 (147)
406 PF00560 LRR_1: Leucine Rich R 93.7 0.031 6.7E-07 33.2 0.9 21 640-661 1-21 (22)
407 COG1066 Sms Predicted ATP-depe 93.7 0.19 4.2E-06 54.0 7.4 84 191-284 92-179 (456)
408 COG1126 GlnQ ABC-type polar am 93.6 0.077 1.7E-06 51.9 4.0 37 191-230 27-63 (240)
409 TIGR03411 urea_trans_UrtD urea 93.6 0.48 1E-05 49.2 10.5 24 192-215 28-51 (242)
410 cd02023 UMPK Uridine monophosp 93.6 0.042 9E-07 55.2 2.4 22 194-215 1-22 (198)
411 KOG0924 mRNA splicing factor A 93.6 0.55 1.2E-05 53.3 10.9 132 191-329 370-529 (1042)
412 TIGR02322 phosphon_PhnN phosph 93.6 0.052 1.1E-06 53.5 2.9 23 193-215 2-24 (179)
413 PRK05917 DNA polymerase III su 93.6 0.39 8.5E-06 50.4 9.5 135 174-330 6-154 (290)
414 PRK00625 shikimate kinase; Pro 93.6 0.049 1.1E-06 52.9 2.6 22 194-215 2-23 (173)
415 PF13479 AAA_24: AAA domain 93.5 0.22 4.9E-06 50.4 7.6 21 192-212 3-23 (213)
416 PRK05922 type III secretion sy 93.5 0.2 4.4E-06 55.6 7.7 86 191-283 156-257 (434)
417 COG1131 CcmA ABC-type multidru 93.5 0.58 1.3E-05 50.0 11.0 24 192-215 31-54 (293)
418 cd03287 ABC_MSH3_euk MutS3 hom 93.5 0.39 8.5E-06 48.8 9.2 120 191-319 30-160 (222)
419 cd03213 ABCG_EPDR ABCG transpo 93.5 0.5 1.1E-05 47.2 9.9 25 191-215 34-58 (194)
420 PRK14721 flhF flagellar biosyn 93.5 0.33 7.1E-06 54.0 9.2 24 191-214 190-213 (420)
421 KOG0727 26S proteasome regulat 93.5 0.16 3.4E-06 50.3 5.9 56 165-222 155-217 (408)
422 COG1703 ArgK Putative periplas 93.5 0.11 2.3E-06 53.5 5.0 66 175-244 38-103 (323)
423 PRK13537 nodulation ABC transp 93.5 0.46 1E-05 51.2 10.3 24 192-215 33-56 (306)
424 PRK05986 cob(I)alamin adenolsy 93.4 0.4 8.7E-06 46.8 8.6 122 191-313 21-158 (191)
425 PF00625 Guanylate_kin: Guanyl 93.4 0.087 1.9E-06 52.1 4.2 38 192-231 2-39 (183)
426 smart00534 MUTSac ATPase domai 93.4 0.067 1.5E-06 52.9 3.4 21 194-214 1-21 (185)
427 PRK11388 DNA-binding transcrip 93.4 0.18 3.9E-06 60.7 7.7 130 165-312 325-466 (638)
428 cd03289 ABCC_CFTR2 The CFTR su 93.4 0.44 9.5E-06 50.4 9.7 25 191-215 29-53 (275)
429 PRK00889 adenylylsulfate kinas 93.4 0.071 1.5E-06 52.3 3.5 25 191-215 3-27 (175)
430 PRK08149 ATP synthase SpaL; Va 93.4 0.28 6E-06 54.6 8.4 86 191-283 150-251 (428)
431 cd03300 ABC_PotA_N PotA is an 93.4 0.36 7.7E-06 49.8 8.9 24 192-215 26-49 (232)
432 cd02024 NRK1 Nicotinamide ribo 93.3 0.051 1.1E-06 53.4 2.3 22 194-215 1-22 (187)
433 COG2274 SunT ABC-type bacterio 93.3 0.52 1.1E-05 56.4 11.1 24 191-214 498-521 (709)
434 PRK10820 DNA-binding transcrip 93.3 0.17 3.7E-06 58.9 7.1 46 166-215 205-250 (520)
435 TIGR03263 guanyl_kin guanylate 93.3 0.065 1.4E-06 52.9 3.1 23 193-215 2-24 (180)
436 PF03205 MobB: Molybdopterin g 93.2 0.087 1.9E-06 49.2 3.7 39 193-232 1-39 (140)
437 KOG3864 Uncharacterized conser 93.2 0.0065 1.4E-07 58.4 -3.8 72 825-911 118-189 (221)
438 PF13481 AAA_25: AAA domain; P 93.2 0.045 9.8E-07 54.7 1.9 41 193-233 33-81 (193)
439 PRK13409 putative ATPase RIL; 93.2 0.43 9.2E-06 56.4 10.2 25 191-215 364-388 (590)
440 PRK06731 flhF flagellar biosyn 93.2 0.49 1.1E-05 49.4 9.5 90 192-285 75-166 (270)
441 cd03280 ABC_MutS2 MutS2 homolo 93.2 0.42 9.2E-06 47.9 8.9 22 192-213 28-49 (200)
442 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.054 1.2E-06 53.6 2.3 22 194-215 1-22 (183)
443 PRK00131 aroK shikimate kinase 93.1 0.069 1.5E-06 52.3 3.0 24 192-215 4-27 (175)
444 COG0467 RAD55 RecA-superfamily 93.1 0.17 3.7E-06 53.3 6.2 50 190-243 21-70 (260)
445 TIGR02868 CydC thiol reductant 93.1 0.59 1.3E-05 55.1 11.3 25 191-215 360-384 (529)
446 COG1124 DppF ABC-type dipeptid 93.1 0.074 1.6E-06 53.1 3.0 24 191-214 32-55 (252)
447 PF03215 Rad17: Rad17 cell cyc 93.1 0.12 2.7E-06 59.3 5.3 60 165-229 19-78 (519)
448 KOG2170 ATPase of the AAA+ sup 93.0 0.27 5.8E-06 50.6 6.9 119 166-298 83-203 (344)
449 COG0714 MoxR-like ATPases [Gen 93.0 0.19 4.2E-06 54.9 6.6 65 166-243 25-89 (329)
450 cd01135 V_A-ATPase_B V/A-type 93.0 0.35 7.7E-06 50.1 8.0 55 191-245 68-125 (276)
451 cd00820 PEPCK_HprK Phosphoenol 93.0 0.087 1.9E-06 46.1 3.1 22 192-213 15-36 (107)
452 cd02021 GntK Gluconate kinase 93.0 0.063 1.4E-06 51.1 2.5 22 194-215 1-22 (150)
453 COG0488 Uup ATPase components 93.0 0.58 1.3E-05 53.9 10.6 136 191-329 347-511 (530)
454 TIGR03575 selen_PSTK_euk L-ser 93.0 0.21 4.6E-06 53.9 6.6 21 195-215 2-22 (340)
455 COG2019 AdkA Archaeal adenylat 93.0 0.092 2E-06 48.9 3.3 24 192-215 4-27 (189)
456 PRK04328 hypothetical protein; 93.0 0.27 5.9E-06 51.2 7.3 41 191-233 22-62 (249)
457 PRK06217 hypothetical protein; 93.0 0.065 1.4E-06 53.0 2.6 22 194-215 3-24 (183)
458 PRK03846 adenylylsulfate kinas 92.9 0.089 1.9E-06 52.7 3.6 26 190-215 22-47 (198)
459 PF06309 Torsin: Torsin; Inte 92.9 0.19 4.1E-06 45.1 5.1 50 166-215 26-76 (127)
460 PF01078 Mg_chelatase: Magnesi 92.9 0.17 3.7E-06 50.0 5.3 42 165-214 3-44 (206)
461 PRK08927 fliI flagellum-specif 92.9 0.39 8.5E-06 53.5 8.8 86 191-283 157-258 (442)
462 PRK13545 tagH teichoic acids e 92.9 0.81 1.8E-05 52.2 11.3 24 192-215 50-73 (549)
463 PF08433 KTI12: Chromatin asso 92.9 0.25 5.4E-06 51.8 6.9 23 193-215 2-24 (270)
464 KOG0737 AAA+-type ATPase [Post 92.9 0.79 1.7E-05 48.7 10.4 56 165-222 92-155 (386)
465 cd02028 UMPK_like Uridine mono 92.9 0.066 1.4E-06 52.6 2.4 22 194-215 1-22 (179)
466 PF08477 Miro: Miro-like prote 92.9 0.079 1.7E-06 48.0 2.8 22 195-216 2-23 (119)
467 PRK14737 gmk guanylate kinase; 92.9 0.099 2.1E-06 51.6 3.7 25 191-215 3-27 (186)
468 PRK14738 gmk guanylate kinase; 92.8 0.11 2.3E-06 52.5 3.9 26 190-215 11-36 (206)
469 PRK10078 ribose 1,5-bisphospho 92.8 0.083 1.8E-06 52.4 3.1 23 193-215 3-25 (186)
470 cd00227 CPT Chloramphenicol (C 92.8 0.075 1.6E-06 52.1 2.8 23 193-215 3-25 (175)
471 COG1102 Cmk Cytidylate kinase 92.8 0.067 1.4E-06 49.6 2.1 42 194-248 2-43 (179)
472 TIGR03878 thermo_KaiC_2 KaiC d 92.8 0.36 7.8E-06 50.6 7.9 42 190-233 34-75 (259)
473 PRK13949 shikimate kinase; Pro 92.7 0.076 1.6E-06 51.6 2.6 22 194-215 3-24 (169)
474 PRK00300 gmk guanylate kinase; 92.7 0.089 1.9E-06 53.2 3.3 25 191-215 4-28 (205)
475 PRK15115 response regulator Gl 92.7 0.33 7.2E-06 55.8 8.3 46 166-215 135-180 (444)
476 cd00071 GMPK Guanosine monopho 92.7 0.078 1.7E-06 49.4 2.6 22 194-215 1-22 (137)
477 PRK07276 DNA polymerase III su 92.6 3.1 6.7E-05 44.0 14.5 70 270-340 101-172 (290)
478 KOG0736 Peroxisome assembly fa 92.6 0.34 7.4E-06 56.1 7.8 98 165-284 672-775 (953)
479 COG0541 Ffh Signal recognition 92.6 7.8 0.00017 42.6 17.6 56 190-248 98-155 (451)
480 PF00005 ABC_tran: ABC transpo 92.6 0.13 2.9E-06 47.9 4.0 24 192-215 11-34 (137)
481 PRK08972 fliI flagellum-specif 92.6 0.27 5.9E-06 54.5 6.8 85 191-282 161-261 (444)
482 PRK11823 DNA repair protein Ra 92.6 0.27 5.9E-06 55.8 7.1 41 191-233 79-119 (446)
483 COG1936 Predicted nucleotide k 92.5 0.094 2E-06 49.4 2.8 20 194-213 2-21 (180)
484 PRK15064 ABC transporter ATP-b 92.5 0.77 1.7E-05 54.0 11.2 24 192-215 27-50 (530)
485 cd02020 CMPK Cytidine monophos 92.5 0.077 1.7E-06 50.2 2.3 22 194-215 1-22 (147)
486 COG0529 CysC Adenylylsulfate k 92.5 0.12 2.6E-06 48.8 3.4 25 190-214 21-45 (197)
487 PF03266 NTPase_1: NTPase; In 92.5 0.085 1.8E-06 51.0 2.6 21 195-215 2-22 (168)
488 smart00487 DEXDc DEAD-like hel 92.5 0.58 1.3E-05 46.5 8.9 22 193-214 25-47 (201)
489 TIGR01818 ntrC nitrogen regula 92.5 0.41 8.8E-06 55.4 8.7 132 166-313 135-279 (463)
490 TIGR02655 circ_KaiC circadian 92.4 0.68 1.5E-05 53.5 10.3 54 190-248 261-314 (484)
491 KOG0739 AAA+-type ATPase [Post 92.4 15 0.00033 38.1 22.3 97 166-284 134-236 (439)
492 PRK13765 ATP-dependent proteas 92.4 0.23 5E-06 58.5 6.4 74 165-248 31-104 (637)
493 KOG0733 Nuclear AAA ATPase (VC 92.4 0.31 6.7E-06 54.9 6.8 155 192-370 545-718 (802)
494 PRK11160 cysteine/glutathione 92.3 0.68 1.5E-05 55.0 10.5 25 191-215 365-389 (574)
495 PRK13947 shikimate kinase; Pro 92.3 0.091 2E-06 51.3 2.6 22 194-215 3-24 (171)
496 cd03284 ABC_MutS1 MutS1 homolo 92.3 0.12 2.6E-06 52.5 3.5 22 193-214 31-52 (216)
497 TIGR03258 PhnT 2-aminoethylpho 92.3 0.59 1.3E-05 51.6 9.1 24 192-215 31-54 (362)
498 COG1122 CbiO ABC-type cobalt t 92.3 0.43 9.2E-06 48.8 7.4 23 192-214 30-52 (235)
499 PRK13948 shikimate kinase; Pro 92.2 0.12 2.6E-06 50.6 3.3 25 191-215 9-33 (182)
500 PRK00409 recombination and DNA 92.2 0.79 1.7E-05 55.9 10.9 184 191-394 326-523 (782)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-90 Score=816.83 Aligned_cols=775 Identities=28% Similarity=0.401 Sum_probs=584.4
Q ss_pred hHHHHHHHHHHhhhcccchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHhhhhcchhhHHH
Q 002154 3 DAIISPLLEQLISVAVEEPKEQVRLVNGVGKEVEKLTSNLQAIQAVLHDAEKRQVKEETVRLWLDQLRGTSYDMEDVLGE 82 (959)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~~d~ed~ld~ 82 (959)
++.++..++++.+ .+.++...+.+.++.+..|++.+..+++++++++.++.....+..|...+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777 777889999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHhhccccccc--ccCcccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCC--cccCCCCCC
Q 002154 83 WNTARLKLQINKKKVCS--FFPAASCFGCKPIVLRRDIALKIKEINETLDNIAKQKDQFGFSVNGTKSN--ERADQRVPS 158 (959)
Q Consensus 83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ 158 (959)
|.......+.....-.+ .... .|++ ..++..+..+..+.+++-.+.+....++.+....... ......+++
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~-~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~ 152 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQR-LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVET 152 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHH-Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhccc
Confidence 99877655332211100 0111 1111 4566777777777788877777777776544221111 111122334
Q ss_pred cccCCccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHH
Q 002154 159 ISSIDESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS-VKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 159 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~ 237 (959)
.+..+... ||.+..++++.+.|..++ .++++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++..
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 44444445 999999999999998653 39999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHHHhCCCC-CcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHH
Q 002154 238 RIARAIIEALKPGS-AKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVA 316 (959)
Q Consensus 238 ~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 316 (959)
.++++|++.++... .......++++..+.+. +++|||+|||||||+. .+|+.+..++|...+||||++|||++.|+
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~-L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNL-LEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHH-hccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 99999999997422 22333346888888888 9999999999999986 45999999999999999999999999999
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhh
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILES 395 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~ 395 (959)
.. +++...++++.|+++|||+||.+.++.... ...+.+.++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 98 888889999999999999999999986543 3344599999999999999999999999999999999999999986
Q ss_pred hhhh----hhhccccchHHHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhccccc-CCCCcHHHHHHHHHH
Q 002154 396 EIWE----LEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSE-KGAKEMEDIGEEYFN 470 (959)
Q Consensus 396 ~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~-~~~~~~e~~~~~~~~ 470 (959)
..+. .++..+.++++|++||+.||+++|.||+|||+||+||+|+++.||.+|+||||+.+ ..+.+++++|+.|+.
T Consensus 382 l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~ 461 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIE 461 (889)
T ss_pred ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHH
Confidence 5443 33445789999999999999999999999999999999999999999999999998 447889999999999
Q ss_pred HHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhc-----ccceEeeccCCCCCcccccccCcCcEEEEEeeeccCCC
Q 002154 471 ILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCR-----NECFALEIHSGSGEESAMSSFGETKILHLMLTLYKGAS 545 (959)
Q Consensus 471 ~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~ 545 (959)
+|++++|++..... ++..+|.|||+|||+|.++++ +++++.....+. ...+....+ ..+|+++++++....
T Consensus 462 ~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~-~~~~~~~~~-~~~rr~s~~~~~~~~ 537 (889)
T KOG4658|consen 462 ELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGL-SEIPQVKSW-NSVRRMSLMNNKIEH 537 (889)
T ss_pred HHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCc-cccccccch-hheeEEEEeccchhh
Confidence 99999999986654 566789999999999999999 666555443111 123322233 789999999988764
Q ss_pred CccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccC
Q 002154 546 VPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQ 625 (959)
Q Consensus 546 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~ 625 (959)
.+... .+++|+||.+.++.. ++....+.+|..++.||||||++ +..+.++|++|++|.|||||+|+++
T Consensus 538 ~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 538 IAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred ccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhhhhhhcccccCC
Confidence 44332 577899999999864 34455667799999999999998 2558899999999999999999999
Q ss_pred CCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCC
Q 002154 626 EAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRAC 705 (959)
Q Consensus 626 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~ 705 (959)
. +..||.++++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....+ ..
T Consensus 606 ~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~ 681 (889)
T KOG4658|consen 606 G-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VL 681 (889)
T ss_pred C-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch--hH
Confidence 9 99999999999999999999988787887777889999999997652 11111224555566666555544333 12
Q ss_pred CccccccCCCCCC----ceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCC
Q 002154 706 SLGSLKKLNLLRQ----CSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGP 781 (959)
Q Consensus 706 ~~~~L~~L~~L~~----L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 781 (959)
.+..+..+..|+. +.+.++ ........+..+.+|+.|.+..+........ ... ....+. .
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~-----~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~------~~~--~~~~~~---~ 745 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGC-----SKRTLISSLGSLGNLEELSILDCGISEIVIE------WEE--SLIVLL---C 745 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhccc-----ccceeecccccccCcceEEEEcCCCchhhcc------ccc--ccchhh---h
Confidence 2333444444443 222111 1123334556667777777776652110000 000 000000 1
Q ss_pred CCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCc-CCCCCCcCCCcc
Q 002154 782 PPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEH-LPPLGKLPSLED 836 (959)
Q Consensus 782 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~ 836 (959)
++++..+.+.++.+.+ . +.|....++|+.|.+..|...+. +|....+..++.
T Consensus 746 f~~l~~~~~~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHHHHHhhcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 3355555555555555 3 66666777777777777765554 333444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.4e-64 Score=626.21 Aligned_cols=677 Identities=21% Similarity=0.288 Sum_probs=471.9
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe---CCC------
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV---SEP------ 233 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~------ 233 (959)
+...+|||++.++++..+|... .++.++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3457999999999999988543 34689999999999999999999999 57788998888742 111
Q ss_pred -----CC-HHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEE
Q 002154 234 -----FD-EFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLL 307 (959)
Q Consensus 234 -----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 307 (959)
+. ...+.++++.++........... ..+++. +++||+||||||||+. ..|+.+.....+.++||+||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~-L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEER-LKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHH-HhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555432211111111 345566 8899999999999864 46888877666678899999
Q ss_pred EeccchhHHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHH
Q 002154 308 ITTRKETVALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEK 387 (959)
Q Consensus 308 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~ 387 (959)
||||+..++..++..++|+++.+++++||+||.++||... ..++.+.+++++|+++|+|+|||++++|+.|+++ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 9999999998777778999999999999999999999653 3356788999999999999999999999999987 689
Q ss_pred HHHHHHhhhhhhhhhccccchHHHHhhhcCCCh-hhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcHHHHHH
Q 002154 388 EWQNILESEIWELEAIEKGLLAPLLLSYKELPS-KVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDIGE 466 (959)
Q Consensus 388 ~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~~~ 466 (959)
+|..++++.... .+..+.++|++||+.|++ ..|.||+++|+|+.+..++ .+..|+|.+.... +
T Consensus 406 ~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~ 469 (1153)
T PLN03210 406 DWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------N 469 (1153)
T ss_pred HHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------h
Confidence 999999875432 235699999999999987 5999999999999987654 4778888765432 2
Q ss_pred HHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhcccc-------eEeeccCCCCCcccccccCcCcEEEEEee
Q 002154 467 EYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCRNEC-------FALEIHSGSGEESAMSSFGETKILHLMLT 539 (959)
Q Consensus 467 ~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~r~l~~~ 539 (959)
.-++.|++++|++... .+++|||++|+|+++++.++. +.....+.. ..........+++++++.
T Consensus 470 ~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~--~vl~~~~g~~~v~~i~l~ 540 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDIC--DVLEDNTGTKKVLGITLD 540 (1153)
T ss_pred hChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHH--HHHHhCcccceeeEEEec
Confidence 2388899999998643 159999999999999987653 111111000 000111122567777765
Q ss_pred eccCCCCccccccccCCCCCccEEEecCCcch---hhh------------------------hhhhHHhccCCcccEEEc
Q 002154 540 LYKGASVPIPIWDNVKGLRGLRSLLVESDEYS---WFS------------------------EVLPQLFDKLTCLRALKL 592 (959)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~---~~~------------------------~~~~~~~~~~~~Lr~L~L 592 (959)
.......... ...+.++++|+.|.+..+... ... ..+|..| .+.+|+.|+|
T Consensus 541 ~~~~~~~~i~-~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 541 IDEIDELHIH-ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred cCccceeeec-HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEEC
Confidence 5443321111 123446777777766543210 000 0122222 3456666666
Q ss_pred cccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCC
Q 002154 593 EVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAG 672 (959)
Q Consensus 593 ~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (959)
.+ +.+..+|..+..+++|++|+|+++..++.+|. ++.+++|++|++++|..+..+|..+.+|++|++|++++
T Consensus 619 ~~-------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 619 QG-------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cC-------ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 66 55666777777777888888877766777775 67777888888887777777787777788888888877
Q ss_pred ccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeec
Q 002154 673 TDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFG 752 (959)
Q Consensus 673 ~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 752 (959)
|..+..+|.++ ++++|+.|.+..+.... .+.. ...+|+.|.+.+.. +. ..+..+ .+++|+.|.+..+
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~----~~p~--~~~nL~~L~L~~n~-i~----~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLK----SFPD--ISTNISWLDLDETA-IE----EFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCcc----cccc--ccCCcCeeecCCCc-cc----cccccc-ccccccccccccc
Confidence 77777777665 56777777655432211 0111 12345555554422 11 111111 3456666666543
Q ss_pred CCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcC
Q 002154 753 HSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLP 832 (959)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 832 (959)
........ . ..........+++|+.|.+++|.... .+ |.+++.+++|+.|+|++|..++.+|....++
T Consensus 758 ~~~~l~~~-------~---~~l~~~~~~~~~sL~~L~Ls~n~~l~-~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~ 825 (1153)
T PLN03210 758 KSEKLWER-------V---QPLTPLMTMLSPSLTRLFLSDIPSLV-EL-PSSIQNLHKLEHLEIENCINLETLPTGINLE 825 (1153)
T ss_pred chhhcccc-------c---cccchhhhhccccchheeCCCCCCcc-cc-ChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence 21000000 0 00000011235789999999986554 15 8889999999999999999999999777899
Q ss_pred CCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCc
Q 002154 833 SLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLK 912 (959)
Q Consensus 833 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~ 912 (959)
+|+.|++++|..+..++. ..++|+.|++++ +.+++++. .+..+++|+.|++++|++++
T Consensus 826 sL~~L~Ls~c~~L~~~p~---------------~~~nL~~L~Ls~-n~i~~iP~------si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD---------------ISTNISDLNLSR-TGIEEVPW------WIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ccCEEECCCCCccccccc---------------cccccCEeECCC-CCCccChH------HHhcCCCCCEEECCCCCCcC
Confidence 999999999988765543 346788999888 56777765 46778999999999999999
Q ss_pred CCCcCCCCCCCcceEEEccCcchHH
Q 002154 913 ALPDHLLQKSTLQGFGIYHCPILEE 937 (959)
Q Consensus 913 ~lp~~l~~l~~L~~L~l~~c~~l~~ 937 (959)
.+|..+..+++|+.+++++|+.|.+
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccCcccccccCCCeeecCCCccccc
Confidence 9998888889999999999988764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.2e-43 Score=379.11 Aligned_cols=280 Identities=38% Similarity=0.614 Sum_probs=224.5
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP 249 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 249 (959)
||.++++|.++|.... .+.++|+|+||||+||||||+.++++..++.+|+.++||+++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 478999999999999999999999977789999999999999999999999999999984
Q ss_pred CCC--cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHHhhcc-cceEe
Q 002154 250 GSA--KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVALIMGS-TQVIS 326 (959)
Q Consensus 250 ~~~--~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~ 326 (959)
... ....+.+.....+.+. ++++++||||||||+.. .|+.+...++....|++||||||+..++..++. ...++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLREL-LKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHH-HCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred cccccccccccccccccchhh-hccccceeeeeeecccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 422 1456677788999998 99999999999998753 788888888877789999999999998877654 67999
Q ss_pred cCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhhhhhhhh---hc
Q 002154 327 VNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILESEIWELE---AI 403 (959)
Q Consensus 327 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~ 403 (959)
+++|++++|++||.+.++... ....+...+++++|+++|+|+|||++++|++|+.+.+..+|..++++...... ..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987544 22334556788899999999999999999999776677899998876544442 23
Q ss_pred cccchHHHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCC
Q 002154 404 EKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKG 457 (959)
Q Consensus 404 ~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~ 457 (959)
...+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|+|||...+
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 467899999999999999999999999999999999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.2e-22 Score=256.46 Aligned_cols=297 Identities=19% Similarity=0.148 Sum_probs=171.2
Q ss_pred cccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcC
Q 002154 606 DIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDE 685 (959)
Q Consensus 606 ~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 685 (959)
.+|..++++.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+++
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 45555666666666666666533355666666666666666666544455666666666666666665443455555666
Q ss_pred CCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccC
Q 002154 686 LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRR 765 (959)
Q Consensus 686 L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 765 (959)
+++|++|++..+... +.....+.++++|+.|.+.+..- ....+..+.++++|+.|+++.+...
T Consensus 235 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~---------- 297 (968)
T PLN00113 235 LTSLNHLDLVYNNLT---GPIPSSLGNLKNLQYLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLS---------- 297 (968)
T ss_pred CCCCCEEECcCceec---cccChhHhCCCCCCEEECcCCee----eccCchhHhhccCcCEEECcCCeec----------
Confidence 666666655443322 22333455555566555544221 1122233445566666666655421
Q ss_pred CCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccC
Q 002154 766 ENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKS 844 (959)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~ 844 (959)
...+..+..+++|+.|++.+|.... ..|.++..+++|+.|++++|.....+| .++.+++|+.|+++++.-
T Consensus 298 -------~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 298 -------GEIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred -------cCCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 1123345566788888888777654 337777788888888888876555555 467778888888876543
Q ss_pred ceEeCccccCCCCCC------------CCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCc
Q 002154 845 VKRVGNEFLGVESDT------------DGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLK 912 (959)
Q Consensus 845 l~~i~~~~~~~~~~~------------~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~ 912 (959)
...++..+....... .......+++|+.|+++++.-....+. .+..+++|+.|++++|.-..
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------EFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh------hHhcCCCCCEEECcCCcccC
Confidence 223333222110000 001123466777777776432222222 35678888888888876555
Q ss_pred CCCcCCCCCCCcceEEEccCcc
Q 002154 913 ALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 913 ~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
.+|..+..+++|+.|++++|..
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred ccChhhccCCCCcEEECcCcee
Confidence 5666667788899998888864
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2e-22 Score=254.52 Aligned_cols=359 Identities=18% Similarity=0.167 Sum_probs=224.4
Q ss_pred CcEEEEEeeeccCCC-CccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccc-ccccc
Q 002154 531 TKILHLMLTLYKGAS-VPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNF-IKDIP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~-~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~-~~~lp 608 (959)
.+++++.+..+.+.. .|. ..+++|++|.++++. +...+|..+.++++|++|+|++ +. ...+|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~---~~~~~p~~~~~l~~L~~L~L~~-------n~l~~~~p 181 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNM---LSGEIPNDIGSFSSLKVLDLGG-------NVLVGKIP 181 (968)
T ss_pred CCCCEEECcCCccccccCc------cccCCCCEEECcCCc---ccccCChHHhcCCCCCEEECcc-------CcccccCC
Confidence 567777776665542 121 256778888888776 3334666688888888888887 33 34678
Q ss_pred ccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCC
Q 002154 609 ENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIR 688 (959)
Q Consensus 609 ~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 688 (959)
..++++++|++|+|++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 88888888888888888744567888888888888888887755578888888888888888888554567777888888
Q ss_pred CCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCC--
Q 002154 689 LRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRE-- 766 (959)
Q Consensus 689 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 766 (959)
|++|.+..+... +.....+.++++|+.|++.++.- ....+..+..+++|+.|+++.+......+.......
T Consensus 262 L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 262 LQYLFLYQNKLS---GPIPPSIFSLQKLISLDLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred CCEEECcCCeee---ccCchhHhhccCcCEEECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 888877654432 22334455666677766654321 122233345566677777765542211100000000
Q ss_pred ----Cc-hhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeec
Q 002154 767 ----NE-EDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQ 840 (959)
Q Consensus 767 ----~~-~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~ 840 (959)
.. ......++..+..+++|+.|++++|.... .. |.++..+++|+.|++++|.....+| .++.+++|+.|++.
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~-~~-p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-EI-PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe-eC-ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 00 00001122233444555555555554432 02 4555555566666666554333444 35667777777777
Q ss_pred CccCceEeCccccCCCCCCCCccccCCCccceeeecccccccc-cccccccccccccCcccceeeeecCCCCcCCCcCCC
Q 002154 841 GMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEE-WDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLL 919 (959)
Q Consensus 841 ~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~-~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~ 919 (959)
+|.-...++.. +..+++|+.|+++++. +.. ++. ....+++|+.|++++|.....+|..+
T Consensus 413 ~n~l~~~~p~~------------~~~l~~L~~L~Ls~N~-l~~~~~~------~~~~l~~L~~L~L~~n~~~~~~p~~~- 472 (968)
T PLN00113 413 DNSFSGELPSE------------FTKLPLVYFLDISNNN-LQGRINS------RKWDMPSLQMLSLARNKFFGGLPDSF- 472 (968)
T ss_pred CCEeeeECChh------------HhcCCCCCEEECcCCc-ccCccCh------hhccCCCCcEEECcCceeeeecCccc-
Confidence 66532233322 2378999999999854 433 222 34578999999999998777777655
Q ss_pred CCCCcceEEEccCcc
Q 002154 920 QKSTLQGFGIYHCPI 934 (959)
Q Consensus 920 ~l~~L~~L~l~~c~~ 934 (959)
..++|+.|++++|..
T Consensus 473 ~~~~L~~L~ls~n~l 487 (968)
T PLN00113 473 GSKRLENLDLSRNQF 487 (968)
T ss_pred ccccceEEECcCCcc
Confidence 468999999999864
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.4e-24 Score=228.12 Aligned_cols=337 Identities=22% Similarity=0.243 Sum_probs=165.9
Q ss_pred cEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccc--cccc
Q 002154 532 KILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIK--DIPE 609 (959)
Q Consensus 532 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--~lp~ 609 (959)
.++++.+.......+|..+. .+.+|..|.+..|.. ..+ ..-++.++.||.+++.. +.++ -+|.
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~L---~~v-hGELs~Lp~LRsv~~R~-------N~LKnsGiP~ 97 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQL---ISV-HGELSDLPRLRSVIVRD-------NNLKNSGIPT 97 (1255)
T ss_pred heeEEEechhhhhhChHHHH----HHhhhhhhhhhhhhh---Hhh-hhhhccchhhHHHhhhc-------cccccCCCCc
Confidence 34444444444433333332 444555555544431 111 11144455555555554 2221 2455
Q ss_pred cccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCccCcCCCC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAGIDELIR 688 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 688 (959)
.|..|..|..||||+|. +++.|..+.+.+|+-.|+|++|. +.++|.. +.+|+-|-.|+++.| .+..+|+.+.+|.+
T Consensus 98 diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred hhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 55555555555555555 55555555555555555555544 5555543 235555555555554 45555555555555
Q ss_pred CCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCc
Q 002154 689 LRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENE 768 (959)
Q Consensus 689 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 768 (959)
||+|.+..+... ..-+..|+.++.|..|.+++. ...-..++.++..+.+|..++++.++
T Consensus 175 LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~T---qRTl~N~Ptsld~l~NL~dvDlS~N~--------------- 233 (1255)
T KOG0444|consen 175 LQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNT---QRTLDNIPTSLDDLHNLRDVDLSENN--------------- 233 (1255)
T ss_pred hhhhhcCCChhh---HHHHhcCccchhhhhhhcccc---cchhhcCCCchhhhhhhhhccccccC---------------
Confidence 555554433221 111222233333333333321 11112334445555666666666655
Q ss_pred hhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCc--
Q 002154 769 EDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSV-- 845 (959)
Q Consensus 769 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l-- 845 (959)
...+++.+...++|+.|+|++|..++ + .-......+|+.|+++.| .++.+| .+.+|+.|+.|.+.+.. +
T Consensus 234 ---Lp~vPecly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~F 305 (1255)
T KOG0444|consen 234 ---LPIVPECLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTF 305 (1255)
T ss_pred ---CCcchHHHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-ccc
Confidence 12345556666666666666666555 3 222334456666666666 555555 35566666666665421 1
Q ss_pred eEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcc
Q 002154 846 KRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQ 925 (959)
Q Consensus 846 ~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~ 925 (959)
..||+ ++..+.+|+.+...+ ++|+-++. ..+.|+.|+.|.+.. +.|..+|+.+.-++.|+
T Consensus 306 eGiPS------------GIGKL~~Levf~aan-N~LElVPE------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 306 EGIPS------------GIGKLIQLEVFHAAN-NKLELVPE------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLK 365 (1255)
T ss_pred cCCcc------------chhhhhhhHHHHhhc-cccccCch------hhhhhHHHHHhcccc-cceeechhhhhhcCCcc
Confidence 11111 122445555555554 44444443 355566666666643 45555666666666666
Q ss_pred eEEEccCcch
Q 002154 926 GFGIYHCPIL 935 (959)
Q Consensus 926 ~L~l~~c~~l 935 (959)
.|+++..|+|
T Consensus 366 vLDlreNpnL 375 (1255)
T KOG0444|consen 366 VLDLRENPNL 375 (1255)
T ss_pred eeeccCCcCc
Confidence 6666666665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.6e-23 Score=219.60 Aligned_cols=322 Identities=24% Similarity=0.246 Sum_probs=246.3
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
+++.|+++..+....+...+ .+++.||++.+..|... -.+++++ +-.+..|.+|||+. +.+.+.|..
T Consensus 55 qkLEHLs~~HN~L~~vhGEL----s~Lp~LRsv~~R~N~LK-nsGiP~d-iF~l~dLt~lDLSh-------NqL~EvP~~ 121 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGEL----SDLPRLRSVIVRDNNLK-NSGIPTD-IFRLKDLTILDLSH-------NQLREVPTN 121 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhh----ccchhhHHHhhhccccc-cCCCCch-hcccccceeeecch-------hhhhhcchh
Confidence 78899999888765444444 48999999999988642 2343444 66899999999999 889999999
Q ss_pred ccccCCccEEeeccCCCccccchhh-ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEAL-CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRL 689 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 689 (959)
+.+-+++-+|+||+|. |+.+|.++ -+|..|-.|||++|. +..||+.+..|.+|+.|.+++|+....--..+..|++|
T Consensus 122 LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL 199 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL 199 (1255)
T ss_pred hhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence 9999999999999999 99999865 489999999999987 99999999999999999999985322211223446667
Q ss_pred CccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCch
Q 002154 690 RSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEE 769 (959)
Q Consensus 690 ~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 769 (959)
++|.+......- ......+..|.+|+.++++..+ . ...+..+-+..+|+.|+|+.+.+.
T Consensus 200 ~vLhms~TqRTl--~N~Ptsld~l~NL~dvDlS~N~-L----p~vPecly~l~~LrrLNLS~N~it-------------- 258 (1255)
T KOG0444|consen 200 SVLHMSNTQRTL--DNIPTSLDDLHNLRDVDLSENN-L----PIVPECLYKLRNLRRLNLSGNKIT-------------- 258 (1255)
T ss_pred hhhhcccccchh--hcCCCchhhhhhhhhccccccC-C----CcchHHHhhhhhhheeccCcCcee--------------
Confidence 777665543322 2344556677778776665411 1 123455667889999999987621
Q ss_pred hhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc-CCCcCC-CCCCcCCCcceeecCccCceE
Q 002154 770 DKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR-NCEHLP-PLGKLPSLEDLWIQGMKSVKR 847 (959)
Q Consensus 770 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~l~-~l~~l~~L~~L~l~~~~~l~~ 847 (959)
.+--......+|++|+++.|..+. + |+.+..+++|++|.+.+|+ ..+.+| .+|+|.+|+.+...+ +.++-
T Consensus 259 ----eL~~~~~~W~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl 330 (1255)
T KOG0444|consen 259 ----ELNMTEGEWENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL 330 (1255)
T ss_pred ----eeeccHHHHhhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc
Confidence 111122234689999999999887 7 9999999999999999997 566788 589999999999977 44777
Q ss_pred eCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCC
Q 002154 848 VGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP 915 (959)
Q Consensus 848 i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp 915 (959)
+|+... .+++|+.|.|+. +.|-.++. .++-+|-|+.|+++.+|+|..-|
T Consensus 331 VPEglc------------RC~kL~kL~L~~-NrLiTLPe------aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 331 VPEGLC------------RCVKLQKLKLDH-NRLITLPE------AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Cchhhh------------hhHHHHHhcccc-cceeechh------hhhhcCCcceeeccCCcCccCCC
Confidence 776544 678999999987 67777775 57789999999999999998655
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.4e-19 Score=228.29 Aligned_cols=340 Identities=20% Similarity=0.198 Sum_probs=244.3
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.++|.+.+..+....+|..+ ...+|+.|.+.++. +.. ++..+..+++|+.|+|++ | ..+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L~~s~---l~~-L~~~~~~l~~Lk~L~Ls~-----~-~~l~~ip~- 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-----RPENLVKLQMQGSK---LEK-LWDGVHSLTGLRNIDLRG-----S-KNLKEIPD- 652 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-----CccCCcEEECcCcc---ccc-cccccccCCCCCEEECCC-----C-CCcCcCCc-
Confidence 56777877777666666554 46889999998876 333 455578899999999998 2 34677775
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
++.+++|++|+|++|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|.. .++|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 8899999999999998899999999999999999999999999999877 7999999999999877777753 35667
Q ss_pred ccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCCh---hhhHhhcccCCCCCCceEEeecCCCCCCccccccCCC
Q 002154 691 SVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDA---GEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRREN 767 (959)
Q Consensus 691 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 767 (959)
.|++..+.... +.....+++|..|.+..+...... ...........++|+.|+++.+..
T Consensus 729 ~L~L~~n~i~~-----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~------------- 790 (1153)
T PLN03210 729 WLDLDETAIEE-----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS------------- 790 (1153)
T ss_pred eeecCCCcccc-----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-------------
Confidence 77655443221 111124556666555543211000 000011112346899999987641
Q ss_pred chhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceE
Q 002154 768 EEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKR 847 (959)
Q Consensus 768 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~ 847 (959)
...++..+..+++|+.|+|++|..... + |..+ .+++|+.|++++|..+..+|.+ .++|+.|+|.++ .++.
T Consensus 791 ----l~~lP~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~ 860 (1153)
T PLN03210 791 ----LVELPSSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEE 860 (1153)
T ss_pred ----ccccChhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCcc
Confidence 122345677888999999999865542 5 5544 6899999999999888887754 468999999874 4666
Q ss_pred eCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCC---------
Q 002154 848 VGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHL--------- 918 (959)
Q Consensus 848 i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l--------- 918 (959)
+|..+ ..+++|+.|++++|++++.++. ....+++|+.|++++|++|..++..-
T Consensus 861 iP~si------------~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~ 922 (1153)
T PLN03210 861 VPWWI------------EKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT 922 (1153)
T ss_pred ChHHH------------hcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhc
Confidence 66532 2789999999999999999876 46678999999999999888654210
Q ss_pred ----CCCCCcceEEEccCcchH
Q 002154 919 ----LQKSTLQGFGIYHCPILE 936 (959)
Q Consensus 919 ----~~l~~L~~L~l~~c~~l~ 936 (959)
..+|+...+.+.+|.++.
T Consensus 923 ~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 923 DNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccccccCCchhccccccccCCC
Confidence 123344556677777664
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=6.5e-20 Score=194.95 Aligned_cols=319 Identities=20% Similarity=0.233 Sum_probs=209.0
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccch-
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPE- 633 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~- 633 (959)
...+|..|++.+|. +..+-.+.++-++.||+|||+. +.+.++|.. +..-.++++|+|++|. |+.+-.
T Consensus 123 ~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLSr-------N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~ 191 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLSR-------NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETG 191 (873)
T ss_pred cccceeEEeeeccc---cccccHHHHHhHhhhhhhhhhh-------chhhcccCCCCCCCCCceEEeecccc-ccccccc
Confidence 34456666666655 2222334466677777888877 666666543 4444678888888887 776643
Q ss_pred hhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccC-CccCcCCCCCCccCceeecCccCCCCCccccc
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYL-PAGIDELIRLRSVRKFVVGGGYDRACSLGSLK 711 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~ 711 (959)
.+.+|.+|-+|.|+.|. ++.+|.- +.+|++|+.|++..| .+..+ .-.+..|.+|+.|.+-.++........+..+.
T Consensus 192 ~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 56677788888888766 7777744 455888888888776 44433 22356677777777665554433333333333
Q ss_pred cCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEe
Q 002154 712 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVID 791 (959)
Q Consensus 712 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 791 (959)
++. .|++.. +.....-...+-+++.|+.|+++.+.+... -.++....+.|+.|+|+
T Consensus 270 kme---~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-----------------h~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 270 KME---HLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-----------------HIDSWSFTQKLKELDLS 325 (873)
T ss_pred ccc---eeeccc----chhhhhhcccccccchhhhhccchhhhhee-----------------ecchhhhcccceeEecc
Confidence 333 323321 111222234566778888888888763211 13456667899999999
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCc
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPK 869 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 869 (959)
.|...+ +++..+..+..|+.|.|+.| ..+++. .+..+.+|+.|+|++..--..|.+.. ..+.++|+
T Consensus 326 ~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa---------~~f~gl~~ 393 (873)
T KOG4194|consen 326 SNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA---------VAFNGLPS 393 (873)
T ss_pred cccccc--CChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch---------hhhccchh
Confidence 999888 87888889999999999998 555544 46678999999998754333343311 11347899
Q ss_pred cceeeecccccccccccccccccccccCcccceeeeecCCCCcCC-CcCCCCCCCcceEEEcc
Q 002154 870 LRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKAL-PDHLLQKSTLQGFGIYH 931 (959)
Q Consensus 870 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l-p~~l~~l~~L~~L~l~~ 931 (959)
|++|.|.+ ++++.++.. .+..+++|+.|++.+++ +.++ |..+.++ .|++|.+..
T Consensus 394 LrkL~l~g-Nqlk~I~kr-----Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKR-----AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecC-ceeeecchh-----hhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcc
Confidence 99999998 788888763 36678999999999964 4444 5566666 888888764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=8.3e-21 Score=193.18 Aligned_cols=200 Identities=26% Similarity=0.316 Sum_probs=125.9
Q ss_pred EEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccc
Q 002154 534 LHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEK 613 (959)
Q Consensus 534 r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~ 613 (959)
.-+.++.+.....|..+ +++..+.+|.++.++ ... +|.-+.+...|+.|+++. +.+.++|++++.
T Consensus 71 ~vl~~~~n~l~~lp~ai----g~l~~l~~l~vs~n~---ls~-lp~~i~s~~~l~~l~~s~-------n~~~el~~~i~~ 135 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAI----GELEALKSLNVSHNK---LSE-LPEQIGSLISLVKLDCSS-------NELKELPDSIGR 135 (565)
T ss_pred eEEEeccchhhhCCHHH----HHHHHHHHhhcccch---Hhh-ccHHHhhhhhhhhhhccc-------cceeecCchHHH
Confidence 33444444444344433 367777777777765 333 444466777778888877 667777888888
Q ss_pred cCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccC
Q 002154 614 LLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVR 693 (959)
Q Consensus 614 l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 693 (959)
+..|..|+..+|. +..+|..++++..|..|++.++. ++.+|+...+|+.|+||+...| .++.+|+.++.|.+|..|+
T Consensus 136 ~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHH
Confidence 8888888877777 77888888888888888887765 7777777666778888877665 6677777777777776666
Q ss_pred ceeecCccC---CC----------------CCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCC
Q 002154 694 KFVVGGGYD---RA----------------CSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHS 754 (959)
Q Consensus 694 ~~~~~~~~~---~~----------------~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 754 (959)
+..+..... .+ ...+.+++|+.|..|++.... + ...+..+..+++|+.|+++.+.+
T Consensus 213 L~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-l----ke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 213 LRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-L----KEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred hhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-c----ccCchHHHHhhhhhhhcccCCcc
Confidence 544332210 00 011223455555556655421 1 12233344566788888887764
Q ss_pred CC
Q 002154 755 RD 756 (959)
Q Consensus 755 ~~ 756 (959)
..
T Consensus 288 s~ 289 (565)
T KOG0472|consen 288 SS 289 (565)
T ss_pred cc
Confidence 33
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=4.5e-19 Score=188.61 Aligned_cols=323 Identities=20% Similarity=0.227 Sum_probs=177.3
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccc-hhhcc
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLP-EALCE 637 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp-~~i~~ 637 (959)
..++|++++|. +.++-+.+|.++++|+.+++.. +.++.+|...+...||+.|+|.+|. |.++- +++..
T Consensus 79 ~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~~-------N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLNK-------NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccc---cccCcHHHHhcCCcceeeeecc-------chhhhcccccccccceeEEeeeccc-cccccHHHHHh
Confidence 34455555554 2233344455555666666555 5555555555555555555555555 44332 24445
Q ss_pred CCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 638 LYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 638 L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
++-|++|||+.|. +.++|. .+..=.++++|++++| .++.+..+ +..+.+|-+|.+..+.... .....+++|++
T Consensus 148 l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~ 222 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPK 222 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccc---cCHHHhhhcch
Confidence 5555555555544 444442 2333345555555554 33333222 3444444444444333322 11222333333
Q ss_pred CCCceEeCCC--CC------------------CChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHH
Q 002154 716 LRQCSIDGLG--GV------------------SDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERL 775 (959)
Q Consensus 716 L~~L~i~~~~--~~------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (959)
|+.|++.... -+ +.+.......+-.+.+++.|+|..+.. ..+
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l------------------~~v 284 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL------------------QAV 284 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh------------------hhh
Confidence 3333332100 00 000111112233445555555555441 111
Q ss_pred -hhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccc
Q 002154 776 -LEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEF 852 (959)
Q Consensus 776 -l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~ 852 (959)
-.++..+..|+.|+++.|.+.+ +.++.-..+++|+.|+|++| .+..++ .+..|.+|+.|.|+. +.+.++.+..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a 360 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGA 360 (873)
T ss_pred hcccccccchhhhhccchhhhhe--eecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhH
Confidence 1255667788888888888777 43433357788888888887 555555 466678888888876 3466665443
Q ss_pred cCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCc-CCCCCCCcceEEEcc
Q 002154 853 LGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD-HLLQKSTLQGFGIYH 931 (959)
Q Consensus 853 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~l~~ 931 (959)
+ .++.+|+.|+|... .+ .|..+.+. ..+..+|+|++|.+.+ ++++.+|. .+..+++|++|++.+
T Consensus 361 f-----------~~lssL~~LdLr~N-~l-s~~IEDaa-~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 361 F-----------VGLSSLHKLDLRSN-EL-SWCIEDAA-VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred H-----------HHhhhhhhhcCcCC-eE-EEEEecch-hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 3 37789999999873 33 34443221 1345699999999999 58999984 577899999999998
Q ss_pred Ccc
Q 002154 932 CPI 934 (959)
Q Consensus 932 c~~ 934 (959)
.+.
T Consensus 426 Nai 428 (873)
T KOG4194|consen 426 NAI 428 (873)
T ss_pred Ccc
Confidence 864
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=9.9e-20 Score=185.40 Aligned_cols=330 Identities=23% Similarity=0.262 Sum_probs=240.6
Q ss_pred ccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccc
Q 002154 553 NVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLP 632 (959)
Q Consensus 553 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp 632 (959)
.+..+..+.+|.+.++. ... +|..+..+..+..|+.+. +.+.++|+.++.+..|+.|+++.|. +..+|
T Consensus 63 dl~nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs~-------n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~ 130 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVSH-------NKLSELPEQIGSLISLVKLDCSSNE-LKELP 130 (565)
T ss_pred hhhcccceeEEEeccch---hhh-CCHHHHHHHHHHHhhccc-------chHhhccHHHhhhhhhhhhhccccc-eeecC
Confidence 34478888888888886 334 455588888999999998 8899999999999999999999998 99999
Q ss_pred hhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCcccccc
Q 002154 633 EALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKK 712 (959)
Q Consensus 633 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~ 712 (959)
++|+.+..|+.|+..+|. +.++|.++.++.+|..|++.++ .+..+|+..-+++.|++|+...+... ....+++.
T Consensus 131 ~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~----tlP~~lg~ 204 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLE----TLPPELGG 204 (565)
T ss_pred chHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhh----cCChhhcc
Confidence 999999999999999876 9999999999999999999998 67888888777999999987554433 35667777
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhh-hCCCCCCCceEEEe
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLE-ALGPPPNLKKLVID 791 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~ 791 (959)
|..|..|++.... . .. ...+.+|..|++|++..+. .+.++. ....+++|..|++.
T Consensus 205 l~~L~~LyL~~Nk----i-~~-lPef~gcs~L~Elh~g~N~------------------i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 205 LESLELLYLRRNK----I-RF-LPEFPGCSLLKELHVGENQ------------------IEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred hhhhHHHHhhhcc----c-cc-CCCCCccHHHHHHHhcccH------------------HHhhHHHHhcccccceeeecc
Confidence 7777766665421 1 11 1246677788888887654 233333 34467899999999
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCCCC-------------
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVES------------- 857 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~------------- 857 (959)
+|...+ + |.-+.-+.+|.+|++++| .+..+| .+|+| +|+.|.+.|.+ +++|..+...+++
T Consensus 261 dNklke--~-Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 261 DNKLKE--V-PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred cccccc--C-chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 999888 7 888888999999999998 666666 78999 99999888765 3333222211111
Q ss_pred ----------CCCC-ccccCC------Cccceeeecccccccccccccc-------------------------------
Q 002154 858 ----------DTDG-SSVIAF------PKLRRLRFVCMEELEEWDCGTA------------------------------- 889 (959)
Q Consensus 858 ----------~~~~-~~~~~f------p~L~~L~l~~~~~L~~~~~~~~------------------------------- 889 (959)
.... .....| ...+.|++++ .+++.+|...+
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL 413 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence 0000 001123 3456666665 34444432100
Q ss_pred -------------cccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccC
Q 002154 890 -------------IKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHC 932 (959)
Q Consensus 890 -------------~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c 932 (959)
.+.....+++|..|++++ +-+.++|..++.+..|+.|+++..
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 011355789999999999 468889998888999999999865
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=5.5e-17 Score=182.47 Aligned_cols=84 Identities=27% Similarity=0.413 Sum_probs=49.4
Q ss_pred EEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccccc
Q 002154 533 ILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIE 612 (959)
Q Consensus 533 ~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 612 (959)
+..|.+.++....+|..+. .+.+|+.|.++.+. +.. .|....++++|++|.|.+ +.+..+|.++.
T Consensus 47 L~~l~lsnn~~~~fp~~it----~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~~-------n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQIT----LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLKN-------NRLQSLPASIS 111 (1081)
T ss_pred eEEeeccccccccCCchhh----hHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheecc-------chhhcCchhHH
Confidence 4455555555554555544 56666666666654 222 344456666666666666 55666666666
Q ss_pred ccCCccEEeeccCCCccccc
Q 002154 613 KLLHLKYLSLAHQEAIERLP 632 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~lp 632 (959)
.+++|.||++++|. ....|
T Consensus 112 ~lknl~~LdlS~N~-f~~~P 130 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIP 130 (1081)
T ss_pred hhhcccccccchhc-cCCCc
Confidence 66666666666665 44444
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=4.2e-17 Score=183.43 Aligned_cols=159 Identities=26% Similarity=0.376 Sum_probs=91.5
Q ss_pred CCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc----------------------CCCcCCC-CCCcCCCccee
Q 002154 782 PPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR----------------------NCEHLPP-LGKLPSLEDLW 838 (959)
Q Consensus 782 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~----------------------~~~~l~~-l~~l~~L~~L~ 838 (959)
+.+|++++++.+.... + |+|+..+.+|+.|...+|. .++.+|+ ++++.+|++|+
T Consensus 240 p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 4577777777777776 6 6777777777777666552 2333443 45588899999
Q ss_pred ecCccCceEeCccccCCCCC--------------------------------------CCCccccCCCccceeeeccccc
Q 002154 839 IQGMKSVKRVGNEFLGVESD--------------------------------------TDGSSVIAFPKLRRLRFVCMEE 880 (959)
Q Consensus 839 l~~~~~l~~i~~~~~~~~~~--------------------------------------~~~~~~~~fp~L~~L~l~~~~~ 880 (959)
|... .+..++..++..... .....+.+|++||.|+|++ +.
T Consensus 317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-Nr 394 (1081)
T KOG0618|consen 317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NR 394 (1081)
T ss_pred ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cc
Confidence 8753 355555433221100 0012345778888888888 56
Q ss_pred ccccccccccccccccCcccceeeeecCCCCcCCCc----------------------CCCCCCCcceEEEccCcchHHh
Q 002154 881 LEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD----------------------HLLQKSTLQGFGIYHCPILEER 938 (959)
Q Consensus 881 L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~----------------------~l~~l~~L~~L~l~~c~~l~~~ 938 (959)
|..++.. ....++.|+.|.+++ ++|+.+|. .+..++.|+.+|++ |.+|.+.
T Consensus 395 L~~fpas-----~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 395 LNSFPAS-----KLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred cccCCHH-----HHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhh
Confidence 6665542 244556666666666 34554433 33446777777764 4445443
Q ss_pred hccCCCCCCcccCCC
Q 002154 939 YREKTGEDWPKIRHI 953 (959)
Q Consensus 939 ~~~~~~~~~~~i~hi 953 (959)
.- .....|+.++|+
T Consensus 468 ~l-~~~~p~p~LkyL 481 (1081)
T KOG0618|consen 468 TL-PEALPSPNLKYL 481 (1081)
T ss_pred hh-hhhCCCccccee
Confidence 22 234456666554
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=8.3e-15 Score=175.12 Aligned_cols=344 Identities=24% Similarity=0.285 Sum_probs=233.1
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccc--cccccc-cccccCCccEEeeccCCCccccc
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNF--IKDIPE-NIEKLLHLKYLSLAHQEAIERLP 632 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~--~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp 632 (959)
.....|...+.++... . .+. -...+.|+.|-+.+ +. +..++. .+..+++|++|||++|..+..||
T Consensus 521 ~~~~~rr~s~~~~~~~---~-~~~-~~~~~~L~tLll~~-------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE---H-IAG-SSENPKLRTLLLQR-------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchh---h-ccC-CCCCCccceEEEee-------cchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 5567788887776532 2 222 23445799999887 42 455544 47789999999999999899999
Q ss_pred hhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCcccccc
Q 002154 633 EALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKK 712 (959)
Q Consensus 633 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~ 712 (959)
++|++|.+||+|+++++. +..+|.++.+|++|.||++..+..+..+|.....|++|++|.++... .......+.++.+
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELEN 666 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhc
Confidence 999999999999999977 99999999999999999999987776776556669999999988765 2223567788888
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCc----eEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceE
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFD----LDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKL 788 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 788 (959)
|.+|+.+++...+. .....+..+..|.+ +.+..+. .......+..+.+|+.|
T Consensus 667 Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~------------------~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 667 LEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS------------------KRTLISSLGSLGNLEEL 722 (889)
T ss_pred ccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc------------------cceeecccccccCcceE
Confidence 88888888754321 11111223333332 2221111 12234466778899999
Q ss_pred EEeeeCCCCCCCCcChhh-----c-ccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCc
Q 002154 789 VIDEYRGRRNVVPINWIM-----S-LTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGS 862 (959)
Q Consensus 789 ~l~~~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 862 (959)
.|.++.+.. ....|.. . ++++.++.+.+|.....+.+....|+|+.|.+..|..++.+-...-..... ..
T Consensus 723 ~i~~~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~ 798 (889)
T KOG4658|consen 723 SILDCGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KE 798 (889)
T ss_pred EEEcCCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--cc
Confidence 999998865 2233422 2 668888888888878777777788999999999998776654322111100 00
Q ss_pred cccCCCcccee-eecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccC-cchHHhhc
Q 002154 863 SVIAFPKLRRL-RFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHC-PILEERYR 940 (959)
Q Consensus 863 ~~~~fp~L~~L-~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c-~~l~~~~~ 940 (959)
....|+++..+ .+.+.+.+.++.. ....+++|+.+.+..||++..+| .+.++.+.+| +.+.....
T Consensus 799 ~i~~f~~~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 799 LILPFNKLEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred EEecccccccceeeecCCCCceeEe------cccCccchhheehhcCcccccCc-------cccccceeccccceeecCC
Confidence 13467777777 4666666665544 23456779999999999888776 4556667776 44333221
Q ss_pred c--CCCCCCcccCCCC
Q 002154 941 E--KTGEDWPKIRHIP 954 (959)
Q Consensus 941 ~--~~~~~~~~i~hi~ 954 (959)
. ..+.+|.+-+..+
T Consensus 866 ~~~~~~v~~~~~~~~~ 881 (889)
T KOG4658|consen 866 GEWLEGVYWEDELTKL 881 (889)
T ss_pred ccceeeEEehhhhhhh
Confidence 1 2344555544443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=2.4e-13 Score=158.96 Aligned_cols=256 Identities=21% Similarity=0.196 Sum_probs=139.2
Q ss_pred cccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccC
Q 002154 586 CLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKL 665 (959)
Q Consensus 586 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 665 (959)
.-.+|+|++ +.+..+|..+. .+|+.|++++|. ++.+|.. +++|++|++++|. ++.+|.. .++|
T Consensus 202 ~~~~LdLs~-------~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL 264 (788)
T PRK15387 202 GNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGL 264 (788)
T ss_pred CCcEEEcCC-------CCCCcCCcchh--cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCCc-cCcccCc---cccc
Confidence 345566666 44556666554 356666666665 6666642 4566666666654 5556542 2455
Q ss_pred CeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCC
Q 002154 666 MYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLF 745 (959)
Q Consensus 666 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 745 (959)
++|++++| .+..+|... ++|+.|.+..+.... +.. .+++|+.|++.+.. +... +. ...+|+
T Consensus 265 ~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~-----LP~--~p~~L~~LdLS~N~-L~~L----p~---lp~~L~ 325 (788)
T PRK15387 265 LELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTS-----LPV--LPPGLQELSVSDNQ-LASL----PA---LPSELC 325 (788)
T ss_pred ceeeccCC-chhhhhhch---hhcCEEECcCCcccc-----ccc--cccccceeECCCCc-cccC----CC---Cccccc
Confidence 66666655 344444322 233444333222111 000 12344544444321 1110 00 112455
Q ss_pred ceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcC
Q 002154 746 DLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHL 825 (959)
Q Consensus 746 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 825 (959)
.|.++.+.+.. ++ . .+.+|+.|++++|.... + |.. .++|+.|++++| .+..+
T Consensus 326 ~L~Ls~N~L~~------------------LP-~--lp~~Lq~LdLS~N~Ls~--L-P~l---p~~L~~L~Ls~N-~L~~L 377 (788)
T PRK15387 326 KLWAYNNQLTS------------------LP-T--LPSGLQELSVSDNQLAS--L-PTL---PSELYKLWAYNN-RLTSL 377 (788)
T ss_pred ccccccCcccc------------------cc-c--cccccceEecCCCccCC--C-CCC---Ccccceehhhcc-ccccC
Confidence 66665554210 11 1 12467888888877766 5 432 356777777776 45556
Q ss_pred CCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeee
Q 002154 826 PPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSI 905 (959)
Q Consensus 826 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i 905 (959)
|.+ .++|+.|+++++. +..++. .+++|+.|++++ +.++.++. .+.+|+.|++
T Consensus 378 P~l--~~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdLS~-N~LssIP~---------l~~~L~~L~L 429 (788)
T PRK15387 378 PAL--PSGLKELIVSGNR-LTSLPV---------------LPSELKELMVSG-NRLTSLPM---------LPSGLLSLSV 429 (788)
T ss_pred ccc--ccccceEEecCCc-ccCCCC---------------cccCCCEEEccC-CcCCCCCc---------chhhhhhhhh
Confidence 643 3567788886643 443332 235678888887 35665543 2346777888
Q ss_pred ecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 906 VYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 906 ~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
++| .++.+|..+..+++|+.|++++++.
T Consensus 430 s~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 430 YRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccC-cccccChHHhhccCCCeEECCCCCC
Confidence 774 6777887777788888888887763
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=9.8e-12 Score=156.71 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=180.9
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE-PFDEFRIARA 242 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~ 242 (959)
.+.++-|+.-.+ .|.. ....+++.|+|++|.||||++..+.+. ++.++|+++.. ..++..+...
T Consensus 13 ~~~~~~R~rl~~----~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLA----KLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHH----HHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 345666664444 4432 235789999999999999999998862 22588999964 4466667777
Q ss_pred HHHHhCCCCCc------------ccccHHHHHHHHHHHHhc-CcEEEEEeccCCCCCcCCchhHh-hhcCCCCCCCEEEE
Q 002154 243 IIEALKPGSAK------------ELVEFQSLMQHIQEYVVE-GEKFLLVLDDVWNEDYGKWEPFY-NCLKSSPHGSKLLI 308 (959)
Q Consensus 243 i~~~l~~~~~~------------~~~~~~~~~~~l~~~~l~-~k~~LlVlDdv~~~~~~~~~~l~-~~l~~~~~gs~iiv 308 (959)
++..+...... ...+...+...+...+.. +.+++|||||+...+......+. ..+.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77776411100 011223333333333122 68999999999765444444333 33444456778989
Q ss_pred eccchhH---HHhhcccceEecC----CCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhc
Q 002154 309 TTRKETV---ALIMGSTQVISVN----ELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLL 381 (959)
Q Consensus 309 Ttr~~~v---~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~ 381 (959)
|||.... ..........++. +|+.+|+.++|....... . ..+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9997421 1111112345555 999999999997654211 1 233445899999999999999988775
Q ss_pred CCCC-HHHHHHHHhhhhhhhhh-ccccchHHHH-hhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCC
Q 002154 382 SKNT-EKEWQNILESEIWELEA-IEKGLLAPLL-LSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGA 458 (959)
Q Consensus 382 ~~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~ 458 (959)
.... .... . +.+.. ....+...+. -.++.||++.+..+...|+++ .++.+.+- .+..
T Consensus 231 ~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~---- 290 (903)
T PRK04841 231 QNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTG---- 290 (903)
T ss_pred hCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcC----
Confidence 4432 1110 0 11111 1122444433 347899999999999999996 33333221 1111
Q ss_pred CcHHHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHh
Q 002154 459 KEMEDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLC 506 (959)
Q Consensus 459 ~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 506 (959)
.+.+...+++|.+.+++.....+ ....|+.|++++++++...
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeecC---CCCEEehhHHHHHHHHHHH
Confidence 12246789999999997532211 1136888999999998765
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=7.1e-11 Score=133.30 Aligned_cols=317 Identities=16% Similarity=0.138 Sum_probs=186.1
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.+..++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 234456789999999999999999985322221234567777777788899999
Q ss_pred HHHHhCC-CCCcccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCC----cCCchhHhhhcCCCCCCCE--EEEeccch
Q 002154 243 IIEALKP-GSAKELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNED----YGKWEPFYNCLKSSPHGSK--LLITTRKE 313 (959)
Q Consensus 243 i~~~l~~-~~~~~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~ 313 (959)
++.++.. .......+.+.+...+.+. ++ +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++...
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEY-LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHH-HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999873 1222233455666666665 43 567899999997532 1122222222222 12333 56666554
Q ss_pred hHHHhhc-------ccceEecCCCChhhhHHHHHHhhccC--CCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh--c-
Q 002154 314 TVALIMG-------STQVISVNELSEMECWSVFESLAFFG--KSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL--L- 381 (959)
Q Consensus 314 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l--~- 381 (959)
.+..... ....+.+.+++.++..+++..++..+ .....+..++.+++......|..+.|+..+-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 13468999999999999998876322 1112333344444444444566777777664432 1
Q ss_pred -C-CC--CHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhcccC--CceechhHHHHH--HHHhccc
Q 002154 382 -S-KN--TEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLK--DYEIRKHKLIEL--WMAQGYL 453 (959)
Q Consensus 382 -~-~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~Li~~--W~a~g~i 453 (959)
. .. +.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 455665555432 0122345678999988876665553321 134555555432 2332211
Q ss_pred ccCCCCcHHHHHHHHHHHHHHccCcccccC--CCCCcccEEEECh
Q 002154 454 SEKGAKEMEDIGEEYFNILARRSFFQDFDK--GYDGEISTYKMHD 496 (959)
Q Consensus 454 ~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~mHd 496 (959)
.. .. .......|+++|...++|..... +..|+.+.++++.
T Consensus 334 ~~--~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 334 YE--PR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred CC--cC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 10 11 12345669999999999986432 3345556666653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=4.7e-12 Score=148.29 Aligned_cols=97 Identities=26% Similarity=0.295 Sum_probs=59.0
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccC
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCEL 638 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L 638 (959)
+|+.|.+.+|.. .. +|. .+++|++|+|++ |.+..+|.. ..+|+.|++++|. +..+|.. .
T Consensus 223 ~L~~L~L~~N~L---t~-LP~---lp~~Lk~LdLs~-------N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p 281 (788)
T PRK15387 223 HITTLVIPDNNL---TS-LPA---LPPELRTLEVSG-------NQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---P 281 (788)
T ss_pred CCCEEEccCCcC---CC-CCC---CCCCCcEEEecC-------CccCcccCc---ccccceeeccCCc-hhhhhhc---h
Confidence 566777666652 22 222 245677777776 556666643 3567777777776 6666652 2
Q ss_pred CCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCc
Q 002154 639 YNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPA 681 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 681 (959)
.+|+.|++++|. ++.+|.. +++|++|++++| .+..+|.
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCC
Confidence 456677777765 6666653 356777777766 4555554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.8e-14 Score=128.19 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=122.8
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+++...|.++.++ +.. .|..+..+++|.+|++++ +.++++|.+|+.++.||.|+++-|+ +..+|..+
T Consensus 31 ~~s~ITrLtLSHNK---l~~-vppnia~l~nlevln~~n-------nqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK---LTV-VPPNIAELKNLEVLNLSN-------NQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCc---eee-cCCcHHHhhhhhhhhccc-------chhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 67777888888877 333 344478899999999998 8899999999999999999999888 88899999
Q ss_pred ccCCCCcEEecCCCc-CCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCC
Q 002154 636 CELYNLERLNVSGCS-HLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLN 714 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 714 (959)
+.++-|+.||+..|. +-..+|..+..|.-|+-|+++++ .+..+|+.+++|++||.|....++.-+ ...+++.|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLT 173 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHH
Confidence 999999999998655 23568988989999999999988 678899999999999998876655433 556667777
Q ss_pred CCCCceEeC
Q 002154 715 LLRQCSIDG 723 (959)
Q Consensus 715 ~L~~L~i~~ 723 (959)
.|+.|.|.+
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 777777765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=2.9e-12 Score=151.19 Aligned_cols=91 Identities=22% Similarity=0.295 Sum_probs=49.9
Q ss_pred cccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccC
Q 002154 586 CLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKL 665 (959)
Q Consensus 586 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 665 (959)
+..+|++++ ..+..+|..+. .+|+.|+|++|. ++.+|..+. .+|++|++++|. ++.+|..+. .+|
T Consensus 179 ~~~~L~L~~-------~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKI-------LGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCC-------CCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 445666665 44555555443 356666666665 666665443 366666666654 556665443 356
Q ss_pred CeeecCCccccccCCccCcCCCCCCccCc
Q 002154 666 MYLYNAGTDSLRYLPAGIDELIRLRSVRK 694 (959)
Q Consensus 666 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 694 (959)
+.|++++| .+..+|..+. ++|+.|++
T Consensus 244 ~~L~Ls~N-~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 244 QEMELSIN-RITELPERLP--SALQSLDL 269 (754)
T ss_pred cEEECcCC-ccCcCChhHh--CCCCEEEC
Confidence 66666665 3445554432 24444433
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=3.2e-09 Score=118.61 Aligned_cols=304 Identities=13% Similarity=0.095 Sum_probs=175.7
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc-ccc---ceeEEEEeCCCCCHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK-RNF---QKRIWVCVSEPFDEFR 238 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~ 238 (959)
.+..++||++++++|..++..... +.....+.|+|++|+|||++++.++++.... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864321 2345678999999999999999999852111 111 1356888877778889
Q ss_pred HHHHHHHHhC---CCCCcccccHHHHHHHHHHHHh-cCcEEEEEeccCCCCCcCCchhHhhh-cCC----CC--CCCEEE
Q 002154 239 IARAIIEALK---PGSAKELVEFQSLMQHIQEYVV-EGEKFLLVLDDVWNEDYGKWEPFYNC-LKS----SP--HGSKLL 307 (959)
Q Consensus 239 ~~~~i~~~l~---~~~~~~~~~~~~~~~~l~~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~-l~~----~~--~gs~ii 307 (959)
++..|+.++. ........+..++...+.+.+. .+++++||||+++.-. .....+... +.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 1222222334445555555411 3578999999996542 111222222 211 11 223455
Q ss_pred EeccchhHHHhh-----cc--cceEecCCCChhhhHHHHHHhhccC-CCCCCCchHHHHHHHHHHhcCCchhHHHHHH-H
Q 002154 308 ITTRKETVALIM-----GS--TQVISVNELSEMECWSVFESLAFFG-KSMQERENLEKIGWEIVRKCKGLPLAAKTIA-S 378 (959)
Q Consensus 308 vTtr~~~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~-~ 378 (959)
++|+.......+ .. ...+.+.|.+.++..+++..++... ......++..+...+++....|.|..+..+. .
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555443322111 11 2468899999999999999886421 1112233344455567777789885443322 2
Q ss_pred Hh----cC-C--CCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhccc--CCceechhHHHHHHH-
Q 002154 379 LL----LS-K--NTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFL--KDYEIRKHKLIELWM- 448 (959)
Q Consensus 379 ~l----~~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~Li~~W~- 448 (959)
+. .. . -+.++...+.+... .....-++..||.+.|..+..++..- .+..+....+...+-
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 11 1 13444444443220 12234466789988887666554322 333456666666331
Q ss_pred -HhcccccCCCCcHHHHHHHHHHHHHHccCccccc
Q 002154 449 -AQGYLSEKGAKEMEDIGEEYFNILARRSFFQDFD 482 (959)
Q Consensus 449 -a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 482 (959)
++. +.. ..........++..|...|++....
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 221 111 1123466788899999999998753
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.1e-11 Score=146.48 Aligned_cols=244 Identities=19% Similarity=0.241 Sum_probs=139.3
Q ss_pred EEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccc
Q 002154 534 LHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEK 613 (959)
Q Consensus 534 r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~ 613 (959)
..+.+.......+|..+. +.++.|.+.+|. +.. +|..+. .+|++|++++ +.+..+|..+.
T Consensus 181 ~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~---Lts-LP~~l~--~nL~~L~Ls~-------N~LtsLP~~l~- 240 (754)
T PRK15370 181 TELRLKILGLTTIPACIP------EQITTLILDNNE---LKS-LPENLQ--GNIKTLYANS-------NQLTSIPATLP- 240 (754)
T ss_pred eEEEeCCCCcCcCCcccc------cCCcEEEecCCC---CCc-CChhhc--cCCCEEECCC-------CccccCChhhh-
Confidence 445555555544444332 468888888876 333 333232 4788888888 56777776554
Q ss_pred cCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccC
Q 002154 614 LLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVR 693 (959)
Q Consensus 614 l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 693 (959)
.+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++| .+..+|..+. ++|+.|+
T Consensus 241 -~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLN 310 (754)
T ss_pred -ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHH
Confidence 478888888888 888887664 478888888765 778887664 47888888887 5666665432 2444444
Q ss_pred ceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHH
Q 002154 694 KFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDE 773 (959)
Q Consensus 694 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 773 (959)
+..+.... + + ..+ .++|+.|.++.+....
T Consensus 311 Ls~N~Lt~--------L-----------------P-------~~l--~~sL~~L~Ls~N~Lt~----------------- 339 (754)
T PRK15370 311 VQSNSLTA--------L-----------------P-------ETL--PPGLKTLEAGENALTS----------------- 339 (754)
T ss_pred hcCCcccc--------C-----------------C-------ccc--cccceeccccCCcccc-----------------
Confidence 43221111 0 0 000 1245555555443111
Q ss_pred HHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCcccc
Q 002154 774 RLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFL 853 (959)
Q Consensus 774 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 853 (959)
++..+ +++|+.|++++|.... + |..+ .++|+.|+|++| .+..+|.- -.++|+.|+++++. +..+|..+.
T Consensus 340 -LP~~l--~~sL~~L~Ls~N~L~~--L-P~~l--p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~sl~ 408 (754)
T PRK15370 340 -LPASL--PPELQVLDVSKNQITV--L-PETL--PPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRNN-LVRLPESLP 408 (754)
T ss_pred -CChhh--cCcccEEECCCCCCCc--C-Chhh--cCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccCC-cccCchhHH
Confidence 11111 2467777777776654 5 4433 356777777776 44455421 12356777776643 555554332
Q ss_pred CCCCCCCCccccCCCccceeeecc
Q 002154 854 GVESDTDGSSVIAFPKLRRLRFVC 877 (959)
Q Consensus 854 ~~~~~~~~~~~~~fp~L~~L~l~~ 877 (959)
... ..+|++..|.+.+
T Consensus 409 ~~~--------~~~~~l~~L~L~~ 424 (754)
T PRK15370 409 HFR--------GEGPQPTRIIVEY 424 (754)
T ss_pred HHh--------hcCCCccEEEeeC
Confidence 211 1346667777666
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=7.2e-10 Score=118.12 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=117.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHH----HHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQ----SLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~l~ 266 (959)
+.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..++..++... .. .+.. .+...+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~-~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLET-EG-RDKAALLRELEDFLI 116 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCC-CC-CCHHHHHHHHHHHHH
Confidence 35689999999999999999999853321 11 12233 3334577889999998886322 21 2222 2333333
Q ss_pred HHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC---CCCCEEEEeccchhHHHhhc----------ccceEecCCCChh
Q 002154 267 EYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS---PHGSKLLITTRKETVALIMG----------STQVISVNELSEM 333 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~ 333 (959)
.....+++.+||+||+|..+...++.+....... .....|++|.... ....+. ....+++.+++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 3324678899999999887655666655332211 2223455655432 211111 1346789999999
Q ss_pred hhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 334 ECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 334 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
|..+++...+...+......-..+..+.|++.++|.|..++.++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988765332211122335677799999999999999999876
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=3.1e-13 Score=122.37 Aligned_cols=159 Identities=26% Similarity=0.271 Sum_probs=82.0
Q ss_pred ccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCcc
Q 002154 613 KLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSV 692 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 692 (959)
++.+...|-||+|+ ++..|..|..|.||+.|++.+|. ++++|..+..|++|++|+++-+ .+..+|.|+|.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 34444555555555 55555555555555555555544 5555555555555555555544 444555555555555555
Q ss_pred CceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhH
Q 002154 693 RKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKD 772 (959)
Q Consensus 693 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 772 (959)
++..+.... ... +.++-.+..|+.|+++.++ .
T Consensus 108 dltynnl~e--~~l----------------------------pgnff~m~tlralyl~dnd------------------f 139 (264)
T KOG0617|consen 108 DLTYNNLNE--NSL----------------------------PGNFFYMTTLRALYLGDND------------------F 139 (264)
T ss_pred hcccccccc--ccC----------------------------CcchhHHHHHHHHHhcCCC------------------c
Confidence 443322111 000 0111122333444444333 2
Q ss_pred HHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC
Q 002154 773 ERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP 826 (959)
Q Consensus 773 ~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 826 (959)
+.++..++.+++|+-|.+.++.... + |.-++.+..|+.|++.+| .++-+|
T Consensus 140 e~lp~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 140 EILPPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ccCChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccc-eeeecC
Confidence 2234445556666666666666665 5 666677777777777776 444444
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2.6e-09 Score=121.36 Aligned_cols=299 Identities=18% Similarity=0.212 Sum_probs=187.9
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARA 242 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~ 242 (959)
+...+-|. ++++.|.. ..+.+.+.|..|+|.|||||+...+. ....=..+.|.++.+. .++..+..-
T Consensus 18 ~~~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHH
Confidence 44455554 45555542 23789999999999999999999975 1122345789998764 567888888
Q ss_pred HHHHhCCCCCc------------ccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCCcCCchh-HhhhcCCCCCCCEEE
Q 002154 243 IIEALKPGSAK------------ELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNEDYGKWEP-FYNCLKSSPHGSKLL 307 (959)
Q Consensus 243 i~~~l~~~~~~------------~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ii 307 (959)
++..+..-.+. ...+...+...+... +. .++..+||||..-........ +.-.+...+.+-.+|
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~E-la~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNE-LASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHH-HHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 88888622111 112233344444332 22 568999999986544344444 444455667888999
Q ss_pred EeccchhHH---HhhcccceEec----CCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 308 ITTRKETVA---LIMGSTQVISV----NELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 308 vTtr~~~v~---~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
||||+..-. +.--....+++ -.|+.+|+-++|..... ..-+ +.-.+.+.+..+|.+-|+..++-.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld----~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLD----AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCC----hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 999986322 11111222333 34889999999987641 1112 2334589999999999999999888
Q ss_pred cCCCCHHHHHHHHhhhhhhhhhccccchH-HHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCC
Q 002154 381 LSKNTEKEWQNILESEIWELEAIEKGLLA-PLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAK 459 (959)
Q Consensus 381 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~ 459 (959)
+.+.+.+.--..+. +....+.. ...--++.||+++|..++-||+++.- -..|+..-
T Consensus 238 ~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------------ 294 (894)
T COG2909 238 RNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------------ 294 (894)
T ss_pred cCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------------
Confidence 84443332222111 11111111 12334789999999999999999532 12232222
Q ss_pred cHHHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhcc
Q 002154 460 EMEDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCRN 508 (959)
Q Consensus 460 ~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~ 508 (959)
+-++-+...+++|.+++|+-..-.+ ....|+.|.+..||.+.-...
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecC---CCceeehhHHHHHHHHhhhcc
Confidence 1124477789999999998753332 224799999999998766544
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=1.1e-10 Score=121.83 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=100.9
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH----
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA---- 242 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~---- 242 (959)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-...+|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999988643 3578999999999999999999984 3221123445554444322221111
Q ss_pred ---------HHHHhCCCCC----------cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC------cCCchhHhhhc
Q 002154 243 ---------IIEALKPGSA----------KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED------YGKWEPFYNCL 297 (959)
Q Consensus 243 ---------i~~~l~~~~~----------~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~------~~~~~~l~~~l 297 (959)
+...+. ... ........+.+.+.. .+++++||+||+.... ......+...+
T Consensus 73 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~ 148 (234)
T PF01637_consen 73 SLADELSEALGISIP-SITLEKISKDLSEDSFSALERLLEKLKK---KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLL 148 (234)
T ss_dssp HHHCHCHHHHHHHCC-TSTTEEEECTS-GG-G--HHHHHHHHHH---CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc-cccchhhhhcchhhHHHHHHHHHHHHHh---cCCcEEEEEecHHHHhhcccchHHHHHHHHHHH
Confidence 111221 110 011222333333332 2445999999995433 01112233333
Q ss_pred CC--CCCCCEEEEeccchhHHHh--------hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcC
Q 002154 298 KS--SPHGSKLLITTRKETVALI--------MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCK 367 (959)
Q Consensus 298 ~~--~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 367 (959)
.. ......+|++..+...... .+....+.+++|+.+++++++...+... . .. +.-.+..++|+..+|
T Consensus 149 ~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~g 225 (234)
T PF01637_consen 149 DSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTG 225 (234)
T ss_dssp HH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHT
T ss_pred hhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhC
Confidence 33 1223344455444433322 2334469999999999999999876432 1 11 123445579999999
Q ss_pred CchhHHHH
Q 002154 368 GLPLAAKT 375 (959)
Q Consensus 368 G~Plai~~ 375 (959)
|+|..|..
T Consensus 226 G~P~~l~~ 233 (234)
T PF01637_consen 226 GNPRYLQE 233 (234)
T ss_dssp T-HHHHHH
T ss_pred CCHHHHhc
Confidence 99998864
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=1.4e-11 Score=126.47 Aligned_cols=268 Identities=20% Similarity=0.191 Sum_probs=173.5
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccch-hh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPE-AL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~-~i 635 (959)
+....+.+..|. +..+++..|+.+++||.|||+. +.|..+ |+.+..+..|-.|-+-++..|+++|+ .+
T Consensus 67 ~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~-------N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSK-------NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcceEEEeccCC---cccCChhhccchhhhceecccc-------cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 344556666665 6677888899999999999999 777776 88899999988887666333999998 67
Q ss_pred ccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCccccccCCc-cCcCCCCCCccCceeecCccCCCCCccccccC
Q 002154 636 CELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRYLPA-GIDELIRLRSVRKFVVGGGYDRACSLGSLKKL 713 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L 713 (959)
++|..||.|.+.-|. +..++ ..+..|++|..|.+..+ .+..++. .+..+.+++++.......-. +.+|
T Consensus 137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--------dCnL 206 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--------DCNL 206 (498)
T ss_pred hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--------cccc
Confidence 899999999998876 55554 56889999999999888 6677776 47778888888765443221 2222
Q ss_pred CCCCC-ce-----EeCCCCCCChh--hhHhhcccCCCC---CCce----EEeecCCCCCCccccccCCCchhhHHHHhhh
Q 002154 714 NLLRQ-CS-----IDGLGGVSDAG--EARRAELEKKKN---LFDL----DLHFGHSRDGDEEQAGRRENEEDKDERLLEA 778 (959)
Q Consensus 714 ~~L~~-L~-----i~~~~~~~~~~--~~~~~~l~~~~~---L~~L----~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 778 (959)
+.|.. +. ..+..-+.... ......+...+. ++++ ...+.. ...... ..
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--------------d~~cP~---~c 269 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--------------DSICPA---KC 269 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--------------CCcChH---HH
Confidence 22211 00 00000000000 000000000111 1111 011100 000011 13
Q ss_pred CCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCC
Q 002154 779 LGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVE 856 (959)
Q Consensus 779 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 856 (959)
+..+++|+.|++++|.... +.+.||..+.+++.|.|..| +++.+. .+..+..|+.|+|++. .|+.+....+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-- 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-- 343 (498)
T ss_pred HhhcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEeccccc--
Confidence 5667899999999999888 77899999999999999998 555554 5778999999999984 47777655443
Q ss_pred CCCCCccccCCCccceeeecc
Q 002154 857 SDTDGSSVIAFPKLRRLRFVC 877 (959)
Q Consensus 857 ~~~~~~~~~~fp~L~~L~l~~ 877 (959)
...+|.+|.+-.
T Consensus 344 ---------~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 344 ---------TLFSLSTLNLLS 355 (498)
T ss_pred ---------ccceeeeeehcc
Confidence 344666666654
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=9.1e-10 Score=120.09 Aligned_cols=280 Identities=18% Similarity=0.141 Sum_probs=149.4
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
-.+|+|+++.++.+..++..... .......+.|+|++|+||||||+.+++. ....+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHH
Confidence 35799999999999888754221 1234567889999999999999999985 22222 112211 11122223334
Q ss_pred HHHhCCCCCcccccH----HHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHHhh
Q 002154 244 IEALKPGSAKELVEF----QSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVALIM 319 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~----~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 319 (959)
+..+..+..--.++. ....+.+... +.+.+..+|+|+..+... +...+ .+.+-|..|++...+...+
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~-~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPA-MEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHH-HHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHH
Confidence 444331110000011 1122333343 455566666666533211 01111 1234455566644333221
Q ss_pred c--ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhhhh
Q 002154 320 G--STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILESEI 397 (959)
Q Consensus 320 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~~~ 397 (959)
. ....+++.+++.++..+++.+.+...... --.+....|++.|+|.|-.+..+...+. .|........
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~ 237 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV 237 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC
Confidence 1 13468999999999999999887543221 2234566899999999975555554331 2221111000
Q ss_pred hhhhhccccchHHHHhhhcCCChhhHHHHh-HhhcccCCceechhHHHHHHHHhcccccCCCCcHHHHHHHHHH-HHHHc
Q 002154 398 WELEAIEKGLLAPLLLSYKELPSKVKRCFS-YCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFN-ILARR 475 (959)
Q Consensus 398 ~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~~~~~~~-~L~~~ 475 (959)
-. ...-......+...|..|++..+..+. ....|+.+ .+..+.+-... | . + .+.++..++ .|++.
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~-~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E-E----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C-C----cchHHHHhhHHHHHc
Confidence 00 000012234456677889888777775 66777655 45555442222 1 1 1 233444555 89999
Q ss_pred cCccccc
Q 002154 476 SFFQDFD 482 (959)
Q Consensus 476 ~ll~~~~ 482 (959)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997443
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=6.3e-10 Score=120.71 Aligned_cols=277 Identities=18% Similarity=0.133 Sum_probs=145.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+|+|+++.+++|..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 3699999999999998864322 12345668899999999999999999842 2222 11221111111 1222223
Q ss_pred HHhCCCCCcccccH----HHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHHhhc
Q 002154 245 EALKPGSAKELVEF----QSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVALIMG 320 (959)
Q Consensus 245 ~~l~~~~~~~~~~~----~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 320 (959)
..+.....--.++. ....+.+... +.+.+..+|+|+..+.. .|. ..+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~-~~~~~~~~v~~~~~~~~--~~~---~~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPA-MEDFRLDIVIGKGPSAR--SVR---LDL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHH-HhhhheeeeeccCcccc--cee---ecC---CCeEEEEecCCccccCHHHH
Confidence 33321110000000 1122334444 55556666676654321 111 111 22444556666543333211
Q ss_pred --ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhhhhh
Q 002154 321 --STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILESEIW 398 (959)
Q Consensus 321 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~~~~ 398 (959)
....+.+.+++.++..+++.+.+..... . -..+....|++.|+|.|..+..++..+. .........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCC
Confidence 1346889999999999999988753222 1 1234556899999999977655554331 110000000
Q ss_pred hhh-hccccchHHHHhhhcCCChhhHHHHh-HhhcccCCceechhHHHHHHHHhcccccCCCCcHHHHHHHHHH-HHHHc
Q 002154 399 ELE-AIEKGLLAPLLLSYKELPSKVKRCFS-YCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFN-ILARR 475 (959)
Q Consensus 399 ~~~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~~~~~~~-~L~~~ 475 (959)
... ..-......+...|..++++.+..+. ....++.+ .+..+.+-... | . ....++..++ .|+++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g-------~-~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G-------E-DADTIEDVYEPYLLQI 283 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C-------C-CcchHHHhhhHHHHHc
Confidence 000 00011222256678889988777666 55666533 34433332221 1 1 1234566677 69999
Q ss_pred cCcccc
Q 002154 476 SFFQDF 481 (959)
Q Consensus 476 ~ll~~~ 481 (959)
+|+...
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999743
No 31
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=1.9e-09 Score=105.58 Aligned_cols=144 Identities=20% Similarity=0.292 Sum_probs=90.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHH---HHHHHHHHHhCCCCCcccccHHHHHHHH
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRN----FQKRIWVCVSEPFDEF---RIARAIIEALKPGSAKELVEFQSLMQHI 265 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~l 265 (959)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+..+.. ... ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~---~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLP-ESI---APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhc-cch---hhhHH---HH
Confidence 57999999999999999999875333222 4456677766544332 33334433332 111 11111 22
Q ss_pred HHHHhcCcEEEEEeccCCCCCcC-------CchhHh-hhcCC-CCCCCEEEEeccchhH---HHhhcccceEecCCCChh
Q 002154 266 QEYVVEGEKFLLVLDDVWNEDYG-------KWEPFY-NCLKS-SPHGSKLLITTRKETV---ALIMGSTQVISVNELSEM 333 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~ 333 (959)
.....+.++++||+|++++-... .+..+. ..+.. ..++.++|||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 22224578999999998653221 122323 33333 3568999999998665 333444568999999999
Q ss_pred hhHHHHHHhh
Q 002154 334 ECWSVFESLA 343 (959)
Q Consensus 334 ~~~~lf~~~~ 343 (959)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=1.6e-07 Score=107.85 Aligned_cols=306 Identities=11% Similarity=0.075 Sum_probs=164.4
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc---ccccc--eeEEEEeCCCCCHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV---KRNFQ--KRIWVCVSEPFDEF 237 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~ 237 (959)
.|..+.||++|+++|...|...-. +.....++.|+|++|.|||++++.|.+.... ..... .+++|++....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 345789999999999998865432 1233467889999999999999999874211 11111 25678877777888
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCCcCCchhHhhhcCC-CCCCCEEEE--eccc
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNEDYGKWEPFYNCLKS-SPHGSKLLI--TTRK 312 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~ 312 (959)
.++..|..++.................+...+.+ +...+||||++..-....-+.+...+.+ ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 9999999998533333333333344444443112 2346999999954321111223333332 223555544 3332
Q ss_pred hh--------HHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCC
Q 002154 313 ET--------VALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKN 384 (959)
Q Consensus 313 ~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~ 384 (959)
.. +...++ ...+...|.+.++-.+++..++........+..++-+|+.++..-|-.-.|+.++-.+...+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 11 111111 234677999999999999998864322233444555555555444446667766655553321
Q ss_pred ----CHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhcccC---CceechhHHHHHH--HHhccccc
Q 002154 385 ----TEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLK---DYEIRKHKLIELW--MAQGYLSE 455 (959)
Q Consensus 385 ----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~---~~~i~~~~Li~~W--~a~g~i~~ 455 (959)
+.++-..+.+.. ....+.-....||.+.|-.+..+...-+ ...++...+.... +++..-..
T Consensus 991 gskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 122222222111 0111333446788887765543333222 1134444443332 22200000
Q ss_pred CCC-CcHHHHHHHHHHHHHHccCcccc
Q 002154 456 KGA-KEMEDIGEEYFNILARRSFFQDF 481 (959)
Q Consensus 456 ~~~-~~~e~~~~~~~~~L~~~~ll~~~ 481 (959)
.+. ...+ ....|+.+|...|+|...
T Consensus 1061 iGv~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1061 IGMCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred cCCCCcHH-HHHHHHHHHHhcCeEEec
Confidence 011 1112 566677777777777643
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=122.20 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=186.3
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeE---EEEeCCCC---CHHHHH
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRI---WVCVSEPF---DEFRIA 240 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~v~~~~---~~~~~~ 240 (959)
++||+.+++.|.+.+.... .+...++.+.|..|||||+|++.|..- +.+.+...+ +-...... ...+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7899999999999987653 345679999999999999999999873 333321111 11111111 123344
Q ss_pred HHHHHHhCCCC---------------------------------C-----cc--cccHH-----HHHHHHHHHHhcCcEE
Q 002154 241 RAIIEALKPGS---------------------------------A-----KE--LVEFQ-----SLMQHIQEYVVEGEKF 275 (959)
Q Consensus 241 ~~i~~~l~~~~---------------------------------~-----~~--~~~~~-----~~~~~l~~~~l~~k~~ 275 (959)
++++.++.... . .+ ..... .....+.....+.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 44444441000 0 00 00001 1223333332456799
Q ss_pred EEEeccCCCCCcCCchhHhhhcCCCCC----CCEE--EEeccch--hHHHhhcccceEecCCCChhhhHHHHHHhhccCC
Q 002154 276 LLVLDDVWNEDYGKWEPFYNCLKSSPH----GSKL--LITTRKE--TVALIMGSTQVISVNELSEMECWSVFESLAFFGK 347 (959)
Q Consensus 276 LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~i--ivTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 347 (959)
++|+||+.+.|....+-+...+..... ...| +.|.+.. .+.........+.|.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 999999976665555554443332220 1122 2333332 222222345789999999999999998876321
Q ss_pred CCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCC------CHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChh
Q 002154 348 SMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKN------TEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSK 421 (959)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~------~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 421 (959)
.....+....|+++..|+|+.+..+-..+..+. +...|+.-..+ .......+. +...+..-.+.||..
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~-vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDA-VVEFLAARLQKLPGT 309 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHH-HHHHHHHHHhcCCHH
Confidence 223345566899999999999999999888752 33444322111 111111122 455688889999999
Q ss_pred hHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHccCcccccC---CCCCccc-EEEEChH
Q 002154 422 VKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILARRSFFQDFDK---GYDGEIS-TYKMHDI 497 (959)
Q Consensus 422 ~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~---~~~~~~~-~~~mHdl 497 (959)
.|..+...|++-.. |+.+.|-..|-. ...+.+....+.|....++-..+. ....... +-..||.
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 99999999999644 445555555421 334566666666666555543211 1111111 2368999
Q ss_pred HHHHHHHHhc
Q 002154 498 VHDFAQYLCR 507 (959)
Q Consensus 498 v~~~~~~~~~ 507 (959)
|++.|.....
T Consensus 378 vqqaaY~~i~ 387 (849)
T COG3899 378 VQQAAYNLIP 387 (849)
T ss_pred HHHHHhccCc
Confidence 9988865543
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=7.9e-11 Score=129.28 Aligned_cols=93 Identities=24% Similarity=0.229 Sum_probs=52.0
Q ss_pred hHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc-------ccchhhccCCCCcEEecCCCc
Q 002154 578 PQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE-------RLPEALCELYNLERLNVSGCS 650 (959)
Q Consensus 578 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~-------~lp~~i~~L~~L~~L~l~~~~ 650 (959)
...+..+..|++|+++++.+- ......++..+...+.|++|+++++. +. .++..+.++++|+.|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~--~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLG--EEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCc--HHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 344556666777787772110 00123355556666677777777665 33 233455566677777777666
Q ss_pred CCcccchhhhcccc---CCeeecCCc
Q 002154 651 HLRELPRGIGKLRK---LMYLYNAGT 673 (959)
Q Consensus 651 ~l~~lp~~i~~L~~---L~~L~l~~~ 673 (959)
.....+..+..+.+ |++|++++|
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCC
Confidence 33334444444444 666666665
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=1.6e-09 Score=118.93 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCCccEEEecCCcchhh-hhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc-ccc
Q 002154 555 KGLRGLRSLLVESDEYSWF-SEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE-RLP 632 (959)
Q Consensus 555 ~~~~~LrsL~~~~~~~~~~-~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~-~lp 632 (959)
..+.+|+.|.+.++..... ...++..+...+.|+.|+++++....-...+..++..+..+.+|++|++++|. +. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHH
Confidence 3667789999988764211 11245557778889999998832210001123345667788899999999988 54 455
Q ss_pred hhhccCCC---CcEEecCCCcCCc-----ccchhhhcc-ccCCeeecCCcc
Q 002154 633 EALCELYN---LERLNVSGCSHLR-----ELPRGIGKL-RKLMYLYNAGTD 674 (959)
Q Consensus 633 ~~i~~L~~---L~~L~l~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~ 674 (959)
..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 55655555 9999999886 43 233455666 888999988883
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=2.5e-10 Score=118.61 Aligned_cols=309 Identities=18% Similarity=0.204 Sum_probs=172.0
Q ss_pred CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc--cchhhccCCCCcEEecCCCcCCcccc--hhhh
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER--LPEALCELYNLERLNVSGCSHLRELP--RGIG 660 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~ 660 (959)
..||.|.+.|+.. .....+-..-.++++++.|++.+|.+++. +-..-..+++|++|++..|..++..- ....
T Consensus 138 g~lk~LSlrG~r~----v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRA----VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccc----CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 4678888888321 12233333455778888888888875552 12222467888888888887665432 1234
Q ss_pred ccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccC
Q 002154 661 KLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEK 740 (959)
Q Consensus 661 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 740 (959)
..++|.+|+++.|+.+.. .++. .+ ....++++.+...+|..... +++...-..
T Consensus 214 gC~kL~~lNlSwc~qi~~--~gv~------~~-----------------~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~ 266 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISG--NGVQ------AL-----------------QRGCKELEKLSLKGCLELEL--EALLKAAAY 266 (483)
T ss_pred hhhhHHHhhhccCchhhc--Ccch------HH-----------------hccchhhhhhhhcccccccH--HHHHHHhcc
Confidence 567888888888865543 1111 10 00111122222222222111 111111112
Q ss_pred CCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcCh-h-hcccccceeeecC
Q 002154 741 KKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINW-I-MSLTNLRDLSLNW 818 (959)
Q Consensus 741 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~-~-~~l~~L~~L~L~~ 818 (959)
+..+..+++..+.. ..+..+...-.....|+.|..+++..... . +-| + .+.++|+.|.+..
T Consensus 267 ~~~i~~lnl~~c~~---------------lTD~~~~~i~~~c~~lq~l~~s~~t~~~d-~-~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQ---------------LTDEDLWLIACGCHALQVLCYSSCTDITD-E-VLWALGQHCHNLQVLELSG 329 (483)
T ss_pred ChHhhccchhhhcc---------------ccchHHHHHhhhhhHhhhhcccCCCCCch-H-HHHHHhcCCCceEEEeccc
Confidence 22233344333320 01122333334455677777777765431 1 111 2 2678888888888
Q ss_pred ccCCCcC--CCCC-CcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccc
Q 002154 819 WRNCEHL--PPLG-KLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEII 895 (959)
Q Consensus 819 ~~~~~~l--~~l~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~ 895 (959)
|..+.+. ..++ +.+.|+.+++.+|..+..- ++.... ..+|.|+.|.++.|...++--... ......
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--------~~C~~lr~lslshce~itD~gi~~-l~~~~c 398 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--------RNCPRLRVLSLSHCELITDEGIRH-LSSSSC 398 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--------cCCchhccCChhhhhhhhhhhhhh-hhhccc
Confidence 8766543 3443 5778888888776643322 222211 278999999999887766541100 001245
Q ss_pred cCcccceeeeecCCCCcC-CCcCCCCCCCcceEEEccCcchHHhhccCCCCCCcccCCCCcccc
Q 002154 896 IMARLSSLSIVYCPKLKA-LPDHLLQKSTLQGFGIYHCPILEERYREKTGEDWPKIRHIPRIEI 958 (959)
Q Consensus 896 ~~~~L~~L~i~~C~~L~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~hi~~i~~ 958 (959)
++..|+.|++.+||.+.+ .-..+..+++|+.+++.+|...++.-.+ +..+|.|++.|
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v 456 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKV 456 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCcccee
Confidence 678899999999998764 3356777899999999999887643211 14567777654
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.78 E-value=1.9e-07 Score=97.70 Aligned_cols=173 Identities=20% Similarity=0.226 Sum_probs=104.8
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
..+++|-...+.+.++ .+.+.-...||++|+||||||+.+... ....| ..++...+-.+=++++
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 3445555554444443 346677889999999999999999983 44444 3333332222222222
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEE--eccchhHH---Hh
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLI--TTRKETVA---LI 318 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~ 318 (959)
.+.-++....|++.+|++|.|..-+..+-+.+ ||...+|.-|+| ||.+.... ..
T Consensus 93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 22222222558999999999977654444444 455566776766 56554221 22
Q ss_pred hcccceEecCCCChhhhHHHHHHhhccCCCCCC--Cc-hHHHHHHHHHHhcCCchhHH
Q 002154 319 MGSTQVISVNELSEMECWSVFESLAFFGKSMQE--RE-NLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 319 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~c~G~Plai 373 (959)
.....++.+++|+.++-.+++.+.+........ .. --+++...|++.++|--.++
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 344679999999999999999884432221111 11 12345557889999976544
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-09 Score=112.27 Aligned_cols=252 Identities=21% Similarity=0.203 Sum_probs=163.5
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.....|.+..+.+..+|... |+.+++||.|+++.|. +..+-|..|.+++.|-.|-+-+ ++.|+.+|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~a---F~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~l~k~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA---FKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITDLPKG 134 (498)
T ss_pred CcceEEEeccCCcccCChhh---ccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhhhhhh
Confidence 66677888888887777654 4689999999999987 6666788899999888877765 3779999874
Q ss_pred -ccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccc----------
Q 002154 611 -IEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLR---------- 677 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~---------- 677 (959)
+++|..|+-|.+.-|. +..++ ..+..|++|..|.+..|. +..++. .+..+..++++++..++.+.
T Consensus 135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 8899999999999888 77655 478899999999999876 888876 68889999999887664210
Q ss_pred --cCCccCcCCCCCCccCceeecC----------------------c-cCCCCCccccccCCCCCCceEeCCCCCCChhh
Q 002154 678 --YLPAGIDELIRLRSVRKFVVGG----------------------G-YDRACSLGSLKKLNLLRQCSIDGLGGVSDAGE 732 (959)
Q Consensus 678 --~~p~~i~~L~~L~~L~~~~~~~----------------------~-~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~ 732 (959)
..|..++......-..++.... . .+..+....++.|++|+++++.+. .+..
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN----~i~~ 288 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN----KITR 288 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC----ccch
Confidence 1111111111111000000000 0 001122233555666666665541 2223
Q ss_pred hHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHh-hhCCCCCCCceEEEeeeCCCCCCCCcChhhccccc
Q 002154 733 ARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLL-EALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNL 811 (959)
Q Consensus 733 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L 811 (959)
.....+.+..++++|.|..+. .+.+- ..+.....|+.|+|.+|.++. +.|..|..+..|
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~------------------l~~v~~~~f~~ls~L~tL~L~~N~it~--~~~~aF~~~~~l 348 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNK------------------LEFVSSGMFQGLSGLKTLSLYDNQITT--VAPGAFQTLFSL 348 (498)
T ss_pred hhhhhhcchhhhhhhhcCcch------------------HHHHHHHhhhccccceeeeecCCeeEE--Eeccccccccee
Confidence 333445555566666665544 11121 234456688889999988877 557777788888
Q ss_pred ceeeecCcc
Q 002154 812 RDLSLNWWR 820 (959)
Q Consensus 812 ~~L~L~~~~ 820 (959)
..|.|-.|.
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 888887664
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=2.8e-07 Score=103.70 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=107.1
Q ss_pred cccccchhHHHH---HHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNE---LVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
.+++|++..+.. +..++.. .....+.++|++|+||||||+.+++. ....| +.++.......-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 368888877655 7777643 24557888999999999999999884 32232 33322211111122
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEE--eccchh--HH-
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLI--TTRKET--VA- 316 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~- 316 (959)
.++ +........+++.+|++|+++.......+.+...+.. |..+++ ||.+.. +.
T Consensus 79 ~ii------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVI------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHH------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 222 2222221346788999999987655555556555543 444444 333322 11
Q ss_pred HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHH
Q 002154 317 LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASL 379 (959)
Q Consensus 317 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 379 (959)
........+.+.+++.++.+.++.+.+....... ..-..+....|++.|+|.+..+..+...
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1123346899999999999999988653211100 1222455668999999999866554443
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=2.8e-07 Score=94.66 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=95.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
.+.+.|+|+.|+|||+||+.+++. .......+.|+++.... ... . .+.+. ++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~------------------~----~~~~~-~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS------------------P----AVLEN-LE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh------------------H----HHHhh-cc
Confidence 457899999999999999999985 32223345677653210 000 0 11111 21
Q ss_pred CcEEEEEeccCCCCC-cCCchh-HhhhcCCC-CCCCEEEE-eccc---------hhHHHhhcccceEecCCCChhhhHHH
Q 002154 272 GEKFLLVLDDVWNED-YGKWEP-FYNCLKSS-PHGSKLLI-TTRK---------ETVALIMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 338 (959)
+.-+||+||+|... ...|+. +...+... ..|..+|| |++. ..+...+.....++++++++++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 23489999998642 234553 33333322 23555654 4443 34555555667899999999999999
Q ss_pred HHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 339 FESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
+.+.+....- .--.++..-|++++.|..-++..+-..+
T Consensus 170 L~~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9998864321 1224555678999988777665554444
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=1.9e-09 Score=116.28 Aligned_cols=172 Identities=27% Similarity=0.312 Sum_probs=130.6
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccC
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCEL 638 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L 638 (959)
.-...+++.+. +.. +|.-++.|..|..|.|.. +.+..+|..++++..|.||+|+.|. +..+|..++.|
T Consensus 76 dt~~aDlsrNR---~~e-lp~~~~~f~~Le~liLy~-------n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l 143 (722)
T KOG0532|consen 76 DTVFADLSRNR---FSE-LPEEACAFVSLESLILYH-------NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL 143 (722)
T ss_pred chhhhhccccc---ccc-CchHHHHHHHHHHHHHHh-------ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC
Confidence 33344555555 233 455577778888888887 7788889999999999999999998 88999988888
Q ss_pred CCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCC
Q 002154 639 YNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQ 718 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~ 718 (959)
+ |+.|-+++|+ ++.+|..++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+... ..+.+|..|+ |..
T Consensus 144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~----~lp~El~~Lp-Li~ 215 (722)
T KOG0532|consen 144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE----DLPEELCSLP-LIR 215 (722)
T ss_pred c-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh----hCCHHHhCCc-eee
Confidence 7 8999888876 8999999998889999998887 67788888888888888877655443 3566666666 566
Q ss_pred ceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCC
Q 002154 719 CSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSR 755 (959)
Q Consensus 719 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 755 (959)
|++++. ++ ...+..+.+|++|+.|.|.++.+.
T Consensus 216 lDfScN-ki----s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 216 LDFSCN-KI----SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecccC-ce----eecchhhhhhhhheeeeeccCCCC
Confidence 666642 22 345667888899999999888743
No 42
>PTZ00202 tuzin; Provisional
Probab=98.59 E-value=7.2e-06 Score=87.75 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=106.6
Q ss_pred CcccCCccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 158 SISSIDESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 158 ~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
+..+.+.+.|+||++++.++...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 34455677999999999999999865432 2456999999999999999999997422 1 12233333 679
Q ss_pred HHHHHHHHHhCCCCCcc-cccHHHHHHHHHHHHhc-CcEEEEEeccCCCCCcCCchhHh---hhcCCCCCCCEEEEeccc
Q 002154 238 RIARAIIEALKPGSAKE-LVEFQSLMQHIQEYVVE-GEKFLLVLDDVWNEDYGKWEPFY---NCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~~l~-~k~~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~ 312 (959)
++++.++.+|+...... ..-.+.+.+.+.+.... |++.+||+-=-.- .....+. ..|.....-|.|++----
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehH
Confidence 99999999998422211 12234444555443233 6777777753211 1122221 234444556777764433
Q ss_pred hhHHHh---hcccceEecCCCChhhhHHHHHHhh
Q 002154 313 ETVALI---MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 313 ~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
+..... ...-..|.+++++.++|.++-.+..
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 222111 1123478899999999998877653
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.6e-06 Score=94.01 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=118.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC----cccccccceeEEEEe-CCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN----DSVKRNFQKRIWVCV-SEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-~~~~~~~~~ 239 (959)
.+++|-+..++.+.+++... .-.....++|+.|+||||+|+.+++. .....|+|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789888899999998543 24567889999999999999888762 123456676556542 22222222
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHH-H-
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVA-L- 317 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~- 317 (959)
++++.+.+. .....+++-++|+|++...+..++..+...+.....++.+|++|.+.... .
T Consensus 78 ir~~~~~~~------------------~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 78 IRNIIEEVN------------------KKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHHHHHHh------------------cCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 233333322 11133566677778887667778999999999888899999888654322 1
Q ss_pred hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHH
Q 002154 318 IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKT 375 (959)
Q Consensus 318 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 375 (959)
.......+.+.++++++....+.+...+ . . .+.+..++..++|.|.-+..
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~~----~-~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYND----I-K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhcC----C-C---HHHHHHHHHHcCCCHHHHHH
Confidence 1223568999999999998887654311 1 1 22355788999999875543
No 44
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.9e-06 Score=95.11 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=112.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+.+...-..... ..++..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999999888542 2356789999999999999999987421000000 00000000111111
Q ss_pred HHhCC-------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH
Q 002154 245 EALKP-------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA 316 (959)
Q Consensus 245 ~~l~~-------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 316 (959)
..... .......+...+.+.+......+++-++|+|++...+...+..+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 11000 0000111111222221111123456699999997766556777877777666677777776543 332
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
.. .+....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.|..+...
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2235689999999999998888765432211 12344557899999988644333
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=2.5e-08 Score=95.84 Aligned_cols=127 Identities=26% Similarity=0.270 Sum_probs=41.3
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhc-cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFD-KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
+..++|.|.+.++....+.. +. .+.+|++|+|++ +.+..+. .+..+++|+.|++++|. ++++++.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~-------N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSN-------NQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-TT-------S--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECCC-------CCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 44556777777776433222 33 456777777777 5566663 36667777777777777 7777654
Q ss_pred h-ccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCccccccCCc----cCcCCCCCCccCceeec
Q 002154 635 L-CELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGTDSLRYLPA----GIDELIRLRSVRKFVVG 698 (959)
Q Consensus 635 i-~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 698 (959)
+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|+- ...+. -+..+++|+.|+...+.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 4 357777777777765 54442 2355677777777777642 22221 14455666666555443
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=9e-08 Score=92.07 Aligned_cols=107 Identities=27% Similarity=0.329 Sum_probs=34.5
Q ss_pred ccCCcccEEEccccCcccccccccccccccc-ccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhh
Q 002154 582 DKLTCLRALKLEVRQPWWCQNFIKDIPENIE-KLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIG 660 (959)
Q Consensus 582 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 660 (959)
.+...+|.|+|.+ +.+..+ +.++ .+.+|+.|+|++|. ++.++. +..+++|++|++++|. ++.++..+.
T Consensus 16 ~n~~~~~~L~L~~-------n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRG-------NQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccc-------cccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchH
Confidence 3445678888887 556655 3455 46788888888887 777764 7778888888888776 777765553
Q ss_pred -ccccCCeeecCCccccccCC--ccCcCCCCCCccCceeecCc
Q 002154 661 -KLRKLMYLYNAGTDSLRYLP--AGIDELIRLRSVRKFVVGGG 700 (959)
Q Consensus 661 -~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 700 (959)
.+++|++|++++| .+..+. ..+..+++|+.|++..+...
T Consensus 85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5788888888776 444432 22455666666666555444
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=8.5e-07 Score=91.69 Aligned_cols=171 Identities=21% Similarity=0.191 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP 249 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 249 (959)
.+..++++.+++.. .....|.|+|+.|+|||+||+.+++. ........++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH------
Confidence 34566777776532 24578999999999999999999884 22223344566544321 000
Q ss_pred CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC-Cc-hhHhhhcCC-CCCCCEEEEeccchh---------HHH
Q 002154 250 GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG-KW-EPFYNCLKS-SPHGSKLLITTRKET---------VAL 317 (959)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~ 317 (959)
... ... +++ .-+||+||++.-... .| +.+...+.. ...+.++|+||+... +..
T Consensus 82 ---------~~~----~~~-~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 ---------PEV----LEG-LEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred ---------HHH----Hhh-ccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 001 111 222 238999999754322 22 334444332 123457888887532 111
Q ss_pred hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHH
Q 002154 318 IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASL 379 (959)
Q Consensus 318 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 379 (959)
.+.....+++.++++++...++...+....- .--.+..+.|++.+.|.|..+..+...
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2222457999999999999988775432111 112344457777888888877665443
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.1e-07 Score=104.37 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=117.7
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-+...+.|..++.... -...+.++|+.|+||||+|+.+++...-.+.+...+|.|.+... +..-...-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 368999988888888886432 34667999999999999999987742211222223333321100 000000000
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHHHhh-ccc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVALIM-GST 322 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~ 322 (959)
..+............++...+...-..+++-++|+|+++......+..+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000001111112222222222112356678999999876666777888887766556666665543 3332222 335
Q ss_pred ceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH-HHHHHHh
Q 002154 323 QVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA-KTIASLL 380 (959)
Q Consensus 323 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai-~~~~~~l 380 (959)
..+++.+++.++..+.+.+.+...+... ..+....|++.++|.+--+ ..+-.++
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6899999999999999988764332211 2345568999999988644 4444433
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=1.3e-06 Score=96.51 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=109.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCH--HHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDE--FRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~--~~~~~ 241 (959)
.+++|++..++.+..++... ..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++..+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999999988532 344688999999999999999887421 11122 2234444321100 00000
Q ss_pred --HHHHHhCCCCCcccccHHHHHHHHHHHH----hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-
Q 002154 242 --AIIEALKPGSAKELVEFQSLMQHIQEYV----VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET- 314 (959)
Q Consensus 242 --~i~~~l~~~~~~~~~~~~~~~~~l~~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 314 (959)
.....+...........+.....+.... ..+.+-+||+||+..........+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000000000000001111111111110 123455899999965443334456555555455677888775432
Q ss_pred HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 315 VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
+... ......+.+.+++.++...++.+.+...+.. -..+....+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2111 1234578899999999998888865432221 12345568889999877655433
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=8.4e-07 Score=87.00 Aligned_cols=181 Identities=20% Similarity=0.224 Sum_probs=94.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+|+|.+.-++.+.-++..... ..+...-+.++|++|+||||||+.+.++ ....|. +.+... ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh---------
Confidence 5799999888776555432211 2345778899999999999999999994 444452 222211 00
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC--------CCC-----------CE
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS--------PHG-----------SK 305 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~ 305 (959)
....+...+.. ++ ++-+|++|++..-+...-+.+..++.++ +.+ +-
T Consensus 88 ------------k~~dl~~il~~--l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 ------------KAGDLAAILTN--LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ------------SCHHHHHHHHT-----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------hHHHHHHHHHh--cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 01112222221 22 3346666777654433233333333322 111 12
Q ss_pred EEEeccchhHHHhhcc-cc-eEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 306 LLITTRKETVALIMGS-TQ-VISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 306 iivTtr~~~v~~~~~~-~~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
|=.|||...+...+.. .. ..+++..+.+|-.++..+.+..- .-+--.+.+.+|++++.|-|--+.-+-+.+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3357776554443333 22 45799999999999998766432 223345677899999999998666555444
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=2.5e-07 Score=86.41 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccc-----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRN-----FQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHI 265 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 265 (959)
+.+.+.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...++.+++..... ..+...+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHH
Confidence 4578999999999999999999884 2211 23456999888889999999999999833332 34556666777
Q ss_pred HHHHhcCcEEEEEeccCCCC-CcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 266 QEYVVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
.+.+-+.+..+||+||+..- ..+.++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77634455679999999654 4333444433333 556677776654
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.50 E-value=1.4e-05 Score=91.94 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=139.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.++.++++.+|+..... +...+.+.|+|++|+||||+|+.++++. . |+ .+-++.+...+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHH
Confidence 4799999999999999865331 2236789999999999999999999852 1 22 233444433222 2233333
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhc-CcEEEEEeccCCCCCc----CCchhHhhhcCCCCCCCEEEEeccch-hHHH-
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVE-GEKFLLVLDDVWNEDY----GKWEPFYNCLKSSPHGSKLLITTRKE-TVAL- 317 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~-~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~- 317 (959)
....... . +. .++-+||+|+++.... ..+..+...+.. .+..||+|+.+. ....
T Consensus 86 ~~~~~~~----------------s-l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 86 GEAATSG----------------S-LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHhhccC----------------c-ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchh
Confidence 2221000 0 12 2677999999965432 235556555543 234466666442 1111
Q ss_pred -hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCC-C--CHHHHHHHH
Q 002154 318 -IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSK-N--TEKEWQNIL 393 (959)
Q Consensus 318 -~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~-~--~~~~w~~~l 393 (959)
.-.....+.+.+++.++....+.+.+...+.... .+....|++.++|....+......+... . +.+....+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG 222 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh
Confidence 1123567999999999998888877643322122 3455689999999776654444434332 1 233333222
Q ss_pred hhhhhhhhhccccchHHHHhhhc-CCChhhHHHHhHhhcccCCceechhHHHHHHHHhccccc
Q 002154 394 ESEIWELEAIEKGLLAPLLLSYK-ELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSE 455 (959)
Q Consensus 394 ~~~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~ 455 (959)
. .+...+++.++..-+. .-+......+.. ..++. ..+-.|+.|.+...
T Consensus 223 ~------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 R------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred c------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1 1123445666655443 222233332221 12222 35778999998765
No 53
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.9e-06 Score=88.29 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=130.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-e-eEEEEeCCCCCHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-K-RIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~v~~~~~~~~~~~~ 242 (959)
..+.+|+++++++...|...-. +..+.-+.|+|..|.|||+.++.|.+. ++.... . .++|++....+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3499999999999998865432 223344899999999999999999985 333321 1 689999999999999999
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHh-cCcEEEEEeccCCCCCcCCchhHhhhcCCCCC-CCEEE--EeccchhHHHh
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVV-EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPH-GSKLL--ITTRKETVALI 318 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~ii--vTtr~~~v~~~ 318 (959)
|+.+++ ..+.......+..+.+.+..- .++.+++|||++..-....-+.+...+..... .++|+ ..+.+......
T Consensus 93 i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 93 ILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 999997 434444445555556655511 36899999999965322111344444444332 34443 34444333322
Q ss_pred hcc-------cceEecCCCChhhhHHHHHHhhccCCC-CCCCchHHHHHHHHHHhcCC-chhHHHHHH
Q 002154 319 MGS-------TQVISVNELSEMECWSVFESLAFFGKS-MQERENLEKIGWEIVRKCKG-LPLAAKTIA 377 (959)
Q Consensus 319 ~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~c~G-~Plai~~~~ 377 (959)
+.+ ...+..+|-+.+|-..++..++-.+-. ....+..-+.+..++..-+| .-.|+..+-
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 211 224778999999999999888753321 12233344444444444444 444554443
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.5e-06 Score=97.07 Aligned_cols=196 Identities=16% Similarity=0.222 Sum_probs=115.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+...+.|.+++... .-...+.++|+.|+||||+|+.+.+. +. |.-++.. ..+..-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~--Ln----C~~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKC--LN----CETGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH--hC----CCcCCCC-CCCccCHHHHHHh
Confidence 47999999999999998643 23578899999999999999988763 11 0001110 0111111111111
Q ss_pred HHhCC-------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH
Q 002154 245 EALKP-------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA 316 (959)
Q Consensus 245 ~~l~~-------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 316 (959)
..-.. .......+...+...+......+++-++|+|++...+......+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 0001111122222222211134667799999998766667777888777766677788777653 222
Q ss_pred -HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 317 -LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 317 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
........+++.+++.++..+.+.+.+...+.... .+....|++.++|.+..+..+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22234578999999999999988877643222122 334457999999987654433
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=7.6e-06 Score=94.16 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=116.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|.+++... .-...+.++|..|+||||+|+.+.+...-...+. +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 47999999999999998543 2356678999999999999987776311000000 00111111111111
Q ss_pred HH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH
Q 002154 245 EA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA 316 (959)
Q Consensus 245 ~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 316 (959)
.. +.........+...+++.....-..++.-++|||++...+...|..++..+.......++|+||++. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 0000000111112222222111123456689999998777677888888887766678888877763 222
Q ss_pred -HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHHHh
Q 002154 317 -LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIASLL 380 (959)
Q Consensus 317 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l 380 (959)
........+.+.+++.++..+.+.+.+...+-.. ..+....|++.++|..- |+..+-..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123356899999999999999888664322111 23445589999999664 555544333
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=4.9e-07 Score=105.84 Aligned_cols=197 Identities=14% Similarity=0.207 Sum_probs=116.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++..--...... ..+..-..-..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHh
Confidence 47999999999999988643 23456689999999999999999874211100000 0000000001111
Q ss_pred HH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.. +...........+.+...+......+++-++|||++.....+....++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 000000111222333333332223567789999999887777788888888776666777766554 3333
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.. ......|++.+++.++..+++.+.+-..+ ...-.+....|++.++|.|.-+..+.
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23357899999999999999888653321 11123455589999999886554443
No 57
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=3.7e-07 Score=84.51 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=78.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
.+++.|.|+.|+|||||+++++++.. ....+++++..+........ .+ +.+.+.+. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~-~~~~~~~~-~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PD-LLEYFLEL-IK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hh-hHHHHHHh-hc
Confidence 46899999999999999999997522 33556777766532211000 00 22333333 33
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHHh------hcccceEecCCCChhhh
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVALI------MGSTQVISVNELSEMEC 335 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 335 (959)
.++.+|+||++... ..|......+.+..+..+|++|+.+...... .+....+++.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 47788999999654 4677777776665567899999988655532 12345789999997764
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=3.6e-07 Score=93.82 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCcc-cccHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP--FDEFRIARAI-----IEALKPGSAKE-LVEFQSLM 262 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 262 (959)
.-..++|+|++|+|||||++.++++.... +|+..+|+.+... +++.++++.+ +.++.. .... ........
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHHHH
Confidence 45678999999999999999999975444 8999999997776 7899999998 333321 1100 01111223
Q ss_pred HHHHHHHhcCcEEEEEeccCCC
Q 002154 263 QHIQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 263 ~~l~~~~l~~k~~LlVlDdv~~ 284 (959)
.......-.|++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 3333332458999999999943
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.2e-07 Score=107.29 Aligned_cols=107 Identities=36% Similarity=0.428 Sum_probs=90.0
Q ss_pred hccCCcccEEEccccCccccccccccccccccccC-CccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLL-HLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGI 659 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 659 (959)
+..++.+..|++.+ +.+..+|..++.+. +|++|++++|. +..+|..+..+++|+.|+++.|. +..+|...
T Consensus 112 ~~~~~~l~~L~l~~-------n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDN-------NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhcccceeEEecCC-------cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 45557899999998 78899988888885 99999999998 99998889999999999999987 99999888
Q ss_pred hccccCCeeecCCccccccCCccCcCCCCCCccCceee
Q 002154 660 GKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVV 697 (959)
Q Consensus 660 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 697 (959)
..+++|+.|+++++ .+..+|..+..+..|++|.+...
T Consensus 183 ~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 183 SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 88999999999988 77888876656666777665433
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.3e-07 Score=97.77 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=114.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++..--. +... ...+....+ .+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 468999999999999886432 23568999999999999999998741110 1000 000111111 11121
Q ss_pred HHhCC-------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKP-------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~-------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
..... ....+..+..++.+.+......++.-++|+|++...+.+.+..++..+........+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 11110 011112223333333333223466779999999887777788888777665555555555543 3333
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
.. ......|.+.+++.++..+.+.+.+...+. .--.+....|++.++|.+.-+.
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHH
Confidence 22 233568999999999998888877643221 1123455689999999886443
No 61
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=5.3e-05 Score=89.06 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=106.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEeCCC---CCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF---QKRIWVCVSEP---FDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~ 238 (959)
++++|++..++.+.+.+.. .....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3689999999998887742 234579999999999999999998754332222 12345554321 12222
Q ss_pred HHHHH---------------HHHhCC-------------CC--Cccccc-HHHHHHHHHHHHhcCcEEEEEeccCCCCCc
Q 002154 239 IARAI---------------IEALKP-------------GS--AKELVE-FQSLMQHIQEYVVEGEKFLLVLDDVWNEDY 287 (959)
Q Consensus 239 ~~~~i---------------~~~l~~-------------~~--~~~~~~-~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~ 287 (959)
+...+ +...+. +. -.+... ....+..+.+. ++++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~-Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKV-LEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHH-HhhCeEEeecceeccCCc
Confidence 21111 111110 00 000111 12346677777 888999999888887777
Q ss_pred CCchhHhhhcCCCCCCCEEEE--eccchh-HHHh-hcccceEecCCCChhhhHHHHHHhhc
Q 002154 288 GKWEPFYNCLKSSPHGSKLLI--TTRKET-VALI-MGSTQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 288 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
..|+.+...+..+.+...+++ ||++.. +... ......+.+.+++.+|.+.++.+.+.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 778888877776665555555 555432 1111 12235778999999999999998764
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2.8e-06 Score=96.63 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=113.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|++..++.+.+++... ...+.+.++|+.|+||||+|+.+.+.. . |.-|... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L--~----C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAI--N----CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHh--c----CCCCCCC-CCCcccHHHHHHH
Confidence 47899999999999988543 235678899999999999999987631 1 1112211 1111112222221
Q ss_pred HHhCCC-------CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKPG-------SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~~-------~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
....+. ......+.+.+...+...-..+++-++|+|++...+.+++..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111100 00111112222222222112234457999999776666777788877765556666655543 3332
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHH
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIAS 378 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~ 378 (959)
. .......+++.+++.++....+...+...+... . .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-E---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 223356899999999999988887664322111 1 3345578999999665 4444444
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.3e-06 Score=95.80 Aligned_cols=201 Identities=13% Similarity=0.173 Sum_probs=114.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..--... +..--+ .+..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 479999999999999986432 3567789999999999999888763110000 000000 000011111111111
Q ss_pred HH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.. +.........++.++.+.+...-..++.-++|+|++...+...+..++..+..-..++++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 000001111222223332222213466779999999887777777888777765566666665554 3333
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
.. ......+.+.+++.++..+.+.+.+...+... ..+....|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 23357899999999999998887653222111 1234457899999999755444
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=7.2e-06 Score=89.83 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=106.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe--CCCCCHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV--SEPFDEFRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~ 242 (959)
.+++|+++.++.+.+++... ..+.+.++|+.|+||||+|+.+++... ...+.. .++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHH
Confidence 46899999999999998532 344579999999999999999987421 111211 12222 2211111 1111
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hH-HHhhc
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TV-ALIMG 320 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v-~~~~~ 320 (959)
.+..+....+ . ....+-++++|++..-.......+...+......+++|+++... .+ .....
T Consensus 88 ~i~~~~~~~~---------------~-~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 88 KIKEFARTAP---------------V-GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHhcCC---------------C-CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 1111110000 0 11345689999986544444556666666555567787777432 11 11112
Q ss_pred ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 321 STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 321 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
....+++.+++.++...++.+.+...+... ..+....+++.++|.+.-+
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 245789999999999888888764322211 2345557899999987654
No 65
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=8.6e-07 Score=88.47 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND 216 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 216 (959)
.|+||+++++++.+.+.. . .....+.+.|+|++|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-A--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-T--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-H--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999952 1 34567999999999999999999998853
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9.6e-06 Score=92.46 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=115.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc----cc---------------ccccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS----VK---------------RNFQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~---------------~~F~~~ 225 (959)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++... .. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999988532 2346678999999999999999876210 00 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
+++.......+ .+...+.+.+......+++-++|+|++...+...+..++..+......+.
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 12223333333222346677999999987776777888888887666676
Q ss_pred EEEeccc-hhHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHHHh
Q 002154 306 LLITTRK-ETVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIASLL 380 (959)
Q Consensus 306 iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l 380 (959)
+|++|.+ ..+... ......+++.+++.++....+.+.+...+- ..-.+....|++.++|.+. |+..+-.++
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6655543 333322 233578999999999988887775532221 1123344578999999664 555554433
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=2e-06 Score=82.22 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred ccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 168 FGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 168 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
+|++..++.+...+... ..+.+.|+|++|+|||++|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888532 356889999999999999999998532 212345566655433222111111000
Q ss_pred CCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC------CCCCEEEEeccch
Q 002154 248 KPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS------PHGSKLLITTRKE 313 (959)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~ 313 (959)
......... ...++.+||+||++.........+...+... ..+..||+||...
T Consensus 72 ------------~~~~~~~~~-~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELA-EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhh-ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 000111111 3456789999999753222223333333332 3577888888754
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=3e-06 Score=95.92 Aligned_cols=196 Identities=15% Similarity=0.194 Sum_probs=114.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 243 (959)
.+++|-+..++.|...+... .-...+.++|+.|+||||+|+.+++..--...... ..+..+. .-.....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~----~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE----QCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC----CChHHHHH
Confidence 46899999999888877532 23567899999999999999999774111000000 0000000 00011111
Q ss_pred HHH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEE-eccchhH
Q 002154 244 IEA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLI-TTRKETV 315 (959)
Q Consensus 244 ~~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 315 (959)
... +.........+...+.+.....-..+++-++|+|+++.-+...+..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110 00001111122222332222222346777999999988776778888888877666666665 4444444
Q ss_pred HHhh-cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 316 ALIM-GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
...+ .....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4332 33567999999999999999888753322111 234457999999977544
No 69
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=9.2e-07 Score=93.54 Aligned_cols=293 Identities=21% Similarity=0.216 Sum_probs=178.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
..+-+.++|.|||||||++-.+.. +..-|.. +.+|....-.+...+.-.+...++......... ...+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~----~~~~~~~- 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSA----VDTLVRR- 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHH----HHHHHHH-
Confidence 468899999999999999988887 4556754 556666655566666666666565333332222 3333344
Q ss_pred hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHHhhcccceEecCCCChh-hhHHHHHHhhccCCC
Q 002154 270 VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVALIMGSTQVISVNELSEM-ECWSVFESLAFFGKS 348 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~ 348 (959)
..++|.++|+||..+- .+.-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 5678999999998431 122233444555555566788888864433 33556778888765 688888776643322
Q ss_pred C-CCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhhhhhhhhh-------ccccchHHHHhhhcCCCh
Q 002154 349 M-QERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILESEIWELEA-------IEKGLLAPLLLSYKELPS 420 (959)
Q Consensus 349 ~-~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~~~~~l~~sy~~L~~ 420 (959)
. .....-...+.+|.++.+|.|++|...++...+-. ..+-..-++.....+.+ -.....+.+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1 12233455667899999999999999999887652 33333333322222221 124577889999999999
Q ss_pred hhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHH
Q 002154 421 KVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHD 500 (959)
Q Consensus 421 ~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~ 500 (959)
..+-.|.-++.|...|... ...|.+-|-.... ..-....-+..+++.+++...... +. ..|+.-+-++.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~ 308 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRR 308 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHH
Confidence 9999999999998776654 3345554422100 111222234566677766543221 11 13455555666
Q ss_pred HHHHHhc
Q 002154 501 FAQYLCR 507 (959)
Q Consensus 501 ~~~~~~~ 507 (959)
|+..+..
T Consensus 309 YalaeL~ 315 (414)
T COG3903 309 YALAELH 315 (414)
T ss_pred HHHHHHH
Confidence 6655543
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=7.7e-06 Score=88.84 Aligned_cols=200 Identities=16% Similarity=0.192 Sum_probs=117.4
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEeCCCCCHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK--RNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
-..++|-++..+.+...+... .....+.|+|+.|+||||+|..+.+..--. ..+... ....++......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 357899999999999998643 245679999999999999998887631100 001110 0111111112333
Q ss_pred HHHHHhCCC---------CC----cccccHHHH---HHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 242 AIIEALKPG---------SA----KELVEFQSL---MQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 242 ~i~~~l~~~---------~~----~~~~~~~~~---~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
.+...-.++ .. ......+++ .+.+......+++-++|+|++...+......+...+.....+..
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 332221100 00 111223333 22332221346777999999988777777778888876555565
Q ss_pred EEEeccch-hHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 306 LLITTRKE-TVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 306 iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+|++|... .+... ......+++.+++.++..+++.+... .. . ...+....|++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~--~~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS--SQ-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc--cc-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555432 22221 22356899999999999999987431 11 1 112345589999999998665443
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=8.3e-06 Score=83.79 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
....-+.+||++|+||||||+.+....+... ..||..|....-.+-.++|+++-. + ...
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~---~~~ 218 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------N---EKS 218 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------H---HHh
Confidence 4677788999999999999999998643332 457777765555555566655543 0 011
Q ss_pred hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEE--eccchhHH---HhhcccceEecCCCChhhhHHHHHHhhc
Q 002154 270 VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLI--TTRKETVA---LIMGSTQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
+.++|.+|++|+|..-+..+-+. .||...+|.-++| ||.+.... ..+....++.|++|+.++...++.+...
T Consensus 219 l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 56789999999997654333332 3666677876665 66664322 2234567899999999999998887432
Q ss_pred --cC-CC---CCCC---chHHHHHHHHHHhcCCchh
Q 002154 345 --FG-KS---MQER---ENLEKIGWEIVRKCKGLPL 371 (959)
Q Consensus 345 --~~-~~---~~~~---~~~~~~~~~i~~~c~G~Pl 371 (959)
++ .. .... .--..+..-++..|.|-..
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 11 1111 1234456667778888664
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.2e-05 Score=90.28 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=112.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc------cc-------------cccccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND------SV-------------KRNFQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~~-------------~~~F~~~ 225 (959)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+...- .. .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 47899999888888887533 234578999999999999998886510 00 0011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
+.++.+....+.+ .+++ .+.....-..+++-++|+|++...+......+...+......++
T Consensus 88 ~eidaas~~~vdd-IR~I------------------ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVI------------------LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEecccCCCHHH-HHHH------------------HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 3333322222221 1222 22222111345667899999976666667778888877666777
Q ss_pred EEEeccc-hhHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 306 LLITTRK-ETVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 306 iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
+|++|.. ..+... ......+++.+++.++..+.+.+.+...+.... .+....|++.++|.+..+.
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7766643 333322 234678999999999999998887643322122 3344579999999876443
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=7.7e-06 Score=88.86 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 243 (959)
.+++|.++.++.|.+++.. ++.+.+.++|++|+||||+|+.+++.. ....|.. ++-++.++..+.. .++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 4688998888888887743 234457799999999999999988741 1112221 1122222222211 22222
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHHH-hhcc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVAL-IMGS 321 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~ 321 (959)
+..+..... ....++.-++|+|++...+......+...+......+++|+++... .+.. ....
T Consensus 85 i~~~~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 85 IKMFAQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222110000 0012456799999997766555555666665545567777777542 2211 1122
Q ss_pred cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 322 TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
...+++.++++++....+...+...+-... .+....|++.++|..-.+.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 457999999999999888877643222112 3445688999998765443
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=5.3e-06 Score=98.12 Aligned_cols=175 Identities=16% Similarity=0.200 Sum_probs=97.6
Q ss_pred cccccchhHHH---HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKN---ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
.+|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 46889888764 45555532 24566789999999999999999984 334441 111110 0000
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHH-HhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEe--ccchh--HH
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEY-VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLIT--TRKET--VA 316 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~ 316 (959)
+........... ...+++.+|||||++.-....++.+...+. .|+.++++ |.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 011111111111 012467899999997655445555554443 35555553 33321 21
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCC---CCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGK---SMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
.. ......+.+++++.++...++.+.+.... ......-..+....|++.+.|..-.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 11 22245799999999999999987653100 00111122345567888888865433
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.30 E-value=1.4e-05 Score=82.31 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=88.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.|+|..|+|||+|++.+++. .......+.|+++.+ ....+. ..+.. +
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~~--l- 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALEA--L- 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHHH--H-
Confidence 356999999999999999999884 333333455666422 111110 11111 1
Q ss_pred CcEEEEEeccCCCCC-cCCchh-HhhhcCC-CCCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHHHH
Q 002154 272 GEKFLLVLDDVWNED-YGKWEP-FYNCLKS-SPHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 339 (959)
.+.-+||+||+.... ...|.. +...+.. ...|..||+||+.. .....+.....+++++++.++-.+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 233589999995422 123432 3322222 13466799999852 22222334568999999999999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 340 ESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
.+++...+- .--.+...-|++.++|..-.+
T Consensus 172 ~~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 987653221 122345557888888766555
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=7e-06 Score=94.44 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=110.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+..--..... + ..+..-...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 47999999999999998643 2356789999999999999998876311000000 0 0000000001110
Q ss_pred HH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH
Q 002154 245 EA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA 316 (959)
Q Consensus 245 ~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 316 (959)
.. +..........+..+.......-..+++-++|+|++...+......++..+......+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 0000000111122222221111123566789999997655545666777776555566777776542 222
Q ss_pred -HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 317 -LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 317 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
...+....+.+.+++.++....+.+.+-..+... -.+....|++.++|.+.-+..+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 1123345788899999999999887764332211 2344558999999988644433
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.28 E-value=1.4e-05 Score=88.90 Aligned_cols=184 Identities=12% Similarity=0.132 Sum_probs=110.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc--cc------------------cccce
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS--VK------------------RNFQK 224 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~------------------~~F~~ 224 (959)
.+++|.++.++.+.+++... .-...+.++|+.|+||||+|+.+.+... .. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988532 2356788999999999999988865311 00 12221
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCC
Q 002154 225 RIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGS 304 (959)
Q Consensus 225 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 304 (959)
+++........ +.+++ +.+.+...-..+++-++|+|++..........+...+......+
T Consensus 89 -~~~~~~~~~~~-~~~~~------------------l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 -IEIDAASNNGV-DDIRE------------------ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred -EEeeccccCCH-HHHHH------------------HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 22222111111 11122 22222211123455688999986554455667777776555667
Q ss_pred EEEEeccchh-HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 305 KLLITTRKET-VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 305 ~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.+|++|.+.. +... ......+++.++++++..+++...+...+... -.+.+..+++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 7777765433 2222 22346788999999999888887664322111 13556678999999987665444
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=8.3e-06 Score=94.39 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=116.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+.+.. .... .+ ...++..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L--~c~~----~~-~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGL--NCET----GI-TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhh--hhcc----CC-CCCCCCCCHHHHHHH
Confidence 47999999999999888532 234567899999999999999997731 1100 00 001111112222221
Q ss_pred HH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.. +.........+...+.+.+...-..+++-++|+|++...+......++..+..-....++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 11 000000111222333333322223567779999999887777778888877776666666665554 3333
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
. .......+.+.+++.++....+.+.+...+... -.+....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223357899999999999998887653221111 13344579999999887554443
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.3e-06 Score=96.53 Aligned_cols=202 Identities=18% Similarity=0.169 Sum_probs=114.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------ccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN-------------------FQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 225 (959)
.+++|.+...+.|...+... .-...+.++|++|+||||+|+.+.+...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46999988888888777532 23466889999999999999999774111000 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
..++.+...... ....+.+........+++-++|+|++..-.....+.+...+........
T Consensus 89 ~el~aa~~~gid-------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGID-------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHH-------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 112221111111 1111222221111235677999999966544455667766665444455
Q ss_pred EEEeccc-hhHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHHHHHhcC
Q 002154 306 LLITTRK-ETVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTIASLLLS 382 (959)
Q Consensus 306 iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~~l~~ 382 (959)
+|++|.+ ..+... ......+++.+++.++....+.+.+...+-.. ..+....|++.++| .+.|+..+-.+...
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWKF 225 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5544443 333332 23356899999999999888888764322111 13445578887865 56777777654432
Q ss_pred C---CCHHHHHHHHh
Q 002154 383 K---NTEKEWQNILE 394 (959)
Q Consensus 383 ~---~~~~~w~~~l~ 394 (959)
. -+.+....++.
T Consensus 226 ~~~~It~e~V~~~l~ 240 (472)
T PRK14962 226 SEGKITLETVHEALG 240 (472)
T ss_pred cCCCCCHHHHHHHHc
Confidence 1 24555555443
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.27 E-value=1.6e-05 Score=79.22 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=65.5
Q ss_pred cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHHHh-hcccceEecCCCChhhhHHHHHHhhccCCC
Q 002154 271 EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVALI-MGSTQVISVNELSEMECWSVFESLAFFGKS 348 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (959)
.+.+-++|+||+...+...++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 3567789999997766666777888887766677777777653 22221 223568999999999998888776 1
Q ss_pred CCCCchHHHHHHHHHHhcCCchhH
Q 002154 349 MQERENLEKIGWEIVRKCKGLPLA 372 (959)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~G~Pla 372 (959)
.. .+.+..|++.++|.|..
T Consensus 169 -i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC----HHHHHHHHHHcCCCccc
Confidence 11 34566899999998863
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.1e-05 Score=88.15 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=114.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc--ccc-eeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR--NFQ-KRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~-~~~wv~v~~~~~~~~~~~ 241 (959)
.+++|.++..+.|.+.+... .-...+.++|+.|+||+|+|..+.+..--.. ... +..=.........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 57999999999999988643 2356789999999999999976655210000 000 000000000000001111
Q ss_pred HHHHHhCCC---------CC----cccccHHHHHH---HHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 242 AIIEALKPG---------SA----KELVEFQSLMQ---HIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 242 ~i~~~l~~~---------~~----~~~~~~~~~~~---~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
.+...--++ .. .....++++.. .+......+.+.++|+||+...+......+...+..-..++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111000 00 01122333222 221111235677999999988877777888888877666777
Q ss_pred EEEeccchh-HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 306 LLITTRKET-VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 306 iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+|++|.+.. +... ......+.+.+++.++..+++.+... .... +....+++.++|.|..+..+.
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-----~~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-----DLPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-----cCCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 777776643 3222 23356899999999999999987531 1111 112478999999998665543
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.4e-05 Score=92.26 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=112.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccc--cceeEEEEeCCCCCHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN--FQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.+++|-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+..--... ..... ...+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 46899888888999988643 23567799999999999999888542100000 00000 001111111222
Q ss_pred HHHH-------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hh
Q 002154 243 IIEA-------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ET 314 (959)
Q Consensus 243 i~~~-------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 314 (959)
|... +.........+..++.+.+...-..++.-++|||++...+...+..++..+......+++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 2110 000000111112222222211112355668999999887777777788777766666667666543 33
Q ss_pred HH-HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 315 VA-LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 315 v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
+. ........+++.+++.++..+.+.+.+...+-... .+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 32 22334578999999999999888876643222111 344557899999977655443
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-05 Score=89.51 Aligned_cols=201 Identities=16% Similarity=0.177 Sum_probs=112.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-eCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC-VSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 243 (959)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+.-.-...+....|.. +..++..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 47899998888888888532 2345688999999999999988876311111010011110 01111111112222
Q ss_pred HHHhCCC-------CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chhH
Q 002154 244 IEALKPG-------SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KETV 315 (959)
Q Consensus 244 ~~~l~~~-------~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 315 (959)
......+ .......+.++.+.+...-..+++-++|+|++...+...+..+...+......+.+|++|. ...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1111000 0011112222222222111335667889999976665678888888877666777766553 3333
Q ss_pred HHhh-cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 316 ALIM-GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
...+ .....+++.++++++....+...+...+. .-..+.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3221 22457899999999998888876532221 1223455689999999775443
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1e-05 Score=92.38 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=110.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK-------------------RNFQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 225 (959)
.+++|-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..--. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999996432 34567899999999999998887631100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
+.+..+....+. +...+.+.+......++.-++|+|++...+......++..+......++
T Consensus 91 ~eidaas~~~v~-------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVDAASRTKVE-------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEcccccCCHH-------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222221111111 1222222222111345667899999987766677778887777666777
Q ss_pred EEEeccc-hhHHH-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHH
Q 002154 306 LLITTRK-ETVAL-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKT 375 (959)
Q Consensus 306 iivTtr~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 375 (959)
+|++|.+ ..+.. .......+++.+++.++....+.+.+...+-... .+....|++.++|.+.-+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 7766544 22221 1233567889999999888777666533221111 23345788999998864443
No 85
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.9e-05 Score=92.67 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=114.3
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+. +.... +-.....++.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHh
Confidence 47999999999998888542 23456789999999999999999863 11100 000001112222333333
Q ss_pred HHhCCCC----CcccccHH---HHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKPGS----AKELVEFQ---SLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~~~----~~~~~~~~---~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.....+. .......+ ++.+.+...-..+++-++|+|++...+.+..+.+...+......+.+|+++.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2221100 00111222 22222222112356778999999765555667777777665566667766643 2332
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
. .......+.+.+++.++....+...+...+... -.+.+..|++.++|.+..+....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 122346788999999998888887764322111 13455689999999886554433
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.2e-05 Score=85.20 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=110.4
Q ss_pred cccccchhHHHHHHHHHhccCCc----CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK----EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 240 (959)
.+++|-+..++.|..++...... ...-...+.++|+.|+|||++|+.+.+. +-..... + .++..-..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--C----CCCCCCHHH
Confidence 36889999999999998654210 0113567889999999999999888652 1000000 0 000000011
Q ss_pred HHHHHHhCC--------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 241 RAIIEALKP--------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 241 ~~i~~~l~~--------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
+.+...-.+ +.......+..+.+.+...-..+++-++|+|++...+......+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111100000 000011112222222222112355668888999877666666777777766667767776665
Q ss_pred h-hHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 313 E-TVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 313 ~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
. .+... ......+.+.+++.++..+.+.+.. ... .+.+..++..++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~------~~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD------GVD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 33322 2335789999999999998887432 111 244567899999999755444
No 87
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=3.1e-06 Score=90.28 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhCCCCC
Q 002154 175 NELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF--DEFRIARAIIEALKPGSA 252 (959)
Q Consensus 175 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~ 252 (959)
-++++.+..- +.-+...|+|++|+||||||+.||++.... +|+..+||.+.+.. .+.++++.+...+- ...
T Consensus 157 ~rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv-~st 229 (416)
T PRK09376 157 TRIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVV-AST 229 (416)
T ss_pred eeeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEE-EEC
Confidence 3566666533 345678899999999999999999975444 89999999998887 67777777763221 111
Q ss_pred cccccH------HHHHHHHHHHHhcCcEEEEEeccCC
Q 002154 253 KELVEF------QSLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 253 ~~~~~~------~~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
.+.... ......-......|++++|++|++.
T Consensus 230 ~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 230 FDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111111 1112222222235899999999994
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3e-05 Score=89.30 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=110.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK-------------------RNFQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 225 (959)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+.+..--. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886432 34567899999999999999887631100 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
+++..+.... ......+.......-..+++-++|+|++...+......+...+......+.
T Consensus 91 ~ei~~~~~~~-------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 91 IEVDAASNTQ-------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eEeeccccCC-------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1222111111 111112222211111346677999999977666667777777777656676
Q ss_pred EEEeccc-hhHH-HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHHH
Q 002154 306 LLITTRK-ETVA-LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIASL 379 (959)
Q Consensus 306 iivTtr~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~ 379 (959)
+|++|.+ ..+. ........+++.+++.++....+.+.+...+-. .-.+....|++.++|.+- |+..+-.+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7766644 2222 112224688999999999988887765322211 122344578999999775 44444333
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=6.8e-05 Score=77.35 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=91.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... ......+.+ .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~-----~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVLEGM-----E 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHHHHh-----h
Confidence 357899999999999999999884 222223345666532100 001111111 1
Q ss_pred CcEEEEEeccCCCCC-cCCchh-HhhhcCCC-CCC-CEEEEeccch---------hHHHhhcccceEecCCCChhhhHHH
Q 002154 272 GEKFLLVLDDVWNED-YGKWEP-FYNCLKSS-PHG-SKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 338 (959)
+.-+|++||+.... ...|+. +...+... ..| .++|+||+.. .....+....++++.++++++-.++
T Consensus 97 -~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 -QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred -hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 12378999995432 234543 22333221 223 4699999753 2333345567999999999999999
Q ss_pred HHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 339 FESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
+.+++...+ -.--+++..-|++.+.|..-++..+-..+
T Consensus 176 l~~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 887664321 12224556678888888776665444433
No 90
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.8e-06 Score=98.65 Aligned_cols=93 Identities=27% Similarity=0.394 Sum_probs=53.2
Q ss_pred ccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCC
Q 002154 587 LRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLM 666 (959)
Q Consensus 587 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 666 (959)
++.|+|+++ .....+|..++++.+|++|+|++|.....+|..++++++|++|+|++|.....+|..+++|++|+
T Consensus 420 v~~L~L~~n------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCC------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 555666651 11234566666666666666666652235666666666666666666653345666666666666
Q ss_pred eeecCCccccccCCccCcC
Q 002154 667 YLYNAGTDSLRYLPAGIDE 685 (959)
Q Consensus 667 ~L~l~~~~~l~~~p~~i~~ 685 (959)
+|++++|.....+|..++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECcCCcccccCChHHhh
Confidence 6666666444455555443
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.6e-08 Score=96.28 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=86.6
Q ss_pred ccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceE
Q 002154 709 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKL 788 (959)
Q Consensus 709 ~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 788 (959)
++.+=.+|+.|+++.+.++.. .+....+.+++.|.+|+|+||..... ........+ -++|..|
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~~-------------~Vtv~V~hi--se~l~~L 291 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFTE-------------KVTVAVAHI--SETLTQL 291 (419)
T ss_pred HHhccccceeeccccccccch--hHHHHHHHhhhhHhhcCchHhhccch-------------hhhHHHhhh--chhhhhh
Confidence 344445566777776665433 44555677899999999999972111 011111222 3589999
Q ss_pred EEeeeCCCCCCCCcCh----hhcccccceeeecCccCCCc--CCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCc
Q 002154 789 VIDEYRGRRNVVPINW----IMSLTNLRDLSLNWWRNCEH--LPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGS 862 (959)
Q Consensus 789 ~l~~~~~~~~~~~p~~----~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 862 (959)
+|+||.-.- . .+- ...+++|.+|+|++|..++. +..+-+++-|++|.++.|..+ +|..+...
T Consensus 292 NlsG~rrnl--~-~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l------- 359 (419)
T KOG2120|consen 292 NLSGYRRNL--Q-KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL------- 359 (419)
T ss_pred hhhhhHhhh--h-hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee-------
Confidence 999985332 1 222 23688999999998876654 334667888888888888643 23333322
Q ss_pred cccCCCccceeeecccc
Q 002154 863 SVIAFPKLRRLRFVCME 879 (959)
Q Consensus 863 ~~~~fp~L~~L~l~~~~ 879 (959)
...|+|.+|++.+|-
T Consensus 360 --~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 --NSKPSLVYLDVFGCV 374 (419)
T ss_pred --ccCcceEEEEecccc
Confidence 256777777777653
No 92
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.3e-05 Score=89.63 Aligned_cols=200 Identities=15% Similarity=0.162 Sum_probs=116.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ--KRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~ 242 (959)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+.+..--..... ...+ ..+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 47999999999999998643 2355788999999999999999877311110000 0000 00111111122
Q ss_pred HHHHhCC-------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chh
Q 002154 243 IIEALKP-------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KET 314 (959)
Q Consensus 243 i~~~l~~-------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 314 (959)
|...... .......++.++...+...-..+++-++|+|++...+......+...+..-...+++|++|. ...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211110 00111122233333333222335566899999976665567777777776666777776553 333
Q ss_pred HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 315 VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+... ......+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 233568999999999999998887643222111 2445578999999887554433
No 93
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=4.6e-07 Score=90.29 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=57.5
Q ss_pred hhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCC
Q 002154 777 EALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGV 855 (959)
Q Consensus 777 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~ 855 (959)
++..-.|.++.|+++.|.... ...+..+++|+.|+|++|. +..+. +-.+|.|.+.|.|.+. .++.+..
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSG----- 369 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRT----VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-KIETLSG----- 369 (490)
T ss_pred hhhhhccceeEEeccccceee----ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh-hHhhhhh-----
Confidence 344555666666666666554 2335566666666666663 22222 2234556666666542 1322210
Q ss_pred CCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCC
Q 002154 856 ESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCP 909 (959)
Q Consensus 856 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~ 909 (959)
...+=+|..|++.+ ++++++.... .++++|+|+.|.+.++|
T Consensus 370 --------L~KLYSLvnLDl~~-N~Ie~ldeV~----~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 --------LRKLYSLVNLDLSS-NQIEELDEVN----HIGNLPCLETLRLTGNP 410 (490)
T ss_pred --------hHhhhhheeccccc-cchhhHHHhc----ccccccHHHHHhhcCCC
Confidence 11344566666665 3443332211 36777888877777765
No 94
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.12 E-value=1.5e-07 Score=101.93 Aligned_cols=190 Identities=25% Similarity=0.239 Sum_probs=139.2
Q ss_pred cEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCe
Q 002154 588 RALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMY 667 (959)
Q Consensus 588 r~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 667 (959)
...||+. +...++|..++.+..|+.|.|..|. +..+|..+++|..|.+|||+.|. +..+|..++.| -|+.
T Consensus 78 ~~aDlsr-------NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkv 147 (722)
T KOG0532|consen 78 VFADLSR-------NRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKV 147 (722)
T ss_pred hhhhccc-------cccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-ccee
Confidence 4567877 7788999999999999999999998 99999999999999999999987 99999999876 4888
Q ss_pred eecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCce
Q 002154 668 LYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDL 747 (959)
Q Consensus 668 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 747 (959)
|-+++| .++.+|.+++-+..|..|+...+...+ ....+..|..|+.|.+....- ..++..+. .-.|..|
T Consensus 148 li~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr~l~vrRn~l-----~~lp~El~-~LpLi~l 216 (722)
T KOG0532|consen 148 LIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLRDLNVRRNHL-----EDLPEELC-SLPLIRL 216 (722)
T ss_pred EEEecC-ccccCCcccccchhHHHhhhhhhhhhh----chHHhhhHHHHHHHHHhhhhh-----hhCCHHHh-CCceeee
Confidence 888877 789999999977778887776655443 566677777777776654211 12223333 3457778
Q ss_pred EEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhh---cccccceeeecCc
Q 002154 748 DLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIM---SLTNLRDLSLNWW 819 (959)
Q Consensus 748 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~---~l~~L~~L~L~~~ 819 (959)
+++++.+ ..++-.+..+..|+.|.|.+|+... ||.-+. ...=-++|+..-|
T Consensus 217 DfScNki------------------s~iPv~fr~m~~Lq~l~LenNPLqS---PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKI------------------SYLPVDFRKMRHLQVLQLENNPLQS---PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCce------------------eecchhhhhhhhheeeeeccCCCCC---ChHHHHhccceeeeeeecchhc
Confidence 8887762 2234456677888888888888765 243332 2233345666666
No 95
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.6e-07 Score=96.11 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=33.3
Q ss_pred hCCCCCCCceEEEeeeCCCCCCCCcCh-----hhcccccceeeecCccC--CCcCCCCCCcCCCcceee
Q 002154 778 ALGPPPNLKKLVIDEYRGRRNVVPINW-----IMSLTNLRDLSLNWWRN--CEHLPPLGKLPSLEDLWI 839 (959)
Q Consensus 778 ~l~~~~~L~~L~l~~~~~~~~~~~p~~-----~~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~l 839 (959)
....++.|..|+++.+......+ |+. ...+++|++|++..|.. +.++..+..+++|+.|.+
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~-~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAE-PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccccchhhhhccccCcchhcC-CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 34445666666666665554333 322 23566777777776643 334444455566666654
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=3.5e-05 Score=79.50 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=87.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
....+.|+|+.|+|||+||+.+++... .... ...+++..... ..+ .. .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~----------~~~-------------------~~-~ 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL----------LAF-------------------DF-D 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH----------HHH-------------------hh-c
Confidence 346788999999999999999998421 1111 23445433210 000 01 1
Q ss_pred cCcEEEEEeccCCCCCcCCchhHhhhcCCC-CCCC-EEEEeccchhHHH--------hhcccceEecCCCChhhhHHHHH
Q 002154 271 EGEKFLLVLDDVWNEDYGKWEPFYNCLKSS-PHGS-KLLITTRKETVAL--------IMGSTQVISVNELSEMECWSVFE 340 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~ 340 (959)
...-+||+||+...+...-..+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.
T Consensus 89 -~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 89 -PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALK 167 (227)
T ss_pred -ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH
Confidence 22347888999654332323344444321 2344 3666666432111 22224688999999988767666
Q ss_pred HhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 341 SLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
+.+...+ ..--++....+++.+.|.+..+..+...+
T Consensus 168 ~~~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5432111 11223455578888999998887766655
No 97
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.7e-06 Score=91.22 Aligned_cols=208 Identities=17% Similarity=0.136 Sum_probs=127.4
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.++|.+++.++..+..+.. ...+.|+++|.|+++.+-+..+.. +-.+...+++|+.|+|+.+. +...-++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nr-------l~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNR-------LSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhccccccc-------ccCCccc
Confidence 5566777777665533321 223489999999999986544444 34557899999999999833 3222111
Q ss_pred --ccccCCccEEeeccCCCcc--ccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCC--ccCc
Q 002154 611 --IEKLLHLKYLSLAHQEAIE--RLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLP--AGID 684 (959)
Q Consensus 611 --i~~l~~L~~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~ 684 (959)
-..+.||+.|.|++|. +. .+-...-.+++|+.|+|..|..+..-......+..|+.|++++|+ +...+ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccc
Confidence 2368899999999998 54 233334568899999999885343333344557789999999884 44555 3467
Q ss_pred CCCCCCccCceeecCccCCCCCc---cccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecC
Q 002154 685 ELIRLRSVRKFVVGGGYDRACSL---GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGH 753 (959)
Q Consensus 685 ~L~~L~~L~~~~~~~~~~~~~~~---~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 753 (959)
.|+.|..|.+...+..+...... .-...+++|+.|.+....- .. ......+...++|+.|.+..+.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~--w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RD--WRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-cc--ccccchhhccchhhhhhccccc
Confidence 78888888776665544222222 1123455666666654221 00 1112234445666666665554
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=3e-05 Score=86.03 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=100.5
Q ss_pred CccccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD 235 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 235 (959)
...++.|+++.+++|.+.+..+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457999999999999887532110 1123566899999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-----------cCCchhHhhh---cCC--
Q 002154 236 EFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-----------YGKWEPFYNC---LKS-- 299 (959)
Q Consensus 236 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~---l~~-- 299 (959)
..+.... ++ ........+.+..-...+.+|++||++.-. ......+... +..
T Consensus 190 -~~l~~~~---~g--------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 -SELVRKY---IG--------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -HHHHHHh---hh--------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 11 011111222222133467899999985421 0111122222 221
Q ss_pred CCCCCEEEEeccchhHH-Hhh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 300 SPHGSKLLITTRKETVA-LIM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 300 ~~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
...+.+||.||...... ..+ .-...+.+...+.++..++|..++..... ...-++. .+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~~~----~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVDLE----AIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCCHH----HHHHHcCCCC
Confidence 12466788888753211 111 11457889999999999999887643321 1112233 6777787754
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7e-05 Score=87.03 Aligned_cols=204 Identities=17% Similarity=0.202 Sum_probs=112.7
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-eCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC-VSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i 243 (959)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+.+.---...++.-.|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 47899999999998888532 2345688999999999999988866311101010000110 00111111112222
Q ss_pred HHHhCCC-------CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chhH
Q 002154 244 IEALKPG-------SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KETV 315 (959)
Q Consensus 244 ~~~l~~~-------~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 315 (959)
...-..+ ......++.++.+.+...-..+++-++|+|++...+......+...+..-...+.+|++|. ...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111000 0011112222222222111335566889999977666667778888877656666665553 3333
Q ss_pred HH-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHH
Q 002154 316 AL-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIA 377 (959)
Q Consensus 316 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 377 (959)
.. .......+++.+++.++....+.+.+...+... ..+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 32 233467899999999998888877653222111 23445579999999554 444443
No 100
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=8e-07 Score=88.58 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
-...|.++++++|....+ ..+.+-.+.+|+|++++ +.+..+ .++..|.+|..||||+|. +.++-..=
T Consensus 282 TWq~LtelDLS~N~I~~i----DESvKL~Pkir~L~lS~-------N~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI----DESVKLAPKLRRLILSQ-------NRIRTV-QNLAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhhh----hhhhhhccceeEEeccc-------cceeee-hhhhhcccceEeecccch-hHhhhhhH
Confidence 345566666666653332 23344556667777776 445444 235566667777777766 55554444
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCC--ccCcCCCCCCccCceee
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLP--AGIDELIRLRSVRKFVV 697 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~ 697 (959)
.+|-|.++|.|.+|. ++.+ +++.+|-+|..|++.+| .+..+. .+||+|+-|++|.+..+
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCC
Confidence 466667777777654 5555 45666777777777666 343332 34566665655554433
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=98.07 E-value=6.9e-05 Score=77.17 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=92.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... .....+. ++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~~~~~~~-----~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------GPELLDN-----LE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------hHHHHHh-----hh
Confidence 467899999999999999999874 222223456776432 1110 0112222 22
Q ss_pred CcEEEEEeccCCCCC-cCCchh-HhhhcCC-CCCCCEEEEeccchh---------HHHhhcccceEecCCCChhhhHHHH
Q 002154 272 GEKFLLVLDDVWNED-YGKWEP-FYNCLKS-SPHGSKLLITTRKET---------VALIMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 339 (959)
+-. +||+||+.... ...|+. +...+.. ...|..+|+|++... ....+.....+++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 67889995421 234544 4444432 234677888887532 1122333467899999999999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 340 ESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
..++...+ ...+ .++..-|++++.|..-.+..+-..|
T Consensus 176 ~~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 86664321 1112 4566678888888776665544444
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=8.7e-05 Score=82.66 Aligned_cols=186 Identities=17% Similarity=0.223 Sum_probs=107.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc------ccccceeE-EEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV------KRNFQKRI-WVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~v~~~~~~~ 237 (959)
.+++|.+...+.+.+.+... .-.+.+.++|+.|+||||+|+.+.+...- ...|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 46899999999999998642 23568899999999999999988763111 01121111 1111010001
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chhHH
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KETVA 316 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 316 (959)
+..+.+++.+ ......+++-++|+|++.......+..+...+......+.+|++|. ...+.
T Consensus 91 ~~i~~l~~~~------------------~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 DDIRNLIDQV------------------RIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HHHHHHHHHH------------------hhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1111222211 1111234556899999965544456667666655444555665553 22222
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHH
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIAS 378 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~ 378 (959)
. .......+++.++++++....+...+...+-... .+....|++.++|.+- ++..+-.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2 1233457899999999999888876643222111 3455578889998665 4444433
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=1.5e-06 Score=89.06 Aligned_cols=246 Identities=20% Similarity=0.223 Sum_probs=123.1
Q ss_pred CCCCccEEEecCCcchh-hhhhhhHHhccCCcccEEEccccCccccccccccccccc-------cccCCccEEeeccCCC
Q 002154 556 GLRGLRSLLVESDEYSW-FSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENI-------EKLLHLKYLSLAHQEA 627 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~-~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i-------~~l~~L~~L~L~~~~~ 627 (959)
.+..+..+.++++.+.. -...+...+.+.+.||.-++++ ++.+-...++|+.+ -.+++|++|+||.|-
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd---~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA- 103 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD---MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA- 103 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh---hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-
Confidence 56777888888876421 1122444567777888888886 11112234445433 355678888888775
Q ss_pred cc-----ccchhhccCCCCcEEecCCCcCCcccchh--------------hhccccCCeeecCCccccccCCccCcCCCC
Q 002154 628 IE-----RLPEALCELYNLERLNVSGCSHLRELPRG--------------IGKLRKLMYLYNAGTDSLRYLPAGIDELIR 688 (959)
Q Consensus 628 i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--------------i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 688 (959)
+. .+-.-|.++++|++|.|.+|. +...-.. +.+=++||.+..++| .+..-+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~------ 175 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGAT------ 175 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHH------
Confidence 32 233345567777777777776 4321111 112233444444333 22211110
Q ss_pred CCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCc
Q 002154 689 LRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENE 768 (959)
Q Consensus 689 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 768 (959)
.....++..+.|..+.+.....-+.-..+....+..+++|+.|+|..|....
T Consensus 176 ----------------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~------------ 227 (382)
T KOG1909|consen 176 ----------------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL------------ 227 (382)
T ss_pred ----------------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh------------
Confidence 0111123334444443332211111113445556667777777776654110
Q ss_pred hhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChh----hcccccceeeecCccCCCc----C-CCCCCcCCCcceee
Q 002154 769 EDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWI----MSLTNLRDLSLNWWRNCEH----L-PPLGKLPSLEDLWI 839 (959)
Q Consensus 769 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~----~~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~l 839 (959)
.....+-..++.+++|+.|++.+|.....-. ...+ ...++|+.|.+.+|..... + -.....|.|..|.|
T Consensus 228 -egs~~LakaL~s~~~L~El~l~dcll~~~Ga-~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 228 -EGSVALAKALSSWPHLRELNLGDCLLENEGA-IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred -HHHHHHHHHhcccchheeecccccccccccH-HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 1112334455666677777777776544100 1111 1466777777777742211 1 13445777777777
Q ss_pred cCcc
Q 002154 840 QGMK 843 (959)
Q Consensus 840 ~~~~ 843 (959)
++|.
T Consensus 306 ngN~ 309 (382)
T KOG1909|consen 306 NGNR 309 (382)
T ss_pred Cccc
Confidence 7654
No 104
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=7.8e-06 Score=87.87 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCccccc-----HHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP--FDEFRIARAIIEALKPGSAKELVE-----FQSLMQ 263 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~ 263 (959)
.-..++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-......... ...+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567999999999999999999996433 37999999998865 788999999854432111111110 112233
Q ss_pred HHHHHHhcCcEEEEEeccCCC
Q 002154 264 HIQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 264 ~l~~~~l~~k~~LlVlDdv~~ 284 (959)
........|++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 333333468999999999943
No 105
>PRK09087 hypothetical protein; Validated
Probab=98.06 E-value=3.7e-05 Score=78.43 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=87.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+..+++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~-----------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA-----------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh-----------------------hh
Confidence 46789999999999999999887421 1233321 111111111 11
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCC-CCCCCEEEEeccc---------hhHHHhhcccceEecCCCChhhhHHHHHH
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKS-SPHGSKLLITTRK---------ETVALIMGSTQVISVNELSEMECWSVFES 341 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 341 (959)
+ -+|++||+..... .-+.+...+.. ...|..+|+|++. ......+.....+++++++.++-.+++.+
T Consensus 88 ~--~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 E--GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred c--CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1 2788899954211 11223333322 1336779998874 23333445567999999999999999998
Q ss_pred hhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 342 LAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
.+....- . --+++..-|++++.|..-++..+-.
T Consensus 165 ~~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 165 LFADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8743211 1 2245556788888887776664333
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.5e-05 Score=86.29 Aligned_cols=200 Identities=16% Similarity=0.180 Sum_probs=115.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-+..++.|...+... .-...+.++|+.|+||||+|+.+.+..--....+ ...++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 46899888888888888532 2356788999999999999998887421100000 00111111122221
Q ss_pred HHhCCC-------CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKPG-------SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~~-------~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.....+ ........+.+.+.+...-..+++-++|+|++...+...+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 111000 00011112222222222213466779999999776666677787777654445566665544 3333
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch-hHHHHHHHHh
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP-LAAKTIASLL 380 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~~l 380 (959)
.. ......+++.+++.++....+...+....... ..+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 23346889999999999988887654322111 2345557889999965 6777776554
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=6.1e-05 Score=90.44 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=114.7
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-..... ...+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHH
Confidence 478999999999999986432 345688999999999999988876311000000 00000001111111
Q ss_pred HH---------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hh
Q 002154 245 EA---------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ET 314 (959)
Q Consensus 245 ~~---------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 314 (959)
.. +.........++..+.+.+...-..+++-++|||++...+.+.+..|+..+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 10 000000111122222222221113456668899999888777888888888876667777766543 33
Q ss_pred HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhH-HHHHHHHh
Q 002154 315 VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLA-AKTIASLL 380 (959)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla-i~~~~~~l 380 (959)
+... ......|++.+++.++..+++.+.+-..+... -.+....|++.++|.+.. +..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 23367899999999998888877653222111 123345789999998854 44444433
No 108
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.00014 Score=78.09 Aligned_cols=213 Identities=11% Similarity=0.078 Sum_probs=126.4
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.+..++||+.|++.+.+|+...- .....+-+.|.|-+|.|||.+...|+.+..-...=.++++++...-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997654 2456788999999999999999999986332211124577777766678889999
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcC-cEEEEEeccCCCCCcCCchhHhhhcCCC-CCCCEEEEecc--chh----
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEG-EKFLLVLDDVWNEDYGKWEPFYNCLKSS-PHGSKLLITTR--KET---- 314 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr--~~~---- 314 (959)
|...+..+....... .+....+..+.-+. +.+|+|+|+++.-....-..+...|.+. -+++++|+.-- .-+
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 988873121111111 34445555552333 3799999998542222223333444442 34666554321 111
Q ss_pred -HHHhh----cccceEecCCCChhhhHHHHHHhhccCCCC-CCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 315 -VALIM----GSTQVISVNELSEMECWSVFESLAFFGKSM-QERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 315 -v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
..... -....+...|-+.++-.++|..+....... ..+..++-.|++++.--|-+--|+.+.-+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 11111 124578889999999999999987433221 12223443344444333444444444443
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00017 Score=82.02 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=110.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc----cc---------------ccccee
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS----VK---------------RNFQKR 225 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~---------------~~F~~~ 225 (959)
.+++|.+...+.+.+++... .-...+.++|+.|+||||+|+.+....- .. +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 36899999999999998643 2345677899999999999988876311 00 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCE
Q 002154 226 IWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSK 305 (959)
Q Consensus 226 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 305 (959)
+++..+.. ....+.+.+...+...-..+++-++|+|++...+......+...+........
T Consensus 91 ~eidaas~-------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASN-------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccC-------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11211110 11111223333332222346777999999976655566677777776555566
Q ss_pred EEEecc-chhHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 306 LLITTR-KETVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 306 iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+|++|. ...+... ......+.+.+++.++....+.+.+-..+-.. -.+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 665553 3333222 23356899999999999888887664322111 12344578889999776554443
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00012 Score=84.50 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=116.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+..--....+ + .+++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 47899999999999998643 2345678999999999999998876311000000 0 0111111111111
Q ss_pred HH---------hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chh
Q 002154 245 EA---------LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KET 314 (959)
Q Consensus 245 ~~---------l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 314 (959)
.. +............++.+.+...-..+++-++|+|++...+......++..+......+.+|++|. ...
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 00000111222223333332221235666889999987777777888888887666666665554 333
Q ss_pred HHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHHHhc
Q 002154 315 VALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIASLLL 381 (959)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l~ 381 (959)
+... ......+++.+++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3322 233578999999999988888776543221111 2344578899999775 5555555443
No 111
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=6.1e-06 Score=64.85 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=24.6
Q ss_pred CccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCc
Q 002154 616 HLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGT 673 (959)
Q Consensus 616 ~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 673 (959)
+|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444443 444443 33444444444444433 334332 2344444444444444
No 112
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.02 E-value=2.1e-05 Score=86.16 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=77.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.++++.++..+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||+++..++..+++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4578889999999999863 3467889999999999999998864444567888899999988877665433
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHH-hcCcEEEEEeccCCCCCcCC-chhHhhhcC
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYV-VEGEKFLLVLDDVWNEDYGK-WEPFYNCLK 298 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~-l~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 298 (959)
.+....-.....-..+.+.... -.+++++||+|++...+.+. +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1111000000011122222220 12478999999996654332 444444443
No 113
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=3.4e-07 Score=95.74 Aligned_cols=267 Identities=20% Similarity=0.185 Sum_probs=166.7
Q ss_pred CCccEEeeccCCCcc--ccchhhccCCCCcEEecCCCcCCccc--chhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 615 LHLKYLSLAHQEAIE--RLPEALCELYNLERLNVSGCSHLREL--PRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 615 ~~L~~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
..|+.|+|+|+..+. .+-....+.+|++.|++.+|..++.- -.--..+.+|+||++..|..++...- +
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--------k 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--------K 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--------H
Confidence 358899999987544 34445678999999999999866542 12234678999999998865543210 0
Q ss_pred ccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchh
Q 002154 691 SVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEED 770 (959)
Q Consensus 691 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 770 (959)
.| -...++|..+.+..+..+.. ....+...+++.++.+.+.++. . .
T Consensus 210 ~l-----------------a~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~----e-----------~ 255 (483)
T KOG4341|consen 210 YL-----------------AEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL----E-----------L 255 (483)
T ss_pred HH-----------------HHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc----c-----------c
Confidence 00 01123344444444444332 2223334556667777666543 1 0
Q ss_pred hHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhh--cccccceeeecCccCCCcCC--CCC-CcCCCcceeecCccCc
Q 002154 771 KDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIM--SLTNLRDLSLNWWRNCEHLP--PLG-KLPSLEDLWIQGMKSV 845 (959)
Q Consensus 771 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~--~l~~L~~L~L~~~~~~~~l~--~l~-~l~~L~~L~l~~~~~l 845 (959)
..+.+...-...+-+.++++..|...++ . .-|.- .+..|+.|..++|....+.+ .|+ +.++|+.|.+.+|..+
T Consensus 256 ~le~l~~~~~~~~~i~~lnl~~c~~lTD-~-~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 256 ELEALLKAAAYCLEILKLNLQHCNQLTD-E-DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred cHHHHHHHhccChHhhccchhhhccccc-h-HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 1122222222233455566556644331 1 11221 57899999999997766543 343 5799999999999988
Q ss_pred eEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCC-----CcCCCC
Q 002154 846 KRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKAL-----PDHLLQ 920 (959)
Q Consensus 846 ~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l-----p~~l~~ 920 (959)
...+...++. ..+.|+.+++.+|....+-... ....++|.|+.|.++.|..++.- ...-..
T Consensus 334 sd~~ft~l~r----------n~~~Le~l~~e~~~~~~d~tL~----sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 334 SDRGFTMLGR----------NCPHLERLDLEECGLITDGTLA----SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred hhhhhhhhhc----------CChhhhhhcccccceehhhhHh----hhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 7776665543 6789999999987655443221 12447899999999999877653 333445
Q ss_pred CCCcceEEEccCcchHHhh
Q 002154 921 KSTLQGFGIYHCPILEERY 939 (959)
Q Consensus 921 l~~L~~L~l~~c~~l~~~~ 939 (959)
+..|..+++.+||.+++..
T Consensus 400 ~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ccccceeeecCCCCchHHH
Confidence 7789999999999998764
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.5e-05 Score=86.66 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=111.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccc-cc---eeEE-EEeCCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN-FQ---KRIW-VCVSEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~w-v~v~~~~~~~~~ 239 (959)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++..--... .. |..- .+....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 46899999999999998643 23567789999999999999888763100000 00 0000 0000000000
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEec-cchhHHH-
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITT-RKETVAL- 317 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~- 317 (959)
.+...........+.+.+.+...-..+++-++|+|++......++..++..+......+.+|++| +...+..
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000001111223333333332234667799999997766667778887777655565555544 4444432
Q ss_pred hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHH
Q 002154 318 IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIA 377 (959)
Q Consensus 318 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 377 (959)
.......+++.+++.++....+...+...+-.. -.+.+..|++.++|.+. |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 233356899999999999888877653222111 12345579999999775 444443
No 115
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=5.3e-06 Score=65.20 Aligned_cols=58 Identities=29% Similarity=0.482 Sum_probs=51.4
Q ss_pred CcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCS 650 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 650 (959)
++|++|++++ +.+..+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~-------n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-------NKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-------STESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-------CCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 4789999999 67888874 68899999999999998 998886 77999999999999985
No 116
>PF14516 AAA_35: AAA-like domain
Probab=98.00 E-value=0.00037 Score=75.83 Aligned_cols=204 Identities=15% Similarity=0.172 Sum_probs=119.6
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-----CCHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-----FDEF 237 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~ 237 (959)
+.+..|+|...-+++.+.+..+ -..+.|.|+-.+|||+|...+.+..+.. .+ ..+++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 4456789986777777777532 3589999999999999999998753322 33 3457776542 2455
Q ss_pred HHHHHHHHHhC----CCCCc------ccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCCc--CCchhHhhhcCC----
Q 002154 238 RIARAIIEALK----PGSAK------ELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNEDY--GKWEPFYNCLKS---- 299 (959)
Q Consensus 238 ~~~~~i~~~l~----~~~~~------~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~~--~~~~~l~~~l~~---- 299 (959)
.+++.++..+. ....- ...........+.+.++. +++.+|++|++...-. ...+++...++.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 55655555443 21100 111222333344443232 6899999999954221 112233333321
Q ss_pred CC----CCC-EEEEeccc--hhHHHh----hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC
Q 002154 300 SP----HGS-KLLITTRK--ETVALI----MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG 368 (959)
Q Consensus 300 ~~----~gs-~iivTtr~--~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 368 (959)
.. ... ++++.... ...... .+....++|++++.+|...|..++-.. ...+ ..++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~----~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQE----QLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHH----HHHHHHHHHCC
Confidence 11 111 22222211 111111 122458999999999999998876321 1112 26689999999
Q ss_pred chhHHHHHHHHhcCC
Q 002154 369 LPLAAKTIASLLLSK 383 (959)
Q Consensus 369 ~Plai~~~~~~l~~~ 383 (959)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=2.7e-05 Score=88.30 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=112.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-+...+.+...+... .-..+..++|+.|+||||+|+.+.+..--....+. .++..-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 46899999899999988532 23557789999999999999877653100000000 0000000011110
Q ss_pred HHhCCC----CCcccccHHHHHHHHHHH---HhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH
Q 002154 245 EALKPG----SAKELVEFQSLMQHIQEY---VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA 316 (959)
Q Consensus 245 ~~l~~~----~~~~~~~~~~~~~~l~~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 316 (959)
...... ........+.+...+... ...+++-++|+|++...+.++...++..+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 000000 000001122222222211 022556688999998777777777888887766677777777552 221
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
. .......+++.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 122356899999999999888877654322211 23455689999999886554443
No 118
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.97 E-value=6.8e-06 Score=92.94 Aligned_cols=174 Identities=26% Similarity=0.328 Sum_probs=114.9
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCC-cccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLT-CLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
..+.+..|.+.++.. .. ++.....+. +|+.|++++ +.+..+|..++.+++|+.|++++|. +..+|..
T Consensus 114 ~~~~l~~L~l~~n~i---~~-i~~~~~~~~~nL~~L~l~~-------N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNNI---TD-IPPLIGLLKSNLKELDLSD-------NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCccc---cc-Cccccccchhhcccccccc-------cchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 456677777777663 23 233244443 788888888 7788887778888888888888888 8888887
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCC
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLN 714 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 714 (959)
.+.+.+|+.|+++++. +..+|..+..+..|..|.++++. ....+..+.++.++..|......... .+..+..+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED----LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee----ccchhcccc
Confidence 7788888888888876 88888877777778888888773 34555566777777777633222211 133445555
Q ss_pred CCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecC
Q 002154 715 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGH 753 (959)
Q Consensus 715 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 753 (959)
.|+.|.+.+..- . .. ..+....+++.|+++.+.
T Consensus 256 ~l~~L~~s~n~i-~---~i--~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 256 NLETLDLSNNQI-S---SI--SSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccceeccccccc-c---cc--ccccccCccCEEeccCcc
Confidence 566666554211 1 11 115566778888887765
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00025 Score=75.14 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=73.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++ ..... +.. .......+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~-g~~-----~~~~~~~l~~a---- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYI-GHT-----APKTKEVLKKA---- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHh-ccc-----hHHHHHHHHHc----
Confidence 4588999999999999999977321111111122455441 122 22221 111 11122223222
Q ss_pred cEEEEEeccCCCC---------CcCCchhHhhhcCCCCCCCEEEEeccchhHHHhh--------cccceEecCCCChhhh
Q 002154 273 EKFLLVLDDVWNE---------DYGKWEPFYNCLKSSPHGSKLLITTRKETVALIM--------GSTQVISVNELSEMEC 335 (959)
Q Consensus 273 k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~ 335 (959)
..-+|++|++..- ..+..+.+...+.....+.+||+++......... .-...+.+++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999999542 1112233444454444566777777654433221 1144789999999999
Q ss_pred HHHHHHhhcc
Q 002154 336 WSVFESLAFF 345 (959)
Q Consensus 336 ~~lf~~~~~~ 345 (959)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.96 E-value=0.00026 Score=70.84 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=75.2
Q ss_pred ccCCccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 002154 160 SSIDESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 160 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 239 (959)
.++.-..++|.+.+++.|++-...-- .+....-+.++|..|.|||++++.+.+...-++ .+ -|.|.+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k------- 88 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSK------- 88 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECH-------
Confidence 33455679999999998887543222 223456788899999999999999987422111 11 122221
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCC---CC-CCEEEEeccchh
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSS---PH-GSKLLITTRKET 314 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~iivTtr~~~ 314 (959)
.+..+...+...++. +..||+|++||+.- .....+..++..|..+ .+ +..|..||..++
T Consensus 89 -------------~~L~~l~~l~~~l~~---~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 -------------EDLGDLPELLDLLRD---RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -------------HHhccHHHHHHHHhc---CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122334444445443 35799999999843 3334566777776643 22 334445554443
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00015 Score=82.00 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=108.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc---------------------cccc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK---------------------RNFQ 223 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 223 (959)
.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+.+..--. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 47899999999999998542 234678899999999999998886531000 0111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCC
Q 002154 224 KRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHG 303 (959)
Q Consensus 224 ~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 303 (959)
.+++...... .......+.+.+......+++-++|+|++.....+....+...+......
T Consensus 92 -~~~i~g~~~~-------------------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHR-------------------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccC-------------------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1111110000 11111222222211112356678899999665555566677777765556
Q ss_pred CEEEEeccc-hhHHH-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHHH
Q 002154 304 SKLLITTRK-ETVAL-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIAS 378 (959)
Q Consensus 304 s~iivTtr~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~ 378 (959)
+.+|++|.. ..+.. .......+++.++++++....+.+.+-..+.. --.+.+..|++.++|.+- |+..+-.
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 677766643 22222 12335689999999999988887765322211 123455689999999664 4444443
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.95 E-value=7.5e-05 Score=81.49 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=85.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.++..+.+.+++... .-..++.++|++|+||||+|+.+++. .... ...++.+. .. ....+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHH
Confidence 57899999999999998632 24578888999999999999999884 2211 23444443 11 11111111
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC-CcCCchhHhhhcCCCCCCCEEEEeccchh-HHH-hhcc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKSSPHGSKLLITTRKET-VAL-IMGS 321 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~ 321 (959)
..+. ......+.+-++|+||+... ..+....+...+.....++++|+||.... +.. ....
T Consensus 89 ~~~~-----------------~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 TRFA-----------------STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHH-----------------HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1110 00001234557889999654 22223345444555556788898886532 111 1122
Q ss_pred cceEecCCCChhhhHHHHHH
Q 002154 322 TQVISVNELSEMECWSVFES 341 (959)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~ 341 (959)
...+.+...+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677777777776655543
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00013 Score=82.43 Aligned_cols=170 Identities=17% Similarity=0.151 Sum_probs=101.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.|+|..|+|||+|++.+.+.......-..+++++ ..++...+...+.... +. ...+++. ++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~-~~~~~~~-~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KE-IEQFKNE-IC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hH-HHHHHHH-hc
Confidence 45689999999999999999988421111112234444 3456777776664100 11 2223333 22
Q ss_pred CcEEEEEeccCCCCCc-CCc-hhHhhhcCC-CCCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHHHH
Q 002154 272 GEKFLLVLDDVWNEDY-GKW-EPFYNCLKS-SPHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 339 (959)
+.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344888999964321 122 233333332 13355688887642 22223344568889999999999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHH
Q 002154 340 ESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASL 379 (959)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 379 (959)
.+++...+- ...-..++..-|++.++|.|-.+.-+...
T Consensus 285 ~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 998753221 01233566778999999999877655543
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=0.00013 Score=74.29 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=102.2
Q ss_pred ccccch-hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccc-cc-eeEEEEeCCCCCHHHHHHH
Q 002154 166 EIFGRQ-KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN-FQ-KRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 166 ~~~Gr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~v~~~~~~~~~~~~ 242 (959)
.++|-. +..-...+.+.... +.....+.|+|..|+|||.|.+.+++. ..+. -. .+++++ ..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHH
Confidence 345643 23334444444332 224556899999999999999999984 3322 22 344664 4456667
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-CCchh-HhhhcCC-CCCCCEEEEeccch------
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-GKWEP-FYNCLKS-SPHGSKLLITTRKE------ 313 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~------ 313 (959)
+...+.. ...... +.. ++ .-=+|++||++.-.. ..|.. +...+.. ...|.+||+|++..
T Consensus 79 ~~~~~~~------~~~~~~----~~~-~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 79 FADALRD------GEIEEF----KDR-LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHT------TSHHHH----HHH-HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHc------ccchhh----hhh-hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 7666641 112222 222 33 334788899965321 12332 2222222 13467899999652
Q ss_pred ---hHHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 314 ---TVALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 314 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
.....+...-.+++.+.+.++-.+++.+++...+- .--++++.-|++.+.+..-.+..+-.
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 23333455668999999999999999988754222 12345566677777766655544433
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00022 Score=83.45 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=110.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc---------------------cccccc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS---------------------VKRNFQ 223 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 223 (959)
.+++|.+...+.|..++... .-...+.++|+.|+||||+|+.+....- ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 47899999999999998642 2356788999999999999987765310 011222
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCC
Q 002154 224 KRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHG 303 (959)
Q Consensus 224 ~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 303 (959)
. ..+..+...... +...+...+...-..+++-++|+|++...+...+..+...+..-...
T Consensus 92 ~-~~ld~~~~~~vd-------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 92 I-HELDAASNNSVD-------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred e-EEecccccCCHH-------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 1 112211111111 11122222211112345668899999776666788888888876667
Q ss_pred CEEEEec-cchhHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 304 SKLLITT-RKETVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 304 s~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
+.+|++| +...+... ......+++.+++.++....+.+.+...+-.. -.+.+..|++.++|..--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 7766655 43333332 23357899999999999988887654322111 1234557999999976544
No 126
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=1.4e-05 Score=94.78 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=70.8
Q ss_pred ccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccc-ccccccccccCCccEEeeccCCCccccchhhccC
Q 002154 560 LRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFI-KDIPENIEKLLHLKYLSLAHQEAIERLPEALCEL 638 (959)
Q Consensus 560 LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L 638 (959)
++.|.+.++. +.+.+|..+..+++|+.|+|++ +.+ ..+|..++.+++|++|+|++|.....+|..+++|
T Consensus 420 v~~L~L~~n~---L~g~ip~~i~~L~~L~~L~Ls~-------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIPNDISKLRHLQSINLSG-------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCC---ccccCCHHHhCCCCCCEEECCC-------CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 5666666665 3344566677777777777777 334 3667777777777777777777333677777777
Q ss_pred CCCcEEecCCCcCCcccchhhhcc-ccCCeeecCCccc
Q 002154 639 YNLERLNVSGCSHLRELPRGIGKL-RKLMYLYNAGTDS 675 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~ 675 (959)
++|++|+|++|.....+|..+..+ .++..+++.+|..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 777777777776455677766543 4556666666643
No 127
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=2e-06 Score=88.29 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred hccCCcccEEEccccCccccccccc-----cccccccccCCccEEeeccCC---Cccccchh-------hccCCCCcEEe
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIK-----DIPENIEKLLHLKYLSLAHQE---AIERLPEA-------LCELYNLERLN 645 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~-----~lp~~i~~l~~L~~L~L~~~~---~i~~lp~~-------i~~L~~L~~L~ 645 (959)
+..+..+..|+|++ +.+. .+.+.+.+.++|+.-++|+-- ....+|+. +-..++|++||
T Consensus 26 ~~~~~s~~~l~lsg-------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSG-------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hcccCceEEEeccC-------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 56778888899998 3332 234456667788888887532 01234433 33456788888
Q ss_pred cCCCcCCcccch----hhhccccCCeeecCCc
Q 002154 646 VSGCSHLRELPR----GIGKLRKLMYLYNAGT 673 (959)
Q Consensus 646 l~~~~~l~~lp~----~i~~L~~L~~L~l~~~ 673 (959)
|+.|-.-..-+. -+.++..|+||++.+|
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 887653222222 2455677777777777
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00017 Score=84.38 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=112.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++..-- ...+.. ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCC----CCCCCcccHHHHHHh
Confidence 468999999999999886432 2456789999999999999999774110 001000 001122222333332
Q ss_pred HHhCCC----CCcccccHHHH---HHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKPG----SAKELVEFQSL---MQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~~----~~~~~~~~~~~---~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
.....+ ........+.+ +..+...-..+++-++|+|++.....+.+..++..+..-...+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00011122222 222221112355668999999776666777788888765556666655543 3332
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.. ......+++.+++.++....+...+...+.... .+.+..|++.++|.+..+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 233567888999998888777765532211111 2345689999999886554433
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.9e-05 Score=56.73 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=24.5
Q ss_pred CccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccc
Q 002154 616 HLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELP 656 (959)
Q Consensus 616 ~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 656 (959)
+|++|++++|. ++.+|..+++|++|++|++++|. ++.+|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 56677777776 66676666777777777777665 55443
No 130
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.87 E-value=7.9e-05 Score=82.94 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=98.1
Q ss_pred CccccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD 235 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 235 (959)
...++.|+++.++++.+.+..+-.. +...++-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3357899999999998876432110 1234567899999999999999999984 3322 233221
Q ss_pred HHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-----------cCCchhHhhhcC---C--
Q 002154 236 EFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-----------YGKWEPFYNCLK---S-- 299 (959)
Q Consensus 236 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-- 299 (959)
..+. .... + ........+....-...+.+|+|||+..-. .+....+...+. .
T Consensus 199 -~~l~----~~~~-g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 -SELV----QKFI-G------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred -HHHh----Hhhc-c------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1111 0 011122222222133467899999985410 011112322221 1
Q ss_pred CCCCCEEEEeccchhHH-Hhh-c---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCc
Q 002154 300 SPHGSKLLITTRKETVA-LIM-G---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGL 369 (959)
Q Consensus 300 ~~~gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 369 (959)
...+..||.||...... ..+ . -...+.+++.+.++-.++|..++....- ...-++. .+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~~----~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDLE----ELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCHH----HHHHHcCCC
Confidence 12355677777653222 111 1 1357899999999999999887643221 1112333 567777664
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.85 E-value=0.00012 Score=89.08 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=85.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc---cccc-cceeEE-EEeCCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS---VKRN-FQKRIW-VCVSEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~w-v~v~~~~~~~~~ 239 (959)
..++||+.+++++++.|... ...-+.++|++|+||||+|+.+.+... +... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 46899999999999998643 234456999999999999999887411 1111 122332 22221
Q ss_pred HHHHHHHhCCCCCcccccH-HHHHHHHHHHHhcCcEEEEEeccCCCCCc-----CCch---hHhhhcCCCCCCCEEEEec
Q 002154 240 ARAIIEALKPGSAKELVEF-QSLMQHIQEYVVEGEKFLLVLDDVWNEDY-----GKWE---PFYNCLKSSPHGSKLLITT 310 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~-~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~gs~iivTt 310 (959)
+..+.. ..... +.+...+....-.+++.+|++|++..-.. ..-+ .+...+..+ .-++|-||
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaT 323 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAAT 323 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEec
Confidence 000000 01111 12222222220125789999999854210 1111 133333222 34566666
Q ss_pred cchhHHHh-------hcccceEecCCCChhhhHHHHHHh
Q 002154 311 RKETVALI-------MGSTQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 311 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
...+.... ......+.+++++.++..+++...
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 65433211 123568999999999999997544
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00033 Score=79.36 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=98.4
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
-+.+.+|-++..++|+++|.-..-...-.-.++++||++|+|||+|++.+++ ...+.| +-++++.-.|..++-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc
Confidence 3567899999999999998643221233457999999999999999999998 455556 33445554444333111
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC----CchhHhhhcCCCC-------------CCCE
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG----KWEPFYNCLKSSP-------------HGSK 305 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~-------------~gs~ 305 (959)
..+--..-...+++.+.+ .+.+.-+++||.++....+ .-..++..|.... -=|.
T Consensus 396 -------RRTYIGamPGrIiQ~mkk--a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 -------RRTYIGAMPGKIIQGMKK--AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -------cccccccCChHHHHHHHH--hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111111112344455544 3567789999998543211 1122333222110 1233
Q ss_pred EE-Eeccc-h--hHHHhhcccceEecCCCChhhhHHHHHHhh
Q 002154 306 LL-ITTRK-E--TVALIMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 306 ii-vTtr~-~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
|+ |||-+ - -.+..+....++++.+-+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 43 44433 2 223334557899999999999877776664
No 133
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.5e-06 Score=86.85 Aligned_cols=82 Identities=24% Similarity=0.220 Sum_probs=59.3
Q ss_pred CcccEEEccccCccccccccc--cccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccch--hhh
Q 002154 585 TCLRALKLEVRQPWWCQNFIK--DIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPR--GIG 660 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~ 660 (959)
..|++|||+. ..++ .+...+..+.+|+.|+|.|+..-..+...|.+-.+|+.|||+.|..+++... -+.
T Consensus 185 sRlq~lDLS~-------s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSN-------SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcch-------hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 3688899998 4443 3445567788899999988873335556777888899999998887766432 356
Q ss_pred ccccCCeeecCCc
Q 002154 661 KLRKLMYLYNAGT 673 (959)
Q Consensus 661 ~L~~L~~L~l~~~ 673 (959)
+++.|..|+++.|
T Consensus 258 scs~L~~LNlsWc 270 (419)
T KOG2120|consen 258 SCSRLDELNLSWC 270 (419)
T ss_pred hhhhHhhcCchHh
Confidence 7778888888877
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00019 Score=72.12 Aligned_cols=181 Identities=20% Similarity=0.222 Sum_probs=100.3
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+|+|.++-++++.=++..... .++.+--|.++|++|.||||||.-+.+. ....+. ++-.....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 4799998888877666654432 4566788999999999999999999984 333332 11111111111112222
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCC--------CCCCCEE----------
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKS--------SPHGSKL---------- 306 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~i---------- 306 (959)
..+. +.=++.+|.+..-....-+-+..++.+ .++++|.
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2222 222344455543322111111111111 1223332
Q ss_pred -EEeccchhHHHhhcc--cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 307 -LITTRKETVALIMGS--TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 307 -ivTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
=.|||.-.+...+.. .-+.+++--+.+|-.++..+.+..-.- +--.+.+.+|+++..|-|.-+.-+-+..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 248886444332222 346788888999999998887643221 2224556689999999997555444433
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00037 Score=80.65 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=112.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-+..++.+..++... .-...+.++|+.|+||||+|+.+.+..--...... ..+... ...+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHH
Confidence 47899999999999998643 24567889999999999999998774110000000 000000 0011111
Q ss_pred HHhCC------CC-CcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH
Q 002154 245 EALKP------GS-AKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA 316 (959)
Q Consensus 245 ~~l~~------~~-~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 316 (959)
..-.. +. .....+..++...+......+++-++|+|++...+..++..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 00 0111112222222222213456678999999776666677788777765666777666643 3332
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
.. ......+++.+++.++....+.+.+...+-. --.+.+..|++.++|.+..+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2335578999999999888888766432211 12344557899999988644433
No 136
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.83 E-value=0.00083 Score=70.41 Aligned_cols=170 Identities=17% Similarity=0.226 Sum_probs=107.0
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.++.+.+|+.++..+...+...+ ..-+..|.|+|-+|.|||.+.+.+.+.. .. ..+|+++-+.++.+.++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHH
Confidence 35678999999999999885432 1345677999999999999999999964 22 2489999999999999999
Q ss_pred HHHHhCCCCCcc-c-----ccHHHHHHHHHHHH-h--cCcEEEEEeccCCCCCcCCchh-Hhhhc---CC-CCCCCEEEE
Q 002154 243 IIEALKPGSAKE-L-----VEFQSLMQHIQEYV-V--EGEKFLLVLDDVWNEDYGKWEP-FYNCL---KS-SPHGSKLLI 308 (959)
Q Consensus 243 i~~~l~~~~~~~-~-----~~~~~~~~~l~~~~-l--~~k~~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iiv 308 (959)
|+.+........ . .+.......+.++- . +++.++||||++..- .+.+. +...+ .. .....-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEE
Confidence 999985111111 1 22223344444420 1 246899999998432 22222 11111 11 122233444
Q ss_pred eccchhHHHh---hccc--ceEecCCCChhhhHHHHHHh
Q 002154 309 TTRKETVALI---MGST--QVISVNELSEMECWSVFESL 342 (959)
Q Consensus 309 Ttr~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~ 342 (959)
++........ +++. .++..+.-+.+|...++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4443222222 3443 35667888999999988764
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.83 E-value=5.5e-05 Score=76.73 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=116.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeE-EEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRI-WVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~v~~~~~~~~~~~~i 243 (959)
.+++|.+..++.+.+.+.. ........+|++|.|||+-|..++...--..-|.+++ =.++|...... +.++-
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 4689999999999999864 3578899999999999999988776422234455544 23444332221 11110
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHH-HhcCcE-EEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHHHh-h
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEY-VVEGEK-FLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVALI-M 319 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~ 319 (959)
.. +.+.+....... .-.-++ -.+|||++.....+.|..++..+......++.|+.+.. ..+... .
T Consensus 109 ik-----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 IK-----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred hc-----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00 011110000000 001123 48899999998899999999999887777776655543 222222 2
Q ss_pred cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHH
Q 002154 320 GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTI 376 (959)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 376 (959)
.....+..++|.+++..+-+...+-..+-..+. +..+.|++.++|.-. |+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 234578899999999988888776543332333 344589999999544 44333
No 138
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00022 Score=76.97 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=67.6
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HH-HhhcccceEecCCCChhhhHHHHHHhhccCCCC
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VA-LIMGSTQVISVNELSEMECWSVFESLAFFGKSM 349 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 349 (959)
+++-++|+|++...+......+...+..-..++.+|+||.+.. +. ...+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4455567799988888888888888887666787888887643 22 22233568999999999999888765310
Q ss_pred CCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 350 QERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 350 ~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
. . .+.+..++..++|.|..+..+
T Consensus 181 ~-~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S-D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 223346788999999866544
No 139
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.80 E-value=0.00067 Score=81.76 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=90.5
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
+.+.+|.++.+++|++++............++.++|++|+||||+|+.++.. ....|- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999999886422111224457999999999999999999973 333332 23333333332222111
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCC----chhHhhhcCCC---------------CCCC
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGK----WEPFYNCLKSS---------------PHGS 304 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs 304 (959)
....+ .....+.+.+... ....-+++||++....... ...+...+... -.+.
T Consensus 396 ~~~~g-------~~~G~~~~~l~~~--~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIG-------SMPGKLIQKMAKV--GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCC-------CCCcHHHHHHHhc--CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 00111 1112233333332 2234478899985533221 23444444321 1233
Q ss_pred EEEEeccchhHHHh-hcccceEecCCCChhhhHHHHHHhh
Q 002154 305 KLLITTRKETVALI-MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 305 ~iivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
-+|.|+.+..+... .+....+.+.++++++-.++..++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 34445544332222 2335678889999888877777654
No 140
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.79 E-value=0.001 Score=68.88 Aligned_cols=197 Identities=18% Similarity=0.133 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 172 KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK----RNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 172 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
+.++++.+.+..+ ...+..-+.|||.+|.|||++++++.+.-... ..--.++.|.....++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3456666666544 34566779999999999999999998631111 1111466777888899999999999999
Q ss_pred CCCCCcccccHHHHHHHHHHHHhc-CcEEEEEeccCCCCC---cCCchhHhhhcCC---CCCCCEEEEeccchhHHHh--
Q 002154 248 KPGSAKELVEFQSLMQHIQEYVVE-GEKFLLVLDDVWNED---YGKWEPFYNCLKS---SPHGSKLLITTRKETVALI-- 318 (959)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~l~-~k~~LlVlDdv~~~~---~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~-- 318 (959)
+.. .........+....... ++ -+--+||+|++.+-- ...-..+...+.. .-.-+-|.+-|+..--+-.
T Consensus 121 gaP-~~~~~~~~~~~~~~~~l-lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 121 GAP-YRPRDRVAKLEQQVLRL-LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred Ccc-cCCCCCHHHHHHHHHHH-HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 833 32233334444333333 32 245588999996521 1122233333332 2233445565554222211
Q ss_pred ---hcccceEecCCCChhh-hHHHHHHhh--ccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 319 ---MGSTQVISVNELSEME-CWSVFESLA--FFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 319 ---~~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
.+-..++.++....++ ...|+.... ..-.. ...-...++++.|...++|+.=-+.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1224567777766554 444443321 11111 1122346788999999999875443
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00041 Score=81.11 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=111.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+...+.|.+++... .-...+.++|+.|+||||+|+.+.+..--....+ ..++..-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 47999999999999988543 2346678999999999999988876311000000 00111111111111
Q ss_pred HHhCC-------CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chhHH
Q 002154 245 EALKP-------GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KETVA 316 (959)
Q Consensus 245 ~~l~~-------~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 316 (959)
..-.. .......+.+.+...+...-..+++-++|+|++...+......+...+......+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 10000 00011112223333322221335566899999977666667778877776666666665554 33333
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch-hHHHHHHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP-LAAKTIASL 379 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~~ 379 (959)
.. ......+++.+++.++....+...+...+... -.+....|++.++|.. .|+..+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 23356888999999998887776553222111 1344557899999966 455554443
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.78 E-value=0.00033 Score=74.30 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=73.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCc
Q 002154 194 IISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGE 273 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k 273 (959)
-+.++|++|+||||+|+.+++.....+......|+.++. .+ ++..+. +.. .......+.+. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~-g~~-----~~~~~~~~~~a----~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYI-GHT-----APKTKEILKRA----M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhc-ccc-----hHHHHHHHHHc----c
Confidence 588999999999999977765311111111123454442 12 222222 111 11222223322 2
Q ss_pred EEEEEeccCCCC---------CcCCchhHhhhcCCCCCCCEEEEeccchhHHHhhc--------ccceEecCCCChhhhH
Q 002154 274 KFLLVLDDVWNE---------DYGKWEPFYNCLKSSPHGSKLLITTRKETVALIMG--------STQVISVNELSEMECW 336 (959)
Q Consensus 274 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~ 336 (959)
.-+|+||++..- ..+.+..+...+.....+.+||+++.......... -...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358899999521 11123445555655555667777776443322211 1357899999999999
Q ss_pred HHHHHhhc
Q 002154 337 SVFESLAF 344 (959)
Q Consensus 337 ~lf~~~~~ 344 (959)
.++.+.+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99888764
No 143
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00022 Score=75.14 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=81.8
Q ss_pred ccccchhHHHHHHHHHhcc---------CCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 002154 166 EIFGRQKEKNELVNRLLCE---------SSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDE 236 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~---------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 236 (959)
.++|.+..+++|.+..... .-...+....+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788887776665432111 001123456788999999999999999976311001111112333322
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC--------cCCchhHhhhcCCCCCCCEEEE
Q 002154 237 FRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED--------YGKWEPFYNCLKSSPHGSKLLI 308 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiv 308 (959)
.++... .++ . ....+...+... ..-+|++|++..-. .+..+.+...+........+|+
T Consensus 83 ~~l~~~---~~g--~-----~~~~~~~~~~~a----~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 ADLVGE---YIG--H-----TAQKTREVIKKA----LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred HHhhhh---hcc--c-----hHHHHHHHHHhc----cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 111111 010 0 111222223222 23488999996421 1122334444444433445566
Q ss_pred eccchhHHH-------hhcc-cceEecCCCChhhhHHHHHHhhc
Q 002154 309 TTRKETVAL-------IMGS-TQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 309 Ttr~~~v~~-------~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
++....... .... ...+.+++++.++-.+++.+.+.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 654432211 1111 24688999999999999987764
No 144
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0024 Score=63.69 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeC-CCCCHHHHHHHHHHHhCCCCCccc-ccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVS-EPFDEFRIARAIIEALKPGSAKEL-VEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~ 268 (959)
+.+++.++|.-|.|||.+.+..... .. . +.++=|.+. ...+...+...|+..+........ ...++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~-~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN-E-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC-C-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 5679999999999999999944431 11 1 112224443 345677888888888873221111 1233444555555
Q ss_pred HhcCcE-EEEEeccCCCCCcCCchhHhhhcCCCCCCC---EEEEeccc--------hhHHHhhcccce-EecCCCChhhh
Q 002154 269 VVEGEK-FLLVLDDVWNEDYGKWEPFYNCLKSSPHGS---KLLITTRK--------ETVALIMGSTQV-ISVNELSEMEC 335 (959)
Q Consensus 269 ~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtr~--------~~v~~~~~~~~~-~~l~~L~~~~~ 335 (959)
.-+++| ..+++||.........+.++-.......++ +|+..-.- ......-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 456788 999999997665555555544332221122 23332211 111111111234 99999999999
Q ss_pred HHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHH
Q 002154 336 WSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASL 379 (959)
Q Consensus 336 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 379 (959)
..++..+..+.....+- --.+....|..+..|.|.++..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHH
Confidence 99998887665432221 12344457999999999999877753
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0007 Score=78.77 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=110.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.+...+.+.+++.... -...+.++|+.|+||||+|+.+.+..--...- ...+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 479999999999999986432 35677889999999999998886531000000 001111111122221
Q ss_pred HHhCCC-------CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc-chhHH
Q 002154 245 EALKPG-------SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR-KETVA 316 (959)
Q Consensus 245 ~~l~~~-------~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 316 (959)
.....+ ..........+...+...-..+++-++|+|++.......+..+...+........+|++|. ...+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111000 0011111223333322221346677889999976666667777777766555555555553 33322
Q ss_pred Hh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 317 LI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 317 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
.. ......+++.+++.++....+...+...+-... .+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 21 233567889999999988888776642221111 2445578889988776443
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.00028 Score=85.43 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc---cccccc-ceeEEEEeCCCCCHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND---SVKRNF-QKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~~~~ 241 (959)
.++||+++++++++.|... ...-+.++|++|+|||++|+.+++.. .+...+ ...+|.. + ..
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~---- 247 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MG---- 247 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HH----
Confidence 6899999999999988543 23345799999999999999988742 111111 2334321 1 11
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC---------cCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED---------YGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
.+... .. ...+.+...+.+.+.+-+.++.+|++|++..-. .+.-+.+...+..+ .-++|-+|..
T Consensus 248 ~l~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 248 SLLAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred HHhhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 11110 00 001222222222222123467899999985311 11112233333321 2345555544
Q ss_pred hhHHHh-------hcccceEecCCCChhhhHHHHHHhh
Q 002154 313 ETVALI-------MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 313 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
.+.... ......+.+.+++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 1235689999999999999998654
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.00093 Score=75.43 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=91.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNF--QKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
...+.|+|+.|+|||+|++.+++. ..... ..+++++. .++...+...+... ..+.. .+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~----~~~- 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEF----KEK- 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHH----HHH-
Confidence 456899999999999999999985 33322 23456643 34455555555411 12222 222
Q ss_pred hcCcEEEEEeccCCCCCcC-Cc-hhHhhhcCCC-CCCCEEEEeccch-h--------HHHhhcccceEecCCCChhhhHH
Q 002154 270 VEGEKFLLVLDDVWNEDYG-KW-EPFYNCLKSS-PHGSKLLITTRKE-T--------VALIMGSTQVISVNELSEMECWS 337 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~ 337 (959)
+++ .-+|||||+...... .+ +.+...+... ..|..+|+|+... . +...+.....+.+.+.+.++-..
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 222 338899999643211 11 2233333221 2355688887642 1 11112223578999999999999
Q ss_pred HHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 338 VFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 338 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
++.+.+..... . --+++...|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~-~---l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGL-E---LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCC-C---CCHHHHHHHHHhcCCCHHHHH
Confidence 99988754221 1 124556678888888766443
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.65 E-value=0.0012 Score=66.78 Aligned_cols=135 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
+.+.|+|+.|+|||+|++.+++... . .++. ..+. . + .. .+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~------------~----------~-------~~-~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF------------N----------E-------EI-LE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh------------c----------h-------hH-Hh-
Confidence 6789999999999999999887532 1 1111 0000 0 0 00 11
Q ss_pred cEEEEEeccCCCCCcCCchhHhhhcCC-CCCCCEEEEeccchh-------HHHhhcccceEecCCCChhhhHHHHHHhhc
Q 002154 273 EKFLLVLDDVWNEDYGKWEPFYNCLKS-SPHGSKLLITTRKET-------VALIMGSTQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
..-+|++||+..-.. ..+...+.. ...|..||+|++... ....+...-.+++++++.++-..++.+.+.
T Consensus 85 ~~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 KYNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cCCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234688899952211 122222211 134668999987532 222234455899999999998888877764
Q ss_pred cCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 345 FGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 345 ~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
.. .-. --+++..-|++.+.|.--.+.
T Consensus 162 ~~-~l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 162 IS-SVT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred Hc-CCC---CCHHHHHHHHHHccCCHHHHH
Confidence 21 111 224555678888877655443
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.64 E-value=0.00076 Score=76.33 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=91.3
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc---ccceeEEEEeCCCC
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR---NFQKRIWVCVSEPF 234 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~~~~ 234 (959)
.++.|.+..+++|.+.+..+-. .+-...+-+.++|++|+|||++|+.+++...... .+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999999887643210 0122356689999999999999999998522110 0122345554431
Q ss_pred CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-------cCCc-----hhHhhhcCCC--
Q 002154 235 DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-------YGKW-----EPFYNCLKSS-- 300 (959)
Q Consensus 235 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~-- 300 (959)
+++ .... + ........+....+.....+++.+|+||+++..- .... ..+...+...
T Consensus 261 ---eLl----~kyv-G--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---ELL----NKYV-G--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---hhc----cccc-c--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111 1100 0 0011122233333332234578999999995310 0111 1233333322
Q ss_pred CCCCEEEEeccchhHHH-hh-c--c-cceEecCCCChhhhHHHHHHhh
Q 002154 301 PHGSKLLITTRKETVAL-IM-G--S-TQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 301 ~~gs~iivTtr~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
..+..||.||....... .+ . . ...++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445566665433221 11 1 1 4468999999999999999876
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00079 Score=72.23 Aligned_cols=200 Identities=15% Similarity=0.143 Sum_probs=114.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc---cc----------ccccceeEEEEeC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND---SV----------KRNFQKRIWVCVS 231 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~----------~~~F~~~~wv~v~ 231 (959)
.+++|.+..++.+...+.... -.....++|+.|+||+++|..+.+.. .. ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999885432 35789999999999999996665421 00 1111222344211
Q ss_pred CCCCHHHHHHHHHHHhC-CCCCcccccH---HHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEE
Q 002154 232 EPFDEFRIARAIIEALK-PGSAKELVEF---QSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLL 307 (959)
Q Consensus 232 ~~~~~~~~~~~i~~~l~-~~~~~~~~~~---~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 307 (959)
...+-..+-..-++..+ .......... +.+.+.+...-..+++-++|+|++...+..+...++..+..-+ .+.+|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000000000111111 0011112222 3333333333244677799999997777777777888887655 45566
Q ss_pred Eeccc-hhHHH-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 308 ITTRK-ETVAL-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 308 vTtr~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
++|.+ ..+.. .......+++.++++++..+.+.+..... .... ....++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~~~----~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---ILNI----NFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cchh----HHHHHHHHcCCCHHHHHHHH
Confidence 55544 33222 22346789999999999999998764211 1011 12478999999997665433
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0014 Score=73.93 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=86.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.|+|+.|+|||+|++.+++. +...-..+++++ ...+...+...+..+ .. ..++.. .+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~-~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQF-YR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHH-cc
Confidence 456889999999999999999984 322223344554 234555555555311 11 223332 32
Q ss_pred CcEEEEEeccCCCCCcCCc--hhHhhhcCC-CCCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHHHH
Q 002154 272 GEKFLLVLDDVWNEDYGKW--EPFYNCLKS-SPHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 339 (959)
..-+|++||+.......+ +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 344888899855322111 223332221 12355688888542 11222333468899999999999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhcCCc
Q 002154 340 ESLAFFGKSMQERENLEKIGWEIVRKCKGL 369 (959)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 369 (959)
.+++....- ..+ .++..-|++.+.|.
T Consensus 281 ~~k~~~~~~-~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI-RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCC
Confidence 887744221 112 33444566666543
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.0004 Score=85.19 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=84.8
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc---ccccc-ceeEEEEeCCCCCHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS---VKRNF-QKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~~~~ 241 (959)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++..-. +.... +..+|. + +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH--
Confidence 5899999999999999643 233456999999999999998877421 11111 234443 1 11111
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-----cC--Cchh-HhhhcCCCCCCCEEEEeccch
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-----YG--KWEP-FYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-----~~--~~~~-l~~~l~~~~~gs~iivTtr~~ 313 (959)
+. +... ..+.+...+.+.+.+...++.+|++|++..-. .. .... +...+..+ .-++|.+|...
T Consensus 247 -----~a-g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 247 -----LA-GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -----hc-cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 11 1111 11222222233332134568999999984210 01 1122 22223221 34566666655
Q ss_pred hHHHh-------hcccceEecCCCChhhhHHHHHH
Q 002154 314 TVALI-------MGSTQVISVNELSEMECWSVFES 341 (959)
Q Consensus 314 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 341 (959)
..... ......+.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 44221 22356788888888888887764
No 153
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0013 Score=74.16 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=95.3
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
-+.+.+|.++-+++|++++.-..-.+.-+-++++.+|++|||||.+|+.++.. ..+.| +-++|+.-.|..+|-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 35678999999999999986443323456789999999999999999999983 44444 23455555554433111
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc----CCchhHhhhcCCC-------------CCCCE
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY----GKWEPFYNCLKSS-------------PHGSK 305 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~ 305 (959)
....-..-...+++.++.. +-..-|+.+|.|+.-.. +.-..++..|... -.=|+
T Consensus 484 -------RRTYVGAMPGkiIq~LK~v--~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 -------RRTYVGAMPGKIIQCLKKV--KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred -------ceeeeccCChHHHHHHHhh--CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 1111111223455555553 45667888999854110 0111233222211 12366
Q ss_pred EEEeccchhHH----HhhcccceEecCCCChhhhHHHHHHhh
Q 002154 306 LLITTRKETVA----LIMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 306 iivTtr~~~v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
|++...-..+. ........|++.+-..+|-..+-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66433221111 112335678888888877666655554
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0027 Score=72.98 Aligned_cols=157 Identities=11% Similarity=0.132 Sum_probs=91.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNF--QKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++..++...+..+ ..+ .+++. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~----~f~~~-y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGD----SFRRR-Y 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHH----HHHHH-h
Confidence 45899999999999999999984 33222 23445553 34555555554311 111 22222 2
Q ss_pred cCcEEEEEeccCCCCCc-CCch-hHhhhcCCC-CCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHHH
Q 002154 271 EGEKFLLVLDDVWNEDY-GKWE-PFYNCLKSS-PHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 338 (959)
+ +.=+|||||+..... +.|. .+...+... ..|..|||||+.. .+...+...-++.+.+.+.+.-..+
T Consensus 376 ~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 R-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred h-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 234788999965321 2232 233333221 3356688888762 2223344566899999999999999
Q ss_pred HHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 339 FESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
+.+++....- . --.++..-|++++.+..-.+
T Consensus 455 L~kka~~r~l-~---l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQL-N---APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCC-C---CCHHHHHHHHHhccCCHHHH
Confidence 9988753221 1 12455556777776654444
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0043 Score=67.70 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
....+.|+|..|.|||.|++.+.+. ...+......++++ .+....+++..+. . .-...+++. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~-~---------~~~~~Fk~~-y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALR-D---------NEMEKFKEK-Y 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHH-h---------hhHHHHHHh-h
Confidence 5788999999999999999999994 44444433333332 3445555555554 1 122334444 3
Q ss_pred cCcEEEEEeccCCCCC-cCCch-hHhhhcCCC-CCCCEEEEeccc---------hhHHHhhcccceEecCCCChhhhHHH
Q 002154 271 EGEKFLLVLDDVWNED-YGKWE-PFYNCLKSS-PHGSKLLITTRK---------ETVALIMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 338 (959)
.-=++++||++.-. .+.|+ .+...+..- ..|..||+|++. +.....+...-++.+.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33488899996521 11222 233333221 234489999965 23344455667899999999999999
Q ss_pred HHHhhccCC
Q 002154 339 FESLAFFGK 347 (959)
Q Consensus 339 f~~~~~~~~ 347 (959)
+.+++....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 998765433
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=6.7e-05 Score=53.85 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=34.7
Q ss_pred CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE 633 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~ 633 (959)
++|++|++++ +.+..+|..+++|++|++|++++|. ++++|.
T Consensus 1 ~~L~~L~l~~-------N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-------NQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETS-------SS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccC-------CCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 4789999999 7889999889999999999999998 887764
No 157
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=9.4e-05 Score=80.16 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=50.9
Q ss_pred hCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCc
Q 002154 778 ALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGN 850 (959)
Q Consensus 778 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~ 850 (959)
.+..+.+++.|++++|.... + |. -.++|+.|.+++|..++.+|.. -.++|+.|.+++|..+..+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~s--L-P~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES--L-PV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc--c-CC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccc
Confidence 34455889999999997766 6 52 3457999999999988888742 136899999999977766654
No 158
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.60 E-value=0.001 Score=81.07 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=85.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.++.+++|.+++............++.++|++|+|||++|+.+.+. ....|- -++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458899999999998765321111223458999999999999999999984 333332 2223332232222110
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCC----chhHhhhcCC--------C-------CCCCE
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGK----WEPFYNCLKS--------S-------PHGSK 305 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~ 305 (959)
...........+.+.+... . .++-+|+||++....... ...+...+.. . ..+..
T Consensus 393 -----~~~~~g~~~g~i~~~l~~~-~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 393 -----RRTYVGAMPGRIIQGLKKA-K-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred -----CCceeCCCCchHHHHHHHh-C-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0000011112233334333 2 233478999985532211 1223332221 0 01233
Q ss_pred EEEeccchh-HHH-hhcccceEecCCCChhhhHHHHHHhh
Q 002154 306 LLITTRKET-VAL-IMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 306 iivTtr~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
+|.||.... +.. .......+.+.+++.++-.+++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 444554421 111 12334578889999888777776543
No 159
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00063 Score=76.91 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=93.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccc-cc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRN-FQ-KRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
..-+.|+|+.|+|||+||+.+++. .... .. .++|++. .+++.++...+..+ ..+. +.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~- 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREK- 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHH-
Confidence 445999999999999999999984 3332 33 3456654 35666666666411 1122 2222
Q ss_pred hcCcEEEEEeccCCCCC-cCCc-hhHhhhcCC-CCCCCEEEEeccc-hhH--------HHhhcccceEecCCCChhhhHH
Q 002154 270 VEGEKFLLVLDDVWNED-YGKW-EPFYNCLKS-SPHGSKLLITTRK-ETV--------ALIMGSTQVISVNELSEMECWS 337 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr~-~~v--------~~~~~~~~~~~l~~L~~~~~~~ 337 (959)
.+.+.-+|++||+.... ...+ +.+...+.. ...|..||+||.. ..- ...+...-.+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33345589999996421 1112 223333221 1234568888853 211 1112334578999999999999
Q ss_pred HHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 338 VFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 338 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
++.+.+....- .. -.++..-|++.+.|..-.+
T Consensus 271 IL~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 271 IARKMLEIEHG-EL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHhcCC-CC---CHHHHHHHHhccccCHHHH
Confidence 99888743221 11 2455667888888765544
No 160
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.57 E-value=0.00088 Score=76.58 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=93.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF--QKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
....+.|+|+.|+|||+|++.+++. ....+ ..+++++.. ++...+...+... ..+. +.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~----~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TMEE----FKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cHHH----HHHH
Confidence 3456899999999999999999985 43333 234466543 3444555554311 1122 2222
Q ss_pred HhcCcEEEEEeccCCCCCcCC-c-hhHhhhcCC-CCCCCEEEEeccchh---------HHHhhcccceEecCCCChhhhH
Q 002154 269 VVEGEKFLLVLDDVWNEDYGK-W-EPFYNCLKS-SPHGSKLLITTRKET---------VALIMGSTQVISVNELSEMECW 336 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~ 336 (959)
++ +.-+|||||+....... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++-.
T Consensus 209 -~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 209 -YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred -Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 33 24489999995422111 1 223332221 123455888876531 1222333457999999999999
Q ss_pred HHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHH
Q 002154 337 SVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAK 374 (959)
Q Consensus 337 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 374 (959)
.++.+.+.... ..--.++..-|++.+.|..-.+.
T Consensus 287 ~il~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEG----IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHH
Confidence 99999875321 11223556678898888776443
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=0.0002 Score=66.73 Aligned_cols=21 Identities=48% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~ 215 (959)
|.|+|+.|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999995
No 162
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=2.1e-05 Score=88.98 Aligned_cols=102 Identities=29% Similarity=0.415 Sum_probs=60.5
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIG 660 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 660 (959)
+..+++|..|++.+ +.+..+...+..+++|++|+|++|. |+.+.. +..+..|+.|++.+|. +..++ ++.
T Consensus 91 l~~~~~l~~l~l~~-------n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-------NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccc-------cchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCc
Confidence 45666777777776 5566664446667777777777776 666654 5666667777777765 55542 344
Q ss_pred ccccCCeeecCCccccccCCcc-CcCCCCCCccCc
Q 002154 661 KLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRK 694 (959)
Q Consensus 661 ~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 694 (959)
.+++|+.+++++| .+..+... ...+.++..+.+
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIENDELSELISLEELDL 193 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhhhhhhccchHHHhc
Confidence 4666777777666 33333321 244444444443
No 163
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=1.5e-05 Score=90.31 Aligned_cols=212 Identities=27% Similarity=0.331 Sum_probs=125.7
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKL 662 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 662 (959)
.+..+..+++.. +.+..+-..++.+.+|++|++.+|. ++.+...+..+++|++|++++|. ++.+ .++..|
T Consensus 70 ~l~~l~~l~l~~-------n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-------NLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTL 139 (414)
T ss_pred HhHhHHhhccch-------hhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccc-cchhhc
Confidence 345556666766 6666655568889999999999999 88887768899999999999987 8877 467888
Q ss_pred ccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccc--cccCCCCCCceEeCCCCCCChhhhHhhcccC
Q 002154 663 RKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGS--LKKLNLLRQCSIDGLGGVSDAGEARRAELEK 740 (959)
Q Consensus 663 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~--L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 740 (959)
+.|+.|++.+| .+..+ .++..+++|+.+++..+.... +.. +..+..|+.+.+.+..... ...+..
T Consensus 140 ~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i~~------i~~~~~ 206 (414)
T KOG0531|consen 140 TLLKELNLSGN-LISDI-SGLESLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSIRE------IEGLDL 206 (414)
T ss_pred cchhhheeccC-cchhc-cCCccchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCchhc------ccchHH
Confidence 88999999998 45444 345557777777665544332 222 3555566655554421100 001111
Q ss_pred CCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCC--CCceEEEeeeCCCCCCCCcChhhcccccceeeecC
Q 002154 741 KKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPP--NLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNW 818 (959)
Q Consensus 741 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 818 (959)
...+..+++..+.. ..+..+.... +|+.+.+.++.... . +..+..+.++..|++.+
T Consensus 207 ~~~l~~~~l~~n~i-------------------~~~~~l~~~~~~~L~~l~l~~n~i~~--~-~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKI-------------------SKLEGLNELVMLHLRELYLSGNRISR--S-PEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHhhcccccc-------------------eeccCcccchhHHHHHHhcccCcccc--c-cccccccccccccchhh
Confidence 12222223322220 0111222222 26777777777665 2 24445667777777776
Q ss_pred ccCCCcCCCCCCcCCCcceeec
Q 002154 819 WRNCEHLPPLGKLPSLEDLWIQ 840 (959)
Q Consensus 819 ~~~~~~l~~l~~l~~L~~L~l~ 840 (959)
+ ....+..+...+.+..+...
T Consensus 265 n-~~~~~~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 265 N-RISNLEGLERLPKLSELWLN 285 (414)
T ss_pred c-cccccccccccchHHHhccC
Confidence 6 33333333444444444443
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.42 E-value=0.0012 Score=73.53 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=96.4
Q ss_pred cccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|.+..+++|.+.+..+-.. +-...+.|.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789999999988877422110 1234566889999999999999999984 33344 2222111
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC--------cCC------chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED--------YGK------WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~ 301 (959)
+.. ... +. ....+...+... ..+.+.+|+||++.... ... .-.+...+.. ..
T Consensus 253 -L~~----k~~-Ge-----~~~~vr~lF~~A-~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -LIQ----KYL-GD-----GPKLVRELFRVA-EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -hhh----hhc-ch-----HHHHHHHHHHHH-HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111 111 00 011122222222 45678899999974210 000 1112222211 12
Q ss_pred CCCEEEEeccchhHHHh-h----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETVALI-M----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+.+||+||........ + .-...+.+.+.+.++-.++|..++....- ....++. .++..+.|.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dvdl~----~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDVDLE----EFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCcCHH----HHHHhcCCCC
Confidence 35678888876433322 1 11457899999999999999876532211 1222344 4565665543
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.42 E-value=0.0014 Score=63.76 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=36.3
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.++||-++.++++.-.-. +++..-+.|.||+|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 3579999988888776653 45678889999999999998777766
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=8.2e-05 Score=87.89 Aligned_cols=135 Identities=21% Similarity=0.113 Sum_probs=74.4
Q ss_pred CCccEEeeccCCCcc-ccchhhc-cCCCCcEEecCCCcCC-cccchhhhccccCCeeecCCccccccCCccCcCCCCCCc
Q 002154 615 LHLKYLSLAHQEAIE-RLPEALC-ELYNLERLNVSGCSHL-RELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRS 691 (959)
Q Consensus 615 ~~L~~L~L~~~~~i~-~lp~~i~-~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 691 (959)
.+|++|+++|...+. .=|..++ .||+|++|.+.+-... ..+-.-..++++|+.|+++++ ++..+ .|+++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 356666666543221 1122232 4667777776652211 112222345677777777776 44444 56777777777
Q ss_pred cCceeecCccCCCCCccccccCCCCCCceEeCCCCCCC--hhhhHhhcccCCCCCCceEEeecC
Q 002154 692 VRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSD--AGEARRAELEKKKNLFDLDLHFGH 753 (959)
Q Consensus 692 L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~ 753 (959)
|.+....... ...+.+|-+|++|+.|+|+.-..... ........-..+++|+.|+.+...
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7776665554 44566677777777777765332221 122223344457788888887554
No 167
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0024 Score=71.13 Aligned_cols=147 Identities=23% Similarity=0.257 Sum_probs=87.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCc
Q 002154 194 IISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGE 273 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k 273 (959)
++.|+|+-++||||+++.+... ..+. .+++...+......-+.+ ....+... -..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------------------~~~~~~~~-~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------------------LLRAYIEL-KERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH------------------HHHHHHHh-hccC
Confidence 9999999999999999777663 2122 555554332111111111 11122222 1226
Q ss_pred EEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHH-----Hh-hcccceEecCCCChhhhHHHHHHhhccCC
Q 002154 274 KFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVA-----LI-MGSTQVISVNELSEMECWSVFESLAFFGK 347 (959)
Q Consensus 274 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-----~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 347 (959)
+..|+||.|.. ...|......+.+.++. +|++|+.+.... .. .|....+++.||+..|...+-...+
T Consensus 95 ~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 95 KSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred CceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 78999999965 46798888888776655 888888774332 22 2346689999999998876543100
Q ss_pred CCCCCchHHHHHHHHHHhcCCchhHHHH
Q 002154 348 SMQERENLEKIGWEIVRKCKGLPLAAKT 375 (959)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~c~G~Plai~~ 375 (959)
...... ..-+=.-..||.|.++..
T Consensus 168 ---~~~~~~-~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 ---EPSKLE-LLFEKYLETGGFPESVKA 191 (398)
T ss_pred ---chhHHH-HHHHHHHHhCCCcHHHhC
Confidence 000111 122334467899987754
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.00054 Score=71.89 Aligned_cols=103 Identities=26% Similarity=0.300 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
..+.++|..|+|||.||..+++. ....-..++++++ .+++..+..... .. ......... +. +.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~-~~--~~~~~~~~~----~~-l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYK-SS--GKEDENEII----RS-LVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHh-cc--ccccHHHHH----HH-hcC
Confidence 45889999999999999999995 3222334556653 345555555543 11 111122222 22 332
Q ss_pred cEEEEEeccCCCCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 273 EKFLLVLDDVWNEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
-. ||||||+.......|.. +...+... ..+..+|+||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33 89999996544445543 33333321 345679999974
No 169
>PRK10536 hypothetical protein; Provisional
Probab=97.34 E-value=0.0033 Score=63.91 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=74.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE--e--CC-----CCC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC--V--SE-----PFD 235 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--v--~~-----~~~ 235 (959)
..+.+|......+.+++.. ..+|.++|++|.|||+||..+..+.-..+.|+.++-+. + .+ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4577888999999998852 24999999999999999988776422233454333221 1 11 111
Q ss_pred HHH----HHHHHHHHhCCCCCcccccHHHHHH-------H-HHHHHhcCcEE---EEEeccCCCCCcCCchhHhhhcCCC
Q 002154 236 EFR----IARAIIEALKPGSAKELVEFQSLMQ-------H-IQEYVVEGEKF---LLVLDDVWNEDYGKWEPFYNCLKSS 300 (959)
Q Consensus 236 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~~-------~-l~~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (959)
..+ .++-+.+.+..-. .....+.+.. . =..+ ++|..+ +||+|++.+.+.. .+...+...
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~y-mRGrtl~~~~vIvDEaqn~~~~---~~k~~ltR~ 200 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAY-MRGRTFENAVVILDEAQNVTAA---QMKMFLTRL 200 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHH-hcCCcccCCEEEEechhcCCHH---HHHHHHhhc
Confidence 111 1222222221000 0000111100 0 0112 566655 9999999876653 344445555
Q ss_pred CCCCEEEEeccch
Q 002154 301 PHGSKLLITTRKE 313 (959)
Q Consensus 301 ~~gs~iivTtr~~ 313 (959)
+.+|++|+|--..
T Consensus 201 g~~sk~v~~GD~~ 213 (262)
T PRK10536 201 GENVTVIVNGDIT 213 (262)
T ss_pred CCCCEEEEeCChh
Confidence 6899999987543
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.00022 Score=77.35 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=41.7
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRG 658 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 658 (959)
+..+.+++.|++++ +.+..+|. --.+|+.|.+++|..++.+|..+. .+|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~-------c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKD-------CDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCC-------CCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 44456777777777 34666662 123577777777666677776543 46777777777666666654
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0017 Score=80.12 Aligned_cols=156 Identities=20% Similarity=0.195 Sum_probs=82.5
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc---c-cceeEEEEeCCCCCHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR---N-FQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~v~~~~~~~~~~~ 241 (959)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+.....-.. . ....+|.. +...++
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh-
Confidence 5999999999999999643 234456899999999999998877411110 0 12233321 111111
Q ss_pred HHHHHhCCCCCcccccHH-HHHHHHHHHHhcCcEEEEEeccCCCCC-----cCCchhHhhhcCC-CCCC-CEEEEeccch
Q 002154 242 AIIEALKPGSAKELVEFQ-SLMQHIQEYVVEGEKFLLVLDDVWNED-----YGKWEPFYNCLKS-SPHG-SKLLITTRKE 313 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~-~~~~~l~~~~l~~k~~LlVlDdv~~~~-----~~~~~~l~~~l~~-~~~g-s~iivTtr~~ 313 (959)
. +.... .+.+ .+...+....-.+++.+|++|++..-. ...- +....|.. ...| -++|.+|...
T Consensus 242 ---a----~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~-d~~~~Lk~~l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 ---A----GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM-DAGNMLKPALARGELHCIGATTLD 312 (852)
T ss_pred ---h----cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh-HHHHHhchhhhcCceEEEEeCcHH
Confidence 0 00000 1122 222222222012468999999985321 0000 11111211 1223 3555555544
Q ss_pred hHHHh-------hcccceEecCCCChhhhHHHHHHh
Q 002154 314 TVALI-------MGSTQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 314 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
..... ......+.+...+.++...++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 33221 123567889999999999988755
No 172
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.31 E-value=0.0047 Score=70.05 Aligned_cols=210 Identities=13% Similarity=0.046 Sum_probs=118.1
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc------cccccceeEEEEeCCCCCHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS------VKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~v~~~~~~~ 237 (959)
+..+-+|+.+..+|.+++...-. .+...+.+.|.|.+|.|||..+..|.+... --..|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 34567899999999998865433 223455999999999999999999987421 112243 3456666666789
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCC-CCCCCEEEEeccc--hh
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKS-SPHGSKLLITTRK--ET 314 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~--~~ 314 (959)
+++..|..++...........+.+...+....-+.+..++++|++..--...-+-+...|.+ ..++||++|.+=. .+
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 99999999997333333333343333333110234678999998733111112234455555 3568887765421 11
Q ss_pred HH-Hhhc-------ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 315 VA-LIMG-------STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 315 v~-~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
.. +.+. ....+...|-+.++-.++...+..+. +.......+-++++|+..-|-.-.|+...
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11 1111 12355666666666666665554332 22233334444445544444444444433
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0039 Score=67.81 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=91.0
Q ss_pred cccc-chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 166 EIFG-RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 166 ~~~G-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.++| -+...+.+.+.+... .-.....++|+.|+||||+|+.+.+..--....... .+..-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 555677777777432 246678999999999999998875521000000000 000000111110
Q ss_pred HHhCCC-----CCcccccHHHHHHH---HHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-H
Q 002154 245 EALKPG-----SAKELVEFQSLMQH---IQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-V 315 (959)
Q Consensus 245 ~~l~~~-----~~~~~~~~~~~~~~---l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 315 (959)
..-.++ ........+++.+. +...-..+++-++|+|++...+..+...++..+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 000000 00011222333222 22111335566789999977776677778888887777887887776532 2
Q ss_pred HH-hhcccceEecCCCChhhhHHHHHH
Q 002154 316 AL-IMGSTQVISVNELSEMECWSVFES 341 (959)
Q Consensus 316 ~~-~~~~~~~~~l~~L~~~~~~~lf~~ 341 (959)
.. .......+++.+++.++..+.+..
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 22 223367899999999999888865
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0045 Score=66.07 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=102.0
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC-----cccc--cccceeEEEEeCCCCCHHHHHHHHHH
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN-----DSVK--RNFQKRIWVCVSEPFDEFRIARAIIE 245 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-----~~~~--~~F~~~~wv~v~~~~~~~~~~~~i~~ 245 (959)
.-+++.+.+.. +.-...+.++|+.|+||+++|+.+.+. .... +.-...-++.....+|...
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~------- 78 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV------- 78 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE-------
Confidence 34556666542 234678999999999999999877542 1000 0000000000001111000
Q ss_pred HhCCCCCcccccHHHHH---HHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH-Hhhc
Q 002154 246 ALKPGSAKELVEFQSLM---QHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA-LIMG 320 (959)
Q Consensus 246 ~l~~~~~~~~~~~~~~~---~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~ 320 (959)
+.+........++++. +.+......+++-++|+|++...+......+...+..-..++.+|++|.+. .+. ...+
T Consensus 79 -i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 79 -IKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred -EecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000001112233332 222222123556688999998887778888888888877778777777653 333 3334
Q ss_pred ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 321 STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 321 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
....+.+.+++++++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~---~----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG---I----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC---C----c-----hHHHHHHHcCCCHHHHHHH
Confidence 46789999999999998886531 0 1 1236788999999977554
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0051 Score=65.89 Aligned_cols=181 Identities=9% Similarity=0.065 Sum_probs=103.2
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC-----ccccccc-ce--eEEEEeCCCCCHHHHHHHHH
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN-----DSVKRNF-QK--RIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-----~~~~~~F-~~--~~wv~v~~~~~~~~~~~~i~ 244 (959)
.-+.+.+.+... .-.....+.|+.|+||+++|+.+.+. +.....- .| .-++.....+|...+.-
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--- 81 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP--- 81 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc---
Confidence 345566666432 23567889999999999999877552 1100000 00 00011111111100000
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH-Hhhccc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA-LIMGST 322 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~ 322 (959)
.. +.........++.+.+......+++-++|+|++...+..+...++..+..-..++.+|++|.+. .+. ...+..
T Consensus 82 --~~-~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 82 --ID-NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred --cc-CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 00 1111122233333333333244677788999998888778888888888877788888777653 333 222335
Q ss_pred ceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 323 QVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 323 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
..+.+.++++++..+.+..... . .. ..+...+..++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~-----~-~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS-----A-EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc-----c-Ch---HHHHHHHHHcCCCHHHH
Confidence 6899999999999988876531 1 11 12346778899999644
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.27 E-value=0.001 Score=62.65 Aligned_cols=89 Identities=19% Similarity=0.098 Sum_probs=45.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
..+.|+|++|+||||+|+.++.... ......+++..+........... .... ...............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIV-GGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhh-hccCCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999998522 22223455554443222211111 1111 11111111222222333331222
Q ss_pred cEEEEEeccCCCCC
Q 002154 273 EKFLLVLDDVWNED 286 (959)
Q Consensus 273 k~~LlVlDdv~~~~ 286 (959)
+..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 34899999997643
No 177
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.26 E-value=0.0062 Score=67.59 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=95.4
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|.+..+++|.+.+..+-. -+-...+-|.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4688999888888876642111 01234677899999999999999999984 33333 12211 1
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC------cC----C----chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED------YG----K----WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~------~~----~----~~~l~~~l~~--~~ 301 (959)
.+.... ++ . ....+...+... ....+.+|++|++.... .. . +..+...+.. ..
T Consensus 214 ~l~~k~---~g--e-----~~~~lr~lf~~A-~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EFVQKY---LG--E-----GPRMVRDVFRLA-RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHHh---cc--h-----hHHHHHHHHHHH-HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 11 0 111122222222 45678999999974310 00 0 1122222221 12
Q ss_pred CCCEEEEeccchhHH-Hh-hc---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETVA-LI-MG---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+..||+||...... .. .. -...+.+...+.++-.++|........ ....-++. ++++.+.|..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHH----HHHHHcCCCC
Confidence 356788888754322 11 11 145688888888888888876543211 11222333 5666676643
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0009 Score=71.46 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=67.7
Q ss_pred cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH-HhhcccceEecCCCChhhhHHHHHHhhccCCC
Q 002154 271 EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA-LIMGSTQVISVNELSEMECWSVFESLAFFGKS 348 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (959)
.+++-++|+|++...+...-..++..+..-..++.+|++|.+. .+. ........+.+.+++.+++.+.+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 4567799999998777667777888887767788777777653 332 222335688999999999988886531
Q ss_pred CCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 349 MQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.. ...+..++..++|.|+.+..+.
T Consensus 186 -~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1224568999999998765443
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.26 E-value=0.0024 Score=78.28 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=37.3
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++||+.+++++++.|... ...-+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999643 2345669999999999999988874
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.24 E-value=0.0022 Score=61.72 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=77.5
Q ss_pred cchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC----cccc--------------cccceeEEEEe
Q 002154 169 GRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN----DSVK--------------RNFQKRIWVCV 230 (959)
Q Consensus 169 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~v 230 (959)
|-++..+.|.+.+... .-...+.++|+.|+||+|+|..+.+. .... ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4556677777777533 24567899999999999999777552 1110 11222233332
Q ss_pred CCC---CCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEE
Q 002154 231 SEP---FDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLL 307 (959)
Q Consensus 231 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 307 (959)
... ...++ .+++...+. .....+++=++|+||+...+.+++..++..+.....++.+|
T Consensus 76 ~~~~~~i~i~~-ir~i~~~~~------------------~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKKKSIKIDQ-IREIIEFLS------------------LSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSSSSBSHHH-HHHHHHHCT------------------SS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccccchhhHHH-HHHHHHHHH------------------HHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 221 11211 123333222 11123566789999998888888889999998888899999
Q ss_pred Eeccchh-HH-HhhcccceEecCCCC
Q 002154 308 ITTRKET-VA-LIMGSTQVISVNELS 331 (959)
Q Consensus 308 vTtr~~~-v~-~~~~~~~~~~l~~L~ 331 (959)
++|++.. +. ........+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888743 22 222334566666653
No 181
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00014 Score=73.18 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=52.5
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh-ccCCCCcEEecCCCcCC--cccch
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL-CELYNLERLNVSGCSHL--RELPR 657 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l--~~lp~ 657 (959)
-..++.++.|||.++.+ ....++-.-+.+|++|++|+|+.|. +..--.+. -.+.||++|-|.|+. + ...-.
T Consensus 67 ~~~~~~v~elDL~~N~i----SdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s 140 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLI----SDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTS 140 (418)
T ss_pred HHHhhhhhhhhcccchh----ccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC-CChhhhhh
Confidence 35667888888888332 1112233335578888888888876 33211111 245688888887754 3 23334
Q ss_pred hhhccccCCeeecCCc
Q 002154 658 GIGKLRKLMYLYNAGT 673 (959)
Q Consensus 658 ~i~~L~~L~~L~l~~~ 673 (959)
.+..+++++.|+++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 4566777777777766
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.003 Score=73.66 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=41.1
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|-++.++++..++..... .....+++.|+|+.|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999865432 1223468999999999999999999974
No 183
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00061 Score=81.41 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=84.9
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc---cc-cceeEEEEeCCCCCHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK---RN-FQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~~~wv~v~~~~~~~~~~~ 241 (959)
.++||+++++++++.|... ...-+.++|++|+|||++|+.+++..... .. .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 5899999999999998653 22344689999999999999988631111 11 13444421 11111
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC------C--cCCchhHhhhcCCCCCCCEEEEeccch
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE------D--YGKWEPFYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~------~--~~~~~~l~~~l~~~~~gs~iivTtr~~ 313 (959)
+ . +... ..+.+...+.+...+-+.++.+|++|++..- . ......+..++... ..-++|-+|...
T Consensus 254 --l---a-G~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 --L---A-GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --h---c-ccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 0 1110 1112222222222212346789999999531 1 11111222222211 234555555544
Q ss_pred hHHHh-------hcccceEecCCCChhhhHHHHHHhh
Q 002154 314 TVALI-------MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 314 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
..... ......+.+++.+.++..+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43211 1235689999999999999987653
No 184
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.03 Score=55.34 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=74.5
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
+-..++|-|...+.+++--..-. .+....-|.+||.-|.|||.|++.+.+. +....-.. |-|.+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glrL--VEV~k---------- 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLRL--VEVDK---------- 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCeE--EEEcH----------
Confidence 34568999988888877543221 2334567889999999999999999884 43333222 22221
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCC---CCCCEEEEeccc
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSS---PHGSKLLITTRK 312 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~ 312 (959)
.+......+.+.|+ ...+||+|..||+.- .+...+..+...+..+ .+...++..|.+
T Consensus 122 ----------~dl~~Lp~l~~~Lr---~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ----------EDLATLPDLVELLR---ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHHhhHHHHHHHHh---cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11122233444443 347899999999843 3455677788887754 234445555544
No 185
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0063 Score=65.95 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=104.2
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc---cccccccee-----EEEEeCCCCCHHHHHHHHH
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND---SVKRNFQKR-----IWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~-----~wv~v~~~~~~~~~~~~i~ 244 (959)
.-+++.+.+... .-...+.+.|+.|+||+++|..+...- .....-.|. -++.....+|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 445666666432 346788899999999999997765420 000000000 01111111111100
Q ss_pred HHhCCC---CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHH-Hhh
Q 002154 245 EALKPG---SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVA-LIM 319 (959)
Q Consensus 245 ~~l~~~---~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~ 319 (959)
.+. .......+.++.+.+......+++-++|+|++...+..+...++..+..-..++.+|++|.+. .+. ...
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 011122233333333333245677799999998887778888888888877788777777653 333 223
Q ss_pred cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHH
Q 002154 320 GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKT 375 (959)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 375 (959)
+....+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|..+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~------~~~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV------TMS---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc------CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 335688999999999988876532 111 12245789999999975443
No 186
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.17 E-value=0.0085 Score=65.09 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHH-HHHhcCcccccccceeEEEEeCC---CCCHHHHHHHHHH
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLA-QFAYNNDSVKRNFQKRIWVCVSE---PFDEFRIARAIIE 245 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~i~~ 245 (959)
|.+.+++|..||... .-..|.|.||-|+||+.|+ .++..+.+. ++.+++.+ ..+...++..++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 667889999999754 3479999999999999999 777775322 44555432 2233445555555
Q ss_pred HhCC----------------------CCCcc--cccHHHHHHH-------HHHHHhc---------------------Cc
Q 002154 246 ALKP----------------------GSAKE--LVEFQSLMQH-------IQEYVVE---------------------GE 273 (959)
Q Consensus 246 ~l~~----------------------~~~~~--~~~~~~~~~~-------l~~~~l~---------------------~k 273 (959)
+++- +...+ .....++.+. |++..+. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5431 11111 1111222222 2221111 22
Q ss_pred EEEEEeccCCCCCc---CCchhHhh---hcCCCCCCCEEEEeccchhHHH----hhc--ccceEecCCCChhhhHHHHHH
Q 002154 274 KFLLVLDDVWNEDY---GKWEPFYN---CLKSSPHGSKLLITTRKETVAL----IMG--STQVISVNELSEMECWSVFES 341 (959)
Q Consensus 274 ~~LlVlDdv~~~~~---~~~~~l~~---~l~~~~~gs~iivTtr~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~ 341 (959)
+-+||+|+.-.... --|+.+.. .+- ..+-.+||++|.+..... .+. ..+.+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 67999999844221 11222221 121 234457888887654443 332 356889999999999999998
Q ss_pred hhccCCCC------------CCC----chHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHH-HHHHHHhh
Q 002154 342 LAFFGKSM------------QER----ENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEK-EWQNILES 395 (959)
Q Consensus 342 ~~~~~~~~------------~~~----~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~-~w~~~l~~ 395 (959)
+....... ... .....-....++.+||--.-+..+++.++...+++ .-..+.++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87543110 000 12233334778899999999999999999876543 34444443
No 187
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0013 Score=74.00 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=116.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-+.....|.+.+.... -...-...|+-|+||||+|+-+..- + .+. -| ...+++..-...++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~Aka--l--NC~--~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKA--L--NCE--NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHH--h--cCC--CC-CCCCcchhhhhhHhhh
Confidence 367999999999999986543 3456678999999999999888652 1 000 00 1112222222222222
Q ss_pred HHh-------CCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hH-
Q 002154 245 EAL-------KPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TV- 315 (959)
Q Consensus 245 ~~l-------~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v- 315 (959)
..- ......+.++.+.+.+.+.-.-.+++.=+.|+|+|.-.+...|..+...+..-....+.|+.|.+. .+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 220 001122333344444444333345667799999998777788888888777766666666666653 22
Q ss_pred HHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 316 ALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 316 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
.......+.|.+..++.++-...+...+-...-..+ .+...-|++..+|...-.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLRDA 217 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChhhH
Confidence 233455778999999999888888776643222222 233346777777766533
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.0014 Score=66.27 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV 230 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 230 (959)
.-.++|+|..|+|||||+..+..+ ....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346789999999999999999874 6678887777754
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0078 Score=62.94 Aligned_cols=179 Identities=16% Similarity=0.171 Sum_probs=98.4
Q ss_pred cccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++=|-++.+++|.+.+.-+-.+ +-..++-|.++|++|.|||-||++|+++ ....| +.|.. .
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----S 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----S 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc----H
Confidence 35678899999998876433211 2356788999999999999999999994 44445 33222 1
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC-------CcC-------CchhHhhhcCCC--C
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE-------DYG-------KWEPFYNCLKSS--P 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~-------~~~-------~~~~l~~~l~~~--~ 301 (959)
++.+.. ++ . -..+++.+-..+-...+..|++|.+... ... ..-+++..+... .
T Consensus 220 ElVqKY---iG--E------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ELVQKY---IG--E------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHHH---hc--c------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 122211 11 0 1233444444424457899999988431 001 111222333322 2
Q ss_pred CCCEEEEeccchhHHHh--hcc---cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETVALI--MGS---TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
...|||.+|...++... +.+ ...++++.-+.+.=.++|+-++..-. -...-+++ .+++.|.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCc
Confidence 35689988876543321 122 45677774444444556665543222 12333455 5666676654
No 190
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.13 E-value=0.0034 Score=76.20 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=71.1
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.++.++.|.+.+..... .......++.++|+.|+|||+||+.++.. . +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 3578989888988888764211 01234557899999999999999999873 2 2234555554422111
Q ss_pred HHHHHhCCCC-CcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC
Q 002154 242 AIIEALKPGS-AKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS 300 (959)
Q Consensus 242 ~i~~~l~~~~-~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (959)
.+...++... ..+......+.+.++ +...-+++||++.....+.+..+...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~----~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVR----KHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHH----hCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1111122111 111111222333322 234459999999887777777777766544
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.11 E-value=0.0065 Score=63.89 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=29.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 240 (959)
.-|.+.|++|+|||+||+.+.+ .... ..+.+++....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3567999999999999999986 2222 23456666555555544
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00025 Score=68.75 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-cccceeEE
Q 002154 194 IISLVGMGGIGKTTLAQFAYNNDSVK-RNFQKRIW 227 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 227 (959)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999864433 45676665
No 193
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=0.00017 Score=64.18 Aligned_cols=84 Identities=30% Similarity=0.318 Sum_probs=52.9
Q ss_pred hccCCcccEEEccccCccccccccccccccccc-cCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEK-LLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGI 659 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~-l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 659 (959)
+.+...|...+|++ +.++++|+.+.. .+-+..|+|++|. +.++|..+..++.|+.|+++.|+ +...|..|
T Consensus 49 l~~~~el~~i~ls~-------N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLSD-------NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEeccc-------chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 44555666666666 556666655443 3356666666666 66666666666667777776665 66666666
Q ss_pred hccccCCeeecCCc
Q 002154 660 GKLRKLMYLYNAGT 673 (959)
Q Consensus 660 ~~L~~L~~L~l~~~ 673 (959)
..|.+|-.|+..++
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 66666666666555
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00058 Score=80.85 Aligned_cols=107 Identities=27% Similarity=0.330 Sum_probs=76.7
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccc--h
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLP--E 633 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp--~ 633 (959)
-+|.||+|.+.+..... ..+-..+.+|++|+.||+++ +.+..+ ..+++|++|+.|.+++=. +..-+ .
T Consensus 146 ~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~-------TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~ 214 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISG-------TNISNL-SGISRLKNLQVLSMRNLE-FESYQDLI 214 (699)
T ss_pred hCcccceEEecCceecc--hhHHHHhhccCccceeecCC-------CCccCc-HHHhccccHHHHhccCCC-CCchhhHH
Confidence 58999999998865321 11334468899999999999 667766 668899999999988765 54333 2
Q ss_pred hhccCCCCcEEecCCCcCCcccchh-------hhccccCCeeecCCcc
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRG-------IGKLRKLMYLYNAGTD 674 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 674 (959)
.+.+|++|+.||+|...... -+.. -..|++||.|+.+++.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 57889999999998755322 2211 1248899999988873
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.0016 Score=69.46 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 169 GRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 169 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
+|....+...+++..-.. ....+-+.++|..|+|||.||..+++... +..+ .+.+++++ .++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 454555555566543221 12346799999999999999999998532 2222 34566653 45566655543
Q ss_pred CCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchh--Hhhhc-CCC-CCCCEEEEeccc
Q 002154 249 PGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEP--FYNCL-KSS-PHGSKLLITTRK 312 (959)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 312 (959)
.+ +.. ..+... .+-=||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~~------~~~---~~l~~l---~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVK---EKIDAV---KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHH---HHHHHh---cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 122 222222 245689999998776777864 44443 222 245568888863
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0043 Score=76.17 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=75.9
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.+.+. ....-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 3588999999999888864321 01223468899999999999999999873 211112234444443211 1
Q ss_pred HHHHHhCCCCCccc---ccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEE
Q 002154 242 AIIEALKPGSAKEL---VEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLL 307 (959)
Q Consensus 242 ~i~~~l~~~~~~~~---~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 307 (959)
.....+. +.+..- .....+...++ ....-+|+|||+...+...+..+...+..+. ..+-||
T Consensus 641 ~~~~~Li-G~~pgy~g~~~~g~l~~~v~----~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 641 HSVSRLV-GAPPGYVGYEEGGYLTEAVR----RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred hhHHHHh-CCCCcccccchhHHHHHHHH----hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 1112221 111111 11112222221 1233699999997767777777777665431 223377
Q ss_pred Eeccc
Q 002154 308 ITTRK 312 (959)
Q Consensus 308 vTtr~ 312 (959)
+||..
T Consensus 716 ~TSN~ 720 (857)
T PRK10865 716 MTSNL 720 (857)
T ss_pred EeCCc
Confidence 78765
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0012 Score=77.19 Aligned_cols=133 Identities=17% Similarity=0.298 Sum_probs=80.8
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF---QKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 238 (959)
..++|.++.++.+.+.+..... ......++...+|+.|||||.||+.+... -| +..+-++.|+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSE------ 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSE------ 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHH------
Confidence 4689999999999998865432 13455678889999999999999888762 23 3334444433
Q ss_pred HHH-HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEE-EEEeccCCCCCcCCchhHhhhcCCCC-----------CCCE
Q 002154 239 IAR-AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKF-LLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSK 305 (959)
Q Consensus 239 ~~~-~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 305 (959)
... .-+..|- +.+++-...++ -..|.+. .+.++| +|.||++....++...-+...|..+. .++-
T Consensus 560 y~EkHsVSrLI-GaPPGYVGyee-GG~LTEa-VRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNti 636 (786)
T COG0542 560 YMEKHSVSRLI-GAPPGYVGYEE-GGQLTEA-VRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTI 636 (786)
T ss_pred HHHHHHHHHHh-CCCCCCceecc-ccchhHh-hhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeE
Confidence 222 1222332 22221111111 1123333 556777 99999998777766777777777652 2455
Q ss_pred EEEecc
Q 002154 306 LLITTR 311 (959)
Q Consensus 306 iivTtr 311 (959)
||+||.
T Consensus 637 IImTSN 642 (786)
T COG0542 637 IIMTSN 642 (786)
T ss_pred EEEecc
Confidence 666765
No 198
>PRK08181 transposase; Validated
Probab=96.98 E-value=0.0011 Score=69.03 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=55.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
.-+.++|+.|+|||.||..+.+. .......++|+++ .+++..+..... ....+...+ .. .
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l~---~l---~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR------ELQLESAIA---KL---D 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHHH---HH---h
Confidence 45899999999999999999874 2222333456653 345555433321 112222222 22 2
Q ss_pred cEEEEEeccCCCCCcCCch--hHhhhcCCCCCCCEEEEeccc
Q 002154 273 EKFLLVLDDVWNEDYGKWE--PFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~ 312 (959)
+.=||||||+.......|. .+...+.....+..+||||..
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3459999999654333332 233333322112358888875
No 199
>PRK12377 putative replication protein; Provisional
Probab=96.95 E-value=0.0017 Score=66.78 Aligned_cols=102 Identities=21% Similarity=0.136 Sum_probs=57.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.++|..|+|||+||..+++. .......++++++. +++..+-.... . ...... .+.. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~-~----~~~~~~---~l~~--l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYD-N----GQSGEK---FLQE--L- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHh-c----cchHHH---HHHH--h-
Confidence 457899999999999999999985 33333345666653 34444444332 1 011111 2222 2
Q ss_pred CcEEEEEeccCCCCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 272 GEKFLLVLDDVWNEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
.+.=||||||+.......|.. +...+... .+.--+||||..
T Consensus 162 ~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 355699999996544445543 33333321 223347888763
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=96.94 E-value=0.011 Score=69.54 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=93.7
Q ss_pred cccccchhHHHHHHHH---HhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNR---LLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~---L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.++.|.++..+++.+. +..... -+....+-|.++|++|+|||+||+.+++.. .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 4578887666555444 332211 012235568999999999999999998842 21 23333311 1
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC----------cCCchh----HhhhcCC--CCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED----------YGKWEP----FYNCLKS--SPH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~ 302 (959)
+. .... + .....+...+... ....+.+|++||+..-. ...+.. +...+.. ...
T Consensus 252 f~----~~~~-g-----~~~~~vr~lF~~A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FV----EMFV-G-----VGAARVRDLFKKA-KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HH----HHhh-h-----hhHHHHHHHHHHH-hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11 1110 0 0112233334444 56788999999994321 111222 2222221 233
Q ss_pred CCEEEEeccchhHH-Hhh-c---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC
Q 002154 303 GSKLLITTRKETVA-LIM-G---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG 368 (959)
Q Consensus 303 gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 368 (959)
+..||.||...... ..+ . -...+.+...+.++-.++++.++.... .. .......+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LS--PDVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cc--hhHHHHHHHhcCCC
Confidence 55667677654322 211 1 135788888888888888887764311 11 12233478888887
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0069 Score=65.39 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=67.3
Q ss_pred cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHH-HhhcccceEecCCCChhhhHHHHHHhhccCCC
Q 002154 271 EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVA-LIMGSTQVISVNELSEMECWSVFESLAFFGKS 348 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (959)
.+++-++|+|++...+..++..+...+..-..++.+|++|.+ ..+. ...+....+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 456668899999888888888999988887778877766665 3333 223335789999999999998887641 1
Q ss_pred CCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 349 MQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.+ . ..++..++|.|..+..+.
T Consensus 206 ---~~-~----~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD-A----DALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch-H----HHHHHHcCCCHHHHHHHH
Confidence 11 1 135778899998655443
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.90 E-value=0.00085 Score=65.65 Aligned_cols=100 Identities=22% Similarity=0.404 Sum_probs=50.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
..-+.++|..|+|||.||..+.+.. ....+ .+.|+++ .+++.. +... ......+...+.+ .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~----l~~~--~~~~~~~~~~~~l-----~ 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDE----LKQS--RSDGSYEELLKRL-----K 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHH----HHCC--HCCTTHCHHHHHH-----H
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceecc----cccc--ccccchhhhcCcc-----c
Confidence 4569999999999999999998742 22222 3456653 234443 3311 1111222222222 2
Q ss_pred CcEEEEEeccCCCCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 272 GEKFLLVLDDVWNEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
+-=||||||+.......|.. +...+... .++ .+||||..
T Consensus 108 -~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 -RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp -TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred -cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23578899997654444432 22222211 223 58888874
No 203
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.89 E-value=0.0037 Score=77.05 Aligned_cols=138 Identities=12% Similarity=0.171 Sum_probs=78.8
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+... ....-...+.++.+.-..... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-V- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-H-
Confidence 4589999999999998875321 01223567889999999999999999873 211112234444443222111 1
Q ss_pred HHHHHhCCCC-CcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEe
Q 002154 242 AIIEALKPGS-AKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLIT 309 (959)
Q Consensus 242 ~i~~~l~~~~-~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 309 (959)
..-++... ..+......+...++. ....+|+||++...+.+.+..+...+..+. ..+-||+|
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~----~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR----KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc----CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11112110 0111111223333322 234599999998877777888887775541 23447777
Q ss_pred ccc
Q 002154 310 TRK 312 (959)
Q Consensus 310 tr~ 312 (959)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 763
No 204
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.88 E-value=5.5e-05 Score=84.79 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=69.8
Q ss_pred hHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccc
Q 002154 578 PQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELP 656 (959)
Q Consensus 578 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp 656 (959)
...+.-++.|+.|+|+. |.+.+. +.+..|++|++|||+.|. +..+|. +...+. |+.|++++|. +++|
T Consensus 180 D~SLqll~ale~LnLsh-------Nk~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSH-------NKFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL- 247 (1096)
T ss_pred HHHHHHHHHhhhhccch-------hhhhhh-HHHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-
Confidence 34455567788888887 555544 367778888888888887 777776 233344 8888888876 7766
Q ss_pred hhhhccccCCeeecCCccccccCCc--cCcCCCCCCccCceeec
Q 002154 657 RGIGKLRKLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKFVVG 698 (959)
Q Consensus 657 ~~i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~ 698 (959)
.+|.+|.+|++|+++.| .+..... -++.|..|..|.+-.+.
T Consensus 248 ~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 57888888888888876 2222111 13445556666554443
No 205
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0014 Score=67.91 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=52.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
..-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... . . .....+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~----~--~---~~~~~l~~l--- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH----A--G---RLQAELVKL--- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh----c--C---cHHHHHHHh---
Confidence 34689999999999999999877422 12222 2333 23344444433221 0 1 112223332
Q ss_pred CcEEEEEeccCCCCCcCCch--hHhhhcCC-CCCCCEEEEeccc
Q 002154 272 GEKFLLVLDDVWNEDYGKWE--PFYNCLKS-SPHGSKLLITTRK 312 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 312 (959)
.+.-+||+||+.......+. .+...+.. ...++ +|+||..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 23458999999654322332 23333322 12344 8888875
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.87 E-value=0.0037 Score=65.54 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=54.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRN-FQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
...+.++|..|+|||+||..+++. +... -..++|++.. +++..+...+ +.....+.. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~-----------~~~~~~~~~--~ 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF-----------DLLEAKLNR--M 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH-----------HHHHHHHHH--h
Confidence 467899999999999999999985 3322 2345666642 2333332221 111122222 2
Q ss_pred cCcEEEEEeccCC-----CCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 271 EGEKFLLVLDDVW-----NEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 271 ~~k~~LlVlDdv~-----~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
.+-=||||||+. .+....|.. +...+... ..+..+||||..
T Consensus 176 -~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 176 -KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred -cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 234599999993 222334543 33333321 234558888863
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.85 E-value=0.0026 Score=77.81 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=76.5
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-+.....+-+++++-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 4689999999999998864311 12345568999999999999999888663 2111112222232221100 0
Q ss_pred HHHHHhCCCCCcc---cccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEE
Q 002154 242 AIIEALKPGSAKE---LVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLL 307 (959)
Q Consensus 242 ~i~~~l~~~~~~~---~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 307 (959)
. ...+. +...+ ......+...++ +...-+|+||++...+.+.++.+...+..+. ..+-||
T Consensus 640 ~-~~~l~-g~~~gyvg~~~~g~L~~~v~----~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 640 T-VSRLK-GSPPGYVGYGEGGVLTEAVR----RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred h-hcccc-CCCCCcccccccchHHHHHH----hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 1 11121 11111 111122333332 2355699999997777766777777666552 345566
Q ss_pred Eeccc
Q 002154 308 ITTRK 312 (959)
Q Consensus 308 vTtr~ 312 (959)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 77653
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.85 E-value=0.0011 Score=70.82 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=42.4
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+++|-++.++++++++...........+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654322345689999999999999999999874
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.85 E-value=0.005 Score=66.30 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEP-FDEFRIARAIIEALKPG 250 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~-~~~~~~~~~i~~~l~~~ 250 (959)
-..++++.+..-. .-..+.|+|..|+|||||++.+.+.. ...+-+. .+|+.+.+. ..+.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3456888876432 33566899999999999999988742 1223344 367777654 56778888887766522
Q ss_pred CCcccc-c----HHHHHHHHHHHHhcCcEEEEEeccC
Q 002154 251 SAKELV-E----FQSLMQHIQEYVVEGEKFLLVLDDV 282 (959)
Q Consensus 251 ~~~~~~-~----~~~~~~~l~~~~l~~k~~LlVlDdv 282 (959)
...... . ............-.+++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111111 1 1122233333334589999999999
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.83 E-value=0.0055 Score=62.92 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=57.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
...+.++|.+|+|||+||..+++.. ...-..++++++ .+++..+-.... . .....+.+.+ . +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~------~~l~~~l~~~~~-~---~~~~~~~~l~----~-l~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV------ADIMSAMKDTFS-N---SETSEEQLLN----D-LS 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH------HHHHHHHHHHHh-h---ccccHHHHHH----H-hc
Confidence 4578999999999999999999853 222234455543 344444433332 1 1112222222 2 33
Q ss_pred CcEEEEEeccCCCCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 272 GEKFLLVLDDVWNEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
+.=+||+||+.......|+. +...+... ...-.+||||..
T Consensus 162 -~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 -NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred -cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488889997665556664 22222221 223457788764
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.033 Score=61.05 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 171 QKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 171 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444567777776542 257899999999999999999999875
No 212
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.80 E-value=0.021 Score=66.22 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=94.5
Q ss_pred cccccchhHHHHHHHHHh---ccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLL---CESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|-++.++++.+.+. .... .+....+-+.++|++|+|||+||+.+++.. ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 468888877666655442 1110 012334568899999999999999999842 222 233321 11
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC----------cCCchhHh----hhcCC--CCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED----------YGKWEPFY----NCLKS--SPH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~----~~l~~--~~~ 302 (959)
+. .... + .....+...+... ....+.+|++||+..-. ...+.... ..+.. ...
T Consensus 124 ~~----~~~~-g-----~~~~~l~~~f~~a-~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FV----EMFV-G-----VGASRVRDLFEQA-KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HH----HHHh-c-----ccHHHHHHHHHHH-HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11 1111 1 0112233333333 44567899999984311 11122222 22211 123
Q ss_pred CCEEEEeccchh-HHHhh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHH
Q 002154 303 GSKLLITTRKET-VALIM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTI 376 (959)
Q Consensus 303 gs~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~ 376 (959)
+..||.||.... +...+ .-...+.+...+.++-.++|..++..... ....++ ..+++.+.| .+--+..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~l----~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVDL----KAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-CcchhH----HHHHHhCCCCCHHHHHHH
Confidence 445666665532 11111 12457888888888888888876532211 111222 378888877 33444333
No 213
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.022 Score=62.44 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
..+...+.+.|++|+|||+||..++.. ..|..+=-++-.+ + ++ -.+......+.+.+.+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~------m-------iG---~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPED------M-------IG---LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHH------c-------cC---ccHHHHHHHHHHHHHHh
Confidence 346778889999999999999999874 4465332221110 0 00 01112223344555555
Q ss_pred HhcCcEEEEEeccCCCCCcCCchh------------HhhhcCCC-CCCCEE--EEeccchhHHHhhcc----cceEecCC
Q 002154 269 VVEGEKFLLVLDDVWNEDYGKWEP------------FYNCLKSS-PHGSKL--LITTRKETVALIMGS----TQVISVNE 329 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~~~~~~~~~------------l~~~l~~~-~~gs~i--ivTtr~~~v~~~~~~----~~~~~l~~ 329 (959)
.+.+--.||+||+.. .-+|-. +...+... ..|-|. +-||....+...|+- ...|.++.
T Consensus 595 -YkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 595 -YKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred -hcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 677888999999932 223332 22333332 234454 447777778777654 45788999
Q ss_pred CCh-hhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 330 LSE-MECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 330 L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
++. ++..+.+...- ...+.....++.+.+.+| +-.+|+.+-.++
T Consensus 672 l~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred cCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 887 66667666532 123445566666676666 333444444443
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=96.74 E-value=0.018 Score=69.17 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=97.6
Q ss_pred CCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEE
Q 002154 200 MGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLV 278 (959)
Q Consensus 200 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlV 278 (959)
|.++||||+|..++++. ....++ ..+-++.++..... .+++++..+....+. -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~----------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI----------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc----------------CCCCCEEEE
Confidence 78899999999999852 112222 34567777654443 344444433200000 112457999
Q ss_pred eccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHHHh-hcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHH
Q 002154 279 LDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVALI-MGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLE 356 (959)
Q Consensus 279 lDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 356 (959)
+|++...+.++...++..+......+++|++|.+. .+... ......+.+.+++.++-...+...+...+- .. ..
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~ 711 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TE 711 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CH
Confidence 99998877777788888887656677777766653 33222 233578999999999988887765532111 11 13
Q ss_pred HHHHHHHHhcCCchhHHHHHHH
Q 002154 357 KIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 357 ~~~~~i~~~c~G~Plai~~~~~ 378 (959)
+....|++.++|.+..+..+..
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4556899999998865544433
No 215
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.74 E-value=0.04 Score=55.55 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=117.8
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHH----hcCcccccccceeEEEEeCCC---------
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFA----YNNDSVKRNFQKRIWVCVSEP--------- 233 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v----~~~~~~~~~F~~~~wv~v~~~--------- 233 (959)
+.++++....+..... ++...-+.++|+.|.||-|.+..+ |.---.+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666543 235678899999999999877554 442111222344455543332
Q ss_pred -C-----------CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC-cEE-EEEeccCCCCCcCCchhHhhhcCC
Q 002154 234 -F-----------DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG-EKF-LLVLDDVWNEDYGKWEPFYNCLKS 299 (959)
Q Consensus 234 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-k~~-LlVlDdv~~~~~~~~~~l~~~l~~ 299 (959)
+ ..+.+.++++++......-+ ..+ +.| ++|+-.+.+-+.++-..++..+..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie---------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE---------------TQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchh---------------hccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 1 12344555555543111000 122 334 566666655444555566666666
Q ss_pred CCCCCEEEEeccc--hhHHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 300 SPHGSKLLITTRK--ETVALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 300 ~~~gs~iivTtr~--~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
-...+|+|+...+ +-+...-...-.+++...+++|....+.+.+-..+- ..| .+++.+|+++++|.-.-+..+.
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l--~lp--~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL--QLP--KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc--cCc--HHHHHHHHHHhcccHHHHHHHH
Confidence 6678888875443 222222122447889999999999998877643221 122 6788899999999655443443
Q ss_pred HHhcCCC----------CHHHHHHHHhhhhhh
Q 002154 378 SLLLSKN----------TEKEWQNILESEIWE 399 (959)
Q Consensus 378 ~~l~~~~----------~~~~w~~~l~~~~~~ 399 (959)
..++-+. ..-+|+-.+.+....
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 3333221 245798877764443
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.71 E-value=0.0051 Score=75.65 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=76.5
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.++.++.|.+.+..... ........+.++|+.|+|||+||+.+.+. .-+.-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999888753221 12233456789999999999999988762 2111122334444432211111
Q ss_pred HHHHHhCCCC-CcccccHHHHHHHHHHHHhcCcE-EEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEE
Q 002154 242 AIIEALKPGS-AKELVEFQSLMQHIQEYVVEGEK-FLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLI 308 (959)
Q Consensus 242 ~i~~~l~~~~-~~~~~~~~~~~~~l~~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 308 (959)
..-++... ..+......+... ++.++ -+++||++...+.+.+..+...+..+. ..+-+|+
T Consensus 585 --~~l~g~~~gyvg~~~~~~l~~~-----~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQLTEA-----VRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred --HHhcCCCCcccCcCccchHHHH-----HHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11122110 1111111223333 33334 599999998877777777777776541 3455666
Q ss_pred eccc
Q 002154 309 TTRK 312 (959)
Q Consensus 309 Ttr~ 312 (959)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6654
No 217
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.70 E-value=0.0027 Score=61.42 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=66.7
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHHHHHHHHHH
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS-VKRNFQKRIWVCVSEPFDEFRIARAIIE 245 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 245 (959)
++|.+..++++++.+..... ...-|.|+|..|+||+.+|+.+++... ..+.| +-|+++. .+.+.+-.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhh-hhcchhhhhhhc
Confidence 47888888888888765432 235567999999999999999998422 12222 3344443 233333333333
Q ss_pred HhCCCCCccc-ccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC------C-----CCCEEEEeccc
Q 002154 246 ALKPGSAKEL-VEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS------P-----HGSKLLITTRK 312 (959)
Q Consensus 246 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr~ 312 (959)
.-. +...+. .... ..+.. ...=.|+||++..-....-..+...+..+ . ...|||.||..
T Consensus 73 ~~~-~~~~~~~~~~~---G~l~~----A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEK-GAFTGARSDKK---GLLEQ----ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCS-SSSTTTSSEBE---HHHHH----TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccc-ccccccccccC---Cceee----ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 221 111111 0011 12222 13345788998765544444455544322 1 25688888875
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.70 E-value=0.0021 Score=63.51 Aligned_cols=131 Identities=23% Similarity=0.265 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe----CCCC-----CH---
Q 002154 169 GRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV----SEPF-----DE--- 236 (959)
Q Consensus 169 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~~-----~~--- 236 (959)
.+..+....++.|. ...++.+.|++|.|||.||....-+.-..+.|+.++++.- .+.. +.
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45566777777776 2468999999999999999777655334477877776641 1110 00
Q ss_pred -HHHHHHHHHHhCCCCCcccccHHHHHHHH------HHHHhcCc---EEEEEeccCCCCCcCCchhHhhhcCCCCCCCEE
Q 002154 237 -FRIARAIIEALKPGSAKELVEFQSLMQHI------QEYVVEGE---KFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKL 306 (959)
Q Consensus 237 -~~~~~~i~~~l~~~~~~~~~~~~~~~~~l------~~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 306 (959)
.-.+.-+...+..- ......+.+.+.- ..+ ++|+ ..+||+|++.+.+..++..+ +-..+.|||+
T Consensus 76 ~~p~~~p~~d~l~~~--~~~~~~~~~~~~~~Ie~~~~~~-iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~ski 149 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL--FGKEKLEELIQNGKIEIEPLAF-IRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKI 149 (205)
T ss_dssp --TTTHHHHHHHTTT--S-TTCHHHHHHTTSEEEEEGGG-GTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EE
T ss_pred HHHHHHHHHHHHHHH--hChHhHHHHhhcCeEEEEehhh-hcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEE
Confidence 01112222222200 0111122221100 011 4454 45999999988765544444 5556789999
Q ss_pred EEeccch
Q 002154 307 LITTRKE 313 (959)
Q Consensus 307 ivTtr~~ 313 (959)
|++--..
T Consensus 150 i~~GD~~ 156 (205)
T PF02562_consen 150 IITGDPS 156 (205)
T ss_dssp EEEE---
T ss_pred EEecCce
Confidence 9987543
No 219
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.69 E-value=0.0047 Score=64.10 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCCC-----------Ccc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN----FQKRIWVCVSEPFDEFRIARAIIEALKPGS-----------AKE 254 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----------~~~ 254 (959)
..-.++.|+|.+|+|||+||.+++........ -..++|++....++...+. ++++...... ...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 35689999999999999999988743222221 3578899988877765443 3334432110 011
Q ss_pred cccHHHHHHHHHHHHhcC-cEEEEEeccCC
Q 002154 255 LVEFQSLMQHIQEYVVEG-EKFLLVLDDVW 283 (959)
Q Consensus 255 ~~~~~~~~~~l~~~~l~~-k~~LlVlDdv~ 283 (959)
..+...+...+...+.+. +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 112223334444442334 66788888873
No 220
>PTZ00494 tuzin-like protein; Provisional
Probab=96.68 E-value=0.6 Score=50.87 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=102.4
Q ss_pred ccCCccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 002154 160 SSIDESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 160 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 239 (959)
.+..+..+|.|+.|-..+.+.|.+.+ ...++++.+.|.-|.||++|.+.....+.+ ..++|.+... ++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 34456679999999888888887653 467899999999999999999988875333 3467887754 456
Q ss_pred HHHHHHHhCCCCCcc-cccHHHHHHHHHHHH--hcCcEEEEEeccCCCCCcCCchhHh---hhcCCCCCCCEEEEeccch
Q 002154 240 ARAIIEALKPGSAKE-LVEFQSLMQHIQEYV--VEGEKFLLVLDDVWNEDYGKWEPFY---NCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~~--l~~k~~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~ 313 (959)
++.+.+.++-....- .+-++-+.+..+... ..++.-+||+-=-.- .....+. ..|.....-|.|++----+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechHh
Confidence 788888887332211 112222222222210 346666666642211 1122211 2344445566777643322
Q ss_pred hHHHh---hcccceEecCCCChhhhHHHHHHhh
Q 002154 314 TVALI---MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 314 ~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
..... ...-..|.+++++.++|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 22111 1123478899999999998887653
No 221
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.64 E-value=0.00025 Score=79.80 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=89.5
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.++..+++..+........+ .-++.|++|+++.|++.... .+..+..|+.|||++ |.+..+|..
T Consensus 164 n~L~~a~fsyN~L~~mD~SL----qll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsy-------N~L~~vp~l 227 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESL----QLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSY-------NCLRHVPQL 227 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHH----HHHHHhhhhccchhhhhhhH-----HHHhccccccccccc-------chhcccccc
Confidence 44444555544433222222 36788999999998843222 478899999999999 778888763
Q ss_pred -ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCcc
Q 002154 611 -IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 674 (959)
...+ +|..|.|++|. ++.|-. |.+|.+|+.||++.|- +...- .-++.|..|+.|++.||+
T Consensus 228 ~~~gc-~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGC-KLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhh-hheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2233 49999999998 888864 8999999999999865 43322 237788999999999985
No 222
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.62 E-value=0.012 Score=70.67 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=69.1
Q ss_pred ccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.++|.++.++.|.+.+..... ........+.++|+.|+|||++|+.+... ... ..+.+++++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence 578999999999888763211 01234567899999999999999999874 222 22344444322111 1
Q ss_pred HHHHhCCCCC-cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC
Q 002154 243 IIEALKPGSA-KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS 300 (959)
Q Consensus 243 i~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (959)
+.+-++.... .+......+...++ +...-+|+||++.....+.+..+...+..+
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~----~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVI----KHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHH----hCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 1111221110 01111112222222 234569999999877766677777766543
No 223
>PRK09183 transposase/IS protein; Provisional
Probab=96.61 E-value=0.0042 Score=64.94 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=52.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
..+.|+|+.|+|||+||..+..... ...+ .+.+++ ..++...+..... . .. +...+... + .
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~-~-----~~---~~~~~~~~-~-~ 163 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQR-Q-----GR---YKTTLQRG-V-M 163 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHH-C-----Cc---HHHHHHHH-h-c
Confidence 4677999999999999999976321 1122 223443 2233333322221 0 01 11222222 1 3
Q ss_pred cEEEEEeccCCCCCcCCch--hHhhhcCCC-CCCCEEEEeccc
Q 002154 273 EKFLLVLDDVWNEDYGKWE--PFYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 312 (959)
+.-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 4569999999754333333 233333221 2344 8888864
No 224
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.59 E-value=0.00054 Score=61.03 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
....|....+++|. +..+++.+-.+++.+..|+|++ +.+..+|..+..++.||.|+++.|. +...|..|
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~-------neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLAN-------NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcch-------hhhhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 44556667777775 5555666667788899999998 8899999999999999999999999 99999999
Q ss_pred ccCCCCcEEecCCCcCCcccchh
Q 002154 636 CELYNLERLNVSGCSHLRELPRG 658 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~ 658 (959)
..|.+|-.||..++. ...+|.+
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHH
Confidence 899999999998876 6677765
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.59 E-value=0.023 Score=58.88 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=93.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC-cccccccceeEEEEeCCCCCH-HHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN-DSVKRNFQKRIWVCVSEPFDE-FRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~v~~~~~~-~~~~~~ 242 (959)
..++|-.++.+++.+++....- .+...-|.|+|+.|.|||+|...+..+ .++..+| +-|........ +-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 4688999999999888865432 234567889999999999999777765 2233333 34444443322 234555
Q ss_pred HHHHhCCCC---CcccccHHHHHHHHHHHHhc------CcEEEEEeccCCCCCcCCchh-HhhhcC---C-CCCCCEEEE
Q 002154 243 IIEALKPGS---AKELVEFQSLMQHIQEYVVE------GEKFLLVLDDVWNEDYGKWEP-FYNCLK---S-SPHGSKLLI 308 (959)
Q Consensus 243 i~~~l~~~~---~~~~~~~~~~~~~l~~~~l~------~k~~LlVlDdv~~~~~~~~~~-l~~~l~---~-~~~gs~iiv 308 (959)
|.+++.... .....+..+...++... ++ +-+++.|+|+.+-.-.-.-.. +...|. . ..+-+-|-+
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~-L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEA-LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHH-HhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 555543111 11111222222333333 22 236788888763321111111 222222 1 234455668
Q ss_pred eccchhHH-------HhhcccceEecCCCChhhhHHHHHHhh
Q 002154 309 TTRKETVA-------LIMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 309 Ttr~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
|||-.... .....-.++-+++++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 88864322 222222355567788888888887765
No 226
>PRK07261 topology modulation protein; Provisional
Probab=96.55 E-value=0.008 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 227
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00044 Score=80.70 Aligned_cols=61 Identities=33% Similarity=0.303 Sum_probs=35.6
Q ss_pred ccCCccEEeeccCCCccc--cchhhccCCCCcEEecCCC-cCCcccc----hhhhccccCCeeecCCc
Q 002154 613 KLLHLKYLSLAHQEAIER--LPEALCELYNLERLNVSGC-SHLRELP----RGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~-~~l~~lp----~~i~~L~~L~~L~l~~~ 673 (959)
.++.|+.|.+.++..+.. +-......++|+.|++++| ......+ .....+.+|++|++..|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 367777777777765655 3345667788888888763 2222211 12233456666666655
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.0036 Score=67.39 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
..+.++|..|+|||.||..+++.. ...-..++++++. +++..+...-. .. ..+.... +.. +.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~-~~---~~~~~~~---~~~--l~- 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRF-NN---DKELEEV---YDL--LI- 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHh-cc---chhHHHH---HHH--hc-
Confidence 669999999999999999999852 2222245666643 23333322211 11 0111111 222 22
Q ss_pred cEEEEEeccCCCCCcCCchh--HhhhcCCC-CCCCEEEEeccc
Q 002154 273 EKFLLVLDDVWNEDYGKWEP--FYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 312 (959)
.-=||||||+.......|.. +...+... ..+..+||||..
T Consensus 246 ~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22489999996654444432 33333322 234568888874
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.019 Score=62.03 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=48.3
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HHHh-hcccceEecCCCChhhhHHHHHHh
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VALI-MGSTQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
+++-++|+|++...+...-..+...+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4455666788877666666667777766555676777777643 3322 223568899999999998888653
No 230
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.48 E-value=0.0099 Score=61.17 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 239 (959)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35679999999999999999888764 22334567899887 5555443
No 231
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.016 Score=63.65 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=84.3
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc-------------------ccceeE
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR-------------------NFQKRI 226 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 226 (959)
.++|-+....++..+..... .....+.++|+.|+||||+|..+.+..--.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45677788888888886432 1334699999999999999988876411000 112233
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCC
Q 002154 227 WVCVSEPFD---EFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHG 303 (959)
Q Consensus 227 wv~v~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 303 (959)
.++-+.... ..+..+++.+... .....++.-++++|++...+.++-..+...+......
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~------------------~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLS------------------ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhc------------------cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 444333332 2333333333332 0001357789999999877666666677777777778
Q ss_pred CEEEEeccch-hHHHh-hcccceEecCC
Q 002154 304 SKLLITTRKE-TVALI-MGSTQVISVNE 329 (959)
Q Consensus 304 s~iivTtr~~-~v~~~-~~~~~~~~l~~ 329 (959)
+.+|++|... .+... -.....+++.+
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCC
Confidence 8888888742 22221 12245666766
No 232
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.079 Score=59.79 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
..++++|+|++|+||||++.++......+.....+..++.... ....+.++.....++. ......+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv-~v~~a~d~~~L~~aL~~-- 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGI-AVHEADSAESLLDLLER-- 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCc-eeEecCcHHHHHHHHHH--
Confidence 3579999999999999999888763211111223444544221 1122233333333321 11112233344444443
Q ss_pred hcCcEEEEEeccCCC
Q 002154 270 VEGEKFLLVLDDVWN 284 (959)
Q Consensus 270 l~~k~~LlVlDdv~~ 284 (959)
+. ..=+|++|....
T Consensus 426 l~-~~DLVLIDTaG~ 439 (559)
T PRK12727 426 LR-DYKLVLIDTAGM 439 (559)
T ss_pred hc-cCCEEEecCCCc
Confidence 33 345788898743
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.40 E-value=0.009 Score=60.68 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=36.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..-.++.|+|++|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999888763 323346788999876 66655444
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0039 Score=64.78 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
+..-+.++|.+|+|||.||..+.++. ...=-.+.++++. +++.++...... ......+.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~~------el~~~Lk~~~~~---------~~~~~~l~~~-l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITAP------DLLSKLKAAFDE---------GRLEEKLLRE-L 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEHH------HHHHHHHHHHhc---------CchHHHHHHH-h
Confidence 45568899999999999999999953 3222234566543 456666555541 1112222221 1
Q ss_pred cCcEEEEEeccCCCCCcCCchh
Q 002154 271 EGEKFLLVLDDVWNEDYGKWEP 292 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~~~~~~ 292 (959)
.+-=||||||+.......|..
T Consensus 166 -~~~dlLIiDDlG~~~~~~~~~ 186 (254)
T COG1484 166 -KKVDLLIIDDIGYEPFSQEEA 186 (254)
T ss_pred -hcCCEEEEecccCccCCHHHH
Confidence 233489999998766666653
No 235
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.37 E-value=0.012 Score=68.34 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=36.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++|.+..++.+...+... ...-|.|+|+.|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999998876432 335678999999999999999976
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.012 Score=58.43 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=88.3
Q ss_pred cccccchhHHH---HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKN---ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
.+++|.++.+. -|+++|..+..=++-.++-|..+|++|.|||.+|+.+.+.. +..| +.+- ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEec-------hHH
Confidence 46889887654 35666655432234557889999999999999999999953 3223 2111 111
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC--------CcCCchhHhhhcC----C--CCCCCEEE
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE--------DYGKWEPFYNCLK----S--SPHGSKLL 307 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~----~--~~~gs~ii 307 (959)
-|.+..+ +-...+..+.+..-+.-++++.+|.+... -..+...+..+|. . .+.|...|
T Consensus 187 liGehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 LIGEHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1222222 11223333444334557899999987321 1122333333332 1 23466666
Q ss_pred EeccchhHHHh-hcc--cceEecCCCChhhhHHHHHHhh
Q 002154 308 ITTRKETVALI-MGS--TQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 308 vTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
-.|.+...... +.. ...++...-+++|-.+++..++
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 66666543322 111 3456666667778777777766
No 237
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.015 Score=59.16 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC-----CCCHHHHHHHHHHHhCCCC-----CcccccHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE-----PFDEFRIARAIIEALKPGS-----AKELVEFQS 260 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 260 (959)
+-.+++|||..|+|||||++.+.. ....-...++....+ .....+-..++++.++... .+...+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456899999999999999999997 333333344443221 1223344556666655322 112223344
Q ss_pred HHHHHHHHHhcCcEEEEEeccCCCC-CcCCchhHhhhcCC--CCCCCEEEEeccchhHHHhhcc
Q 002154 261 LMQHIQEYVVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKS--SPHGSKLLITTRKETVALIMGS 321 (959)
Q Consensus 261 ~~~~l~~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 321 (959)
.++....+++.-++-++|.|+.-+. +...-.++...+.. ...|-..++.|.+-.++..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 4554444447788999999986332 11111234444433 2347778999998888877644
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.33 E-value=0.013 Score=56.78 Aligned_cols=40 Identities=33% Similarity=0.374 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD 235 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 235 (959)
++.|+|++|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999874 222334567887766543
No 239
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.32 E-value=0.042 Score=62.54 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=89.4
Q ss_pred cccccchhHHHHHHHHHhc---c-CCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLC---E-SSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 240 (959)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 3577776666555543211 0 0001234577899999999999999999984 22222 1122111
Q ss_pred HHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-------cCCc-h----hHhhhcCCCCCCCEEEE
Q 002154 241 RAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-------YGKW-E----PFYNCLKSSPHGSKLLI 308 (959)
Q Consensus 241 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-------~~~~-~----~l~~~l~~~~~gs~iiv 308 (959)
+..... + .+...+.+.+... -...+++|++|++.... ...+ . .+...+.....+.-||.
T Consensus 295 --l~~~~v-G-----ese~~l~~~f~~A-~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 --LFGGIV-G-----ESESRMRQMIRIA-EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred --hccccc-C-----hHHHHHHHHHHHH-HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 111000 0 1112222233222 34578999999985310 0001 1 12222222233444566
Q ss_pred eccchh-HHHhh----cccceEecCCCChhhhHHHHHHhhccCCCC-CCCchHHHHHHHHHHhcCCch
Q 002154 309 TTRKET-VALIM----GSTQVISVNELSEMECWSVFESLAFFGKSM-QERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 309 Ttr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~G~P 370 (959)
||.+.. +...+ .-...+.++.-+.++-.++|..+....... ....++. .+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~----~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIK----KLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHH----HHHhhcCCCC
Confidence 776532 11111 124577888888888888888776432211 1122233 5666766643
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.31 E-value=0.037 Score=67.55 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=93.2
Q ss_pred cccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|.+..+++|.+.+..+-.. +....+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 35778888877777765421100 1123456889999999999999999985 33333 222211
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC------Cc-CC-----chhHhhhcCC--CCCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE------DY-GK-----WEPFYNCLKS--SPHG 303 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~------~~-~~-----~~~l~~~l~~--~~~g 303 (959)
+++.... + .....+...+... -...+.+|++|++..- .. .. ...+...+.. ...+
T Consensus 522 ----~l~~~~v-G-----ese~~i~~~f~~A-~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ----EILSKWV-G-----ESEKAIREIFRKA-RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ----HHhhccc-C-----cHHHHHHHHHHHH-HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1111110 0 1111222223332 4567899999998431 00 01 1122233332 1234
Q ss_pred CEEEEeccchhHHH-hh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 304 SKLLITTRKETVAL-IM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 304 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.-||.||....... .+ .-...+.++..+.++-.++|+.+..... .....++. .+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHcCCCC
Confidence 44566665543221 11 1245788888888888888876543211 11222333 5777787744
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.31 E-value=0.0027 Score=57.98 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 242
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.033 Score=56.74 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=69.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcc-ccc---c-------c---ceeEEEEe----CCCC--CH---------------
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDS-VKR---N-------F---QKRIWVCV----SEPF--DE--------------- 236 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------F---~~~~wv~v----~~~~--~~--------------- 236 (959)
-.+++|+|+.|.|||||.+.+..-.. .++ . + ..+.||.= ...| ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37899999999999999999977211 000 0 1 12345431 1111 11
Q ss_pred -------HHHHHHHHHHhCCC----CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC----CCcCCchhHhhhcCCCC
Q 002154 237 -------FRIARAIIEALKPG----SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN----EDYGKWEPFYNCLKSSP 301 (959)
Q Consensus 237 -------~~~~~~i~~~l~~~----~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~----~~~~~~~~l~~~l~~~~ 301 (959)
.+...+.++.++.. ......+-.+.++.+..++|-.++=|+|||+--. ......-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 24444555555421 1223334456666666666888999999997422 2222222333333333
Q ss_pred CCCEEEEeccchhHH
Q 002154 302 HGSKLLITTRKETVA 316 (959)
Q Consensus 302 ~gs~iivTtr~~~v~ 316 (959)
|..||++|.+-...
T Consensus 189 -g~tIl~vtHDL~~v 202 (254)
T COG1121 189 -GKTVLMVTHDLGLV 202 (254)
T ss_pred -CCEEEEEeCCcHHh
Confidence 88899999885444
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.039 Score=59.74 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=53.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
..++|+++|++|+||||++..++.... ...+ .+..++.... ....+-++...+.++.. .....+...+...+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgip-v~v~~d~~~L~~aL~~l- 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFE-VIAVRDEAAMTRALTYF- 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCc-EEecCCHHHHHHHHHHH-
Confidence 458999999999999999999986321 1122 2334544322 12233334444444311 11123444555555443
Q ss_pred hc-CcEEEEEeccCCCCC--cCCchhHhhhcC
Q 002154 270 VE-GEKFLLVLDDVWNED--YGKWEPFYNCLK 298 (959)
Q Consensus 270 l~-~k~~LlVlDdv~~~~--~~~~~~l~~~l~ 298 (959)
-. .+.=++++|-..... ......+...+.
T Consensus 316 k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 11 123477788775432 222444444443
No 244
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.22 E-value=0.039 Score=55.26 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=35.4
Q ss_pred hcCcEEEEEeccC-CCCCcCCchhHhhhcCCC--CCCCEEEEeccchhHHHhhcccceEec
Q 002154 270 VEGEKFLLVLDDV-WNEDYGKWEPFYNCLKSS--PHGSKLLITTRKETVALIMGSTQVISV 327 (959)
Q Consensus 270 l~~k~~LlVlDdv-~~~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~l 327 (959)
+-..+-+|+-|+- .+-|...-+.+...+... ..|..||+.|.+..+|..+ .+.+.+
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 6677888888864 222223334455555543 3478899999999999864 334444
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.031 Score=68.24 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=92.2
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|.+..+++|.+++...-. -+-...+.|.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 3588999999998887643211 01123467889999999999999999884 32222 222211
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc------C-----CchhHhhhcCCC-CCCCE
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY------G-----KWEPFYNCLKSS-PHGSK 305 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~ 305 (959)
++. .... ......+...+... ....+.+|++||+..... . ....+...+... ..+..
T Consensus 247 ~i~----~~~~------g~~~~~l~~lf~~a-~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKYY------GESEERLREIFKEA-EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----cccc------cHHHHHHHHHHHHH-HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 0000 01112233333333 455678999999843110 0 112233333322 22333
Q ss_pred EEE-eccchh-HHHhhc----ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh
Q 002154 306 LLI-TTRKET-VALIMG----STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL 371 (959)
Q Consensus 306 iiv-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 371 (959)
+|+ ||.... +...+. -...+.+...+.++-.+++....-...- ..... ...+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~----l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVD----LDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccC----HHHHHHhCCCCCH
Confidence 444 444322 211111 1346777777888878887754421111 11122 2367788887543
No 246
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.19 E-value=0.004 Score=70.14 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=40.5
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+++|.++.+++|++.|......-...-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999443222234567999999999999999999987
No 247
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.17 E-value=0.0022 Score=60.31 Aligned_cols=89 Identities=24% Similarity=0.171 Sum_probs=48.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcE
Q 002154 195 ISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEK 274 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~ 274 (959)
|.++|+.|+|||+||+.+++. ... ...-+.++...+..+++...--. .......... +... . .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~---l~~a-----~-~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGP---LVRA-----M-RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-C---CCTT-----H-HEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-cccccccccc---cccc-----c-cce
Confidence 679999999999999999983 211 22346677777776665433211 1010000000 0000 1 278
Q ss_pred EEEEeccCCCCCcCCchhHhhhcC
Q 002154 275 FLLVLDDVWNEDYGKWEPFYNCLK 298 (959)
Q Consensus 275 ~LlVlDdv~~~~~~~~~~l~~~l~ 298 (959)
.++|||++...+...+..+...+.
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHHS
T ss_pred eEEEECCcccCCHHHHHHHHHHHh
Confidence 999999997555444444544443
No 248
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.17 E-value=0.032 Score=54.36 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=63.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC---cccccc---cc--eeEEEEeCCCCCHHHHHHHHHHHhCCCC-----Cccccc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN---DSVKRN---FQ--KRIWVCVSEPFDEFRIARAIIEALKPGS-----AKELVE 257 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---F~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~ 257 (959)
.-.+++|+|+.|+|||||.+.+..+ ..+... |. ...|+ .+ .+.+..+.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 3468999999999999999988632 111111 11 12232 21 34455554221 111122
Q ss_pred HHHHHHH-HHHHHhcCc--EEEEEeccCCC-CCcCCchhHhhhcCCC-CCCCEEEEeccchhHHHhhcccceEec
Q 002154 258 FQSLMQH-IQEYVVEGE--KFLLVLDDVWN-EDYGKWEPFYNCLKSS-PHGSKLLITTRKETVALIMGSTQVISV 327 (959)
Q Consensus 258 ~~~~~~~-l~~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 327 (959)
..+.++. +... +-.+ +-++++|+.-. -+....+.+...+... ..|..||++|.+...... ..+.+.+
T Consensus 90 gGq~qrl~lara-l~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASE-LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHH-HhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2222222 2222 4445 67888898633 2223333444444332 246778889988766542 3444444
No 249
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.12 Score=55.11 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=41.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 240 (959)
+.++-..+....+..++.. .+.|.|.|+.|+||||+|+.+... ....| +.|.++...+..+++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~~---~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWPC---VRVNLDSHVSRIDLV 107 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCCe---EEEEecCCCChhhcC
Confidence 3455555566777777742 245899999999999999999883 33222 355555554444333
No 250
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.10 E-value=0.038 Score=56.91 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=54.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEeCCCCCHHHHHHHHHHHhCCCC--------Cccc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF------QKRIWVCVSEPFDEFRIARAIIEALKPGS--------AKEL 255 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--------~~~~ 255 (959)
..-.++.|+|.+|+|||+||..++... ...- ..++|++....++...+. ++........ ....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 356799999999999999998887532 1122 456899988777765543 3333322110 0111
Q ss_pred ccHHHHHHHHHHHH---hcCcEEEEEeccCC
Q 002154 256 VEFQSLMQHIQEYV---VEGEKFLLVLDDVW 283 (959)
Q Consensus 256 ~~~~~~~~~l~~~~---l~~k~~LlVlDdv~ 283 (959)
.+.+++...+.... -..+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 23444444444431 13455689999873
No 251
>PRK06696 uridine kinase; Validated
Probab=96.10 E-value=0.007 Score=62.01 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=35.8
Q ss_pred cchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 169 GRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 169 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|++-+++|.+.+.... .++..+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677888888886532 346789999999999999999999874
No 252
>PHA02244 ATPase-like protein
Probab=96.08 E-value=0.027 Score=60.53 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-|.|+|+.|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999883
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.04 E-value=0.0056 Score=57.36 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=62.3
Q ss_pred ccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEeCCCCCHHHHHHHHHHH
Q 002154 168 FGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV-KRNFQKRIWVCVSEPFDEFRIARAIIEA 246 (959)
Q Consensus 168 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 246 (959)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|.. +....
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh--------------
Confidence 5777778888877765432 3456789999999999999999875222 112211 00000
Q ss_pred hCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC-CCCCEEEEeccc
Q 002154 247 LKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 247 l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 312 (959)
.+ .+.+ +. .+.-.|+|+|+..-+.+....+...+... ....|+|.||+.
T Consensus 60 ---------~~----~~~l-~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 ---------LP----AELL-EQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------TC----HHHH-HH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------Cc----HHHH-HH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 1111 11 13445778988665555555666666543 567899999975
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.02 E-value=0.034 Score=54.81 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---eCCCCCHHHHHH------HHHHHhCCCC----Cccccc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC---VSEPFDEFRIAR------AIIEALKPGS----AKELVE 257 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~~------~i~~~l~~~~----~~~~~~ 257 (959)
.-.+++|+|+.|.|||||++.++... ......+++. +. ..+...... ++++.++... .....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34689999999999999999999842 2234444442 22 112222111 1344443211 111122
Q ss_pred HHHHHHH-HHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCC-CC-CCEEEEeccchhHHH
Q 002154 258 FQSLMQH-IQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSS-PH-GSKLLITTRKETVAL 317 (959)
Q Consensus 258 ~~~~~~~-l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 317 (959)
..+.++. +.+. +-..+-++++|+.-. -+....+.+...+... .. +..||++|.+.....
T Consensus 100 ~G~~qrl~lara-l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARA-LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHH-HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2222222 2233 556778899998743 2233344454544432 22 667888888766543
No 255
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00092 Score=66.80 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch--h
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE--A 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~--~ 634 (959)
+.+++.|++.|+....+ ..+.+|+.|.||.|+- |.|..+ ..+..++.|+.|.|+.|. |..+-+ .
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSv-------NkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSV-------NKISSL-APLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEeec-------cccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 33445555555542221 1245566666666665 445544 235556666666666665 554433 3
Q ss_pred hccCCCCcEEecCCCc
Q 002154 635 LCELYNLERLNVSGCS 650 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~ 650 (959)
+.+|++|++|.|..|+
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 4555666666655544
No 256
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.99 E-value=0.014 Score=66.60 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=59.6
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
.+..+++.+.|++|+||||||+.++++. .|. ++=|+.|+.-+...+-..|...+......+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~-------------- 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLD-------------- 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHHhhccccc--------------
Confidence 4567899999999999999999999852 232 567888887777766666655554111100
Q ss_pred HhcCcEEEEEeccCCCCCcCCchhHhhhcC
Q 002154 269 VVEGEKFLLVLDDVWNEDYGKWEPFYNCLK 298 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 298 (959)
..+++.-||+|.+.-......+.++..+.
T Consensus 384 -adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred -cCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 23678889999996544333444444443
No 257
>PRK04296 thymidine kinase; Provisional
Probab=95.98 E-value=0.01 Score=58.94 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-ccccHHHHHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAK-ELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~~l~ 271 (959)
.++.|+|+.|.||||+|...... ...+-..++.+. ..++.+.....++..++..... .....+.+...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 47889999999999999887763 322322333331 1112222233344444311111 11233444444433 22
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET 314 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 314 (959)
++.-+||+|.+.--+.++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35558999999543222222233332 345788999988743
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.96 E-value=0.0099 Score=57.02 Aligned_cols=92 Identities=29% Similarity=0.371 Sum_probs=69.5
Q ss_pred HhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc--CCCcCCCCCCcCCCcceeecCccCceEeCc-c
Q 002154 775 LLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR--NCEHLPPLGKLPSLEDLWIQGMKSVKRVGN-E 851 (959)
Q Consensus 775 ~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~--~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~-~ 851 (959)
.++.+..++.|..|.+.+|.++. +.|..-..+++|+.|.|.+|. .+.++.++..+|.|++|.+-+.+ +.+-.. .
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR 132 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYR 132 (233)
T ss_pred hcccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCce
Confidence 34567778899999999999888 756666678999999999986 45678899999999999998755 222111 1
Q ss_pred ccCCCCCCCCccccCCCccceeeeccc
Q 002154 852 FLGVESDTDGSSVIAFPKLRRLRFVCM 878 (959)
Q Consensus 852 ~~~~~~~~~~~~~~~fp~L~~L~l~~~ 878 (959)
.+- +-.+|+|+.|++...
T Consensus 133 ~yv---------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 LYV---------LYKLPSLRTLDFQKV 150 (233)
T ss_pred eEE---------EEecCcceEeehhhh
Confidence 111 227899999999874
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.95 E-value=0.02 Score=56.92 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=50.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCC--cccccHHH-HHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE-PFDEFRIARAIIEALKPGSA--KELVEFQS-LMQHIQE 267 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~~l~~ 267 (959)
++++.++|+.|+||||.+.+++... +..-..+..++... .....+.++..++.++.... ....+... +.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999998887643 22333455676543 23456777788888762211 11112222 3333333
Q ss_pred HHhcCcEEEEEeccCC
Q 002154 268 YVVEGEKFLLVLDDVW 283 (959)
Q Consensus 268 ~~l~~k~~LlVlDdv~ 283 (959)
. -.++.=++++|-..
T Consensus 79 ~-~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 F-RKKGYDLVLIDTAG 93 (196)
T ss_dssp H-HHTTSSEEEEEE-S
T ss_pred H-hhcCCCEEEEecCC
Confidence 2 22233477778664
No 260
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.94 E-value=0.022 Score=59.80 Aligned_cols=133 Identities=24% Similarity=0.253 Sum_probs=72.3
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC-cccccccceeE----EEEeCCCC-------
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN-DSVKRNFQKRI----WVCVSEPF------- 234 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~v~~~~------- 234 (959)
+-+|..+..--+++|+.+ ....|.+.|.+|.|||.||-...=. ...++.|..++ -+.+.+.-
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 445777777778888654 5799999999999999988443211 11233343322 12233221
Q ss_pred --CHHHHHHHHHHHh---CCCCCcccccHHHHHHHHHHHH--------hcCc---EEEEEeccCCCCCcCCchhHhhhcC
Q 002154 235 --DEFRIARAIIEAL---KPGSAKELVEFQSLMQHIQEYV--------VEGE---KFLLVLDDVWNEDYGKWEPFYNCLK 298 (959)
Q Consensus 235 --~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~l~~~~--------l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~ 298 (959)
.+.--++.|...+ ....... .+.+...+.+.. .+|+ .-++|+|.+.+-+. ..+...+.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTilt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHH
Confidence 1111223333322 1111111 222222211110 3343 45899999977554 34556666
Q ss_pred CCCCCCEEEEecc
Q 002154 299 SSPHGSKLLITTR 311 (959)
Q Consensus 299 ~~~~gs~iivTtr 311 (959)
..+.||||+.|-.
T Consensus 374 R~G~GsKIVl~gd 386 (436)
T COG1875 374 RAGEGSKIVLTGD 386 (436)
T ss_pred hccCCCEEEEcCC
Confidence 7789999999875
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.92 E-value=0.039 Score=52.02 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHH-HHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQ-HIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~l~~~~ 269 (959)
.-.+++|+|..|.|||||++.+..... .....+|+.-.. .+. .... .+..+.++ .+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~--~~~~-lS~G~~~rv~lara- 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIG--YFEQ-LSGGEKMRLALAKL- 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEE--EEcc-CCHHHHHHHHHHHH-
Confidence 346899999999999999999988422 223334332100 000 0000 11112211 12222
Q ss_pred hcCcEEEEEeccCCC-CCcCCchhHhhhcCCCCCCCEEEEeccchhHHH
Q 002154 270 VEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL 317 (959)
Q Consensus 270 l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 317 (959)
+-.++-++++|+.-. -|......+...+... +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 455677888998632 2333344455555433 346888887765553
No 262
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.92 E-value=0.02 Score=56.39 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 263
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0015 Score=65.93 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=81.7
Q ss_pred HhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhC-CCCCCCceEEEeeeCCCCCCCCcChhhcccccc
Q 002154 734 RRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEAL-GPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLR 812 (959)
Q Consensus 734 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~ 812 (959)
..+.+.++++|+.|+|+++.+.. ....+ -|..+|+.|.+.|....-... .+.+..+|.++
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s------------------~I~~lp~p~~nl~~lVLNgT~L~w~~~-~s~l~~lP~vt 149 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSS------------------DIKSLPLPLKNLRVLVLNGTGLSWTQS-TSSLDDLPKVT 149 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCC------------------ccccCcccccceEEEEEcCCCCChhhh-hhhhhcchhhh
Confidence 34456678888888888776321 12233 356688888887644322112 33344677777
Q ss_pred eeeecCcc----CCC-----c----CCCCCC-----------------cCCCcceeecCccCceEeCccccCCCCCCCCc
Q 002154 813 DLSLNWWR----NCE-----H----LPPLGK-----------------LPSLEDLWIQGMKSVKRVGNEFLGVESDTDGS 862 (959)
Q Consensus 813 ~L~L~~~~----~~~-----~----l~~l~~-----------------l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 862 (959)
.|+++.|. +.. . +..+.. +|++..+.++.|+ ++... ++.
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s----------~ek 218 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES----------SEK 218 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh----------hcc
Confidence 77777662 010 0 111222 3344444444433 22221 222
Q ss_pred cccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCC
Q 002154 863 SVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKAL 914 (959)
Q Consensus 863 ~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 914 (959)
+...||.+-.|.|+. +++.+|.... ....||+|..|.+.+.|-...+
T Consensus 219 ~se~~p~~~~LnL~~-~~idswasvD----~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGA-NNIDSWASVD----ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCCCCcchhhhhcc-cccccHHHHH----HHcCCchhheeeccCCcccccc
Confidence 344788888888876 6777776522 2456899999999888766544
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.86 E-value=0.016 Score=57.00 Aligned_cols=36 Identities=31% Similarity=0.583 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWV 228 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 228 (959)
...+|.++|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999983 44445555555
No 265
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.83 E-value=0.01 Score=56.95 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=44.1
Q ss_pred CCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc--ccccccCCccEEeeccCCCccccc
Q 002154 555 KGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP--ENIEKLLHLKYLSLAHQEAIERLP 632 (959)
Q Consensus 555 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp--~~i~~l~~L~~L~L~~~~~i~~lp 632 (959)
+.+++|.+|.+..|.. ..+-|..-.-+++|.+|.|.+ +.+..+- ..+..++.|+||.+-+|. ++..+
T Consensus 61 p~l~rL~tLll~nNrI---t~I~p~L~~~~p~l~~L~Ltn-------Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~ 129 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRI---TRIDPDLDTFLPNLKTLILTN-------NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKK 129 (233)
T ss_pred CCccccceEEecCCcc---eeeccchhhhccccceEEecC-------cchhhhhhcchhccCCccceeeecCCc-hhccc
Confidence 3666666666666653 222333233445566666666 4444431 224456666666666665 54443
Q ss_pred h----hhccCCCCcEEecCC
Q 002154 633 E----ALCELYNLERLNVSG 648 (959)
Q Consensus 633 ~----~i~~L~~L~~L~l~~ 648 (959)
. -+.++++|++||+++
T Consensus 130 ~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CceeEEEEecCcceEeehhh
Confidence 2 245566666666554
No 266
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.055 Score=55.79 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=46.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVK--RNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
-++|.++|++|.|||+|.+.+++...++ +.|....-+-+.. ..++.+.+.+-+ .....+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg-------KlV~kmF~kI~EL- 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG-------KLVAKMFQKIQEL- 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh-------hHHHHHHHHHHHH-
Confidence 4889999999999999999999975443 4444444444332 123333322221 2233444555554
Q ss_pred hcCc--EEEEEeccC
Q 002154 270 VEGE--KFLLVLDDV 282 (959)
Q Consensus 270 l~~k--~~LlVlDdv 282 (959)
++++ -+.+.+|.|
T Consensus 245 v~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEV 259 (423)
T ss_pred HhCCCcEEEEEeHHH
Confidence 4433 356677888
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.018 Score=67.77 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc---cccccc-ceeEEEEeCCCCCHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND---SVKRNF-QKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~~~~ 241 (959)
.++||++|++++++.|..... +- -.++|.+|||||++|.-++..- .|-... +..++.-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL------------ 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL------------ 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe------------
Confidence 489999999999999975431 22 2478999999999886555420 111111 1111110
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC---------CcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE---------DYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
++..-+. +.... .+.++..+.+.+..-+.++.+|++|.+... ..++-.-+..+|..+. --.|=.||-+
T Consensus 233 D~g~LvA-GakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 233 DLGSLVA-GAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred cHHHHhc-ccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 1111111 22212 223333333333324445899999998431 1222222334443332 2234455544
Q ss_pred hhHHHh-------hcccceEecCCCChhhhHHHHHHh
Q 002154 313 ETVALI-------MGSTQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 313 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
+ .-.. ....+.+.+..-+.+++..++.-.
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 2 2211 234678889999999988887643
No 268
>PRK13695 putative NTPase; Provisional
Probab=95.79 E-value=0.0088 Score=58.66 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.78 E-value=0.03 Score=59.44 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVK-RNFQKRIWVCVSEPF-DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
..+++.|+|+.|+||||++..++.....+ +.+ .+..|+..... ...+.+....+.++.. .....+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p-~~~~~~~~~l~~~l~~- 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVP-VKVARDPKELRKALDR- 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCc-eeccCCHHHHHHHHHH-
Confidence 46799999999999999998887743222 112 34455544311 1223333334433311 1112233444444443
Q ss_pred HhcCcEEEEEeccC
Q 002154 269 VVEGEKFLLVLDDV 282 (959)
Q Consensus 269 ~l~~k~~LlVlDdv 282 (959)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 346677754
No 270
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.1 Score=59.39 Aligned_cols=56 Identities=30% Similarity=0.310 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF 222 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 222 (959)
.++=|-++-++++.+.+.-+-.. +-..++-|..+|++|+|||++|+.+.+. .+..|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 45556666666666554332110 2246788999999999999999999994 34444
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.74 E-value=0.046 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|.|||||++.+..-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999999874
No 272
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.73 E-value=0.069 Score=62.13 Aligned_cols=136 Identities=12% Similarity=0.170 Sum_probs=75.9
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+.+.... .-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHh
Confidence 35699999999999988876432 4457889999999999999999874221 111234555554332 1111122
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEeccc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITTRK 312 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 312 (959)
+.... +...+... .....+.. ...=.|+||++..-.......+...+..+. ...|||.||..
T Consensus 259 fG~~~-g~~~ga~~--~~~g~~~~----a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVK-GAFTGAIS--NRSGKFEL----ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccc-cccCCCcc--cCCcchhh----cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11111 10000000 00001111 122347899997766555666766665432 24588888865
Q ss_pred h
Q 002154 313 E 313 (959)
Q Consensus 313 ~ 313 (959)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 273
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.71 E-value=0.034 Score=57.63 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEeCCCCC-HHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF-QKRIWVCVSEPFD-EFRIARAIIE 245 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~-~~~~~~~i~~ 245 (959)
+-+.++|+|..|+||||||+.+++. ++.+| +..+++-+.+... ..++.+++..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 4467899999999999999999984 44455 3455666766543 4455555543
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.03 Score=61.01 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=49.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE-PFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
.-+++.++|+.|+||||++.++......+.....+..++... .....+.++...+.++. ......+...+...+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv-~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV-PVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC-ceEecCCcccHHHHHHH--
Confidence 347999999999999999999987421111123445555332 22344556666666652 21112222233334433
Q ss_pred hcCcEEEEEeccCCC
Q 002154 270 VEGEKFLLVLDDVWN 284 (959)
Q Consensus 270 l~~k~~LlVlDdv~~ 284 (959)
+.++ =++++|....
T Consensus 213 l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNK-HMVLIDTIGM 226 (374)
T ss_pred hcCC-CEEEEcCCCC
Confidence 3444 4566898854
No 275
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.67 E-value=0.058 Score=63.36 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=74.1
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS-VKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+++... ..+.| +.|++..-. ...+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~--~~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALS--ETLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCC--HHHHH
Confidence 345799999999999888765432 345678999999999999999997522 12222 444444332 12222
Q ss_pred H-HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEe
Q 002154 242 A-IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLIT 309 (959)
Q Consensus 242 ~-i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 309 (959)
. ++..-. +...+... .....+ .....-.|+||++..-.......+...+..+. ...+||.|
T Consensus 265 ~~lfg~~~-~~~~~~~~--~~~g~~----~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 265 SELFGHEK-GAFTGAIA--QRKGRF----ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAA 337 (534)
T ss_pred HHHcCCCC-CccCCCCc--CCCCcc----cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEe
Confidence 1 111000 00000000 000001 11234468899997766555666766665432 13588888
Q ss_pred ccc
Q 002154 310 TRK 312 (959)
Q Consensus 310 tr~ 312 (959)
|..
T Consensus 338 s~~ 340 (534)
T TIGR01817 338 TNR 340 (534)
T ss_pred CCC
Confidence 754
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.66 E-value=0.014 Score=62.21 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----CcccccHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS----AKELVEFQSLMQHI 265 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 265 (959)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+..++... .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35679999999999999999887753 22334567899988777653 233333110 11122344455555
Q ss_pred HHHHhcCcEEEEEeccCC
Q 002154 266 QEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~ 283 (959)
....-.+..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 444223456799999873
No 277
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.023 Score=54.89 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=60.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCcccccHHHHHHH-HHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP--FDEFRIARAIIEALKPGSAKELVEFQSLMQH-IQEY 268 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-l~~~ 268 (959)
-.+++|+|+.|.|||||.+.++... ......+++.-... .+..+..+ ..+. .... .+..+.++. +.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~--~~~q-LS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIA--MVYQ-LSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeE--EEEe-cCHHHHHHHHHHHH
Confidence 4689999999999999999998742 23344455432111 11111111 0111 0000 222222222 2223
Q ss_pred HhcCcEEEEEeccCCC-CCcCCchhHhhhcCCC-CCCCEEEEeccchhHHH
Q 002154 269 VVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSS-PHGSKLLITTRKETVAL 317 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 317 (959)
+-.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 97 -l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 -LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 556778888998743 2333334454554432 33667888888765443
No 278
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.037 Score=60.78 Aligned_cols=53 Identities=32% Similarity=0.355 Sum_probs=39.0
Q ss_pred ccccch---hHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCccc
Q 002154 166 EIFGRQ---KEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV 218 (959)
Q Consensus 166 ~~~Gr~---~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 218 (959)
++-|-| .|+++|+++|..+.. -++.-++-|.++|++|.|||-||+.|+.+..+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 455655 567888888865531 12344678999999999999999999986433
No 279
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.64 E-value=0.045 Score=55.97 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD 235 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 235 (959)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999888763 222234567887765554
No 280
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.62 E-value=0.015 Score=62.05 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----CcccccHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS----AKELVEFQSLMQHI 265 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 265 (959)
+.-+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++... .......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999887663 22333456799887766653 234443111 11122344445555
Q ss_pred HHHHhcCcEEEEEeccCC
Q 002154 266 QEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~ 283 (959)
....-++..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 444223556799999874
No 281
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.60 E-value=0.0088 Score=59.81 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc----ccc-------hhhccCCCCcEEecCCC
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE----RLP-------EALCELYNLERLNVSGC 649 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~----~lp-------~~i~~L~~L~~L~l~~~ 649 (959)
+..+..+..++|+|+.+- ......+...|.+-.+|+.-+++.-. .. .+| +.+-++++||+.+|+.|
T Consensus 26 l~~~d~~~evdLSGNtig--tEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG--TEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHhhcceeEEeccCCccc--HHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 345788999999993220 00012355567777889998887643 22 333 34567899999999988
Q ss_pred cCCcccchh----hhccccCCeeecCCc
Q 002154 650 SHLRELPRG----IGKLRKLMYLYNAGT 673 (959)
Q Consensus 650 ~~l~~lp~~----i~~L~~L~~L~l~~~ 673 (959)
-.-...|.. |.+-+.|.||.+++|
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecC
Confidence 755555544 556688999999888
No 282
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.57 E-value=0.029 Score=60.98 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=72.3
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIE 245 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 245 (959)
.++|+...++++.+.+..... ...-|.|+|..|+||+++|+.++..... .-...+.|++.... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999999888765432 3456889999999999999999863211 11122344554422 2222222221
Q ss_pred HhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEeccc
Q 002154 246 ALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITTRK 312 (959)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 312 (959)
.-. +...+... .....+.. ...=.|+||++..-.......+...+..+. ...+||.||..
T Consensus 80 ~~~-~~~~g~~~--~~~g~l~~----a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEA-GAFTGAQK--RHPGRFER----ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccc-cccCCccc--ccCCchhc----cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 110 00000000 00111111 123357899997766555666666664432 13588887764
No 283
>PRK08233 hypothetical protein; Provisional
Probab=95.56 E-value=0.04 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 284
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.56 E-value=0.1 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNND 216 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 216 (959)
.-..+.|+|++|.|||||.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44689999999999999999999853
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.034 Score=63.21 Aligned_cols=73 Identities=25% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF--DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
..+-|.|.|+.|+|||+||+.+++... +.+.-.+.+|+++.-. ..+.+++.+ ...+...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH------------------HHHHHHH
Confidence 456799999999999999999999644 5555556677766421 111111111 1122222
Q ss_pred HhcCcEEEEEeccCC
Q 002154 269 VVEGEKFLLVLDDVW 283 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~ 283 (959)
+.-.+-+|||||+.
T Consensus 491 -~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 -LWYAPSIIVLDDLD 504 (952)
T ss_pred -HhhCCcEEEEcchh
Confidence 56689999999983
No 286
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.045 Score=53.45 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC--CCCHHHHHHHHHHHhCCCCCccc-------ccHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE--PFDEFRIARAIIEALKPGSAKEL-------VEFQSL 261 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~ 261 (959)
.-.+++|+|+.|.|||||.+.++.-. ......+++.-.. ........+.+ ..+......-. .+..+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 34689999999999999999998842 2223333332111 00111110000 00000000000 111111
Q ss_pred HHH-HHHHHhcCcEEEEEeccCCCC-CcCCchhHhhhcCCCCCCCEEEEeccchhHHHh
Q 002154 262 MQH-IQEYVVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKSSPHGSKLLITTRKETVALI 318 (959)
Q Consensus 262 ~~~-l~~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 318 (959)
++. +... +-.++-++++|+-... |....+.+...+.....+..||++|.+......
T Consensus 103 ~rl~la~a-l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARA-LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHH-HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 211 2223 4567779999987432 222333444444433335678888888766543
No 287
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0072 Score=35.96 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=12.7
Q ss_pred CccEEeeccCCCccccchhhcc
Q 002154 616 HLKYLSLAHQEAIERLPEALCE 637 (959)
Q Consensus 616 ~L~~L~L~~~~~i~~lp~~i~~ 637 (959)
+|++|+|++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 36666666665 6666665443
No 288
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.031 Score=54.73 Aligned_cols=120 Identities=20% Similarity=0.175 Sum_probs=59.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC--CCCC--ccc--------ccHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALK--PGSA--KEL--------VEFQ 259 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~--~~~~--~~~--------~~~~ 259 (959)
-.+++|+|+.|.|||||++.++... ......+++.-....+.. ..+...+. .... ... .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4689999999999999999998742 122333443211100000 01101110 0000 000 1122
Q ss_pred HHHHH-HHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCC-CCCCEEEEeccchhHHHh
Q 002154 260 SLMQH-IQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSS-PHGSKLLITTRKETVALI 318 (959)
Q Consensus 260 ~~~~~-l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 318 (959)
+.+.. +... +-.++=++++|+.-. -|......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~lara-l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQA-LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHH-HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22222 2233 567788999998733 1222333444444432 236778888888765543
No 289
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.043 Score=61.38 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=62.4
Q ss_pred cccccchhHHHHHHHHHhccCCc------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.++-|.+..+.++.+++...... +-..++-|.++|++|+|||.||+.+.++. .-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecch-----
Confidence 45778898888888776542211 23456788999999999999999999953 3223 334322
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~ 284 (959)
+|+.... ..+.+.+.+.+.+. ...-++++++|++.-
T Consensus 258 ---eivSGvS------GESEkkiRelF~~A-~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS------GESEKKIRELFDQA-KSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC------cccHHHHHHHHHHH-hccCCeEEEeecccc
Confidence 2222222 12333444444444 667899999999843
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.48 E-value=0.085 Score=49.97 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeE--EEEeCCCCCHHHHHHHHHHHhC---CCC------Ccccc---cH
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRI--WVCVSEPFDEFRIARAIIEALK---PGS------AKELV---EF 258 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~~~~~i~~~l~---~~~------~~~~~---~~ 258 (959)
+.|-|++..|.||||+|....-. .....+...+ |+.-........+++.+ ..+. .+. ..... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 57888899999999999665542 1111222211 33333233444444443 1110 000 00001 11
Q ss_pred HHHHHHHHHHHhcCcEEEEEeccCCC---CCcCCchhHhhhcCCCCCCCEEEEeccch
Q 002154 259 QSLMQHIQEYVVEGEKFLLVLDDVWN---EDYGKWEPFYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 259 ~~~~~~l~~~~l~~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 313 (959)
....+..++.+..++-=|+|||++-. -..-..+.+...+.....+.-||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233334442234555999999732 22345567788887777788999999984
No 291
>PRK09354 recA recombinase A; Provisional
Probab=95.48 E-value=0.019 Score=61.78 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----CcccccHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS----AKELVEFQSLMQHI 265 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 265 (959)
+.-+++-|+|++|+||||||.+++.. ....-...+||+....++.. .+++++.+. .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999887763 22334567899988877753 344443210 11122344455555
Q ss_pred HHHHhcCcEEEEEeccCC
Q 002154 266 QEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~ 283 (959)
....-++..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 554233556799999884
No 292
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0014 Score=65.61 Aligned_cols=105 Identities=21% Similarity=0.183 Sum_probs=74.0
Q ss_pred ccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccch--hh
Q 002154 582 DKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPR--GI 659 (959)
Q Consensus 582 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i 659 (959)
+.+.+.+.|++.| ..+..+ ..+..|+.|++|.||-|+ |+.|-. +..+++|+.|.|+.|. +..+-+ -+
T Consensus 16 sdl~~vkKLNcwg-------~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YL 84 (388)
T KOG2123|consen 16 SDLENVKKLNCWG-------CGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYL 84 (388)
T ss_pred hHHHHhhhhcccC-------CCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 3455677788887 345544 335679999999999998 888865 8899999999999876 666643 36
Q ss_pred hccccCCeeecCCccccccCCcc-----CcCCCCCCccCceee
Q 002154 660 GKLRKLMYLYNAGTDSLRYLPAG-----IDELIRLRSVRKFVV 697 (959)
Q Consensus 660 ~~L~~L~~L~l~~~~~l~~~p~~-----i~~L~~L~~L~~~~~ 697 (959)
.+|++||.|-|..|+....-+.+ +..|++|+.|+-..+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 78889999988877544333322 455666766654443
No 293
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.43 E-value=0.016 Score=56.19 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999998763
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.42 E-value=0.078 Score=59.55 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=47.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF-DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
.+++.++|++|+||||++..+.........-..+..|+..... ...+.++...+.++... ....+...+...+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-EVVYDPKELAKALEQL-- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-EccCCHHhHHHHHHHh--
Confidence 4699999999999999998876632201222345566654321 11223333344343111 1122334455555443
Q ss_pred cCcEEEEEeccCCC
Q 002154 271 EGEKFLLVLDDVWN 284 (959)
Q Consensus 271 ~~k~~LlVlDdv~~ 284 (959)
. ..=+|++|....
T Consensus 298 ~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 R-DCDVILIDTAGR 310 (424)
T ss_pred C-CCCEEEEeCCCC
Confidence 3 345788897643
No 295
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.42 E-value=0.039 Score=57.53 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=54.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--------cccccH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVK----RNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA--------KELVEF 258 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 258 (959)
.-.+.=|+|++|+|||.|+..++-...+. +.=..++|++-...|+...+. +|++....... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45699999999999999997775432221 122458899999999887765 46665532110 011222
Q ss_pred HHH---HHHHHHHHhcCcEEEEEeccC
Q 002154 259 QSL---MQHIQEYVVEGEKFLLVLDDV 282 (959)
Q Consensus 259 ~~~---~~~l~~~~l~~k~~LlVlDdv 282 (959)
+++ ...+...+...+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 332 333333323455568888887
No 296
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.42 E-value=0.021 Score=57.81 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 297
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.18 Score=59.10 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=100.4
Q ss_pred cccccchh---HHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQK---EKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.++.|-++ |+++++++|..+.. -+..-++-+.++|++|.|||-||+.++....+ -|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 35777765 55566666654421 13345778999999999999999999995332 24555432
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc---------------CCchhHhhhcCCCCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY---------------GKWEPFYNCLKSSPHG 303 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~~~g 303 (959)
+.++.+. +. ... .++.+-...-+..+.++.+|++..... ....++..-+......
T Consensus 379 ---EFvE~~~-g~--~as----rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ---EFVEMFV-GV--GAS----RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHhc-cc--chH----HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 2223332 11 111 222222221345788999998743110 0112222222222222
Q ss_pred C-EEE-EeccchhHHHh--h--cc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 304 S-KLL-ITTRKETVALI--M--GS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 304 s-~ii-vTtr~~~v~~~--~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
. .|+ -+|+..++... + +. ...+.+..-+...-.++|..++..... ..+..++++ |+...-|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 2 233 34444333322 1 11 457778877888888999888743322 244556665 888888887544
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.38 Score=51.17 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=79.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCc--------ccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcccccHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNND--------SVKRNFQKRIWVCVSE-PFDEFRIARAIIEALKPGSAKELVEFQSL 261 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 261 (959)
-..+..++|..|+||+++|..+.+.. ....|-+...++.... ....++ .+++.+.+.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~-Ir~l~~~~~------------- 82 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSE-FLSAINKLY------------- 82 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHH-HHHHHHHhc-------------
Confidence 45677799999999999998776531 1111222233332111 111111 112222221
Q ss_pred HHHHHHHHhc-CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHHH-hhcccceEecCCCChhhhHHH
Q 002154 262 MQHIQEYVVE-GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVAL-IMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 262 ~~~l~~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~-~~~~~~~~~l~~L~~~~~~~l 338 (959)
-.... +++-++|+|++...+..+...+...+..-+.++.+|++|.+ ..+.. .......+++.++++++..+.
T Consensus 83 -----~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 83 -----FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred -----cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 11012 47778888998766666677788888887778877776654 33332 234467899999999998877
Q ss_pred HHHh
Q 002154 339 FESL 342 (959)
Q Consensus 339 f~~~ 342 (959)
+...
T Consensus 158 l~~~ 161 (299)
T PRK07132 158 LLSK 161 (299)
T ss_pred HHHc
Confidence 7653
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.028 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 300
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.37 E-value=0.07 Score=57.28 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=41.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVK----RNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-+++-|+|++|+|||+|+..++-..... +.=..++||+....|+++++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 356899999999999999997765321111 1123678999999998887654 566664
No 301
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.34 E-value=0.11 Score=50.37 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cce---eEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHH-
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSV-KRN--FQK---RIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQ- 263 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~~---~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~- 263 (959)
.-.+++|+|+.|.|||||++.+...... .+. ++. +.+ +.+..... -..+.+.+... .....+-.+.++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~-~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYP-WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhcc-CCCCCCHHHHHHH
Confidence 3468999999999999999999875221 111 111 112 22222111 01222222110 111122222222
Q ss_pred HHHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCCCCCCEEEEeccchhHHH
Q 002154 264 HIQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL 317 (959)
Q Consensus 264 ~l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 317 (959)
.+.+. +-.++=++++|+--. -|......+...+... +..||++|.+.....
T Consensus 101 ~lara-l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARL-LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHH-HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 22233 456677888897632 2222333444444432 456888888766543
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.05 Score=59.75 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...++.++|++|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998863
No 303
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.28 E-value=0.044 Score=59.54 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++|+...++++.+.+..... ...-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 47888888888877765432 3456789999999999999999864
No 304
>PRK07667 uridine kinase; Provisional
Probab=95.26 E-value=0.023 Score=56.71 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 34589999999999999999999873
No 305
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.24 E-value=0.073 Score=53.49 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---------eCCCCCHHHH--HHHHHHHhCCCCCcc
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC---------VSEPFDEFRI--ARAIIEALKPGSAKE 254 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------v~~~~~~~~~--~~~i~~~l~~~~~~~ 254 (959)
..++.+|.++||+|.||||..+.++.+...+ +....-|+ ...+.|+++. .++..++.+.++..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~--~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAK--KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhc--cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 4467789999999999999999998863322 22111222 2234455554 346777766555443
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=95.23 E-value=0.11 Score=56.24 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=47.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC--HHHHHHHHHHHhCCCCC--cccccH-HHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD--EFRIARAIIEALKPGSA--KELVEF-QSLMQHI 265 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~--~~~~~~-~~~~~~l 265 (959)
+..+|.++|+.|+||||++..++.... ...+. ++.+.. +.+. ..+.++..+..++.... ....+. ..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 578999999999999998888876322 12232 333432 2222 23345556666642211 111122 2223333
Q ss_pred HHHHhcCcEEEEEeccCCCC
Q 002154 266 QEYVVEGEKFLLVLDDVWNE 285 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~~~ 285 (959)
......+.. ++++|.....
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 332123333 8888988543
No 307
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.14 Score=51.79 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=35.0
Q ss_pred hcCcEEEEEeccCCC-CCcCCchhHhhhcCC-CCCCCEEEEeccchhHHHhhcccceEecCCCC
Q 002154 270 VEGEKFLLVLDDVWN-EDYGKWEPFYNCLKS-SPHGSKLLITTRKETVALIMGSTQVISVNELS 331 (959)
Q Consensus 270 l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~ 331 (959)
+-.++-++++|+--. -+......+...+.. ...|..||++|.+...... .+++.++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 445678999998633 222333445555543 2346678999887665543 5667766543
No 308
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.21 E-value=0.056 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.19 E-value=0.16 Score=53.14 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=65.3
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC--C-
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP--G- 250 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~--~- 250 (959)
.+.++..+... +...-++|+|+.|.|||||.+.+.... ......+++.-..-... +-..++...... .
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecc-hhHHHHHHHhcccccc
Confidence 44555555422 235789999999999999999999842 22233334321110000 011222222210 0
Q ss_pred ---CCccc-ccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHH
Q 002154 251 ---SAKEL-VEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL 317 (959)
Q Consensus 251 ---~~~~~-~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 317 (959)
...+. .+... ...+......-.+=++++|++.. .+.+..+...+. .|..+|+||....+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00000 01111 11122221334788999999843 334555555542 4778999998766644
No 310
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.17 E-value=0.022 Score=60.70 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-..+..++|+|+.|.|||.+|+.+++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999995
No 311
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.017 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.--|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999874
No 312
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.042 Score=54.42 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+.+|+|.|.+|+||||+|+.+++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999984
No 313
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.15 E-value=0.062 Score=57.88 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=40.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccc---c-ccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVK---R-NFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-.++.|+|.+|+|||||+..++...... + .-..++|++....++..+ +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 357899999999999999998886421111 1 113568999988888776 344555554
No 314
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.14 E-value=0.07 Score=57.74 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCEEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTT-LAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
+.++|.+||+.|+|||| ||+..+.-. ....=..+..|+...- -...+.++.-++-++ -+-.-..+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-vp~~vv~~~~el~~ai~~- 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-VPLEVVYSPKELAEAIEA- 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhC-CceEEecCHHHHHHHHHH-
Confidence 47999999999999995 554444421 1122234556665432 233444555555554 222333445555555554
Q ss_pred HhcCcEEEEEeccCCCCC--cCCchhHhhhcCCC
Q 002154 269 VVEGEKFLLVLDDVWNED--YGKWEPFYNCLKSS 300 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~~~--~~~~~~l~~~l~~~ 300 (959)
+++. =+|.+|-+.... ....+.+...+...
T Consensus 279 -l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 279 -LRDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred -hhcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 3344 355557765432 22333444444433
No 315
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.075 Score=55.36 Aligned_cols=91 Identities=21% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH-hCCC---CCcccccHHHHHHH
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEA-LKPG---SAKELVEFQSLMQH 264 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~-l~~~---~~~~~~~~~~~~~~ 264 (959)
-+.-+++=|+|+.|.||||+|.+++-. ....-...+|++....+++..+. ++... +..- ..........++..
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 356789999999999999999887764 33333478999999999887653 34444 3211 12222223344444
Q ss_pred HHHHHhcCcEEEEEeccCC
Q 002154 265 IQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 265 l~~~~l~~k~~LlVlDdv~ 283 (959)
+... ...+--|+|+|.+-
T Consensus 134 ~~~~-~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARS-GAEKIDLLVVDSVA 151 (279)
T ss_pred HHHh-ccCCCCEEEEecCc
Confidence 4444 33346689999883
No 316
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.10 E-value=0.025 Score=63.08 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=83.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH-
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI- 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i- 243 (959)
..++||++.++.+...+... .-|.|.|++|+|||+||+.+.......+.|... -+..+ .+.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHH
Confidence 36899999999999988754 358899999999999999998742222234311 01111 122222211
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcC---cEEEEEeccCCCCCcCCchhHhhhcCCCC---------CCCEEEEecc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEG---EKFLLVLDDVWNEDYGKWEPFYNCLKSSP---------HGSKLLITTR 311 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtr 311 (959)
+.... ... .+... .+| .--++++|+++......-..+...+.... -..++++++.
T Consensus 88 i~~~~-----~~g-------~f~r~-~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 88 IQALK-----DEG-------RYQRL-TSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred Hhhhh-----hcC-------chhhh-cCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 11110 000 01011 111 11289999998876655566666653221 1235666555
Q ss_pred chhHH------Hhhcc-cceEecCCCChhh-hHHHHHHh
Q 002154 312 KETVA------LIMGS-TQVISVNELSEME-CWSVFESL 342 (959)
Q Consensus 312 ~~~v~------~~~~~-~~~~~l~~L~~~~-~~~lf~~~ 342 (959)
+.-.. ..+.. .-.+.++++++++ -.+++...
T Consensus 155 N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 53221 11111 3367889997544 47777653
No 317
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.07 E-value=0.027 Score=59.81 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=45.0
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.++.+++|++.+.......+..-+|+.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999876654567789999999999999999998877
No 318
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.06 E-value=0.083 Score=51.09 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=44.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC--CCCCcccccHHHHHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALK--PGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
+.|.|..|+|||++|.++... .....+++.-.+.++.+ +.+.|..... +..-........+.+.+.+. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL--D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--C-
Confidence 679999999999999988753 22356677666666553 4444333222 11111112223344444222 2
Q ss_pred cEEEEEeccC
Q 002154 273 EKFLLVLDDV 282 (959)
Q Consensus 273 k~~LlVlDdv 282 (959)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337999986
No 319
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.06 E-value=0.031 Score=55.98 Aligned_cols=111 Identities=13% Similarity=0.221 Sum_probs=55.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH-HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF-RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
++|.|+|+.|+||||++..+... ........+++ +.++.... .-...++.+-. ... +.....+.++.. ++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~--vg~---~~~~~~~~i~~a-Lr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE--VGL---DTLSFENALKAA-LR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc--cCC---CccCHHHHHHHH-hc
Confidence 57899999999999999987763 22233333333 22211100 00000111100 000 112233445554 55
Q ss_pred CcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHH
Q 002154 272 GEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL 317 (959)
Q Consensus 272 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 317 (959)
..+=.+++|++.+ .+.+....... ..|..++.|+....+..
T Consensus 73 ~~pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 5677999999953 23333333322 33555777776655443
No 320
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.02 E-value=0.068 Score=64.82 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=74.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
..++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++..... -...+.+++..-. ...+-..++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-hhHhhhhhc
Confidence 3689999999988877754322 34578899999999999999998742211 1223445544322 111111221
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEeccch
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITTRKE 313 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 313 (959)
.... +...+.. ......+.. ...=.|+||++..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~-~~~~g~~--~~~~g~le~----a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHER-GAFTGAS--AQRIGRFEL----ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccc-ccccccc--cchhhHHHh----cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111 1101100 011112211 233569999997766555556666664321 245888888653
No 321
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.42 Score=47.43 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred cccc-chhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 166 EIFG-RQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 166 ~~~G-r~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
+++| -+..+++|.+.+.-+.. -+-.+++-|.++|++|.|||-||+.|+++ ....|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 3555 46677777766533211 13456778899999999999999999984 22345666642
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-----------cCC---chhHhhhcCCC--C
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-----------YGK---WEPFYNCLKSS--P 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-----------~~~---~~~l~~~l~~~--~ 301 (959)
++.+..+.. +..-..++.-.- -..-+-+|+.|.+.+.. .+. .-.+...+... .
T Consensus 216 elvqk~ige-------gsrmvrelfvma----rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ELVQKYIGE-------GSRMVRELFVMA----REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHHhhh-------hHHHHHHHHHHH----HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 222221111 001111222222 23357788888774411 000 11122233322 3
Q ss_pred CCCEEEEeccchhHHHh--hc---ccceEecCCCChhhhHHHHHHh
Q 002154 302 HGSKLLITTRKETVALI--MG---STQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 302 ~gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
++-+||++|..-++... .. -...++.++-+++.-.++++-+
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 56688887765443322 11 2456777777777666666544
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.00 E-value=0.11 Score=58.09 Aligned_cols=57 Identities=25% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~ 248 (959)
..+.+|.++|..|+||||+|..++..... ..+ .+.-|+.... ....+.++.++..++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 35789999999999999999998874321 222 2333443221 122444555666654
No 323
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.98 E-value=0.096 Score=56.86 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRN----FQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
.-.++-|+|++|+|||+++.+++-....... =..++||+....++...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5689999999999999999888753221111 13688999999888876654 444443
No 324
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.96 E-value=0.21 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999865
No 325
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.96 E-value=0.11 Score=56.28 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccc---c-ccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVK---R-NFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-.++-|+|.+|+|||+|+..++-..... + .-..++||+....|+++++ .+|++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 356889999999999999998776432111 1 1136889999999988776 45566654
No 326
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.96 E-value=0.026 Score=56.32 Aligned_cols=108 Identities=22% Similarity=0.217 Sum_probs=51.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh-
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV- 270 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l- 270 (959)
-+++.|.|++|.||||+++.+... .... ...+.+...... ....+.+..+ .....+............
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~----Aa~~L~~~~~----~~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNK----AAKELREKTG----IEAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHH----HHHHHHHHHT----S-EEEHHHHTTEECCEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHH----HHHHHHHhhC----cchhhHHHHHhcCCccccc
Confidence 468889999999999999988763 2222 223333332221 2222333322 011111111100000000
Q ss_pred ----cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 271 ----EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 271 ----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
..++-+||+|+++-.+...+..+...... .|+|+|+.--.
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12234999999976555555566555543 47788876543
No 327
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.95 E-value=0.035 Score=58.41 Aligned_cols=96 Identities=26% Similarity=0.304 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH-hCCCCC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEA-LKPGSA 252 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~-l~~~~~ 252 (959)
...+++.+.. .-+-|.++|+.|+|||++++...+...- ..| ...-++.+...+...+ +.+++. +. ...
T Consensus 22 ~~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~-k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLE-KRR 90 (272)
T ss_dssp HHHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTEC-ECT
T ss_pred HHHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEE-cCC
Confidence 3456666654 2356789999999999999988864211 112 1334555554333332 222221 11 000
Q ss_pred cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCch
Q 002154 253 KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWE 291 (959)
Q Consensus 253 ~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~ 291 (959)
... ..- -.+|+.++++||+.-...+.|.
T Consensus 91 ~~~----------~gP-~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 91 GRV----------YGP-PGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp TEE----------EEE-ESSSEEEEEEETTT-S---TTS
T ss_pred CCC----------CCC-CCCcEEEEEecccCCCCCCCCC
Confidence 000 000 2478999999999655444443
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.16 Score=55.99 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccc--ccceeEEEEeCCCCCH--HHHHHHHHHHhCCCCCcccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKR--NFQKRIWVCVSEPFDE--FRIARAIIEALKPGSAKELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 266 (959)
..++|.++|+.|+||||.+.++........ +-..+..|+... +.. ...++..++.++. +.......+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgv-pv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGI-PVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCc-ceEeeCcHHHHHHHHH
Confidence 467999999999999999988876422211 112344555443 322 2335555555542 2122223344444444
Q ss_pred HHHhcCcEEEEEeccCCCC
Q 002154 267 EYVVEGEKFLLVLDDVWNE 285 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~~~ 285 (959)
. + .+.-++++|.....
T Consensus 251 ~--~-~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 Q--S-KDFDLVLVDTIGKS 266 (388)
T ss_pred H--h-CCCCEEEEcCCCCC
Confidence 3 2 34568888988543
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.15 Score=61.14 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=71.6
Q ss_pred ccccchhHHHHHHHHHhccCCcCC--CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQ--KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
.++|.++.+..|.+.+......-. .....+.+.|+.|+|||.||+.+..- +-+..+..+-++.++ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-h
Confidence 478888888888888876543111 25778899999999999999998872 333334444454443 222 3
Q ss_pred HHHhCCCC-CcccccHHHHHHHHHHHHhcCcE-EEEEeccCCCCCcCCchhHhhhcCCC
Q 002154 244 IEALKPGS-AKELVEFQSLMQHIQEYVVEGEK-FLLVLDDVWNEDYGKWEPFYNCLKSS 300 (959)
Q Consensus 244 ~~~l~~~~-~~~~~~~~~~~~~l~~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (959)
.+.++... ..+....+. |.+. ++.++ .+|+||||...+......+...+..+
T Consensus 634 skligsp~gyvG~e~gg~----Ltea-vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGGQ----LTEA-VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCcccccchhHHH----HHHH-HhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 33333111 112222233 3343 45555 48889999766655455455555544
No 330
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.92 E-value=0.018 Score=57.61 Aligned_cols=22 Identities=45% Similarity=0.526 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
||+|.|++|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 331
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.90 E-value=0.2 Score=57.90 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=37.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|....++++.+.+..-.. ...-|.|.|..|.||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999988888754321 3457889999999999999999874
No 332
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.23 Score=49.21 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDS 217 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 217 (959)
.--+-+|-|+.|.||||||..+.-++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345889999999999999999987653
No 333
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.88 E-value=0.014 Score=58.59 Aligned_cols=59 Identities=29% Similarity=0.294 Sum_probs=26.2
Q ss_pred cCCccEEeeccC--CCccccchhhccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCc
Q 002154 614 LLHLKYLSLAHQ--EAIERLPEALCELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 614 l~~L~~L~L~~~--~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~ 673 (959)
|++|++|.+|.| .....++-..-++++|++|++++|. +..+- ..+.++.+|..|++..|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccC
Confidence 445555555555 3222343333444555555555544 32210 11334444555555544
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.87 E-value=0.05 Score=58.83 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=41.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCccc----ccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSV----KRNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-.+.-|+|.+|+|||+|+..++-.... .+.-..++||+....|++.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 35688999999999999999877532121 11124678999999999887655 556654
No 335
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.87 E-value=0.16 Score=60.64 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=79.1
Q ss_pred ccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 239 (959)
++.|.+...+++.+.+.-... ....-.+-|.++|++|.|||++|+.+... ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 567777666555554321110 01112345999999999999999999884 32233 2222221 1
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC----------cCCchhHhhh----cCC--CCCC
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED----------YGKWEPFYNC----LKS--SPHG 303 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~g 303 (959)
. .... + .....+...+... ....+.+|++|+++.-. ...+...... +.. ...+
T Consensus 222 ~----~~~~-g-----~~~~~~~~~f~~a-~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 V----EMFV-G-----VGASRVRDMFEQA-KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred H----Hhhh-c-----ccHHHHHHHHHHH-HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 1 1110 1 0111222333333 44578899999985421 1112222222 221 1234
Q ss_pred CEEEEeccchhHHH-hh-c---ccceEecCCCChhhhHHHHHHhhc
Q 002154 304 SKLLITTRKETVAL-IM-G---STQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 304 s~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
.-+|.||...+... .. . -...+.+..-+.++-.+++..+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 44555776544322 11 1 145677877777777777777653
No 336
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.011 Score=59.20 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=52.9
Q ss_pred ccCCccEEeeccCCCccccchhhccCCCCcEEecCCC--cCCcccchhhhccccCCeeecCCccccccCCcc---CcCCC
Q 002154 613 KLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGC--SHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAG---IDELI 687 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~---i~~L~ 687 (959)
.+..|++|++.++. ++.+-. +-.|++|+.|+++.| .....++.-..++++|++|++++| .++. +.. +.++.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhc
Confidence 45567777777766 444432 456889999999988 434556656667799999999998 3332 222 34445
Q ss_pred CCCccCceeec
Q 002154 688 RLRSVRKFVVG 698 (959)
Q Consensus 688 ~L~~L~~~~~~ 698 (959)
+|.+|.++.+.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 55555555543
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.82 E-value=0.087 Score=54.50 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=53.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------------
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----------------- 252 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----------------- 252 (959)
+.-.++.|+|.+|+|||+||.++.... .+ .=..++|++..+. ..++.+.+ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999998885421 22 2345778888764 34555543 22321100
Q ss_pred --cccccHHHHHHHHHHHHhc-CcEEEEEeccCC
Q 002154 253 --KELVEFQSLMQHIQEYVVE-GEKFLLVLDDVW 283 (959)
Q Consensus 253 --~~~~~~~~~~~~l~~~~l~-~k~~LlVlDdv~ 283 (959)
......+.+...+... .+ .+.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~-i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEF-IKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHH-HHhcCCCEEEEecHH
Confidence 0112234556666665 43 355689999874
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.80 E-value=0.019 Score=52.88 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~ 215 (959)
|.|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 339
>PRK06547 hypothetical protein; Provisional
Probab=94.80 E-value=0.038 Score=53.67 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.037 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 341
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.79 E-value=0.023 Score=57.60 Aligned_cols=26 Identities=46% Similarity=0.676 Sum_probs=23.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+..+|+|.|.+|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 342
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.22 Score=53.92 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF-DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
.+.+++.|+|+.|+||||++..++... ...-..+.+|+..... ...+.++..++.++.. .....+...+...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-v~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-LIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-EEecCCHHHHHHHHHHH
Confidence 356899999999999999998887642 1111235566654322 2344555556655421 11223444555555443
Q ss_pred HhcCcEEEEEeccCCC
Q 002154 269 VVEGEKFLLVLDDVWN 284 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~ 284 (959)
...+..=+|++|-...
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 1113445788898754
No 343
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.76 E-value=0.18 Score=51.76 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
.-.++.|.|..|.||||||.++.... .+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999986554431 1222 3456666433 455666665
No 344
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.75 E-value=0.0039 Score=72.72 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=29.4
Q ss_pred cCCCCcEEecCCCcCCcc--cchhhhccccCCeeecCCc
Q 002154 637 ELYNLERLNVSGCSHLRE--LPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 637 ~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~ 673 (959)
..++|+.|.+.+|..+.. +-......++|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 478999999999887776 4355678899999999873
No 345
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.74 E-value=0.021 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 346
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.74 E-value=0.17 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 347
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.70 E-value=0.13 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++..+++|.|+.|.|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999874
No 348
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.70 E-value=0.096 Score=57.36 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=49.6
Q ss_pred cccccchhHHHHHHHHHhcc--------CCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEeC-C
Q 002154 165 SEIFGRQKEKNELVNRLLCE--------SSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF---QKRIWVCVS-E 232 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~-~ 232 (959)
..++|.++.++.+.-.+... .-...-..+.|.++|++|+|||++|+.+... ....| +..-++... .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46889988888887666531 0001123467899999999999999999884 33333 222222211 2
Q ss_pred CCCHHHHHHHHHHHh
Q 002154 233 PFDEFRIARAIIEAL 247 (959)
Q Consensus 233 ~~~~~~~~~~i~~~l 247 (959)
..+...+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665554
No 349
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.68 E-value=0.025 Score=57.19 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|+|+|++|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999873
No 350
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.66 E-value=0.064 Score=53.87 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCCccEEEecCCcch-hhhhhhhHHhccCCcccEEEccccCccccccccccccc-------cccccCCccEEeeccCCC
Q 002154 556 GLRGLRSLLVESDEYS-WFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-------NIEKLLHLKYLSLAHQEA 627 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~-~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-------~i~~l~~L~~L~L~~~~~ 627 (959)
.+..+..+++++|.+. .....+...+.+-++|++-+++.-- .+-..+++|+ .+-+|++|+..+||.|-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f---tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF---TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh---hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 5778888999998752 1122344556777899999988611 1111233343 345789999999998862
Q ss_pred ccccc----hhhccCCCCcEEecCCCcCCccc
Q 002154 628 IERLP----EALCELYNLERLNVSGCSHLREL 655 (959)
Q Consensus 628 i~~lp----~~i~~L~~L~~L~l~~~~~l~~l 655 (959)
-...| +.|++-.+|.+|.+++|. +..+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 22333 456788999999999886 5543
No 351
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.65 E-value=0.15 Score=55.28 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKR----NFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
.-.++-|+|++|+|||+++.+++-...... .=..++||+....|+...+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 568999999999999999988865422210 11268899999988887654 4455543
No 352
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.63 E-value=0.065 Score=53.74 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=59.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--cccc----cHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA--KELV----EFQSLMQHI 265 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~~~~----~~~~~~~~l 265 (959)
.+++.|.|+.|.||||+.+.+.... +..+ ...+|.... ..-.+...|...+..... .... ...++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886531 1111 111221111 001222333333321110 0000 111111111
Q ss_pred HHHHhcCcEEEEEeccCCCCC-cCC----chhHhhhcCCCCCCCEEEEeccchhHHHhhc
Q 002154 266 QEYVVEGEKFLLVLDDVWNED-YGK----WEPFYNCLKSSPHGSKLLITTRKETVALIMG 320 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 320 (959)
. +..++-|+++|+..... ... ...+...+.. .|+.+|+||.....+....
T Consensus 104 -~--~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D--YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H--hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 23567899999984422 111 1123333332 3788999999988887654
No 353
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.59 E-value=0.12 Score=56.86 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=47.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----ccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAK----ELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 266 (959)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ ..-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999988764 2222345678876543 2332 2223444321110 1123334433332
Q ss_pred HHHhcCcEEEEEeccCC
Q 002154 267 EYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~ 283 (959)
+.+.-++|+|.+.
T Consensus 156 ----~~~~~lVVIDSIq 168 (372)
T cd01121 156 ----ELKPDLVIIDSIQ 168 (372)
T ss_pred ----hcCCcEEEEcchH
Confidence 2356678888873
No 354
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.58 E-value=0.1 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 355
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.57 E-value=0.15 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 356
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.57 E-value=0.41 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|..|.|||||++.+..-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999763
No 357
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.56 E-value=0.24 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 358
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.55 E-value=0.15 Score=53.75 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987754
No 359
>PRK05439 pantothenate kinase; Provisional
Probab=94.53 E-value=0.17 Score=53.91 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF--QKRIWVCVSEPFDEFRIARAIIEALKPGS 251 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 251 (959)
...+...++... ..+..-+|+|.|.+|+||||+|+.+..- ..... ..+.-++...-+...+.+..- ..+....
T Consensus 70 ~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg 144 (311)
T PRK05439 70 LQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKG 144 (311)
T ss_pred HHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCC
Confidence 344444444322 2456789999999999999999988762 22211 123344444333222222210 0111011
Q ss_pred CcccccHHHHHHHHHHHHhcCcE
Q 002154 252 AKELVEFQSLMQHIQEYVVEGEK 274 (959)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~l~~k~ 274 (959)
..+..+.+.+.+.+... ..|+.
T Consensus 145 ~Pes~D~~~l~~~L~~L-k~G~~ 166 (311)
T PRK05439 145 FPESYDMRALLRFLSDV-KSGKP 166 (311)
T ss_pred CcccccHHHHHHHHHHH-HcCCC
Confidence 23345666666666665 44543
No 360
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.52 E-value=0.054 Score=49.60 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 172 KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 172 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++.+++-+.|...- ..-.+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554321 13468999999999999999999885
No 361
>PTZ00301 uridine kinase; Provisional
Probab=94.51 E-value=0.029 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.50 E-value=0.15 Score=53.58 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=47.7
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCH--HHHHHHHHHHhCCCCC--cccccH-HHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDE--FRIARAIIEALKPGSA--KELVEF-QSLMQH 264 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~--~~~~~~-~~~~~~ 264 (959)
.+.+++.++|++|+||||++.+++.. ....-..+.+++... +.. .+-++...+..+.... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 35689999999999999999888763 222222345555432 322 2333444454431110 011122 222333
Q ss_pred HHHHHhcCcEEEEEeccCCC
Q 002154 265 IQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 265 l~~~~l~~k~~LlVlDdv~~ 284 (959)
+... ..+..=++++|-...
T Consensus 147 l~~~-~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKA-KARNIDVVLIDTAGR 165 (272)
T ss_pred HHHH-HHCCCCEEEEeCCCC
Confidence 4333 333445788887643
No 363
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.49 E-value=0.03 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 364
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.45 E-value=0.045 Score=51.61 Aligned_cols=36 Identities=31% Similarity=0.226 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC 229 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 229 (959)
..+|.|+|.+|+||||||+.+.+. ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999983 433333444554
No 365
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.39 E-value=0.34 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 366
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.39 E-value=0.33 Score=56.13 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 589999999888888754322 3457889999999999999999974
No 367
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.08 Score=50.84 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=59.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCcccccHHHHH-HHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF--DEFRIARAIIEALKPGSAKELVEFQSLM-QHIQEY 268 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~l~~~ 268 (959)
-.+++|+|..|.|||||++.+.... ......+++...... ...... ..+..- .+ .+..+.+ -.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~-~q--lS~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYV-PQ--LSGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEE-ee--CCHHHHHHHHHHHH
Confidence 3689999999999999999998842 233445554422111 111111 111100 00 1111111 122333
Q ss_pred HhcCcEEEEEeccCCCC-CcCCchhHhhhcCCC-CCCCEEEEeccchhHHHh
Q 002154 269 VVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKSS-PHGSKLLITTRKETVALI 318 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 318 (959)
+-.++-++++|+.-.. |......+...+... ..+..+|++|.+......
T Consensus 95 -l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 -LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred -HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4456788999987431 222333344444321 225678888887666554
No 368
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.33 E-value=0.23 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999764
No 369
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.33 E-value=0.22 Score=51.46 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
..-.++.|.|.+|+|||++|.++.... . ..-..++||+..+ +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 356899999999999999997765421 2 2345678888765 445555543
No 370
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.33 E-value=0.19 Score=52.18 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999988865
No 371
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.32 E-value=0.28 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999987
No 372
>PTZ00035 Rad51 protein; Provisional
Probab=94.28 E-value=0.19 Score=54.73 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVK----RNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-.++.|+|..|+|||||+..++-..... +.=..++|++....++..+ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 356899999999999999998886432211 1123567999888887776 344455554
No 373
>PRK06762 hypothetical protein; Provisional
Probab=94.28 E-value=0.035 Score=53.99 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 374
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.28 E-value=0.078 Score=56.41 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=49.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----CcccccHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS----AKELVEFQSLMQHI 265 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 265 (959)
+.-+++-|+|+.|+||||||-.+... ....-...+||+....++... +..++.+. ...+...++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34679999999999999999888763 333345678999988776643 33333111 01122334444444
Q ss_pred HHHHhcCcEEEEEeccCC
Q 002154 266 QEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~ 283 (959)
.+..-.+..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 444123445588999883
No 375
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.23 E-value=0.28 Score=47.15 Aligned_cols=119 Identities=21% Similarity=0.155 Sum_probs=65.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCccccccccee--EEEEeCCCCCHHHHHHHHHHHh-----CCCCC---ccc----cc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKR--IWVCVSEPFDEFRIARAIIEAL-----KPGSA---KEL----VE 257 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~v~~~~~~~~~~~~i~~~l-----~~~~~---~~~----~~ 257 (959)
.+.|-|++..|.||||.|..+.-. .....+.+. -|+..........++... .+ +.+.. .+. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 468888999999999999665542 122223221 144433233444444442 11 10100 000 11
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeccCCC---CCcCCchhHhhhcCCCCCCCEEEEeccch
Q 002154 258 FQSLMQHIQEYVVEGEKFLLVLDDVWN---EDYGKWEPFYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 258 ~~~~~~~l~~~~l~~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 313 (959)
.....+..++.+..++-=|+|||.+-. ...-..+.+...+...+.+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 223334444542334555999999731 22334567777787777788999999985
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=94.22 E-value=0.16 Score=56.89 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+.+|.++|++|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 377
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.22 E-value=0.12 Score=57.57 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCC-----CCcccccHH------
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPG-----SAKELVEFQ------ 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~------ 259 (959)
.-..++|+|..|+|||||++.+.... .....+++....+..++.++....+...... ...+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34679999999999999999998742 2233444554334445555444443332101 011111111
Q ss_pred ---HHHHHHHHHHhcCcEEEEEeccC
Q 002154 260 ---SLMQHIQEYVVEGEKFLLVLDDV 282 (959)
Q Consensus 260 ---~~~~~l~~~~l~~k~~LlVlDdv 282 (959)
.+.+.++. +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd---~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRD---RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHH---cCCCEEEeccch
Confidence 12333332 489999999998
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.19 E-value=0.14 Score=57.15 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998877763
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.13 E-value=0.33 Score=51.50 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.++.|.|.+|+||||++.++..... ..+=..++|++... +..++.+.+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346888999999999999988876421 22124577888766 3455666655543
No 380
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.12 E-value=0.025 Score=50.15 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~ 215 (959)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998874
No 381
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.0055 Score=58.81 Aligned_cols=65 Identities=17% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCC-cCCCCCCCcceEEEccCcc
Q 002154 866 AFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP-DHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 866 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c~~ 934 (959)
.+++|+.|.+.+|..+.+|+...- .+..|+|+.|+|++|+.+++-- .++..+++|+.|.+.+.|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 455666666666666666654221 1245677777777777666522 3445566777777766654
No 382
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.08 E-value=0.21 Score=48.79 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++.++|++|+||||+++.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988873
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.05 E-value=0.27 Score=55.63 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE-PFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
.+|++++|+.|+||||++.+++.....+..-..+..|+... .....+-++...+.++.... ...+.......+.. +
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL~~--L 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLALSE--L 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHHHh--c
Confidence 47999999999999999999987422221112344555432 12233444555555442211 11111222222222 4
Q ss_pred cCcEEEEEeccCC
Q 002154 271 EGEKFLLVLDDVW 283 (959)
Q Consensus 271 ~~k~~LlVlDdv~ 283 (959)
+++ ..+++|-..
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 444 466778764
No 384
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.03 E-value=0.077 Score=58.07 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=58.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCccc----ccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSV----KRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHI 265 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 265 (959)
...+-+.|+|..|.|||.|+-.+|+...+ +-||. ....++-+.+. ........+..+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~-~~~~~~~~l~~va~~- 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLH-QLRGQDDPLPQVADE- 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHH-HHhCCCccHHHHHHH-
Confidence 35788999999999999999999986433 22342 23333333332 101112223333332
Q ss_pred HHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCC-CCCCCEEEEeccchhHH
Q 002154 266 QEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKS-SPHGSKLLITTRKETVA 316 (959)
Q Consensus 266 ~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 316 (959)
+.++..||.||++.-.+..+---+...|.. ...|. |||+|.+....
T Consensus 124 ----l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 124 ----LAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred ----HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 445667999999865554332222223322 24455 66666554433
No 385
>PRK03839 putative kinase; Provisional
Probab=94.02 E-value=0.037 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.32 Score=57.91 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=50.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC--HHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD--EFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
.++++++|+.|+||||++.+++........-..+..++.. .+. ..+.++...+.++... ....+...+.+.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv-~~~~~~~~l~~al~~-- 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPV-HAVKDAADLRFALAA-- 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHH--
Confidence 5799999999999999999888742211111234455443 232 3455556666655222 222344555555544
Q ss_pred hcCcEEEEEeccCC
Q 002154 270 VEGEKFLLVLDDVW 283 (959)
Q Consensus 270 l~~k~~LlVlDdv~ 283 (959)
++++. +|++|-..
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 34443 67778765
No 387
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.54 Score=54.78 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=83.3
Q ss_pred ccccchhHHHHHHHHH---hccCCc----CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 166 EIFGRQKEKNELVNRL---LCESSK----EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L---~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
++.|.+...+.+.+.+ ...... .....+.+.++|++|.|||.||+.+++. ...+|- .+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH-----
Confidence 4556555555444433 222110 2345668999999999999999999993 334442 22211
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC-----CCc------CCchhHhhhcCCCC--CCCE
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN-----EDY------GKWEPFYNCLKSSP--HGSK 305 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~-----~~~------~~~~~l~~~l~~~~--~gs~ 305 (959)
++.... -......+.+.+... .+..+..|++|++.. .+. .....+...+.... .+..
T Consensus 311 ---~l~sk~------vGesek~ir~~F~~A-~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ---ELLSKW------VGESEKNIRELFEKA-RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ---HHhccc------cchHHHHHHHHHHHH-HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 111100 011122233333333 567899999999843 110 12223333333222 2333
Q ss_pred EEEeccchhHHH-hh-c--c-cceEecCCCChhhhHHHHHHhhc
Q 002154 306 LLITTRKETVAL-IM-G--S-TQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 306 iivTtr~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
||-||....... .+ . . ...+.+.+-+.++..+.|..+..
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 444554432222 11 1 1 45788888899999999998874
No 388
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.98 E-value=0.046 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 389
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.98 E-value=0.25 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.97 E-value=0.086 Score=53.49 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 240 (959)
+..++++.+... .++..+|+|.|++|+|||||...+....+.+++=-.++=|+=|.+++-=.++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 455666666543 3467899999999999999998887743333333334455555555443333
No 391
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.073 Score=48.44 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=41.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
..-|.|.|-+|+||||||..+.... ..-|+++++-....++... ....-.....+.+.+...|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~g----yDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEG----YDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhc----ccccccCccccHHHHHHHHHHHHhc
Confidence 3457899999999999999998621 1246777653222222221 1112234445667777777776333
No 392
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.4 Score=48.04 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=39.1
Q ss_pred ccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 002154 166 EIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF 222 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 222 (959)
++-|=.++++++.+.+..+-- -+-..++-|.++|++|.|||-+|+.|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 456677888888776533211 0234567788999999999999999999 454444
No 393
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.93 E-value=0.74 Score=49.56 Aligned_cols=49 Identities=27% Similarity=0.189 Sum_probs=32.9
Q ss_pred eEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 324 VISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 324 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
++++++++.+|+..++..+.-.+-- ......+...+++.--.+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887643221 111233444556666778988644
No 394
>PHA00729 NTP-binding motif containing protein
Probab=93.89 E-value=0.069 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999873
No 395
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.88 E-value=0.057 Score=65.36 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=83.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCC------CCcccccHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPG------SAKELVEFQSLMQH 264 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~ 264 (959)
+.+++.|+|+.|.|||||.+.+.... . .....++|.+..... ...+..+...++.. ...-......+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 34799999999999999998886531 0 001111222211100 00111111111100 00000111122222
Q ss_pred HHHHHhcCcEEEEEeccCCCCC-cCCchhH----hhhcCCCCCCCEEEEeccchhHHHhhcccceEecCC--CChhhhHH
Q 002154 265 IQEYVVEGEKFLLVLDDVWNED-YGKWEPF----YNCLKSSPHGSKLLITTRKETVALIMGSTQVISVNE--LSEMECWS 337 (959)
Q Consensus 265 l~~~~l~~k~~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~--L~~~~~~~ 337 (959)
+.. + .++-|+++|+..... ......+ ...+. ..|+.+|+||....+.........+.-.. ++.+ ...
T Consensus 397 l~~--~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~ 470 (771)
T TIGR01069 397 LSK--T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLS 470 (771)
T ss_pred HHh--c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCc
Confidence 221 2 478999999986532 2222223 22232 35788999999877654432211111111 1111 100
Q ss_pred HHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHh
Q 002154 338 VFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILE 394 (959)
Q Consensus 338 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~ 394 (959)
|..+... + .+. ...|-.|++++ |+|-.+..-|..+... ...+...+++
T Consensus 471 -p~Ykl~~-G---~~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 471 -PTYKLLK-G---IPG--ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred -eEEEECC-C---CCC--CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1111111 1 111 23344677776 8888888888776554 2334444443
No 396
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.044 Score=53.49 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999985
No 397
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.86 E-value=0.085 Score=49.98 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 172 KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 172 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+.+++|.+++. -++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~---------~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---------GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 45788888883 279999999999999999999985
No 398
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.82 E-value=1.7 Score=45.10 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=74.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
+.|+|-.. .+++..++.... ..-+.+.|+|+.|+|||+-++.+++. ....+-+..+..+....++..+.
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 45665433 233444443221 23348899999999999999999984 22233445666677766666666
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP 301 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 301 (959)
.... .... .........+... +++..-++++|+...-....++.++......+
T Consensus 141 ~~~~-~~~~--~~~~d~~~~~~~~-l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 141 AAAF-GATD--GTINDLTERLMIR-LRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred HHHh-cccc--hhHHHHHHHHHHH-HccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 6554 2221 2233344444555 57788899999987766666777766554443
No 399
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.80 E-value=0.036 Score=49.80 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccce
Q 002154 195 ISLVGMGGIGKTTLAQFAYNNDSVKRNFQK 224 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 224 (959)
|.|.|.+|+||||+|+.+.. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 46666753
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.74 E-value=0.052 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 401
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.73 E-value=0.17 Score=55.57 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=49.7
Q ss_pred cccccchhHHHHHHHHHhcc--------CCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEe-CC
Q 002154 165 SEIFGRQKEKNELVNRLLCE--------SSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF---QKRIWVCV-SE 232 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-~~ 232 (959)
..++|.++.++.+..++... .....-..+.|.++|+.|+|||+||+.+... ....| +...|... -.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 46899999999888877531 0000112467899999999999999999874 33333 22212211 11
Q ss_pred CCCHHHHHHHHHHHh
Q 002154 233 PFDEFRIARAIIEAL 247 (959)
Q Consensus 233 ~~~~~~~~~~i~~~l 247 (959)
..+...+++.++...
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235566666665554
No 402
>PRK04040 adenylate kinase; Provisional
Probab=93.72 E-value=0.05 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 403
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.69 E-value=0.069 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999874
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.68 E-value=0.6 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+.+|.++|+.|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 405
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.67 E-value=0.44 Score=44.53 Aligned_cols=78 Identities=12% Similarity=0.218 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhhhcccchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhccc-CcHHHHHHHHHHHhhhhcchhhHH
Q 002154 3 DAIISPLLEQLISVAVEEPKEQVRLVNGVGKEVEKLTSNLQAIQAVLHDAEKRQV-KEETVRLWLDQLRGTSYDMEDVLG 81 (959)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~~d~ed~ld 81 (959)
.|+++.+++.+.. .+.+.......++.-+++|...++.|.-++++.+.... -+..-+.-++++.+...++++++.
T Consensus 8 gaalG~~~~eLlk----~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~ 83 (147)
T PF05659_consen 8 GAALGAVFGELLK----AVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVE 83 (147)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 66666677777888899999999999999999887532 233336778899999999999998
Q ss_pred HHH
Q 002154 82 EWN 84 (959)
Q Consensus 82 ~~~ 84 (959)
.|.
T Consensus 84 k~s 86 (147)
T PF05659_consen 84 KCS 86 (147)
T ss_pred Hhc
Confidence 874
No 406
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.66 E-value=0.031 Score=33.22 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=14.2
Q ss_pred CCcEEecCCCcCCcccchhhhc
Q 002154 640 NLERLNVSGCSHLRELPRGIGK 661 (959)
Q Consensus 640 ~L~~L~l~~~~~l~~lp~~i~~ 661 (959)
+|++||+++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777774 6677766554
No 407
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.19 Score=54.01 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----ccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAK----ELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 266 (959)
.-.+|.|-|.+|||||||.-++..+ ....- .+++|+-.+... ..+--++.++..... ...+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3478999999999999999988884 33333 677887665432 122334455421111 1234444444443
Q ss_pred HHHhcCcEEEEEeccCCC
Q 002154 267 EYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~~ 284 (959)
+.++-++|+|-+..
T Consensus 166 ----~~~p~lvVIDSIQT 179 (456)
T COG1066 166 ----QEKPDLVVIDSIQT 179 (456)
T ss_pred ----hcCCCEEEEeccce
Confidence 35889999999843
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.62 E-value=0.077 Score=51.88 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV 230 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 230 (959)
.-.|++|+|++|+|||||.+-+.. ....=+..+||.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECC
Confidence 346899999999999999999987 3334456677753
No 409
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.61 E-value=0.48 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||.+.++..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 410
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.60 E-value=0.042 Score=55.22 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|+.|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999773
No 411
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.58 E-value=0.55 Score=53.34 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCEEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEeCCCCCH--HHHHHHHHHHhCCC--C-----------Ccc
Q 002154 191 GPRIISLVGMGGIGKTT-LAQFAYNNDSVKRNFQKRIWVCVSEPFDE--FRIARAIIEALKPG--S-----------AKE 254 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~i~~~l~~~--~-----------~~~ 254 (959)
.-.||.|+|..|.|||| ||+.+|.+ .|...--|.+.++-.+ ..+.+.+.+.++.. . ...
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 45799999999999996 67888875 2322224555555433 34455566665311 0 000
Q ss_pred c-----ccHH-HHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcC---CCCCCCEEEEeccch---hHHHhhccc
Q 002154 255 L-----VEFQ-SLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLK---SSPHGSKLLITTRKE---TVALIMGST 322 (959)
Q Consensus 255 ~-----~~~~-~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtr~~---~v~~~~~~~ 322 (959)
. .... -+.+.|.+. .-.|--.||+|.+.+... .-+-+...+. .....-|+||||-.. ..+..++..
T Consensus 445 ~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~ 522 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNC 522 (1042)
T ss_pred ceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCC
Confidence 0 0111 123334443 334667999999976432 2233333332 224578999999763 455555644
Q ss_pred ceEecCC
Q 002154 323 QVISVNE 329 (959)
Q Consensus 323 ~~~~l~~ 329 (959)
..+.+++
T Consensus 523 p~f~IpG 529 (1042)
T KOG0924|consen 523 PQFTIPG 529 (1042)
T ss_pred ceeeecC
Confidence 4455444
No 412
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.58 E-value=0.052 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 413
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.39 Score=50.43 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=75.6
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCc---c---------cccccceeEEEEeCCCCCHHHHHH
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNND---S---------VKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~---------~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
-+++...+... .-.....++|+.|+||+++|..+...- . ...|-|..........
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 45566666432 346678899999999999997765421 0 0012221111111000
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-hhHHHh-h
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-ETVALI-M 319 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~ 319 (959)
..........+.+.+...-..+++-++|+|++...+.+++..++..+..-..++.+|++|.+ ..+... .
T Consensus 73 ---------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~ 143 (290)
T PRK05917 73 ---------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR 143 (290)
T ss_pred ---------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH
Confidence 00011112223333322223466778899999888888889999988887777777776665 333322 2
Q ss_pred cccceEecCCC
Q 002154 320 GSTQVISVNEL 330 (959)
Q Consensus 320 ~~~~~~~l~~L 330 (959)
.....+.+.++
T Consensus 144 SRcq~~~~~~~ 154 (290)
T PRK05917 144 SRSLSIHIPME 154 (290)
T ss_pred hcceEEEccch
Confidence 33556677665
No 414
>PRK00625 shikimate kinase; Provisional
Probab=93.55 E-value=0.049 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.++||.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 415
>PF13479 AAA_24: AAA domain
Probab=93.53 E-value=0.22 Score=50.45 Aligned_cols=21 Identities=48% Similarity=0.494 Sum_probs=18.4
Q ss_pred CEEEEEEcCCCChHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFA 212 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v 212 (959)
.-.+.|+|.+|+||||+|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346889999999999999877
No 416
>PRK05922 type III secretion system ATPase; Validated
Probab=93.53 E-value=0.2 Score=55.64 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=48.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCC------CcccccHH----
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALKPGS------AKELVEFQ---- 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 259 (959)
.-..++|+|..|+|||||++.+.+.. ..+..+.+.+.+. ....+.+.+......... ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999998742 1233334333332 233445544443332111 11111111
Q ss_pred -----HHHHHHHHHHhcCcEEEEEeccCC
Q 002154 260 -----SLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 260 -----~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
.+.+.++. +|+++|+++||+-
T Consensus 232 ~~~a~tiAEyfrd---~G~~VLl~~DslT 257 (434)
T PRK05922 232 GRAAMTIAEYFRD---QGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHH---cCCCEEEeccchh
Confidence 12233332 4899999999993
No 417
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.52 E-value=0.58 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.++++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 418
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.52 E-value=0.39 Score=48.77 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=58.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCC------CCcccccHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPG------SAKELVEFQSLMQH 264 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~ 264 (959)
..+++.|.|+.|.||||+.+.+.... +..+-.+.+|..-.. -..+..|+..++.. ...-..+..++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998887621 111111112211000 00011111111100 00001122233333
Q ss_pred HHHHHhcCcEEEEEeccCCCCCc--CCc---hhHhhhcCCCCCCCEEEEeccchhHHHhh
Q 002154 265 IQEYVVEGEKFLLVLDDVWNEDY--GKW---EPFYNCLKSSPHGSKLLITTRKETVALIM 319 (959)
Q Consensus 265 l~~~~l~~k~~LlVlDdv~~~~~--~~~---~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 319 (959)
+.. .+++-|+++|+...... +.. ..+...+... .++.+|++|....++...
T Consensus 105 l~~---~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSN---CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHh---CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 332 25789999999744221 111 1233333332 478899999998877654
No 419
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.51 E-value=0.5 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.33 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988865
No 421
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.16 Score=50.35 Aligned_cols=56 Identities=29% Similarity=0.337 Sum_probs=40.3
Q ss_pred cccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF 222 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 222 (959)
.++-|-+-..++|.+...-+-.+ +-..++-|.++|++|.|||.||+.|.++ .+..|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 35677888888887766433211 2345678899999999999999999996 34444
No 422
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.48 E-value=0.11 Score=53.53 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 175 NELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 175 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++..+.. ..++..+|+|.|.+|+|||||.-.+.....-+++=-.++=|+-|.+++-=.++.+=+
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 455555543 345788999999999999999988877544445544566677777776555554433
No 423
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.47 E-value=0.46 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 424
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.42 E-value=0.4 Score=46.78 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeE--EEEeCCCCCHHHHHHHHH--HHh--CCCCC----cc---ccc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRI--WVCVSEPFDEFRIARAII--EAL--KPGSA----KE---LVE 257 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~~~~~i~--~~l--~~~~~----~~---~~~ 257 (959)
....|.|+|..|-||||.|.-+.-. .....+.+.+ |+--........++..+- .-. +.+.. .. ...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 4578999999999999999666542 1111222211 333332334444444320 000 10000 00 011
Q ss_pred HHHHHHHHHHHHhcCcEEEEEeccCCC---CCcCCchhHhhhcCCCCCCCEEEEeccch
Q 002154 258 FQSLMQHIQEYVVEGEKFLLVLDDVWN---EDYGKWEPFYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 258 ~~~~~~~l~~~~l~~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 313 (959)
.....+..++.+..++-=++|||++-. ...-..+++...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 222344445552345556999999722 22345667888887777788999999984
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.41 E-value=0.087 Score=52.10 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVS 231 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 231 (959)
.+++.|+|+.|+|||||++.+.. .....|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 46899999999999999999998 355667655555533
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.40 E-value=0.067 Score=52.93 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999874
No 427
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.38 E-value=0.18 Score=60.73 Aligned_cols=130 Identities=16% Similarity=0.105 Sum_probs=71.3
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS-VKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
+.++|....++++.+....... ...-|.|+|..|+||+++|+.+.+... -.+.| +.|++..-. ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCC-hHHHHHHh
Confidence 3588999888888887765332 233478999999999999999987421 11222 344544432 12222233
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC---C--------CCEEEEeccc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP---H--------GSKLLITTRK 312 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtr~ 312 (959)
+........... ...+ -....=.|+||++..........+...+..+. . ..+||.||..
T Consensus 397 fg~~~~~~~~~~------~g~~----~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSENGR------LSKF----ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccCCC------CCce----eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 221110000000 0000 11233468999997766555666666664431 1 3467777654
No 428
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.38 E-value=0.44 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|..|.|||||++.++.-
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3468999999999999999999864
No 429
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.37 E-value=0.071 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999884
No 430
>PRK08149 ATP synthase SpaL; Validated
Probab=93.36 E-value=0.28 Score=54.56 Aligned_cols=86 Identities=10% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCC------CCcccccHH----
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-FDEFRIARAIIEALKPG------SAKELVEFQ---- 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~------~~~~~~~~~---- 259 (959)
+-..++|+|..|+|||||++.++.... -+.++...+... .+..++..+........ ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456789999999999999999997432 233333444332 34455555555432211 011111111
Q ss_pred -----HHHHHHHHHHhcCcEEEEEeccCC
Q 002154 260 -----SLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 260 -----~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
.+.+.++ -++|++||++||+-
T Consensus 226 ~~~a~tiAE~fr---~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFR---DQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHH---HcCCCEEEEccchH
Confidence 1223333 25899999999993
No 431
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.36 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999875
No 432
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.30 E-value=0.051 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 433
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.29 E-value=0.52 Score=56.37 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999965
No 434
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.29 E-value=0.17 Score=58.86 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=35.8
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|....++++++.+..-.. ...-|.|+|..|+||+++|+.+...
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHh
Confidence 689999888888877754321 2344789999999999999998763
No 435
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.27 E-value=0.065 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++++|+|+.|+||||||+.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999983
No 436
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.24 E-value=0.087 Score=49.17 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE 232 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 232 (959)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999852 234455555565544
No 437
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.0065 Score=58.35 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceee
Q 002154 825 LPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLS 904 (959)
Q Consensus 825 l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~ 904 (959)
+..+..+++++.|.+.+|..+.+-+.+..+. .+|+|+.|++++|+++++--.. ....+++|+.|.
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----------~~~~L~~L~lsgC~rIT~~GL~-----~L~~lknLr~L~ 182 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG----------LAPSLQDLDLSGCPRITDGGLA-----CLLKLKNLRRLH 182 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcc----------cccchheeeccCCCeechhHHH-----HHHHhhhhHHHH
Confidence 3445566666666666666554444333321 5677777777777766653321 244567777777
Q ss_pred eecCCCC
Q 002154 905 IVYCPKL 911 (959)
Q Consensus 905 i~~C~~L 911 (959)
|.+.+..
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 7665433
No 438
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.22 E-value=0.045 Score=54.70 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=27.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc--------ceeEEEEeCCC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNF--------QKRIWVCVSEP 233 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~ 233 (959)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999998776643222222 35678887665
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=93.20 E-value=0.43 Score=56.43 Aligned_cols=25 Identities=40% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||++.++..
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.19 E-value=0.49 Score=49.45 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=46.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF-DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
..+++++|.+|+||||+++.+... ....=..+.+++..... .....++...+.++... ....+...+...+... -
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~-~~~~~~~~l~~~l~~l-~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRDEAAMTRALTYF-K 150 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-EecCCHHHHHHHHHHH-H
Confidence 469999999999999999888763 21111234455544321 12222233333332111 1112334444444332 1
Q ss_pred c-CcEEEEEeccCCCC
Q 002154 271 E-GEKFLLVLDDVWNE 285 (959)
Q Consensus 271 ~-~k~~LlVlDdv~~~ 285 (959)
+ ++.=++++|.....
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 1 24467888988543
No 441
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.18 E-value=0.42 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAY 213 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~ 213 (959)
-+++.|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999987
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.15 E-value=0.054 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.13 E-value=0.069 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.12 E-value=0.17 Score=53.26 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
+.-+++.|+|.+|+|||++|.++... .......++||+..+. ..++.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHH
Confidence 46689999999999999999887763 4555788999998874 34444443
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.09 E-value=0.59 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999763
No 446
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.06 E-value=0.074 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|..|+|||||++.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.05 E-value=0.12 Score=59.25 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=43.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVC 229 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 229 (959)
.++.--.+-++++.+||..... +....+++.+.|++|+||||.++.++++ -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 3454446678888889875332 2334679999999999999999999984 2366666765
No 448
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.04 E-value=0.27 Score=50.60 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred ccccchhHHHHHHHHHhccC-CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCES-SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.++|..-..+.|+..+.+-- .+...++-+++.+|..|.||.-+++.++++....+-= ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 46776666666666554321 1134567899999999999999999888752211100 01111222
Q ss_pred HHhCCCCCccccc-HHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcC
Q 002154 245 EALKPGSAKELVE-FQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLK 298 (959)
Q Consensus 245 ~~l~~~~~~~~~~-~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 298 (959)
....-.......+ .+++.+.+++..-.-+|-|+|+|++.....+-.+.+...+.
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 2221111111111 23455555555344589999999997766555555555554
No 449
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.03 E-value=0.19 Score=54.87 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=47.2
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
.++|+++....+...+... +.+.+.|++|+|||+||+.+... .... .++|.+.......+++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~~---~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGLP---FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCCC---eEEEecCCCCCHHHhcCch
Confidence 4888888888877777643 45889999999999999999983 3322 3566676666666655443
No 450
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.03 E-value=0.35 Score=50.12 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccc--ccccceeEEEEeCCCC-CHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSV--KRNFQKRIWVCVSEPF-DEFRIARAIIE 245 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~-~~~~~~~~i~~ 245 (959)
+-+.++|.|..|+|||+|+..+.++... +++-+.++++-+.+.. ...++..++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 3467899999999999999988875321 2234677888887754 34555555544
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.02 E-value=0.087 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHh
Q 002154 192 PRIISLVGMGGIGKTTLAQFAY 213 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~ 213 (959)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 452
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.00 E-value=0.063 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.00 E-value=0.58 Score=53.94 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcc-ccccc-----ceeEEEEeCC---------------CC-C-HHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDS-VKRNF-----QKRIWVCVSE---------------PF-D-EFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~v~~---------------~~-~-~~~~~~~i~~~l 247 (959)
.-..|+|+|+.|+|||||.+.+..... ..+.. -.+.|+.-.. .+ + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 345799999999999999999955311 11111 1111222111 01 1 133444444444
Q ss_pred CCCCCccc-----ccHHHHHHHHHHHHhcCcEEEEEeccCCC-CCcCCchhHhhhcCCCCCCCEEEEeccchhHHHhhcc
Q 002154 248 KPGSAKEL-----VEFQSLMQHIQEYVVEGEKFLLVLDDVWN-EDYGKWEPFYNCLKSSPHGSKLLITTRKETVALIMGS 321 (959)
Q Consensus 248 ~~~~~~~~-----~~~~~~~~~l~~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 321 (959)
........ .+-.+-.+.....++-.++=+||||.--+ -|.+..+.+..+|... .|+ ||+.|.++.....+.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-
Confidence 32221111 11112222222222566888999997633 2334445555555543 254 888899887777654
Q ss_pred cceEecCC
Q 002154 322 TQVISVNE 329 (959)
Q Consensus 322 ~~~~~l~~ 329 (959)
.+++.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 45555554
No 454
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.99 E-value=0.21 Score=53.87 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~ 215 (959)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 455
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.99 E-value=0.092 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999888763
No 456
>PRK04328 hypothetical protein; Provisional
Probab=92.99 E-value=0.27 Score=51.20 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP 233 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 233 (959)
.-.++.|.|.+|.|||+||.++... .. ..-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 5679999999999999999876543 12 22355788887763
No 457
>PRK06217 hypothetical protein; Validated
Probab=92.99 E-value=0.065 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 458
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.95 E-value=0.089 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+...+|+|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 459
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.94 E-value=0.19 Score=45.11 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=33.4
Q ss_pred ccccchhHHHHHHHHHhccC-CcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCES-SKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|..-..+.+++.+..-- .....++-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46676655555544443211 113457789999999999999988877664
No 460
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.94 E-value=0.17 Score=49.95 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=31.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++|-+..+..+.-... +..-+.++|+.|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888887777766654 235789999999999999999865
No 461
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.94 E-value=0.39 Score=53.50 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhCCCC------CcccccHH----
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD-EFRIARAIIEALKPGS------AKELVEFQ---- 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 259 (959)
.-..++|+|..|+|||||++.+++... .+..+++-+.+... ..++..+.+..-+... ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999997422 24455566655443 3344444433321110 11111111
Q ss_pred -----HHHHHHHHHHhcCcEEEEEeccCC
Q 002154 260 -----SLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 260 -----~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
...+.+++ +++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrd---~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRD---QGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHH---CCCcEEEEEeCcH
Confidence 12333332 4899999999993
No 462
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.94 E-value=0.81 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||++.+...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.93 E-value=0.25 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999874
No 464
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.79 Score=48.74 Aligned_cols=56 Identities=30% Similarity=0.350 Sum_probs=39.6
Q ss_pred cccccchhHHHHHHHHHhccCC--------cCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 002154 165 SEIFGRQKEKNELVNRLLCESS--------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF 222 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 222 (959)
.++-|-+..++++.+.+.-+-. .--...+-|.++|++|.|||-||+.+... ....|
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ake--aga~f 155 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKE--AGANF 155 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHH--cCCCc
Confidence 3567778888877776543211 01234677899999999999999999984 55556
No 465
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.87 E-value=0.066 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 466
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.87 E-value=0.079 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcCc
Q 002154 195 ISLVGMGGIGKTTLAQFAYNND 216 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~~ 216 (959)
|.|+|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.86 E-value=0.099 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5689999999999999999999874
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.84 E-value=0.11 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+.+.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999999999763
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.83 E-value=0.083 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 470
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.83 E-value=0.075 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 471
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.78 E-value=0.067 Score=49.60 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=31.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
+|.|-|++|+||||+|+.+.++...+ .|+ .-.++++|++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~vs------aG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LVS------AGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------eee------ccHHHHHHHHHcC
Confidence 68999999999999999999853221 122 2247888888876
No 472
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.77 E-value=0.36 Score=50.62 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP 233 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 233 (959)
..-.++.|.|++|+|||++|.++.... .+ .=..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecCC
Confidence 356799999999999999998875531 12 2245678887643
No 473
>PRK13949 shikimate kinase; Provisional
Probab=92.75 E-value=0.076 Score=51.57 Aligned_cols=22 Identities=45% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.|+|+.|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.74 E-value=0.089 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+|+|+|+.|+||||||+.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999984
No 475
>PRK15115 response regulator GlrR; Provisional
Probab=92.72 E-value=0.33 Score=55.79 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|....+.++.+...... .....|.|+|..|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 57888777777776554322 12345779999999999999999874
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.71 E-value=0.078 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|+|+.|+|||||++.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999984
No 477
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=3.1 Score=43.97 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=48.5
Q ss_pred hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHHHh-hcccceEecCCCChhhhHHHHH
Q 002154 270 VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVALI-MGSTQVISVNELSEMECWSVFE 340 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~ 340 (959)
..+++-++|+|++.......+..+...+..-..++.+|++|.+. .+... ......+.+.+ +.++..+.+.
T Consensus 101 ~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 44667799999998888888888988888777777777777653 33322 23356777766 6666555554
No 478
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.34 Score=56.09 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=60.4
Q ss_pred cccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.++=|-++.+.+|.+-+.-+-. .+-.+..-|.++|++|.|||-||++|+.+... -|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----H
Confidence 4677888889999887644211 01222456789999999999999999985221 24555432 1
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~ 284 (959)
++..- ++ .+.+.+.+.+.+. -..++++|.||++++
T Consensus 741 LLNMY---VG-------qSE~NVR~VFerA-R~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY---VG-------QSEENVREVFERA-RSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH---hc-------chHHHHHHHHHHh-hccCCeEEEeccccc
Confidence 11111 11 1223334444443 556899999999854
No 479
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.64 E-value=7.8 Score=42.61 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP--FDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~ 248 (959)
..+.||-.+|.-|.||||.|-++++. .+. ....+-+...+. +-..+.++.+.++++
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 35789999999999999999888774 332 222232222222 233445556666654
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.55 E-value=0.13 Score=47.90 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 368999999999999999999874
No 481
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.55 E-value=0.27 Score=54.55 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=50.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhCCCC------CcccccHH----
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD-EFRIARAIIEALKPGS------AKELVEFQ---- 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 259 (959)
.-..++|+|..|+|||||++.+++.. ..+.++.+-+.+... ..++...++..-.... ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998742 224566666666543 3445555433311010 11111111
Q ss_pred -----HHHHHHHHHHhcCcEEEEEeccC
Q 002154 260 -----SLMQHIQEYVVEGEKFLLVLDDV 282 (959)
Q Consensus 260 -----~~~~~l~~~~l~~k~~LlVlDdv 282 (959)
.+.+.++. +|+.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd---~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRD---QGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEEcCh
Confidence 12333333 489999999998
No 482
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.55 E-value=0.27 Score=55.82 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP 233 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 233 (959)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 4579999999999999999888774 2222235678876553
No 483
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.094 Score=49.42 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 002154 194 IISLVGMGGIGKTTLAQFAY 213 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~ 213 (959)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 484
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.53 E-value=0.77 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 485
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.52 E-value=0.077 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|.|+|+.|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 486
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.12 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++..+|.+.|.+|.||||+|..++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 4568999999999999999999988
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.48 E-value=0.085 Score=50.97 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 002154 195 ISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 195 v~I~G~gGiGKTtLa~~v~~~ 215 (959)
|.|.|..|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 488
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.45 E-value=0.58 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEEEcCCCChHHH-HHHHHhc
Q 002154 193 RIISLVGMGGIGKTT-LAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTt-La~~v~~ 214 (959)
+.+.|.|..|.|||+ ++..+++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 688999999999999 4455544
No 489
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.45 E-value=0.41 Score=55.38 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIE 245 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 245 (959)
.++|......++.+.+.... .....+.|.|..|+||+++|+.+..... ......+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 57888777777777765422 1334678999999999999999987421 11122233343332 223333322
Q ss_pred HhCCC--CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEeccc
Q 002154 246 ALKPG--SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITTRK 312 (959)
Q Consensus 246 ~l~~~--~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 312 (959)
++.. ....... .....+ .....-.|+||++..-.......+...+..+. .+.+||+||..
T Consensus 206 -fg~~~~~~~~~~~--~~~g~~----~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 206 -FGHEKGAFTGANT--RRQGRF----EQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred -cCCCCCCCCCccc--CCCCcE----EECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 2210 0000000 000001 11223458899997766555666666665432 24588888865
Q ss_pred h
Q 002154 313 E 313 (959)
Q Consensus 313 ~ 313 (959)
.
T Consensus 279 ~ 279 (463)
T TIGR01818 279 N 279 (463)
T ss_pred C
Confidence 3
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.44 E-value=0.68 Score=53.47 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
..-.++.|.|++|+|||||+.++... ....=..+++++..+ +..++.+.+ +.++
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 35689999999999999999888763 222334567777665 344454443 4443
No 491
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=15 Score=38.06 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=60.8
Q ss_pred ccccchhHHHHHHHHHhccC------CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCES------SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 239 (959)
++-|-+...+.|.+.+.-+- .......+-|.++|++|.||+.||+.|+.... .. |.+||.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH----HH
Confidence 56788888888877654321 11334578899999999999999999998522 22 3444432 12
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~ 284 (959)
.... ++ ..+.++..|-+..-..|+-+|.+|.+..
T Consensus 203 vSKW---mG--------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 203 VSKW---MG--------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHH---hc--------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 2111 11 1234455554444567999999999843
No 492
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.38 E-value=0.23 Score=58.46 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.++.++.|...+.. .+.+.++|++|+||||+|+.+.+.. ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 4689998888888776642 1368899999999999999998742 2334577778655 3346677777777
Q ss_pred HHhC
Q 002154 245 EALK 248 (959)
Q Consensus 245 ~~l~ 248 (959)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6665
No 493
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.31 Score=54.89 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=84.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE 271 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~ 271 (959)
+.-|.++|++|+|||-||+.|+|. .+..| ++|-.+ +++.... + .+...+...+++. -.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYV---G-------ESErAVR~vFqRA-R~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYV---G-------ESERAVRQVFQRA-RA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHh---h-------hHHHHHHHHHHHh-hc
Confidence 566889999999999999999995 44455 444322 1221111 1 1122233333333 56
Q ss_pred CcEEEEEeccCCC-----CCcCCch------hHhhhcCCC--CCCCEEEEeccchhHHHh-h-cc---cceEecCCCChh
Q 002154 272 GEKFLLVLDDVWN-----EDYGKWE------PFYNCLKSS--PHGSKLLITTRKETVALI-M-GS---TQVISVNELSEM 333 (959)
Q Consensus 272 ~k~~LlVlDdv~~-----~~~~~~~------~l~~~l~~~--~~gs~iivTtr~~~v~~~-~-~~---~~~~~l~~L~~~ 333 (959)
.-+++|+||.+.. .+...|. +++.-+... ..|--||-.|...++... + .. .....++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 7899999999843 1112222 222223222 346666766665544322 1 11 446667777778
Q ss_pred hhHHHHHHhhccCCCC-CCCchHHHHHHHHHHhcCCch
Q 002154 334 ECWSVFESLAFFGKSM-QERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 334 ~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~G~P 370 (959)
|-.++++...-....+ ...-++.+|++. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888888776432211 233456654432 3555543
No 494
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.35 E-value=0.68 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-..++|+|+.|.|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 495
>PRK13947 shikimate kinase; Provisional
Probab=92.32 E-value=0.091 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 496
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.32 E-value=0.12 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+++.|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999853
No 497
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.28 E-value=0.59 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||.+.+..-
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 498
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.27 E-value=0.43 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-..++|+|..|+|||||++.+.-
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999865
No 499
>PRK13948 shikimate kinase; Provisional
Probab=92.25 E-value=0.12 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999873
No 500
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.25 E-value=0.79 Score=55.89 Aligned_cols=184 Identities=15% Similarity=0.225 Sum_probs=83.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--ccc----ccHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA--KEL----VEFQSLMQH 264 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~~~----~~~~~~~~~ 264 (959)
..+++.|+|+.+.||||+.+.+.-..- -.....+|.+.... ...++..|+..++.... ... .....+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 457899999999999999988853200 00111122222100 00111111111110000 000 111122222
Q ss_pred HHHHHhcCcEEEEEeccCCCCCc-CCchhH----hhhcCCCCCCCEEEEeccchhHHHhhcccceE---ecCCCChhhhH
Q 002154 265 IQEYVVEGEKFLLVLDDVWNEDY-GKWEPF----YNCLKSSPHGSKLLITTRKETVALIMGSTQVI---SVNELSEMECW 336 (959)
Q Consensus 265 l~~~~l~~k~~LlVlDdv~~~~~-~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~---~l~~L~~~~~~ 336 (959)
+.. + ..+-|+++|+...... ..-..+ ...+. ..|+.+|+||....++........+ .+. ++. +..
T Consensus 402 l~~--~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l 474 (782)
T PRK00409 402 LEK--A-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETL 474 (782)
T ss_pred HHh--C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcC
Confidence 222 2 4778999999864321 112223 22232 3478899999998777654332211 111 111 111
Q ss_pred HHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHh
Q 002154 337 SVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILE 394 (959)
Q Consensus 337 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~ 394 (959)
. |...+.. +.+. ...|-.|++++ |+|-.+..-|..+... .......+++
T Consensus 475 ~-~~Ykl~~-G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 475 R-PTYRLLI-GIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred c-EEEEEee-CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 1 1111111 1111 22344677777 8888888888776554 2334444444
Done!