Query 002154
Match_columns 959
No_of_seqs 497 out of 4098
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.8E-48 1.6E-52 451.9 24.1 317 168-511 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.9E-39 2.7E-43 374.4 17.5 287 166-502 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-37 1.5E-41 400.2 23.9 314 161-509 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-34 2.2E-38 338.4 25.1 308 163-507 122-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 9.4E-25 3.2E-29 267.0 17.2 386 531-957 269-766 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 260.0 18.1 333 577-934 440-839 (876)
7 4eco_A Uncharacterized protein 99.9 4.2E-24 1.4E-28 255.0 16.0 333 577-933 198-598 (636)
8 4eco_A Uncharacterized protein 99.9 1E-23 3.5E-28 251.6 18.4 128 783-936 488-633 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 1.7E-23 5.9E-28 253.4 19.7 324 556-936 489-873 (876)
10 4fmz_A Internalin; leucine ric 99.9 4.9E-23 1.7E-27 227.7 19.6 303 556-933 42-344 (347)
11 3rgz_A Protein brassinosteroid 99.9 3.8E-23 1.3E-27 252.8 17.5 295 531-879 247-549 (768)
12 3o6n_A APL1; leucine-rich repe 99.9 2.4E-22 8.3E-27 225.8 21.3 304 556-934 43-351 (390)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-22 5.5E-27 241.6 19.7 367 531-933 32-435 (606)
14 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-22 7.9E-27 240.3 20.6 354 531-934 56-460 (606)
15 3oja_B Anopheles plasmodium-re 99.9 3.4E-22 1.2E-26 237.2 20.9 304 556-934 49-357 (597)
16 1o6v_A Internalin A; bacterial 99.9 6.7E-22 2.3E-26 227.6 22.5 320 532-934 47-387 (466)
17 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-22 2.1E-26 231.7 20.7 125 531-674 21-149 (520)
18 3v47_A TOLL-like receptor 5B a 99.9 1.3E-21 4.5E-26 224.9 21.5 362 531-933 30-406 (455)
19 3t6q_A CD180 antigen; protein- 99.9 1.3E-21 4.5E-26 233.7 22.0 144 531-690 33-180 (606)
20 4fmz_A Internalin; leucine ric 99.9 7.6E-22 2.6E-26 218.1 18.5 301 531-909 44-344 (347)
21 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.2E-26 224.6 21.4 318 556-934 44-365 (466)
22 3t6q_A CD180 antigen; protein- 99.9 4.8E-22 1.6E-26 237.5 17.6 335 558-934 33-461 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-21 7.8E-26 228.9 21.2 142 780-933 350-508 (562)
24 2id5_A Lingo-1, leucine rich r 99.9 3.7E-21 1.3E-25 222.4 22.2 296 558-909 32-331 (477)
25 2z63_A TOLL-like receptor 4, v 99.9 9.9E-22 3.4E-26 233.1 17.8 133 780-933 393-529 (570)
26 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-21 5.2E-26 228.4 19.1 364 534-933 3-479 (520)
27 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-21 9.7E-26 234.1 19.6 349 531-933 25-441 (680)
28 2z63_A TOLL-like receptor 4, v 99.9 1.3E-21 4.3E-26 232.2 15.7 143 531-689 28-175 (570)
29 4fcg_A Uncharacterized protein 99.9 4E-21 1.4E-25 209.5 17.9 231 583-931 79-310 (328)
30 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-21 7.2E-26 229.0 16.9 341 531-908 26-420 (549)
31 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.8E-25 218.4 21.1 295 585-934 32-332 (477)
32 3j0a_A TOLL-like receptor 5; m 99.8 4.1E-20 1.4E-24 228.4 26.3 152 531-696 24-183 (844)
33 3o6n_A APL1; leucine-rich repe 99.8 4.9E-21 1.7E-25 215.1 15.9 284 583-934 43-330 (390)
34 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-20 6.2E-25 231.5 22.1 332 557-932 23-391 (844)
35 3bz5_A Internalin-J, INLJ; leu 99.8 2.6E-20 8.7E-25 212.4 20.6 117 556-695 62-178 (457)
36 2z81_A CD282 antigen, TOLL-lik 99.8 9.3E-21 3.2E-25 223.5 16.1 342 558-933 26-421 (549)
37 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-20 5.5E-25 214.1 16.5 310 555-933 39-350 (457)
38 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-20 2.3E-24 221.9 21.3 325 558-932 25-363 (680)
39 3oja_B Anopheles plasmodium-re 99.8 1.8E-20 6.2E-25 222.4 15.8 284 583-934 49-336 (597)
40 3v47_A TOLL-like receptor 5B a 99.8 2.2E-20 7.5E-25 214.7 15.1 332 531-915 54-412 (455)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.3E-20 1.5E-24 218.0 17.9 360 533-933 33-484 (562)
42 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.4E-24 198.6 16.5 290 559-933 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 99.8 3.8E-20 1.3E-24 200.5 9.9 249 558-843 50-302 (313)
44 1xku_A Decorin; proteoglycan, 99.8 4.2E-19 1.4E-23 194.4 17.3 290 559-932 32-329 (330)
45 4fcg_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 192.0 17.7 106 556-673 79-193 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-18 6.1E-23 189.5 20.1 291 533-909 35-331 (332)
47 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.1E-23 208.0 21.3 366 531-933 52-578 (635)
48 1xku_A Decorin; proteoglycan, 99.8 3.6E-18 1.2E-22 187.0 18.5 293 532-908 32-329 (330)
49 1jl5_A Outer protein YOPM; leu 99.8 1.2E-17 4.1E-22 190.2 20.0 178 531-753 91-268 (454)
50 1ogq_A PGIP-2, polygalacturona 99.8 6.7E-19 2.3E-23 190.7 8.3 202 585-843 50-255 (313)
51 1jl5_A Outer protein YOPM; leu 99.7 1.1E-17 3.8E-22 190.4 17.0 326 531-934 11-369 (454)
52 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-17 4.5E-22 195.5 17.7 256 586-934 41-296 (622)
53 4g8a_A TOLL-like receptor 4; l 99.7 2.3E-17 7.9E-22 198.3 18.8 128 558-698 52-184 (635)
54 2z80_A TOLL-like receptor 2, v 99.7 1.7E-17 5.9E-22 183.3 12.9 251 558-843 52-312 (353)
55 2z80_A TOLL-like receptor 2, v 99.7 1.3E-17 4.4E-22 184.3 11.5 273 557-933 30-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.7 3.1E-16 1.1E-20 183.9 19.4 130 531-695 40-169 (622)
57 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 173.2 13.7 124 558-693 28-156 (306)
58 3zyj_A Leucine-rich repeat-con 99.7 9.7E-16 3.3E-20 174.6 21.6 242 587-933 45-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.7 8.9E-16 3.1E-20 175.6 21.0 110 804-933 191-301 (452)
60 3zyi_A Leucine-rich repeat-con 99.7 1.7E-16 5.7E-21 181.7 14.6 149 558-723 75-227 (452)
61 3o53_A Protein LRIM1, AGAP0063 99.7 1E-17 3.6E-22 181.8 4.2 253 573-915 22-279 (317)
62 2z66_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 174.0 11.2 222 585-878 28-258 (306)
63 3zyj_A Leucine-rich repeat-con 99.7 2.1E-16 7.3E-21 180.1 14.3 145 535-697 47-195 (440)
64 1w5s_A Origin recognition comp 99.7 1.7E-15 5.7E-20 171.4 21.0 305 164-483 21-373 (412)
65 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.9E-23 200.8 -5.4 363 531-933 3-409 (461)
66 3o53_A Protein LRIM1, AGAP0063 99.7 9E-18 3.1E-22 182.4 1.9 263 586-937 11-277 (317)
67 3ogk_B Coronatine-insensitive 99.7 1.2E-17 4.2E-22 198.7 2.7 136 556-695 162-301 (592)
68 1ozn_A Reticulon 4 receptor; N 99.6 3.3E-16 1.1E-20 167.3 11.4 81 585-673 32-115 (285)
69 3oja_A Leucine-rich immune mol 99.6 3.8E-17 1.3E-21 187.9 4.1 77 583-673 32-109 (487)
70 2qen_A Walker-type ATPase; unk 99.6 6.5E-15 2.2E-19 162.6 20.9 294 163-502 10-348 (350)
71 3ogk_B Coronatine-insensitive 99.6 1.9E-17 6.4E-22 197.2 0.0 357 531-933 112-499 (592)
72 1ozn_A Reticulon 4 receptor; N 99.6 5.5E-16 1.9E-20 165.7 11.4 127 557-695 31-161 (285)
73 3qfl_A MLA10; coiled-coil, (CC 99.6 4E-16 1.4E-20 138.3 8.2 82 4-89 1-84 (115)
74 2p1m_B Transport inhibitor res 99.6 2.9E-17 9.8E-22 195.7 -0.4 366 531-935 105-519 (594)
75 2fna_A Conserved hypothetical 99.6 9.4E-14 3.2E-18 153.7 25.0 293 163-502 11-356 (357)
76 1wwl_A Monocyte differentiatio 99.6 2.7E-16 9.4E-21 170.2 3.1 125 556-697 41-183 (312)
77 2xwt_C Thyrotropin receptor; s 99.6 1.9E-14 6.5E-19 149.2 16.4 72 604-679 23-96 (239)
78 3oja_A Leucine-rich immune mol 99.6 2.6E-15 9E-20 172.6 9.9 215 556-843 32-248 (487)
79 1z7x_W Ribonuclease inhibitor; 99.6 5.2E-17 1.8E-21 186.9 -4.8 357 531-933 28-438 (461)
80 1h6u_A Internalin H; cell adhe 99.6 7.7E-15 2.6E-19 158.2 11.7 195 583-849 39-233 (308)
81 1wwl_A Monocyte differentiatio 99.6 6.3E-16 2.2E-20 167.3 3.1 103 581-695 39-157 (312)
82 2p1m_B Transport inhibitor res 99.5 4.8E-16 1.6E-20 185.1 -0.8 334 556-934 103-493 (594)
83 2z62_A TOLL-like receptor 4, v 99.5 2.5E-14 8.5E-19 151.9 11.9 127 558-697 28-159 (276)
84 2ast_B S-phase kinase-associat 99.5 2.5E-15 8.4E-20 164.9 3.2 225 559-878 48-282 (336)
85 2ast_B S-phase kinase-associat 99.5 5E-15 1.7E-19 162.4 5.6 125 532-674 48-179 (336)
86 3rfs_A Internalin B, repeat mo 99.5 7.6E-14 2.6E-18 147.6 14.3 80 583-673 39-119 (272)
87 2xwt_C Thyrotropin receptor; s 99.5 8.5E-14 2.9E-18 144.3 11.3 102 559-673 32-140 (239)
88 4ay9_X Follicle-stimulating ho 99.5 1.7E-13 5.8E-18 150.7 13.9 93 602-697 19-114 (350)
89 4ay9_X Follicle-stimulating ho 99.5 4.9E-13 1.7E-17 147.1 17.1 72 618-693 12-85 (350)
90 1fnn_A CDC6P, cell division co 99.5 7E-12 2.4E-16 140.4 26.6 325 165-508 17-386 (389)
91 1p9a_G Platelet glycoprotein I 99.5 2.5E-13 8.5E-18 144.8 13.8 122 555-693 7-130 (290)
92 2o6q_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 142.2 15.0 62 779-843 153-216 (270)
93 2z62_A TOLL-like receptor 4, v 99.5 2.4E-13 8.2E-18 144.3 13.2 80 585-673 28-110 (276)
94 2v1u_A Cell division control p 99.5 7.4E-12 2.5E-16 140.1 25.7 296 165-482 19-352 (387)
95 1h6u_A Internalin H; cell adhe 99.5 4E-13 1.4E-17 144.7 14.7 122 556-696 39-160 (308)
96 2o6q_A Variable lymphocyte rec 99.4 6.3E-13 2.1E-17 140.4 14.9 196 585-879 16-216 (270)
97 2ca6_A RAN GTPase-activating p 99.4 4.4E-15 1.5E-19 166.2 -2.3 89 577-674 24-133 (386)
98 2qby_B CDC6 homolog 3, cell di 99.4 1.7E-11 5.8E-16 136.9 26.4 297 165-483 20-341 (384)
99 3rfs_A Internalin B, repeat mo 99.4 2.3E-13 7.9E-18 143.9 10.0 205 556-833 39-247 (272)
100 1p9a_G Platelet glycoprotein I 99.4 8.3E-13 2.8E-17 140.7 13.4 199 581-843 6-206 (290)
101 4glp_A Monocyte differentiatio 99.4 1.9E-12 6.4E-17 139.8 16.3 228 557-843 63-305 (310)
102 2ca6_A RAN GTPase-activating p 99.4 3.6E-14 1.2E-18 158.7 1.9 116 554-674 28-170 (386)
103 1h6t_A Internalin B; cell adhe 99.4 9.5E-13 3.2E-17 140.5 11.2 79 583-673 44-122 (291)
104 2qby_A CDC6 homolog 1, cell di 99.4 2.1E-11 7.3E-16 136.2 22.0 297 164-482 19-349 (386)
105 1m9s_A Internalin B; cell inva 99.4 9.7E-13 3.3E-17 154.1 10.8 169 582-820 40-208 (605)
106 3m19_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 128.9 13.2 144 535-697 18-165 (251)
107 4glp_A Monocyte differentiatio 99.3 1.1E-11 3.7E-16 133.8 11.8 104 585-692 64-174 (310)
108 3cvr_A Invasion plasmid antige 99.3 1.6E-11 5.4E-16 142.1 13.1 89 585-694 59-147 (571)
109 1h6t_A Internalin B; cell adhe 99.3 2.3E-11 7.8E-16 129.7 13.2 168 556-753 44-211 (291)
110 4ezg_A Putative uncharacterize 99.3 2.3E-11 7.8E-16 121.6 12.3 144 531-695 44-189 (197)
111 1njg_A DNA polymerase III subu 99.3 5.2E-11 1.8E-15 123.8 15.0 200 165-380 23-231 (250)
112 3goz_A Leucine-rich repeat-con 99.2 4E-12 1.4E-16 140.5 6.3 238 556-843 20-295 (362)
113 3e6j_A Variable lymphocyte rec 99.2 2.4E-11 8.3E-16 124.5 11.6 128 557-697 39-169 (229)
114 3goz_A Leucine-rich repeat-con 99.2 1.6E-12 5.5E-17 143.7 2.9 257 573-883 10-298 (362)
115 1xeu_A Internalin C; cellular 99.2 7.7E-12 2.6E-16 131.1 7.6 167 583-843 17-183 (263)
116 4ezg_A Putative uncharacterize 99.2 2E-11 6.9E-16 121.9 10.2 127 556-697 42-169 (197)
117 2ell_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 118.5 9.1 131 556-699 22-159 (168)
118 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.3E-16 117.3 7.3 125 556-694 15-147 (149)
119 3m19_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 124.1 12.2 153 531-699 35-191 (251)
120 2v9t_B SLIT homolog 2 protein 99.2 4.9E-11 1.7E-15 121.3 11.0 127 558-697 32-162 (220)
121 4b8c_D Glucose-repressible alc 99.2 3.5E-11 1.2E-15 144.8 10.7 155 531-699 173-328 (727)
122 1m9s_A Internalin B; cell inva 99.2 4.6E-11 1.6E-15 139.9 11.3 59 611-673 105-163 (605)
123 2chg_A Replication factor C sm 99.2 3.3E-10 1.1E-14 115.8 15.9 186 165-378 17-205 (226)
124 1a9n_A U2A', U2A'; complex (nu 99.1 6.2E-11 2.1E-15 116.0 8.8 128 556-698 17-151 (176)
125 3cvr_A Invasion plasmid antige 99.1 3.8E-11 1.3E-15 139.0 8.0 108 559-694 60-167 (571)
126 1xeu_A Internalin C; cellular 99.1 1.7E-10 5.7E-15 120.9 12.1 144 531-699 41-184 (263)
127 2v70_A SLIT-2, SLIT homolog 2 99.1 1.7E-10 5.8E-15 117.3 11.3 144 535-697 15-163 (220)
128 2o6s_A Variable lymphocyte rec 99.1 2.3E-10 7.7E-15 115.5 12.0 126 557-695 27-156 (208)
129 2ell_A Acidic leucine-rich nuc 99.1 7.4E-11 2.5E-15 114.5 7.9 133 531-682 24-165 (168)
130 2o6s_A Variable lymphocyte rec 99.1 1.8E-10 6.2E-15 116.2 10.0 148 531-700 28-178 (208)
131 2je0_A Acidic leucine-rich nuc 99.1 6.3E-11 2.2E-15 112.4 4.7 107 582-699 14-125 (149)
132 3e6j_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 115.7 10.7 129 531-674 40-170 (229)
133 2xot_A Amphoterin-induced prot 99.0 2.9E-10 1E-14 125.3 9.4 125 558-695 39-171 (361)
134 1dce_A Protein (RAB geranylger 99.0 3.9E-10 1.3E-14 131.3 10.4 118 559-692 442-565 (567)
135 2v70_A SLIT-2, SLIT homolog 2 99.0 5.7E-10 1.9E-14 113.4 10.1 130 531-674 32-164 (220)
136 2v9t_B SLIT homolog 2 protein 99.0 6.5E-10 2.2E-14 112.9 10.5 129 531-674 32-163 (220)
137 1dce_A Protein (RAB geranylger 99.0 4.8E-10 1.7E-14 130.5 9.1 102 586-699 442-545 (567)
138 2xot_A Amphoterin-induced prot 99.0 5.7E-10 2E-14 123.0 7.8 142 531-688 39-188 (361)
139 1hqc_A RUVB; extended AAA-ATPa 99.0 1.8E-09 6.3E-14 117.1 11.2 267 165-480 12-324 (324)
140 1a9n_A U2A', U2A'; complex (nu 99.0 1E-09 3.6E-14 107.2 8.3 126 531-674 19-151 (176)
141 1sxj_B Activator 1 37 kDa subu 98.9 3.7E-09 1.3E-13 114.7 13.1 187 165-379 21-212 (323)
142 3sb4_A Hypothetical leucine ri 98.9 4.5E-09 1.5E-13 114.2 13.6 286 557-928 24-327 (329)
143 4b8c_D Glucose-repressible alc 98.9 5.2E-10 1.8E-14 134.5 6.2 109 554-675 220-328 (727)
144 1w8a_A SLIT protein; signaling 98.9 2.3E-09 7.8E-14 106.3 8.8 103 559-673 30-136 (192)
145 2wfh_A SLIT homolog 2 protein 98.9 5.1E-09 1.7E-13 103.8 11.2 103 558-673 31-136 (193)
146 1w8a_A SLIT protein; signaling 98.9 2.2E-09 7.6E-14 106.4 8.5 122 561-697 11-136 (192)
147 1ds9_A Outer arm dynein; leuci 98.9 1.7E-11 5.7E-16 122.7 -7.6 107 577-695 40-148 (198)
148 1ds9_A Outer arm dynein; leuci 98.9 3.5E-11 1.2E-15 120.3 -5.4 161 581-748 14-180 (198)
149 2wfh_A SLIT homolog 2 protein 98.9 5.3E-09 1.8E-13 103.6 10.1 121 561-697 13-136 (193)
150 2o6r_A Variable lymphocyte rec 98.9 8.8E-09 3E-13 100.7 11.1 104 558-673 28-134 (177)
151 3sb4_A Hypothetical leucine ri 98.8 4.4E-09 1.5E-13 114.3 8.0 105 807-932 200-307 (329)
152 1iqp_A RFCS; clamp loader, ext 98.8 2E-08 6.7E-13 109.1 11.6 186 165-380 25-215 (327)
153 2r9u_A Variable lymphocyte rec 98.8 8.7E-09 3E-13 100.1 7.8 107 561-683 15-124 (174)
154 2r9u_A Variable lymphocyte rec 98.7 1.7E-08 5.8E-13 98.0 8.9 101 587-699 14-117 (174)
155 3te6_A Regulatory protein SIR3 98.7 1.9E-07 6.5E-12 98.5 16.9 175 165-345 20-213 (318)
156 3g39_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 96.9 8.8 80 585-673 30-112 (170)
157 2o6r_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 96.4 9.6 121 561-697 10-134 (177)
158 1jr3_A DNA polymerase III subu 98.7 8.1E-08 2.8E-12 106.4 12.9 198 165-378 16-222 (373)
159 3g39_A Variable lymphocyte rec 98.7 4.6E-08 1.6E-12 94.6 8.8 101 587-699 11-114 (170)
160 2chq_A Replication factor C sm 98.6 1.5E-07 5.1E-12 101.7 13.0 184 165-378 17-205 (319)
161 1jbk_A CLPB protein; beta barr 98.5 6.6E-07 2.2E-11 88.5 11.0 153 165-339 22-194 (195)
162 3pfi_A Holliday junction ATP-d 98.4 3.4E-06 1.2E-10 91.7 16.3 179 164-377 28-227 (338)
163 3bos_A Putative DNA replicatio 98.4 3.4E-07 1.2E-11 94.4 7.8 175 165-378 28-218 (242)
164 1sxj_D Activator 1 41 kDa subu 98.4 1.2E-06 4.2E-11 96.0 12.0 196 165-377 37-235 (353)
165 4fdw_A Leucine rich hypothetic 98.4 1.2E-05 4E-10 89.2 19.3 139 783-950 248-394 (401)
166 3pvs_A Replication-associated 98.4 4.8E-06 1.6E-10 93.2 15.9 180 165-377 26-215 (447)
167 4fdw_A Leucine rich hypothetic 98.4 1.3E-05 4.4E-10 88.8 19.3 242 578-907 129-379 (401)
168 2ifg_A High affinity nerve gro 98.3 9.5E-07 3.3E-11 96.6 8.8 88 577-673 24-113 (347)
169 3h4m_A Proteasome-activating n 98.3 8.1E-06 2.8E-10 86.3 14.8 186 164-376 16-230 (285)
170 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.5E-05 8.5E-10 81.4 16.8 188 165-377 6-222 (262)
171 1sxj_E Activator 1 40 kDa subu 98.2 9.2E-06 3.1E-10 89.0 13.8 197 165-378 14-238 (354)
172 3uk6_A RUVB-like 2; hexameric 98.2 9.3E-06 3.2E-10 89.5 13.4 201 165-377 44-303 (368)
173 2ifg_A High affinity nerve gro 98.2 2.1E-06 7.1E-11 93.8 8.0 75 604-682 21-98 (347)
174 3u61_B DNA polymerase accessor 98.2 8.2E-06 2.8E-10 88.1 12.4 181 165-377 26-216 (324)
175 1sxj_A Activator 1 95 kDa subu 98.2 1.3E-05 4.6E-10 92.0 14.6 197 165-378 39-254 (516)
176 2z4s_A Chromosomal replication 98.2 1.6E-05 5.4E-10 89.2 14.6 181 192-395 130-331 (440)
177 1a5t_A Delta prime, HOLB; zinc 98.2 2.4E-05 8.4E-10 84.4 15.5 173 171-377 8-205 (334)
178 4fs7_A Uncharacterized protein 98.1 5.7E-05 2E-09 83.9 17.3 302 554-931 67-375 (394)
179 1d2n_A N-ethylmaleimide-sensit 98.1 3.8E-05 1.3E-09 80.4 14.9 171 165-368 33-228 (272)
180 3syl_A Protein CBBX; photosynt 98.1 1.8E-05 6E-10 84.8 12.1 161 166-344 32-218 (309)
181 2p65_A Hypothetical protein PF 98.1 7.8E-06 2.7E-10 80.1 8.5 45 165-215 22-66 (187)
182 3eie_A Vacuolar protein sortin 98.0 7.5E-05 2.6E-09 80.2 16.1 188 165-378 18-229 (322)
183 1sxj_C Activator 1 40 kDa subu 98.0 2.9E-05 1E-09 84.2 12.9 179 165-373 25-208 (340)
184 3n70_A Transport activator; si 98.0 6.7E-06 2.3E-10 76.8 5.9 113 166-312 2-115 (145)
185 3d8b_A Fidgetin-like protein 1 98.0 6.8E-05 2.3E-09 81.7 14.4 188 165-378 84-296 (357)
186 1l8q_A Chromosomal replication 97.9 7.5E-05 2.6E-09 80.4 14.1 157 191-373 36-204 (324)
187 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00024 8.2E-09 76.0 17.3 189 165-378 12-224 (322)
188 2qp9_X Vacuolar protein sortin 97.9 9.2E-05 3.1E-09 80.5 14.2 188 165-378 51-262 (355)
189 3e4g_A ATP synthase subunit S, 97.9 1.6E-06 5.6E-11 82.3 0.1 67 866-937 83-154 (176)
190 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 80.4 2.0 93 809-913 61-154 (176)
191 3b9p_A CG5977-PA, isoform A; A 97.9 0.00024 8.2E-09 75.3 16.8 187 165-377 21-233 (297)
192 3un9_A NLR family member X1; l 97.9 2.4E-06 8.2E-11 93.7 0.9 108 557-673 71-193 (372)
193 2ra8_A Uncharacterized protein 97.9 5.6E-06 1.9E-10 90.0 3.7 88 580-671 134-227 (362)
194 3rw6_A Nuclear RNA export fact 97.8 1.2E-05 4.2E-10 82.6 5.4 88 573-669 158-257 (267)
195 4fs7_A Uncharacterized protein 97.8 0.00082 2.8E-08 74.4 19.2 284 577-930 63-351 (394)
196 3un9_A NLR family member X1; l 97.7 1.6E-05 5.6E-10 87.1 4.7 137 531-673 101-249 (372)
197 2ra8_A Uncharacterized protein 97.7 1.1E-05 3.6E-10 87.8 2.9 133 531-673 107-262 (362)
198 2w58_A DNAI, primosome compone 97.7 4.5E-05 1.5E-09 75.8 7.2 118 173-312 37-158 (202)
199 3vfd_A Spastin; ATPase, microt 97.7 0.00043 1.5E-08 76.4 15.6 188 164-377 114-326 (389)
200 4b4t_K 26S protease regulatory 97.7 0.00046 1.6E-08 75.8 15.4 178 165-369 172-378 (428)
201 2gno_A DNA polymerase III, gam 97.7 0.00012 4.2E-09 77.2 10.5 148 169-343 1-152 (305)
202 2zan_A Vacuolar protein sortin 97.7 0.00071 2.4E-08 75.8 17.2 189 165-378 134-346 (444)
203 1qvr_A CLPB protein; coiled co 97.7 4.6E-05 1.6E-09 93.2 8.1 154 165-342 170-344 (854)
204 3cf0_A Transitional endoplasmi 97.7 0.00047 1.6E-08 73.0 14.5 181 165-372 15-223 (301)
205 3co5_A Putative two-component 97.6 1.9E-05 6.7E-10 73.4 2.9 110 166-312 5-115 (143)
206 3ec2_A DNA replication protein 97.6 3.8E-05 1.3E-09 74.7 5.0 121 170-312 19-142 (180)
207 1io0_A Tropomodulin; LRR prote 97.6 0.0001 3.4E-09 72.0 8.0 116 554-673 32-161 (185)
208 1in4_A RUVB, holliday junction 97.6 0.002 6.7E-08 69.4 18.8 178 165-377 25-223 (334)
209 4b4t_J 26S protease regulatory 97.6 0.00091 3.1E-08 72.2 15.9 179 165-370 148-354 (405)
210 4fcw_A Chaperone protein CLPB; 97.6 0.00021 7.1E-09 76.4 10.9 137 166-312 18-169 (311)
211 3hu3_A Transitional endoplasmi 97.6 0.00021 7.1E-09 80.7 11.0 185 165-376 204-414 (489)
212 3pxg_A Negative regulator of g 97.6 0.00014 4.9E-09 82.1 9.3 146 166-343 181-338 (468)
213 4b4t_L 26S protease subunit RP 97.5 0.0012 4.2E-08 72.5 16.1 179 165-370 181-387 (437)
214 4gt6_A Cell surface protein; l 97.5 0.0027 9.2E-08 70.2 19.0 105 556-672 61-169 (394)
215 1ofh_A ATP-dependent HSL prote 97.5 0.00031 1.1E-08 75.0 10.5 51 165-215 15-73 (310)
216 2c9o_A RUVB-like 1; hexameric 97.5 0.00041 1.4E-08 78.3 11.6 98 275-377 297-410 (456)
217 1ojl_A Transcriptional regulat 97.4 0.00031 1E-08 74.5 8.8 47 165-215 2-48 (304)
218 1lv7_A FTSH; alpha/beta domain 97.4 0.0023 7.9E-08 66.0 15.2 184 165-375 12-223 (257)
219 2bjv_A PSP operon transcriptio 97.4 0.00024 8.2E-09 73.9 7.6 46 166-215 7-52 (265)
220 4b4t_H 26S protease regulatory 97.3 0.0022 7.6E-08 70.2 14.8 179 165-370 209-415 (467)
221 1io0_A Tropomodulin; LRR prote 97.3 8.9E-05 3E-09 72.3 3.3 95 575-673 26-133 (185)
222 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00088 3E-08 81.1 12.6 158 165-343 186-362 (758)
223 4b4t_M 26S protease regulatory 97.3 0.00088 3E-08 73.6 11.1 178 165-369 181-386 (434)
224 4gt6_A Cell surface protein; l 97.3 0.0019 6.6E-08 71.4 13.9 109 553-673 82-192 (394)
225 4b4t_I 26S protease regulatory 97.3 0.0028 9.7E-08 68.6 14.4 179 165-370 182-388 (437)
226 3rw6_A Nuclear RNA export fact 97.2 0.00026 8.9E-09 72.7 5.6 83 612-697 167-261 (267)
227 2kjq_A DNAA-related protein; s 97.2 0.00016 5.5E-09 67.4 3.3 39 192-232 36-74 (149)
228 3pxi_A Negative regulator of g 97.2 0.00055 1.9E-08 82.7 8.8 149 165-343 180-338 (758)
229 2r62_A Cell division protease 97.2 0.00044 1.5E-08 72.0 6.6 180 165-371 11-219 (268)
230 3pxi_A Negative regulator of g 97.1 0.00085 2.9E-08 81.0 9.7 155 165-342 491-674 (758)
231 3m6a_A ATP-dependent protease 97.1 0.0016 5.3E-08 75.0 10.9 165 165-343 81-266 (543)
232 2ce7_A Cell division protein F 97.0 0.01 3.4E-07 66.3 16.1 179 165-370 16-221 (476)
233 3cf2_A TER ATPase, transitiona 96.9 0.0072 2.5E-07 71.6 13.9 179 165-370 204-407 (806)
234 2r44_A Uncharacterized protein 96.8 0.0047 1.6E-07 66.4 10.9 152 165-344 27-199 (331)
235 2qgz_A Helicase loader, putati 96.7 0.001 3.6E-08 70.4 4.6 55 172-230 135-189 (308)
236 3t15_A Ribulose bisphosphate c 96.7 0.0061 2.1E-07 64.0 10.4 26 190-215 34-59 (293)
237 2cvh_A DNA repair and recombin 96.7 0.0048 1.7E-07 61.7 9.2 86 191-283 19-115 (220)
238 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0025 8.6E-08 77.1 7.7 133 165-312 458-607 (758)
239 4h09_A Hypothetical leucine ri 96.6 0.032 1.1E-06 61.1 15.9 78 556-648 44-122 (379)
240 1jr3_D DNA polymerase III, del 96.5 0.018 6.1E-07 62.1 13.3 159 191-376 17-184 (343)
241 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.011 3.7E-07 66.6 11.7 42 166-215 23-64 (500)
242 1qvr_A CLPB protein; coiled co 96.4 0.0063 2.2E-07 74.3 9.8 138 166-312 559-710 (854)
243 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0016 5.6E-08 67.7 3.3 70 191-284 122-193 (331)
244 4h09_A Hypothetical leucine ri 96.3 0.052 1.8E-06 59.4 15.8 80 581-673 42-123 (379)
245 2x8a_A Nuclear valosin-contain 96.2 0.035 1.2E-06 57.4 12.4 156 165-343 10-191 (274)
246 1iy2_A ATP-dependent metallopr 96.0 0.056 1.9E-06 56.2 13.2 52 164-215 39-96 (278)
247 1um8_A ATP-dependent CLP prote 96.0 0.021 7.3E-07 62.4 10.3 50 166-215 22-95 (376)
248 1n0w_A DNA repair protein RAD5 95.9 0.021 7.3E-07 57.9 9.4 92 191-283 23-129 (243)
249 2dhr_A FTSH; AAA+ protein, hex 95.9 0.12 4.1E-06 58.0 16.0 179 165-370 31-236 (499)
250 1ypw_A Transitional endoplasmi 95.8 0.035 1.2E-06 66.9 11.7 157 165-343 204-385 (806)
251 3hr8_A Protein RECA; alpha and 95.7 0.013 4.3E-07 62.8 6.7 86 191-283 60-149 (356)
252 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.017 5.8E-07 58.3 7.4 117 192-313 23-168 (235)
253 1g5t_A COB(I)alamin adenosyltr 95.6 0.0089 3E-07 57.5 4.5 120 192-313 28-163 (196)
254 1v5w_A DMC1, meiotic recombina 95.6 0.027 9.4E-07 60.4 8.9 57 191-248 121-181 (343)
255 2z43_A DNA repair and recombin 95.6 0.036 1.2E-06 59.0 9.6 91 191-282 106-212 (324)
256 2i1q_A DNA repair and recombin 95.5 0.03 1E-06 59.7 8.9 91 191-282 97-213 (322)
257 2cbz_A Multidrug resistance-as 95.4 0.072 2.5E-06 53.7 10.7 24 192-215 31-54 (237)
258 3io5_A Recombination and repai 95.4 0.039 1.3E-06 57.2 8.5 85 193-284 29-122 (333)
259 1rz3_A Hypothetical protein rb 95.3 0.018 6E-07 56.7 5.8 42 170-214 3-44 (201)
260 2b8t_A Thymidine kinase; deoxy 95.2 0.0087 3E-07 59.5 3.1 113 191-312 11-125 (223)
261 2zr9_A Protein RECA, recombina 95.1 0.041 1.4E-06 59.0 8.2 87 191-284 60-150 (349)
262 1xp8_A RECA protein, recombina 95.1 0.044 1.5E-06 59.0 8.3 85 191-283 73-162 (366)
263 1cr0_A DNA primase/helicase; R 95.1 0.034 1.2E-06 58.4 7.4 39 191-231 34-73 (296)
264 1odf_A YGR205W, hypothetical 3 94.9 0.1 3.5E-06 54.3 10.4 26 190-215 29-54 (290)
265 2pze_A Cystic fibrosis transme 94.9 0.15 5.3E-06 50.9 11.4 24 192-215 34-57 (229)
266 1u94_A RECA protein, recombina 94.8 0.059 2E-06 57.8 8.3 86 191-283 62-151 (356)
267 4a74_A DNA repair and recombin 94.8 0.091 3.1E-06 52.6 9.4 56 191-247 24-83 (231)
268 2pjz_A Hypothetical protein ST 94.7 0.12 3.9E-06 53.0 9.9 24 192-215 30-53 (263)
269 3c8u_A Fructokinase; YP_612366 94.7 0.024 8.2E-07 56.0 4.6 38 173-214 7-44 (208)
270 3lda_A DNA repair protein RAD5 94.5 0.06 2E-06 58.7 7.6 92 191-283 177-283 (400)
271 1zp6_A Hypothetical protein AT 94.3 0.026 9E-07 54.8 3.9 25 191-215 8-32 (191)
272 3tqc_A Pantothenate kinase; bi 94.3 0.039 1.3E-06 58.0 5.4 46 167-214 69-114 (321)
273 1gvn_B Zeta; postsegregational 94.2 0.042 1.4E-06 57.3 5.5 41 173-214 15-55 (287)
274 1pzn_A RAD51, DNA repair and r 94.2 0.067 2.3E-06 57.4 7.2 91 191-283 130-241 (349)
275 4akg_A Glutathione S-transfera 94.2 0.53 1.8E-05 63.3 16.9 139 193-343 1268-1431(2695)
276 1qhx_A CPT, protein (chloramph 94.0 0.023 7.8E-07 54.5 2.8 22 193-214 4-25 (178)
277 3ice_A Transcription terminati 94.0 0.036 1.2E-06 58.9 4.4 54 175-234 162-216 (422)
278 3lw7_A Adenylate kinase relate 94.0 0.025 8.7E-07 54.0 3.1 20 193-212 2-21 (179)
279 3bh0_A DNAB-like replicative h 93.9 0.17 5.8E-06 53.5 9.6 53 191-247 67-119 (315)
280 1kgd_A CASK, peripheral plasma 93.9 0.028 9.4E-07 54.1 3.1 23 192-214 5-27 (180)
281 3vaa_A Shikimate kinase, SK; s 93.9 0.028 9.5E-07 55.1 3.0 23 192-214 25-47 (199)
282 3uie_A Adenylyl-sulfate kinase 93.8 0.037 1.3E-06 54.3 3.9 25 191-215 24-48 (200)
283 3kb2_A SPBC2 prophage-derived 93.8 0.027 9.4E-07 53.6 2.9 22 193-214 2-23 (173)
284 2orw_A Thymidine kinase; TMTK, 93.8 0.014 4.8E-07 56.3 0.7 22 193-214 4-25 (184)
285 3hws_A ATP-dependent CLP prote 93.8 0.044 1.5E-06 59.5 4.8 50 166-215 16-74 (363)
286 2px0_A Flagellar biosynthesis 93.8 0.11 3.8E-06 54.2 7.6 25 191-215 104-128 (296)
287 2p5t_B PEZT; postsegregational 93.8 0.048 1.6E-06 55.8 4.7 41 173-214 14-54 (253)
288 1ly1_A Polynucleotide kinase; 93.8 0.032 1.1E-06 53.6 3.3 22 193-214 3-24 (181)
289 3cf2_A TER ATPase, transitiona 93.7 0.061 2.1E-06 63.8 6.0 52 164-215 476-534 (806)
290 3dm5_A SRP54, signal recogniti 93.6 0.69 2.4E-05 50.7 13.8 24 191-214 99-122 (443)
291 1sky_E F1-ATPase, F1-ATP synth 93.5 0.095 3.2E-06 57.7 6.8 50 193-243 152-202 (473)
292 1ixz_A ATP-dependent metallopr 93.5 0.079 2.7E-06 54.1 5.9 51 165-215 16-72 (254)
293 1kag_A SKI, shikimate kinase I 93.4 0.032 1.1E-06 53.2 2.6 22 193-214 5-26 (173)
294 1knq_A Gluconate kinase; ALFA/ 93.4 0.054 1.8E-06 51.7 4.2 24 191-214 7-30 (175)
295 4gp7_A Metallophosphoesterase; 93.4 0.038 1.3E-06 52.6 3.0 24 191-214 8-31 (171)
296 3trf_A Shikimate kinase, SK; a 93.3 0.036 1.2E-06 53.5 2.8 23 192-214 5-27 (185)
297 3tau_A Guanylate kinase, GMP k 93.3 0.045 1.5E-06 54.1 3.5 25 191-215 7-31 (208)
298 4eun_A Thermoresistant glucoki 93.3 0.043 1.5E-06 53.8 3.3 24 191-214 28-51 (200)
299 1ye8_A Protein THEP1, hypothet 93.3 0.043 1.5E-06 52.5 3.2 22 194-215 2-23 (178)
300 2rhm_A Putative kinase; P-loop 93.2 0.047 1.6E-06 53.1 3.5 24 191-214 4-27 (193)
301 3tr0_A Guanylate kinase, GMP k 93.2 0.046 1.6E-06 53.7 3.5 23 192-214 7-29 (205)
302 3asz_A Uridine kinase; cytidin 93.2 0.05 1.7E-06 53.8 3.7 24 191-214 5-28 (211)
303 3rfe_A Platelet glycoprotein I 93.2 0.12 4E-06 46.4 5.8 46 602-650 18-66 (130)
304 3a00_A Guanylate kinase, GMP k 93.2 0.036 1.2E-06 53.6 2.6 22 193-214 2-23 (186)
305 3kl4_A SRP54, signal recogniti 93.2 0.7 2.4E-05 50.6 13.0 25 191-215 96-120 (433)
306 2bdt_A BH3686; alpha-beta prot 93.1 0.049 1.7E-06 52.8 3.4 22 193-214 3-24 (189)
307 2qt1_A Nicotinamide riboside k 93.1 0.062 2.1E-06 52.9 4.2 25 191-215 20-44 (207)
308 3t61_A Gluconokinase; PSI-biol 93.1 0.038 1.3E-06 54.2 2.7 23 192-214 18-40 (202)
309 2ga8_A Hypothetical 39.9 kDa p 93.1 0.089 3E-06 55.7 5.5 45 168-214 2-46 (359)
310 1nks_A Adenylate kinase; therm 93.0 0.048 1.6E-06 53.0 3.1 23 193-215 2-24 (194)
311 1ex7_A Guanylate kinase; subst 92.9 0.037 1.3E-06 53.1 2.2 22 193-214 2-23 (186)
312 2qor_A Guanylate kinase; phosp 92.9 0.042 1.4E-06 54.0 2.6 25 191-215 11-35 (204)
313 3fwy_A Light-independent proto 92.9 0.057 1.9E-06 56.9 3.7 25 190-214 46-70 (314)
314 2ck3_D ATP synthase subunit be 92.9 0.3 1E-05 53.6 9.4 65 176-246 142-207 (482)
315 1lvg_A Guanylate kinase, GMP k 92.8 0.042 1.5E-06 53.7 2.5 22 193-214 5-26 (198)
316 1zuh_A Shikimate kinase; alpha 92.8 0.048 1.6E-06 51.7 2.8 25 190-214 5-29 (168)
317 1uf9_A TT1252 protein; P-loop, 92.8 0.059 2E-06 52.8 3.5 25 190-214 6-30 (203)
318 2j41_A Guanylate kinase; GMP, 92.8 0.059 2E-06 53.0 3.5 24 192-215 6-29 (207)
319 3iij_A Coilin-interacting nucl 92.7 0.048 1.6E-06 52.4 2.7 24 191-214 10-33 (180)
320 2ze6_A Isopentenyl transferase 92.7 0.053 1.8E-06 55.3 3.1 22 193-214 2-23 (253)
321 1g8p_A Magnesium-chelatase 38 92.7 0.054 1.9E-06 58.4 3.3 45 165-215 24-68 (350)
322 1y63_A LMAJ004144AAA protein; 92.7 0.063 2.2E-06 51.7 3.5 24 191-214 9-32 (184)
323 1ukz_A Uridylate kinase; trans 92.6 0.067 2.3E-06 52.5 3.7 24 191-214 14-37 (203)
324 1kht_A Adenylate kinase; phosp 92.6 0.053 1.8E-06 52.6 2.9 22 193-214 4-25 (192)
325 3aez_A Pantothenate kinase; tr 92.6 0.072 2.5E-06 56.1 4.1 25 190-214 88-112 (312)
326 1htw_A HI0065; nucleotide-bind 92.6 0.076 2.6E-06 49.6 3.8 24 191-214 32-55 (158)
327 2if2_A Dephospho-COA kinase; a 92.6 0.054 1.9E-06 53.2 2.9 22 193-214 2-23 (204)
328 1jjv_A Dephospho-COA kinase; P 92.6 0.066 2.2E-06 52.7 3.5 22 193-214 3-24 (206)
329 2yvu_A Probable adenylyl-sulfa 92.5 0.075 2.6E-06 51.3 3.8 25 191-215 12-36 (186)
330 1rj9_A FTSY, signal recognitio 92.5 0.068 2.3E-06 56.0 3.6 24 191-214 101-124 (304)
331 1znw_A Guanylate kinase, GMP k 92.5 0.063 2.1E-06 52.9 3.2 24 191-214 19-42 (207)
332 3ney_A 55 kDa erythrocyte memb 92.5 0.067 2.3E-06 51.8 3.3 24 191-214 18-41 (197)
333 2jaq_A Deoxyguanosine kinase; 92.5 0.057 1.9E-06 53.0 2.9 21 194-214 2-22 (205)
334 3umf_A Adenylate kinase; rossm 92.5 0.077 2.6E-06 52.4 3.8 26 190-215 27-52 (217)
335 2c95_A Adenylate kinase 1; tra 92.5 0.063 2.1E-06 52.3 3.2 24 191-214 8-31 (196)
336 1tev_A UMP-CMP kinase; ploop, 92.4 0.065 2.2E-06 52.1 3.3 23 192-214 3-25 (196)
337 1cke_A CK, MSSA, protein (cyti 92.4 0.057 2E-06 54.1 2.9 22 193-214 6-27 (227)
338 3tif_A Uncharacterized ABC tra 92.4 0.095 3.3E-06 52.7 4.5 34 192-228 31-64 (235)
339 1xjc_A MOBB protein homolog; s 92.4 0.07 2.4E-06 50.2 3.2 25 191-215 3-27 (169)
340 2bbw_A Adenylate kinase 4, AK4 92.4 0.067 2.3E-06 54.4 3.3 23 192-214 27-49 (246)
341 1via_A Shikimate kinase; struc 92.4 0.051 1.7E-06 51.9 2.3 21 194-214 6-26 (175)
342 2hf9_A Probable hydrogenase ni 92.3 0.089 3E-06 52.6 4.1 25 191-215 37-61 (226)
343 2jeo_A Uridine-cytidine kinase 92.3 0.082 2.8E-06 53.7 3.9 24 191-214 24-47 (245)
344 2onk_A Molybdate/tungstate ABC 92.3 0.11 3.6E-06 52.5 4.6 25 190-215 23-47 (240)
345 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.072 2.5E-06 54.6 3.4 23 192-214 4-26 (260)
346 3tlx_A Adenylate kinase 2; str 92.2 0.12 4E-06 52.4 4.9 24 191-214 28-51 (243)
347 1z6g_A Guanylate kinase; struc 92.1 0.064 2.2E-06 53.3 2.8 23 192-214 23-45 (218)
348 2pcj_A ABC transporter, lipopr 92.1 0.11 3.7E-06 51.8 4.4 23 192-214 30-52 (224)
349 3gfo_A Cobalt import ATP-bindi 92.0 0.11 3.7E-06 53.5 4.5 23 192-214 34-56 (275)
350 1s96_A Guanylate kinase, GMP k 92.0 0.079 2.7E-06 52.6 3.3 25 191-215 15-39 (219)
351 2yhs_A FTSY, cell division pro 92.0 0.68 2.3E-05 51.3 10.9 43 190-235 291-333 (503)
352 3cm0_A Adenylate kinase; ATP-b 92.0 0.077 2.6E-06 51.1 3.1 22 193-214 5-26 (186)
353 2iyv_A Shikimate kinase, SK; t 92.0 0.055 1.9E-06 52.2 2.0 21 194-214 4-24 (184)
354 2cdn_A Adenylate kinase; phosp 92.0 0.085 2.9E-06 51.6 3.4 24 191-214 19-42 (201)
355 1uj2_A Uridine-cytidine kinase 91.9 0.082 2.8E-06 53.9 3.4 25 190-214 20-44 (252)
356 1sq5_A Pantothenate kinase; P- 91.9 0.17 5.8E-06 53.3 5.9 25 190-214 78-102 (308)
357 2plr_A DTMP kinase, probable t 91.9 0.085 2.9E-06 52.1 3.4 24 192-215 4-27 (213)
358 1b0u_A Histidine permease; ABC 91.9 0.12 4E-06 53.0 4.5 24 191-214 31-54 (262)
359 2bwj_A Adenylate kinase 5; pho 91.9 0.074 2.5E-06 51.9 2.9 23 192-214 12-34 (199)
360 3rfe_A Platelet glycoprotein I 91.8 0.21 7.1E-06 44.8 5.6 53 618-674 11-66 (130)
361 1e6c_A Shikimate kinase; phosp 91.8 0.063 2.2E-06 51.0 2.2 22 193-214 3-24 (173)
362 1qf9_A UMP/CMP kinase, protein 91.8 0.1 3.5E-06 50.5 3.8 23 192-214 6-28 (194)
363 4e22_A Cytidylate kinase; P-lo 91.7 0.091 3.1E-06 53.6 3.5 23 192-214 27-49 (252)
364 2pez_A Bifunctional 3'-phospho 91.7 0.095 3.2E-06 50.2 3.4 24 191-214 4-27 (179)
365 2ffh_A Protein (FFH); SRP54, s 91.7 0.37 1.3E-05 52.7 8.4 25 191-215 97-121 (425)
366 2pt5_A Shikimate kinase, SK; a 91.7 0.082 2.8E-06 49.9 2.9 21 194-214 2-22 (168)
367 3cmu_A Protein RECA, recombina 91.7 0.13 4.3E-06 66.8 5.3 86 191-283 1426-1515(2050)
368 1ls1_A Signal recognition part 91.6 0.42 1.4E-05 49.8 8.5 24 192-215 98-121 (295)
369 2grj_A Dephospho-COA kinase; T 91.6 0.095 3.2E-06 50.7 3.2 25 190-214 10-34 (192)
370 3l0o_A Transcription terminati 91.6 0.39 1.3E-05 51.0 8.0 54 174-233 162-216 (427)
371 2i3b_A HCR-ntpase, human cance 91.6 0.078 2.7E-06 51.2 2.6 22 194-215 3-24 (189)
372 2wsm_A Hydrogenase expression/ 91.5 0.097 3.3E-06 52.1 3.4 40 170-215 14-53 (221)
373 2olj_A Amino acid ABC transpor 91.5 0.14 4.7E-06 52.4 4.5 25 191-215 49-73 (263)
374 3b9q_A Chloroplast SRP recepto 91.5 0.11 3.6E-06 54.5 3.7 25 191-215 99-123 (302)
375 1nn5_A Similar to deoxythymidy 91.5 0.094 3.2E-06 51.9 3.2 24 192-215 9-32 (215)
376 4g1u_C Hemin import ATP-bindin 91.5 0.13 4.6E-06 52.6 4.4 23 192-214 37-59 (266)
377 1ji0_A ABC transporter; ATP bi 91.5 0.14 4.8E-06 51.6 4.5 24 192-215 32-55 (240)
378 2vli_A Antibiotic resistance p 91.5 0.061 2.1E-06 51.7 1.8 23 192-214 5-27 (183)
379 1sgw_A Putative ABC transporte 91.5 0.12 4.1E-06 51.0 3.9 24 192-215 35-58 (214)
380 2ff7_A Alpha-hemolysin translo 91.4 0.14 4.9E-06 51.8 4.5 24 192-215 35-58 (247)
381 2ged_A SR-beta, signal recogni 91.4 0.15 5E-06 49.4 4.4 26 190-215 46-71 (193)
382 2pbr_A DTMP kinase, thymidylat 91.4 0.091 3.1E-06 51.0 2.9 21 194-214 2-22 (195)
383 1vpl_A ABC transporter, ATP-bi 91.4 0.14 5E-06 52.0 4.5 24 192-215 41-64 (256)
384 2f1r_A Molybdopterin-guanine d 91.3 0.067 2.3E-06 50.7 1.8 23 193-215 3-25 (171)
385 2f6r_A COA synthase, bifunctio 91.3 0.12 4.1E-06 53.6 3.9 24 191-214 74-97 (281)
386 1g6h_A High-affinity branched- 91.3 0.15 5E-06 52.1 4.5 24 192-215 33-56 (257)
387 1aky_A Adenylate kinase; ATP:A 91.3 0.098 3.3E-06 52.1 3.1 23 192-214 4-26 (220)
388 1tue_A Replication protein E1; 91.3 0.14 4.7E-06 49.4 3.9 37 174-215 45-81 (212)
389 2wwf_A Thymidilate kinase, put 91.2 0.099 3.4E-06 51.6 3.1 25 191-215 9-33 (212)
390 2xxa_A Signal recognition part 91.2 0.43 1.5E-05 52.5 8.4 26 190-215 98-123 (433)
391 2ixe_A Antigen peptide transpo 91.2 0.15 5.2E-06 52.4 4.5 25 191-215 44-68 (271)
392 3e70_C DPA, signal recognition 91.2 0.13 4.5E-06 54.4 4.1 25 191-215 128-152 (328)
393 1mv5_A LMRA, multidrug resista 91.2 0.18 6.1E-06 51.0 4.9 24 191-214 27-50 (243)
394 1zd8_A GTP:AMP phosphotransfer 91.1 0.098 3.4E-06 52.4 2.9 24 191-214 6-29 (227)
395 1m7g_A Adenylylsulfate kinase; 91.0 0.12 4.2E-06 50.9 3.5 25 191-215 24-48 (211)
396 2ehv_A Hypothetical protein PH 91.0 0.11 3.8E-06 52.8 3.2 24 191-214 29-52 (251)
397 2yz2_A Putative ABC transporte 90.9 0.17 5.7E-06 52.0 4.5 24 192-215 33-56 (266)
398 2z0h_A DTMP kinase, thymidylat 90.9 0.11 3.7E-06 50.6 2.9 22 194-215 2-23 (197)
399 3b85_A Phosphate starvation-in 90.9 0.092 3.1E-06 51.6 2.4 22 193-214 23-44 (208)
400 3dzd_A Transcriptional regulat 90.9 0.36 1.2E-05 52.1 7.3 47 165-215 129-175 (368)
401 1vma_A Cell division protein F 90.9 0.14 4.9E-06 53.5 3.9 25 191-215 103-127 (306)
402 3fb4_A Adenylate kinase; psych 90.8 0.11 3.8E-06 51.5 2.9 21 194-214 2-22 (216)
403 1zak_A Adenylate kinase; ATP:A 90.8 0.1 3.4E-06 52.1 2.7 23 192-214 5-27 (222)
404 3p32_A Probable GTPase RV1496/ 90.8 0.24 8.3E-06 53.3 5.9 37 174-214 65-101 (355)
405 3lnc_A Guanylate kinase, GMP k 90.8 0.08 2.7E-06 53.2 1.9 23 192-214 27-50 (231)
406 1g41_A Heat shock protein HSLU 90.8 0.17 5.9E-06 55.5 4.6 51 165-215 15-73 (444)
407 2v54_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 50.6 3.2 24 192-215 4-27 (204)
408 1vht_A Dephospho-COA kinase; s 90.8 0.14 4.6E-06 50.9 3.5 23 192-214 4-26 (218)
409 4a1f_A DNAB helicase, replicat 90.7 0.71 2.4E-05 48.8 9.2 53 191-247 45-97 (338)
410 1fx0_B ATP synthase beta chain 90.7 0.62 2.1E-05 51.3 8.9 64 176-245 154-218 (498)
411 2ihy_A ABC transporter, ATP-bi 90.7 0.18 6.2E-06 52.0 4.5 24 192-215 47-70 (279)
412 2og2_A Putative signal recogni 90.7 0.14 4.8E-06 54.7 3.7 25 191-215 156-180 (359)
413 1gtv_A TMK, thymidylate kinase 90.6 0.065 2.2E-06 53.1 1.0 22 194-215 2-23 (214)
414 3a8t_A Adenylate isopentenyltr 90.6 0.16 5.4E-06 53.4 4.0 25 191-215 39-63 (339)
415 3dl0_A Adenylate kinase; phosp 90.6 0.12 4.1E-06 51.2 2.9 21 194-214 2-22 (216)
416 3nwj_A ATSK2; P loop, shikimat 90.6 0.096 3.3E-06 53.1 2.2 23 192-214 48-70 (250)
417 2q6t_A DNAB replication FORK h 90.5 0.68 2.3E-05 51.5 9.4 54 191-247 199-252 (444)
418 1np6_A Molybdopterin-guanine d 90.4 0.13 4.5E-06 48.8 2.9 25 191-215 5-29 (174)
419 1yrb_A ATP(GTP)binding protein 90.4 0.18 6.1E-06 51.7 4.2 26 189-214 11-36 (262)
420 3d3q_A TRNA delta(2)-isopenten 90.4 0.13 4.5E-06 54.2 3.2 22 193-214 8-29 (340)
421 1j8m_F SRP54, signal recogniti 90.4 0.65 2.2E-05 48.3 8.5 24 192-215 98-121 (297)
422 2d2e_A SUFC protein; ABC-ATPas 90.3 0.14 4.8E-06 52.0 3.2 23 192-214 29-51 (250)
423 1tf7_A KAIC; homohexamer, hexa 90.2 0.22 7.4E-06 56.9 5.1 118 191-313 280-417 (525)
424 2zu0_C Probable ATP-dependent 90.2 0.14 4.9E-06 52.5 3.2 25 191-215 45-69 (267)
425 3b5x_A Lipid A export ATP-bind 90.1 1.3 4.4E-05 51.2 11.5 24 191-214 368-391 (582)
426 3r20_A Cytidylate kinase; stru 90.1 0.16 5.3E-06 50.7 3.2 23 192-214 9-31 (233)
427 2vp4_A Deoxynucleoside kinase; 90.0 0.16 5.6E-06 50.8 3.4 25 190-214 18-42 (230)
428 2qi9_C Vitamin B12 import ATP- 90.0 0.15 5.1E-06 51.7 3.1 24 192-215 26-49 (249)
429 3ake_A Cytidylate kinase; CMP 90.0 0.14 4.9E-06 50.2 2.9 21 194-214 4-24 (208)
430 2zej_A Dardarin, leucine-rich 90.0 0.15 5.1E-06 49.0 2.9 22 194-215 4-25 (184)
431 2ghi_A Transport protein; mult 89.9 0.15 5.2E-06 52.1 3.1 24 192-215 46-69 (260)
432 3exa_A TRNA delta(2)-isopenten 89.9 0.17 5.7E-06 52.5 3.4 24 192-215 3-26 (322)
433 1oix_A RAS-related protein RAB 89.8 0.16 5.6E-06 49.1 3.2 24 192-215 29-52 (191)
434 1zu4_A FTSY; GTPase, signal re 89.8 0.19 6.4E-06 53.1 3.8 25 191-215 104-128 (320)
435 2nq2_C Hypothetical ABC transp 89.8 0.16 5.4E-06 51.7 3.0 24 192-215 31-54 (253)
436 2eyu_A Twitching motility prot 89.7 0.2 6.8E-06 51.2 3.8 24 191-214 24-47 (261)
437 2wji_A Ferrous iron transport 89.7 0.2 6.8E-06 47.1 3.5 23 193-215 4-26 (165)
438 1ny5_A Transcriptional regulat 89.7 0.81 2.8E-05 49.8 8.9 46 166-215 138-183 (387)
439 3crm_A TRNA delta(2)-isopenten 89.7 0.16 5.6E-06 53.1 3.1 22 193-214 6-27 (323)
440 2r6a_A DNAB helicase, replicat 89.7 0.47 1.6E-05 53.0 7.2 51 191-244 202-252 (454)
441 3foz_A TRNA delta(2)-isopenten 89.6 0.2 7E-06 51.8 3.7 24 191-214 9-32 (316)
442 3sr0_A Adenylate kinase; phosp 89.6 0.17 5.7E-06 49.6 2.9 21 194-214 2-22 (206)
443 3nh6_A ATP-binding cassette SU 89.6 0.21 7.2E-06 52.1 3.9 24 191-214 79-102 (306)
444 3be4_A Adenylate kinase; malar 89.5 0.14 4.8E-06 50.8 2.4 22 193-214 6-27 (217)
445 3fvq_A Fe(3+) IONS import ATP- 89.5 0.26 8.8E-06 52.6 4.6 23 192-214 30-52 (359)
446 3e1s_A Exodeoxyribonuclease V, 89.5 0.19 6.5E-06 57.8 3.8 24 192-215 204-227 (574)
447 3k1j_A LON protease, ATP-depen 89.5 0.21 7.2E-06 58.1 4.3 43 165-215 41-83 (604)
448 1e4v_A Adenylate kinase; trans 89.4 0.17 5.7E-06 50.1 2.9 21 194-214 2-22 (214)
449 1q57_A DNA primase/helicase; d 89.4 0.93 3.2E-05 51.4 9.5 54 191-247 241-294 (503)
450 2xb4_A Adenylate kinase; ATP-b 89.4 0.17 5.8E-06 50.5 2.9 21 194-214 2-22 (223)
451 3llm_A ATP-dependent RNA helic 89.3 0.65 2.2E-05 46.5 7.2 21 193-213 77-97 (235)
452 2qmh_A HPR kinase/phosphorylas 89.3 0.21 7.2E-06 47.9 3.3 24 192-215 34-57 (205)
453 1ak2_A Adenylate kinase isoenz 89.2 0.19 6.7E-06 50.4 3.2 23 192-214 16-38 (233)
454 2zts_A Putative uncharacterize 89.2 0.5 1.7E-05 47.7 6.4 50 191-243 29-78 (251)
455 2v9p_A Replication protein E1; 89.0 0.2 7E-06 52.1 3.3 24 191-214 125-148 (305)
456 2f9l_A RAB11B, member RAS onco 89.0 0.21 7.1E-06 48.7 3.2 24 192-215 5-28 (199)
457 2v3c_C SRP54, signal recogniti 88.9 0.25 8.4E-06 54.5 4.0 25 191-215 98-122 (432)
458 1a7j_A Phosphoribulokinase; tr 88.9 0.11 3.9E-06 54.0 1.3 24 191-214 4-27 (290)
459 3zvl_A Bifunctional polynucleo 88.9 0.22 7.4E-06 55.0 3.6 26 190-215 256-281 (416)
460 3tui_C Methionine import ATP-b 88.9 0.31 1E-05 52.1 4.6 24 191-214 53-76 (366)
461 2dyk_A GTP-binding protein; GT 88.9 0.24 8.1E-06 46.0 3.4 23 193-215 2-24 (161)
462 3sop_A Neuronal-specific septi 88.8 0.21 7.2E-06 51.3 3.1 21 194-214 4-24 (270)
463 3end_A Light-independent proto 88.8 0.24 8.2E-06 52.2 3.7 42 189-232 38-79 (307)
464 1tq4_A IIGP1, interferon-induc 88.7 0.29 9.8E-06 53.4 4.3 24 191-214 68-91 (413)
465 1ltq_A Polynucleotide kinase; 88.7 0.22 7.4E-06 52.3 3.3 22 193-214 3-24 (301)
466 1q3t_A Cytidylate kinase; nucl 88.6 0.24 8.4E-06 49.8 3.5 25 190-214 14-38 (236)
467 2iw3_A Elongation factor 3A; a 88.6 1.6 5.3E-05 52.9 10.9 123 192-318 461-610 (986)
468 2lkc_A Translation initiation 88.6 0.32 1.1E-05 46.0 4.2 26 190-215 6-31 (178)
469 2qe7_A ATP synthase subunit al 88.4 0.46 1.6E-05 52.5 5.6 95 176-282 151-263 (502)
470 1z47_A CYSA, putative ABC-tran 88.4 0.35 1.2E-05 51.6 4.6 24 192-215 41-64 (355)
471 2wjg_A FEOB, ferrous iron tran 88.4 0.26 9E-06 47.2 3.4 25 191-215 6-30 (188)
472 2dr3_A UPF0273 protein PH0284; 88.3 0.3 1E-05 49.3 4.0 40 191-232 22-61 (247)
473 1nlf_A Regulatory protein REPA 88.2 0.22 7.6E-06 51.6 2.9 24 191-214 29-52 (279)
474 3rlf_A Maltose/maltodextrin im 88.2 0.36 1.2E-05 51.9 4.6 24 192-215 29-52 (381)
475 2yyz_A Sugar ABC transporter, 88.2 0.36 1.2E-05 51.6 4.6 24 192-215 29-52 (359)
476 3d31_A Sulfate/molybdate ABC t 88.1 0.31 1.1E-05 51.9 4.0 34 192-228 26-59 (348)
477 3qf4_A ABC transporter, ATP-bi 88.1 1.2 4.1E-05 51.5 9.3 24 191-214 368-391 (587)
478 2it1_A 362AA long hypothetical 88.1 0.37 1.3E-05 51.6 4.6 25 191-215 28-52 (362)
479 2bbs_A Cystic fibrosis transme 88.1 0.26 9E-06 51.1 3.4 25 191-215 63-87 (290)
480 2nzj_A GTP-binding protein REM 88.0 0.27 9.2E-06 46.4 3.2 24 192-215 4-27 (175)
481 2ce2_X GTPase HRAS; signaling 88.0 0.24 8E-06 46.2 2.8 22 194-215 5-26 (166)
482 1g29_1 MALK, maltose transport 88.0 0.38 1.3E-05 51.8 4.6 24 192-215 29-52 (372)
483 3kta_A Chromosome segregation 88.0 0.27 9.3E-06 47.0 3.2 22 193-214 27-48 (182)
484 1v43_A Sugar-binding transport 88.0 0.38 1.3E-05 51.7 4.6 24 191-214 36-59 (372)
485 3cmu_A Protein RECA, recombina 87.9 0.81 2.8E-05 59.5 8.3 87 191-284 382-472 (2050)
486 4eaq_A DTMP kinase, thymidylat 87.9 0.3 1E-05 48.8 3.5 25 191-215 25-49 (229)
487 1svm_A Large T antigen; AAA+ f 87.9 0.28 9.4E-06 52.9 3.5 24 191-214 168-191 (377)
488 2yv5_A YJEQ protein; hydrolase 87.8 0.37 1.3E-05 50.4 4.4 32 174-215 156-187 (302)
489 1svi_A GTP-binding protein YSX 87.8 0.35 1.2E-05 46.7 3.9 25 191-215 22-46 (195)
490 2j37_W Signal recognition part 87.6 0.51 1.8E-05 52.9 5.6 25 190-214 99-123 (504)
491 1pgv_A TMD-1, tropomodulin TMD 87.6 1.4 4.8E-05 42.3 7.9 114 556-673 39-167 (197)
492 1fzq_A ADP-ribosylation factor 87.6 0.36 1.2E-05 46.1 3.8 25 191-215 15-39 (181)
493 3vr4_D V-type sodium ATPase su 87.5 0.55 1.9E-05 51.2 5.5 65 176-245 140-207 (465)
494 3q72_A GTP-binding protein RAD 87.4 0.28 9.7E-06 45.8 2.9 22 194-215 4-25 (166)
495 2ocp_A DGK, deoxyguanosine kin 87.4 0.31 1.1E-05 49.2 3.4 24 192-215 2-25 (241)
496 3vkg_A Dynein heavy chain, cyt 87.2 3.1 0.00011 56.7 13.4 82 193-288 1305-1389(3245)
497 3con_A GTPase NRAS; structural 87.2 0.28 9.5E-06 47.2 2.8 23 193-215 22-44 (190)
498 3bgw_A DNAB-like replicative h 87.2 1.2 4.1E-05 49.3 8.2 52 191-246 196-247 (444)
499 3q85_A GTP-binding protein REM 87.2 0.31 1.1E-05 45.6 3.1 21 194-214 4-24 (169)
500 2gj8_A MNME, tRNA modification 87.1 0.37 1.3E-05 45.5 3.6 23 193-215 5-27 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.8e-48 Score=451.92 Aligned_cols=317 Identities=20% Similarity=0.273 Sum_probs=256.4
Q ss_pred ccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc--CcccccccceeEEEEeCCCC--CHHHHHHHH
Q 002154 168 FGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN--NDSVKRNFQKRIWVCVSEPF--DEFRIARAI 243 (959)
Q Consensus 168 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i 243 (959)
|||++++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 34689999999999999999999998 66899999999999999985 899999999
Q ss_pred HHHhCCCCC------cccccHHHHHHHHHHHHhcCc-EEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHH
Q 002154 244 IEALKPGSA------KELVEFQSLMQHIQEYVVEGE-KFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVA 316 (959)
Q Consensus 244 ~~~l~~~~~------~~~~~~~~~~~~l~~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 316 (959)
+.+++.... ....+.+.+...+++. ++++ ||||||||||+.+...|.. .+||+||||||+..++
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNA-LIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH-HTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHH-HcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 999974311 1223456678888888 8886 9999999999753212221 2799999999999999
Q ss_pred Hhhc-ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhh
Q 002154 317 LIMG-STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILES 395 (959)
Q Consensus 317 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~ 395 (959)
..++ ...+|++++|++++||+||.++++... .++.+.+++++|+++|+|+||||+++|+.|+.+ +. +|...+.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHH
Confidence 8775 346899999999999999999987542 246788999999999999999999999999776 32 33334443
Q ss_pred hhhhhhhccccchHHHHhhhcCCChhhHHHHh-----------HhhcccCCceechhHHHHHHHHh--cccccCC-CCcH
Q 002154 396 EIWELEAIEKGLLAPLLLSYKELPSKVKRCFS-----------YCAVFLKDYEIRKHKLIELWMAQ--GYLSEKG-AKEM 461 (959)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~Li~~W~a~--g~i~~~~-~~~~ 461 (959)
..+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+.
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 33322 2456889999999999999999999 999999999999 8999999 9998776 6677
Q ss_pred HHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhcccce
Q 002154 462 EDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCRNECF 511 (959)
Q Consensus 462 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~ 511 (959)
+++++ ||++|+++||+++...+ ...+|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999986543 345899999999999999887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.9e-39 Score=374.45 Aligned_cols=287 Identities=19% Similarity=0.182 Sum_probs=227.2
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~ 244 (959)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45999999999999997532 4789999999999999999999987778899986 89999999999888888887
Q ss_pred HHhCC---C--CCc-----ccccHHHHHHHHHHHH--hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 245 EALKP---G--SAK-----ELVEFQSLMQHIQEYV--VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 245 ~~l~~---~--~~~-----~~~~~~~~~~~l~~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
..+.. . ... ...+.+.+...++..+ ..+||+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 75421 1 000 1123445566666651 3689999999999973 345443 2 68999999999
Q ss_pred hhHHHhhcccceEecC------CCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCC-C
Q 002154 313 ETVALIMGSTQVISVN------ELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKN-T 385 (959)
Q Consensus 313 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~-~ 385 (959)
+.++..+.....+.++ +|+++|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998755544456666 999999999999984 221 1 1222233 9999999999999999885 6
Q ss_pred HHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhh-HHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcHHHH
Q 002154 386 EKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKV-KRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEMEDI 464 (959)
Q Consensus 386 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~e~~ 464 (959)
.++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888653 13468899999999999999 99999999999999999999999999887 245
Q ss_pred HHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHH
Q 002154 465 GEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFA 502 (959)
Q Consensus 465 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~ 502 (959)
++.+|++|+++||++.. +...+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 88999999999999973 1234799999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-37 Score=400.21 Aligned_cols=314 Identities=21% Similarity=0.319 Sum_probs=247.4
Q ss_pred cCCccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEeCCCCC--H
Q 002154 161 SIDESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV-KRNF-QKRIWVCVSEPFD--E 236 (959)
Q Consensus 161 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~--~ 236 (959)
+.+++.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3455679999999999999997543 36899999999999999999999997543 4445 5677999998644 3
Q ss_pred HHHHHHHHHHhCCCC---CcccccHHHHHHHHHHHHhcCc--EEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEecc
Q 002154 237 FRIARAIIEALKPGS---AKELVEFQSLMQHIQEYVVEGE--KFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTR 311 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 311 (959)
...+..++..+.... .....+.+.+...++.. +.++ |+||||||||+.. .|. ...+|++||||||
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~LlvlDd~~~~~--~~~-------~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPW--VLK-------AFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHH-TSSSSCSCEEEEESCCCHH--HHT-------TTCSSCEEEEEES
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHH-HhccCCCEEEEEecCCCHH--HHH-------hhcCCCEEEEEcC
Confidence 445677777776322 22335667788888888 7777 9999999998642 222 2367999999999
Q ss_pred chhHHHh-hcccceEecCC-CChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHH
Q 002154 312 KETVALI-MGSTQVISVNE-LSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEW 389 (959)
Q Consensus 312 ~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w 389 (959)
++.++.. ++....+.+.+ |++++|++||...++.. .+...+++++|+++|+|+||||+++|++|+.++ ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9999854 45567899996 99999999999888432 233445678999999999999999999998875 356
Q ss_pred HHHHhhhhhhh----h----hccccchHHHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcH
Q 002154 390 QNILESEIWEL----E----AIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEM 461 (959)
Q Consensus 390 ~~~l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~ 461 (959)
...++...... . .....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 66655422111 0 1113588999999999999999999999999999999999999999654
Q ss_pred HHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhccc
Q 002154 462 EDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCRNE 509 (959)
Q Consensus 462 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e 509 (959)
++.++.++++|+++||++.... +...+|+|||+||+|++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 4778999999999999997543 34567999999999999998766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=338.40 Aligned_cols=308 Identities=20% Similarity=0.303 Sum_probs=232.4
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEeCCCCCHHHHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV-KRNF-QKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~ 240 (959)
.++.||||+.++++|.++|.... ++.++|+|+||||+||||||+.++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34679999999999999997532 35789999999999999999999998655 7889 57999999875 333344
Q ss_pred HHH---HHHhCCCC---CcccccHHHHHHHHHHHHhcC--cEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 241 RAI---IEALKPGS---AKELVEFQSLMQHIQEYVVEG--EKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 241 ~~i---~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
..+ +..+.... .....+.+.+...+... +.+ +++||||||+|+. ..+ .. ..+|++||||||+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~LLVLDdv~~~-----~~l-~~---l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDS-----WVL-KA---FDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHH-HHHTCTTCEEEEEEECCH-----HHH-HT---TCSSCEEEEEESC
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHH-HccCCCCeEEEEeCCCCH-----HHH-HH---hcCCCeEEEECCC
Confidence 433 44554111 22334566777777776 554 7899999999863 222 22 2568999999999
Q ss_pred hhHHHhhcccceEec---CCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHH
Q 002154 313 ETVALIMGSTQVISV---NELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEW 389 (959)
Q Consensus 313 ~~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w 389 (959)
..++..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+|||++.+|+.++.+. ..|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 98876543 233444 5899999999999987532 112234667999999999999999999998874 357
Q ss_pred HHHHhhhhhhh--------hhccccchHHHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCCcH
Q 002154 390 QNILESEIWEL--------EAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAKEM 461 (959)
Q Consensus 390 ~~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~ 461 (959)
...++...... .....++..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 76665422111 11123688899999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHHccCcccccCCCCCcccEEEEChHHHHHHHHHhc
Q 002154 462 EDIGEEYFNILARRSFFQDFDKGYDGEISTYKMHDIVHDFAQYLCR 507 (959)
Q Consensus 462 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~ 507 (959)
.+.++.++++|+++||++.... +...+|+||++||++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 2457889999999999986432 334579999999999998843
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=9.4e-25 Score=266.97 Aligned_cols=386 Identities=19% Similarity=0.149 Sum_probs=209.0
Q ss_pred CcEEEEEeeeccCC-CCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccc-ccc
Q 002154 531 TKILHLMLTLYKGA-SVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIK-DIP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~-~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp 608 (959)
.+++++.+..+... ..+..+. ..+++|+.|.+.++. +....|..|.++++|++|+|++ +.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~---~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~-------n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALSS-------NNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSC---TTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECCS-------SEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHH---hhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECCC-------CcccCcCC
Confidence 45666666665443 2232222 123777777777765 3334556677777777777777 4443 566
Q ss_pred cc-ccccCCccEEeeccCCCcc-ccchhhccCC-CCcEEecCCCcCCcccchhhhc--cccCCeeecCCccccccCCccC
Q 002154 609 EN-IEKLLHLKYLSLAHQEAIE-RLPEALCELY-NLERLNVSGCSHLRELPRGIGK--LRKLMYLYNAGTDSLRYLPAGI 683 (959)
Q Consensus 609 ~~-i~~l~~L~~L~L~~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~l~~~p~~i 683 (959)
.. ++++++|++|+|++|. +. .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..+
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp HHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred HHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 54 6777777777777776 44 6677777766 7777777776644455655555 6667777777764434566666
Q ss_pred cCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccc
Q 002154 684 DELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAG 763 (959)
Q Consensus 684 ~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 763 (959)
+++++|+.|++..+... +.....+..+++|+.|.+.+..-. ...+..+..+++|+.|+++.+.....
T Consensus 415 ~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~------ 481 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGE------ 481 (768)
T ss_dssp GGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSC------
T ss_pred hcCCCCCEEECcCCccc---CcccHHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCc------
Confidence 77777777666544332 223345566666666666553211 12233455566677777766653211
Q ss_pred cCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCc
Q 002154 764 RRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGM 842 (959)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~ 842 (959)
.+..+..+++|+.|++++|.... ..|.|+..+++|+.|+|++|.....+| .++.+++|+.|+++++
T Consensus 482 -----------~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 482 -----------IPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred -----------CCHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 12234455667777776666553 226666666777777777664444454 4566666777766655
Q ss_pred cCceEeCccccCCCCCC----------------------------------------------------------CCccc
Q 002154 843 KSVKRVGNEFLGVESDT----------------------------------------------------------DGSSV 864 (959)
Q Consensus 843 ~~l~~i~~~~~~~~~~~----------------------------------------------------------~~~~~ 864 (959)
+-...+|..++...... ....+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 42223333221100000 00011
Q ss_pred cCCCccceeeeccccccc-cccc------------------ccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcc
Q 002154 865 IAFPKLRRLRFVCMEELE-EWDC------------------GTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQ 925 (959)
Q Consensus 865 ~~fp~L~~L~l~~~~~L~-~~~~------------------~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~ 925 (959)
..+++|+.|+++++ +++ .++. ....|..++.+++|+.|++++|.-...+|..+..+++|+
T Consensus 629 ~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 629 DNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 22344444444432 111 1110 001222567788888888888755557888888888888
Q ss_pred eEEEccCcc-----------------------h----HHhhccCCCCCCcccCCCCccc
Q 002154 926 GFGIYHCPI-----------------------L----EERYREKTGEDWPKIRHIPRIE 957 (959)
Q Consensus 926 ~L~l~~c~~-----------------------l----~~~~~~~~~~~~~~i~hi~~i~ 957 (959)
+|++++|+. | -..|....+++|++|+|+|.+.
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 888877631 1 0146777888999999999764
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.1e-24 Score=259.96 Aligned_cols=333 Identities=13% Similarity=0.115 Sum_probs=196.1
Q ss_pred hhHHhccCCcccEEEccccCcccccccccc------------------cccccc--ccCCccEEeeccCCCccccchhhc
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKD------------------IPENIE--KLLHLKYLSLAHQEAIERLPEALC 636 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~i~~lp~~i~ 636 (959)
+|..|.++++|++|+|++ +.+.. +|..++ ++++|++|+|++|.....+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~-------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFAN-------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEES-------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECcC-------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 566688889999999998 44555 888887 899999999998876678888899
Q ss_pred cCCCCcEEecCCCcCCc--ccchhhhccc-------cCCeeecCCccccccCCc--cCcCCCCCCccCceeecCccCCCC
Q 002154 637 ELYNLERLNVSGCSHLR--ELPRGIGKLR-------KLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKFVVGGGYDRAC 705 (959)
Q Consensus 637 ~L~~L~~L~l~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~ 705 (959)
+|++|++|+|++|..+. .+|..++++. +|++|++++| .+..+|. .++++++|+.|++..+...
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~----- 586 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR----- 586 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-----
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-----
Confidence 99999999999886354 5888877776 8999999888 5568888 7888888888877655433
Q ss_pred CccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCC-CCceEEeecCCCCCCccccccC-------CCchhhHHHHhh
Q 002154 706 SLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKN-LFDLDLHFGHSRDGDEEQAGRR-------ENEEDKDERLLE 777 (959)
Q Consensus 706 ~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 777 (959)
.+..+..+++|+.|.+.+..-. ..+..+..+++ |+.|+++.+.....+....... ..........++
T Consensus 587 ~lp~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 587 HLEAFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp BCCCCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cchhhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 1225666777777777653211 22334556666 7777777665432221100000 000000000001
Q ss_pred ----hCC--CCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCC---------CCCcCCCcceeecCc
Q 002154 778 ----ALG--PPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPP---------LGKLPSLEDLWIQGM 842 (959)
Q Consensus 778 ----~l~--~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~---------l~~l~~L~~L~l~~~ 842 (959)
.+. ..++|+.|++++|.... +++.++..+++|+.|+|++| .+..+|. +.++++|+.|+|++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC
Confidence 111 23467777777777665 62333346777777777777 3335542 123347777777765
Q ss_pred cCceEeCcccc--CCCCC----------CC-CccccCCCccceeeecccccccccccccccccccccCcccceeeeecCC
Q 002154 843 KSVKRVGNEFL--GVESD----------TD-GSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCP 909 (959)
Q Consensus 843 ~~l~~i~~~~~--~~~~~----------~~-~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~ 909 (959)
. +..++..+. ..... .. ...+..+++|+.|+|++++.+..-......+..+..+++|+.|++++|
T Consensus 739 ~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N- 816 (876)
T 4ecn_A 739 K-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN- 816 (876)
T ss_dssp C-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred C-CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-
Confidence 3 555554432 00000 00 001224455555555542211110000111223556777777777776
Q ss_pred CCcCCCcCCCCCCCcceEEEccCcc
Q 002154 910 KLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 910 ~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
.+..+|..+. ++|+.|+|++|+.
T Consensus 817 ~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 817 DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCccCHhhc--CCCCEEECCCCCC
Confidence 3467776653 5777777777763
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.2e-24 Score=255.02 Aligned_cols=333 Identities=12% Similarity=0.097 Sum_probs=196.6
Q ss_pred hhHHhccCCcccEEEccccCcccccccccc------------------cccccc--ccCCccEEeeccCCCccccchhhc
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKD------------------IPENIE--KLLHLKYLSLAHQEAIERLPEALC 636 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~i~~lp~~i~ 636 (959)
+|..+.++++|++|+|++ +.+.. +|..++ ++++|++|+|++|.....+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~-------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGN-------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEES-------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECcC-------CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 566788999999999998 55665 899998 999999999999986678899999
Q ss_pred cCCCCcEEecCCCcCCc--ccchhhhcc------ccCCeeecCCccccccCCc--cCcCCCCCCccCceeecCccCCCCC
Q 002154 637 ELYNLERLNVSGCSHLR--ELPRGIGKL------RKLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKFVVGGGYDRACS 706 (959)
Q Consensus 637 ~L~~L~~L~l~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~ 706 (959)
++++|++|++++|..+. .+|..+++| ++|++|++++| .+..+|. .++++++|++|++..+.... ..
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g---~i 346 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEG---KL 346 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEE---EC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCcc---ch
Confidence 99999999999986454 589888887 89999999988 5668888 78999999998876654431 11
Q ss_pred ccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCC-CCceEEeecCCCCCCccccccC-------CCch-hhHHHHhh
Q 002154 707 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKN-LFDLDLHFGHSRDGDEEQAGRR-------ENEE-DKDERLLE 777 (959)
Q Consensus 707 ~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------~~~~-~~~~~~l~ 777 (959)
. .+..+++|+.|.+.+.. .. ..+..+..+++ |+.|+++.+.....+....... .... ......+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQ----IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp C-CCEEEEEESEEECCSSE----EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred h-hhCCCCCCCEEECCCCc----cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 1 45555556666555421 11 22233445555 6666666555332111100000 0000 00001112
Q ss_pred hCC-------CCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCC--C-------CCcCCCcceeecC
Q 002154 778 ALG-------PPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPP--L-------GKLPSLEDLWIQG 841 (959)
Q Consensus 778 ~l~-------~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l-------~~l~~L~~L~l~~ 841 (959)
.+. ..++|+.|++++|.... +++.++..+++|+.|+|++|. +..+|. + ..+++|+.|++++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcC
Confidence 232 34567777777776665 533334456777777777663 334442 1 1223666666665
Q ss_pred ccCceEeCcccc--CCCCC----------C-CCccccCCCccceeeecccccccccccccccccccccCcccceeeeecC
Q 002154 842 MKSVKRVGNEFL--GVESD----------T-DGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYC 908 (959)
Q Consensus 842 ~~~l~~i~~~~~--~~~~~----------~-~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C 908 (959)
+. +..++..+. ..... . ....+..+++|+.|+++++..+..-......+..+..+++|+.|++++|
T Consensus 498 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 498 NK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp SC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred Cc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 43 444544332 10000 0 0011224556666666432211110000111124556777777777776
Q ss_pred CCCcCCCcCCCCCCCcceEEEccCc
Q 002154 909 PKLKALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 909 ~~L~~lp~~l~~l~~L~~L~l~~c~ 933 (959)
.++.+|..+. ++|+.|++++|+
T Consensus 577 -~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 577 -DIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp -CCCBCCSCCC--TTCCEEECCSCT
T ss_pred -cCCccCHhHh--CcCCEEECcCCC
Confidence 4477776654 678888888775
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1e-23 Score=251.64 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=86.5
Q ss_pred CCCceEEEeeeCCCCCCCCcChhh--cccccceeeecCccCCCcCC-CCCCcCCCcceeecCcc------CceEeCcccc
Q 002154 783 PNLKKLVIDEYRGRRNVVPINWIM--SLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMK------SVKRVGNEFL 853 (959)
Q Consensus 783 ~~L~~L~l~~~~~~~~~~~p~~~~--~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~------~l~~i~~~~~ 853 (959)
++|+.|++++|.... + |..+. .+++|+.|+|++|. +..+| .++.+++|+.|+|+++. -...++..
T Consensus 488 ~~L~~L~Ls~N~l~~--l-p~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-- 561 (636)
T 4eco_A 488 YLLTSIDLRFNKLTK--L-SDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-- 561 (636)
T ss_dssp GGCCEEECCSSCCCB--C-CGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT--
T ss_pred CCccEEECcCCcCCc--c-ChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHH--
Confidence 378888888888776 6 66665 78888888888884 33465 46778888888885432 12222222
Q ss_pred CCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCC---------cCCCCCCCc
Q 002154 854 GVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP---------DHLLQKSTL 924 (959)
Q Consensus 854 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp---------~~l~~l~~L 924 (959)
+..+++|+.|+++++ .++.++. . .+++|+.|++++|+.. .++ .....+...
T Consensus 562 ----------l~~l~~L~~L~Ls~N-~l~~ip~------~--~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~ 621 (636)
T 4eco_A 562 ----------ITLCPSLTQLQIGSN-DIRKVNE------K--ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYD 621 (636)
T ss_dssp ----------GGGCSSCCEEECCSS-CCCBCCS------C--CCTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECC
T ss_pred ----------HhcCCCCCEEECCCC-cCCccCH------h--HhCcCCEEECcCCCCc-cccHHhcchhhhcccceeecC
Confidence 337899999999995 5677764 2 2389999999998633 221 122233445
Q ss_pred ceEEEccCcchH
Q 002154 925 QGFGIYHCPILE 936 (959)
Q Consensus 925 ~~L~l~~c~~l~ 936 (959)
+..++.+||.|.
T Consensus 622 ~~~~i~~C~~L~ 633 (636)
T 4eco_A 622 KTQDIRGCDALD 633 (636)
T ss_dssp TTSEEESCGGGC
T ss_pred CccccCCCcccc
Confidence 667889999764
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.7e-23 Score=253.44 Aligned_cols=324 Identities=13% Similarity=0.109 Sum_probs=182.6
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccc-cc--cccccccccC-------CccEEeeccC
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNF-IK--DIPENIEKLL-------HLKYLSLAHQ 625 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~-~~--~lp~~i~~l~-------~L~~L~L~~~ 625 (959)
.+++|+.|.+.++. +...+|..|.++++|++|+|++ +. +. .+|..++++. +|++|+|++|
T Consensus 489 ~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls~-------N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 489 NLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIAC-------NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECTT-------CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECcC-------CCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 56677777776664 2333555566667777777766 32 33 3555555554 6666666666
Q ss_pred CCccccch--hhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCC-CCccCceeecCccC
Q 002154 626 EAIERLPE--ALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIR-LRSVRKFVVGGGYD 702 (959)
Q Consensus 626 ~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~ 702 (959)
. +..+|. .++++++|++|++++|. +..+| .+..+++|++|++++| .+..+|..+.++++ |+.|++..+....
T Consensus 559 ~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~- 633 (876)
T 4ecn_A 559 N-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY- 633 (876)
T ss_dssp C-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCS-
T ss_pred c-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCc-
Confidence 6 556666 66666666666666665 55666 6666666666666666 34466666666666 6666554443221
Q ss_pred CCCCccccccC-------------------------------CCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEee
Q 002154 703 RACSLGSLKKL-------------------------------NLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHF 751 (959)
Q Consensus 703 ~~~~~~~L~~L-------------------------------~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 751 (959)
....+..+ ++|+.|.+.+..- . ......+..+++|+.|+|+.
T Consensus 634 ---lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~---~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 634 ---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q---KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp ---CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C---SCCHHHHHTTCCCSEEECCS
T ss_pred ---CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-C---ccCHHHHccCCCCCEEECCC
Confidence 01111111 1333333333211 0 01111122445666666665
Q ss_pred cCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhh--cccccceeeecCccCCCcCC-CC
Q 002154 752 GHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIM--SLTNLRDLSLNWWRNCEHLP-PL 828 (959)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~--~l~~L~~L~L~~~~~~~~l~-~l 828 (959)
+.+...+... .......+..+++|+.|+|++|.... + |..+. .+++|+.|+|++|. +..+| .+
T Consensus 707 N~L~~ip~~~----------~~~~~~~l~nl~~L~~L~Ls~N~L~~--l-p~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l 772 (876)
T 4ecn_A 707 NLMTSIPENS----------LKPKDGNYKNTYLLTTIDLRFNKLTS--L-SDDFRATTLPYLSNMDVSYNC-FSSFPTQP 772 (876)
T ss_dssp CCCSCCCTTS----------SSCTTSCCTTGGGCCEEECCSSCCCC--C-CGGGSTTTCTTCCEEECCSSC-CSSCCCGG
T ss_pred CcCCccChHH----------hccccccccccCCccEEECCCCCCcc--c-hHHhhhccCCCcCEEEeCCCC-CCccchhh
Confidence 5432111000 00000001123378888888887775 6 66665 78888888888884 44465 46
Q ss_pred CCcCCCcceeecCcc------CceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccce
Q 002154 829 GKLPSLEDLWIQGMK------SVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSS 902 (959)
Q Consensus 829 ~~l~~L~~L~l~~~~------~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~ 902 (959)
+.+++|+.|+|+++. -...++. .+..+++|+.|+|+++ .+..++. . .+++|+.
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~------------~l~~L~~L~~L~Ls~N-~L~~Ip~------~--l~~~L~~ 831 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPT------------GITTCPSLIQLQIGSN-DIRKVDE------K--LTPQLYI 831 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCT------------TGGGCSSCCEEECCSS-CCCBCCS------C--CCSSSCE
T ss_pred hcCCCCCEEECCCCCCcccccccccChH------------HHhcCCCCCEEECCCC-CCCccCH------h--hcCCCCE
Confidence 788888888887633 1122222 2347899999999995 5677765 2 3479999
Q ss_pred eeeecCCCCcCCCc--------CCCCCCCcceEEEccCcchH
Q 002154 903 LSIVYCPKLKALPD--------HLLQKSTLQGFGIYHCPILE 936 (959)
Q Consensus 903 L~i~~C~~L~~lp~--------~l~~l~~L~~L~l~~c~~l~ 936 (959)
|+|++|+...--+. ....+..-+..+|.+||.+.
T Consensus 832 LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 832 LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp EECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred EECCCCCCCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 99999864332111 12223333445778898763
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.9e-23 Score=227.67 Aligned_cols=303 Identities=17% Similarity=0.187 Sum_probs=205.5
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+++|++|.+.++... . ++. +..+++|++|++++ +.+..+|. +..+++|++|++++|. ++.+| .+
T Consensus 42 ~l~~L~~L~l~~~~i~---~-~~~-~~~~~~L~~L~l~~-------n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA---S-IQG-IEYLTNLEYLNLNG-------NQITDISP-LSNLVKLTNLYIGTNK-ITDIS-AL 106 (347)
T ss_dssp HHTTCSEEECCSSCCC---C-CTT-GGGCTTCCEEECCS-------SCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred hcccccEEEEeCCccc---c-chh-hhhcCCccEEEccC-------Cccccchh-hhcCCcCCEEEccCCc-ccCch-HH
Confidence 4566777777766532 2 222 56677777777776 45555655 6677777777777776 66665 36
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
.++++|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|.+..+.... +..+..+++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~ 178 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-----VTPIANLTD 178 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-----CGGGGGCTT
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-----chhhccCCC
Confidence 777777777777765 666655 6677777777777764444333 36666666666655433221 222566677
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCC
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRG 795 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 795 (959)
|+.|++.+..- .... .+..+++|+.|+++.+..... ..+..+++|+.|++++|..
T Consensus 179 L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 179 LYSLSLNYNQI-EDIS-----PLASLTSLHYFTAYVNQITDI-------------------TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CSEEECTTSCC-CCCG-----GGGGCTTCCEEECCSSCCCCC-------------------GGGGGCTTCCEEECCSSCC
T ss_pred CCEEEccCCcc-cccc-----cccCCCccceeecccCCCCCC-------------------chhhcCCcCCEEEccCCcc
Confidence 77777765432 1111 155677888888887652211 1145678999999999988
Q ss_pred CCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeee
Q 002154 796 RRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRF 875 (959)
Q Consensus 796 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 875 (959)
.. + +. +..+++|+.|++++| .+..++.+..+++|+.|++++|. +..++. ...+++|+.|++
T Consensus 234 ~~--~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 TD--L-SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNSLFL 294 (347)
T ss_dssp CC--C-GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEEC
T ss_pred CC--C-cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCEEEC
Confidence 77 5 43 778999999999998 56667788899999999999874 554421 237899999999
Q ss_pred cccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCc
Q 002154 876 VCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 876 ~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~ 933 (959)
+++ .+...... .+..+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 295 ~~n-~l~~~~~~-----~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNN-QLGNEDME-----VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSS-CCCGGGHH-----HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCC-cCCCcChh-----HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 996 44443321 35678999999999985 666766 7779999999999986
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.8e-23 Score=252.78 Aligned_cols=295 Identities=19% Similarity=0.139 Sum_probs=226.8
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhcc-CCcccEEEccccCccccccccc-ccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDK-LTCLRALKLEVRQPWWCQNFIK-DIP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~-~lp 608 (959)
.+++.+.+..+........ . .+++|++|.+.++. +.+.+|..+.. +++|++|+|++ +.+. .+|
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~-~----~l~~L~~L~L~~n~---l~~~ip~~~~~~~~~L~~L~Ls~-------n~l~~~~p 311 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPP-L----PLKSLQYLSLAENK---FTGEIPDFLSGACDTLTGLDLSG-------NHFYGAVP 311 (768)
T ss_dssp SSCCEEECCSSCCEESCCC-C----CCTTCCEEECCSSE---EEESCCCCSCTTCTTCSEEECCS-------SEEEECCC
T ss_pred CCCCEEECCCCcccCccCc-c----ccCCCCEEECcCCc---cCCccCHHHHhhcCcCCEEECcC-------CcCCCccc
Confidence 5678888877765421111 1 68999999999987 33335555555 59999999999 4454 678
Q ss_pred ccccccCCccEEeeccCCCcc-ccchh-hccCCCCcEEecCCCcCCcccchhhhccc-cCCeeecCCccccccCCccCcC
Q 002154 609 ENIEKLLHLKYLSLAHQEAIE-RLPEA-LCELYNLERLNVSGCSHLRELPRGIGKLR-KLMYLYNAGTDSLRYLPAGIDE 685 (959)
Q Consensus 609 ~~i~~l~~L~~L~L~~~~~i~-~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~ 685 (959)
..++++++|++|+|++|. +. .+|.. ++++++|++|++++|.....+|..+.++. +|++|++++|.....+|..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999998 65 88876 89999999999999984458999999998 9999999999655567777766
Q ss_pred --CCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccc
Q 002154 686 --LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAG 763 (959)
Q Consensus 686 --L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 763 (959)
+++|+.|++..+... +.....+.++++|+.|++.+.. .....+..+..+++|+.|+++.+.....
T Consensus 391 ~~~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~------ 457 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFT---GKIPPTLSNCSELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGE------ 457 (768)
T ss_dssp STTCCCCEEECCSSEEE---EECCGGGGGCTTCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSC------
T ss_pred cccCCccEEECCCCccc---cccCHHHhcCCCCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCc------
Confidence 788998887665443 2345567888899998887642 1223345577889999999998863222
Q ss_pred cCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCc
Q 002154 764 RRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGM 842 (959)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~ 842 (959)
++..+..+++|+.|++++|.... ..|.++..+++|+.|+|++|.....+| .++.+++|+.|++++|
T Consensus 458 -----------~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 458 -----------IPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred -----------CCHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 23456667899999999998875 338899999999999999997665676 5889999999999998
Q ss_pred cCceEeCccccCCCCCCCCccccCCCccceeeecccc
Q 002154 843 KSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCME 879 (959)
Q Consensus 843 ~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 879 (959)
.-...++..+. .+++|+.|++++++
T Consensus 525 ~l~~~~p~~l~------------~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 525 SFSGNIPAELG------------DCRSLIWLDLNTNL 549 (768)
T ss_dssp CCEEECCGGGG------------GCTTCCEEECCSSE
T ss_pred cccCcCCHHHc------------CCCCCCEEECCCCc
Confidence 74445555433 67888998888753
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.4e-22 Score=225.78 Aligned_cols=304 Identities=17% Similarity=0.165 Sum_probs=234.8
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccch-
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPE- 633 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~- 633 (959)
.+++++.|.+.++. +..+++..|..+++|++|+|++ +.+..+| ..++++++|++|+|++|. +..+|.
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLND-------LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECCC-------CcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 46889999999876 4555566688999999999998 5666665 478999999999999998 877754
Q ss_pred hhccCCCCcEEecCCCcCCcccchhh-hccccCCeeecCCccccccCC-ccCcCCCCCCccCceeecCccCCCCCccccc
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRGI-GKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVVGGGYDRACSLGSLK 711 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~ 711 (959)
.++++++|++|++++|. +..+|..+ .++++|++|++++| .+..++ ..++.+++|++|++..+.... . .+.
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~---~~~ 183 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLS 183 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB---C---CGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc---c---ccc
Confidence 58999999999999987 88898774 88999999999998 455554 458889999999876654432 1 355
Q ss_pred cCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEe
Q 002154 712 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVID 791 (959)
Q Consensus 712 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 791 (959)
.+++|+.+.+.+..- ..+....+|+.|+++.+..... ....+++|+.|+++
T Consensus 184 ~l~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~~--------------------~~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 184 LIPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVV--------------------RGPVNVELTILKLQ 234 (390)
T ss_dssp GCTTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCCEE--------------------ECCCCSSCCEEECC
T ss_pred cccccceeecccccc---------cccCCCCcceEEECCCCeeeec--------------------cccccccccEEECC
Confidence 667777777765321 1233456899999988762111 11234789999999
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCcc
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKL 870 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 870 (959)
+|.... +.++..+++|+.|++++|......| .++.+++|+.|+++++. +..++... ..+|+|
T Consensus 235 ~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L 297 (390)
T 3o6n_A 235 HNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTL 297 (390)
T ss_dssp SSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTC
T ss_pred CCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCC
Confidence 998876 5688999999999999995433333 57889999999999864 66665432 268999
Q ss_pred ceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 871 RRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 871 ~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+.|+++++ .+..++. ....+++|+.|++++| .+..+| +..+++|++|+++++|-
T Consensus 298 ~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVER------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CEEECCSS-CCCCCGG------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CEEECCCC-cceecCc------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 99999995 6776654 4667999999999997 577776 66789999999999874
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.6e-22 Score=241.62 Aligned_cols=367 Identities=14% Similarity=0.095 Sum_probs=229.0
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~ 609 (959)
..++++.+..+.....+. ..+.++++|++|+++++. +..+.|..|.++++|++|+|++ +.+..+ |.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~-------n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTG-------NPIQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTT-------CCCCCCCTT
T ss_pred CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCC-------CcccccChh
Confidence 778899888887764433 134588999999999886 4455677788999999999998 556666 78
Q ss_pred cccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCc--ccchhhhccccCCeeecCCccccccC-CccCcC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLR--ELPRGIGKLRKLMYLYNAGTDSLRYL-PAGIDE 685 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~ 685 (959)
.++++++|++|+|++|. +..+| ..++++++|++|++++|. +. .+|..+.++++|++|++++| .+..+ |..++.
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 175 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQF 175 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHH
T ss_pred hcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCC-cceecChhhhhh
Confidence 89999999999999998 77776 578999999999999987 54 57888999999999999988 44444 445666
Q ss_pred CCCCC----ccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccc
Q 002154 686 LIRLR----SVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQ 761 (959)
Q Consensus 686 L~~L~----~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 761 (959)
+++|+ +|++..+.... .....+ ...+|+.|++.+... ........+.++++|+.+.+............
T Consensus 176 l~~L~~~l~~L~l~~n~l~~---~~~~~~-~~~~L~~L~L~~n~~---~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDF---IQDQAF-QGIKLHELTLRGNFN---SSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCE---ECTTTT-TTCEEEEEEEESCCS---CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhccccccceeeccCCCcce---eCcccc-cCceeeeeeccCCcc---chhHHHHHhccccccccccccccccccCCccc
Confidence 66665 34333322221 111112 222577777776421 12445566777788888777654321110000
Q ss_pred ------cccCCC---------chhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC
Q 002154 762 ------AGRREN---------EEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP 826 (959)
Q Consensus 762 ------~~~~~~---------~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 826 (959)
...... ...........+..+++|+.|.+.++.... + | ++..+++|+.|++++|.. +.+|
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l-~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--L-E-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC--C-C-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh--h-h-hccccccCCEEEcccccC-cccc
Confidence 000000 000001112225567788888888888766 5 5 777888888888888854 7777
Q ss_pred CCCCcCCCcceeecCccCceEeCccccC--------CCCCC----CCccccCCCccceeeeccccccccccccccccccc
Q 002154 827 PLGKLPSLEDLWIQGMKSVKRVGNEFLG--------VESDT----DGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEI 894 (959)
Q Consensus 827 ~l~~l~~L~~L~l~~~~~l~~i~~~~~~--------~~~~~----~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~ 894 (959)
.+ .+++|+.|++.++..+..++..... .+... .......+++|+.|+++++ .+..++. .+
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~------~~ 395 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSA------NF 395 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECC------CC
T ss_pred cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchh------hc
Confidence 77 8888888888877544433110000 00000 0001124455555555553 2333332 35
Q ss_pred ccCcccceeeeecCCCCcCCC-cCCCCCCCcceEEEccCc
Q 002154 895 IIMARLSSLSIVYCPKLKALP-DHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 895 ~~~~~L~~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c~ 933 (959)
..+++|+.|++++|......| ..+..+++|++|++++|.
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 567777777777764333333 356677788888887775
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.3e-22 Score=240.26 Aligned_cols=354 Identities=18% Similarity=0.154 Sum_probs=231.9
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-c
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-E 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~ 609 (959)
.+++++.+..+.+..++. ..+..+++|++|.++++. +....|..|.++++|++|+|++ +.+..+| .
T Consensus 56 ~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~-------n~l~~~~~~ 122 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIED---KAWHGLHHLSNLILTGNP---IQSFSPGSFSGLTSLENLVAVE-------TKLASLESF 122 (606)
T ss_dssp TTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCC---CCCCCTTSSTTCTTCCEEECTT-------SCCCCSSSS
T ss_pred ccCcEEeCCCCcccccCH---HHhhchhhcCEeECCCCc---ccccChhhcCCcccCCEEEccC-------Ccccccccc
Confidence 678899998877664322 234589999999999987 4555677799999999999999 6676665 6
Q ss_pred cccccCCccEEeeccCCCcc--ccchhhccCCCCcEEecCCCcCCccc-chhhhccccCC----eeecCCccccccCCcc
Q 002154 610 NIEKLLHLKYLSLAHQEAIE--RLPEALCELYNLERLNVSGCSHLREL-PRGIGKLRKLM----YLYNAGTDSLRYLPAG 682 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~----~L~l~~~~~l~~~p~~ 682 (959)
.++++.+|++|++++|. +. .+|..++++++|++|++++|. +..+ |..+..+.+|+ +|++++| .+..+|..
T Consensus 123 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~ 199 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQ 199 (606)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTT
T ss_pred ccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCC-CcceeCcc
Confidence 79999999999999998 76 589999999999999999987 6555 55677777765 7999998 67778877
Q ss_pred CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEe--CCC---------------------------CCCChhhh
Q 002154 683 IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSID--GLG---------------------------GVSDAGEA 733 (959)
Q Consensus 683 i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~--~~~---------------------------~~~~~~~~ 733 (959)
.....+|+.|++..+.... ......+.+++.|+.+.+. ... ........
T Consensus 200 ~~~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 277 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSS--NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277 (606)
T ss_dssp TTTTCEEEEEEEESCCSCH--HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGG
T ss_pred cccCceeeeeeccCCccch--hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccc
Confidence 6666688888766543221 0111122333333322111 000 00111111
Q ss_pred HhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccce
Q 002154 734 RRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRD 813 (959)
Q Consensus 734 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~ 813 (959)
... +..+++|+.|+++.+.... ++.+..+++|+.|++.+|.... + |.+ .+++|+.
T Consensus 278 ~~~-~~~l~~L~~L~l~~~~~~~-------------------l~~l~~~~~L~~L~l~~n~l~~--l-p~~--~l~~L~~ 332 (606)
T 3vq2_A 278 IVK-FHCLANVSAMSLAGVSIKY-------------------LEDVPKHFKWQSLSIIRCQLKQ--F-PTL--DLPFLKS 332 (606)
T ss_dssp GGS-CGGGTTCSEEEEESCCCCC-------------------CCCCCTTCCCSEEEEESCCCSS--C-CCC--CCSSCCE
T ss_pred ccc-cccCCCCCEEEecCccchh-------------------hhhccccccCCEEEcccccCcc--c-ccC--CCCccce
Confidence 222 5566777777777665211 1145556677777777777644 5 544 6777777
Q ss_pred eeecCccCCCcCCCCCCcCCCcceeecCccCceEe---CccccCCCCCC-----------CCccccCCCccceeeecccc
Q 002154 814 LSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRV---GNEFLGVESDT-----------DGSSVIAFPKLRRLRFVCME 879 (959)
Q Consensus 814 L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i---~~~~~~~~~~~-----------~~~~~~~fp~L~~L~l~~~~ 879 (959)
|++++|.....+ .++.+++|++|+++++. +..+ +..+....... ....+..+++|+.|+++++
T Consensus 333 L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n- 409 (606)
T 3vq2_A 333 LTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS- 409 (606)
T ss_dssp EEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS-
T ss_pred eeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC-
Confidence 777776444333 45566666666665543 3322 11110000000 0012347899999999985
Q ss_pred cccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 880 ELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 880 ~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
.+...... ..+..+++|+.|++++|......|..+..+++|++|++++|..
T Consensus 410 ~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 410 TLKRVTEF----SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp EEESTTTT----TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ccCCccCh----hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 44443220 1356799999999999876666788889999999999999864
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.4e-22 Score=237.22 Aligned_cols=304 Identities=17% Similarity=0.160 Sum_probs=235.7
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccch-
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPE- 633 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~- 633 (959)
.+++++.|.+.++. +..+++..|.++++|++|+|++ +.+..+| ..++++++|++|+|++|. +..+|.
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLND-------LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCC-------CCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 46789999998876 4555667789999999999999 5566665 489999999999999998 887776
Q ss_pred hhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCc-cCcCCCCCCccCceeecCccCCCCCccccc
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPA-GIDELIRLRSVRKFVVGGGYDRACSLGSLK 711 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~ 711 (959)
.++++++|++|+|++|. +..+|.. +.++++|++|++++| .+..+++ .++.+++|++|++..+.... . .+.
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~ 189 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLS 189 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chh
Confidence 56899999999999987 8888877 489999999999998 4555554 58899999999876654432 1 255
Q ss_pred cCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEe
Q 002154 712 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVID 791 (959)
Q Consensus 712 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 791 (959)
.+++|+.|.+.+..- ..+....+|+.|+++.+..... . ...+++|+.|+++
T Consensus 190 ~l~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~------------------~--~~~~~~L~~L~L~ 240 (597)
T 3oja_B 190 LIPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVV------------------R--GPVNVELTILKLQ 240 (597)
T ss_dssp GCTTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCCEE------------------E--CSCCSCCCEEECC
T ss_pred hhhhhhhhhcccCcc---------ccccCCchhheeeccCCccccc------------------c--cccCCCCCEEECC
Confidence 667777777765311 1234456899999988762111 1 1123689999999
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCcc
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKL 870 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 870 (959)
+|.... +.++..+++|+.|+|++|......| .++.+++|+.|+|+++. +..++... ..+|+|
T Consensus 241 ~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L 303 (597)
T 3oja_B 241 HNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTL 303 (597)
T ss_dssp SSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTC
T ss_pred CCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCC
Confidence 998876 7788999999999999995444434 58899999999999864 66665432 268999
Q ss_pred ceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 871 RRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 871 ~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+.|+++++ .+..++. .+..+++|+.|++++| .+..+| +..+++|+.|++++||-
T Consensus 304 ~~L~Ls~N-~l~~i~~------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 304 KVLDLSHN-HLLHVER------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CEEECCSS-CCCCCGG------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred cEEECCCC-CCCccCc------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 99999995 6666654 4678999999999997 567676 56789999999999874
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.7e-22 Score=227.56 Aligned_cols=320 Identities=22% Similarity=0.267 Sum_probs=172.8
Q ss_pred cEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccc
Q 002154 532 KILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENI 611 (959)
Q Consensus 532 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 611 (959)
.++.+.+..+....++. +..+++|++|+++++. +....+ +.++++|++|++++ +.+..++. +
T Consensus 47 ~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n~---l~~~~~--~~~l~~L~~L~l~~-------n~l~~~~~-~ 108 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQ---LTDITP--LKNLTKLVDILMNN-------NQIADITP-L 108 (466)
T ss_dssp TCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSSC---CCCCGG--GTTCTTCCEEECCS-------SCCCCCGG-G
T ss_pred cccEEecCCCCCccCcc-----hhhhcCCCEEECCCCc---cCCchh--hhccccCCEEECCC-------CccccChh-h
Confidence 45555555544433221 2255666666666654 222222 55666666666665 44444444 5
Q ss_pred cccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeec---------------------
Q 002154 612 EKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYN--------------------- 670 (959)
Q Consensus 612 ~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l--------------------- 670 (959)
+++++|++|++++|. +..+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 666666666666665 555554 5666666666666554 44443 2445555555554
Q ss_pred CCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEe
Q 002154 671 AGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLH 750 (959)
Q Consensus 671 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (959)
++| .+..++ .+.++++|+.|.+..+.... +..+..+++|+.|.+.+..- ... ..+..+++|+.|+++
T Consensus 185 ~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 185 SSN-KVSDIS-VLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQL-KDI-----GTLASLTNLTDLDLA 251 (466)
T ss_dssp CSS-CCCCCG-GGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECC
T ss_pred cCC-cCCCCh-hhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCc-ccc-----hhhhcCCCCCEEECC
Confidence 444 222222 23344444444333222111 11133344444444443211 110 123344555555555
Q ss_pred ecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCC
Q 002154 751 FGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGK 830 (959)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 830 (959)
.+.... ...+..+++|+.|++++|.... + +. +..+++|+.|++++| .++.+++++.
T Consensus 252 ~n~l~~-------------------~~~~~~l~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n-~l~~~~~~~~ 307 (466)
T 1o6v_A 252 NNQISN-------------------LAPLSGLTKLTELKLGANQISN--I-SP-LAGLTALTNLELNEN-QLEDISPISN 307 (466)
T ss_dssp SSCCCC-------------------CGGGTTCTTCSEEECCSSCCCC--C-GG-GTTCTTCSEEECCSS-CCSCCGGGGG
T ss_pred CCcccc-------------------chhhhcCCCCCEEECCCCccCc--c-cc-ccCCCccCeEEcCCC-cccCchhhcC
Confidence 443110 0114455667777777766655 4 22 556777777777776 4455555667
Q ss_pred cCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCC
Q 002154 831 LPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPK 910 (959)
Q Consensus 831 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~ 910 (959)
+++|+.|++++|. +..++. ...+++|+.|+++++ .++.++ ....+++|+.|++++|+
T Consensus 308 l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n~- 364 (466)
T 1o6v_A 308 LKNLTYLTLYFNN-ISDISP-------------VSSLTKLQRLFFYNN-KVSDVS-------SLANLTNINWLSAGHNQ- 364 (466)
T ss_dssp CTTCSEEECCSSC-CSCCGG-------------GGGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSSC-
T ss_pred CCCCCEEECcCCc-CCCchh-------------hccCccCCEeECCCC-ccCCch-------hhccCCCCCEEeCCCCc-
Confidence 7777777777654 332221 226788888888875 555553 36678889999998874
Q ss_pred CcCCCcCCCCCCCcceEEEccCcc
Q 002154 911 LKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 911 L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+..+++ +..+++|+.|++++|+-
T Consensus 365 l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 365 ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred cCccch-hhcCCCCCEEeccCCcc
Confidence 555554 67788999999988853
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=231.71 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=92.9
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++++.+..+.+...+. ..+..+++|++|.++++. +....|..|.++++|++|+|++ +.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~-------N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLSH-------NKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCS-------SCCCEEECC
T ss_pred ccccEEECCCCcccccCh---hhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecCC-------CceeecCcc
Confidence 678888888877664432 223478888888888886 4455566788888888888888 667777776
Q ss_pred ccccCCccEEeeccCCCccc--cchhhccCCCCcEEecCCCcCCcccchhhhccccC--CeeecCCcc
Q 002154 611 IEKLLHLKYLSLAHQEAIER--LPEALCELYNLERLNVSGCSHLRELPRGIGKLRKL--MYLYNAGTD 674 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~ 674 (959)
.+++|++|+|++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.
T Consensus 88 --~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp --CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECT
T ss_pred --ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccc
Confidence 78888888888888 664 56788888888888888876 543 356667777 888887764
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.3e-21 Score=224.93 Aligned_cols=362 Identities=15% Similarity=0.130 Sum_probs=234.5
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~ 609 (959)
.+++++.+..+.+...+. ..+..+++|++|.+.++... ..+.+..|.++++|++|+|++ +.+..+ |.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE---TSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDY-------NQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCCEECT---TTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTT-------CTTCEECTT
T ss_pred CccCEEEecCCccCcCCh---hHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCC-------CccCccChh
Confidence 678888888877654322 23458888899988887631 123355678888899999988 455554 77
Q ss_pred cccccCCccEEeeccCCCccc-cchh--hccCCCCcEEecCCCcCCccc-chh-hhccccCCeeecCCccccccCCccCc
Q 002154 610 NIEKLLHLKYLSLAHQEAIER-LPEA--LCELYNLERLNVSGCSHLREL-PRG-IGKLRKLMYLYNAGTDSLRYLPAGID 684 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~~i~ 684 (959)
.++++++|++|+|++|. +.. .|.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+.
T Consensus 98 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 78888899999998888 654 4544 7888889999998887 5555 555 78888899999888843333344455
Q ss_pred CC--CCCCccCceeecCccCCCCCc-----cccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCC
Q 002154 685 EL--IRLRSVRKFVVGGGYDRACSL-----GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDG 757 (959)
Q Consensus 685 ~L--~~L~~L~~~~~~~~~~~~~~~-----~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 757 (959)
.+ .+|+.|++..+.........+ ..+..+++|+.|++.+..-........ .......+|+.|.++.+.....
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hccccccceeeEeecccccccc
Confidence 54 345555443332221111100 112344566667766542211111111 1122336788888876542221
Q ss_pred CccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcc
Q 002154 758 DEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLED 836 (959)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 836 (959)
........... ...+..+ ..++|+.|+++++.... ..|.++..+++|+.|++++|......| .++.+++|++
T Consensus 255 ~~~~~~~~~~~----~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 255 SFGHTNFKDPD----NFTFKGL-EASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTCCSSCCCC----TTTTGGG-TTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccchhhhccCc----ccccccc-cccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 11000000000 0001111 24689999999998876 558889999999999999995433334 6889999999
Q ss_pred eeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCc
Q 002154 837 LWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD 916 (959)
Q Consensus 837 L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 916 (959)
|+++++. +..++...+ ..+++|+.|+++++ .++.+... .+..+++|++|++++| .++.+|.
T Consensus 328 L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNF-LGSIDSRMF-----------ENLDKLEVLDLSYN-HIRALGDQ-----SFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp EECCSSC-CCEECGGGG-----------TTCTTCCEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSS-CCSCCCT
T ss_pred EECCCCc-cCCcChhHh-----------cCcccCCEEECCCC-cccccChh-----hccccccccEEECCCC-ccccCCH
Confidence 9999865 666654433 27899999999995 56655321 4678999999999996 6778876
Q ss_pred C-CCCCCCcceEEEccCc
Q 002154 917 H-LLQKSTLQGFGIYHCP 933 (959)
Q Consensus 917 ~-l~~l~~L~~L~l~~c~ 933 (959)
. +..+++|++|+++++|
T Consensus 389 ~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhccCCcccEEEccCCC
Confidence 4 5789999999998765
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.3e-21 Score=233.69 Aligned_cols=144 Identities=16% Similarity=0.096 Sum_probs=110.0
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~ 609 (959)
..++++.+..+.+..++. ..+..+++|++|+++++. +....|..|.++++|++|+|++ +.+..+ |.
T Consensus 33 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 99 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN---TTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTA-------NPLIFMAET 99 (606)
T ss_dssp TTCCEEECTTCCCSEECT---TTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTT-------CCCSEECTT
T ss_pred CcCcEEEccCCccCcCCh---hHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCC-------CcccccChh
Confidence 678999998887765432 234589999999999987 4455677789999999999998 555544 67
Q ss_pred cccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCccccccC-CccCcCC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRYL-PAGIDEL 686 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L 686 (959)
.++++++|++|++++|. +..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++| .+..+ |..++.+
T Consensus 100 ~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 176 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSL 176 (606)
T ss_dssp TTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTT
T ss_pred hhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccC-cccccChhhhhhh
Confidence 88999999999999998 8777 5678899999999999887 66552 33444889999999888 44444 4456777
Q ss_pred CCCC
Q 002154 687 IRLR 690 (959)
Q Consensus 687 ~~L~ 690 (959)
++|+
T Consensus 177 ~~L~ 180 (606)
T 3t6q_A 177 QQAT 180 (606)
T ss_dssp TTCC
T ss_pred cccc
Confidence 7777
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=7.6e-22 Score=218.12 Aligned_cols=301 Identities=19% Similarity=0.218 Sum_probs=233.0
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++++.+..+....++. +..+++|++|.+.++.. .. ++. +.++++|++|++++ +.+..+| .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-----~~~~~~L~~L~l~~n~i---~~-~~~-~~~l~~L~~L~L~~-------n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNGNQI---TD-ISP-LSNLVKLTNLYIGT-------NKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCC---CC-CGG-GTTCTTCCEEECCS-------SCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-----hhhcCCccEEEccCCcc---cc-chh-hhcCCcCCEEEccC-------CcccCch-H
Confidence 567888888877664432 34799999999999873 33 233 88999999999999 5677775 5
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
++++++|++|++++|. +..+|. +.++++|++|++++|..+..++ .+..+++|++|++++| .+..++. +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchh-hccCCCCC
Confidence 8999999999999999 988887 8999999999999997666655 4899999999999998 4555554 78888999
Q ss_pred ccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchh
Q 002154 691 SVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEED 770 (959)
Q Consensus 691 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 770 (959)
+|++..+... .+..+..+++|+.+.+.+..-. .. ..+..+++|+.|+++.+.....
T Consensus 181 ~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~~L~~L~l~~n~l~~~------------- 236 (347)
T 4fmz_A 181 SLSLNYNQIE-----DISPLASLTSLHYFTAYVNQIT-DI-----TPVANMTRLNSLKIGNNKITDL------------- 236 (347)
T ss_dssp EEECTTSCCC-----CCGGGGGCTTCCEEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred EEEccCCccc-----ccccccCCCccceeecccCCCC-CC-----chhhcCCcCCEEEccCCccCCC-------------
Confidence 8887655433 2334778888888888764321 11 1166788999999998863211
Q ss_pred hHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCc
Q 002154 771 KDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGN 850 (959)
Q Consensus 771 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~ 850 (959)
..+..+++|+.|++++|.... + ..+..+++|+.|++++| .+..++.++.+++|+.|++++|. +...+.
T Consensus 237 ------~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 237 ------SPLANLSQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp ------GGGTTCTTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred ------cchhcCCCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh
Confidence 126678899999999998776 3 46788999999999999 66667888999999999999875 443332
Q ss_pred cccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCC
Q 002154 851 EFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCP 909 (959)
Q Consensus 851 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~ 909 (959)
..+ ..+++|+.|++++++ ++.++. ...+++|++|++++|+
T Consensus 305 ~~l-----------~~l~~L~~L~L~~n~-l~~~~~-------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVI-----------GGLTNLTTLFLSQNH-ITDIRP-------LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH-----------HTCTTCSEEECCSSS-CCCCGG-------GGGCTTCSEESSSCC-
T ss_pred hHh-----------hccccCCEEEccCCc-cccccC-------hhhhhccceeehhhhc
Confidence 222 268999999999964 666543 5679999999999985
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.5e-21 Score=224.57 Aligned_cols=318 Identities=17% Similarity=0.207 Sum_probs=206.2
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.++++++|.+.++... . +|. +..+++|++|+|++ +.+..+|. ++++++|++|++++|. +..+|. +
T Consensus 44 ~l~~l~~L~l~~~~i~---~-l~~-~~~l~~L~~L~Ls~-------n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK---S-IDG-VEYLNNLTQINFSN-------NQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSCCC---C-CTT-GGGCTTCCEEECCS-------SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCCCc---c-Ccc-hhhhcCCCEEECCC-------CccCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 4678999999988643 3 343 78899999999999 66777876 9999999999999998 888887 9
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
+++++|++|++++|. +..+|. +.++++|++|++++| .+..+| .++.+++|+.|.+.. . ...+..+.++++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~-----~~~~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN-Q-----VTDLKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-S-----CCCCGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC-c-----ccCchhhccCCC
Confidence 999999999999987 888876 899999999999998 556665 478888888887642 1 112344777788
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCcccc-ccCC---CchhhHHHHhhhCCCCCCCceEEEe
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQA-GRRE---NEEDKDERLLEALGPPPNLKKLVID 791 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~l~~~~~L~~L~l~ 791 (959)
|+.|++.+..- ... ..+..+++|+.|+++.+.......... .... ....... ....+..+++|+.|+++
T Consensus 179 L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 179 LERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 251 (466)
T ss_dssp CCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECC
T ss_pred CCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECC
Confidence 88888776432 111 235567778888887765322111000 0000 0000000 00122334455555555
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccc
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLR 871 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 871 (959)
+|.... . +. +..+++|+.|++++| .+..+++++.+++|+.|++++|. +..++. ...+++|+
T Consensus 252 ~n~l~~--~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~ 312 (466)
T 1o6v_A 252 NNQISN--L-AP-LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDISP-------------ISNLKNLT 312 (466)
T ss_dssp SSCCCC--C-GG-GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCGG-------------GGGCTTCS
T ss_pred CCcccc--c-hh-hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCchh-------------hcCCCCCC
Confidence 554443 2 11 444555555555555 33333445555555555555433 222211 23677888
Q ss_pred eeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 872 RLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 872 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
.|+++++ ++..+.. ...+++|+.|++++| .+..++ .+..+++|+.|++++|+.
T Consensus 313 ~L~L~~n-~l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 313 YLTLYFN-NISDISP-------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EEECCSS-CCSCCGG-------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred EEECcCC-cCCCchh-------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 8888875 4554432 567889999999887 566664 567789999999988853
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.8e-22 Score=237.50 Aligned_cols=335 Identities=16% Similarity=0.086 Sum_probs=203.7
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCcccc-chhh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERL-PEAL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~l-p~~i 635 (959)
+.++.|+++++. +..+.|..|.++++|++|+|++ +.+..+ |..++++++|++|+|++|. +..+ |..+
T Consensus 33 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 101 (606)
T 3t6q_A 33 NSTECLEFSFNV---LPTIQNTTFSRLINLTFLDLTR-------CQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETAL 101 (606)
T ss_dssp TTCCEEECTTCC---CSEECTTTSTTCTTCSEEECTT-------CCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTT
T ss_pred CcCcEEEccCCc---cCcCChhHhccCccceEEECCC-------CccceeChhhccCccccCeeeCCCCc-ccccChhhh
Confidence 479999999987 4555677799999999999999 555554 7789999999999999998 7665 6789
Q ss_pred ccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCccccccCC-ccCcCCCCCCccCceeecCccCCCCCccccccC
Q 002154 636 CELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVVGGGYDRACSLGSLKKL 713 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L 713 (959)
+++++|++|++++|. +..+ |..+.++++|++|++++| .+..++ +.+..+++|++|++..+.... .....+..+
T Consensus 102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l 176 (606)
T 3t6q_A 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY---LSKEDMSSL 176 (606)
T ss_dssp SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE---ECHHHHHTT
T ss_pred cccccccEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc---cChhhhhhh
Confidence 999999999999987 7776 677899999999999998 455542 344458899998876554332 222334455
Q ss_pred CCCCC--ceEeCCCCC--CC------------------------------------------------------------
Q 002154 714 NLLRQ--CSIDGLGGV--SD------------------------------------------------------------ 729 (959)
Q Consensus 714 ~~L~~--L~i~~~~~~--~~------------------------------------------------------------ 729 (959)
++|+. +.+.+..-. ..
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 55552 333221100 00
Q ss_pred ---------hhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCC
Q 002154 730 ---------AGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVV 800 (959)
Q Consensus 730 ---------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 800 (959)
........+..+++|+.|+++.+... .++..+..+++|+.|++++|.... .
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~lp~~l~~l~~L~~L~l~~n~l~~--~ 316 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------------------ELPSGLVGLSTLKKLVLSANKFEN--L 316 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS------------------CCCSSCCSCTTCCEEECTTCCCSB--G
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC------------------CCChhhcccccCCEEECccCCcCc--C
Confidence 00000011233444555555444321 223344555666666666665554 4
Q ss_pred CcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeC---ccccCCCCC------------CCCcc
Q 002154 801 PINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVG---NEFLGVESD------------TDGSS 863 (959)
Q Consensus 801 ~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~---~~~~~~~~~------------~~~~~ 863 (959)
+|..+..+++|+.|++++|.....++ .++.+++|+.|+++++. +..++ ..+...... .....
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 34555566666666666664333443 25566666666666543 33221 111100000 00011
Q ss_pred ccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 864 VIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 864 ~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+..+++|+.|+++++ .+..... +..+..+++|+.|++++|......|..+..+++|++|++++|+.
T Consensus 396 ~~~l~~L~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 396 FKECPQLELLDLAFT-RLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTTCTTCSEEECTTC-CEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred hcCCccCCeEECCCC-cCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 224455666665553 2222211 01255678888888888754444566778889999999988863
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.3e-21 Score=228.89 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=91.5
Q ss_pred CCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC----CCCCcCCCcceeecCccCceE-eCccccC
Q 002154 780 GPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP----PLGKLPSLEDLWIQGMKSVKR-VGNEFLG 854 (959)
Q Consensus 780 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~l~~~~~l~~-i~~~~~~ 854 (959)
..+++|+.|++++|.... ..|.++..+++|+.|++++| .++.++ .++.+++|+.|+++++. +.. ++...+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCC
T ss_pred cCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhc
Confidence 345677777777776655 33666677777777777777 444433 36677777777777654 333 4433221
Q ss_pred CCC-C---------CCCccccCC-CccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcC-CCCCC
Q 002154 855 VES-D---------TDGSSVIAF-PKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDH-LLQKS 922 (959)
Q Consensus 855 ~~~-~---------~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~-l~~l~ 922 (959)
.-. . ........+ ++|+.|+++++ +++.++. ....+++|+.|++++| .++.+|.. +..++
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK------DVTHLQALQELNVASN-QLKSVPDGVFDRLT 497 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT------TTTSSCCCSEEECCSS-CCCCCCTTSTTTCT
T ss_pred CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh------hhcCCCCCCEEECCCC-CCCCCCHHHHhcCC
Confidence 000 0 000011133 57888888874 6766665 4557899999999996 67888887 78899
Q ss_pred CcceEEEccCc
Q 002154 923 TLQGFGIYHCP 933 (959)
Q Consensus 923 ~L~~L~l~~c~ 933 (959)
+|+.|+++++|
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 99999998876
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=222.43 Aligned_cols=296 Identities=19% Similarity=0.169 Sum_probs=193.5
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++++.|++.++. +..+.+..|.++++|++|+|++ +.+..+ |..++++++|++|+|++|. ++.+|.. +
T Consensus 32 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNE-------NIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CCCcEEECCCCc---cceECHhHccCCCCCCEEECCC-------CccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 578888888876 4444566688888899999988 555555 6778888899999998888 8888764 6
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
.++++|++|++++|......|..+..+++|++|++++|......|..+..+++|++|++..+... ......+.++++
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~ 177 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---SIPTEALSHLHG 177 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS---SCCHHHHTTCTT
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc---ccChhHhcccCC
Confidence 78889999999888733334567888888999988887433333456777888888776655433 222234666777
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCC
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRG 795 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 795 (959)
|+.|.+.+..- .......+..+++|+.|+++.+.... .+........+|+.|++++|..
T Consensus 178 L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 178 LIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWPYLD-----------------TMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp CCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCTTCC-----------------EECTTTTTTCCCSEEEEESSCC
T ss_pred CcEEeCCCCcC----cEeChhhcccCcccceeeCCCCcccc-----------------ccCcccccCccccEEECcCCcc
Confidence 77777765321 12222345667777888877654111 0112222334778888887776
Q ss_pred CCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCcccee
Q 002154 796 RRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRL 873 (959)
Q Consensus 796 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L 873 (959)
.. +++..+..+++|+.|+|++|. +..++ .+..+++|+.|+|.++. +..++...+ ..+++|+.|
T Consensus 237 ~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----------~~l~~L~~L 301 (477)
T 2id5_A 237 TA--VPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF-----------RGLNYLRVL 301 (477)
T ss_dssp CS--CCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB-----------TTCTTCCEE
T ss_pred cc--cCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECHHHh-----------cCcccCCEE
Confidence 65 533456677788888887773 44443 36677778888777654 555533222 256777777
Q ss_pred eecccccccccccccccccccccCcccceeeeecCC
Q 002154 874 RFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCP 909 (959)
Q Consensus 874 ~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~ 909 (959)
+++++ +++.++.. .+..+++|+.|++++++
T Consensus 302 ~L~~N-~l~~~~~~-----~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 302 NVSGN-QLTTLEES-----VFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSS-CCSCCCGG-----GBSCGGGCCEEECCSSC
T ss_pred ECCCC-cCceeCHh-----HcCCCcccCEEEccCCC
Confidence 77773 55555431 23456777777777754
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=9.9e-22 Score=233.09 Aligned_cols=133 Identities=19% Similarity=0.163 Sum_probs=79.2
Q ss_pred CCCCCCceEEEeeeCCCCCCCCc-ChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCc-eEeCccccCCC
Q 002154 780 GPPPNLKKLVIDEYRGRRNVVPI-NWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSV-KRVGNEFLGVE 856 (959)
Q Consensus 780 ~~~~~L~~L~l~~~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l-~~i~~~~~~~~ 856 (959)
..+++|+.|++++|.... .++ ..+..+++|+.|++++|......| .++.+++|+.|++.+|.-. ..++..
T Consensus 393 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~----- 465 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----- 465 (570)
T ss_dssp ETCTTCCEEECTTSEEES--CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----
T ss_pred cccCCCCEEEccCCcccc--ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-----
Confidence 344555555555554433 212 345556666666666663332233 3455666666666665421 123322
Q ss_pred CCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCC-cCCCCCCCcceEEEccCc
Q 002154 857 SDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP-DHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 857 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c~ 933 (959)
+..+++|+.|+++++ .++.+... .+..+++|++|++++| .++.+| ..+..+++|++|+++++|
T Consensus 466 -------~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 466 -------FTELRNLTFLDLSQC-QLEQLSPT-----AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -------CTTCTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------hhcccCCCEEECCCC-ccccCChh-----hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 236788888888875 45544221 3567899999999987 566665 457788999999998854
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=228.43 Aligned_cols=364 Identities=16% Similarity=0.120 Sum_probs=219.1
Q ss_pred EEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-ccccc
Q 002154 534 LHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIE 612 (959)
Q Consensus 534 r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~ 612 (959)
+++.+..+....+|..+ .++|+.|+++++. +....|..|.++++|++|+|++ +.+..+ |..++
T Consensus 3 ~~l~ls~n~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL------SQKTTILNISQNY---ISELWTSDILSLSKLRILIISH-------NRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSC------CTTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCS-------SCCCEEEGGGGT
T ss_pred ceEecCCCCcccccccc------cccccEEECCCCc---ccccChhhccccccccEEecCC-------CccCCcChHHhh
Confidence 34566666666555433 2899999999987 4555677799999999999999 666666 77899
Q ss_pred ccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcc--cchhhhccccCCeeecCCccccccCCccCcCCCCC-
Q 002154 613 KLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRE--LPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRL- 689 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L- 689 (959)
++++|++|+|++|. ++.+|.. .+++|++|++++|. +.. +|..++++++|++|++++| .+.. ..+..+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~ 139 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLN 139 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSC
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCc-ccch--hhccccccce
Confidence 99999999999998 9999987 89999999999988 654 6789999999999999998 3433 346667777
Q ss_pred -CccCceeecC--ccCCCCCccc-----------------------cccCCCCCCceEeCCCC---CCChhhhHhhccc-
Q 002154 690 -RSVRKFVVGG--GYDRACSLGS-----------------------LKKLNLLRQCSIDGLGG---VSDAGEARRAELE- 739 (959)
Q Consensus 690 -~~L~~~~~~~--~~~~~~~~~~-----------------------L~~L~~L~~L~i~~~~~---~~~~~~~~~~~l~- 739 (959)
+.|++..+.. .......+.. +..+++|+.+++.+... ......... .+.
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~ 218 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT 218 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence 7776665443 1111111111 11223333333322110 000000000 000
Q ss_pred --------------------------CCCCCCceEEeecCCCC-CCcccc----ccCC------------Cch-hhHHHH
Q 002154 740 --------------------------KKKNLFDLDLHFGHSRD-GDEEQA----GRRE------------NEE-DKDERL 775 (959)
Q Consensus 740 --------------------------~~~~L~~L~l~~~~~~~-~~~~~~----~~~~------------~~~-~~~~~~ 775 (959)
..++|+.|+++.+...+ .+.... .... ..+ ......
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 12355566665543211 000000 0000 000 000000
Q ss_pred hhh------------------CCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCc---CC-CCCCcCC
Q 002154 776 LEA------------------LGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEH---LP-PLGKLPS 833 (959)
Q Consensus 776 l~~------------------l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~---l~-~l~~l~~ 833 (959)
+.. ...+++|+.|++++|.... ..|.++..+++|+.|++++|. +.. +| .++.+++
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKS 375 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTT
T ss_pred cccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh--hhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCC
Confidence 000 1456678888888777655 336677777888888888773 333 22 2667778
Q ss_pred CcceeecCccCceE-eCccccCCC-CCC---------CCccccCC-CccceeeecccccccccccccccccccccCcccc
Q 002154 834 LEDLWIQGMKSVKR-VGNEFLGVE-SDT---------DGSSVIAF-PKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLS 901 (959)
Q Consensus 834 L~~L~l~~~~~l~~-i~~~~~~~~-~~~---------~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 901 (959)
|++|+++++. +.. ++...+... ... .......+ ++|+.|+++++ +++.++. ....+++|+
T Consensus 376 L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~------~~~~l~~L~ 447 (520)
T 2z7x_B 376 LQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK------QVVKLEALQ 447 (520)
T ss_dssp CCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG------GGGGCTTCC
T ss_pred CCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch------hhhcCCCCC
Confidence 8888887654 333 443321100 000 00001122 56777777763 5555554 455789999
Q ss_pred eeeeecCCCCcCCCcC-CCCCCCcceEEEccCc
Q 002154 902 SLSIVYCPKLKALPDH-LLQKSTLQGFGIYHCP 933 (959)
Q Consensus 902 ~L~i~~C~~L~~lp~~-l~~l~~L~~L~l~~c~ 933 (959)
.|++++| .++.+|.. +..+++|++|+++++|
T Consensus 448 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 448 ELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 9999996 67788876 7788999999998876
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.8e-21 Score=234.05 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=211.7
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE- 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~- 609 (959)
.+++++.+..+.+..++.. .+..+++|++|+++++. +....|..|.++++|++|+|++ +.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~-------n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQH-------NELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCS-------SCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCC-------CccCccChh
Confidence 7899999998887655432 24588999999999886 4555677789999999999998 66778876
Q ss_pred cccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCcc-C--cC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAG-I--DE 685 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i--~~ 685 (959)
.++++++|++|+|++|. +..+| ..++++++|++|++++|......|..+.++++|++|++++| .+..+++. + ..
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFA 169 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccc
Confidence 58999999999999998 88777 57899999999999998743444667889999999999988 45555543 2 34
Q ss_pred CCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChh-----------------------hhHhhcccCC-
Q 002154 686 LIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAG-----------------------EARRAELEKK- 741 (959)
Q Consensus 686 L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~-----------------------~~~~~~l~~~- 741 (959)
+++|++|++..+.... .....+..+.+|+.+.+.++.-..... ......+..+
T Consensus 170 ~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKE---FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp TCEESEEECTTCCCCC---BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred cccccEEECCCCcccc---cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 5778888765543332 222334444444444433321100000 0001111112
Q ss_pred -CCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc
Q 002154 742 -KNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR 820 (959)
Q Consensus 742 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 820 (959)
++|+.|+++.+..... ....+..+++|+.|++++|.... .+|.++..+++|+.|++++|.
T Consensus 247 ~~~L~~L~Ls~n~l~~~-----------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVV-----------------GNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp GSCCCEEECTTSCCCEE-----------------CTTTTTTCTTCCEEECCSCCBSE--ECTTTTTTCTTCCEEECTTCB
T ss_pred cCCCCEEECCCCCcCcc-----------------CcccccCcccccEeeCCCCccCc--cChhhhcCCCCccEEeccchh
Confidence 1244444444431100 01234445666666666665544 335555566666666665542
Q ss_pred CCC-----cCC-----CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccc-----------
Q 002154 821 NCE-----HLP-----PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCME----------- 879 (959)
Q Consensus 821 ~~~-----~l~-----~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~----------- 879 (959)
... .+| .++.+++|++|++.++. +..++...+ ..+++|+.|+++++.
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----------~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-----------TGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-----------TTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-----------ccccCCcEEECCCCchhhhhcchhhh
Confidence 111 222 34455666666665543 333322211 244555555554431
Q ss_pred ----------------cccccccccccccccccCcccceeeeecCCCCcCCC-cCCCCCCCcceEEEccCc
Q 002154 880 ----------------ELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP-DHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 880 ----------------~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c~ 933 (959)
++..+.. ..+..+++|+.|++++|.....+| ..+..+++|++|++++|.
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIES-----DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred cccccCcCceEECCCCCCCeECh-----hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 2222211 135567888888888875444565 467778889999888875
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=232.17 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=107.8
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-c
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-E 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~ 609 (959)
..++++.+..+.+..++.. .+..+++|++|+++++. +..+.+..|.++++|++|+|++ +.+..+| .
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~-------n~l~~~~~~ 94 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTG-------NPIQSLALG 94 (570)
T ss_dssp SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTT-------CCCCEECTT
T ss_pred ccccEEEccCCccCccChh---HhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcC-------CcCCccCHh
Confidence 6788898888876643322 24488999999999886 4455566788899999999998 5566654 6
Q ss_pred cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcc--cchhhhccccCCeeecCCccccccC-CccCcC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRE--LPRGIGKLRKLMYLYNAGTDSLRYL-PAGIDE 685 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~ 685 (959)
.++++.+|++|++++|. ++.+|. .++++++|++|++++|. +.. +|..+.++++|++|++++| .+..+ |..++.
T Consensus 95 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 171 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV 171 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHH
T ss_pred hhcCccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCC-ccceecHHHccc
Confidence 78889999999999888 888876 68889999999998876 553 6888888999999999887 33433 334555
Q ss_pred CCCC
Q 002154 686 LIRL 689 (959)
Q Consensus 686 L~~L 689 (959)
+++|
T Consensus 172 l~~L 175 (570)
T 2z63_A 172 LHQM 175 (570)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 5555
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4e-21 Score=209.50 Aligned_cols=231 Identities=23% Similarity=0.268 Sum_probs=158.1
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKL 662 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 662 (959)
....++.|+|++ +.+..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..+.++
T Consensus 79 ~~~~l~~L~L~~-------n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRS-------VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEES-------SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEccC-------CCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 458899999999 6788999999999999999999998 88999999999999999999987 77999999999
Q ss_pred ccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCC
Q 002154 663 RKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKK 742 (959)
Q Consensus 663 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 742 (959)
++|++|++++|.....+|..++... .. ..+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~------------------~~----------------------------~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD------------------AS----------------------------GEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-------------------C----------------------------CCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc------------------ch----------------------------hhhccCC
Confidence 9999999999866666665433200 00 0012223
Q ss_pred CCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCC
Q 002154 743 NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNC 822 (959)
Q Consensus 743 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 822 (959)
+|+.|++++|.... + |.++..+++|+.|+|++|. +
T Consensus 184 -----------------------------------------~L~~L~L~~n~l~~--l-p~~l~~l~~L~~L~L~~N~-l 218 (328)
T 4fcg_A 184 -----------------------------------------NLQSLRLEWTGIRS--L-PASIANLQNLKSLKIRNSP-L 218 (328)
T ss_dssp -----------------------------------------TCCEEEEEEECCCC--C-CGGGGGCTTCCEEEEESSC-C
T ss_pred -----------------------------------------CCCEEECcCCCcCc--c-hHhhcCCCCCCEEEccCCC-C
Confidence 34444444444333 4 4445555555555555552 2
Q ss_pred CcCC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccc
Q 002154 823 EHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLS 901 (959)
Q Consensus 823 ~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 901 (959)
..+| .++.+++|+.|++++|.....++..+. .+++|+.|++++|+.+..++. .+..+++|+
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~------------~l~~L~~L~L~~n~~~~~~p~------~~~~l~~L~ 280 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFG------------GRAPLKRLILKDCSNLLTLPL------DIHRLTQLE 280 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT------------CCCCCCEEECTTCTTCCBCCT------TGGGCTTCC
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhc------------CCCCCCEEECCCCCchhhcch------hhhcCCCCC
Confidence 2332 345555555555555554443333221 566677777776665555554 356778888
Q ss_pred eeeeecCCCCcCCCcCCCCCCCcceEEEcc
Q 002154 902 SLSIVYCPKLKALPDHLLQKSTLQGFGIYH 931 (959)
Q Consensus 902 ~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~ 931 (959)
.|++++|+.+..+|..+.++++|+.+.+..
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 888888888888888888888888877664
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.1e-21 Score=229.01 Aligned_cols=341 Identities=14% Similarity=0.110 Sum_probs=202.3
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
..++++.+..+.+...+. ..+..+++|++|.++++. +....|..|.++++|++|+|++ +.+..+|..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSD-------NHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTT-------SCCCSCCHH
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCC-------CccCccCHH
Confidence 678899998887664322 234589999999999987 4455667789999999999998 667666654
Q ss_pred -ccccCCccEEeeccCCCccc--cchhhccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCccccccCCccCcCC
Q 002154 611 -IEKLLHLKYLSLAHQEAIER--LPEALCELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRYLPAGIDEL 686 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 686 (959)
++++++|++|+|++|. +.. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8999999999999998 774 46778999999999999987677776 578899999999999885444567777777
Q ss_pred CCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCC---------------------------CCChhhhHhhccc
Q 002154 687 IRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGG---------------------------VSDAGEARRAELE 739 (959)
Q Consensus 687 ~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~---------------------------~~~~~~~~~~~l~ 739 (959)
++|++|++..+.... .....+..+++|+.|++.+..- ...........+.
T Consensus 172 ~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 172 RDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp SEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred ccCceEecccCcccc---cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 777776654332211 0000012233444444433210 0000111222234
Q ss_pred CCCCCCceEEeecCCCCCCccc------cccCCCc----------hhh--HHHHhhhCCCCCCCceEEEeeeCCCCCCCC
Q 002154 740 KKKNLFDLDLHFGHSRDGDEEQ------AGRRENE----------EDK--DERLLEALGPPPNLKKLVIDEYRGRRNVVP 801 (959)
Q Consensus 740 ~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~----------~~~--~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 801 (959)
.+.+|+.++++.+......... ....... ... ...+.......++|+.|.++++.... +
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~--i- 325 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL--V- 325 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC--C-
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc--C-
Confidence 4556666666554321110000 0000000 000 00000000113478888888877665 6
Q ss_pred cChh-hcccccceeeecCccCCCcCC----CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeec
Q 002154 802 INWI-MSLTNLRDLSLNWWRNCEHLP----PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFV 876 (959)
Q Consensus 802 p~~~-~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 876 (959)
|.++ ..+++|+.|++++|.....+| .++.+++|+.|+++++. ++.++.... ....+++|+.|+++
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---------~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGE---------ILLTLKNLTSLDIS 395 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHH---------HGGGCTTCCEEECT
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchh---------hhhcCCCCCEEECC
Confidence 5554 578888888888885443332 36778888888887754 444321000 01256666677666
Q ss_pred ccccccccccccccccccccCcccceeeeecC
Q 002154 877 CMEELEEWDCGTAIKGEIIIMARLSSLSIVYC 908 (959)
Q Consensus 877 ~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C 908 (959)
++ +++.++. ....+++|++|++++|
T Consensus 396 ~N-~l~~lp~------~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 396 RN-TFHPMPD------SCQWPEKMRFLNLSST 420 (549)
T ss_dssp TC-CCCCCCS------CCCCCTTCCEEECTTS
T ss_pred CC-CCccCCh------hhcccccccEEECCCC
Confidence 63 4554443 2334455555555554
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=218.43 Aligned_cols=295 Identities=20% Similarity=0.177 Sum_probs=227.2
Q ss_pred CcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccchh-hhc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELPRG-IGK 661 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 661 (959)
+.|++|+|++ +.+..+ |..+.++++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +.+
T Consensus 32 ~~l~~L~L~~-------n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGK-------NRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCS-------SCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCCcEEECCC-------CccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 5899999999 667776 5679999999999999998 7776 7789999999999999987 8888865 689
Q ss_pred cccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCC
Q 002154 662 LRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK 741 (959)
Q Consensus 662 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 741 (959)
+++|++|++++|......|..+..+++|++|.+..+... ......+..+++|+.|.+.+..- .......+..+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~~l 175 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCNL----TSIPTEALSHL 175 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---EECTTSSTTCTTCCEEEEESCCC----SSCCHHHHTTC
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccc---eeChhhccCCCCCCEEECCCCcC----cccChhHhccc
Confidence 999999999999544444567889999999987655433 22334567888899999887432 12223446778
Q ss_pred CCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccC
Q 002154 742 KNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRN 821 (959)
Q Consensus 742 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 821 (959)
++|+.|+++.+...... ...+..+++|+.|+++++..... + |.......+|+.|++++| .
T Consensus 176 ~~L~~L~l~~n~i~~~~-----------------~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~n-~ 235 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIR-----------------DYSFKRLYRLKVLEISHWPYLDT-M-TPNCLYGLNLTSLSITHC-N 235 (477)
T ss_dssp TTCCEEEEESCCCCEEC-----------------TTCSCSCTTCCEEEEECCTTCCE-E-CTTTTTTCCCSEEEEESS-C
T ss_pred CCCcEEeCCCCcCcEeC-----------------hhhcccCcccceeeCCCCccccc-c-CcccccCccccEEECcCC-c
Confidence 99999999987632111 22566788999999999876542 4 444445569999999999 5
Q ss_pred CCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcc
Q 002154 822 CEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMAR 899 (959)
Q Consensus 822 ~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~ 899 (959)
++.+| .++.+++|+.|+|+++. +..++...+ ..+++|+.|+++++ ++..+... .+..+++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----------~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~ 297 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML-----------HELLRLQEIQLVGG-QLAVVEPY-----AFRGLNY 297 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC-----------TTCTTCCEEECCSS-CCSEECTT-----TBTTCTT
T ss_pred ccccCHHHhcCccccCeeECCCCc-CCccChhhc-----------cccccCCEEECCCC-ccceECHH-----HhcCccc
Confidence 66777 47889999999999865 667765433 27899999999984 56665432 4668999
Q ss_pred cceeeeecCCCCcCCCc-CCCCCCCcceEEEccCcc
Q 002154 900 LSSLSIVYCPKLKALPD-HLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 900 L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~l~~c~~ 934 (959)
|+.|++++| .++.+|. .+..+++|++|+++++|-
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 999999997 7888875 457889999999998763
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=4.1e-20 Score=228.37 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=111.2
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~ 609 (959)
.++++|.+..+.+..... ..+..+++|++|+++++.. ...+.|..|.++++|++|+|++ +.+..+ |.
T Consensus 24 ~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~-------N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGS-------SKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTT-------CCCCEECTT
T ss_pred CCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCC-------CcCcccCHh
Confidence 789999999887764322 2345899999999998842 2333467789999999999998 555554 78
Q ss_pred cccccCCccEEeeccCCCccc-cchh--hccCCCCcEEecCCCcCCccc--chhhhccccCCeeecCCccccccCCccCc
Q 002154 610 NIEKLLHLKYLSLAHQEAIER-LPEA--LCELYNLERLNVSGCSHLREL--PRGIGKLRKLMYLYNAGTDSLRYLPAGID 684 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 684 (959)
.++++++|++|+|++|. +.. +|.. ++++++|++|++++|. +..+ +..+.+|++|++|++++|......|..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 89999999999999998 654 5654 8899999999999887 5554 35688999999999988743333444455
Q ss_pred CC--CCCCccCcee
Q 002154 685 EL--IRLRSVRKFV 696 (959)
Q Consensus 685 ~L--~~L~~L~~~~ 696 (959)
.+ ++|+.|.+..
T Consensus 170 ~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 170 PLQGKTLSFFSLAA 183 (844)
T ss_dssp HHHHCSSCCCEECC
T ss_pred cccCCccceEECCC
Confidence 44 5555554443
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=4.9e-21 Score=215.09 Aligned_cols=284 Identities=16% Similarity=0.171 Sum_probs=225.3
Q ss_pred cCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccc-hhh
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELP-RGI 659 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i 659 (959)
.+.++++|++++ +.+..+|.. +..+++|++|+|++|. +..+|. .+.++++|++|++++|. +..+| ..+
T Consensus 43 ~l~~l~~l~l~~-------~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKN-------STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEES-------CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCCceEEEecC-------CchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHh
Confidence 468899999999 778888876 6889999999999998 888775 88999999999999987 76665 558
Q ss_pred hccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcc
Q 002154 660 GKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAEL 738 (959)
Q Consensus 660 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 738 (959)
..+++|++|++++| .+..+|.+ ++++++|++|++..+.... .....+..+++|+.|.+.+..- . . ..+
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l-~---~---~~~ 182 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSNRL-T---H---VDL 182 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTSSCTTCCEEECCSSCC-S---B---CCG
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc---cChhhccCCCCCCEEECCCCcC-C---c---ccc
Confidence 99999999999998 67788877 4889999999887655432 2334467788888888876421 1 1 134
Q ss_pred cCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecC
Q 002154 739 EKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNW 818 (959)
Q Consensus 739 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 818 (959)
..+++|+.|+++.+. +..+..+++|+.|+++++.... + |.. .+++|+.|++++
T Consensus 183 ~~l~~L~~L~l~~n~----------------------l~~~~~~~~L~~L~l~~n~l~~--~-~~~--~~~~L~~L~l~~ 235 (390)
T 3o6n_A 183 SLIPSLFHANVSYNL----------------------LSTLAIPIAVEELDASHNSINV--V-RGP--VNVELTILKLQH 235 (390)
T ss_dssp GGCTTCSEEECCSSC----------------------CSEEECCSSCSEEECCSSCCCE--E-ECC--CCSSCCEEECCS
T ss_pred ccccccceeeccccc----------------------ccccCCCCcceEEECCCCeeee--c-ccc--ccccccEEECCC
Confidence 567889999998775 1233456789999999998776 5 433 358999999999
Q ss_pred ccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCc
Q 002154 819 WRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMA 898 (959)
Q Consensus 819 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~ 898 (959)
| .+..++.++.+++|+.|+++++. +..+....+ ..+++|+.|++++ ++++.++. ....+|
T Consensus 236 n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-----------~~l~~L~~L~L~~-n~l~~~~~------~~~~l~ 295 (390)
T 3o6n_A 236 N-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPF-----------VKMQRLERLYISN-NRLVALNL------YGQPIP 295 (390)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGG-----------TTCSSCCEEECCS-SCCCEEEC------SSSCCT
T ss_pred C-CCcccHHHcCCCCccEEECCCCc-CCCcChhHc-----------cccccCCEEECCC-CcCcccCc------ccCCCC
Confidence 9 56667788999999999999875 555533322 2789999999999 56777654 356789
Q ss_pred ccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 899 RLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 899 ~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+|+.|++++| .+..+|..+..+++|++|++++|+.
T Consensus 296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCEEECCCC-cceecCccccccCcCCEEECCCCcc
Confidence 9999999997 6888998888899999999999863
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=231.53 Aligned_cols=332 Identities=17% Similarity=0.114 Sum_probs=204.3
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCcccc-chh
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERL-PEA 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~l-p~~ 634 (959)
.+++++|+++++. +....|..|.++++|++|+|++ | ..+..+ |..++++++|++|+|++|. +..+ |..
T Consensus 23 p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~-----n-~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGS-----Q-YTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDA 92 (844)
T ss_dssp CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECT-----T-CCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTS
T ss_pred CCCcCEEECCCCc---CCccChhHCcccccCeEEeCCC-----C-CCccccCHHHhcCCCCCCEEECCCCc-CcccCHhH
Confidence 4789999999987 4555677799999999999999 2 235555 7789999999999999999 7766 789
Q ss_pred hccCCCCcEEecCCCcCCcccchh--hhccccCCeeecCCccccccCC--ccCcCCCCCCccCceeecCccCCCCCcccc
Q 002154 635 LCELYNLERLNVSGCSHLRELPRG--IGKLRKLMYLYNAGTDSLRYLP--AGIDELIRLRSVRKFVVGGGYDRACSLGSL 710 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L 710 (959)
++++++|++|+|++|.....+|.. +.+|++|++|++++| .+..++ ..++++++|++|++..+.... .....+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~---~~~~~l 168 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL---VCEHEL 168 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC---CCSGGG
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe---eCHHHc
Confidence 999999999999999733446665 899999999999998 444443 468999999999887654432 233444
Q ss_pred ccC--CCCCCceEeCCCCCCChhhhHhhcccCCC------CCCceEEeecCCCCCCccccccC-----------------
Q 002154 711 KKL--NLLRQCSIDGLGGVSDAGEARRAELEKKK------NLFDLDLHFGHSRDGDEEQAGRR----------------- 765 (959)
Q Consensus 711 ~~L--~~L~~L~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~----------------- 765 (959)
..+ ++|+.|.+....-.. .....+..+. .|+.|+++.+.............
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred ccccCCccceEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 444 678887776532211 1111122222 37888887664221111000000
Q ss_pred -----CCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceee
Q 002154 766 -----ENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWI 839 (959)
Q Consensus 766 -----~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 839 (959)
..........+..+ .+++|+.|+++++.... ++|.++..+++|+.|+|++|......+ .++.+++|++|++
T Consensus 245 ~~~~~~~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGL-ARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTT-TTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred ccccccccCCCChhhhhcc-ccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 00000000001111 13577777777776655 446667777777777777774322222 4667777777777
Q ss_pred cCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCcCCC
Q 002154 840 QGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHLL 919 (959)
Q Consensus 840 ~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~ 919 (959)
+++. +..+.... +..+++|+.|+++++ .+..++.. .+..+++|+.|++++| .++.++.
T Consensus 322 s~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~i~~--- 379 (844)
T 3j0a_A 322 SYNL-LGELYSSN-----------FYGLPKVAYIDLQKN-HIAIIQDQ-----TFKFLEKLQTLDLRDN-ALTTIHF--- 379 (844)
T ss_dssp ESCC-CSCCCSCS-----------CSSCTTCCEEECCSC-CCCCCCSS-----CSCSCCCCCEEEEETC-CSCCCSS---
T ss_pred CCCC-CCccCHHH-----------hcCCCCCCEEECCCC-CCCccChh-----hhcCCCCCCEEECCCC-CCCcccC---
Confidence 7654 33332211 125666777776663 44444321 2344566666666664 3443332
Q ss_pred CCCCcceEEEccC
Q 002154 920 QKSTLQGFGIYHC 932 (959)
Q Consensus 920 ~l~~L~~L~l~~c 932 (959)
+++|+.|++++|
T Consensus 380 -~~~L~~L~l~~N 391 (844)
T 3j0a_A 380 -IPSIPDIFLSGN 391 (844)
T ss_dssp -CCSCSEEEEESC
T ss_pred -CCCcchhccCCC
Confidence 444555555443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.6e-20 Score=212.42 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+++|+.|.++++.. .. +| +..+++|++|++++ +.+..+| ++++++|++|++++|. ++.+| +
T Consensus 62 ~l~~L~~L~Ls~n~l---~~-~~--~~~l~~L~~L~Ls~-------N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~ 123 (457)
T 3bz5_A 62 KLTGLTKLICTSNNI---TT-LD--LSQNTNLTYLACDS-------NKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--V 123 (457)
T ss_dssp GCTTCSEEECCSSCC---SC-CC--CTTCTTCSEEECCS-------SCCSCCC--CTTCTTCCEEECCSSC-CSCCC--C
T ss_pred ccCCCCEEEccCCcC---Ce-Ec--cccCCCCCEEECcC-------CCCceee--cCCCCcCCEEECCCCc-CCeec--C
Confidence 455555555555442 11 12 44455555555555 3344333 4555555555555554 44443 4
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCce
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKF 695 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 695 (959)
+++++|++|++++|. ++.+| +..+++|++|++++|..+..+ .++.+++|+.|++.
T Consensus 124 ~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 555555555555544 44442 445555555555555333333 24444444444443
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=9.3e-21 Score=223.50 Aligned_cols=342 Identities=15% Similarity=0.106 Sum_probs=229.5
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++|++|+++++. +....|..|.++++|++|+|++ +.+..++ ..++++++|++|+|++|. +..+|.. +
T Consensus 26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~-------n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKS-------SRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTT-------SCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH
T ss_pred CCccEEECcCCc---cCccChhhhhcCCcccEEECCC-------CCcCccChhhccccccCCEEECCCCc-cCccCHHHh
Confidence 789999999987 4455566789999999999999 5566654 679999999999999999 8888765 9
Q ss_pred ccCCCCcEEecCCCcCCcc--cchhhhccccCCeeecCCccccccCC-ccCcCCCCCCccCceeecCccCCCCCcccccc
Q 002154 636 CELYNLERLNVSGCSHLRE--LPRGIGKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVVGGGYDRACSLGSLKK 712 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~ 712 (959)
+++++|++|++++|. +.. .|..+.++++|++|++++|..+..+| ..+.++++|++|++..+... +.....+..
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~ 170 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKS 170 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---EECTTTTTT
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---ccChhhhhc
Confidence 999999999999987 664 46789999999999999986567776 46889999999988766543 234455677
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCcccccc--------------CCCchhhHHHHhhh
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGR--------------RENEEDKDERLLEA 778 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~ 778 (959)
+++|+.|.+..... .... ...+..+++|+.|+++.+............ ..........+...
T Consensus 171 l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 171 IRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp CSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred cccCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 78888888876432 1121 222345788999999987654321000000 00000111222233
Q ss_pred CCCCCCCceEEEeeeCCCCCC-------------------------CC--------cChhhcccccceeeecCccCCCcC
Q 002154 779 LGPPPNLKKLVIDEYRGRRNV-------------------------VP--------INWIMSLTNLRDLSLNWWRNCEHL 825 (959)
Q Consensus 779 l~~~~~L~~L~l~~~~~~~~~-------------------------~~--------p~~~~~l~~L~~L~L~~~~~~~~l 825 (959)
+...++|+.|.+.+|...... ++ +..+..+++|+.|++++| .++.+
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccC
Confidence 334445555555554322200 00 011123456777777776 34555
Q ss_pred CC-C-CCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCccccee
Q 002154 826 PP-L-GKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSL 903 (959)
Q Consensus 826 ~~-l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L 903 (959)
|. + +.+++|+.|+++++.-...++.... ....+++|+.|+++++ +++.++.. ...+..+++|+.|
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~~~l~~L~~L 392 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSA---------CKGAWPSLQTLVLSQN-HLRSMQKT---GEILLTLKNLTSL 392 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHT---------CTTSSTTCCEEECTTS-CCCCHHHH---HHHGGGCTTCCEE
T ss_pred CHHHHhcCccccEEEccCCccccccccchh---------hhhccccCcEEEccCC-cccccccc---hhhhhcCCCCCEE
Confidence 53 2 3578888888887652211111100 0236899999999984 56655320 0025679999999
Q ss_pred eeecCCCCcCCCcCCCCCCCcceEEEccCc
Q 002154 904 SIVYCPKLKALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 904 ~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~ 933 (959)
++++| +++.+|..+..+++|++|++++|.
T Consensus 393 ~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 393 DISRN-TFHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp ECTTC-CCCCCCSCCCCCTTCCEEECTTSC
T ss_pred ECCCC-CCccCChhhcccccccEEECCCCC
Confidence 99997 788999988889999999998875
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.6e-20 Score=214.09 Aligned_cols=310 Identities=17% Similarity=0.145 Sum_probs=226.3
Q ss_pred CCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchh
Q 002154 555 KGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 555 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
..+++|++|.++++.. .+ +| .+..+++|++|+|++ +.+..+| ++.+++|++|++++|. ++.+|
T Consensus 39 ~~l~~L~~L~Ls~n~l---~~-~~-~l~~l~~L~~L~Ls~-------n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI---TD-MT-GIEKLTGLTKLICTS-------NNITTLD--LSQNTNLTYLACDSNK-LTNLD-- 101 (457)
T ss_dssp HHHTTCCEEECCSSCC---CC-CT-TGGGCTTCSEEECCS-------SCCSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred hHcCCCCEEEccCCCc---cc-Ch-hhcccCCCCEEEccC-------CcCCeEc--cccCCCCCEEECcCCC-Cceee--
Confidence 3789999999999874 33 34 388999999999999 6677776 8999999999999999 88886
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCC
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLN 714 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 714 (959)
++++++|++|++++|. +..+| +..+++|++|++++| .+..++ ++++++|+.|++..+.... .+ .+..++
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~ 170 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQT 170 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCT
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccccCC
Confidence 8999999999999987 87786 889999999999998 566664 7888888888776553221 11 466788
Q ss_pred CCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeC
Q 002154 715 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYR 794 (959)
Q Consensus 715 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 794 (959)
+|+.|++.+..- ... .+..+++|+.|+++.+..... .+..+++|+.|++++|.
T Consensus 171 ~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 171 QLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp TCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSSC
T ss_pred cCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCCc
Confidence 888888876421 111 266788999999988763211 25667899999999999
Q ss_pred CCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceee
Q 002154 795 GRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLR 874 (959)
Q Consensus 795 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 874 (959)
... + | +..+++|+.|++++| .++.+| ++.+++|+.|.+.+. .++.+...... .........+++|+.|+
T Consensus 224 l~~--i-p--~~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~---~~~~~~~~~l~~L~~L~ 292 (457)
T 3bz5_A 224 LTE--I-D--VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNT---QLIYFQAEGCRKIKELD 292 (457)
T ss_dssp CSC--C-C--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCT---TCCEEECTTCTTCCCCC
T ss_pred ccc--c-C--ccccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCc---cCCcccccccccCCEEE
Confidence 887 6 5 678999999999999 555554 566777666655442 23333211100 00000123679999999
Q ss_pred eccccccccccccc--ccccccccCcccceeeeecCCCCcCCCcCCCCCCCcceEEEccCc
Q 002154 875 FVCMEELEEWDCGT--AIKGEIIIMARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 875 l~~~~~L~~~~~~~--~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~ 933 (959)
++++..+..++... -..-....+++|+.|++++| .++.++ +.++++|+.|+++++.
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 99988776665411 00012456788888888885 677774 7789999999998864
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=6.8e-20 Score=221.93 Aligned_cols=325 Identities=16% Similarity=0.118 Sum_probs=207.0
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccch-hh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPE-AL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~-~i 635 (959)
+++++|.++++. +....+..|.++++|++|+|++ +.+..+ |..++++++|++|+|++|. +..+|. .+
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~ 93 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGF-------NTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF 93 (680)
T ss_dssp TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCS-------SCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCC-------CccCccCHHHHhcccCcCEEECCCCc-cCccChhhh
Confidence 789999999987 4555666789999999999998 555555 6778999999999999998 999987 59
Q ss_pred ccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCcccc--cc
Q 002154 636 CELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSL--KK 712 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L--~~ 712 (959)
+++++|++|++++|. +..+| ..+.++++|++|++++|......|..++++++|++|++..+.... .....+ ..
T Consensus 94 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~ 169 (680)
T 1ziw_A 94 AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA---LKSEELDIFA 169 (680)
T ss_dssp TTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC---BCHHHHGGGT
T ss_pred ccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc---cCHHHhhccc
Confidence 999999999999987 77776 579999999999999995434445568889999998876554332 112222 23
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEee
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDE 792 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 792 (959)
+++|+.|++.+..- .......+..+.+|+.|.+..+.. .......+...+ ..++|+.|.+++
T Consensus 170 ~~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~~~l-------------~~~~~~~~~~~l-~~~~L~~L~L~~ 231 (680)
T 1ziw_A 170 NSSLKKLELSSNQI----KEFSPGCFHAIGRLFGLFLNNVQL-------------GPSLTEKLCLEL-ANTSIRNLSLSN 231 (680)
T ss_dssp TCEESEEECTTCCC----CCBCTTGGGGSSEECEEECTTCCC-------------HHHHHHHHHHHH-TTSCCCEEECTT
T ss_pred cccccEEECCCCcc----cccChhhhhhhhhhhhhhcccccc-------------ChhhHHHHHHHh-hhccccEEEccC
Confidence 46777777765321 122233455667777777755431 001111222222 236788888877
Q ss_pred eCCCCCCCCcChhhcccc--cceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCc
Q 002154 793 YRGRRNVVPINWIMSLTN--LRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPK 869 (959)
Q Consensus 793 ~~~~~~~~~p~~~~~l~~--L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 869 (959)
+.... ..|.++..++. |+.|++++|......| .++.+++|++|++.++. +..+....+ ..+++
T Consensus 232 n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----------~~l~~ 297 (680)
T 1ziw_A 232 SQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-----------HGLFN 297 (680)
T ss_dssp SCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-----------TTCTT
T ss_pred Ccccc--cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChhhh-----------cCCCC
Confidence 76655 44666766644 8888888774322222 46777888888887754 444433222 15566
Q ss_pred cceeeeccccccc-----ccccccccccccccCcccceeeeecCCCCcCC-CcCCCCCCCcceEEEccC
Q 002154 870 LRRLRFVCMEELE-----EWDCGTAIKGEIIIMARLSSLSIVYCPKLKAL-PDHLLQKSTLQGFGIYHC 932 (959)
Q Consensus 870 L~~L~l~~~~~L~-----~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l-p~~l~~l~~L~~L~l~~c 932 (959)
|+.|+++++..-. .++. .....+..+++|+.|++++|. +..+ |..+..+++|++|++++|
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~--i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPK--IDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEEECTTCBCCC------CCE--ECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccEEeccchhhhcccccccccc--cChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCC
Confidence 6666666421111 1110 000023455666666666653 3333 334555666666666655
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-20 Score=222.35 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=224.9
Q ss_pred cCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccch-hh
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPR-GI 659 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i 659 (959)
.+.++++|++++ +.+..+|.. ++++++|++|+|++|. +..+|. .++++++|++|+|++|. +..+|. .+
T Consensus 49 ~l~~l~~l~l~~-------~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKN-------STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESS-------CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCceEEEeeC-------CCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH
Confidence 357899999999 678888775 6789999999999999 888765 89999999999999987 777765 57
Q ss_pred hccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcc
Q 002154 660 GKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAEL 738 (959)
Q Consensus 660 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 738 (959)
+.+++|++|++++| .+..+|.. ++++++|++|++..+... +.....+..+++|+.|.+.+..- .. ..+
T Consensus 120 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l-~~------~~~ 188 (597)
T 3oja_B 120 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRL-TH------VDL 188 (597)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---BCCTTTTTTCTTCCEEECTTSCC-SB------CCG
T ss_pred cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCC---CCChhhhhcCCcCcEEECcCCCC-CC------cCh
Confidence 99999999999999 67788877 489999999988766543 23334577888888888876421 11 124
Q ss_pred cCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecC
Q 002154 739 EKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNW 818 (959)
Q Consensus 739 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 818 (959)
..+++|+.|+++.+. +..+..+++|+.|++++|.... + +.. ..++|+.|+|++
T Consensus 189 ~~l~~L~~L~l~~n~----------------------l~~l~~~~~L~~L~ls~n~l~~--~-~~~--~~~~L~~L~L~~ 241 (597)
T 3oja_B 189 SLIPSLFHANVSYNL----------------------LSTLAIPIAVEELDASHNSINV--V-RGP--VNVELTILKLQH 241 (597)
T ss_dssp GGCTTCSEEECCSSC----------------------CSEEECCTTCSEEECCSSCCCE--E-ECS--CCSCCCEEECCS
T ss_pred hhhhhhhhhhcccCc----------------------cccccCCchhheeeccCCcccc--c-ccc--cCCCCCEEECCC
Confidence 567889999998775 2234556789999999998776 5 333 247999999999
Q ss_pred ccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCc
Q 002154 819 WRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMA 898 (959)
Q Consensus 819 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~ 898 (959)
| .+...+.++.+++|+.|+|+++. +..++...+ ..+++|+.|+|++ +.+..++. ....+|
T Consensus 242 n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~Ls~-N~l~~l~~------~~~~l~ 301 (597)
T 3oja_B 242 N-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPF-----------VKMQRLERLYISN-NRLVALNL------YGQPIP 301 (597)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGG-----------TTCSSCCEEECTT-SCCCEEEC------SSSCCT
T ss_pred C-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHh-----------cCccCCCEEECCC-CCCCCCCc------ccccCC
Confidence 9 55566788999999999999865 555533222 2789999999999 56777665 456799
Q ss_pred ccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 899 RLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 899 ~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
+|+.|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 302 ~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 302 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 9999999997 6778998888899999999999874
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=2.2e-20 Score=214.72 Aligned_cols=332 Identities=14% Similarity=0.135 Sum_probs=226.4
Q ss_pred CcEEEEEeeeccCCC-CccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccc-cc
Q 002154 531 TKILHLMLTLYKGAS-VPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD-IP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~-~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp 608 (959)
.+++++.+..+.... ++. ..+..+++|++|.++++. +....|..|.++++|++|+|++ +.+.. +|
T Consensus 54 ~~L~~L~L~~n~~~~~i~~---~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~ 120 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLTQ-------CNLDGAVL 120 (455)
T ss_dssp TTCCEEECCCCSTTCEECT---TTTTTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECTT-------SCCBTHHH
T ss_pred ccccEEECcCCcccceECc---ccccccccCCEEeCCCCc---cCccChhhccCcccCCEEeCCC-------CCCCcccc
Confidence 678889888776542 211 234589999999999987 4555677799999999999999 44553 44
Q ss_pred cc--ccccCCccEEeeccCCCcccc-chh-hccCCCCcEEecCCCcCCcccchhhhcc--ccCCeeecCCccccccCCcc
Q 002154 609 EN--IEKLLHLKYLSLAHQEAIERL-PEA-LCELYNLERLNVSGCSHLRELPRGIGKL--RKLMYLYNAGTDSLRYLPAG 682 (959)
Q Consensus 609 ~~--i~~l~~L~~L~L~~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~l~~~p~~ 682 (959)
.. ++++++|++|+|++|. +..+ |.. +.++++|++|++++|......|..+..+ .+|++|++++| .+..++..
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~ 198 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEY 198 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTT
T ss_pred CcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchh
Confidence 44 8899999999999999 7766 555 8999999999999988444446667766 78999999888 44444432
Q ss_pred ---------CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCC------hhhhHhhccc--CCCCCC
Q 002154 683 ---------IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSD------AGEARRAELE--KKKNLF 745 (959)
Q Consensus 683 ---------i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~------~~~~~~~~l~--~~~~L~ 745 (959)
+..+++|++|++..+.........+..+...++|+.|.+.+...... ........+. ...+|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 33556777776654432210011111111224455555443211100 0000001111 236899
Q ss_pred ceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcC
Q 002154 746 DLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHL 825 (959)
Q Consensus 746 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 825 (959)
.|+++.+..... .+..+..+++|+.|++++|.... .+|.++..+++|+.|+|++| .+..+
T Consensus 279 ~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~ 338 (455)
T 3v47_A 279 TCDLSKSKIFAL-----------------LKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQN-FLGSI 338 (455)
T ss_dssp EEECCSSCCCEE-----------------CTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred EEEecCcccccc-----------------chhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCC-ccCCc
Confidence 999988763211 23456778899999999998877 65778899999999999999 44544
Q ss_pred C--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCccccee
Q 002154 826 P--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSL 903 (959)
Q Consensus 826 ~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L 903 (959)
+ .++.+++|+.|+++++. +..++...+ ..+++|+.|++++ ++++.++.. .+..+++|+.|
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~-N~l~~~~~~-----~~~~l~~L~~L 400 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNH-IRALGDQSF-----------LGLPNLKELALDT-NQLKSVPDG-----IFDRLTSLQKI 400 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSC-CCEECTTTT-----------TTCTTCCEEECCS-SCCSCCCTT-----TTTTCTTCCEE
T ss_pred ChhHhcCcccCCEEECCCCc-ccccChhhc-----------cccccccEEECCC-CccccCCHh-----HhccCCcccEE
Confidence 3 47889999999999875 666644322 2789999999999 577776642 24678999999
Q ss_pred eeecCCCCcCCC
Q 002154 904 SIVYCPKLKALP 915 (959)
Q Consensus 904 ~i~~C~~L~~lp 915 (959)
++++|+--...|
T Consensus 401 ~l~~N~l~~~~~ 412 (455)
T 3v47_A 401 WLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCcccCCC
Confidence 999986444443
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=4.3e-20 Score=217.96 Aligned_cols=360 Identities=16% Similarity=0.098 Sum_probs=221.3
Q ss_pred EEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccc
Q 002154 533 ILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENI 611 (959)
Q Consensus 533 ~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i 611 (959)
.+++.+..+....+|..+ .+++++|+++++. +....+..|.++++|++|+|++ +.+..+ |..+
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~ 96 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRLSH-------NRIRSLDFHVF 96 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCS-------CCCCEECTTTT
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEECCC-------CCCCcCCHHHh
Confidence 367888777777666543 3799999999987 4555667799999999999999 667666 6779
Q ss_pred cccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCccccccCCccCcCCCCC
Q 002154 612 EKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRL 689 (959)
Q Consensus 612 ~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 689 (959)
+++++|++|+|++|. ++.+|.. .+++|++|++++|. +..+| ..+.++++|++|++++| .+.. ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L 169 (562)
T 3a79_B 97 LFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHL 169 (562)
T ss_dssp TTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTS
T ss_pred CCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-cccc--Cchhhhhhc
Confidence 999999999999999 9999987 89999999999987 77654 78999999999999998 3433 345666666
Q ss_pred --CccCceeecC--ccCCCCCcccccc--------------------------CCCCCCceEeCCCCCCChhhhHhhccc
Q 002154 690 --RSVRKFVVGG--GYDRACSLGSLKK--------------------------LNLLRQCSIDGLGGVSDAGEARRAELE 739 (959)
Q Consensus 690 --~~L~~~~~~~--~~~~~~~~~~L~~--------------------------L~~L~~L~i~~~~~~~~~~~~~~~~l~ 739 (959)
++|++..+.. .. .....+.. +++|+.+++.+..............+.
T Consensus 170 ~L~~L~L~~n~l~~~~---~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 170 HLSCILLDLVSYHIKG---GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp CEEEEEEEESSCCCCS---SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred eeeEEEeecccccccc---cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh
Confidence 7777665544 21 12222222 223333433331100000000000111
Q ss_pred ---------------------------CCCCCCceEEeecCCCCC-Ccccc----ccCCCc------h---hhHHHHhhh
Q 002154 740 ---------------------------KKKNLFDLDLHFGHSRDG-DEEQA----GRRENE------E---DKDERLLEA 778 (959)
Q Consensus 740 ---------------------------~~~~L~~L~l~~~~~~~~-~~~~~----~~~~~~------~---~~~~~~l~~ 778 (959)
...+|+.|+++.+...+. +.... ...... . ......+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 123677777766543211 10000 000000 0 000001111
Q ss_pred CCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCc---cccC
Q 002154 779 LGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGN---EFLG 854 (959)
Q Consensus 779 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~---~~~~ 854 (959)
+.+..+|+.|.++++.... . .....+++|+.|++++|.....+| .++.+++|+.|+++++. ++.++. .+..
T Consensus 327 ~~~~~~L~~L~l~~n~~~~--~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 401 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIH--M--VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKN 401 (562)
T ss_dssp HHHTCCCSEEEEESSCCCC--C--CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTT
T ss_pred hhccCcceEEEccCCCccc--c--cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcC
Confidence 1122468888888877654 2 112578999999999996554444 68899999999998854 554432 1110
Q ss_pred C----------CCCC---CCccccCCCccceeeecccccccccccccccccccccC-cccceeeeecCCCCcCCCcCCCC
Q 002154 855 V----------ESDT---DGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIM-ARLSSLSIVYCPKLKALPDHLLQ 920 (959)
Q Consensus 855 ~----------~~~~---~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~i~~C~~L~~lp~~l~~ 920 (959)
. +... .......+++|+.|+++++ .++.. ....+ ++|+.|++++| .++.+|..+..
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--------~~~~l~~~L~~L~L~~N-~l~~ip~~~~~ 471 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGS--------VFRCLPPKVKVLDLHNN-RIMSIPKDVTH 471 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGG--------GGSSCCTTCSEEECCSS-CCCCCCTTTTS
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcc--------hhhhhcCcCCEEECCCC-cCcccChhhcC
Confidence 0 0000 0001223344444444442 22211 11223 68999999997 78899988889
Q ss_pred CCCcceEEEccCc
Q 002154 921 KSTLQGFGIYHCP 933 (959)
Q Consensus 921 l~~L~~L~l~~c~ 933 (959)
+++|++|++++|.
T Consensus 472 l~~L~~L~L~~N~ 484 (562)
T 3a79_B 472 LQALQELNVASNQ 484 (562)
T ss_dssp SCCCSEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 9999999999985
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-19 Score=198.61 Aligned_cols=290 Identities=18% Similarity=0.213 Sum_probs=152.4
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCcccc-chhhc
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERL-PEALC 636 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~l-p~~i~ 636 (959)
+++.+.+.++.. .. +|..+ .++|++|++++ +.+..+ |..++++++|++|+|++|. ++.+ |..++
T Consensus 34 ~l~~l~~~~~~l---~~-ip~~~--~~~l~~L~l~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGL---KA-VPKEI--SPDTTLLDLQN-------NDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCC---SS-CCSCC--CTTCCEEECCS-------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCCc---cc-cCCCC--CCCCeEEECCC-------CcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 567777776652 22 23222 35777778777 445555 3467777778888887777 6655 56677
Q ss_pred cCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 637 ELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 637 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
++++|++|++++|. +..+|..+. ++|++|++++| .+..+|.. +..+++|++|++..+.... .+.....+..+
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-- 172 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-- 172 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC--
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC--
Confidence 77788888887765 667776655 67777777777 45555543 5667777766655433221 01112222222
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCC
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRG 795 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 795 (959)
+|+.|+++.+..... +..+ .++|+.|++++|..
T Consensus 173 ---------------------------~L~~L~l~~n~l~~l------------------~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 173 ---------------------------KLNYLRISEAKLTGI------------------PKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp ---------------------------CCSCCBCCSSBCSSC------------------CSSS--CSSCSCCBCCSSCC
T ss_pred ---------------------------ccCEEECcCCCCCcc------------------Cccc--cCCCCEEECCCCcC
Confidence 344444443331110 0011 13555555555554
Q ss_pred CCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCcccee
Q 002154 796 RRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRL 873 (959)
Q Consensus 796 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L 873 (959)
.. +++..+..+++|+.|++++| .+..++ .++.+++|+.|+++++. +..++..+. .+++|+.|
T Consensus 206 ~~--~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~------------~l~~L~~L 269 (332)
T 2ft3_A 206 QA--IELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLP------------DLKLLQVV 269 (332)
T ss_dssp CC--CCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGG------------GCTTCCEE
T ss_pred Cc--cCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhh------------cCccCCEE
Confidence 44 33445555556666666655 333332 24555666666665543 444433221 45566666
Q ss_pred eeccccccccccccccccc-ccccCcccceeeeecCCCC--cCCCcCCCCCCCcceEEEccCc
Q 002154 874 RFVCMEELEEWDCGTAIKG-EIIIMARLSSLSIVYCPKL--KALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 874 ~l~~~~~L~~~~~~~~~~~-~~~~~~~L~~L~i~~C~~L--~~lp~~l~~l~~L~~L~l~~c~ 933 (959)
++++ +.++.++.....+. ....+++|+.|++.+++.. ...|..+..+++|+.++++++.
T Consensus 270 ~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ECCC-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6665 34444433211100 0112456667777766533 2334455666777777776653
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=3.8e-20 Score=200.52 Aligned_cols=249 Identities=19% Similarity=0.202 Sum_probs=135.7
Q ss_pred CCccEEEecCCcchhhhh--hhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc-ccchh
Q 002154 558 RGLRSLLVESDEYSWFSE--VLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE-RLPEA 634 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~--~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~-~lp~~ 634 (959)
.+++.|.+.++.. .+ .+|..+.++++|++|+|++ ++.....+|..++++++|++|+|++|. +. .+|..
T Consensus 50 ~~l~~L~L~~~~l---~~~~~~~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNL---PKPYPIPSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCC---SSCEECCGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGG
T ss_pred ceEEEEECCCCCc---cCCcccChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHH
Confidence 3455566655542 22 2344466666666666663 123333556666666666666666666 43 55666
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCC-CCCccCceeecCccCCCCCccccccC
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELI-RLRSVRKFVVGGGYDRACSLGSLKKL 713 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~L~~L 713 (959)
+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+++++ +|+.|++..+... +.....+..+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l 197 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANL 197 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCC
Confidence 66666666666666552225566666666666666666632225555565555 5555554433222 1122223333
Q ss_pred CCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeee
Q 002154 714 NLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEY 793 (959)
Q Consensus 714 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 793 (959)
+ |+.|++.+.. ........+..+++|+.|+++.+.... .+..+..+++|+.|++++|
T Consensus 198 ~-L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 198 N-LAFVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAF------------------DLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp C-CSEEECCSSE----EEECCGGGCCTTSCCSEEECCSSEECC------------------BGGGCCCCTTCCEEECCSS
T ss_pred c-ccEEECcCCc----ccCcCCHHHhcCCCCCEEECCCCceee------------------ecCcccccCCCCEEECcCC
Confidence 3 4444444321 111222344556666666666554210 1122445567777777777
Q ss_pred CCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCcc
Q 002154 794 RGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 794 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 843 (959)
.... .+ |.++..+++|+.|+|++|.....+|..+.+++|+.|++.+++
T Consensus 255 ~l~~-~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYG-TL-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEE-CC-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cccC-cC-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 6653 13 667777777777777777555566666667777777776654
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.2e-19 Score=194.40 Aligned_cols=290 Identities=19% Similarity=0.206 Sum_probs=153.4
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCcccc-chhhc
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERL-PEALC 636 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~l-p~~i~ 636 (959)
+++.+.+.++.. .. +|..+ .+.|++|+|++ +.+..+|. .++++++|++|+|++|. +..+ |..++
T Consensus 32 ~l~~l~~~~~~l---~~-lp~~~--~~~l~~L~L~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGL---EK-VPKDL--PPDTALLDLQN-------NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCC---CS-CCCSC--CTTCCEEECCS-------SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCCc---cc-cCccC--CCCCeEEECCC-------CcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 566676666542 22 22212 25677777777 45555544 56777777777777776 6555 66677
Q ss_pred cCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCc-cCcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 637 ELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPA-GIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 637 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
++++|++|++++|. +..+|..+. ++|++|++++| .+..++. .+.++++|++|++..+.... .+....
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~------- 165 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENG------- 165 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTT-------
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-cCcChh-------
Confidence 77777777777765 666766554 57777777766 3444443 25556666665544332211 011112
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCC
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRG 795 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 795 (959)
.+..+++|+.|+++.+.....+ ..+ .++|+.|++++|..
T Consensus 166 ---------------------~~~~l~~L~~L~l~~n~l~~l~------------------~~~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 166 ---------------------AFQGMKKLSYIRIADTNITTIP------------------QGL--PPSLTELHLDGNKI 204 (330)
T ss_dssp ---------------------GGGGCTTCCEEECCSSCCCSCC------------------SSC--CTTCSEEECTTSCC
T ss_pred ---------------------hccCCCCcCEEECCCCccccCC------------------ccc--cccCCEEECCCCcC
Confidence 2334445555555544321110 111 14666666666655
Q ss_pred CCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCcccee
Q 002154 796 RRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRL 873 (959)
Q Consensus 796 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L 873 (959)
.. ++|.++..+++|+.|++++|. +..++ .++.+++|+.|+++++. +..++..+ ..+++|+.|
T Consensus 205 ~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L 268 (330)
T 1xku_A 205 TK--VDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL------------ADHKYIQVV 268 (330)
T ss_dssp CE--ECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT------------TTCSSCCEE
T ss_pred Cc--cCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhh------------ccCCCcCEE
Confidence 54 335556666666666666663 33332 35566666666666543 44443322 145666666
Q ss_pred eeccccccccccccccccc-ccccCcccceeeeecCCCCc--CCCcCCCCCCCcceEEEccC
Q 002154 874 RFVCMEELEEWDCGTAIKG-EIIIMARLSSLSIVYCPKLK--ALPDHLLQKSTLQGFGIYHC 932 (959)
Q Consensus 874 ~l~~~~~L~~~~~~~~~~~-~~~~~~~L~~L~i~~C~~L~--~lp~~l~~l~~L~~L~l~~c 932 (959)
++++ +.++.++.....+. .....++|+.|++.++|... ..|..+..+++|+.++++++
T Consensus 269 ~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ECCC-CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6666 34554443211100 01124667777777765321 23345566677777777664
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6.4e-19 Score=191.99 Aligned_cols=106 Identities=24% Similarity=0.409 Sum_probs=87.3
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
..++++.|.+.++.. .. +|..+.++++|++|+|++ +.+..+|..++++++|++|+|++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l---~~-lp~~l~~l~~L~~L~L~~-------n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPL---PQ-FPDQAFRLSHLQHMTIDA-------AGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCC---SS-CCSCGGGGTTCSEEEEES-------SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCCc---hh-cChhhhhCCCCCEEECCC-------CCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 357788999988873 33 455577799999999999 6677899999999999999999998 88999999
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhc---------cccCCeeecCCc
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGK---------LRKLMYLYNAGT 673 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~---------L~~L~~L~l~~~ 673 (959)
+++++|++|++++|..+..+|..+.. +++|++|++++|
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 99999999999998888889887764 555555555544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.8e-18 Score=189.48 Aligned_cols=291 Identities=19% Similarity=0.222 Sum_probs=205.0
Q ss_pred EEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccc
Q 002154 533 ILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENI 611 (959)
Q Consensus 533 ~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i 611 (959)
.+.+.+.......+|..+ .++++.|.+.++. +....+..|.++++|++|+|++ +.+..+ |..+
T Consensus 35 l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI------SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVN-------NKISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSCC------CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCS-------SCCCEECGGGS
T ss_pred CCEEECCCCCccccCCCC------CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCC-------CccCccCHhHh
Confidence 445556555555555443 3689999999987 4455566789999999999999 556665 7789
Q ss_pred cccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccc---cCCccCcCCC
Q 002154 612 EKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLR---YLPAGIDELI 687 (959)
Q Consensus 612 ~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~---~~p~~i~~L~ 687 (959)
+++++|++|+|++|. ++.+|..+. ++|++|++++|. +..+|.. +..+++|++|++++|. +. ..|..+..+
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL- 172 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-
Confidence 999999999999998 999998776 899999999987 7777754 8899999999999984 43 345556666
Q ss_pred CCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCC
Q 002154 688 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRREN 767 (959)
Q Consensus 688 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 767 (959)
+|+.|++..+.... .... + .++|+.|+++.+......
T Consensus 173 ~L~~L~l~~n~l~~----l~~~----------------------------~--~~~L~~L~l~~n~i~~~~--------- 209 (332)
T 2ft3_A 173 KLNYLRISEAKLTG----IPKD----------------------------L--PETLNELHLDHNKIQAIE--------- 209 (332)
T ss_dssp CCSCCBCCSSBCSS----CCSS----------------------------S--CSSCSCCBCCSSCCCCCC---------
T ss_pred ccCEEECcCCCCCc----cCcc----------------------------c--cCCCCEEECCCCcCCccC---------
Confidence 77777664432221 0000 0 135666666665422111
Q ss_pred chhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCce
Q 002154 768 EEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVK 846 (959)
Q Consensus 768 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~ 846 (959)
...+..+++|+.|++++|.... +++.++..+++|+.|++++| .+..+| .++.+++|+.|+++++. ++
T Consensus 210 --------~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~ 277 (332)
T 2ft3_A 210 --------LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-IT 277 (332)
T ss_dssp --------TTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CC
T ss_pred --------HHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CC
Confidence 2355667889999999988777 65678889999999999998 555777 47889999999998854 77
Q ss_pred EeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCC
Q 002154 847 RVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCP 909 (959)
Q Consensus 847 ~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~ 909 (959)
.++...+.... ....+++|+.|++++++ +..+.. .+..+..+++|+.|++++|.
T Consensus 278 ~~~~~~~~~~~-----~~~~~~~l~~L~l~~N~-~~~~~~---~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVG-----FGVKRAYYNGISLFNNP-VPYWEV---QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSS-----CCSSSCCBSEEECCSSS-SCGGGS---CGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccc-----cccccccccceEeecCc-cccccc---Ccccccccchhhhhhccccc
Confidence 77665443210 01147889999999965 432222 11246678999999998874
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.8e-18 Score=207.98 Aligned_cols=366 Identities=15% Similarity=0.056 Sum_probs=227.6
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE- 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~- 609 (959)
..+++|.+..+.+..++.. .|..+++|+.|+++++. +..+.+..|.++++|++|+|++ +.+..+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~-------N~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTG-------NPIQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTT-------CCCCEECGG
T ss_pred cCCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccC-------CcCCCCCHH
Confidence 6889999998887755432 24589999999999987 5555667799999999999999 67888875
Q ss_pred cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcc--cchhhhccccCCeeecCCccccccCC-ccCcC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRE--LPRGIGKLRKLMYLYNAGTDSLRYLP-AGIDE 685 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~ 685 (959)
.++++.+|++|+|++|. ++.+|. .++++++|++|++++|. +.. +|..+..+++|++|++++| .+..++ ..+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~ 195 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV 195 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cccccccccccc
Confidence 57999999999999998 888886 58999999999999987 543 5788899999999999987 333332 22222
Q ss_pred CCCCCccC---------------------------c----------------------eee---cCcc------CC----
Q 002154 686 LIRLRSVR---------------------------K----------------------FVV---GGGY------DR---- 703 (959)
Q Consensus 686 L~~L~~L~---------------------------~----------------------~~~---~~~~------~~---- 703 (959)
+.+++.+. . ... .... ..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 21111100 0 000 0000 00
Q ss_pred -----------------------CC-------------------CccccccCCCCCCceEeCCCC--CCCh--h------
Q 002154 704 -----------------------AC-------------------SLGSLKKLNLLRQCSIDGLGG--VSDA--G------ 731 (959)
Q Consensus 704 -----------------------~~-------------------~~~~L~~L~~L~~L~i~~~~~--~~~~--~------ 731 (959)
.. .+..+.....|+.|.+.++.. +... .
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 00 000111122333333332210 0000 0
Q ss_pred -----hhHhhcccCCCCCCceEEeecCCCCCCcc-----------ccccC--------------CC--------chhhHH
Q 002154 732 -----EARRAELEKKKNLFDLDLHFGHSRDGDEE-----------QAGRR--------------EN--------EEDKDE 773 (959)
Q Consensus 732 -----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----------~~~~~--------------~~--------~~~~~~ 773 (959)
.........+++|+.|.++.+........ ..... .. ......
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 00001112345566665554432100000 00000 00 000000
Q ss_pred HHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCc-CC-CCCCcCCCcceeecCccCceEeCcc
Q 002154 774 RLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEH-LP-PLGKLPSLEDLWIQGMKSVKRVGNE 851 (959)
Q Consensus 774 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~l~~i~~~ 851 (959)
.....+...++++.++++++.... ..+..+..+++|+.|++++|..... .| .++.+++|+.|+|++|. ++.++..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~ 512 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 512 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT
T ss_pred cccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH
Confidence 001223445677777777776555 4466677889999999998865544 33 57889999999999875 7777654
Q ss_pred ccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCC-CcCCCCC-CCcceEEE
Q 002154 852 FLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKAL-PDHLLQK-STLQGFGI 929 (959)
Q Consensus 852 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l-p~~l~~l-~~L~~L~l 929 (959)
.+ ..+++|+.|+|++ ++++.++.. .+..+++|+.|++++| .+..+ |..+.++ ++|+.|++
T Consensus 513 ~f-----------~~l~~L~~L~Ls~-N~l~~l~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 513 AF-----------NSLSSLQVLNMSH-NNFFSLDTF-----PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TT-----------TTCTTCCEEECTT-SCCCBCCCG-----GGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred HH-----------cCCCCCCEEECCC-CcCCCCChh-----HHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence 33 2789999999999 467776542 3567899999999996 55555 5567777 68999999
Q ss_pred ccCc
Q 002154 930 YHCP 933 (959)
Q Consensus 930 ~~c~ 933 (959)
+++|
T Consensus 575 ~~Np 578 (635)
T 4g8a_A 575 TQND 578 (635)
T ss_dssp TTCC
T ss_pred eCCC
Confidence 8755
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=3.6e-18 Score=186.95 Aligned_cols=293 Identities=15% Similarity=0.154 Sum_probs=206.7
Q ss_pred cEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-ccc
Q 002154 532 KILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PEN 610 (959)
Q Consensus 532 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~ 610 (959)
..+.+.+.......+|..+ .+.++.|.++++. +....+..|.++++|++|+|++ +.+..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILIN-------NKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCS-------SCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCC-------CcCCeeCHHH
Confidence 3445555555555455432 3689999999987 4454555689999999999999 566666 788
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCcccc--ccCCccCcCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSL--RYLPAGIDELI 687 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l--~~~p~~i~~L~ 687 (959)
++++++|++|+|++|. ++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...+..+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 9999999999999999 999998765 799999999987 766664 5889999999999998431 14455677788
Q ss_pred CCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCC
Q 002154 688 RLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRREN 767 (959)
Q Consensus 688 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 767 (959)
+|+.|.+..+.... ++ ..+ .++|+.|+++.+.....
T Consensus 172 ~L~~L~l~~n~l~~-----------l~---------------------~~~--~~~L~~L~l~~n~l~~~---------- 207 (330)
T 1xku_A 172 KLSYIRIADTNITT-----------IP---------------------QGL--PPSLTELHLDGNKITKV---------- 207 (330)
T ss_dssp TCCEEECCSSCCCS-----------CC---------------------SSC--CTTCSEEECTTSCCCEE----------
T ss_pred CcCEEECCCCcccc-----------CC---------------------ccc--cccCCEEECCCCcCCcc----------
Confidence 88777654332211 00 000 14677777766652111
Q ss_pred chhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCccCce
Q 002154 768 EEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVK 846 (959)
Q Consensus 768 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~ 846 (959)
.+..+..+++|+.|++++|.... .++.++..+++|+.|++++| .+..+| .+..+++|++|+++++. ++
T Consensus 208 -------~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~ 276 (330)
T 1xku_A 208 -------DAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-IS 276 (330)
T ss_dssp -------CTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CC
T ss_pred -------CHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CC
Confidence 12355677899999999988776 64668889999999999999 555776 58889999999998865 77
Q ss_pred EeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecC
Q 002154 847 RVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYC 908 (959)
Q Consensus 847 ~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C 908 (959)
.++...+.... ....++.|+.|++++.+ +..+.. .+..+..+++|+.++++++
T Consensus 277 ~~~~~~f~~~~-----~~~~~~~l~~l~l~~N~-~~~~~i---~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPG-----YNTKKASYSGVSLFSNP-VQYWEI---QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSS-----CCTTSCCCSEEECCSSS-SCGGGS---CGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcc-----cccccccccceEeecCc-cccccc---CccccccccceeEEEeccc
Confidence 77765543211 01246889999999854 444332 1124566888999999875
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.2e-17 Score=190.19 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=109.9
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++.+.+..+....++. .+++|+.|.++++.... ++. ..++|++|++++ +.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~----l~~---~~~~L~~L~L~~-------n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKA----LSD---LPPLLEYLGVSN-------NQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSC----CCS---CCTTCCEEECCS-------SCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCc----ccC---CCCCCCEEECcC-------CCCCCCc-c
Confidence 567777777766654332 24678888887775322 111 115788888887 5566677 4
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
++++++|++|++++|. ++.+|..+ .+|++|++++|. +..+| .+..+++|++|++++| .+..+|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Cccc
Confidence 7788888888888877 77777643 478888888775 66676 5777888888888777 455555432 3566
Q ss_pred ccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecC
Q 002154 691 SVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGH 753 (959)
Q Consensus 691 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 753 (959)
+|++..+... .+..+..+++|+.|++.+..- ... . ....+|+.|+++.+.
T Consensus 219 ~L~l~~n~l~-----~lp~~~~l~~L~~L~l~~N~l-~~l----~---~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 219 SIVAGNNILE-----ELPELQNLPFLTTIYADNNLL-KTL----P---DLPPSLEALNVRDNY 268 (454)
T ss_dssp EEECCSSCCS-----SCCCCTTCTTCCEEECCSSCC-SSC----C---SCCTTCCEEECCSSC
T ss_pred EEECcCCcCC-----cccccCCCCCCCEEECCCCcC-Ccc----c---ccccccCEEECCCCc
Confidence 6655444322 222456667777776665321 110 0 013567777776665
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=6.7e-19 Score=190.70 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=130.7
Q ss_pred CcccEEEccccCccccccccc---cccccccccCCccEEeecc-CCCccccchhhccCCCCcEEecCCCcCCcccchhhh
Q 002154 585 TCLRALKLEVRQPWWCQNFIK---DIPENIEKLLHLKYLSLAH-QEAIERLPEALCELYNLERLNVSGCSHLRELPRGIG 660 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~---~lp~~i~~l~~L~~L~L~~-~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 660 (959)
.+++.|+|++ +.+. .+|..++++++|++|+|++ |.....+|..++++++|++|++++|.....+|..+.
T Consensus 50 ~~l~~L~L~~-------~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSG-------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEEC-------CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCC-------CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 5799999999 4454 6899999999999999995 763448899999999999999999883348899999
Q ss_pred ccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccC
Q 002154 661 KLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEK 740 (959)
Q Consensus 661 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 740 (959)
++++|++|++++|.....+|..++.+++|++|++..+.... .....+..++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~-------------------------- 173 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG---AIPDSYGSFS-------------------------- 173 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE---ECCGGGGCCC--------------------------
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC---cCCHHHhhhh--------------------------
Confidence 99999999999984333677778888888777665433221 1111222222
Q ss_pred CCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc
Q 002154 741 KKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR 820 (959)
Q Consensus 741 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 820 (959)
++|+.|+++.+.... ..+..+..++ |+.|++++|.... ..|..+..+++|+.|+|++|.
T Consensus 174 -~~L~~L~L~~N~l~~-----------------~~~~~~~~l~-L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 174 -KLFTSMTISRNRLTG-----------------KIPPTFANLN-LAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp -TTCCEEECCSSEEEE-----------------ECCGGGGGCC-CSEEECCSSEEEE--CCGGGCCTTSCCSEEECCSSE
T ss_pred -hcCcEEECcCCeeec-----------------cCChHHhCCc-ccEEECcCCcccC--cCCHHHhcCCCCCEEECCCCc
Confidence 144455544433100 0011222222 6666666665543 225556666666666666664
Q ss_pred CCCcCCCCCCcCCCcceeecCcc
Q 002154 821 NCEHLPPLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 821 ~~~~l~~l~~l~~L~~L~l~~~~ 843 (959)
....+|.++.+++|++|+++++.
T Consensus 233 l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 233 LAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp ECCBGGGCCCCTTCCEEECCSSC
T ss_pred eeeecCcccccCCCCEEECcCCc
Confidence 43344455556666666665543
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.1e-17 Score=190.44 Aligned_cols=326 Identities=18% Similarity=0.137 Sum_probs=146.8
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcc-------------cEEEccccCc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCL-------------RALKLEVRQP 597 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~L-------------r~L~L~~~~~ 597 (959)
..++.+.+..+.+..+|..+ ..+++|+.|.++++. +.+.+|..+.++++| +.|++++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i----~~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~--- 80 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEA----ENVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN--- 80 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT---
T ss_pred ccchhhhcccCchhhCChhH----hcccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEecC---
Confidence 55667777776665455443 378888888887765 333345555555543 6677766
Q ss_pred cccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccc
Q 002154 598 WWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLR 677 (959)
Q Consensus 598 ~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 677 (959)
+.+..+|.. .++|++|++++|. ++.+|.. +.+|++|++++|. +..+|... ++|++|++++| .+.
T Consensus 81 ----~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n-~l~ 144 (454)
T 1jl5_A 81 ----LGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNN-QLE 144 (454)
T ss_dssp ----SCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSS-CCS
T ss_pred ----CccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCC-CCC
Confidence 334445442 2456666666555 5555542 2445555555443 33333211 34445555444 333
Q ss_pred cCCccCcCCCCCCccCceeecCccCC---------------CCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCC
Q 002154 678 YLPAGIDELIRLRSVRKFVVGGGYDR---------------ACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKK 742 (959)
Q Consensus 678 ~~p~~i~~L~~L~~L~~~~~~~~~~~---------------~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 742 (959)
.+| .++++++|++|++..+...... -..+..+..+++|+.|.+.+..- ... . ....
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l-~~l----~---~~~~ 215 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-KKL----P---DLPL 215 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSC----C---CCCT
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC-CcC----C---CCcC
Confidence 344 3444444444444332211100 00011233444444444433210 000 0 0012
Q ss_pred CCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCC
Q 002154 743 NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNC 822 (959)
Q Consensus 743 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 822 (959)
+|+.|+++.+... .+ +.+..+++|+.|++++|.... + |.. +++|+.|++++| .+
T Consensus 216 ~L~~L~l~~n~l~------------------~l-p~~~~l~~L~~L~l~~N~l~~--l-~~~---~~~L~~L~l~~N-~l 269 (454)
T 1jl5_A 216 SLESIVAGNNILE------------------EL-PELQNLPFLTTIYADNNLLKT--L-PDL---PPSLEALNVRDN-YL 269 (454)
T ss_dssp TCCEEECCSSCCS------------------SC-CCCTTCTTCCEEECCSSCCSS--C-CSC---CTTCCEEECCSS-CC
T ss_pred cccEEECcCCcCC------------------cc-cccCCCCCCCEEECCCCcCCc--c-ccc---ccccCEEECCCC-cc
Confidence 4444444443311 11 124455666666666665554 4 332 356666666666 33
Q ss_pred CcCCCCCCcCCCcceeecCccCceEeCccccCCCC----CCCCccccCC-CccceeeecccccccccccccccccccccC
Q 002154 823 EHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVES----DTDGSSVIAF-PKLRRLRFVCMEELEEWDCGTAIKGEIIIM 897 (959)
Q Consensus 823 ~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~----~~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 897 (959)
+.+|.. +++|+.|+++++. +..++........ ......+..+ ++|+.|++++ ++++.++. .+
T Consensus 270 ~~l~~~--~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---------~~ 336 (454)
T 1jl5_A 270 TDLPEL--PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPA---------LP 336 (454)
T ss_dssp SCCCCC--CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCC---------CC
T ss_pred cccCcc--cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-Cccccccc---------cC
Confidence 344432 3566666666543 3333211000000 0000011123 4778888877 45555443 36
Q ss_pred cccceeeeecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 898 ARLSSLSIVYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 898 ~~L~~L~i~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
++|+.|++++| .++.+|. .+++|++|++++|+-
T Consensus 337 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 89999999986 6778887 378999999998753
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-17 Score=195.50 Aligned_cols=256 Identities=20% Similarity=0.173 Sum_probs=154.9
Q ss_pred cccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccC
Q 002154 586 CLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKL 665 (959)
Q Consensus 586 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 665 (959)
++++|++++ +.+..+|..+. ++|++|+|++|. ++.+|. .+++|++|+|++|. ++.+|. .+++|
T Consensus 41 ~l~~L~ls~-------n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGE-------SGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCS-------SCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTC
T ss_pred CCcEEEecC-------CCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCC
Confidence 455555555 44555555443 455566665555 555554 34555566665554 555554 44555
Q ss_pred CeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCC
Q 002154 666 MYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLF 745 (959)
Q Consensus 666 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 745 (959)
++|++++| .+..+|. .+++|++|++..+.... +.. .+++|+.|++.+.. +.... ....+|+
T Consensus 104 ~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~-----lp~--~l~~L~~L~Ls~N~-l~~l~-------~~~~~L~ 164 (622)
T 3g06_A 104 LELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTS-----LPV--LPPGLQELSVSDNQ-LASLP-------ALPSELC 164 (622)
T ss_dssp CEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSC-----CCC--CCTTCCEEECCSSC-CSCCC-------CCCTTCC
T ss_pred CEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCc-----CCC--CCCCCCEEECcCCc-CCCcC-------CccCCCC
Confidence 55555555 3444444 33444454443332211 000 12445555554421 11100 1235677
Q ss_pred ceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcC
Q 002154 746 DLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHL 825 (959)
Q Consensus 746 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 825 (959)
.|+++.+.+... + ..+++|+.|++++|.... + |. .+++|+.|++++| .+..+
T Consensus 165 ~L~L~~N~l~~l------------------~---~~~~~L~~L~Ls~N~l~~--l-~~---~~~~L~~L~L~~N-~l~~l 216 (622)
T 3g06_A 165 KLWAYNNQLTSL------------------P---MLPSGLQELSVSDNQLAS--L-PT---LPSELYKLWAYNN-RLTSL 216 (622)
T ss_dssp EEECCSSCCSCC------------------C---CCCTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSS-CCSSC
T ss_pred EEECCCCCCCCC------------------c---ccCCCCcEEECCCCCCCC--C-CC---ccchhhEEECcCC-ccccc
Confidence 777776652111 1 335788899998888776 6 43 3478889999888 55666
Q ss_pred CCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccceeee
Q 002154 826 PPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSI 905 (959)
Q Consensus 826 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i 905 (959)
|.. +++|+.|+++++. ++.++. .+++|+.|+++++ +++.++. .+++|+.|++
T Consensus 217 ~~~--~~~L~~L~Ls~N~-L~~lp~---------------~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~L 268 (622)
T 3g06_A 217 PAL--PSGLKELIVSGNR-LTSLPV---------------LPSELKELMVSGN-RLTSLPM---------LPSGLLSLSV 268 (622)
T ss_dssp CCC--CTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEEC
T ss_pred CCC--CCCCCEEEccCCc-cCcCCC---------------CCCcCcEEECCCC-CCCcCCc---------ccccCcEEeC
Confidence 643 5889999998753 555441 5688999999884 6766552 5688999999
Q ss_pred ecCCCCcCCCcCCCCCCCcceEEEccCcc
Q 002154 906 VYCPKLKALPDHLLQKSTLQGFGIYHCPI 934 (959)
Q Consensus 906 ~~C~~L~~lp~~l~~l~~L~~L~l~~c~~ 934 (959)
++| .++.+|..+.++++|+.|++++|+.
T Consensus 269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 269 YRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 986 6778888888899999999998874
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2.3e-17 Score=198.28 Aligned_cols=128 Identities=23% Similarity=0.240 Sum_probs=109.1
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch-hh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE-AL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~-~i 635 (959)
++++.|+++++. +..+.+..|.++++|++|+|++ +.+..+|. .+++|++|++|+|++|. ++.+|. .+
T Consensus 52 ~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~-------N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSR-------CEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 120 (635)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTT-------CCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGG
T ss_pred cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCC-------CcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHh
Confidence 579999999987 5565667799999999999999 66877754 68999999999999999 999986 57
Q ss_pred ccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccc--cCCccCcCCCCCCccCceeec
Q 002154 636 CELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLR--YLPAGIDELIRLRSVRKFVVG 698 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~ 698 (959)
.+|++|++|++++|. +..+|. .+++|++|++|++++| .+. .+|..++.+++|++|++..+.
T Consensus 121 ~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 999999999999987 888876 4899999999999998 444 356778899999999876543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=183.35 Aligned_cols=251 Identities=17% Similarity=0.169 Sum_probs=161.8
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++|++|.++++. +..+.+..|.++++|++|+|++ +.+..+ |..++++++|++|+|++|. ++.+|.. +
T Consensus 52 ~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTS-------NGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred ccCcEEECCCCc---CcccCHHHhccCCCCCEEECCC-------CccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence 578889888876 4444455678889999999988 556655 4568888999999999888 8888875 7
Q ss_pred ccCCCCcEEecCCCcCCcccch--hhhccccCCeeecCCccccccCC-ccCcCCCCCCccCceeecCccCCCCCcccccc
Q 002154 636 CELYNLERLNVSGCSHLRELPR--GIGKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVVGGGYDRACSLGSLKK 712 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~ 712 (959)
+++++|++|++++|. +..+|. .+..+++|++|++++|..+..++ ..++.+++|++|++..+.... .....+..
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~ 196 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---YEPKSLKS 196 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---ECTTTTTT
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---cCHHHHhc
Confidence 888999999998876 777876 67888999999998875555554 457778888888776554332 22344556
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEee
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDE 792 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 792 (959)
+++|+.|.+.+..- .. .....+..+++|+.|+++.+........ .+........++.+.+.+
T Consensus 197 l~~L~~L~l~~n~l-~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 197 IQNVSHLILHMKQH-IL---LLEIFVDVTSSVECLELRDTDLDTFHFS--------------ELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp CSEEEEEEEECSCS-TT---HHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------CCCCCCEEEEES
T ss_pred cccCCeecCCCCcc-cc---chhhhhhhcccccEEECCCCcccccccc--------------ccccccccchhhcccccc
Confidence 66666676665331 11 1122233456777777776653222110 011122344566666665
Q ss_pred eCCCCC---CCCcChhhcccccceeeecCccCCCcCCC--CCCcCCCcceeecCcc
Q 002154 793 YRGRRN---VVPINWIMSLTNLRDLSLNWWRNCEHLPP--LGKLPSLEDLWIQGMK 843 (959)
Q Consensus 793 ~~~~~~---~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~ 843 (959)
+..... .+ |.++..+++|+.|++++| .++.+|. ++.+++|++|++++++
T Consensus 259 ~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 259 VKITDESLFQV-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CBCCHHHHHHH-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcchhhh-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 543321 13 455666777777777777 4445553 4667777777776654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=184.32 Aligned_cols=273 Identities=17% Similarity=0.173 Sum_probs=156.2
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccc-hh
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLP-EA 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp-~~ 634 (959)
|+.......+++. +.. +|..+ .++|++|++++ +.+..+|. .++++++|++|+|++|. ++.++ ..
T Consensus 30 C~~~~~c~~~~~~---l~~-iP~~~--~~~L~~L~l~~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (353)
T 2z80_A 30 CDRNGICKGSSGS---LNS-IPSGL--TEAVKSLDLSN-------NRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS 95 (353)
T ss_dssp ECTTSEEECCSTT---CSS-CCTTC--CTTCCEEECTT-------SCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT
T ss_pred CCCCeEeeCCCCC---ccc-ccccc--cccCcEEECCC-------CcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh
Confidence 4444445555554 333 23322 24788888887 55666655 67788888888888887 76664 46
Q ss_pred hccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCc--cCcCCCCCCccCceeecCccCCCCCccccc
Q 002154 635 LCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKFVVGGGYDRACSLGSLK 711 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~ 711 (959)
+.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|. .+.++++|++|++..+...
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~----------- 162 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF----------- 162 (353)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC-----------
T ss_pred cCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc-----------
Confidence 7788888888888876 7777765 677888888888877 4555554 3455555555544332100
Q ss_pred cCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEe
Q 002154 712 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVID 791 (959)
Q Consensus 712 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 791 (959)
. ......+..+++|+.|+++.+..... .+..+..+++|+.|+++
T Consensus 163 ----------------~---~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 163 ----------------T---KIQRKDFAGLTFLEELEIDASDLQSY-----------------EPKSLKSIQNVSHLILH 206 (353)
T ss_dssp ----------------C---EECTTTTTTCCEEEEEEEEETTCCEE-----------------CTTTTTTCSEEEEEEEE
T ss_pred ----------------c---ccCHHHccCCCCCCEEECCCCCcCcc-----------------CHHHHhccccCCeecCC
Confidence 0 00012233455666666666542111 12344556667777777
Q ss_pred eeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccc
Q 002154 792 EYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLR 871 (959)
Q Consensus 792 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 871 (959)
++.... +++.++..+++|+.|++++|. ++.++. ..... ....+.++
T Consensus 207 ~n~l~~--~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------------------~~l~~--------~~~~~~l~ 252 (353)
T 2z80_A 207 MKQHIL--LLEIFVDVTSSVECLELRDTD-LDTFHF-----------------------SELST--------GETNSLIK 252 (353)
T ss_dssp CSCSTT--HHHHHHHHTTTEEEEEEESCB-CTTCCC-----------------------C--------------CCCCCC
T ss_pred CCcccc--chhhhhhhcccccEEECCCCc-cccccc-----------------------ccccc--------ccccchhh
Confidence 666544 422233356677777777662 222210 00000 00233444
Q ss_pred eeeecccc----cccccccccccccccccCcccceeeeecCCCCcCCCcCC-CCCCCcceEEEccCc
Q 002154 872 RLRFVCME----ELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPDHL-LQKSTLQGFGIYHCP 933 (959)
Q Consensus 872 ~L~l~~~~----~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~l-~~l~~L~~L~l~~c~ 933 (959)
.+++.++. .+..++. .+..+++|+.|++++| .++.+|..+ ..+++|++|+++++|
T Consensus 253 ~l~L~~~~l~~~~l~~l~~------~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMK------LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEEESCBCCHHHHHHHHH------HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccCcchhhhHH------HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 44444421 1112221 3456788888888886 677888764 678888888888875
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=3.1e-16 Score=183.86 Aligned_cols=130 Identities=22% Similarity=0.190 Sum_probs=93.9
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
..++.+.+..+.+..+|..+ .++|+.|.+.++.. .. +|. .+++|++|+|++ +.+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l------~~~L~~L~L~~N~l---~~-lp~---~l~~L~~L~Ls~-------N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL------PAHITTLVIPDNNL---TS-LPA---LPPELRTLEVSG-------NQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC------CTTCSEEEECSCCC---SC-CCC---CCTTCCEEEECS-------CCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhh------CCCCcEEEecCCCC---CC-CCC---cCCCCCEEEcCC-------CcCCcCCC-
Confidence 34677888777776555543 27888999888863 33 333 567889999988 56777776
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
.+++|++|+|++|. ++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|..+ .+|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~---~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCC---TTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCcc---CCCC
Confidence 67889999998888 888887 67888899998876 7778764 478888988888 566666533 4455
Q ss_pred ccCce
Q 002154 691 SVRKF 695 (959)
Q Consensus 691 ~L~~~ 695 (959)
.|.+.
T Consensus 165 ~L~L~ 169 (622)
T 3g06_A 165 KLWAY 169 (622)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.1e-16 Score=173.17 Aligned_cols=124 Identities=24% Similarity=0.289 Sum_probs=74.4
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc---cccccccCCccEEeeccCCCccccchh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI---PENIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l---p~~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
++++.|.+.++. +..+.+..|.++++|++|+|++ +.+..+ |..+..+++|++|+|++|. +..+|..
T Consensus 28 ~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSS-------NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCS-------SCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred CCCCEEECCCCc---cCccCHhHhhccccCCEEECCC-------CccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 567777777665 3333344466777777777776 334333 4555667777777777776 6677766
Q ss_pred hccCCCCcEEecCCCcCCcccch--hhhccccCCeeecCCccccccCCccCcCCCCCCccC
Q 002154 635 LCELYNLERLNVSGCSHLRELPR--GIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVR 693 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 693 (959)
+.++++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|+
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 7777777777777765 555543 566677777777776632222223344444444443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=9.7e-16 Score=174.64 Aligned_cols=242 Identities=19% Similarity=0.260 Sum_probs=130.3
Q ss_pred ccEEEccccCccccccccccccccccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCcccc-hhhhcccc
Q 002154 587 LRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLRELP-RGIGKLRK 664 (959)
Q Consensus 587 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~ 664 (959)
.+.++..+ ..+..+|..+. .+|++|+|++|. +..++ ..+.++++|++|+|++|. +..++ ..+..+++
T Consensus 45 ~~~v~c~~-------~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVR-------KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCS-------CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSS
T ss_pred CCEEEeCC-------CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCcc
Confidence 34555555 45666666553 567777777776 66554 456677777777777765 55544 45666777
Q ss_pred CCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCC
Q 002154 665 LMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKN 743 (959)
Q Consensus 665 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 743 (959)
|++|++++| .+..+|.+ +..+++|++|++..+.... + ....+..+++
T Consensus 114 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------------~------------~~~~~~~l~~ 161 (440)
T 3zyj_A 114 LNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIES-------------------I------------PSYAFNRIPS 161 (440)
T ss_dssp CCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCE-------------------E------------CTTTTTTCTT
T ss_pred CCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccc-------------------c------------CHHHhhhCcc
Confidence 777777766 44444432 4444444444332111100 0 0001222333
Q ss_pred CCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCC
Q 002154 744 LFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCE 823 (959)
Q Consensus 744 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 823 (959)
|+.|+ +.++..... +++..+..+++|+.|+|++| .++
T Consensus 162 L~~L~-----------------------------------------l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n-~l~ 198 (440)
T 3zyj_A 162 LRRLD-----------------------------------------LGELKRLSY-ISEGAFEGLSNLRYLNLAMC-NLR 198 (440)
T ss_dssp CCEEE-----------------------------------------CCCCTTCCE-ECTTTTTTCSSCCEEECTTS-CCS
T ss_pred cCEeC-----------------------------------------CCCCCCcce-eCcchhhcccccCeecCCCC-cCc
Confidence 44444 443222211 22334556666666666666 455
Q ss_pred cCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCccccee
Q 002154 824 HLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSL 903 (959)
Q Consensus 824 ~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L 903 (959)
.+|.+..+++|+.|+|+++. +..++...+ ..+++|+.|++++ ++++.+... .+..+++|+.|
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L 260 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNH-LSAIRPGSF-----------QGLMHLQKLWMIQ-SQIQVIERN-----AFDNLQSLVEI 260 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSC-CCEECTTTT-----------TTCTTCCEEECTT-CCCCEECTT-----SSTTCTTCCEE
T ss_pred cccccCCCcccCEEECCCCc-cCccChhhh-----------ccCccCCEEECCC-CceeEEChh-----hhcCCCCCCEE
Confidence 66666666677777776643 554433222 2566677777766 344444321 24456777777
Q ss_pred eeecCCCCcCCCc-CCCCCCCcceEEEccCc
Q 002154 904 SIVYCPKLKALPD-HLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 904 ~i~~C~~L~~lp~-~l~~l~~L~~L~l~~c~ 933 (959)
++++| .++.+|. .+..+++|+.|+++++|
T Consensus 261 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 77774 5555554 34556777777776654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=8.9e-16 Score=175.61 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=59.6
Q ss_pred hhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccc
Q 002154 804 WIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEE 883 (959)
Q Consensus 804 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~ 883 (959)
.+..+++|+.|+|++| .+..+|.+..+++|+.|+|+++. +..++...+ ..+++|+.|++++ +.++.
T Consensus 191 ~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~-n~l~~ 256 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSF-----------HGLSSLKKLWVMN-SQVSL 256 (452)
T ss_dssp TTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGGG-----------TTCTTCCEEECTT-SCCCE
T ss_pred hccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCcccc-----------cCccCCCEEEeCC-CcCce
Confidence 3445555666666655 44455556666666666666543 444433222 1456666666666 23444
Q ss_pred cccccccccccccCcccceeeeecCCCCcCCCc-CCCCCCCcceEEEccCc
Q 002154 884 WDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD-HLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 884 ~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~l~~c~ 933 (959)
+... .+..+++|+.|++++| .++.+|. .+..+++|++|+++++|
T Consensus 257 ~~~~-----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERN-----AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTT-----TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECHH-----HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 3321 2445666666666665 5555553 34556666777666654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.7e-16 Score=181.66 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=108.2
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++++.|.++++. +..+.+..|.++++|++|+|++ +.+..++ ..+.++++|++|+|++|. ++.+|.. +
T Consensus 75 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGR-------NSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF 143 (452)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCS-------SCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS
T ss_pred CCccEEECcCCc---CceECHHHcCCCCCCCEEECCC-------CccCCcChhhccCcccCCEEECCCCc-CCccChhhh
Confidence 678899998886 4455566688899999999988 5566554 678889999999999988 8888764 7
Q ss_pred ccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccC
Q 002154 636 CELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKL 713 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L 713 (959)
.++++|++|++++|. +..+|. .+.++++|++|++++|+.+..+|.+ +..+++|+.|++..+.... +..+..+
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~l 217 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLTPL 217 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-----CCCCTTC
T ss_pred cccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-----ccccccc
Confidence 788999999999887 777765 5788899999999887777777654 6677777777665443221 2234444
Q ss_pred CCCCCceEeC
Q 002154 714 NLLRQCSIDG 723 (959)
Q Consensus 714 ~~L~~L~i~~ 723 (959)
++|+.|++.+
T Consensus 218 ~~L~~L~Ls~ 227 (452)
T 3zyi_A 218 VGLEELEMSG 227 (452)
T ss_dssp TTCCEEECTT
T ss_pred ccccEEECcC
Confidence 4455444443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1e-17 Score=181.83 Aligned_cols=253 Identities=13% Similarity=0.097 Sum_probs=135.6
Q ss_pred hhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcC
Q 002154 573 FSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSH 651 (959)
Q Consensus 573 ~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~ 651 (959)
+...+...+..+++|++|+|++ +.+..++ ..++++++|++|+|++|. +..++. +.++++|++|++++|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~-------n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSG-------NPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTT-------SCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-
T ss_pred hhhhHHHHhccCCCCCEEECcC-------CccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-
Confidence 4444455566667788888877 4555553 567778888888888877 666655 7778888888888775
Q ss_pred CcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChh
Q 002154 652 LRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAG 731 (959)
Q Consensus 652 l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~ 731 (959)
+..+| .+++|++|++++| .+..++.. .+++|++|++..+....
T Consensus 92 l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~------------------------------ 134 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITM------------------------------ 134 (317)
T ss_dssp EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCS------------------------------
T ss_pred ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCC------------------------------
Confidence 65554 3477788888777 44444332 24445554443322111
Q ss_pred hhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhC-CCCCCCceEEEeeeCCCCCCCCcChhhcccc
Q 002154 732 EARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEAL-GPPPNLKKLVIDEYRGRRNVVPINWIMSLTN 810 (959)
Q Consensus 732 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~ 810 (959)
.....+..+++|+.|+++.+...... +..+ ..+++|+.|++++|.... + +.. ..+++
T Consensus 135 -~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~~l~~L~~L~L~~N~l~~--~-~~~-~~l~~ 192 (317)
T 3o53_A 135 -LRDLDEGCRSRVQYLDLKLNEIDTVN-----------------FAELAASSDTLEHLNLQYNFIYD--V-KGQ-VVFAK 192 (317)
T ss_dssp -GGGBCTGGGSSEEEEECTTSCCCEEE-----------------GGGGGGGTTTCCEEECTTSCCCE--E-ECC-CCCTT
T ss_pred -ccchhhhccCCCCEEECCCCCCCccc-----------------HHHHhhccCcCCEEECCCCcCcc--c-ccc-ccccc
Confidence 00111223344445555444311000 0111 123456666666655544 3 222 13566
Q ss_pred cceeeecCccCCCcCC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeeccccccc--ccccc
Q 002154 811 LRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELE--EWDCG 887 (959)
Q Consensus 811 L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~--~~~~~ 887 (959)
|+.|+|++| .+..+| .++.+++|+.|+++++. +..++..+. .+++|+.|++++++ +. ..+.
T Consensus 193 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~------------~l~~L~~L~l~~N~-~~~~~~~~- 256 (317)
T 3o53_A 193 LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR------------FSQNLEHFDLRGNG-FHCGTLRD- 256 (317)
T ss_dssp CCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC------------CCTTCCEEECTTCC-CBHHHHHH-
T ss_pred CCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhh------------cCCCCCEEEccCCC-ccCcCHHH-
Confidence 666666666 333332 35556666666666543 555544321 45666677666632 22 1111
Q ss_pred cccccccccCcccceeeeecCCCCcCCC
Q 002154 888 TAIKGEIIIMARLSSLSIVYCPKLKALP 915 (959)
Q Consensus 888 ~~~~~~~~~~~~L~~L~i~~C~~L~~lp 915 (959)
....+++|+.|++.+|+.++..+
T Consensus 257 -----~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 257 -----FFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp -----HHHTCHHHHHHHHHHHHHHHSSS
T ss_pred -----HHhccccceEEECCCchhccCCc
Confidence 24456677777777666555433
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=8.5e-17 Score=173.96 Aligned_cols=222 Identities=19% Similarity=0.133 Sum_probs=139.7
Q ss_pred CcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCcccc---chhhccCCCCcEEecCCCcCCcccchhhh
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERL---PEALCELYNLERLNVSGCSHLRELPRGIG 660 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 660 (959)
++|++|+|++ +.+..+|.. ++++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+.
T Consensus 28 ~~l~~L~L~~-------n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELES-------NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECCS-------SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECCC-------CccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 5788888888 566777765 5788888888888887 6654 5667778888888888876 777887788
Q ss_pred ccccCCeeecCCccccccCCc--cCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcc
Q 002154 661 KLRKLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAEL 738 (959)
Q Consensus 661 ~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l 738 (959)
.+++|++|++++| .+..++. .+..+++|++|++..+.... .....+
T Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~ 146 (306)
T 2z66_A 99 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------------------------AFNGIF 146 (306)
T ss_dssp TCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE-------------------------------CSTTTT
T ss_pred CCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc-------------------------------cchhhc
Confidence 8888888888877 4455443 45555666555443222111 111123
Q ss_pred cCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecC
Q 002154 739 EKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNW 818 (959)
Q Consensus 739 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 818 (959)
..+++|+.|+++.+.... ...+..+..+++|+.|++++|.... ++|.++..+++|+.|++++
T Consensus 147 ~~l~~L~~L~l~~n~l~~----------------~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQE----------------NFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp TTCTTCCEEECTTCEEGG----------------GEECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCEEECCCCcccc----------------ccchhHHhhCcCCCEEECCCCCcCC--cCHHHhcCCCCCCEEECCC
Confidence 344556666665443100 0122345566777777777776665 4466777777888888877
Q ss_pred ccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCC-ccceeeeccc
Q 002154 819 WRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFP-KLRRLRFVCM 878 (959)
Q Consensus 819 ~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp-~L~~L~l~~~ 878 (959)
| .+..++ .++.+++|+.|+++++. +.......+ ..+| +|+.|+++++
T Consensus 209 N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----------~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 209 N-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL-----------QHFPSSLAFLNLTQN 258 (306)
T ss_dssp S-CCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSC-----------CCCCTTCCEEECTTC
T ss_pred C-ccCccChhhccCcccCCEeECCCCC-CcccCHHHH-----------HhhhccCCEEEccCC
Confidence 7 344443 35677788888887754 333322211 1443 7777777774
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=180.12 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=103.2
Q ss_pred EEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccc
Q 002154 535 HLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEK 613 (959)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~ 613 (959)
.+.........+|..+ .++++.|.+.++. +..+.+..|.++++|++|+|++ +.+..++ ..+.+
T Consensus 47 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~-------n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI------STNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSR-------NHIRTIEIGAFNG 110 (440)
T ss_dssp EEECCSCCCSSCCSCC------CTTCSEEECCSCC---CCEECTTTTSSCSSCCEEECCS-------SCCCEECGGGGTT
T ss_pred EEEeCCCCcCcCCCCC------CCCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCC-------CcCCccChhhccC
Confidence 3444444444455443 3678888888876 4444556688888888888888 5565554 56788
Q ss_pred cCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCcc-CcCCCCCC
Q 002154 614 LLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLR 690 (959)
Q Consensus 614 l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~ 690 (959)
+++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++|+.+..++.+ +.++++|+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 8888888888887 887776 57888888888888876 666664 5778888888888887666666653 66677777
Q ss_pred ccCceee
Q 002154 691 SVRKFVV 697 (959)
Q Consensus 691 ~L~~~~~ 697 (959)
.|++..+
T Consensus 189 ~L~L~~n 195 (440)
T 3zyj_A 189 YLNLAMC 195 (440)
T ss_dssp EEECTTS
T ss_pred eecCCCC
Confidence 7765443
No 64
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=1.7e-15 Score=171.43 Aligned_cols=305 Identities=13% Similarity=0.033 Sum_probs=183.4
Q ss_pred ccccccchhHHHHHHHHH-hccCCcCCCCCEEEEE--EcCCCChHHHHHHHHhcCcccc---cccc-eeEEEEeCCCCCH
Q 002154 164 ESEIFGRQKEKNELVNRL-LCESSKEQKGPRIISL--VGMGGIGKTTLAQFAYNNDSVK---RNFQ-KRIWVCVSEPFDE 236 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~ 236 (959)
+..++||++++++|.+++ ...........+.+.| +|++|+||||||+.+++..... ..|. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4321100024567777 9999999999999999842211 0122 3568887777888
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCCc------CCchhHhhhcCCC---C--CC
Q 002154 237 FRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNEDY------GKWEPFYNCLKSS---P--HG 303 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~g 303 (959)
..++..++.+++........+...+...+... +. +++++|||||+|.-.. +.+..+...+... . ..
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDN-LYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH-HHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH-HHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 99999999998633222223345555566555 43 6799999999976321 2233233333221 2 34
Q ss_pred CEEEEeccchhHHHhhc--------c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcC------C
Q 002154 304 SKLLITTRKETVALIMG--------S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCK------G 368 (959)
Q Consensus 304 s~iivTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------G 368 (959)
..+|+||+...+...+. . ...+.+.+++.++++++|...+....... ....+....|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCC
Confidence 45888887654332111 1 22399999999999999976542111101 111345668899999 9
Q ss_pred chhHHHHHHHHhc------CC--CCHHHHHHHHhhhhhhhhhccccc-hHHHHhhhcCCChhhHHHHhHhhccc--CCce
Q 002154 369 LPLAAKTIASLLL------SK--NTEKEWQNILESEIWELEAIEKGL-LAPLLLSYKELPSKVKRCFSYCAVFL--KDYE 437 (959)
Q Consensus 369 ~Plai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~ 437 (959)
.|..+..+..... .. -+.+.+..++... . ...+.-++..||.+.+.++..++.+. .+..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9976655543321 11 1233443333221 1 23455678899999999999888764 2335
Q ss_pred echhHHHHHHHHh--cccccCCCCcHHHHHHHHHHHHHHccCcccccC
Q 002154 438 IRKHKLIELWMAQ--GYLSEKGAKEMEDIGEEYFNILARRSFFQDFDK 483 (959)
Q Consensus 438 i~~~~Li~~W~a~--g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 483 (959)
++...+...+... .... .... .......++++|+..+++.....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEECC
T ss_pred ccHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeecc
Confidence 5555555544221 1111 0111 13446788999999999987543
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.1e-18 Score=200.80 Aligned_cols=363 Identities=17% Similarity=0.098 Sum_probs=217.3
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhh-hhhhHHhccCCcccEEEccccCcccccccccc-cc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFS-EVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD-IP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~-~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp 608 (959)
.+++++.+..+...... ....+..+++|++|.+.++...... ..++..+..+++|++|+|++ +.+.. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-------n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-------NELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-------CCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC-------CcCChHHH
Confidence 56778888776654222 1122347889999999988743211 13566688889999999998 44433 12
Q ss_pred ccc-cccC----CccEEeeccCCCcc-----ccchhhccCCCCcEEecCCCcCCccc-chhhh-----ccccCCeeecCC
Q 002154 609 ENI-EKLL----HLKYLSLAHQEAIE-----RLPEALCELYNLERLNVSGCSHLREL-PRGIG-----KLRKLMYLYNAG 672 (959)
Q Consensus 609 ~~i-~~l~----~L~~L~L~~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~-----~L~~L~~L~l~~ 672 (959)
..+ ..+. +|++|+|++|. +. .+|..+.++++|++|++++|. +... +..+. .+++|++|++++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 222 2344 69999999998 66 568888899999999999887 5432 22222 256799999988
Q ss_pred cccccc-----CCccCcCCCCCCccCceeecCccCCCCCccccc-----cCCCCCCceEeCCCCCCChhhhHhhcccCCC
Q 002154 673 TDSLRY-----LPAGIDELIRLRSVRKFVVGGGYDRACSLGSLK-----KLNLLRQCSIDGLGGVSDAGEARRAELEKKK 742 (959)
Q Consensus 673 ~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~-----~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 742 (959)
| .+.. ++..+..+++|++|++..+.... ..+..+. .+++|+.|++.++.-...........+..++
T Consensus 152 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 152 C-SLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp S-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred C-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 8 3332 34456677888888776544321 1112221 2557888888765322222223445566778
Q ss_pred CCCceEEeecCCCCCCccccccCCCchhhHHHHhhh-CCCCCCCceEEEeeeCCCCCC---CCcChhhcccccceeeecC
Q 002154 743 NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEA-LGPPPNLKKLVIDEYRGRRNV---VPINWIMSLTNLRDLSLNW 818 (959)
Q Consensus 743 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~ 818 (959)
+|+.|+++.+... ......+... ....++|+.|++++|...... + +..+..+++|+.|++++
T Consensus 228 ~L~~L~Ls~n~l~-------------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 228 SLRELALGSNKLG-------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAG 293 (461)
T ss_dssp TCCEEECCSSBCH-------------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTT
T ss_pred CccEEeccCCcCC-------------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCC
Confidence 8999999877521 0111222233 235778999999888654310 2 34455688899999988
Q ss_pred ccCCCcC--CCC-----CCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccc
Q 002154 819 WRNCEHL--PPL-----GKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIK 891 (959)
Q Consensus 819 ~~~~~~l--~~l-----~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~ 891 (959)
|. +... ..+ ...++|+.|++++|. +...+..... ..+..+++|+.|+++++ .+.+........
T Consensus 294 n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 363 (461)
T 1z7x_W 294 NE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNN-RLEDAGVRELCQ 363 (461)
T ss_dssp CC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSS-BCHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCC-ccccccHHHHHH
Confidence 84 2211 011 123688888888875 3222110000 01124578888888875 444322100000
Q ss_pred cccccCcccceeeeecCCCCc-----CCCcCCCCCCCcceEEEccCc
Q 002154 892 GEIIIMARLSSLSIVYCPKLK-----ALPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 892 ~~~~~~~~L~~L~i~~C~~L~-----~lp~~l~~l~~L~~L~l~~c~ 933 (959)
.-....++|++|++++| .++ .+|..+..+++|++|++++|+
T Consensus 364 ~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 00012568888888887 454 566666677888888888875
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=9e-18 Score=182.36 Aligned_cols=263 Identities=14% Similarity=0.055 Sum_probs=180.2
Q ss_pred cccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCcccchhhhccc
Q 002154 586 CLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLRELPRGIGKLR 663 (959)
Q Consensus 586 ~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 663 (959)
.++.++++. +.+...+.. +..+++|++|+|++|. ++.++ ..+.++++|++|++++|. +...+. +..++
T Consensus 11 ~l~i~~ls~-------~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~ 80 (317)
T 3o53_A 11 RYKIEKVTD-------SSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLS 80 (317)
T ss_dssp EEEEESCCT-------TTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCT
T ss_pred ceeEeeccc-------cchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcC
Confidence 455666666 444444333 4467799999999998 77775 589999999999999987 666654 88999
Q ss_pred cCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCC
Q 002154 664 KLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKN 743 (959)
Q Consensus 664 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 743 (959)
+|++|++++| .+..+|. +++|++|.+..+.... + ....+++
T Consensus 81 ~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~~n~l~~-----------------~-----------------~~~~~~~ 121 (317)
T 3o53_A 81 TLRTLDLNNN-YVQELLV----GPSIETLHAANNNISR-----------------V-----------------SCSRGQG 121 (317)
T ss_dssp TCCEEECCSS-EEEEEEE----CTTCCEEECCSSCCSE-----------------E-----------------EECCCSS
T ss_pred CCCEEECcCC-ccccccC----CCCcCEEECCCCccCC-----------------c-----------------CccccCC
Confidence 9999999988 4544432 3555555433221110 0 0112356
Q ss_pred CCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChh-hcccccceeeecCccCC
Q 002154 744 LFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWI-MSLTNLRDLSLNWWRNC 822 (959)
Q Consensus 744 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~ 822 (959)
|+.|+++.+...... ...+..+++|+.|++++|.... +++..+ ..+++|+.|++++| .+
T Consensus 122 L~~L~l~~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N-~l 181 (317)
T 3o53_A 122 KKNIYLANNKITMLR-----------------DLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYN-FI 181 (317)
T ss_dssp CEEEECCSSCCCSGG-----------------GBCTGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTS-CC
T ss_pred CCEEECCCCCCCCcc-----------------chhhhccCCCCEEECCCCCCCc--ccHHHHhhccCcCCEEECCCC-cC
Confidence 778888776532111 1234456788999998887766 434444 47888999999888 56
Q ss_pred CcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccccCcccce
Q 002154 823 EHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSS 902 (959)
Q Consensus 823 ~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~ 902 (959)
+.++....+++|+.|+++++. +..++..+. .+++|+.|+++++ .++.++. .+..+++|+.
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~------------~l~~L~~L~L~~N-~l~~l~~------~~~~l~~L~~ 241 (317)
T 3o53_A 182 YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQ------------SAAGVTWISLRNN-KLVLIEK------ALRFSQNLEH 241 (317)
T ss_dssp CEEECCCCCTTCCEEECCSSC-CCEECGGGG------------GGTTCSEEECTTS-CCCEECT------TCCCCTTCCE
T ss_pred cccccccccccCCEEECCCCc-CCcchhhhc------------ccCcccEEECcCC-cccchhh------HhhcCCCCCE
Confidence 666777778899999998754 667765532 6788999999884 6666654 4567888999
Q ss_pred eeeecCCCC-cCCCcCCCCCCCcceEEEccCcchHH
Q 002154 903 LSIVYCPKL-KALPDHLLQKSTLQGFGIYHCPILEE 937 (959)
Q Consensus 903 L~i~~C~~L-~~lp~~l~~l~~L~~L~l~~c~~l~~ 937 (959)
|++++|+-. ..+|..+..+++|+.|++.+|+.++.
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 999887644 35666677788888888887766543
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.2e-17 Score=198.71 Aligned_cols=136 Identities=19% Similarity=0.090 Sum_probs=58.0
Q ss_pred CCCCccEEEecCCcchhhh-hhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchh
Q 002154 556 GLRGLRSLLVESDEYSWFS-EVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~-~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
.+++|++|.+.++...... ..++..+..+++|+.|+++++... ......++..+.++++|++|+|++|. +..+|..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFE-ILELVGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS--SCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC--ccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH
Confidence 3455555555554321100 012333444555555555541100 00011233334455555555555554 5555555
Q ss_pred hccCCCCcEEecCCCcCC---cccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCce
Q 002154 635 LCELYNLERLNVSGCSHL---RELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKF 695 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 695 (959)
+.++++|++|+++.+... ...+..+..+++|++|.+.++ ....+|..+..+++|++|++.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence 555555555555432211 112233444445555544443 223334444444555555443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=3.3e-16 Score=167.32 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=48.7
Q ss_pred CcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCccc-chhhhc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLREL-PRGIGK 661 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~ 661 (959)
++|++|++++ +.+..+| ..+.++++|++|+|++|. +..+ |..+.++++|++|++++|..+..+ |..+..
T Consensus 32 ~~l~~L~l~~-------n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 32 AASQRIFLHG-------NRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TTCSEEECTT-------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCceEEEeeC-------CcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 4666666666 4455444 345666666666666665 5555 445666666666666666445544 445666
Q ss_pred cccCCeeecCCc
Q 002154 662 LRKLMYLYNAGT 673 (959)
Q Consensus 662 L~~L~~L~l~~~ 673 (959)
+++|++|++++|
T Consensus 104 l~~L~~L~l~~n 115 (285)
T 1ozn_A 104 LGRLHTLHLDRC 115 (285)
T ss_dssp CTTCCEEECTTS
T ss_pred CcCCCEEECCCC
Confidence 666666666665
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=3.8e-17 Score=187.93 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=58.6
Q ss_pred cCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGK 661 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 661 (959)
.+++|++|+|++ +.+..+ |..++++++|++|+|++|. +..++. ++++++|++|+|++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls~-------n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSG-------NPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCS-------SCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cCCCccEEEeeC-------CcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----
Confidence 334888888888 555555 4678888888888888888 776665 8888888888888876 666653
Q ss_pred cccCCeeecCCc
Q 002154 662 LRKLMYLYNAGT 673 (959)
Q Consensus 662 L~~L~~L~l~~~ 673 (959)
.++|++|++++|
T Consensus 98 ~~~L~~L~L~~N 109 (487)
T 3oja_A 98 GPSIETLHAANN 109 (487)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCcCEEECcCC
Confidence 378888888877
No 70
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=6.5e-15 Score=162.59 Aligned_cols=294 Identities=15% Similarity=0.125 Sum_probs=177.0
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCC------CH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPF------DE 236 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~ 236 (959)
.+..|+||++++++|.+++.. + +++.|+|++|+|||||++++++. . . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 456799999999999998852 1 68999999999999999999874 2 1 6777765432 55
Q ss_pred HHHHHHHHHHhCC-----------------CCCcccccHHHHHHHHHHHHhcC-cEEEEEeccCCCCCc-------CCch
Q 002154 237 FRIARAIIEALKP-----------------GSAKELVEFQSLMQHIQEYVVEG-EKFLLVLDDVWNEDY-------GKWE 291 (959)
Q Consensus 237 ~~~~~~i~~~l~~-----------------~~~~~~~~~~~~~~~l~~~~l~~-k~~LlVlDdv~~~~~-------~~~~ 291 (959)
..+++.+...+.. ...........+...+... .+. ++++|||||++..+. ..+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDL-GEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHH-HHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHH-HhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 6667777666542 0001123455566666554 332 389999999976332 1122
Q ss_pred hHhhhcCCCCCCCEEEEeccchhH-HHh----------hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHH
Q 002154 292 PFYNCLKSSPHGSKLLITTRKETV-ALI----------MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIG 359 (959)
Q Consensus 292 ~l~~~l~~~~~gs~iivTtr~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 359 (959)
.+...... ..+.++|+|++.... ... .+. ...+++.||+.+|+.+++...+...+. .. ..+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~---~~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DV---PENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHH
Confidence 22222222 247789999887543 221 011 247999999999999999875422111 11 13456
Q ss_pred HHHHHhcCCchhHHHHHHHHhcCCCCHHHHHH-HHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhcccCCcee
Q 002154 360 WEIVRKCKGLPLAAKTIASLLLSKNTEKEWQN-ILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEI 438 (959)
Q Consensus 360 ~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i 438 (959)
..|++.|+|+|+++..++..+....+...+.. +.+.....+ ...+ -.+.+ + ++..+..+..+|. + .+
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l---~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---MGEL---EELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHH---HHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---HHHH---HHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 68999999999999999876533222222211 111100000 0011 11222 2 7888999988887 2 23
Q ss_pred chhHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHccCcccccCCCCCcccEEE-EChHHHHHH
Q 002154 439 RKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILARRSFFQDFDKGYDGEISTYK-MHDIVHDFA 502 (959)
Q Consensus 439 ~~~~Li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mHdlv~~~~ 502 (959)
+...+.....+. . ++.+ ......+++.|.+.+++.... + .|+ .|++++++.
T Consensus 297 ~~~~l~~~~~~~-~----~~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 297 RWSLIRDYLAVK-G----TKIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp SHHHHHHHHHHT-T----CCCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred CHHHHHHHHHHH-h----CCCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 444444433221 1 0111 345678999999999998652 1 354 467777765
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.9e-17 Score=197.19 Aligned_cols=357 Identities=14% Similarity=0.025 Sum_probs=212.6
Q ss_pred CcEEEEEeeeccCCCCccccccccCC-CCC-ccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKG-LRG-LRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~-~~~-LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 608 (959)
..++++.+..+..... ....+.. +++ |++|.+.++..... ..++....++++|++|+|+++.+. +.....++
T Consensus 112 ~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~--~~~~~~l~ 185 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT-DGLLSIVTHCRKIKTLLMEESSFS--EKDGKWLH 185 (592)
T ss_dssp TTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH-HHHHHHHHHCTTCSEEECTTCEEE--CCCSHHHH
T ss_pred CCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH-HHHHHHHhhCCCCCEEECcccccc--CcchhHHH
Confidence 5677777776644311 1111112 334 88888887652111 124444567888888888882110 00011133
Q ss_pred ccccccCCccEEeeccCCCcc-----ccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCcccc---ccCC
Q 002154 609 ENIEKLLHLKYLSLAHQEAIE-----RLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSL---RYLP 680 (959)
Q Consensus 609 ~~i~~l~~L~~L~L~~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~~p 680 (959)
.....+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+
T Consensus 186 ~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 445678888888888887 54 456666788889999998876 7778888888888998888754222 2233
Q ss_pred ccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCcc
Q 002154 681 AGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEE 760 (959)
Q Consensus 681 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 760 (959)
..+..+++|+.|.+..... ......+..+++|+.|++.++. +. .......+..+++|+.|++..+.
T Consensus 264 ~~l~~~~~L~~L~l~~~~~----~~l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~~------- 329 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGP----NEMPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNVI------- 329 (592)
T ss_dssp SCCCCCTTCCEEEETTCCT----TTGGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-------
T ss_pred HHhhccccccccCccccch----hHHHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCcc-------
Confidence 4456666676665433211 2223335567788888887754 22 22333446778889999987321
Q ss_pred ccccCCCchhhHHHHhhhCCCCCCCceEEEee----------eCCCCCCCCcChhhcccccceeeecCccCCCc--CCCC
Q 002154 761 QAGRRENEEDKDERLLEALGPPPNLKKLVIDE----------YRGRRNVVPINWIMSLTNLRDLSLNWWRNCEH--LPPL 828 (959)
Q Consensus 761 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~----------~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l 828 (959)
....+......+++|+.|++.+ +........+.....+++|++|++..+ .++. +..+
T Consensus 330 ----------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l 398 (592)
T 3ogk_B 330 ----------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESI 398 (592)
T ss_dssp ----------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHH
T ss_pred ----------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHH
Confidence 0122222233467899999994 332220000222346899999999544 4332 2234
Q ss_pred CC-cCCCcceeecC---ccCceEeCcc--ccCCCCCCCCccccCCCccceeeeccccc-ccccccccccccccccCcccc
Q 002154 829 GK-LPSLEDLWIQG---MKSVKRVGNE--FLGVESDTDGSSVIAFPKLRRLRFVCMEE-LEEWDCGTAIKGEIIIMARLS 901 (959)
Q Consensus 829 ~~-l~~L~~L~l~~---~~~l~~i~~~--~~~~~~~~~~~~~~~fp~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~~L~ 901 (959)
+. +++|+.|++.+ |+.++..+.. +. .....+++|+.|+++.|.+ +...... .-...+++|+
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~ 466 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVR 466 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCC
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccce
Confidence 44 88999999984 4444433211 10 0123689999999987654 2221110 0123489999
Q ss_pred eeeeecCCCCcC--CCcCCCCCCCcceEEEccCc
Q 002154 902 SLSIVYCPKLKA--LPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 902 ~L~i~~C~~L~~--lp~~l~~l~~L~~L~l~~c~ 933 (959)
.|++++|. +.. ++..+..+++|++|+|++|+
T Consensus 467 ~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 467 WMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp EEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred EeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 99999985 442 44455678999999999998
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=5.5e-16 Score=165.66 Aligned_cols=127 Identities=24% Similarity=0.358 Sum_probs=99.8
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCcccc-chh
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERL-PEA 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~l-p~~ 634 (959)
.++|+.|.+.++. +..+.+..|..+++|++|+|++ +.+..+ |..++++++|++|+|++|..++.+ |..
T Consensus 31 ~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHS-------NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCS-------SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECCC-------CccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 4689999999987 4444556688999999999998 556666 778999999999999999657777 668
Q ss_pred hccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCce
Q 002154 635 LCELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKF 695 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~ 695 (959)
+.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. ++.+++|++|++.
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECC
Confidence 8999999999999987 6555 566889999999999988 45555543 5556666665543
No 73
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=4e-16 Score=138.30 Aligned_cols=82 Identities=29% Similarity=0.420 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhhcccchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHhhhhcchhhHH
Q 002154 4 AIISPLLEQLISVAVEEPKEQVRLVNGVGKEVEKLTSNLQAIQAVLHDAEKR--QVKEETVRLWLDQLRGTSYDMEDVLG 81 (959)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~~d~ed~ld 81 (959)
|+++++++|+++ ++.+|+.++.||++++++|+++|++|+++|.+|+.+ +.++++++.|+++||+++||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 889999999999999999999999999999999987 56899999999999999999999999
Q ss_pred HHHHHHHH
Q 002154 82 EWNTARLK 89 (959)
Q Consensus 82 ~~~~~~~~ 89 (959)
+|.++...
T Consensus 77 ~f~~~~~~ 84 (115)
T 3qfl_A 77 KFLVQVDG 84 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99988753
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=2.9e-17 Score=195.67 Aligned_cols=366 Identities=14% Similarity=0.073 Sum_probs=184.9
Q ss_pred CcEEEEEeeeccCCCCccccccccC-CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVK-GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 609 (959)
.+++++.+..+.... .....+. .+++|++|.+.++.... ...++..+.++++|++|+|++|.+. +.....++.
T Consensus 105 ~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~i~--~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFS-TDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEE-HHHHHHHHHHCTTCCEEECTTCEEE--CCCGGGGGG
T ss_pred CCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCC-HHHHHHHHHhCCCCCEEeCcCCccC--CcchHHHHH
Confidence 456677776655431 1111121 47899999998874211 1124555668899999999982210 001122334
Q ss_pred cccccCCccEEeeccCC-Cc--cccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccc------cccCC
Q 002154 610 NIEKLLHLKYLSLAHQE-AI--ERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDS------LRYLP 680 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~-~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------l~~~p 680 (959)
....+++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|.+..+.. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 44467789999998875 12 23344445678999999998866777888888888899988765421 12223
Q ss_pred ccCcCCCCCCcc------------------------CceeecCccCCCCCcc-ccccCCCCCCceEeCCCCCCChhhhHh
Q 002154 681 AGIDELIRLRSV------------------------RKFVVGGGYDRACSLG-SLKKLNLLRQCSIDGLGGVSDAGEARR 735 (959)
Q Consensus 681 ~~i~~L~~L~~L------------------------~~~~~~~~~~~~~~~~-~L~~L~~L~~L~i~~~~~~~~~~~~~~ 735 (959)
..+.++++|+.| ++..+... ...+. -+.++++|+.|.+.++ + ......
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~---~~~l~~~~~~~~~L~~L~l~~~--~--~~~~l~ 331 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ---SYDLVKLLCQCPKLQRLWVLDY--I--EDAGLE 331 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC---HHHHHHHHTTCTTCCEEEEEGG--G--HHHHHH
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC---HHHHHHHHhcCCCcCEEeCcCc--c--CHHHHH
Confidence 334444555544 32221110 00011 1223444444444432 0 011111
Q ss_pred hcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChh-hccccccee
Q 002154 736 AELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWI-MSLTNLRDL 814 (959)
Q Consensus 736 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L 814 (959)
.....+++|+.|++..+...+. ..........+......+++|+.|.+.++.... ..+..+ ..+++|+.|
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~-------~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~--~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVM-------EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN--AALITIARNRPNMTRF 402 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCS-------SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH--HHHHHHHHHCTTCCEE
T ss_pred HHHHhCCCCCEEEEecCccccc-------ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH--HHHHHHHhhCCCccee
Confidence 1122344555555532210000 000000001111111123566666554443322 101122 246777777
Q ss_pred eec-----CccCCCcCCC-------CCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeeccccccc
Q 002154 815 SLN-----WWRNCEHLPP-------LGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELE 882 (959)
Q Consensus 815 ~L~-----~~~~~~~l~~-------l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~ 882 (959)
+++ +|..++..|. +..+++|+.|++++ .+...+.... ...+++|+.|+++++. ++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l----------~~~~~~L~~L~L~~~~-i~ 469 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI----------GTYAKKMEMLSVAFAG-DS 469 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH----------HHHCTTCCEEEEESCC-SS
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH----------HHhchhccEeeccCCC-Cc
Confidence 777 3444443331 34466777777754 2221111000 0136788888888754 32
Q ss_pred ccccccccccccccCcccceeeeecCCCCcC-CCcCCCCCCCcceEEEccCcch
Q 002154 883 EWDCGTAIKGEIIIMARLSSLSIVYCPKLKA-LPDHLLQKSTLQGFGIYHCPIL 935 (959)
Q Consensus 883 ~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~-lp~~l~~l~~L~~L~l~~c~~l 935 (959)
+... ..-...+++|++|++++|+.-.. ++.....+++|++|++++|+..
T Consensus 470 ~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 470 DLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 2111 00124589999999999975221 2234455899999999999863
No 75
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=9.4e-14 Score=153.69 Aligned_cols=293 Identities=12% Similarity=0.110 Sum_probs=173.8
Q ss_pred CccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC-----CCHH
Q 002154 163 DESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP-----FDEF 237 (959)
Q Consensus 163 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~ 237 (959)
.+..|+||++++++|.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 72 1 59999999999999999999874 222 2578887642 3445
Q ss_pred HHHHHHHHHhCC-------------CC--------Cc-------ccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc--
Q 002154 238 RIARAIIEALKP-------------GS--------AK-------ELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-- 287 (959)
Q Consensus 238 ~~~~~i~~~l~~-------------~~--------~~-------~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-- 287 (959)
.++..+...+.. .. .. .......+...+.+. .+ ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-SK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-CS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-CC-CCeEEEEECHHHhhccC
Confidence 555555443310 00 00 122344555555443 22 499999999966321
Q ss_pred -CCchhHhhhcCCCCCCCEEEEeccchhHHHhh-----------cc-cceEecCCCChhhhHHHHHHhhccCCCCCCCch
Q 002154 288 -GKWEPFYNCLKSSPHGSKLLITTRKETVALIM-----------GS-TQVISVNELSEMECWSVFESLAFFGKSMQEREN 354 (959)
Q Consensus 288 -~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 354 (959)
..|..+...+.....+.++|+|++.......+ +. ...+++.+|+.+++.+++...+..... ....
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~ 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc
Confidence 23333333332222467899999876532211 11 257899999999999999875421111 1112
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHhcCCCCHHHHHHHHhhhhhhhhhccccchHHHH-hhhc--CCChhhHHHHhHhhc
Q 002154 355 LEKIGWEIVRKCKGLPLAAKTIASLLLSKNTEKEWQNILESEIWELEAIEKGLLAPLL-LSYK--ELPSKVKRCFSYCAV 431 (959)
Q Consensus 355 ~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~~~ 431 (959)
. ..|++.|+|+|+++..++..+....+...|..-.-. .. ...+...+. +.+. .+++..+..+..+|.
T Consensus 232 ~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE---YA---KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH---HH---HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH---HH---HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 2 589999999999999998876543333333211100 00 000111111 2221 678889999999997
Q ss_pred ccCCceechhHHHHHHH-HhcccccCCCCcHHHHHHHHHHHHHHccCcccccCCCCCcccEEE-EChHHHHHH
Q 002154 432 FLKDYEIRKHKLIELWM-AQGYLSEKGAKEMEDIGEEYFNILARRSFFQDFDKGYDGEISTYK-MHDIVHDFA 502 (959)
Q Consensus 432 fp~~~~i~~~~Li~~W~-a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mHdlv~~~~ 502 (959)
+. +...+....- ..|. .........+++.|++.++|..... .|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~~-------~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEGE-------KYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESSS-------CEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecCC-------EEEecCHHHHHhh
Confidence 21 3344332210 1121 0112456789999999999986431 255 578888764
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=2.7e-16 Score=170.20 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=82.5
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccc--ccccccc-------ccCCccEEeeccCC
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIK--DIPENIE-------KLLHLKYLSLAHQE 626 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~ 626 (959)
..++|+.|.+.++.. . .|..+... |++|+|++ +.+. .+|..+. ++++|++|+|++|.
T Consensus 41 ~~~~L~~l~l~~n~l----~-~p~~~~~~--L~~L~L~~-------n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE----A-DLGQFTDI--IKSLSLKR-------LTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEECTTHHHHCCTT----C-CCHHHHHH--HHHCCCCE-------EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred cCCCceeEeeccccc----c-cHHHHHHH--Hhhccccc-------ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 445566666666653 2 23323322 77778877 3342 3555555 68888888888887
Q ss_pred Ccc-ccchhh--ccCCCCcEEecCCCcCCcccchhhhcc-----ccCCeeecCCccccccCC-ccCcCCCCCCccCceee
Q 002154 627 AIE-RLPEAL--CELYNLERLNVSGCSHLRELPRGIGKL-----RKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVV 697 (959)
Q Consensus 627 ~i~-~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~ 697 (959)
+. .+|..+ .++++|++|++++|. +..+|..+..+ ++|++|++++| .+..++ ..++++++|++|++..+
T Consensus 107 -l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 107 -VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp -CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSC
T ss_pred -ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCC
Confidence 55 677765 788888888888876 66667777776 78888888887 444444 45666666666665433
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1.9e-14 Score=149.17 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=47.6
Q ss_pred cccccccccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccC
Q 002154 604 IKDIPENIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYL 679 (959)
Q Consensus 604 ~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~ 679 (959)
+..+|. +. .+|++|++++|. ++.+|. .+.++++|++|++++|..++.+|. .+..+++|++|++++|+.+..+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 566666 33 377788888777 777766 567777788888877654666654 4667777777777763244333
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2.6e-15 Score=172.59 Aligned_cols=215 Identities=16% Similarity=0.129 Sum_probs=149.2
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+++|++|.++++. +....|..|..+++|++|+|++ +.+...+. ++.+++|++|+|++|. ++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSS-------NVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (487)
T ss_dssp TGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTT-------SCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeC-------CCCCCCcc-cccCCCCCEEEecCCc-CCCCCC--
Confidence 55689999999987 4455677799999999999999 55665554 8999999999999998 888775
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccC-CccCcCCCCCCccCceeecCccCCCCCccccccCC
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYL-PAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLN 714 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 714 (959)
.++|++|++++|. +..+|.. .+++|++|++++|. +..+ |..++.+++|+.|++..+.... ..+..+.
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~l~--- 165 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT---VNFAELA--- 165 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCE---EEGGGGG---
T ss_pred --CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCC---cChHHHh---
Confidence 3899999999987 7776643 46899999999984 4444 4557777777777654332221 0111111
Q ss_pred CCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeC
Q 002154 715 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYR 794 (959)
Q Consensus 715 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 794 (959)
..+++|+.|+++.+.+... .....+++|+.|++++|.
T Consensus 166 ------------------------~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 166 ------------------------ASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp ------------------------GGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSC
T ss_pred ------------------------hhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCCCC
Confidence 1345566666665542110 122346778888888887
Q ss_pred CCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCCCcceeecCcc
Q 002154 795 GRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 795 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 843 (959)
... + |..+..+++|+.|+|++| .+..+| .++.+++|+.|++++++
T Consensus 203 l~~--~-~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 203 LAF--M-GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCE--E-CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCC--C-CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 776 6 445777888888888887 444555 46677788888887654
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=5.2e-17 Score=186.88 Aligned_cols=357 Identities=16% Similarity=0.102 Sum_probs=223.1
Q ss_pred CcEEEEEeeeccCCCC-ccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCC----cccEEEccccCccccccccc
Q 002154 531 TKILHLMLTLYKGASV-PIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLT----CLRALKLEVRQPWWCQNFIK 605 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~~~~~~~~~~~~ 605 (959)
.+++.+.+..+.+... ...+...+..+++|++|+++++.... ..+...+..++ +|++|+|++ +.+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~-------n~i~ 98 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQN-------CCLT 98 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTT-------SCCB
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccC-------CCCC
Confidence 4677888887765521 11222334578999999999987422 11233344455 799999999 3343
Q ss_pred -----cccccccccCCccEEeeccCCCcccc-chhhc-----cCCCCcEEecCCCcCCcc-----cchhhhccccCCeee
Q 002154 606 -----DIPENIEKLLHLKYLSLAHQEAIERL-PEALC-----ELYNLERLNVSGCSHLRE-----LPRGIGKLRKLMYLY 669 (959)
Q Consensus 606 -----~lp~~i~~l~~L~~L~L~~~~~i~~l-p~~i~-----~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~ 669 (959)
.+|..+..+++|++|+|++|. +... +..+. .+++|++|++++|. +.. ++..+..+++|++|+
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEE
Confidence 568889999999999999998 6532 22232 36689999999986 543 466778889999999
Q ss_pred cCCccccccC-CccCc-----CCCCCCccCceeecCccCCC-CCccccccCCCCCCceEeCCCCCCChh-hhH-hhcccC
Q 002154 670 NAGTDSLRYL-PAGID-----ELIRLRSVRKFVVGGGYDRA-CSLGSLKKLNLLRQCSIDGLGGVSDAG-EAR-RAELEK 740 (959)
Q Consensus 670 l~~~~~l~~~-p~~i~-----~L~~L~~L~~~~~~~~~~~~-~~~~~L~~L~~L~~L~i~~~~~~~~~~-~~~-~~~l~~ 740 (959)
+++|. +... +..+. .+++|++|++..+....... .....+..+++|+.|++.+.. +.... ... ......
T Consensus 177 L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 177 VSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHP 254 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTST
T ss_pred CcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcC
Confidence 99984 3321 11121 35688888776554332000 023345678889988888742 11110 111 222335
Q ss_pred CCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhh-----cccccceee
Q 002154 741 KKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIM-----SLTNLRDLS 815 (959)
Q Consensus 741 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~-----~l~~L~~L~ 815 (959)
+++|+.|+++.+... ......+...+..+++|+.|++++|.... ..+..+. ..++|+.|+
T Consensus 255 ~~~L~~L~L~~n~l~-------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 255 SSRLRTLWIWECGIT-------------AKGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp TCCCCEEECTTSCCC-------------HHHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEE
T ss_pred CCCceEEECcCCCCC-------------HHHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeE
Confidence 789999999887521 11123345556667899999999987543 1122222 236999999
Q ss_pred ecCccCCCc----CC-CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccc-----cc
Q 002154 816 LNWWRNCEH----LP-PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEE-----WD 885 (959)
Q Consensus 816 L~~~~~~~~----l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~-----~~ 885 (959)
+++|..... ++ .+..+++|+.|+++++. +...+....... .....++|+.|+++++ .++. ++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~------l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG------LGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH------HTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH------HcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 999953221 22 34567999999999864 443322111100 0012679999999996 4542 22
Q ss_pred cccccccccccCcccceeeeecCCCCcC---------CCcCCCCCCCcceEEEccCc
Q 002154 886 CGTAIKGEIIIMARLSSLSIVYCPKLKA---------LPDHLLQKSTLQGFGIYHCP 933 (959)
Q Consensus 886 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~---------lp~~l~~l~~L~~L~l~~c~ 933 (959)
. ....+++|++|++++|+ +.. +|.. ..+|+.|.+.++.
T Consensus 392 ~------~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 392 A------TLLANHSLRELDLSNNC-LGDAGILQLVESVRQP---GCLLEQLVLYDIY 438 (461)
T ss_dssp H------HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTST---TCCCCEEECTTCC
T ss_pred H------HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccC---Ccchhheeecccc
Confidence 2 35568999999999984 432 3322 3467777776654
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=7.7e-15 Score=158.22 Aligned_cols=195 Identities=20% Similarity=0.212 Sum_probs=107.3
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKL 662 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 662 (959)
.+++|+.|++++ +.+..+| .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..+
T Consensus 39 ~l~~L~~L~l~~-------~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFG-------TGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGL 106 (308)
T ss_dssp HHHTCCEEECTT-------SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTC
T ss_pred HcCCcCEEEeeC-------CCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCC
Confidence 344556666665 3444444 35556666666666665 555555 5566666666666554 55544 45556
Q ss_pred ccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCC
Q 002154 663 RKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKK 742 (959)
Q Consensus 663 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 742 (959)
++|++|++++| .+..+|. +..+++|+.|++..+.... +.. +..++
T Consensus 107 ~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~----------------------------l~~l~ 151 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITN-----ISP----------------------------LAGLT 151 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCC-----CGG----------------------------GGGCT
T ss_pred CCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCc-----Ccc----------------------------ccCCC
Confidence 66666666655 3333332 4444444444332221110 001 22334
Q ss_pred CCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCC
Q 002154 743 NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNC 822 (959)
Q Consensus 743 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 822 (959)
+|+.|+++.+.... +..+..+++|+.|++++|.... + +. +..+++|+.|++++| .+
T Consensus 152 ~L~~L~l~~n~l~~-------------------~~~l~~l~~L~~L~l~~n~l~~--~-~~-l~~l~~L~~L~L~~N-~l 207 (308)
T 1h6u_A 152 NLQYLSIGNAQVSD-------------------LTPLANLSKLTTLKADDNKISD--I-SP-LASLPNLIEVHLKNN-QI 207 (308)
T ss_dssp TCCEEECCSSCCCC-------------------CGGGTTCTTCCEEECCSSCCCC--C-GG-GGGCTTCCEEECTTS-CC
T ss_pred CccEEEccCCcCCC-------------------ChhhcCCCCCCEEECCCCccCc--C-hh-hcCCCCCCEEEccCC-cc
Confidence 45555554443110 0114456677788887777665 4 32 667888888888888 55
Q ss_pred CcCCCCCCcCCCcceeecCccCceEeC
Q 002154 823 EHLPPLGKLPSLEDLWIQGMKSVKRVG 849 (959)
Q Consensus 823 ~~l~~l~~l~~L~~L~l~~~~~l~~i~ 849 (959)
..++++..+++|+.|++.+++ +...+
T Consensus 208 ~~~~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 208 SDVSPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CBCGGGTTCTTCCEEEEEEEE-EECCC
T ss_pred CccccccCCCCCCEEEccCCe-eecCC
Confidence 566667888888888887754 44433
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=6.3e-16 Score=167.32 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=71.7
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc--ccchhhc-------cCCCCcEEecCCCcC
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE--RLPEALC-------ELYNLERLNVSGCSH 651 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~ 651 (959)
++..++|+.|++++ +.+ .+|..+... |++|+|++|. +. .+|..+. ++++|++|++++|..
T Consensus 39 ~~~~~~L~~l~l~~-------n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKRV-------DTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHHC-------CTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred EccCCCceeEeecc-------ccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 44556788888887 555 777766655 8888888887 64 4666665 788899999988873
Q ss_pred Ccccchhh--hccccCCeeecCCccccccCCccCcCC-----CCCCccCce
Q 002154 652 LRELPRGI--GKLRKLMYLYNAGTDSLRYLPAGIDEL-----IRLRSVRKF 695 (959)
Q Consensus 652 l~~lp~~i--~~L~~L~~L~l~~~~~l~~~p~~i~~L-----~~L~~L~~~ 695 (959)
...+|..+ ..+++|++|++++| .+..+|..++.+ ++|++|++.
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred cchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEee
Confidence 34677776 78888899988887 455556555544 445554443
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=4.8e-16 Score=185.09 Aligned_cols=334 Identities=15% Similarity=0.087 Sum_probs=182.3
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHh-ccCCcccEEEccccCcccccccccc--ccccccccCCccEEeeccCCCccc--
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLF-DKLTCLRALKLEVRQPWWCQNFIKD--IPENIEKLLHLKYLSLAHQEAIER-- 630 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~-~~~~~Lr~L~L~~~~~~~~~~~~~~--lp~~i~~l~~L~~L~L~~~~~i~~-- 630 (959)
.+++|++|.+.++.. ....+..+ ..+++|++|+|++ |. .+.. ++..+.++++|++|+|++|. +..
T Consensus 103 ~~~~L~~L~L~~~~~---~~~~~~~l~~~~~~L~~L~L~~-----~~-~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVV---TDDCLELIAKSFKNFKVLVLSS-----CE-GFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HCTTCCEEEEESCBC---CHHHHHHHHHHCTTCCEEEEES-----CE-EEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred hCCCCCeEEeeCcEE---cHHHHHHHHHhCCCCcEEeCCC-----cC-CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 678999999998863 22223334 3789999999998 32 2332 55556689999999999997 543
Q ss_pred ---cchhhccCCCCcEEecCCCc-CC--cccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccC--
Q 002154 631 ---LPEALCELYNLERLNVSGCS-HL--RELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYD-- 702 (959)
Q Consensus 631 ---lp~~i~~L~~L~~L~l~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~-- 702 (959)
++.....+++|++|++++|. .+ ..++.-+..+++|++|++++|..+..+|..+.++++|+.|.+..+.....
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence 44444578899999999885 12 22333345679999999999966666777778888898886433211000
Q ss_pred -CCCCcccccc------------------------CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCC
Q 002154 703 -RACSLGSLKK------------------------LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDG 757 (959)
Q Consensus 703 -~~~~~~~L~~------------------------L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 757 (959)
.......+.+ +++|+.|++.++. +. .......+..+++|+.|.++.+.
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~---- 325 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI---- 325 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG----
T ss_pred hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc----
Confidence 0000112222 3444445444433 11 11122223445555555555331
Q ss_pred CccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeC--------CCCCCCCcChhhcccccceeeecCccCCCc--CCC
Q 002154 758 DEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYR--------GRRNVVPINWIMSLTNLRDLSLNWWRNCEH--LPP 827 (959)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~--------~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~ 827 (959)
....+......+++|+.|++.++. .............+++|+.|.+..+ .++. +..
T Consensus 326 -------------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~ 391 (594)
T 2p1m_B 326 -------------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALIT 391 (594)
T ss_dssp -------------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHH
T ss_pred -------------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHH
Confidence 001111111124556666664321 1000000011123566666644333 2221 112
Q ss_pred CC-CcCCCcceeec-----CccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccccccccc-cCccc
Q 002154 828 LG-KLPSLEDLWIQ-----GMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEII-IMARL 900 (959)
Q Consensus 828 l~-~l~~L~~L~l~-----~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~~~L 900 (959)
+. .+|+|+.|++. +|..++..+.... . ......+++|+.|++++ ++++.... ... .+++|
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~-----~~l~~~~~~L~~L~L~~--~l~~~~~~-----~l~~~~~~L 458 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG-F-----GAIVEHCKDLRRLSLSG--LLTDKVFE-----YIGTYAKKM 458 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH-H-----HHHHHHCTTCCEEECCS--SCCHHHHH-----HHHHHCTTC
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhH-H-----HHHHhhCCCccEEeecC--cccHHHHH-----HHHHhchhc
Confidence 22 36777777776 4444443221100 0 00022567888888865 33332110 122 38899
Q ss_pred ceeeeecCCCCcC-CCcCC-CCCCCcceEEEccCcc
Q 002154 901 SSLSIVYCPKLKA-LPDHL-LQKSTLQGFGIYHCPI 934 (959)
Q Consensus 901 ~~L~i~~C~~L~~-lp~~l-~~l~~L~~L~l~~c~~ 934 (959)
+.|++++|. +.. .+..+ ..+++|++|++++|+.
T Consensus 459 ~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 459 EMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 999999985 322 11112 4589999999999986
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=2.5e-14 Score=151.95 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=87.9
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccc-hhh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLP-EAL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp-~~i 635 (959)
++|++|.++++. +....+..|.++++|++|++++ +.+..++. .++++++|++|+|++|. +..+| ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSR-------CEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECTT-------CCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECCC-------CcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 467888887776 3343444577788888888887 45555543 57778888888888887 66665 467
Q ss_pred ccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCcccccc--CCccCcCCCCCCccCceee
Q 002154 636 CELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRY--LPAGIDELIRLRSVRKFVV 697 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~ 697 (959)
.++++|++|++++|. +..++. .+..+++|++|++++| .+.. +|..++++++|++|++..+
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC
Confidence 788888888888776 655554 5777888888888877 3433 4566666666666655433
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.5e-15 Score=164.90 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=119.0
Q ss_pred CccEEEecCCcchhhhhhhhHHhccC--CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc--cchh
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKL--TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER--LPEA 634 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~--lp~~ 634 (959)
.++++++.++... +..+..+ +.+++|++++ +.+...+..+..+++|++|+|++|. +.. +|..
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~-------n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~ 113 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPR-------SFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI 113 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTT-------CEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCC-------ccccccchhhccCCCCCEEEccCCC-cCHHHHHHH
Confidence 3556666655421 2223344 5666666666 4444444445566666666666665 442 5555
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCC
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLN 714 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 714 (959)
+.++++|++|++++|......|..+..+++|++|++++|..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------------------------ 157 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------------------------ 157 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------------------------------------
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH------------------------------------
Confidence 66666666666666652224455566666666666665522211
Q ss_pred CCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeec-CCCCCCccccccCCCchhhHHHHhhhCCCCC-CCceEEEee
Q 002154 715 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFG-HSRDGDEEQAGRRENEEDKDERLLEALGPPP-NLKKLVIDE 792 (959)
Q Consensus 715 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~ 792 (959)
......+..+++|+.|+++++ ... ...+...+..++ +|+.|++++
T Consensus 158 -----------------~~l~~~~~~~~~L~~L~l~~~~~l~----------------~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 158 -----------------FALQTLLSSCSRLDELNLSWCFDFT----------------EKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp -----------------HHHHHHHHHCTTCCEEECCCCTTCC----------------HHHHHHHHHHSCTTCCEEECCS
T ss_pred -----------------HHHHHHHhcCCCCCEEcCCCCCCcC----------------hHHHHHHHHhcccCCCEEEeCC
Confidence 011112223344455555444 200 011222233345 677777766
Q ss_pred eC--CCCCCCCcChhhcccccceeeecCccCCC--cCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCC
Q 002154 793 YR--GRRNVVPINWIMSLTNLRDLSLNWWRNCE--HLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFP 868 (959)
Q Consensus 793 ~~--~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp 868 (959)
|. .....+ |..+..+++|+.|++++|..++ .++.++.+++|++|++++|..+.. ..+. .+..+|
T Consensus 205 ~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~---------~l~~~~ 272 (336)
T 2ast_B 205 YRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLL---------ELGEIP 272 (336)
T ss_dssp CGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGG---------GGGGCT
T ss_pred CcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHH---------HHhcCC
Confidence 63 211113 4555677788888888775333 344667778888888877753221 1110 122578
Q ss_pred ccceeeeccc
Q 002154 869 KLRRLRFVCM 878 (959)
Q Consensus 869 ~L~~L~l~~~ 878 (959)
+|+.|++++|
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 8888888876
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=5e-15 Score=162.41 Aligned_cols=125 Identities=21% Similarity=0.158 Sum_probs=95.9
Q ss_pred cEEEEEeeeccCCCCccccccccCCC--CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccc--c
Q 002154 532 KILHLMLTLYKGASVPIPIWDNVKGL--RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD--I 607 (959)
Q Consensus 532 ~~r~l~~~~~~~~~~~~~~~~~~~~~--~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~--l 607 (959)
..+++.+..+... +.. +..+ ++++.|.+.++.. ....+. +.++++|++|+|++ +.+.. +
T Consensus 48 ~~~~l~l~~~~~~--~~~----~~~~~~~~l~~L~l~~n~l---~~~~~~-~~~~~~L~~L~L~~-------~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDV----TGRLLSQGVIAFRCPRSFM---DQPLAE-HFSPFRVQHMDLSN-------SVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC--HHH----HHHHHHTTCSEEECTTCEE---CSCCCS-CCCCBCCCEEECTT-------CEECHHHH
T ss_pred hheeeccccccCC--HHH----HHhhhhccceEEEcCCccc---cccchh-hccCCCCCEEEccC-------CCcCHHHH
Confidence 3456666655443 211 2245 7899999998763 333344 56789999999999 33442 7
Q ss_pred cccccccCCccEEeeccCCCcc-ccchhhccCCCCcEEecCCCcCCc--ccchhhhccccCCeeecCCcc
Q 002154 608 PENIEKLLHLKYLSLAHQEAIE-RLPEALCELYNLERLNVSGCSHLR--ELPRGIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 608 p~~i~~l~~L~~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~ 674 (959)
|..+..+++|++|+|++|. +. ..|..++++++|++|++++|..+. .+|..+..+++|++|++++|.
T Consensus 111 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp HHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 7888999999999999998 65 678889999999999999996576 377778999999999999883
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=7.6e-14 Score=147.63 Aligned_cols=80 Identities=30% Similarity=0.443 Sum_probs=42.2
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchh-hhc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRG-IGK 661 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 661 (959)
.+++|+.|++++ +.+..++ .++.+++|++|+|++|. +..++ .+.++++|++|++++|. +..+|.. +..
T Consensus 39 ~l~~L~~L~l~~-------~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 39 ELNSIDQIIANN-------SDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp HHTTCCEEECTT-------SCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred cccceeeeeeCC-------CCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 445555555555 3344433 25555566666666555 55543 35555566666665554 4444433 455
Q ss_pred cccCCeeecCCc
Q 002154 662 LRKLMYLYNAGT 673 (959)
Q Consensus 662 L~~L~~L~l~~~ 673 (959)
+++|++|++++|
T Consensus 108 l~~L~~L~L~~n 119 (272)
T 3rfs_A 108 LTNLKELVLVEN 119 (272)
T ss_dssp CTTCCEEECTTS
T ss_pred CcCCCEEECCCC
Confidence 555555555555
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=8.5e-14 Score=144.26 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=47.2
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccc-cccccc-cccccCCccEEeecc-CCCccccch-h
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNF-IKDIPE-NIEKLLHLKYLSLAH-QEAIERLPE-A 634 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~~i~~lp~-~ 634 (959)
+++.|.+.++. +..+.+..|.++++|++|++++ +. +..+|. .+.++++|++|++++ |. ++.+|. .
T Consensus 32 ~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~-------n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIETH---LRTIPSHAFSNLPNISRIYVSI-------DVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDA 100 (239)
T ss_dssp TCCEEEEESCC---CSEECTTTTTTCTTCCEEEEEC-------CSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTS
T ss_pred cccEEEEeCCc---ceEECHHHccCCCCCcEEeCCC-------CCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHH
Confidence 45555555544 2222333344555555555554 32 334432 344555555555554 33 444442 3
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCC---eeecCCc
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLM---YLYNAGT 673 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~---~L~l~~~ 673 (959)
+.++++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 4455555555555544 444443 44444444 4544444
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.7e-13 Score=150.74 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=46.9
Q ss_pred cccccccccccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccC
Q 002154 602 NFIKDIPENIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYL 679 (959)
Q Consensus 602 ~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~ 679 (959)
+.++++|..+ ..+|++|+|++|. ++.+|. .+.++++|++|+|++|..++.+|.. +.+|++|+++...+++.+..+
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 3455555544 2455666666655 555554 3455666666666655533444432 445555554433333344444
Q ss_pred Cc-cCcCCCCCCccCceee
Q 002154 680 PA-GIDELIRLRSVRKFVV 697 (959)
Q Consensus 680 p~-~i~~L~~L~~L~~~~~ 697 (959)
|+ .+..+++|+.|.+..+
T Consensus 96 ~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEE
T ss_pred Cchhhhhcccccccccccc
Confidence 33 2455555555555443
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=4.9e-13 Score=147.06 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=57.2
Q ss_pred cEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCcc-CcCCCCCCccC
Q 002154 618 KYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVR 693 (959)
Q Consensus 618 ~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~ 693 (959)
+.++.+++. ++++|..+ ..+|++|+|++|. ++.+|.+ +.+|++|++|++++|.....+|.+ +.++++|+++.
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 567888887 99999877 4689999999987 9999874 799999999999999555666654 56666666543
No 90
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=7e-12 Score=140.35 Aligned_cols=325 Identities=15% Similarity=0.063 Sum_probs=194.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF-QKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 243 (959)
..++||+++++++.+++........+..+.+.|+|++|+||||||+.+++. ..... ...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999986532101122348999999999999999999874 32221 245688888888888999999
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHh-cCcEEEEEeccCCCCCcCCchhHhhhcCCCC----CCCEEEEeccchhHHHh
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVV-EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP----HGSKLLITTRKETVALI 318 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 318 (959)
+..++............+...+...+. .+++.+|||||++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 999864332223345555555555411 2568999999997665444555555553322 46678888876543322
Q ss_pred hc-------ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhc---------CCchhHHHHHHHHhc-
Q 002154 319 MG-------STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKC---------KGLPLAAKTIASLLL- 381 (959)
Q Consensus 319 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~G~Plai~~~~~~l~- 381 (959)
+. ....+.+.+++.++..+++...+....... .-..+....|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 123699999999999999988763211001 11234556788888 788765544433221
Q ss_pred -----CC--CCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhccc---CCceechhHHHHHHHH--
Q 002154 382 -----SK--NTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFL---KDYEIRKHKLIELWMA-- 449 (959)
Q Consensus 382 -----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~Li~~W~a-- 449 (959)
.. -+.+....+..... .. .+.-.+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~------~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL------FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS------CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh------hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 13333333332210 11 122335678888888887777664 2225666666665533
Q ss_pred --hcccccCCCCcHHHHHHHHHHHHHHccCcccccC----CCCCcccEEE----EChHHHHHHHHHhcc
Q 002154 450 --QGYLSEKGAKEMEDIGEEYFNILARRSFFQDFDK----GYDGEISTYK----MHDIVHDFAQYLCRN 508 (959)
Q Consensus 450 --~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~----~~~~~~~~~~----mHdlv~~~~~~~~~~ 508 (959)
.|. . .. .......++++|...+++..... +..|....++ .|+++..+...+..+
T Consensus 323 ~~~~~-~---~~-~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 323 EEYGE-R---PR-VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHTTC-C---CC-CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHcCC-C---CC-CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 121 1 11 13456788999999999988654 2223333333 345666555554443
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=2.5e-13 Score=144.79 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccch
Q 002154 555 KGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPE 633 (959)
Q Consensus 555 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~ 633 (959)
..+++++++.+.++. +.. +|..+ .+.+++|+|++ +.+..+ |..+.++++|++|+|++|. ++.+|.
T Consensus 7 ~~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~~-------N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLSE-------NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV 72 (290)
T ss_dssp ECSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECTT-------SCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred cccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcCC-------CcCCccCHHHhhcCCCCCEEECCCCc-cCcccC
Confidence 366777777777665 233 22212 25677777777 445554 4567777777777777777 777766
Q ss_pred hhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCc-cCcCCCCCCccC
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPA-GIDELIRLRSVR 693 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~ 693 (959)
. +.+++|++|++++|. +..+|..+..+++|++|++++| .+..+|+ .+..+++|++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp C-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEE
T ss_pred C-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEE
Confidence 4 677777777777765 7777777777777777777776 4445543 244444444443
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=3.7e-13 Score=142.19 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=41.9
Q ss_pred CCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCC--CCCcCCCcceeecCcc
Q 002154 779 LGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPP--LGKLPSLEDLWIQGMK 843 (959)
Q Consensus 779 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~ 843 (959)
+..+++|+.|++++|.... +++..+..+++|+.|+|++| .++.+|. +..+++|+.|++.+++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 3455677777777776665 54555667778888888777 4445553 6677788888887654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=2.4e-13 Score=144.31 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=46.6
Q ss_pred CcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccc-hhhhc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELP-RGIGK 661 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~ 661 (959)
++|++|++++ +.+..++. .++++++|++|+|++|. +..+|. .+.++++|++|++++|. +..++ ..+.+
T Consensus 28 ~~l~~L~ls~-------n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSF-------NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTT-------CCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCC-------CcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 3566666666 44444443 45666666666666665 555543 45666666666666655 44443 44566
Q ss_pred cccCCeeecCCc
Q 002154 662 LRKLMYLYNAGT 673 (959)
Q Consensus 662 L~~L~~L~l~~~ 673 (959)
+++|++|++++|
T Consensus 99 l~~L~~L~l~~n 110 (276)
T 2z62_A 99 LSSLQKLVAVET 110 (276)
T ss_dssp CTTCCEEECTTS
T ss_pred CccccEEECCCC
Confidence 666666666655
No 94
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=7.4e-12 Score=140.07 Aligned_cols=296 Identities=13% Similarity=0.035 Sum_probs=180.7
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccc------cceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRN------FQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~v~~~~~~~~ 238 (959)
..++||+++++++.+++.... .....+.+.|+|++|+||||||+.+++. .... -...+|+++....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 679999999999999885431 1235678999999999999999999984 2221 12356888888888999
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHh--cCcEEEEEeccCCCCCcC--CchhHhhhcC---CC--CCCCEEEEe
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVV--EGEKFLLVLDDVWNEDYG--KWEPFYNCLK---SS--PHGSKLLIT 309 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~---~~--~~gs~iivT 309 (959)
++..++.+++........+...+...+... + .+++.+|||||++..... ..+.+...+. .. ..+..+|+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKR-LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHH-HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHH-HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 999999999743333334455556666655 4 356899999999653221 1122322222 11 345678888
Q ss_pred ccchhHH----Hh-hccc--ceEecCCCChhhhHHHHHHhhcc--CCCCCCCchHHHHHHHHHHhcC---CchhHH-HHH
Q 002154 310 TRKETVA----LI-MGST--QVISVNELSEMECWSVFESLAFF--GKSMQERENLEKIGWEIVRKCK---GLPLAA-KTI 376 (959)
Q Consensus 310 tr~~~v~----~~-~~~~--~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~c~---G~Plai-~~~ 376 (959)
|+..... .. .... ..+.+++++.++..+++...+.. ......+. ..+.|++.++ |.|..+ ..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD----VVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS----HHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH----HHHHHHHHHHHhccCHHHHHHHH
Confidence 8764221 11 1112 47899999999999999887532 11112222 3346777777 999433 333
Q ss_pred HHHhc-----CC--CCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhh-cccCCceechhHHHHHHH
Q 002154 377 ASLLL-----SK--NTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCA-VFLKDYEIRKHKLIELWM 448 (959)
Q Consensus 377 ~~~l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~Li~~W~ 448 (959)
..+.. +. -+.+.+..++.... ...+.-++..|+.+.+..+..++ ++.....+....+.+...
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 22221 11 25666666655421 12355567889988887776666 343223454554444332
Q ss_pred H--hcccccCCCCcHHHHHHHHHHHHHHccCccccc
Q 002154 449 A--QGYLSEKGAKEMEDIGEEYFNILARRSFFQDFD 482 (959)
Q Consensus 449 a--~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 482 (959)
. +.. . ........+..+++.|...+++....
T Consensus 320 ~~~~~~-~--~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTL-G--LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHT-T--CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhc-C--CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1 111 0 11122456788999999999998754
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=4e-13 Score=144.70 Aligned_cols=122 Identities=18% Similarity=0.286 Sum_probs=87.0
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
++++|++|.+.++... . ++ .+..+++|++|+|++ +.+..++. ++.+++|++|+|++|. ++.+| .+
T Consensus 39 ~l~~L~~L~l~~~~i~---~-l~-~~~~l~~L~~L~L~~-------n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT---T-IE-GVQYLNNLIGLELKD-------NQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCC---C-CT-TGGGCTTCCEEECCS-------SCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCCcc---C-ch-hhhccCCCCEEEccC-------CcCCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 4667778887777532 2 23 267778888888887 55666666 7788888888888887 77776 47
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCcee
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFV 696 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~ 696 (959)
.++++|++|++++|. +..+|. +..+++|++|++++| .+..++. ++.+++|+.|++..
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGN 160 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccC
Confidence 788888888888876 666664 777888888888877 4555554 66667777666543
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=6.3e-13 Score=140.43 Aligned_cols=196 Identities=25% Similarity=0.352 Sum_probs=134.2
Q ss_pred CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccchhh-hcc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPRGI-GKL 662 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L 662 (959)
..++.+++++ +.+..+|..+. .+|++|+|++|. +..+|. .+.++++|++|++++|. +..+|..+ ..+
T Consensus 16 ~~~~~l~~~~-------~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSS-------KKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTT-------SCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSC
T ss_pred CCCCEEEccC-------CCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCC
Confidence 3577888887 66777887654 678888888888 777775 67888888888888876 77777654 678
Q ss_pred ccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCC
Q 002154 663 RKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK 741 (959)
Q Consensus 663 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 741 (959)
++|++|++++| .+..+|.. +..+++|++|+
T Consensus 85 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~------------------------------------------------ 115 (270)
T 2o6q_A 85 KNLETLWVTDN-KLQALPIGVFDQLVNLAELR------------------------------------------------ 115 (270)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE------------------------------------------------
T ss_pred CCCCEEECCCC-cCCcCCHhHcccccCCCEEE------------------------------------------------
Confidence 88888888877 44444432 23333333332
Q ss_pred CCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccC
Q 002154 742 KNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRN 821 (959)
Q Consensus 742 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 821 (959)
++.+...... ...+..+++|+.|++++|.... +++..+..+++|+.|+|++| .
T Consensus 116 -------l~~n~l~~~~-----------------~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~ 168 (270)
T 2o6q_A 116 -------LDRNQLKSLP-----------------PRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNN-Q 168 (270)
T ss_dssp -------CCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-C
T ss_pred -------CCCCccCeeC-----------------HHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCC-c
Confidence 2222211000 1134456778888888887766 64566788999999999988 5
Q ss_pred CCcCCC--CCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccc
Q 002154 822 CEHLPP--LGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCME 879 (959)
Q Consensus 822 ~~~l~~--l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 879 (959)
++.++. +..+++|++|+++++. ++.++...+ ..+++|+.|++++++
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAF-----------DSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-----------TTCTTCCEEECCSSC
T ss_pred CcEeChhHhccCCCcCEEECCCCc-CCcCCHHHh-----------ccccCCCEEEecCCC
Confidence 555553 7788999999998864 666655433 267899999998854
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=4.4e-15 Score=166.16 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=70.0
Q ss_pred hhHHhccCCcccEEEccccCcccccccccc-----ccccccccCCccEEeeccCCCcc----ccchhh-------ccCCC
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKD-----IPENIEKLLHLKYLSLAHQEAIE----RLPEAL-------CELYN 640 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~i~----~lp~~i-------~~L~~ 640 (959)
++..+..+++|++|+|++ +.+.. ++..+..+++|++|+|++|. +. .+|..+ .++++
T Consensus 24 l~~~l~~~~~L~~L~L~~-------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSG-------NTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECTT-------SEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECCC-------CCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 455578899999999999 33333 45557789999999999975 43 345444 78999
Q ss_pred CcEEecCCCcCCcc-----cchhhhccccCCeeecCCcc
Q 002154 641 LERLNVSGCSHLRE-----LPRGIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 641 L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 674 (959)
|++|+|++|. +.. +|..+..+++|++|++++|.
T Consensus 96 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 96 LHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred ccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 9999999987 554 78889999999999999983
No 98
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.7e-11 Score=136.91 Aligned_cols=297 Identities=12% Similarity=0.007 Sum_probs=178.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc----cc--cceeEEEEeCCCC-CHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK----RN--FQKRIWVCVSEPF-DEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~ 237 (959)
..++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864321 2345689999999999999999999842111 01 2345788877766 788
Q ss_pred HHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhH-hhhcCCCCCCCEEEEeccchhH
Q 002154 238 RIARAIIEALKPG-SAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPF-YNCLKSSPHGSKLLITTRKETV 315 (959)
Q Consensus 238 ~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v 315 (959)
.++..++..+... ..........+...+... +..++.+|||||++......+..+ ...+.....+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNG-TRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHH-HSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH-hccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8899998888311 112223345556666666 665555999999965432221222 3333322267788989886421
Q ss_pred ----HHhh-cc-cceEecCCCChhhhHHHHHHhhccC-CCCCCCchHHHHHHHHHHhcC---Cchh-HHHHHHHHh--cC
Q 002154 316 ----ALIM-GS-TQVISVNELSEMECWSVFESLAFFG-KSMQERENLEKIGWEIVRKCK---GLPL-AAKTIASLL--LS 382 (959)
Q Consensus 316 ----~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---G~Pl-ai~~~~~~l--~~ 382 (959)
.... .. ...+.+++++.++..++|...+... ......+ +..+.|++.++ |.|. |+..+-.+. ..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 11 2389999999999999999875321 1111222 33446777777 9887 443333322 21
Q ss_pred ---CCCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhcccCCceechhHHHHHHHHhcccccCCCC
Q 002154 383 ---KNTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLKDYEIRKHKLIELWMAQGYLSEKGAK 459 (959)
Q Consensus 383 ---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~ 459 (959)
.-+.+.+..+++... ...+.-+++.|+.+.+..+..++....+-.+. +.+...--..| + ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----KP 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----CC
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----CC
Confidence 225677777665421 13456677889988887777666511101111 11111111122 1 11
Q ss_pred cHHHHHHHHHHHHHHccCcccccC
Q 002154 460 EMEDIGEEYFNILARRSFFQDFDK 483 (959)
Q Consensus 460 ~~e~~~~~~~~~L~~~~ll~~~~~ 483 (959)
.......++++.|..++++.....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 123557788999999999987543
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=2.3e-13 Score=143.90 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=131.1
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchh-
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEA- 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~- 634 (959)
.+++|+.|.+.++... . ++. +..+++|++|++++ +.+..++ .++.+++|++|+|++|. ++.+|..
T Consensus 39 ~l~~L~~L~l~~~~i~---~-~~~-l~~l~~L~~L~l~~-------n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK---S-VQG-IQYLPNVRYLALGG-------NKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSCCC---C-CTT-GGGCTTCCEEECTT-------SCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCCcc---c-ccc-cccCCCCcEEECCC-------CCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 5677888888877632 2 222 67788888888888 5555554 67788888888888887 7777654
Q ss_pred hccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCcccccc
Q 002154 635 LCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKK 712 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~ 712 (959)
+.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|+. ++.+++|++|++..+.... ...
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~----- 174 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS---LPE----- 174 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---CCT-----
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc---cCH-----
Confidence 5788888888888876 6666654 678888888888887 55566554 4666777666554332211 001
Q ss_pred CCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEee
Q 002154 713 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDE 792 (959)
Q Consensus 713 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 792 (959)
..+..+++|+.|+++.+...... ...+..+++|+.|++++
T Consensus 175 -----------------------~~~~~l~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 175 -----------------------GVFDKLTQLKDLRLYQNQLKSVP-----------------DGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp -----------------------TTTTTCTTCCEEECCSSCCSCCC-----------------TTTTTTCTTCCEEECCS
T ss_pred -----------------------HHhcCCccCCEEECCCCcCCccC-----------------HHHHhCCcCCCEEEccC
Confidence 11233455566666555422111 12345567888888887
Q ss_pred eCCCCCCCCcChhhcccccceeeecCccCCCcCC-CCCCcCC
Q 002154 793 YRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP-PLGKLPS 833 (959)
Q Consensus 793 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 833 (959)
|.... .+++|+.|.++.|.....+| .++.++.
T Consensus 215 N~~~~---------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 215 NPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCBCC---------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccc---------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 76443 35677788887775555565 3444443
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=8.3e-13 Score=140.72 Aligned_cols=199 Identities=20% Similarity=0.175 Sum_probs=130.5
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccc-hhhccCCCCcEEecCCCcCCcccchhh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLP-EALCELYNLERLNVSGCSHLRELPRGI 659 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i 659 (959)
+.++++|+.+++++ +.+..+|..+. .+|++|+|++|. +..++ ..+.++++|++|++++|. +..+|..
T Consensus 6 ~~~l~~l~~l~~~~-------~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-------RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTT-------SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-
T ss_pred ccccCCccEEECCC-------CCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-
Confidence 57788999999998 67888887764 689999999998 77764 578999999999999987 8887765
Q ss_pred hccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhccc
Q 002154 660 GKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELE 739 (959)
Q Consensus 660 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~ 739 (959)
..+++|++|++++| .+..+|..+..+++|+.|++..+.... ... ..+.
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~---l~~----------------------------~~~~ 121 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTS---LPL----------------------------GALR 121 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCC---CCS----------------------------STTT
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcc---cCH----------------------------HHHc
Confidence 78899999999988 667777777777777776654332211 000 1122
Q ss_pred CCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCc
Q 002154 740 KKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWW 819 (959)
Q Consensus 740 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 819 (959)
.+++|+.|+++.+.+...+ ...+..+++|+.|++++|.... +++..+..+++|+.|+|++|
T Consensus 122 ~l~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLP-----------------PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp TCTTCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCccC-----------------hhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCC
Confidence 3344555555544321111 1123445566666666666655 53444556666666666666
Q ss_pred cCCCcCC-CCCCcCCCcceeecCcc
Q 002154 820 RNCEHLP-PLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 820 ~~~~~l~-~l~~l~~L~~L~l~~~~ 843 (959)
.++.+| .+..+++|+.|.|.+++
T Consensus 183 -~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 183 -SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -cCCccChhhcccccCCeEEeCCCC
Confidence 344444 34555666666666543
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=139.84 Aligned_cols=228 Identities=17% Similarity=0.090 Sum_probs=136.5
Q ss_pred CCCccEEEecCCcchh--hhhhhhHHhccCCcccEEEccccCccccccccc-cccccc--cccCCccEEeeccCCCccc-
Q 002154 557 LRGLRSLLVESDEYSW--FSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIK-DIPENI--EKLLHLKYLSLAHQEAIER- 630 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~--~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~i--~~l~~L~~L~L~~~~~i~~- 630 (959)
...++.+.+.+..... +.. +.. +..+++|++|++++ +.+. ..|..+ +.+++|++|+|++|. +..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~-------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~ 132 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLED-------LKITGTMPPLPLEATGLALSSLRLRNVS-WATG 132 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEES-------CCCBSCCCCCSSSCCCBCCSSCEEESCC-CSST
T ss_pred hcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEeeC-------CEeccchhhhhhhccCCCCCEEEeeccc-ccch
Confidence 3456777777765321 111 112 23346799999998 4443 456666 889999999999998 654
Q ss_pred cc----hhhccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCcccccc--CCc--cCcCCCCCCccCceeecCcc
Q 002154 631 LP----EALCELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRY--LPA--GIDELIRLRSVRKFVVGGGY 701 (959)
Q Consensus 631 lp----~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p~--~i~~L~~L~~L~~~~~~~~~ 701 (959)
.| ..+..+++|++|++++|. +..+| ..+..+++|++|++++|..... ++. .++.+++|++|.+
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L------- 204 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL------- 204 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC-------
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC-------
Confidence 22 345678999999999987 55554 6788899999999998842211 211 1234444544443
Q ss_pred CCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCC
Q 002154 702 DRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGP 781 (959)
Q Consensus 702 ~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 781 (959)
.+.. +..........+..+++|+.|+++.+......+. .+..+..
T Consensus 205 --------------------s~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------------~~~~~~~ 249 (310)
T 4glp_A 205 --------------------RNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------------SAPRCMW 249 (310)
T ss_dssp --------------------CSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------------CCSSCCC
T ss_pred --------------------CCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchh--------------hHHhccC
Confidence 3211 1111121111234556777777777653222100 0112222
Q ss_pred CCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCCCcCCCCCCcCCCcceeecCcc
Q 002154 782 PPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLPPLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 782 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 843 (959)
+++|+.|++++|.... + |.++. ++|+.|+|++| .++.+|.+..+++|+.|++++++
T Consensus 250 ~~~L~~L~Ls~N~l~~--l-p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ--V-PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSCCCS--C-CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCCCCc--h-hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 3678888888877765 6 55442 67888888877 55566666777777777776643
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=3.6e-14 Score=158.72 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=85.1
Q ss_pred cCCCCCccEEEecCCcchhh-hhhhhHHhccCCcccEEEccccCcccccccccccccc-------ccccCCccEEeeccC
Q 002154 554 VKGLRGLRSLLVESDEYSWF-SEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN-------IEKLLHLKYLSLAHQ 625 (959)
Q Consensus 554 ~~~~~~LrsL~~~~~~~~~~-~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-------i~~l~~L~~L~L~~~ 625 (959)
+..+++|++|.++++..... ...++..+..+++|++|+|+++.. +.....+|.. +..+++|++|+|++|
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~---~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc---CccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 44789999999999874321 112445578899999999998321 1111234444 478999999999999
Q ss_pred CCccc-----cchhhccCCCCcEEecCCCcCCc-----ccchhhhcc---------ccCCeeecCCcc
Q 002154 626 EAIER-----LPEALCELYNLERLNVSGCSHLR-----ELPRGIGKL---------RKLMYLYNAGTD 674 (959)
Q Consensus 626 ~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~ 674 (959)
. +.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|.
T Consensus 105 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 105 A-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp C-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred c-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 8 765 88899999999999999987 54 234445555 899999999883
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=9.5e-13 Score=140.45 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=47.7
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKL 662 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 662 (959)
.+++|+.|++++ +.+..+|. ++.+++|++|+|++|. ++.+|. +.++++|++|++++|. +..+|. +..+
T Consensus 44 ~l~~L~~L~l~~-------~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANN-------SDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHTCCEEECTT-------SCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hcCcccEEEccC-------CCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 445566666666 44555543 5666666666666666 666655 6666666666666655 555443 6666
Q ss_pred ccCCeeecCCc
Q 002154 663 RKLMYLYNAGT 673 (959)
Q Consensus 663 ~~L~~L~l~~~ 673 (959)
++|++|++++|
T Consensus 112 ~~L~~L~L~~n 122 (291)
T 1h6t_A 112 KKLKSLSLEHN 122 (291)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 66666666665
No 104
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.1e-11 Score=136.23 Aligned_cols=297 Identities=13% Similarity=0.098 Sum_probs=175.9
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEeCCCCCHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF---QKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~ 240 (959)
+..|+||+++++++.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864311 234568999999999999999999984 33332 245688876666777888
Q ss_pred HHHHHHhCCCCCcccccHHHHHHHHHHHHhc--CcEEEEEeccCCCCC----cCCchhHhhhcCC-CCCCCEEEEeccch
Q 002154 241 RAIIEALKPGSAKELVEFQSLMQHIQEYVVE--GEKFLLVLDDVWNED----YGKWEPFYNCLKS-SPHGSKLLITTRKE 313 (959)
Q Consensus 241 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~ 313 (959)
..++..++........+...+...+... +. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKA-VRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHH-HHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHH-HhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888777533222223345555555555 33 458999999996521 2233344433322 23355678888765
Q ss_pred hHHHhh-----cc--cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcC---CchhHHHHHHHHh-c-
Q 002154 314 TVALIM-----GS--TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCK---GLPLAAKTIASLL-L- 381 (959)
Q Consensus 314 ~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~Plai~~~~~~l-~- 381 (959)
.....+ .. ...+.+++++.++..+++.+.+..... ...-..++...|++.++ |.|..+..+.... .
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 332211 11 248999999999999999886531110 01112344456777776 9998443333222 1
Q ss_pred ----C--CCCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhhcccC-C-ceechhHHHHHH--HHh-
Q 002154 382 ----S--KNTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCAVFLK-D-YEIRKHKLIELW--MAQ- 450 (959)
Q Consensus 382 ----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~Li~~W--~a~- 450 (959)
. .-+.+.+..++.... ...+.-++..+|...+..+..++.+.+ + ..+....+.+.. +++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 124555655554321 124555677888888877766664322 1 123343333322 111
Q ss_pred -cccccCCCCcHHHHHHHHHHHHHHccCccccc
Q 002154 451 -GYLSEKGAKEMEDIGEEYFNILARRSFFQDFD 482 (959)
Q Consensus 451 -g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 482 (959)
| +. .........+++.|...+++....
T Consensus 322 ~g-~~----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 322 LG-VE----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HT-CC----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred cC-CC----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 2 11 112245677899999999998643
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=9.7e-13 Score=154.15 Aligned_cols=169 Identities=21% Similarity=0.224 Sum_probs=88.7
Q ss_pred ccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhc
Q 002154 582 DKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGK 661 (959)
Q Consensus 582 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 661 (959)
..+++|+.|++++ +.+..+| .++.|++|++|+|++|. +..+|. +.++++|+.|+|++|. +..+| .+..
T Consensus 40 ~~L~~L~~L~l~~-------n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIANN-------SDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCTT-------CCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hcCCCCCEEECcC-------CCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 3445555556655 3344444 35556666666666655 555554 5556666666666554 44444 4555
Q ss_pred cccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCC
Q 002154 662 LRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK 741 (959)
Q Consensus 662 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 741 (959)
|++|++|++++| .+..++ .+..|++|+.| .+.++.- ... ..+..+
T Consensus 108 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L---------------------------~Ls~N~l-~~l-----~~l~~l 152 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDIN-GLVHLPQLESL---------------------------YLGNNKI-TDI-----TVLSRL 152 (605)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCSEE---------------------------ECCSSCC-CCC-----GGGGSC
T ss_pred CCCCCEEEecCC-CCCCCc-cccCCCccCEE---------------------------ECCCCcc-CCc-----hhhccc
Confidence 566666666555 233221 23333333333 3322110 000 123445
Q ss_pred CCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCcc
Q 002154 742 KNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWR 820 (959)
Q Consensus 742 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 820 (959)
++|+.|+|+.+.+... . .+..+++|+.|+|++|.... + + .+..+++|+.|+|++|.
T Consensus 153 ~~L~~L~Ls~N~l~~~------------------~-~l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDI------------------V-PLAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSSCCCCC------------------G-GGTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCcCCCc------------------h-hhccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCc
Confidence 5666666665542111 1 14556777777777777665 3 3 46677778888887774
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=1.2e-11 Score=128.87 Aligned_cols=144 Identities=26% Similarity=0.340 Sum_probs=96.9
Q ss_pred EEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccc
Q 002154 535 HLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEK 613 (959)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~ 613 (959)
++.+.......+|..+ .+.++.|.+.++. +....+..|.++++|++|+|++ +.+..++ ..+.+
T Consensus 18 ~l~~~~~~l~~~p~~~------~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~ 81 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI------PADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDY-------NQLQTLSAGVFDD 81 (251)
T ss_dssp EEECTTCCCSSCCSCC------CTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTT-------SCCCCCCTTTTTT
T ss_pred EEecCCCCccccCCCC------CCCCCEEEccCCC---cCccCHhHhcCcccCCEEECCC-------CcCCccCHhHhcc
Confidence 3444444444444433 2577888887776 3444455577788888888887 5555554 34677
Q ss_pred cCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCc-cCcCCCCCC
Q 002154 614 LLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPA-GIDELIRLR 690 (959)
Q Consensus 614 l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~ 690 (959)
+++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|. .++.+++|+
T Consensus 82 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 82 LTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCC
Confidence 8888888888887 777764 45778888888888875 7677655 477888888888877 5566665 366677777
Q ss_pred ccCceee
Q 002154 691 SVRKFVV 697 (959)
Q Consensus 691 ~L~~~~~ 697 (959)
+|++..+
T Consensus 159 ~L~L~~N 165 (251)
T 3m19_A 159 TLSLSTN 165 (251)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7665544
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=133.83 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh--ccCCCCcEEecCCCcCCcccc----hh
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL--CELYNLERLNVSGCSHLRELP----RG 658 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i--~~L~~L~~L~l~~~~~l~~lp----~~ 658 (959)
..++.|.+.++..- ...+..++. ...+.+|++|++++|......|..+ .++++|++|++++|......| ..
T Consensus 64 ~~l~~l~l~~~~~~--~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVP--AQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCB--HHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCC--HHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 35677787772210 011122222 2245679999999998334566666 889999999999887333333 33
Q ss_pred hhccccCCeeecCCccccccCC-ccCcCCCCCCcc
Q 002154 659 IGKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSV 692 (959)
Q Consensus 659 i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L 692 (959)
+..+++|++|++++| .+..+| ..++.+++|++|
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEE
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEE
Confidence 457888999998887 333333 233344444433
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.6e-11 Score=142.10 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=65.4
Q ss_pred CcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcccc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRK 664 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 664 (959)
.+|++|+|++ +.+..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. ++.+|. +.+ +
T Consensus 59 ~~L~~L~Ls~-------n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~ 121 (571)
T 3cvr_A 59 NQFSELQLNR-------LNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--S 121 (571)
T ss_dssp TTCSEEECCS-------SCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--T
T ss_pred CCccEEEeCC-------CCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--C
Confidence 3788888888 55677877663 788888888888 88888 457888888888876 777887 654 8
Q ss_pred CCeeecCCccccccCCccCcCCCCCCccCc
Q 002154 665 LMYLYNAGTDSLRYLPAGIDELIRLRSVRK 694 (959)
Q Consensus 665 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 694 (959)
|++|++++| .+..+|. .+++|+.|++
T Consensus 122 L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 122 LKHLDVDNN-QLTMLPE---LPALLEYINA 147 (571)
T ss_dssp CCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred CCEEECCCC-cCCCCCC---cCccccEEeC
Confidence 888888887 4555655 3455555543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.3e-11 Score=129.70 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=82.2
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+++|+.|.+.++... . ++. +..+++|++|+|++ +.+..++. ++++++|++|+|++|. ++.+|. +
T Consensus 44 ~l~~L~~L~l~~~~i~---~-~~~-~~~l~~L~~L~L~~-------n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l 108 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK---S-VQG-IQYLPNVTKLFLNG-------NKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-L 108 (291)
T ss_dssp HHHTCCEEECTTSCCC---C-CTT-GGGCTTCCEEECCS-------SCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-G
T ss_pred hcCcccEEEccCCCcc---c-Chh-HhcCCCCCEEEccC-------CccCCCcc-cccCCCCCEEECCCCc-CCCChh-h
Confidence 3444555555554421 1 121 44455555555555 33444443 5555555555555555 554443 5
Q ss_pred ccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCC
Q 002154 636 CELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNL 715 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 715 (959)
.++++|++|++++|. +..++ .+..+++|++|++++| .+..+ ..++.+++|+.|++..+.... +..+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~-----~~~l~~l~~ 179 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD-----IVPLAGLTK 179 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCC-----CGGGTTCTT
T ss_pred ccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCcccc-----chhhcCCCc
Confidence 555555555555554 44442 3455555555555555 33333 334455555555444332221 111445555
Q ss_pred CCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecC
Q 002154 716 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGH 753 (959)
Q Consensus 716 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 753 (959)
|+.|++.+.. +... ..+..+++|+.|+++.+.
T Consensus 180 L~~L~L~~N~-i~~l-----~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKNH-ISDL-----RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSSC-CCBC-----GGGTTCTTCSEEEEEEEE
T ss_pred cCEEECCCCc-CCCC-----hhhccCCCCCEEECcCCc
Confidence 5555555431 1111 125567788888888775
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=2.3e-11 Score=121.58 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=77.2
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccc-ccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD-IPE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp~ 609 (959)
.+++++.+..+.+..++ . +..+++|++|.+.++.. .. ++ .+..+++|++|++++ +.+.. .|.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~----l~~l~~L~~L~l~~n~~---~~-~~-~l~~l~~L~~L~l~~-------n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-G----IEYAHNIKDLTINNIHA---TN-YN-PISGLSNLERLRIMG-------KDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-T----GGGCTTCSEEEEESCCC---SC-CG-GGTTCTTCCEEEEEC-------TTCBGGGSC
T ss_pred CCccEEeccCCCccChH-H----HhcCCCCCEEEccCCCC---Cc-ch-hhhcCCCCCEEEeEC-------CccCcccCh
Confidence 34555555555544333 2 22556666666666532 11 12 255566666666665 33332 445
Q ss_pred cccccCCccEEeeccCCCcc-ccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCC
Q 002154 610 NIEKLLHLKYLSLAHQEAIE-RLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIR 688 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 688 (959)
.++.+++|++|++++|. +. ..|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSS
T ss_pred hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCC
Confidence 56666666666666665 44 345556666666666666654455554 4566666666666665 344443 4455555
Q ss_pred CCccCce
Q 002154 689 LRSVRKF 695 (959)
Q Consensus 689 L~~L~~~ 695 (959)
|++|++.
T Consensus 183 L~~L~l~ 189 (197)
T 4ezg_A 183 LNQLYAF 189 (197)
T ss_dssp CCEEEEC
T ss_pred CCEEEee
Confidence 5555443
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=5.2e-11 Score=123.76 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=120.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
..++||+..++.+.+++.... ..+.+.|+|++|+||||||+.+++... ..+.... ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~----~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA----TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS----SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC----CCCcccHH-HHHHh
Confidence 469999999999999986432 345889999999999999999987422 1110000 00000000 01111
Q ss_pred HHhCCC----CCcccccHHHHHHHHHHH---HhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HH
Q 002154 245 EALKPG----SAKELVEFQSLMQHIQEY---VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VA 316 (959)
Q Consensus 245 ~~l~~~----~~~~~~~~~~~~~~l~~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 316 (959)
...... ........+.+...+... ...+++.+||+||++..+...+..+...+.....+..+|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000000 000001112222222111 0235689999999977655667777777766666788888887643 11
Q ss_pred H-hhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 317 L-IMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 317 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
. .......+.+.+++.++..+++...+........ .+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1223468999999999999999987753221111 3445689999999999988776544
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=4e-12 Score=140.50 Aligned_cols=238 Identities=13% Similarity=0.102 Sum_probs=120.2
Q ss_pred CCCCccEEEecCCcchhhhhhhh----HHhccCC-cccEEEccccCccccccccccc-ccccccc-----CCccEEeecc
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLP----QLFDKLT-CLRALKLEVRQPWWCQNFIKDI-PENIEKL-----LHLKYLSLAH 624 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~----~~~~~~~-~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l-----~~L~~L~L~~ 624 (959)
..++|+.|+++++.. ....+ ..+.+++ +|++|+|++ +.+... +..+..+ ++|++|+|++
T Consensus 20 ~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~-------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 20 IPHGVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSG-------NSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp SCTTCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECCS-------SCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred CCCCceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECcC-------CCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 344477777776653 22222 4456666 677777776 334332 3344443 6677777777
Q ss_pred CCCccccc-hh----hccC-CCCcEEecCCCcCCcccch-hh----hc-cccCCeeecCCccccccCCccCcCCCCCCcc
Q 002154 625 QEAIERLP-EA----LCEL-YNLERLNVSGCSHLRELPR-GI----GK-LRKLMYLYNAGTDSLRYLPAGIDELIRLRSV 692 (959)
Q Consensus 625 ~~~i~~lp-~~----i~~L-~~L~~L~l~~~~~l~~lp~-~i----~~-L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 692 (959)
|. ++..+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++| .+..... .
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~--~-------- 156 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSS--D-------- 156 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCH--H--------
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHH--H--------
Confidence 76 55333 22 3333 677777777765 444432 22 22 246777777766 2221100 0
Q ss_pred CceeecCccCCCCCccccccCC-CCCCceEeCCCCCCChhhhHhhcccCC-CCCCceEEeecCCCCCCccccccCCCchh
Q 002154 693 RKFVVGGGYDRACSLGSLKKLN-LLRQCSIDGLGGVSDAGEARRAELEKK-KNLFDLDLHFGHSRDGDEEQAGRRENEED 770 (959)
Q Consensus 693 ~~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 770 (959)
.....+..++ +|+.|++.++.-...........+... ++|+.|+++.+.....
T Consensus 157 ------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------------- 211 (362)
T 3goz_A 157 ------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK------------- 211 (362)
T ss_dssp ------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------------
T ss_pred ------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-------------
Confidence 0001112222 444444443211011112222334444 4778888877652111
Q ss_pred hHHHHhhhCCC-CCCCceEEEeeeCCCCCCCCc----ChhhcccccceeeecCccC--C-----CcC-CCCCCcCCCcce
Q 002154 771 KDERLLEALGP-PPNLKKLVIDEYRGRRNVVPI----NWIMSLTNLRDLSLNWWRN--C-----EHL-PPLGKLPSLEDL 837 (959)
Q Consensus 771 ~~~~~l~~l~~-~~~L~~L~l~~~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~--~-----~~l-~~l~~l~~L~~L 837 (959)
....+...+.. +++|+.|++++|.... .++ .++..+++|+.|+|++|.. . ..+ ..+..+++|+.|
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 12223333333 3578888888877655 212 2234677888888888741 1 111 145677788888
Q ss_pred eecCcc
Q 002154 838 WIQGMK 843 (959)
Q Consensus 838 ~l~~~~ 843 (959)
+++++.
T Consensus 290 dL~~N~ 295 (362)
T 3goz_A 290 DKNGKE 295 (362)
T ss_dssp CTTSCB
T ss_pred ecCCCc
Confidence 887654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=2.4e-11 Score=124.49 Aligned_cols=128 Identities=29% Similarity=0.440 Sum_probs=102.9
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccchh-
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPEA- 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~~- 634 (959)
.++|+.|.++++. +..+.|..|..+++|++|+|++ +.+..+|.. +..+++|++|+|++|. ++.+|..
T Consensus 39 ~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~-------N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGS-------NQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV 107 (229)
T ss_dssp CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCC-------CCCCCcChhhcccCCCcCEEECCCCc-CCccChhH
Confidence 3789999999887 4455567788899999999998 667777654 6889999999999998 8888764
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceee
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVV 697 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 697 (959)
+..+++|++|++++|. +..+|..+..+++|++|++++| .+..+|.. +..+++|+.|++..+
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 5789999999999887 8899999999999999999988 66677654 666777777765543
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=1.6e-12 Score=143.73 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=157.5
Q ss_pred hhhhhhHHhccCCcccEEEccccCcccccccccccc-----ccccccC-CccEEeeccCCCcccc-chhhccC-----CC
Q 002154 573 FSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-----ENIEKLL-HLKYLSLAHQEAIERL-PEALCEL-----YN 640 (959)
Q Consensus 573 ~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~~i~~l-p~~i~~L-----~~ 640 (959)
+.+.+|.++...++|++|+|++ +.+...+ ..+..++ +|++|+|++|. ++.. +..+..+ ++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~-------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSL-------NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTT-------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT
T ss_pred chHHHHHHHhCCCCceEEEccC-------CCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC
Confidence 4455677777777899999999 5566554 5677888 89999999998 7655 5566664 99
Q ss_pred CcEEecCCCcCCccc-chh----hhcc-ccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccC
Q 002154 641 LERLNVSGCSHLREL-PRG----IGKL-RKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKL 713 (959)
Q Consensus 641 L~~L~l~~~~~l~~l-p~~----i~~L-~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L 713 (959)
|++|++++|. +... +.. +..+ ++|++|++++| .+...+.. +. ..+..+
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-----------------------~~l~~~ 136 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFK-----------------------QAFSNL 136 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHH-----------------------HHHTTS
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHH-----------------------HHHHhC
Confidence 9999999988 6544 343 3444 89999999998 34443321 11 111221
Q ss_pred -CCCCCceEeCCCCCCChhhhHhhcccCCC-CCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCC-CCCceEEE
Q 002154 714 -NLLRQCSIDGLGGVSDAGEARRAELEKKK-NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPP-PNLKKLVI 790 (959)
Q Consensus 714 -~~L~~L~i~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l 790 (959)
++|+.|++.+..-...........+.... +|+.|+++.+...... ...+...+... ++|+.|++
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-------------~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-------------CAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------------HHHHHHHHHTSCTTCCEEEC
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-------------HHHHHHHHHhCCCCCCEEEC
Confidence 24444444432110111123334444454 8999999988632111 22333444445 59999999
Q ss_pred eeeCCCCCC---CCcChhhc-ccccceeeecCccCCCcCC------CCCCcCCCcceeecCccCceEeCccccCCCCCCC
Q 002154 791 DEYRGRRNV---VPINWIMS-LTNLRDLSLNWWRNCEHLP------PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTD 860 (959)
Q Consensus 791 ~~~~~~~~~---~~p~~~~~-l~~L~~L~L~~~~~~~~l~------~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 860 (959)
++|...... + +..+.. .++|+.|+|++|. +...+ .+..+++|+.|++++|. +..+.......-
T Consensus 204 s~N~i~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l---- 276 (362)
T 3goz_A 204 SANLLGLKSYAEL-AYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKAL---- 276 (362)
T ss_dssp TTSCGGGSCHHHH-HHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHH----
T ss_pred CCCCCChhHHHHH-HHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHH----
Confidence 999865410 1 223333 4699999999994 44432 35788999999999875 222222211000
Q ss_pred CccccCCCccceeeecccccccc
Q 002154 861 GSSVIAFPKLRRLRFVCMEELEE 883 (959)
Q Consensus 861 ~~~~~~fp~L~~L~l~~~~~L~~ 883 (959)
......+++|+.|+++++ .+..
T Consensus 277 ~~~~~~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp HTTSTTCCEEEEECTTSC-BCCG
T ss_pred HHHhccCCceEEEecCCC-cCCC
Confidence 001226788999999884 4443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=7.7e-12 Score=131.13 Aligned_cols=167 Identities=21% Similarity=0.189 Sum_probs=108.9
Q ss_pred cCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhcc
Q 002154 583 KLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKL 662 (959)
Q Consensus 583 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 662 (959)
.+..+..+++++ +.+..++ .+..+.+|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +..+
T Consensus 17 ~l~~l~~l~l~~-------~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGK-------QSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHTC-------SCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhcC-------CCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 445566677776 5566666 57788888888888887 88887 58888888888888876 777776 8888
Q ss_pred ccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCC
Q 002154 663 RKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKK 742 (959)
Q Consensus 663 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 742 (959)
++|++|++++| .+..+|.... +
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~~--~------------------------------------------------------- 106 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIPS--A------------------------------------------------------- 106 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCCC--S-------------------------------------------------------
T ss_pred CCCCEEECCCC-ccCCcCcccc--C-------------------------------------------------------
Confidence 88888888877 3433332110 2
Q ss_pred CCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCC
Q 002154 743 NLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNC 822 (959)
Q Consensus 743 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 822 (959)
+|+.|+++.+.... ++.+..+++|+.|++++|.... + + .+..+++|+.|++++| .+
T Consensus 107 ~L~~L~L~~N~l~~-------------------~~~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N-~i 162 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-------------------TDSLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGN-EI 162 (263)
T ss_dssp SCCEEECCSSCCSB-------------------SGGGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTS-CC
T ss_pred cccEEEccCCccCC-------------------ChhhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCC-cC
Confidence 22222222222100 0123445566777776666655 3 3 5667778888888777 44
Q ss_pred CcCCCCCCcCCCcceeecCcc
Q 002154 823 EHLPPLGKLPSLEDLWIQGMK 843 (959)
Q Consensus 823 ~~l~~l~~l~~L~~L~l~~~~ 843 (959)
..++.+..+++|+.|++++++
T Consensus 163 ~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 163 TNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CBCTTSTTCCCCCEEEEEEEE
T ss_pred cchHHhccCCCCCEEeCCCCc
Confidence 455667778888888887644
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=2e-11 Score=121.94 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=98.0
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc-cchh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER-LPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~-lp~~ 634 (959)
.+++|+.|.+.++.. .. +| .+..+++|++|++++ +.+..++ .+..+++|++|++++|. +.. .|..
T Consensus 42 ~l~~L~~L~l~~n~i---~~-l~-~l~~l~~L~~L~l~~-------n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINV---TD-LT-GIEYAHNIKDLTINN-------IHATNYN-PISGLSNLERLRIMGKD-VTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCC---SC-CT-TGGGCTTCSEEEEES-------CCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCC
T ss_pred hcCCccEEeccCCCc---cC-hH-HHhcCCCCCEEEccC-------CCCCcch-hhhcCCCCCEEEeECCc-cCcccChh
Confidence 678899999988863 33 34 378889999999998 4455554 68889999999999988 664 6778
Q ss_pred hccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCceee
Q 002154 635 LCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVV 697 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 697 (959)
++++++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|++..+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 8999999999999987334467888899999999999885466665 5677777777765443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=2e-11 Score=118.52 Aligned_cols=131 Identities=23% Similarity=0.199 Sum_probs=90.4
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc-cchh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER-LPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~-lp~~ 634 (959)
..++|+.|.+.++.... ..+|..+..+++|++|++++ +.+..+ ..++.+++|++|+|++|. +.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~~-------n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLIN-------VGLISV-SNLPKLPKLKKLELSENR-IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEES-------SCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHH
T ss_pred CcccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCcC-------CCCCCh-hhhccCCCCCEEECcCCc-CchHHHHH
Confidence 34667777777776320 22455567777888888887 445555 567778888888888887 665 6666
Q ss_pred hccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCccccccCCc----cCcCCCCCCccCceeecC
Q 002154 635 LCELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGTDSLRYLPA----GIDELIRLRSVRKFVVGG 699 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 699 (959)
+.++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6678888888888775 77765 56777888888888777 4556665 566777777777665543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.3e-11 Score=117.28 Aligned_cols=125 Identities=23% Similarity=0.235 Sum_probs=92.6
Q ss_pred CCCCccEEEecCCcchhhh-hhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc-cch
Q 002154 556 GLRGLRSLLVESDEYSWFS-EVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER-LPE 633 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~-~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~-lp~ 633 (959)
..++++.|.+.++.. . ..+|..+..+++|++|++++ +.+..+ ..++++++|++|+|++|. +.. +|.
T Consensus 15 ~~~~l~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~l~~-------n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRS---NEGKLEGLTDEFEELEFLSTIN-------VGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCBC---BTTBCCSCCTTCTTCCEEECTT-------SCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CCccCeEEEccCCcC---ChhHHHHHHhhcCCCcEEECcC-------CCCCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 346788888887763 2 23455567888888888888 455555 667888888888888888 666 777
Q ss_pred hhccCCCCcEEecCCCcCCcccc--hhhhccccCCeeecCCccccccCCc----cCcCCCCCCccCc
Q 002154 634 ALCELYNLERLNVSGCSHLRELP--RGIGKLRKLMYLYNAGTDSLRYLPA----GIDELIRLRSVRK 694 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~ 694 (959)
.++++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 77778888888888876 77665 67888888888888887 5566665 4677777777765
No 119
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.21 E-value=5.3e-11 Score=124.05 Aligned_cols=153 Identities=24% Similarity=0.332 Sum_probs=124.5
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-c
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-E 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~ 609 (959)
..++.+.+..+.+...+.. .+..+++|+.|.+.++. +....+..|..+++|++|+|++ +.+..+| .
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~-------n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLAN-------NQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTT-------SCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECCC-------CcccccChh
Confidence 6788999988887654432 34589999999999987 4455667789999999999999 6677776 4
Q ss_pred cccccCCccEEeeccCCCccccchh-hccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCc-cCcCC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLPEA-LCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPA-GIDEL 686 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L 686 (959)
.+..+++|++|+|++|. ++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++| .+..+|. .+..+
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 178 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC
Confidence 57899999999999998 9888875 5889999999999987 888876 5889999999999998 5666665 47778
Q ss_pred CCCCccCceeecC
Q 002154 687 IRLRSVRKFVVGG 699 (959)
Q Consensus 687 ~~L~~L~~~~~~~ 699 (959)
++|+.|++..+..
T Consensus 179 ~~L~~L~l~~N~~ 191 (251)
T 3m19_A 179 GKLQTITLFGNQF 191 (251)
T ss_dssp TTCCEEECCSCCB
T ss_pred CCCCEEEeeCCce
Confidence 8888877665443
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=4.9e-11 Score=121.33 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=95.3
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++++.|.+.++. +..+.+..|..+++|++|+|++ +.+..+ |..+.++++|++|+|++|. ++.+|.. +
T Consensus 32 ~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~-------N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSN-------NQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCS-------SCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCC-------CcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 578888888876 4444555678888888888888 556655 6778888888888888888 8888875 4
Q ss_pred ccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceee
Q 002154 636 CELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVV 697 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 697 (959)
.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..++.+ +..+++|++|++..+
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 778888888888877 6655 456788888888888888 55666554 666777777665443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=3.5e-11 Score=144.76 Aligned_cols=155 Identities=21% Similarity=0.139 Sum_probs=91.7
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcch-hhhhhhhHHhccCCcccEEEccccCccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYS-WFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~-~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 609 (959)
..++++++..+.....+.... ....|+.+.+...... .....++..+..++.|++|+|++ +.+..+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~-------n~l~~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN-------LQIFNISA 241 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTT-------SCCSCCCG
T ss_pred CccceEEeeCCCCCcchhhHh----hcCccCcccccCccccccceecChhhhccCCCCcEEECCC-------CCCCCCCh
Confidence 456777776655543333322 3334444433322110 01113566688889999999998 66778888
Q ss_pred cccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCC
Q 002154 610 NIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRL 689 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 689 (959)
.++++++|++|+|++|. ++.+|..+++|++|++|+|++|. +..+|..++.|++|++|++++| .+..+|..+++|++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 88889999999999988 88899888999999999999887 7788988999999999999888 677888888888888
Q ss_pred CccCceeecC
Q 002154 690 RSVRKFVVGG 699 (959)
Q Consensus 690 ~~L~~~~~~~ 699 (959)
++|++..+..
T Consensus 319 ~~L~L~~N~l 328 (727)
T 4b8c_D 319 QFLGVEGNPL 328 (727)
T ss_dssp CCEECTTSCC
T ss_pred cEEeCCCCcc
Confidence 8887765543
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=4.6e-11 Score=139.90 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=25.0
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCc
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 673 (959)
++.+++|++|+|++|. +..+|. +..|++|+.|+|++|. +..+ ..+..|++|++|++++|
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS
T ss_pred hccCCCCCEEEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC
Confidence 4444444444444444 443332 4444444444444443 3333 23444444444444444
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=3.3e-10 Score=115.78 Aligned_cols=186 Identities=11% Similarity=0.004 Sum_probs=117.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 243 (959)
..++||++.++++.+++... ..+.+.|+|++|+|||+||+.+++... ...+. ..+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999999643 223489999999999999999987421 11222 23344444433332222222
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhH-HH-hhcc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETV-AL-IMGS 321 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~ 321 (959)
..... .. .. ..+++.+||+||++.......+.+...+.....+.++|+||+.... .. ....
T Consensus 90 ~~~~~-~~---------------~~-~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 90 KEFAR-TA---------------PI-GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHT-SC---------------CS-TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHhc-cc---------------CC-CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11111 00 00 1367899999999776555556666666655667788888876421 11 1223
Q ss_pred cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 322 TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
...+.+.+++.++..+++.+.+...+... ..+....|++.++|.|..+..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44899999999999999988764322111 124455788999999996554443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=6.2e-11 Score=115.97 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=98.9
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEAL 635 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i 635 (959)
.+.+|+.|.+.++... . ++......++|++|+|++ +.+..+ ..++.+++|++|+|++|. ++.+|..+
T Consensus 17 ~~~~L~~L~l~~n~l~---~-i~~~~~~~~~L~~L~Ls~-------N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP---V-IENLGATLDQFDAIDFSD-------NEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCC---S-CCCGGGGTTCCSEEECCS-------SCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCCCc---h-hHHhhhcCCCCCEEECCC-------CCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 6788899999888743 3 244333344899999998 556666 568889999999999998 88888655
Q ss_pred -ccCCCCcEEecCCCcCCcccch--hhhccccCCeeecCCccccccCCcc----CcCCCCCCccCceeec
Q 002154 636 -CELYNLERLNVSGCSHLRELPR--GIGKLRKLMYLYNAGTDSLRYLPAG----IDELIRLRSVRKFVVG 698 (959)
Q Consensus 636 -~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~ 698 (959)
..+++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++..+.
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 889999999999887 788887 7888999999999988 55667764 7777888887766543
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=3.8e-11 Score=138.96 Aligned_cols=108 Identities=25% Similarity=0.359 Sum_probs=63.4
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccC
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCEL 638 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L 638 (959)
+++.|.+.++.. .. +|..+ +++|++|+|++ +.+..+| +.+++|++|+|++|. ++.+|. +.+
T Consensus 60 ~L~~L~Ls~n~L---~~-lp~~l--~~~L~~L~Ls~-------N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNL---SS-LPDNL--PPQITVLEITQ-------NALISLP---ELPASLEYLDACDNR-LSTLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSCC---SC-CCSCC--CTTCSEEECCS-------SCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT-
T ss_pred CccEEEeCCCCC---Cc-cCHhH--cCCCCEEECcC-------CCCcccc---cccCCCCEEEccCCC-CCCcch-hhc-
Confidence 566666666552 22 22212 25677777776 4555666 345677777777776 666666 544
Q ss_pred CCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCCccCc
Q 002154 639 YNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRK 694 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 694 (959)
+|++|++++|. ++.+|. .+++|++|++++| .+..+|. .+++|++|++
T Consensus 121 -~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 121 -SLKHLDVDNNQ-LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp -TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred -CCCEEECCCCc-CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEEC
Confidence 67777777665 666665 4667777777666 4444554 3444444443
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=1.7e-10 Score=120.89 Aligned_cols=144 Identities=21% Similarity=0.234 Sum_probs=89.8
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++.+.+..+.+..++ . +..+++|+.|.++++. +....+ +.++++|++|+|++ +.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~----l~~l~~L~~L~L~~N~---i~~~~~--l~~l~~L~~L~L~~-------N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-G----MQFFTNLKELHLSHNQ---ISDLSP--LKDLTKLEELSVNR-------NRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-T----GGGCTTCCEEECCSSC---CCCCGG--GTTCSSCCEEECCS-------SCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-H----HhhCCCCCEEECCCCc---cCCChh--hccCCCCCEEECCC-------CccCCcCcc
Confidence 44556666655554333 2 2366777777777765 333222 66777777777777 555555543
Q ss_pred ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccccccCCccCcCCCCCC
Q 002154 611 IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLR 690 (959)
Q Consensus 611 i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 690 (959)
.. .+|++|+|++|. ++.+|. +.++++|++|++++|. ++.+| .+..+++|++|++++| .+..+ ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCC
Confidence 32 677777777776 666653 6777777777777765 66665 5667777777777776 44444 4466666666
Q ss_pred ccCceeecC
Q 002154 691 SVRKFVVGG 699 (959)
Q Consensus 691 ~L~~~~~~~ 699 (959)
.|++..+..
T Consensus 176 ~L~l~~N~~ 184 (263)
T 1xeu_A 176 WIDLTGQKC 184 (263)
T ss_dssp EEEEEEEEE
T ss_pred EEeCCCCcc
Confidence 666655443
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=117.28 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=94.3
Q ss_pred EEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhh-hHHhccCCcccEEEccccCccccccccccccc-ccc
Q 002154 535 HLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVL-PQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIE 612 (959)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~-~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~ 612 (959)
.+.+..+.+..+|..+ .+.++.|.+.++.. .... +..|..+++|++|+|++ +.+..++. .++
T Consensus 15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~-------N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSN-------NKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCS-------SCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCC------CCCCCEEEcCCCcC---CccCchhhhccCCCCCEEECCC-------CcCCEECHHHhC
Confidence 3444444444444432 24567788777763 3322 23467788888888887 55666544 677
Q ss_pred ccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCccccccC-CccCcCCCCC
Q 002154 613 KLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTDSLRYL-PAGIDELIRL 689 (959)
Q Consensus 613 ~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L 689 (959)
++.+|++|+|++|. ++.+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+ |..+..+++|
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSL 155 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCC
Confidence 88888888888887 766655 47778888888888876 5555 566777888888888877 44444 4556667777
Q ss_pred CccCceee
Q 002154 690 RSVRKFVV 697 (959)
Q Consensus 690 ~~L~~~~~ 697 (959)
++|++..+
T Consensus 156 ~~L~L~~N 163 (220)
T 2v70_A 156 STLNLLAN 163 (220)
T ss_dssp CEEECCSC
T ss_pred CEEEecCc
Confidence 76655443
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.13 E-value=2.3e-10 Score=115.46 Aligned_cols=126 Identities=29% Similarity=0.448 Sum_probs=80.4
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccchh-
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPEA- 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~~- 634 (959)
.++|+.|.+.++. +..+.+..|.++++|++|++++ +.+..+|.. +..+++|++|+|++|. ++.+|..
T Consensus 27 ~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGG-------NKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCC-------CccCccChhhcCCCCCcCEEECCCCc-CCccCHhH
Confidence 3567777777765 3333444566777777777777 455555543 4677777777777776 6666654
Q ss_pred hccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCcc-CcCCCCCCccCce
Q 002154 635 LCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKF 695 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~ 695 (959)
+.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++.
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEec
Confidence 4677777777777765 6666554 567777777777776 44455543 4555555555443
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=7.4e-11 Score=114.49 Aligned_cols=133 Identities=23% Similarity=0.241 Sum_probs=109.3
Q ss_pred CcEEEEEeeeccCC--CCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccc-c
Q 002154 531 TKILHLMLTLYKGA--SVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD-I 607 (959)
Q Consensus 531 ~~~r~l~~~~~~~~--~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-l 607 (959)
.+++++.+..+.+. .++.. +..+++|+.|.+.++... .. ..+..+++|++|+|++ +.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~-------N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELSE-------NRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEES-------CCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECcC-------CcCchHH
Confidence 67888888887765 34433 348899999999998743 32 4488999999999999 55666 7
Q ss_pred cccccccCCccEEeeccCCCccccc--hhhccCCCCcEEecCCCcCCcccch----hhhccccCCeeecCCccccccCCc
Q 002154 608 PENIEKLLHLKYLSLAHQEAIERLP--EALCELYNLERLNVSGCSHLRELPR----GIGKLRKLMYLYNAGTDSLRYLPA 681 (959)
Q Consensus 608 p~~i~~l~~L~~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~ 681 (959)
|..++++++|++|+|++|. ++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|++.+| ....+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 7778889999999999998 99887 689999999999999987 888876 7889999999999998 5566664
Q ss_pred c
Q 002154 682 G 682 (959)
Q Consensus 682 ~ 682 (959)
.
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=1.8e-10 Score=116.16 Aligned_cols=148 Identities=23% Similarity=0.363 Sum_probs=117.2
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++++.+..+.+..++.. .+..+++|++|.+.++. +..+.+..|..+++|++|+|++ +.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG---VFDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLST-------NQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCS-------SCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChh---hhcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECCC-------CcCCccCHh
Confidence 6788999988887654443 23589999999999987 4455566678999999999999 667777654
Q ss_pred -ccccCCccEEeeccCCCccccchh-hccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCccCcCCC
Q 002154 611 -IEKLLHLKYLSLAHQEAIERLPEA-LCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAGIDELI 687 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 687 (959)
++++++|++|+|++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|.. .+.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB-------CCCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe-------ecCCC
Confidence 6899999999999998 8888875 6899999999999987 7777765 78899999999999832 23456
Q ss_pred CCCccCceeecCc
Q 002154 688 RLRSVRKFVVGGG 700 (959)
Q Consensus 688 ~L~~L~~~~~~~~ 700 (959)
+|+.|........
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 6777766554433
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=6.3e-11 Score=112.39 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=89.4
Q ss_pred ccCCcccEEEccccCccccccccc--cccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcc-cchh
Q 002154 582 DKLTCLRALKLEVRQPWWCQNFIK--DIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRE-LPRG 658 (959)
Q Consensus 582 ~~~~~Lr~L~L~~~~~~~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~ 658 (959)
...++|+.|++++ +.+. .+|..++.+++|++|++++|. ++.+ ..++++++|++|++++|. +.. +|..
T Consensus 14 ~~~~~l~~L~l~~-------n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 83 (149)
T 2je0_A 14 RTPSDVKELVLDN-------SRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVL 83 (149)
T ss_dssp CCGGGCSEEECTT-------CBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred CCCccCeEEEccC-------CcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCc-ccchHHHH
Confidence 3457899999999 5566 788888999999999999998 8888 679999999999999988 666 8888
Q ss_pred hhccccCCeeecCCccccccCC--ccCcCCCCCCccCceeecC
Q 002154 659 IGKLRKLMYLYNAGTDSLRYLP--AGIDELIRLRSVRKFVVGG 699 (959)
Q Consensus 659 i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~ 699 (959)
+..+++|++|++++| .+..+| ..++.+++|++|++..+..
T Consensus 84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 888999999999998 566654 6678888888887765543
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.07 E-value=3.7e-10 Score=115.65 Aligned_cols=129 Identities=25% Similarity=0.374 Sum_probs=109.5
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++.+.+..+.+...+.. .+..+++|+.|.+.++. +..+.+..|..+++|++|+|++ +.+..+|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG---VFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGT-------NQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCS-------SCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCHH---HhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCC-------CcCCccChh
Confidence 7889999998887754322 34589999999999987 4454556689999999999999 677777654
Q ss_pred -ccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCcc
Q 002154 611 -IEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 674 (959)
+..+++|++|+|++|. +..+|..+.++++|++|+|++|. +..+|. .+..+++|++|++.+|+
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 6899999999999999 99999999999999999999987 888875 47899999999999984
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=2.9e-10 Score=125.33 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=84.8
Q ss_pred CCccEEEecCCcchhhhhhhhHHhc-cCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccch-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFD-KLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPE-A 634 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~-~ 634 (959)
+.++.|+++++. +..+.+..|. ++++|++|+|++ +.+..++ ..+.++++|++|+|++|. ++.+|. .
T Consensus 39 ~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~-------N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSH-------NHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCS-------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred CCCCEEECCCCC---CCccChhhhhhcccccCEEECCC-------CcCCccChhhccCCCCCCEEECCCCc-CCcCCHHH
Confidence 457778887776 3444445455 778888888887 5566665 457778888888888887 777765 4
Q ss_pred hccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCccccccCCccC----cCCCCCCccCce
Q 002154 635 LCELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTDSLRYLPAGI----DELIRLRSVRKF 695 (959)
Q Consensus 635 i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~L~~L~~L~~~ 695 (959)
+.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++.
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECC
T ss_pred hCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECC
Confidence 6778888888888776 5555 556777888888888877 566666553 345555555443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=3.9e-10 Score=131.31 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=88.4
Q ss_pred CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccC
Q 002154 559 GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCEL 638 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L 638 (959)
.|+.|.++++.. .. +|. +..+++|++|+|++ +.+..+|..++++++|++|+|++|. ++.+| .++++
T Consensus 442 ~L~~L~Ls~n~l---~~-lp~-~~~l~~L~~L~Ls~-------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDL---TV-LCH-LEQLLLVTHLDLSH-------NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCC---SS-CCC-GGGGTTCCEEECCS-------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTC
T ss_pred CceEEEecCCCC---CC-CcC-ccccccCcEeecCc-------ccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCC
Confidence 367777777763 33 354 77888888888888 6677888888888888888888888 88888 68888
Q ss_pred CCCcEEecCCCcCCccc--chhhhccccCCeeecCCccccccCCccCcC----CCCCCcc
Q 002154 639 YNLERLNVSGCSHLREL--PRGIGKLRKLMYLYNAGTDSLRYLPAGIDE----LIRLRSV 692 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~----L~~L~~L 692 (959)
++|++|+|++|. +..+ |..+..|++|++|++++| .+..+|+.+.. +++|+.|
T Consensus 508 ~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 508 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCcc
Confidence 888888888876 7666 788888888888888887 55666654332 4555554
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=5.7e-10 Score=113.37 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=107.1
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE- 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~- 609 (959)
..++.+.+..+.+...+.. ..+..+++|+.|.+.++. +..+.+..|.++++|++|+|++ +.+..+|.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTS-------NRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCS-------SCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCC-------CccCccCHh
Confidence 5667888888877654221 124589999999999987 4455566789999999999999 66777654
Q ss_pred cccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCcc
Q 002154 610 NIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 674 (959)
.++++++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+ |..+..+++|++|++++|+
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 58899999999999999 8777 6689999999999999987 7666 7789999999999999984
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=6.5e-10 Score=112.93 Aligned_cols=129 Identities=25% Similarity=0.347 Sum_probs=108.6
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
..++.|.+..+.+..++.. .+..+++|+.|.++++. +..+.|..|.++++|++|+|++ +.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~-------N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYG-------NKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCS-------SCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCC-------CcCCccCHh
Confidence 6789999988887654432 34589999999999987 4555677799999999999999 778888765
Q ss_pred -ccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCcc
Q 002154 611 -IEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTD 674 (959)
Q Consensus 611 -i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 674 (959)
+.++++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|. .+..+++|++|++++|+
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 5889999999999999 8877 4578999999999999987 777775 48889999999999983
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=4.8e-10 Score=130.47 Aligned_cols=102 Identities=25% Similarity=0.267 Sum_probs=78.3
Q ss_pred cccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhhccccC
Q 002154 586 CLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIGKLRKL 665 (959)
Q Consensus 586 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 665 (959)
.|++|+|++ +.+..+|. ++++++|++|+|++|. ++.+|..++++++|++|+|++|. ++.+| .++.|++|
T Consensus 442 ~L~~L~Ls~-------n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAH-------KDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTT-------SCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSC
T ss_pred CceEEEecC-------CCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCC
Confidence 478888887 56777776 8888888888888887 77888888888888888888876 77777 78888888
Q ss_pred CeeecCCccccccC--CccCcCCCCCCccCceeecC
Q 002154 666 MYLYNAGTDSLRYL--PAGIDELIRLRSVRKFVVGG 699 (959)
Q Consensus 666 ~~L~l~~~~~l~~~--p~~i~~L~~L~~L~~~~~~~ 699 (959)
++|++++| .+..+ |..++.+++|+.|++..+..
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 88888877 55555 67777788777777655443
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=5.7e-10 Score=122.99 Aligned_cols=142 Identities=24% Similarity=0.305 Sum_probs=113.2
Q ss_pred CcEEEEEeeeccCCCCccccccccC-CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVK-GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE 609 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 609 (959)
..++.|.+..+.+..++... +. .+++|+.|.+.++. +..+.+..|.++++|++|+|++ +.+..+|.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~---~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~-------N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEW---TPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLSS-------NHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTS---SSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCS-------SCCCEECT
T ss_pred CCCCEEECCCCCCCccChhh---hhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECCC-------CcCCcCCH
Confidence 56788999888876544332 33 78999999999987 4555566789999999999999 66777755
Q ss_pred -cccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccchhh----hccccCCeeecCCccccccCCc-c
Q 002154 610 -NIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELPRGI----GKLRKLMYLYNAGTDSLRYLPA-G 682 (959)
Q Consensus 610 -~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~~p~-~ 682 (959)
.+.++.+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|..+ ..+++|++|++++| .+..+|. .
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 182 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD 182 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH
T ss_pred HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH
Confidence 58899999999999999 8777 5689999999999999987 88898775 67999999999998 6667664 3
Q ss_pred CcCCCC
Q 002154 683 IDELIR 688 (959)
Q Consensus 683 i~~L~~ 688 (959)
+..+++
T Consensus 183 ~~~l~~ 188 (361)
T 2xot_A 183 LQKLPA 188 (361)
T ss_dssp HHHSCH
T ss_pred hhhccH
Confidence 444444
No 139
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=1.8e-09 Score=117.13 Aligned_cols=267 Identities=16% Similarity=0.101 Sum_probs=143.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
..++|++..++++.+++..... .......|.|+|++|+|||++|+.+++. .... .++++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHH------
Confidence 4699999999998888753211 1123467889999999999999999873 2222 23444433222211
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC------------------CCCCEE
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS------------------PHGSKL 306 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~i 306 (959)
+...+... + .+..+|+|||+..........+...+... ..+.++
T Consensus 80 ----------------l~~~l~~~-~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 ----------------LAAILANS-L-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----------------HHHHHTTT-C-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----------------HHHHHHHh-c-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11111111 1 34558888888654433333343333221 023567
Q ss_pred EEeccchh-HHHh-hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHhcCC
Q 002154 307 LITTRKET-VALI-MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLLLSK 383 (959)
Q Consensus 307 ivTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~ 383 (959)
|.||.... +... ... ...+.+.+++.++..+++.+.+..... .. ..+....|++.++|.|..+..+...+...
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 76665432 1111 111 257899999999999998887643221 11 13455689999999999887766554321
Q ss_pred --------CCHHHHHHHHhhhhhhhhhccccchHHHHhhhcCCChhhHHHHhHhh-cccCC----------ceechhHHH
Q 002154 384 --------NTEKEWQNILESEIWELEAIEKGLLAPLLLSYKELPSKVKRCFSYCA-VFLKD----------YEIRKHKLI 444 (959)
Q Consensus 384 --------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~Li 444 (959)
-+.+....++.. +...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 133334333322 11223334444444443322 12111 113333332
Q ss_pred H----HHHHhccccc-CCCCcHHHHHHHHHH-HHHHccCccc
Q 002154 445 E----LWMAQGYLSE-KGAKEMEDIGEEYFN-ILARRSFFQD 480 (959)
Q Consensus 445 ~----~W~a~g~i~~-~~~~~~e~~~~~~~~-~L~~~~ll~~ 480 (959)
+ +-+..|++.. ..+....+.|.+||+ ++.+|+|||+
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2 3456788754 345666788888887 8888888875
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=1e-09 Score=107.15 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=104.1
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN 610 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 610 (959)
.+++.+.+..+.+..++. +. ...++|+.|+++++... .+ ..+..+++|++|+|++ +.+..+|..
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~---~~~~~L~~L~Ls~N~l~---~~--~~l~~l~~L~~L~Ls~-------N~l~~~~~~ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG---ATLDQFDAIDFSDNEIR---KL--DGFPLLRRLKTLLVNN-------NRICRIGEG 82 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG---GGTTCCSEEECCSSCCC---EE--CCCCCCSSCCEEECCS-------SCCCEECSC
T ss_pred CCceEEEeeCCCCchhHH-hh---hcCCCCCEEECCCCCCC---cc--cccccCCCCCEEECCC-------CcccccCcc
Confidence 678889988887765432 22 13349999999999743 32 3488999999999999 678888766
Q ss_pred c-cccCCccEEeeccCCCccccch--hhccCCCCcEEecCCCcCCcccchh----hhccccCCeeecCCcc
Q 002154 611 I-EKLLHLKYLSLAHQEAIERLPE--ALCELYNLERLNVSGCSHLRELPRG----IGKLRKLMYLYNAGTD 674 (959)
Q Consensus 611 i-~~l~~L~~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 674 (959)
+ +.+++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5 899999999999999 999997 89999999999999987 8888875 8999999999998873
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=3.7e-09 Score=114.66 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=115.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 243 (959)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++++.+...... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 46999999999999998643 223389999999999999999987411 11121 23344443322221 11222
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHh-cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HH-Hhhc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVV-EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VA-LIMG 320 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~ 320 (959)
+..+... ...+ .+++.++|+||++......+..+...+.....++++|+||+... +. ....
T Consensus 93 ~~~~~~~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 93 IKHFAQK----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HHHHHHB----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHhc----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 2211100 0002 45689999999977555555666666665556778888886532 11 1123
Q ss_pred ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhH-HHHHHHH
Q 002154 321 STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLA-AKTIASL 379 (959)
Q Consensus 321 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla-i~~~~~~ 379 (959)
....+.+.+++.++..+++...+...+... ..+....|++.++|.|.. +..+...
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345899999999999999988764221111 124456899999999954 4444443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=4.5e-09 Score=114.22 Aligned_cols=286 Identities=12% Similarity=0.122 Sum_probs=162.0
Q ss_pred CCCccEEEecCCcchhhhhhhhHHhcc-CCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch-h
Q 002154 557 LRGLRSLLVESDEYSWFSEVLPQLFDK-LTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE-A 634 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~ 634 (959)
+.+++.|.+.+.-.. .. +. .+.. +++|++|||++ +.+......-+.++.++++.+..+. +|. .
T Consensus 24 ~~~l~~L~l~g~i~~--~~-~~-~l~~~l~~L~~LdLs~-------n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA--ED-FR-HLRDEFPSLKVLDISN-------AEIKMYSGKAGTYPNGKFYIYMANF----VPAYA 88 (329)
T ss_dssp HHHCSEEEEEEEECH--HH-HH-HHHHSCTTCCEEEEEE-------EEECCEEESSSSSGGGCCEEECTTE----ECTTT
T ss_pred hCceeEEEEeccccH--HH-HH-HHHHhhccCeEEecCc-------ceeEEecCccccccccccccccccc----cCHHH
Confidence 567888988875211 11 11 2333 88999999998 5555221112233335666666553 444 4
Q ss_pred hcc--------CCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCC
Q 002154 635 LCE--------LYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRA 704 (959)
Q Consensus 635 i~~--------L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~ 704 (959)
+.+ +.+|+.|+|.. .++.++. .+..+++|+.|++..+ .+..++.+ +..+.++..+......
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~------ 159 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSD------ 159 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTH------
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchh------
Confidence 566 89999999987 3777775 4788999999999877 44445443 4333333333211100
Q ss_pred CCccccccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCC-ceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCC
Q 002154 705 CSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLF-DLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPP 783 (959)
Q Consensus 705 ~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 783 (959)
.......+.. ..+.++..|+ .+.+.... .....+...-..+.
T Consensus 160 ----~~~~~~~i~~-----------------~~f~~~~~L~~~i~~~~~~----------------~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 160 ----AYRFKNRWEH-----------------FAFIEGEPLETTIQVGAMG----------------KLEDEIMKAGLQPR 202 (329)
T ss_dssp ----HHHTSTTTTT-----------------SCEEESCCCEEEEEECTTC----------------CHHHHHHHTTCCGG
T ss_pred ----hhhccccccc-----------------cccccccccceeEEecCCC----------------cHHHHHhhcccCcc
Confidence 0000011110 1122223333 22222111 00122222333455
Q ss_pred CCceEEEeeeCCCCCCCCcChh-hcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCC
Q 002154 784 NLKKLVIDEYRGRRNVVPINWI-MSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTD 860 (959)
Q Consensus 784 ~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 860 (959)
++..+.+.+..... - ...+ ..+++|+.|+|.+| .++.++ .+..+++|+.|.+.+ +++.|+...+.
T Consensus 203 ~~~~l~~~~~l~~~--~-~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~------ 270 (329)
T 3sb4_A 203 DINFLTIEGKLDNA--D-FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFS------ 270 (329)
T ss_dssp GCSEEEEEECCCHH--H-HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT------
T ss_pred ccceEEEeeeecHH--H-HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhh------
Confidence 67777776653221 1 1111 24778888888877 466666 477788888888876 27777766543
Q ss_pred CccccCCCccc-eeeecccccccccccccccccccccCcccceeeeecCCCCcCCCc-CCCCCCCcceEE
Q 002154 861 GSSVIAFPKLR-RLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD-HLLQKSTLQGFG 928 (959)
Q Consensus 861 ~~~~~~fp~L~-~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~ 928 (959)
++++|+ .+.+.+ +++.+... .+..+++|+.|++.+ +.++.++. .+.++++|+.|+
T Consensus 271 -----~~~~L~~~l~l~~--~l~~I~~~-----aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 -----NCGRLAGTLELPA--SVTAIEFG-----AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -----TCTTCCEEEEECT--TCCEECTT-----TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred -----CChhccEEEEEcc--cceEEchh-----hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 667888 888876 56665432 356788899988876 46777765 567788888876
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=5.2e-10 Score=134.53 Aligned_cols=109 Identities=22% Similarity=0.289 Sum_probs=86.3
Q ss_pred cCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch
Q 002154 554 VKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE 633 (959)
Q Consensus 554 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~ 633 (959)
+..++.|+.|.++++.. .. +|..+.++++|++|+|++ +.+..+|..+++|++|++|+|++|. ++.+|.
T Consensus 220 ~~~l~~L~~L~Ls~n~l---~~-l~~~~~~l~~L~~L~Ls~-------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI---FN-ISANIFKYDFLTRLYLNG-------NSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp --CCCCCCEEECTTSCC---SC-CCGGGGGCCSCSCCBCTT-------SCCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hccCCCCcEEECCCCCC---CC-CChhhcCCCCCCEEEeeC-------CcCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 34778888888888763 33 343355788888888888 6677888888888888888888888 888888
Q ss_pred hhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCccc
Q 002154 634 ALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGTDS 675 (959)
Q Consensus 634 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 675 (959)
.+++|++|++|+|++|. +..+|..+++|++|++|++++|..
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 88888888888888876 788888888888888888888843
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=2.3e-09 Score=106.34 Aligned_cols=103 Identities=25% Similarity=0.395 Sum_probs=64.0
Q ss_pred CccEEEecCCcchhhhhhhhH-HhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccch-hh
Q 002154 559 GLRSLLVESDEYSWFSEVLPQ-LFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPE-AL 635 (959)
Q Consensus 559 ~LrsL~~~~~~~~~~~~~~~~-~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~-~i 635 (959)
+++.|.+.++. +..+.+. .|..+++|++|+|++ +.+..+ |..++++++|++|+|++|. ++.+|. .+
T Consensus 30 ~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~-------N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKR-------NQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMF 98 (192)
T ss_dssp TCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCS-------SCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSS
T ss_pred CCCEEECCCCc---CCccCCccccccCCCCCEEECCC-------CCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHh
Confidence 66677776665 2332222 356667777777776 445544 5566677777777777776 665554 36
Q ss_pred ccCCCCcEEecCCCcCCccc-chhhhccccCCeeecCCc
Q 002154 636 CELYNLERLNVSGCSHLREL-PRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 673 (959)
.++++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 667777777777665 4433 555666777777777666
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=5.1e-09 Score=103.77 Aligned_cols=103 Identities=19% Similarity=0.365 Sum_probs=52.3
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccch-hh
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPE-AL 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~-~i 635 (959)
++|+.|.+.++.. .. +|..|.++++|++|+|++ +.+..++ ..+.++++|++|+|++|. ++.+|. .+
T Consensus 31 ~~l~~L~L~~n~i---~~-ip~~~~~l~~L~~L~Ls~-------N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQF---TL-VPKELSNYKHLTLIDLSN-------NRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSCC---CS-CCGGGGGCTTCCEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred CCCCEEECCCCcC---ch-hHHHhhcccCCCEEECCC-------CcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 3455555555542 22 233455555555555555 3444443 235555555555555555 544443 35
Q ss_pred ccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCc
Q 002154 636 CELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGT 673 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 673 (959)
.++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 555555555555554 4455442 445555555555554
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=2.2e-09 Score=106.41 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=88.1
Q ss_pred cEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc--ccccCCccEEeeccCCCcccc-chhhcc
Q 002154 561 RSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN--IEKLLHLKYLSLAHQEAIERL-PEALCE 637 (959)
Q Consensus 561 rsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~--i~~l~~L~~L~L~~~~~i~~l-p~~i~~ 637 (959)
+++.++++.. .. +|..+. ..|++|++++ +.+..++.. ++.+++|++|+|++|. ++.+ |..+.+
T Consensus 11 ~~l~~s~~~l---~~-ip~~~~--~~l~~L~l~~-------n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGL---KE-IPRDIP--LHTTELLLND-------NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCC---SS-CCSCCC--TTCSEEECCS-------CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCCc---Cc-CccCCC--CCCCEEECCC-------CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 5667766652 22 333222 3888999988 667777653 8889999999999988 7766 667888
Q ss_pred CCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCccCcCCCCCCccCceee
Q 002154 638 LYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVV 697 (959)
Q Consensus 638 L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 697 (959)
+++|++|+|++|. +..+|. .+..+++|++|++++|......|..+..+++|+.|++..+
T Consensus 77 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999999999887 666654 4788899999999888433344566777777777765443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=1.7e-11 Score=122.68 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=75.9
Q ss_pred hhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccc
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELP 656 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 656 (959)
+|..+..+++|++|+|++ +.+..+| .++++++|++|++++|. ++.+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~-------n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALST-------NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSE-------EEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECCC-------CCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 344577788888888887 5566677 77788888888888887 77788777777888888888775 76776
Q ss_pred hhhhccccCCeeecCCccccccCCc--cCcCCCCCCccCce
Q 002154 657 RGIGKLRKLMYLYNAGTDSLRYLPA--GIDELIRLRSVRKF 695 (959)
Q Consensus 657 ~~i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~ 695 (959)
.+..+++|++|++++| .+..+|. .+..+++|++|++.
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEEC
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEec
Confidence 5777888888888777 4444432 35555555555544
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=3.5e-11 Score=120.33 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=115.8
Q ss_pred hccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcccchhhh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRELPRGIG 660 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 660 (959)
+.....+..++++.+.+..+...++.+|..++++++|++|+|++|. ++.+| .+.++++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 3334444444444422211334577788899999999999999998 99999 89999999999999987 889999888
Q ss_pred ccccCCeeecCCccccccCCccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCC------hhhhH
Q 002154 661 KLRKLMYLYNAGTDSLRYLPAGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSD------AGEAR 734 (959)
Q Consensus 661 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~------~~~~~ 734 (959)
.+++|++|++++| .+..+| .++.+++|+.|++..+.... ...+..+..+++|+.|.+.+..-... .....
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 9999999999998 666666 68888999999887765542 11224577888999998876321000 01112
Q ss_pred hhcccCCCCCCceE
Q 002154 735 RAELEKKKNLFDLD 748 (959)
Q Consensus 735 ~~~l~~~~~L~~L~ 748 (959)
...+..+++|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 22366778888876
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.87 E-value=5.3e-09 Score=103.62 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=92.0
Q ss_pred cEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccccch-hhccCC
Q 002154 561 RSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERLPE-ALCELY 639 (959)
Q Consensus 561 rsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~ 639 (959)
+++.+.++. +.. +|..+ .++|++|+|++ +.+..+|..+.++.+|++|+|++|. ++.++. .+.+++
T Consensus 13 ~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~~-------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG---LKV-LPKGI--PRDVTELYLDG-------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCCEEECCS-------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCC---CCc-CCCCC--CCCCCEEECCC-------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 455666554 223 23222 35889999998 7788888889999999999999998 887765 688999
Q ss_pred CCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceee
Q 002154 640 NLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVV 697 (959)
Q Consensus 640 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 697 (959)
+|++|+|++|. +..+|. .+..+++|++|++++| .+..+|.+ +..+++|+.|++..+
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 99999999987 777764 5889999999999988 66777764 667777777765543
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=8.8e-09 Score=100.67 Aligned_cols=104 Identities=28% Similarity=0.470 Sum_probs=70.9
Q ss_pred CCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccccc-ccccCCccEEeeccCCCccccchh-h
Q 002154 558 RGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPEN-IEKLLHLKYLSLAHQEAIERLPEA-L 635 (959)
Q Consensus 558 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~i~~lp~~-i 635 (959)
++|++|.+.++. +..+.+..|..+++|++|++++ +.+..+|.. ++++++|++|+|++|. ++.+|.. +
T Consensus 28 ~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQ-------NQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCC-------CcceEeChhHccCCCccCEEECCCCC-ccccCHHHh
Confidence 567777777765 3343445567777777777777 556666543 5677777777777777 7666654 4
Q ss_pred ccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCc
Q 002154 636 CELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGT 673 (959)
Q Consensus 636 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 673 (959)
.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 677777777777765 6666655 366777777777776
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=4.4e-09 Score=114.26 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=75.4
Q ss_pred cccccceeeecCccCCCcCCCC-CCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccc
Q 002154 807 SLTNLRDLSLNWWRNCEHLPPL-GKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWD 885 (959)
Q Consensus 807 ~l~~L~~L~L~~~~~~~~l~~l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~ 885 (959)
.+.+++.+.+.+.-.......+ ..+++|+.|+|.++. ++.|+...+. .+++|+.|.|.+ +++.+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~-----------~~~~L~~l~l~~--ni~~I~ 265 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA-----------QKKYLLKIKLPH--NLKTIG 265 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT-----------TCTTCCEEECCT--TCCEEC
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh-----------CCCCCCEEECCc--ccceeh
Confidence 3667788877765211111111 136899999998754 8889887653 678999999987 366665
Q ss_pred cccccccccccCcccc-eeeeecCCCCcCCC-cCCCCCCCcceEEEccC
Q 002154 886 CGTAIKGEIIIMARLS-SLSIVYCPKLKALP-DHLLQKSTLQGFGIYHC 932 (959)
Q Consensus 886 ~~~~~~~~~~~~~~L~-~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c 932 (959)
.. .+..+++|+ .|.+.+ .++.++ ..+.+|++|+.|++.+.
T Consensus 266 ~~-----aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 266 QR-----VFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TT-----TTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred HH-----HhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 42 366789999 999988 677776 56788999999998643
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2e-08 Score=109.14 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=115.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc-ccc-eeEEEEeCCCCCHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR-NFQ-KRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~~ 242 (959)
.+++|+++.++.+.+++... ....+.|+|++|+||||+|+.+++. ... .+. ..+.+..+..... ..++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-NVIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-HTTHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-HHHHH
Confidence 46999999999999988643 3334899999999999999999874 211 111 1233433321100 00111
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHH-hcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhH-HHh-h
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYV-VEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETV-ALI-M 319 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~ 319 (959)
.+. ....... ..+++.++|+||++......+..+...+.....++++|+||..... ... .
T Consensus 96 ~~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 KVK-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHH-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111 0010000 1267889999999776555666677777665667888888866421 111 1
Q ss_pred cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh
Q 002154 320 GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL 380 (959)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 380 (959)
.....+.+.+++.++...++...+...+.. -..+....|++.++|.|..+..+...+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 223478999999999999998876432211 123455678899999998665544433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=8.7e-09 Score=100.13 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=72.6
Q ss_pred cEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchh-hccC
Q 002154 561 RSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEA-LCEL 638 (959)
Q Consensus 561 rsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L 638 (959)
+.+.+.++.. .. +|..+ .++|++|+|++ +.+..+ |..++++++|++|+|++|. ++.+|.. +.++
T Consensus 15 ~~l~~~~n~l---~~-iP~~~--~~~L~~L~Ls~-------N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRL---AS-VPAGI--PTDKQRLWLNN-------NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCC---SS-CCSCC--CTTCSEEECCS-------SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCC---Cc-cCCCc--CCCCcEEEeCC-------CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 4556665542 22 23222 26788888887 556666 5567788888888888887 7777765 4678
Q ss_pred CCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCccC
Q 002154 639 YNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAGI 683 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i 683 (959)
++|++|+|++|. +..+|.. +..+++|++|++++| .+...+..+
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~~ 124 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECRDI 124 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBGGG
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCC-CcccccccH
Confidence 888888888776 7777765 777888888888877 444444433
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.75 E-value=1.7e-08 Score=98.03 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=85.8
Q ss_pred ccEEEccccCccccccccccccccccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccchh-hhcccc
Q 002154 587 LRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELPRG-IGKLRK 664 (959)
Q Consensus 587 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~ 664 (959)
-+.+++++ +.+..+|..+. .+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..+++
T Consensus 14 ~~~l~~~~-------n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQN-------IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCS-------SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CcEEEeCC-------CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcch
Confidence 37899998 77889998775 899999999999 8888 5678999999999999986 8889876 589999
Q ss_pred CCeeecCCccccccCCcc-CcCCCCCCccCceeecC
Q 002154 665 LMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGG 699 (959)
Q Consensus 665 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 699 (959)
|++|++++| .+..+|.+ +..+++|+.|++..+..
T Consensus 83 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 83 LTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred hhEEECCCC-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 999999998 67788876 78888888887765543
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.9e-07 Score=98.51 Aligned_cols=175 Identities=10% Similarity=0.000 Sum_probs=109.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccc------ccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKR------NFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~v~~~~~~~~ 238 (959)
..+.||++|+++|...|...- ..+....+.|+|++|+|||++|+.|+++..... .| ..+.|++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 348999999999998886543 234677889999999999999999998532111 12 356778778888899
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHH-HhcCcEEEEEeccCCCCCcCCchhHhhhcCCC-CCCC--EEEEeccchh
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEY-VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS-PHGS--KLLITTRKET 314 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~iivTtr~~~ 314 (959)
++..|++++...........+.+...+... .-++++++++||++..-. .-+.+...+.+. ...+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999633222222333444433331 024678999999996543 223344333211 1222 3344443321
Q ss_pred -----H----HHhhcccceEecCCCChhhhHHHHHHhhcc
Q 002154 315 -----V----ALIMGSTQVISVNELSEMECWSVFESLAFF 345 (959)
Q Consensus 315 -----v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 345 (959)
+ ...++ ...+.+.|++.++-.+++.+++..
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11111 247899999999999999888643
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=2.2e-08 Score=96.92 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=44.8
Q ss_pred CcccEEEccccCccccccccccc-cccccccCCccEEeeccCCCccccchh-hccCCCCcEEecCCCcCCcccchh-hhc
Q 002154 585 TCLRALKLEVRQPWWCQNFIKDI-PENIEKLLHLKYLSLAHQEAIERLPEA-LCELYNLERLNVSGCSHLRELPRG-IGK 661 (959)
Q Consensus 585 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~ 661 (959)
+.|++|+|++ +.+..+ |..++++.+|++|+|++|. ++.+|.. +.++++|++|+|++|. +..+|.. +..
T Consensus 30 ~~l~~L~L~~-------N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLYD-------NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECCS-------SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcCC-------CcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 4556666665 444444 3445556666666666665 5555543 3556666666666554 5555543 555
Q ss_pred cccCCeeecCCc
Q 002154 662 LRKLMYLYNAGT 673 (959)
Q Consensus 662 L~~L~~L~l~~~ 673 (959)
+++|++|++++|
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 666666666555
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.71 E-value=3.5e-08 Score=96.38 Aligned_cols=121 Identities=27% Similarity=0.431 Sum_probs=89.2
Q ss_pred cEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccchh-hccC
Q 002154 561 RSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPEA-LCEL 638 (959)
Q Consensus 561 rsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L 638 (959)
+.+.+.++. +.. +|. .-.++|++|++++ +.+..+|. .++.+++|++|++++|. ++.+|.. +.++
T Consensus 10 ~~l~~~~~~---l~~-~p~--~~~~~l~~L~l~~-------n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKG---LTS-VPT--GIPSSATRLELES-------NKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSC---CSS-CCT--TCCTTCSEEECCS-------SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEecCCC---Ccc-CCC--CCCCCCcEEEeCC-------CcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCC
Confidence 455665554 222 232 2236899999998 56667665 46889999999999998 8888764 5889
Q ss_pred CCCcEEecCCCcCCcccchh-hhccccCCeeecCCccccccCCcc-CcCCCCCCccCceee
Q 002154 639 YNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVV 697 (959)
Q Consensus 639 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 697 (959)
++|++|++++|. ++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++..+
T Consensus 76 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 76 TKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 999999999987 7777765 678999999999988 66777765 466777777766543
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=8.1e-08 Score=106.38 Aligned_cols=198 Identities=15% Similarity=0.204 Sum_probs=116.2
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|++..++.+.+.+.... ....+.|+|+.|+||||+|+.+.+...-...+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999986432 345788999999999999999976321111100 00000000111111
Q ss_pred HHh-------CCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HH
Q 002154 245 EAL-------KPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VA 316 (959)
Q Consensus 245 ~~l-------~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 316 (959)
... .............+...+......+++.++|+||+...+......+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 0000011122333333322211245678999999976655566677777766556677777776432 11
Q ss_pred -HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 317 -LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 317 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
........+++.+++.++..+++.+.+...+... ..+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1123346899999999999999987653211111 124455799999999998766543
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.66 E-value=4.6e-08 Score=94.64 Aligned_cols=101 Identities=25% Similarity=0.343 Sum_probs=71.3
Q ss_pred ccEEEccccCccccccccccccccccccCCccEEeeccCCCcccc-chhhccCCCCcEEecCCCcCCcccchh-hhcccc
Q 002154 587 LRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIERL-PEALCELYNLERLNVSGCSHLRELPRG-IGKLRK 664 (959)
Q Consensus 587 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~ 664 (959)
.+++++++ +.+..+|..+. .+|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++
T Consensus 11 ~~~l~~s~-------n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSG-------KSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTT-------SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeCC-------CCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 46777777 66777776653 677888888877 7766 4467778888888888776 7677655 467788
Q ss_pred CCeeecCCccccccCCcc-CcCCCCCCccCceeecC
Q 002154 665 LMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGG 699 (959)
Q Consensus 665 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 699 (959)
|++|++++| .+..+|.+ +..+++|+.|++..+..
T Consensus 80 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 888888777 56666654 66777777776665443
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=1.5e-07 Score=101.74 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=112.6
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 243 (959)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 46999999999998887532 333489999999999999999987311 11111 2233444332110
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHH-Hh-cCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HHH-hh
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEY-VV-EGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VAL-IM 319 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~-~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~ 319 (959)
.........+... .+ .+++.++|+|++..........+...+.....++++|+||.... +.. ..
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111111 02 25688999999976554445566666665556778888876533 111 12
Q ss_pred cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 320 GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
.....+.+.+++.++..+++...+...+.... .+....|++.++|.+..+.....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 23458999999999999999887643222111 34455788999999986554433
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=6.6e-07 Score=88.46 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=83.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc---c--ccceeEEEEeCCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK---R--NFQKRIWVCVSEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~wv~v~~~~~~~~~ 239 (959)
..++||+++++++.+++.. ...+.+.|+|++|+|||+||+.+++...-. . .....++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 4689999999999999854 234668899999999999999998742110 0 011233443211 1
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC--------cCCchhHhhhcCCCCCCCEEEEecc
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED--------YGKWEPFYNCLKSSPHGSKLLITTR 311 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 311 (959)
+. +..........+...+....-.+++.+|||||+.... ......+...+.. .+..+|+||.
T Consensus 90 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 -------VA-GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp -------HT-TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred -------hc-cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 11 0000000011111222221123568899999996532 2223333333322 2445777776
Q ss_pred chhHHH-------hhcccceEecCCCChhhhHHHH
Q 002154 312 KETVAL-------IMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 312 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 339 (959)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 544221 1222336888888888766543
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=3.4e-06 Score=91.73 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=106.0
Q ss_pred ccccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
-.+++|++..++++..++..... .......|.|+|++|+|||+||+.+++. ....| +.++.+...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~--------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE--------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc---------
Confidence 35799999999999998865321 1224556899999999999999999873 32222 233332211
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC------------------CCCE
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP------------------HGSK 305 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ 305 (959)
........+.. ..+..+|+||++..........+...+.... ++..
T Consensus 93 -------------~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 -------------KSGDLAAILTN---LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------SHHHHHHHHHT---CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------chhHHHHHHHh---ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11112222221 1355688889886654433444444443321 1245
Q ss_pred EEEeccchh-HHHh-hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 306 LLITTRKET-VALI-MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 306 iivTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+|.||.... +... ... ...+.+.+++.++...++.+.+..... .-..+....|++.+.|.|-.+..+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666665422 1111 122 358999999999999999877643221 1123455678889999996555443
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=3.4e-07 Score=94.35 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=100.2
Q ss_pred cccccch---hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQ---KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..|+|++ ..++.+..+... +..+.+.|+|++|+||||||+.+++. .........|++++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3566633 445566655532 13567899999999999999999884 3222334567765431100
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCC--chhHhhhcCCC-CCCC-EEEEeccchh---
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGK--WEPFYNCLKSS-PHGS-KLLITTRKET--- 314 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs-~iivTtr~~~--- 314 (959)
+ .. .+ .. + .++.+||+||++...... .+.+...+... ..+. ++|+||+...
T Consensus 95 -----~-----~~---------~~-~~-~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 -----S-----TA---------LL-EG-L-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -----C-----GG---------GG-TT-G-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred -----H-----HH---------HH-Hh-c-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 00 00 11 1 346789999996643322 23344333221 1222 4777776421
Q ss_pred ------HHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHH
Q 002154 315 ------VALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIAS 378 (959)
Q Consensus 315 ------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 378 (959)
+...+.....+.+.+++.++..+++...+..... .. ..+....|++.++|.+-.+..+..
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111222368999999999999999887642221 11 234556788899998876655443
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.2e-06 Score=95.96 Aligned_cols=196 Identities=9% Similarity=0.024 Sum_probs=113.0
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 243 (959)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+.+.......+. ..+.++.+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 46899999999999998543 223389999999999999999987421111122 123344433222222 2222
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HHHh-hcc
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VALI-MGS 321 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~ 321 (959)
+..+........... ..... -.+++-+|++|++..........+...+.......++|++|.... +... ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~-~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENY-PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHS-CCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHhhhcccccchh-----hcccC-CCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 222210000000000 00011 124567999999976554445556666655555667777775432 1111 122
Q ss_pred cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 322 TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
...+.+.+++.++....+...+..... ... .+....|++.++|.|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 347899999999999999887643221 111 3455689999999998654443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=1.2e-05 Score=89.15 Aligned_cols=139 Identities=10% Similarity=0.117 Sum_probs=85.2
Q ss_pred CCCceEEEeeeCCCCCCCCcChhhcccccceeeecCccCC----CcCC--CCCCcCCCcceeecCccCceEeCccccCCC
Q 002154 783 PNLKKLVIDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNC----EHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVE 856 (959)
Q Consensus 783 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 856 (959)
.+|+.+.+.+. ... ++...|..|++|+.+.+.++... ..++ .+..+++|+.+.|.+ +++.|+...+.
T Consensus 248 ~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 248 SGITTVKLPNG-VTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp CCCSEEEEETT-CCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT--
T ss_pred CCccEEEeCCC-ccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc--
Confidence 35666666332 222 33555667788888888765321 1233 467788888888873 47788766543
Q ss_pred CCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCC-cCCCCCC-CcceEEEccCcc
Q 002154 857 SDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALP-DHLLQKS-TLQGFGIYHCPI 934 (959)
Q Consensus 857 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp-~~l~~l~-~L~~L~l~~c~~ 934 (959)
++++|+.+.|.. +++.+... .+..+ +|+.|.+.++ .+..++ ..+..++ +++.|++-.-
T Consensus 321 ---------~c~~L~~l~lp~--~l~~I~~~-----aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~-- 380 (401)
T 4fdw_A 321 ---------GNRKVTQLTIPA--NVTQINFS-----AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE-- 380 (401)
T ss_dssp ---------TCCSCCEEEECT--TCCEECTT-----SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG--
T ss_pred ---------CCCCccEEEECc--cccEEcHH-----hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH--
Confidence 567899998854 45555432 25566 8999999885 444444 3455564 7888888653
Q ss_pred hHHhhccCCCCCCccc
Q 002154 935 LEERYREKTGEDWPKI 950 (959)
Q Consensus 935 l~~~~~~~~~~~~~~i 950 (959)
..+.++. ...|...
T Consensus 381 ~~~~y~~--a~~W~~f 394 (401)
T 4fdw_A 381 SVEKYKN--ANGWRDF 394 (401)
T ss_dssp GHHHHHH--STTGGGG
T ss_pred HHHHhhh--ccchhhh
Confidence 2334433 2346554
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.35 E-value=4.8e-06 Score=93.17 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=103.7
Q ss_pred cccccchhHH---HHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEK---NELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+. ....| +.++.......-++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHH
Confidence 4689988887 6777777532 3467899999999999999999983 33223 22222111111111
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEE-eccchh--H-HH
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLI-TTRKET--V-AL 317 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v-~~ 317 (959)
.+ ..........+++.+|++|++........+.+...+..+ ...+|. ||.+.. + ..
T Consensus 93 ~~------------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 93 EA------------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH------------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HH------------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 11 111111113467889999999776555555666666542 233443 444432 1 12
Q ss_pred hhcccceEecCCCChhhhHHHHHHhhccCCCC---CCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 318 IMGSTQVISVNELSEMECWSVFESLAFFGKSM---QERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 318 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
.......+.+.+++.++...++.+.+...... ....-..+....|++.++|.+-.+..+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 22345688999999999999998876431110 1111224455678888999887654443
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=1.3e-05 Score=88.83 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=133.3
Q ss_pred hHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCccc
Q 002154 578 PQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLREL 655 (959)
Q Consensus 578 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l 655 (959)
...|.++ +|+.+.+.. + +..++. .+.+ .+|+.+.+.+ . ++.++. .+.++.+|+.+++.++. +..+
T Consensus 129 ~~aF~~~-~L~~i~l~~-------~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I 195 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNE-------G-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKL 195 (401)
T ss_dssp TTTTTTC-CCSEEECCT-------T-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEE
T ss_pred HhhcccC-CccEEEeCC-------C-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEe
Confidence 3345554 577777765 3 444543 2444 3577777765 2 566654 56677777777777654 6666
Q ss_pred chhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhhhH
Q 002154 656 PRGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEAR 734 (959)
Q Consensus 656 p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~ 734 (959)
|...-...+|+.+.+..+ +..++.. +.++++|+.+.+ .. ++...+
T Consensus 196 ~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l---------------------------~~--~l~~I~--- 241 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI---------------------------PE--NVSTIG--- 241 (401)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC---------------------------CT--TCCEEC---
T ss_pred chhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec---------------------------CC--CccCcc---
Confidence 655444567777776533 4444432 444445544432 11 000000
Q ss_pred hhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCC---CCCcChhhccccc
Q 002154 735 RAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRN---VVPINWIMSLTNL 811 (959)
Q Consensus 735 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~---~~~p~~~~~l~~L 811 (959)
...+.+ .+|+.+.+..+- ...+ ..++..+++|+.+.+.++..... .+++..|..|++|
T Consensus 242 ~~aF~~-~~L~~i~lp~~i-~~I~-----------------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 242 QEAFRE-SGITTVKLPNGV-TNIA-----------------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TTTTTT-CCCSEEEEETTC-CEEC-----------------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred cccccc-CCccEEEeCCCc-cEEC-----------------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 011222 356666663211 0000 12445567777777776544300 0335567788889
Q ss_pred ceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccccc
Q 002154 812 RDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTA 889 (959)
Q Consensus 812 ~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~ 889 (959)
+.+.|.+ .++.++ .+..+++|+.+.|.+ +++.|+...+. .+ +|+.+.+.+. .+..+...
T Consensus 303 ~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~-----------~~-~L~~l~l~~n-~~~~l~~~-- 363 (401)
T 4fdw_A 303 ARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN-----------NT-GIKEVKVEGT-TPPQVFEK-- 363 (401)
T ss_dssp CEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS-----------SS-CCCEEEECCS-SCCBCCCS--
T ss_pred CeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC-----------CC-CCCEEEEcCC-CCcccccc--
Confidence 9998874 355554 467788899998854 47777765543 45 8899988873 34443321
Q ss_pred cccccccCc-ccceeeeec
Q 002154 890 IKGEIIIMA-RLSSLSIVY 907 (959)
Q Consensus 890 ~~~~~~~~~-~L~~L~i~~ 907 (959)
.+..++ +++.|.+-.
T Consensus 364 ---~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 364 ---VWYGFPDDITVIRVPA 379 (401)
T ss_dssp ---SCCCSCTTCCEEEECG
T ss_pred ---cccCCCCCccEEEeCH
Confidence 233343 566776654
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=9.5e-07 Score=96.58 Aligned_cols=88 Identities=22% Similarity=0.218 Sum_probs=54.5
Q ss_pred hhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcc
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRE 654 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~ 654 (959)
+|. +..+++|++|+|++ ++.+..+| ..+++|.+|++|+|++|. +..+|. .|.+|++|++|+|++|. +..
T Consensus 24 ip~-l~~~~~L~~L~l~~------~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 94 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIEN------QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LES 94 (347)
T ss_dssp TTT-SCSCSCCSEEECCS------CSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSC
T ss_pred cCC-CCCCCCeeEEEccC------CCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cce
Confidence 444 66666777777763 14455554 456677777777777776 665554 45667777777777665 666
Q ss_pred cchhhhccccCCeeecCCc
Q 002154 655 LPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 655 lp~~i~~L~~L~~L~l~~~ 673 (959)
+|..+....+|++|++.+|
T Consensus 95 ~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSTTTCSCCCCEEECCSS
T ss_pred eCHHHcccCCceEEEeeCC
Confidence 6655443334777777665
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=8.1e-06 Score=86.29 Aligned_cols=186 Identities=19% Similarity=0.152 Sum_probs=101.3
Q ss_pred ccccccchhHHHHHHHHHhccCCc-------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDE 236 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 236 (959)
-.+++|.++.+++|.+.+...... +....+.+.|+|++|+|||+||+.+++. ....| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH--
Confidence 357999999999998887432000 0124566899999999999999999873 22222 223322110
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC-----------CcCCchhHhh---hcC--CC
Q 002154 237 FRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE-----------DYGKWEPFYN---CLK--SS 300 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~---~l~--~~ 300 (959)
.... ......+...+... ...++.+|+|||+... +......+.. .+. ..
T Consensus 89 -------------~~~~-~~~~~~~~~~~~~~-~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 -------------KKFI-GEGASLVKDIFKLA-KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------CCST-THHHHHHHHHHHHH-HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------Hhcc-chHHHHHHHHHHHH-HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0000 00111122222222 4456789999999531 1011112222 222 12
Q ss_pred CCCCEEEEeccchhHH-Hh-h---cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHH
Q 002154 301 PHGSKLLITTRKETVA-LI-M---GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAK 374 (959)
Q Consensus 301 ~~gs~iivTtr~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~ 374 (959)
..+..||.||...... .. . .-...+.+.+.+.++..+++...+..... .....+. .|++.+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~----~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNLE----EIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCHH----HHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCHH----HHHHHcCCCCHHHHH
Confidence 2356677777653211 11 1 11347899999999999999887643221 1222333 67777777 454444
Q ss_pred HH
Q 002154 375 TI 376 (959)
Q Consensus 375 ~~ 376 (959)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 170
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=2.5e-05 Score=81.35 Aligned_cols=188 Identities=14% Similarity=0.080 Sum_probs=99.1
Q ss_pred cccccchhHHHHHHHHHhccCCc------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..++++.+++...... +....+.+.|+|++|+|||++|+.+++. .... .+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 46899998887776654321100 1134466889999999999999999883 3222 234444432110
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC------------CcCCch---hHhhhcCC--CC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE------------DYGKWE---PFYNCLKS--SP 301 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~------------~~~~~~---~l~~~l~~--~~ 301 (959)
........+...+... ....+.+|++||+..- ...... .+...+.. ..
T Consensus 79 --------------~~~~~~~~~~~~~~~a-~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEA-RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------------STTHHHHHHHHHHHHH-HHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------------ccChhHHHHHHHHHHH-HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0001112222233333 4456789999999643 111112 22222222 12
Q ss_pred CCCEEEEeccchhH-HHh-hc--c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHH
Q 002154 302 HGSKLLITTRKETV-ALI-MG--S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKT 375 (959)
Q Consensus 302 ~gs~iivTtr~~~v-~~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~ 375 (959)
.+..||.||..... ... .. . ...+.+.+.+.++-.+++...+..... ..........+++.+.|.+- .+..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 34556666654331 111 11 1 357788999999999998887643221 11112234578888888654 4444
Q ss_pred HH
Q 002154 376 IA 377 (959)
Q Consensus 376 ~~ 377 (959)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=9.2e-06 Score=88.95 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=107.0
Q ss_pred cccccchhHHHHHHHHH-hccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC---ccccc-ccce---------------
Q 002154 165 SEIFGRQKEKNELVNRL-LCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN---DSVKR-NFQK--------------- 224 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~-~F~~--------------- 224 (959)
.+++|.+...+.+.+++ ... .... +.|+|+.|+||||+|+.+++. +.... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999888888877 322 1233 899999999999999887662 11000 0010
Q ss_pred -----eEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcC
Q 002154 225 -----RIWVCVSEPF-DEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLK 298 (959)
Q Consensus 225 -----~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 298 (959)
.+.+..+... ......++++..+....... ... .+.. +.+++-++|+|++..-+......+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~-~ls~--l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-----FQD-SKDG--LAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc-----ccc-cccc--cCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 1111111100 00012233333322000000 000 0000 12367799999997755555556666665
Q ss_pred CCCCCCEEEEeccch-hHH-HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 299 SSPHGSKLLITTRKE-TVA-LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 299 ~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
....+..+|++|... .+. ........+++.+++.++..+.+...+...+-.... .+....|++.++|.+..+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 545567788887653 221 122334689999999999999998776422211110 234457889999988766554
Q ss_pred HH
Q 002154 377 AS 378 (959)
Q Consensus 377 ~~ 378 (959)
..
T Consensus 237 l~ 238 (354)
T 1sxj_E 237 LE 238 (354)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=9.3e-06 Score=89.45 Aligned_cols=201 Identities=13% Similarity=0.053 Sum_probs=106.5
Q ss_pred cccccchhHHHH---HHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe----CCCCCHH
Q 002154 165 SEIFGRQKEKNE---LVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV----SEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~~~~~ 237 (959)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 479999988776 444443321 23468999999999999999999984 22111 1112221 2223344
Q ss_pred HHHHHHHHHhCCC--------------------C-------Ccc--cccHHHHHHHHHHH----HhcCc----EEEEEec
Q 002154 238 RIARAIIEALKPG--------------------S-------AKE--LVEFQSLMQHIQEY----VVEGE----KFLLVLD 280 (959)
Q Consensus 238 ~~~~~i~~~l~~~--------------------~-------~~~--~~~~~~~~~~l~~~----~l~~k----~~LlVlD 280 (959)
+.+.+.+...... . ... ......+...+... ...++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 4444444331100 0 000 00011222222111 12244 3499999
Q ss_pred cCCCCCcCCchhHhhhcCCCCCCCEEEEeccc-------------hhH-HHhhcccceEecCCCChhhhHHHHHHhhccC
Q 002154 281 DVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK-------------ETV-ALIMGSTQVISVNELSEMECWSVFESLAFFG 346 (959)
Q Consensus 281 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 346 (959)
++.....+....+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99766555555566656544333 34444421 111 1112234468999999999999998876432
Q ss_pred CCCCCCchHHHHHHHHHHhcC-CchhHHHHHH
Q 002154 347 KSMQERENLEKIGWEIVRKCK-GLPLAAKTIA 377 (959)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~c~-G~Plai~~~~ 377 (959)
.... ..+....|++.+. |.|..+..+.
T Consensus 276 ~~~~----~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 276 DVEM----SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TCCB----CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCC----CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2211 2344557888887 7776554433
No 173
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.18 E-value=2.1e-06 Score=93.85 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=32.6
Q ss_pred cccccccccccCCccEEeecc-CCCccccch-hhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCCccccccCC
Q 002154 604 IKDIPENIEKLLHLKYLSLAH-QEAIERLPE-ALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAGTDSLRYLP 680 (959)
Q Consensus 604 ~~~lp~~i~~l~~L~~L~L~~-~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p 680 (959)
+..+|. ++.+.+|++|+|++ |. ++.+|. .+++|.+|++|+|++|. +..+|. .+.+|++|++|+|++| .+..+|
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 444444 44444444444443 33 444442 34444444444444443 333332 2344444444444444 333444
Q ss_pred cc
Q 002154 681 AG 682 (959)
Q Consensus 681 ~~ 682 (959)
..
T Consensus 97 ~~ 98 (347)
T 2ifg_A 97 WK 98 (347)
T ss_dssp ST
T ss_pred HH
Confidence 33
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=8.2e-06 Score=88.06 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=104.4
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|.++.++.+.+++... ....++.+.|+.|+|||++|+.+++. .. ...+.++.+.. . ...++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHH
Confidence 47999999999999998643 23567888999999999999999874 22 12345554432 1 22222222
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-cCCchhHhhhcCCCCCCCEEEEeccchh-HHH-hhcc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-YGKWEPFYNCLKSSPHGSKLLITTRKET-VAL-IMGS 321 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~ 321 (959)
.... ......+++-+|++||+.... .+....+...+.....+.++|+||.... +.. ....
T Consensus 94 ~~~~-----------------~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 94 TNFA-----------------SAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHH-----------------HBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHH-----------------hhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 1110 000023478899999996544 3344455555544445677888886533 111 1112
Q ss_pred cceEecCCCChhhhHHH-------HHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 322 TQVISVNELSEMECWSV-------FESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 322 ~~~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
...+.+.+++.++-.++ +...+....-.... .+....|++.++|.+..+....
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHHH
Confidence 35799999998874333 22222111111111 2445578888988776544333
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.3e-05 Score=91.98 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=109.4
Q ss_pred cccccchhHHHHHHHHHhccCC-----------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCC
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-----------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEP 233 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 233 (959)
.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++. .. + ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCc
Confidence 5799999999999999865210 00123578999999999999999999984 21 2 2334555544
Q ss_pred CCHHHHHHHHHHHhCCCCCcccccHHHHHHHHH-HHHhcCcEEEEEeccCCCCCcC---CchhHhhhcCCCCCCCEEEEe
Q 002154 234 FDEFRIARAIIEALKPGSAKELVEFQSLMQHIQ-EYVVEGEKFLLVLDDVWNEDYG---KWEPFYNCLKSSPHGSKLLIT 309 (959)
Q Consensus 234 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~~l~~k~~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~iivT 309 (959)
.... ++...+........ ......... .....+++.+||+|++...... .+..+...+... +..||++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS-----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC-----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred chHH-HHHHHHHHHhcccc-----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 4332 22222222210000 000000000 0002367889999999654322 124444444332 3346655
Q ss_pred ccchh---HHHhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch-hHHHHHHH
Q 002154 310 TRKET---VALIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP-LAAKTIAS 378 (959)
Q Consensus 310 tr~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~ 378 (959)
+.... +.........+.+.+++.++..+++...+........+. ....|++.++|.+ -++..+..
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHTH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHHH
Confidence 54322 222222245789999999999998877664322222222 3447889999954 45555433
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=1.6e-05 Score=89.19 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=104.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ--KRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~ 269 (959)
...+.|+|++|+||||||+.+++. ....+. ..++++.. .+..++...+... .. ..+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~~----~~~~~~- 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG------KL----NEFREK- 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------CH----HHHHHH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------cH----HHHHHH-
Confidence 667899999999999999999984 333332 23455432 3444555554311 11 122232
Q ss_pred hcCcEEEEEeccCCCCCc--CCchhHhhhcCC-CCCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHH
Q 002154 270 VEGEKFLLVLDDVWNEDY--GKWEPFYNCLKS-SPHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWS 337 (959)
Q Consensus 270 l~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 337 (959)
+..+.-+|++||++.... ..-+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 333667999999965332 122334443322 23467888888762 222223334678999999999999
Q ss_pred HHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHHHHh------cCC-CCHHHHHHHHhh
Q 002154 338 VFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIASLL------LSK-NTEKEWQNILES 395 (959)
Q Consensus 338 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l------~~~-~~~~~w~~~l~~ 395 (959)
++.+.+....- ..++ +....|++.++|.+-.+.-+...+ .++ -+.+.++.++..
T Consensus 271 iL~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 271 IARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99887642221 1122 234478889999887554332221 111 255666666654
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.15 E-value=2.4e-05 Score=84.42 Aligned_cols=173 Identities=11% Similarity=0.098 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc--------------------cccceeEEEEe
Q 002154 171 QKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK--------------------RNFQKRIWVCV 230 (959)
Q Consensus 171 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v 230 (959)
++..+.+...+... .-...+.++|+.|+|||++|+.+.+...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566777776532 235679999999999999998887631100 0122 122221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH---HhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEE
Q 002154 231 SEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY---VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLL 307 (959)
Q Consensus 231 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 307 (959)
.. .......+.+...+... ...+++-++|+|++...+.+....+...+.....++.+|
T Consensus 82 ~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 00111222222211111 123567889999997766556667777777666677777
Q ss_pred Eeccchh-HH-HhhcccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 308 ITTRKET-VA-LIMGSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 308 vTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
++|.+.. +. ........+++.++++++..+++.+.. ... .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776542 22 222335689999999999999988764 111 2334578999999998665443
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=5.7e-05 Score=83.88 Aligned_cols=302 Identities=15% Similarity=0.126 Sum_probs=145.0
Q ss_pred cCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccc
Q 002154 554 VKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLP 632 (959)
Q Consensus 554 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp 632 (959)
|.++.+|+++.+... +..+-...|.++.+|+.+++.. + +..++. .+.++..|+.+.+..+ +..++
T Consensus 67 F~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~-------~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPD-------S-VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp TTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCT-------T-CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred hhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCC-------C-ceEccchhhcccccchhhcccCc--eeeec
Confidence 347778888877532 2333344577788888888865 2 444432 3556666776665543 33333
Q ss_pred h-hhccCCCCcEEecCCCcCCcccc-hhhhccccCCeeecCCccccccCCcc-CcCCCCCCccCceeecCccCCCCCccc
Q 002154 633 E-ALCELYNLERLNVSGCSHLRELP-RGIGKLRKLMYLYNAGTDSLRYLPAG-IDELIRLRSVRKFVVGGGYDRACSLGS 709 (959)
Q Consensus 633 ~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~ 709 (959)
. .+.+...++...... +..+. ..+..+.+|+.+.+..+ +..++.+ +..+.+|+.+.+-.. ...... ..
T Consensus 133 ~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~---~~ 203 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRD---YC 203 (394)
T ss_dssp TTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECT---TT
T ss_pred ceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCc---hh
Confidence 2 233333333222222 22222 33566677777776543 2334333 455666666544211 000001 11
Q ss_pred cccCCCCCCceEeCCCCCCChhhhHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEE
Q 002154 710 LKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLV 789 (959)
Q Consensus 710 L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 789 (959)
+.+...|..+.+... ..... ........|+.+.+........ -.....+..|+.+.
T Consensus 204 F~~~~~L~~i~~~~~--~~~i~----~~~~~~~~l~~i~ip~~~~~i~------------------~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 204 FAECILLENMEFPNS--LYYLG----DFALSKTGVKNIIIPDSFTELG------------------KSVFYGCTDLESIS 259 (394)
T ss_dssp TTTCTTCCBCCCCTT--CCEEC----TTTTTTCCCCEEEECTTCCEEC------------------SSTTTTCSSCCEEE
T ss_pred hccccccceeecCCC--ceEee----hhhcccCCCceEEECCCceecc------------------cccccccccceeEE
Confidence 222333333222210 00000 1112234566666532210000 01233455666666
Q ss_pred EeeeCCCCCCCCcChhhcccccceeeecCccCCCcCC--CCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCC
Q 002154 790 IDEYRGRRNVVPINWIMSLTNLRDLSLNWWRNCEHLP--PLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAF 867 (959)
Q Consensus 790 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~f 867 (959)
+..+... +....+..+.+|+.+...... ++ .+..+.+|+.+.+.+ +++.|+...+. .+
T Consensus 260 ~~~~~~~---i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----------~c 319 (394)
T 4fs7_A 260 IQNNKLR---IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFE-----------SC 319 (394)
T ss_dssp ECCTTCE---ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTTTT-----------TC
T ss_pred cCCCcce---eeccccccccccceeccCcee----ecccccccccccccccccc--ccceechhhhc-----------CC
Confidence 6543221 224445566666666654431 22 344566777777643 36666654332 45
Q ss_pred CccceeeecccccccccccccccccccccCcccceeeeecCCCCcCCCc-CCCCCCCcceEEEcc
Q 002154 868 PKLRRLRFVCMEELEEWDCGTAIKGEIIIMARLSSLSIVYCPKLKALPD-HLLQKSTLQGFGIYH 931 (959)
Q Consensus 868 p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~l~~ 931 (959)
.+|+.+.|.. +++.+... .+..+.+|+.+.|.. +++.++. .+.+|++|+++++..
T Consensus 320 ~~L~~i~lp~--~v~~I~~~-----aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEIGKR-----SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCT--TCCEECTT-----TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEeCC--cccEEhHH-----hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 6677777643 34444321 244567777777754 3555543 456677777777743
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=3.8e-05 Score=80.36 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=90.2
Q ss_pred cccccchhHHHHHHHH-------HhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNR-------LLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
..++|....++++.+. +... .....+.+.|+|++|+|||+||+.+++. ....| +.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH-----
Confidence 3578887777766663 2211 1235678999999999999999999983 22222 2222221
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC------CcCCc----hhHhhhcCC---CCCCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE------DYGKW----EPFYNCLKS---SPHGS 304 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~------~~~~~----~~l~~~l~~---~~~gs 304 (959)
.+. +. ........+...+... ...+..+|+|||+... ....- ..+...+.. .....
T Consensus 100 --------~~~-g~-~~~~~~~~~~~~~~~~-~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 100 --------KMI-GF-SETAKCQAMKKIFDDA-YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp --------GCT-TC-CHHHHHHHHHHHHHHH-HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred --------Hhc-CC-chHHHHHHHHHHHHHH-HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 011 11 0001111222233333 4567899999998532 11111 222232322 12233
Q ss_pred EEEEeccchhHHHh---hcc-cceEecCCCCh-hhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC
Q 002154 305 KLLITTRKETVALI---MGS-TQVISVNELSE-MECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG 368 (959)
Q Consensus 305 ~iivTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 368 (959)
.||.||........ .+. ...+.+++++. ++...++.+.. . .. .+....|++.+.|
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 46667766543322 122 45788999988 66666665531 0 11 2334578888877
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.06 E-value=1.8e-05 Score=84.79 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=91.0
Q ss_pred ccccchhHHHHHHHHHhccC---------CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 002154 166 EIFGRQKEKNELVNRLLCES---------SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDE 236 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 236 (959)
.++|.+..++.|.+++.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58899988888877654210 001234567899999999999999988774211111111123333310
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC---------CcCCchhHhhhcCCCCCCCEEE
Q 002154 237 FRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE---------DYGKWEPFYNCLKSSPHGSKLL 307 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii 307 (959)
.+. .... ......+...+... +.-+|++|++..- .......+...+.....+..||
T Consensus 109 ---------~l~-~~~~-g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 109 ---------DLV-GQYI-GHTAPKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ---------GTC-CSST-TCHHHHHHHHHHHH----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ---------Hhh-hhcc-cccHHHHHHHHHhc----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 111 0000 01112222223222 3359999999632 2233345555565555677888
Q ss_pred EeccchhHHHh-------hcc-cceEecCCCChhhhHHHHHHhhc
Q 002154 308 ITTRKETVALI-------MGS-TQVISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 308 vTtr~~~v~~~-------~~~-~~~~~l~~L~~~~~~~lf~~~~~ 344 (959)
+||........ ... ...+.+.+++.++-.+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 88865432111 111 36889999999999999987764
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.06 E-value=7.8e-06 Score=80.11 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=38.1
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++||+.+++++.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3456789999999999999999874
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=7.5e-05 Score=80.17 Aligned_cols=188 Identities=14% Similarity=0.091 Sum_probs=103.1
Q ss_pred cccccchhHHHHHHHHHhccC------CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCES------SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..+++|.+.+..+. .......+.|.++|++|+|||+||+.+++. ....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 478999999999988773110 001233567899999999999999999883 33222 223221 1
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-------CC----chhHhhhcC---CCCCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-------GK----WEPFYNCLK---SSPHGS 304 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-------~~----~~~l~~~l~---~~~~gs 304 (959)
+ .... ....+.....+.......++.+|+||++..-.. .. ...+...+. ....+.
T Consensus 87 l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 L----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp H----HTTT-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred H----hhcc-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 1100 011122222222222445778999999964211 11 122333332 223455
Q ss_pred EEEEeccchhH-HHhh--cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHHHH
Q 002154 305 KLLITTRKETV-ALIM--GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTIAS 378 (959)
Q Consensus 305 ~iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 378 (959)
.||.||..... ...+ .-...+.+...+.++-.++|...+........ ......|++.+.| .+-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56667665321 1111 12356788888999999999887643221111 2234578888887 4555554443
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=2.9e-05 Score=84.21 Aligned_cols=179 Identities=9% Similarity=0.070 Sum_probs=103.3
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 243 (959)
..++|.+..++.|...+... +...+.++|+.|+||||+|+.+++... ...+. ...-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 45789988888888888532 223389999999999999999987311 11111 1122222222121111 111
Q ss_pred HHHhCCCCCcccccHHHHHHHHHHH--HhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchh-HHH-hh
Q 002154 244 IEALKPGSAKELVEFQSLMQHIQEY--VVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKET-VAL-IM 319 (959)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~l~~~--~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~ 319 (959)
+.. +.+. ...+.+-++|+|++..........+...+......+++|++|.... +.. ..
T Consensus 97 i~~------------------~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 97 IKD------------------FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp HHH------------------HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH------------------HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 111 1110 0123467899999966554455556666655455667777765432 111 11
Q ss_pred cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 320 GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
.....+.+.+++.++..+.+.+.+....- ... .+..+.|++.++|.+--+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 22457899999999988888776532111 111 234557888899988744
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=6.7e-06 Score=76.78 Aligned_cols=113 Identities=18% Similarity=0.104 Sum_probs=69.4
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV-KRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.++|+...++++.+.+..... ...-|.|+|+.|+|||++|+.+++.... ...| + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 578999999999988754321 2334789999999999999999885211 1222 3 555542211
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
... ...+... +.-.|+||++..-.......+...+.......++|.||..
T Consensus 66 -----------~~~---~~~~~~a----~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -----------PQL---NDFIALA----QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------SCH---HHHHHHH----TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------hhh---hcHHHHc----CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111 1112221 2246899999776555555666666555556678888764
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.96 E-value=6.8e-05 Score=81.71 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=102.0
Q ss_pred cccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..+++|.+.+..... ......+.|.|+|+.|+|||+||+.+++. .... .+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 4689999999999887743100 00124567899999999999999999873 2222 23444432110
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-----------CCchhHhhhcCCC----CCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-----------GKWEPFYNCLKSS----PHG 303 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~g 303 (959)
.. ..........+.......++.+|+||++..... .....+...+... ..+
T Consensus 156 ------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 001111222222221345678999999843110 0112333333321 224
Q ss_pred CEEEEeccch-hHHHh-hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHHHH
Q 002154 304 SKLLITTRKE-TVALI-MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTIAS 378 (959)
Q Consensus 304 s~iivTtr~~-~v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 378 (959)
..||.||... .+... ... ...+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555566542 11111 112 346788888888888888776632211111 2345578888888 5556665544
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=7.5e-05 Score=80.38 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=87.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
....+.|+|++|+||||||+.+++. ....-...++++. ..+...+...+... ... .+... .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~----~~~~~-~ 96 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------TIN----EFRNM-Y 96 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT------CHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC------cHH----HHHHH-h
Confidence 3467889999999999999999984 2111112345543 23344444443200 111 12222 2
Q ss_pred cCcEEEEEeccCCCCCc--CCchhHhhhcCC-CCCCCEEEEeccch---------hHHHhhcccceEecCCCChhhhHHH
Q 002154 271 EGEKFLLVLDDVWNEDY--GKWEPFYNCLKS-SPHGSKLLITTRKE---------TVALIMGSTQVISVNELSEMECWSV 338 (959)
Q Consensus 271 ~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 338 (959)
. +.-+|++||+..... ...+.+...+.. ...|..||+||... .+...+.....+.+.+ +.++..++
T Consensus 97 ~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 97 K-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp H-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred c-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 2 356999999965332 112233333322 12456788887642 1222223335789999 99999999
Q ss_pred HHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHH
Q 002154 339 FESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAA 373 (959)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai 373 (959)
+...+..... ..+ .+....|++.+ |..-.+
T Consensus 175 l~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 175 IKEKLKEFNL-ELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHTTC-CCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHHhcCC-CCC---HHHHHHHHHhC-CCHHHH
Confidence 9887643221 112 34455788888 766543
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=0.00024 Score=76.03 Aligned_cols=189 Identities=16% Similarity=0.092 Sum_probs=100.8
Q ss_pred cccccchhHHHHHHHHHhcc----C--CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCE----S--SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.++.++.|.+.+..+ . .......+.|.++|++|+|||+||+.+++... ...| +.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHH----
Confidence 47899999888888776321 0 00122347789999999999999999998420 1111 233333211
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-------CCc----hhHhhhcCC---CCCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-------GKW----EPFYNCLKS---SPHGS 304 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs 304 (959)
... ...... ....+.......++.+|++|++..... ... ..+...+.. ...+.
T Consensus 84 -----------~~~-~g~~~~-~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 -----------SKW-LGESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -----------CSS-CCSCHH-HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -----------hhh-hhHHHH-HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 000 011112 222222221446788999999954210 001 112222222 12344
Q ss_pred EEEEeccchh-HHHh-h-cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCc-hhHHHHHHH
Q 002154 305 KLLITTRKET-VALI-M-GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGL-PLAAKTIAS 378 (959)
Q Consensus 305 ~iivTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~~~ 378 (959)
.||.||.... +... . .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.+..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555665431 1111 1 22357788888888888888877632211111 23345788999886 545655544
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.90 E-value=9.2e-05 Score=80.49 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=100.1
Q ss_pred cccccchhHHHHHHHHHhcc----C--CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCE----S--SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++. ....| +.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46999999999998876321 0 001123456889999999999999999984 32222 223221 1
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC-----------CchhHhhhcC---CCCCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG-----------KWEPFYNCLK---SSPHGS 304 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs 304 (959)
+. .... + .. +.....+.......++.+|+||++...... ....+...+. ....+.
T Consensus 120 l~----~~~~-g-----~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 120 LV----SKWM-G-----ES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HH----SCC---------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred Hh----hhhc-c-----hH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 11 1100 0 11 122222222214457899999999643211 0122322222 122345
Q ss_pred EEEEeccchh-HHHh-h-cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHHHH
Q 002154 305 KLLITTRKET-VALI-M-GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTIAS 378 (959)
Q Consensus 305 ~iivTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 378 (959)
.||.||.... +... . .-...+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+..
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 1111 1 22357788888999888998877642211111 2234578888888 4545555443
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=1.6e-06 Score=82.34 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCCccceeeeccccccccccccccccccccc----CcccceeeeecCCCCcCCC-cCCCCCCCcceEEEccCcchHH
Q 002154 866 AFPKLRRLRFVCMEELEEWDCGTAIKGEIII----MARLSSLSIVYCPKLKALP-DHLLQKSTLQGFGIYHCPILEE 937 (959)
Q Consensus 866 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~----~~~L~~L~i~~C~~L~~lp-~~l~~l~~L~~L~l~~c~~l~~ 937 (959)
.+++|+.|+|++|.++++.... .+.. .++|++|+|++|+++++-- ..+.++++|++|+|++||.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5666777777776666554321 1112 3467777777777666410 1234567788888888877654
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3.2e-06 Score=80.37 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=62.5
Q ss_pred cccceeeecCccCC-CcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeecccccccccccc
Q 002154 809 TNLRDLSLNWWRNC-EHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCG 887 (959)
Q Consensus 809 ~~L~~L~L~~~~~~-~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~ 887 (959)
.+|+.|++++|... ..+..+..+++|+.|+|++|..+++-+........ ...++|+.|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------NLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------HHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------cccCCCCEEEcCCCCcCCHHHHH
Confidence 36788888888521 23556678888888888888876554333221100 01357999999999888764331
Q ss_pred cccccccccCcccceeeeecCCCCcC
Q 002154 888 TAIKGEIIIMARLSSLSIVYCPKLKA 913 (959)
Q Consensus 888 ~~~~~~~~~~~~L~~L~i~~C~~L~~ 913 (959)
....+++|++|++++|+.++.
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCC
T ss_pred -----HHhcCCCCCEEECCCCCCCCc
Confidence 245689999999999988875
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.88 E-value=0.00024 Score=75.34 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=98.7
Q ss_pred cccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..++.+.+.+..+.. .-....+.+.|+|++|+||||+|+.+++. ....| +.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhh---
Confidence 4699999999999887743110 00123567899999999999999999883 22222 3344432110
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC-------Cch----hHhhhc---CCC--CC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG-------KWE----PFYNCL---KSS--PH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~-------~~~----~l~~~l---~~~--~~ 302 (959)
.. ..........+.......++.+|++|++...... .-. .+...+ +.. +.
T Consensus 93 ------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0111222222222224456789999999542110 011 122221 111 12
Q ss_pred CCEEEEeccchh-HHHhh--cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHH
Q 002154 303 GSKLLITTRKET-VALIM--GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIA 377 (959)
Q Consensus 303 gs~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 377 (959)
+..||.||.... +.... .-...+.+...+.++-.+++...+........ .+....|++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345666666532 11110 11346777777777777777766532211111 2344578888888775 554443
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.87 E-value=2.4e-06 Score=93.74 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=63.7
Q ss_pred CCCccEEEecCCcchhhh-hhhhHHhc-cCCcccEEEccccCcccccccccc--ccccccccCCccEEeeccCCCcccc-
Q 002154 557 LRGLRSLLVESDEYSWFS-EVLPQLFD-KLTCLRALKLEVRQPWWCQNFIKD--IPENIEKLLHLKYLSLAHQEAIERL- 631 (959)
Q Consensus 557 ~~~LrsL~~~~~~~~~~~-~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~--lp~~i~~l~~L~~L~L~~~~~i~~l- 631 (959)
++.|++|.++++...... ..+...+. ..++|++|+|++ +.+.. +......+.+|++|+|++|. ++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-------n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-------CQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-------CCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-------CCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 356777777777642211 11222233 336888888887 33322 11222345678888888887 6432
Q ss_pred ----chhh-ccCCCCcEEecCCCcCCcc-----cchhhhccccCCeeecCCc
Q 002154 632 ----PEAL-CELYNLERLNVSGCSHLRE-----LPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 632 ----p~~i-~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 673 (959)
...+ ...++|++|+|++|. +.. ++..+..+++|++|++++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 2222 245778888888876 533 4555667788888888877
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=5.6e-06 Score=89.97 Aligned_cols=88 Identities=15% Similarity=0.048 Sum_probs=44.8
Q ss_pred HhccCCcccEEEccccCcccccc---ccccccccccccCCccEEeeccCCCccccchhhccCCCCcEEecCCCcCCcc-c
Q 002154 580 LFDKLTCLRALKLEVRQPWWCQN---FIKDIPENIEKLLHLKYLSLAHQEAIERLPEALCELYNLERLNVSGCSHLRE-L 655 (959)
Q Consensus 580 ~~~~~~~Lr~L~L~~~~~~~~~~---~~~~lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-l 655 (959)
...++++|+.|.+.+...-.|.. ....++..+..+++|+.|+|++|..+ .+|. + .+++|++|+|..|. +.. -
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHH
Confidence 35567788888886521100000 01123344556677777777766322 3444 3 36677777776554 321 1
Q ss_pred chhhh--ccccCCeeecC
Q 002154 656 PRGIG--KLRKLMYLYNA 671 (959)
Q Consensus 656 p~~i~--~L~~L~~L~l~ 671 (959)
...+. .+++|++|++.
T Consensus 210 l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHccCCCCcEEEEe
Confidence 12222 56666666664
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=1.2e-05 Score=82.59 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=53.8
Q ss_pred hhhhhhHHhccCCcccEEEccccCcccccccccc---ccccccccCCccEEeeccCCCccccchhhccCC--CCcEEecC
Q 002154 573 FSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKD---IPENIEKLLHLKYLSLAHQEAIERLPEALCELY--NLERLNVS 647 (959)
Q Consensus 573 ~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~---lp~~i~~l~~L~~L~L~~~~~i~~lp~~i~~L~--~L~~L~l~ 647 (959)
+...++....++++|+.|+|++ |.+.. +|..+..+++|++|+|++|. +..+. .+..+. +|++|+|+
T Consensus 158 ~~~~l~i~~~~l~~L~~L~Ls~-------N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 158 MAATLRIIEENIPELLSLNLSN-------NRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEECTT-------SCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECT
T ss_pred HHHHHHHHHhhCCCCCEEECCC-------CCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEcc
Confidence 3333333345677888888887 44443 34556677888888888777 66663 244444 77778877
Q ss_pred CCcCCcccc-------hhhhccccCCeee
Q 002154 648 GCSHLRELP-------RGIGKLRKLMYLY 669 (959)
Q Consensus 648 ~~~~l~~lp-------~~i~~L~~L~~L~ 669 (959)
+|+--..+| ..+..+++|+.|+
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 776333343 1245667777665
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.00082 Score=74.42 Aligned_cols=284 Identities=10% Similarity=0.072 Sum_probs=161.6
Q ss_pred hhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch-hhccCCCCcEEecCCCcCCcc
Q 002154 577 LPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE-ALCELYNLERLNVSGCSHLRE 654 (959)
Q Consensus 577 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~ 654 (959)
-...|.++.+|+.+.|.. + +..+++ .+.++.+|+.++|..+ ++.++. .+.++.+|+.+.+..+ +..
T Consensus 63 g~~AF~~c~~L~~i~lp~-------~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~ 130 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-------T-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKS 130 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-------T-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCE
T ss_pred HHHHhhCCCCceEEEeCC-------C-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eee
Confidence 344588999999999975 3 666644 5788999999999754 667765 5678888888777642 444
Q ss_pred cch-hhhccccCCeeecCCccccccCC-ccCcCCCCCCccCceeecCccCCCCCccccccCCCCCCceEeCCCCCCChhh
Q 002154 655 LPR-GIGKLRKLMYLYNAGTDSLRYLP-AGIDELIRLRSVRKFVVGGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGE 732 (959)
Q Consensus 655 lp~-~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~ 732 (959)
+.. .+.....+........ ..+. ..+.++++|+.+.+-... . ...-..+..+.+|+.+.+.. ++. .
T Consensus 131 i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~-~---~I~~~~F~~c~~L~~i~l~~--~~~---~ 198 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSM-E---TLHNGLFSGCGKLKSIKLPR--NLK---I 198 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTC-C---EECTTTTTTCTTCCBCCCCT--TCC---E
T ss_pred ecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCcc-c---eeccccccCCCCceEEEcCC--Cce---E
Confidence 433 3444433333322222 2222 236667777766542110 0 11112234455555555432 111 1
Q ss_pred hHhhcccCCCCCCceEEeecCCCCCCccccccCCCchhhHHHHhhhCCCCCCCceEEEeeeCCCCCCCCcChhhcccccc
Q 002154 733 ARRAELEKKKNLFDLDLHFGHSRDGDEEQAGRRENEEDKDERLLEALGPPPNLKKLVIDEYRGRRNVVPINWIMSLTNLR 812 (959)
Q Consensus 733 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~ 812 (959)
.....+.++..|+.+.+...... +-.......+|+.+.+.... .. +....+..+.+|+
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~~~-------------------i~~~~~~~~~l~~i~ip~~~-~~--i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSLYY-------------------LGDFALSKTGVKNIIIPDSF-TE--LGKSVFYGCTDLE 256 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTCCE-------------------ECTTTTTTCCCCEEEECTTC-CE--ECSSTTTTCSSCC
T ss_pred eCchhhccccccceeecCCCceE-------------------eehhhcccCCCceEEECCCc-ee--cccccccccccce
Confidence 11234556777777766433200 01122334578888875432 11 2244556788999
Q ss_pred eeeecCccCCCcCCCCCCcCCCcceeecCccCceEeCccccCCCCCCCCccccCCCccceeeeccccccccccccccccc
Q 002154 813 DLSLNWWRNCEHLPPLGKLPSLEDLWIQGMKSVKRVGNEFLGVESDTDGSSVIAFPKLRRLRFVCMEELEEWDCGTAIKG 892 (959)
Q Consensus 813 ~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 892 (959)
.+.+..+...-.-..+..++.|+.+..... .++...+ ..+.+|+.+.+.+ +++.+...
T Consensus 257 ~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F-----------~~~~~L~~i~l~~--~i~~I~~~----- 314 (394)
T 4fs7_A 257 SISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTF-----------YGCSSLTEVKLLD--SVKFIGEE----- 314 (394)
T ss_dssp EEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTTTT-----------TTCTTCCEEEECT--TCCEECTT-----
T ss_pred eEEcCCCcceeeccccccccccceeccCce----eeccccc-----------ccccccccccccc--ccceechh-----
Confidence 999876522111224556777777766431 2443322 2567888888864 45554431
Q ss_pred ccccCcccceeeeecCCCCcCCCc-CCCCCCCcceEEEc
Q 002154 893 EIIIMARLSSLSIVYCPKLKALPD-HLLQKSTLQGFGIY 930 (959)
Q Consensus 893 ~~~~~~~L~~L~i~~C~~L~~lp~-~l~~l~~L~~L~l~ 930 (959)
.+..+++|+.++|.+ .++.++. .+.+|++|+.+.+.
T Consensus 315 aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 355678899998864 4666653 56678888888774
No 196
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=1.6e-05 Score=87.05 Aligned_cols=137 Identities=16% Similarity=0.067 Sum_probs=68.4
Q ss_pred CcEEEEEeeeccCCCCccccccccCCCCCccEEEecCCcchhhh-hhhhHHh-ccCCcccEEEccccCcccccccccccc
Q 002154 531 TKILHLMLTLYKGASVPIPIWDNVKGLRGLRSLLVESDEYSWFS-EVLPQLF-DKLTCLRALKLEVRQPWWCQNFIKDIP 608 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~-~~~~~~~-~~~~~Lr~L~L~~~~~~~~~~~~~~lp 608 (959)
..++.+.+..+.+.. .........+++|+.|++++|...... ..+...+ ...+.|+.|+|++|.+- ......++
T Consensus 101 ~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT--AAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH--HHHHHHHH
T ss_pred CCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC--hHHHHHHH
Confidence 355666665554431 000000112445677777766532110 1112222 23566777777762210 00112244
Q ss_pred ccccccCCccEEeeccCCCccc-----cchhhccCCCCcEEecCCCcCCcc-----cchhhhccccCCeeecCCc
Q 002154 609 ENIEKLLHLKYLSLAHQEAIER-----LPEALCELYNLERLNVSGCSHLRE-----LPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 609 ~~i~~l~~L~~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 673 (959)
..+..+++|++|+|++|. ++. ++..+...++|++|+|++|. +.. ++..+...++|++|++++|
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 445566667777777766 542 34555566677777777665 432 3344455566777777666
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=1.1e-05 Score=87.79 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=79.0
Q ss_pred CcEEEEEeeeccCCC-Cc----cccccccCCCCCccEEEecCCcc-----hhhh-hhhhHHhccCCcccEEEccccCccc
Q 002154 531 TKILHLMLTLYKGAS-VP----IPIWDNVKGLRGLRSLLVESDEY-----SWFS-EVLPQLFDKLTCLRALKLEVRQPWW 599 (959)
Q Consensus 531 ~~~r~l~~~~~~~~~-~~----~~~~~~~~~~~~LrsL~~~~~~~-----~~~~-~~~~~~~~~~~~Lr~L~L~~~~~~~ 599 (959)
.+++.+.+....+.. .. ..+...+..+++|++|.+.+... +++. ..+...+..+++|+.|+|++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g----- 181 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG----- 181 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC-----
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC-----
Confidence 556777766544321 00 01122234678999999865421 1111 12556678899999999998
Q ss_pred cccccccccccccccCCccEEeeccCCCccc-cchhhc--cCCCCcEEecCCCc-------CCcccchhh--hccccCCe
Q 002154 600 CQNFIKDIPENIEKLLHLKYLSLAHQEAIER-LPEALC--ELYNLERLNVSGCS-------HLRELPRGI--GKLRKLMY 667 (959)
Q Consensus 600 ~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~-lp~~i~--~L~~L~~L~l~~~~-------~l~~lp~~i--~~L~~L~~ 667 (959)
+.-..++. +. +++|++|+|..|. +.. -...+. ++++|++|+|+.+. .+..+...+ ..+++|++
T Consensus 182 --~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 182 --TNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp --CBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred --CCCceecc-cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 21123444 43 8899999999887 432 222343 79999999996321 122222222 24678888
Q ss_pred eecCCc
Q 002154 668 LYNAGT 673 (959)
Q Consensus 668 L~l~~~ 673 (959)
|.+.+|
T Consensus 257 L~L~~~ 262 (362)
T 2ra8_A 257 LGIVDA 262 (362)
T ss_dssp EEEESC
T ss_pred EeCCCC
Confidence 888776
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=4.5e-05 Score=75.79 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA 252 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 252 (959)
.++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+..... .
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~-~-- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQ-D-- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhc-c--
Confidence 44555556543321 112268899999999999999999984 33333445666543 34444443322 1
Q ss_pred cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchh--Hhh-hcCCC-CCCCEEEEeccc
Q 002154 253 KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEP--FYN-CLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 253 ~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 312 (959)
.........+.. .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~------~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK------VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH------SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC------CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112222333222 2399999997644444432 222 22211 235578888874
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.70 E-value=0.00043 Score=76.44 Aligned_cols=188 Identities=16% Similarity=0.087 Sum_probs=98.0
Q ss_pred ccccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 164 ESEIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
-.+++|.+..++.|.+++..... ......+.|.|+|+.|+|||+||+.+++. ....| +.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhcc-
Confidence 35799999999999988732110 00123467899999999999999999873 22222 33333321110
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-------cCCch----hHhhhcC---C-CCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-------YGKWE----PFYNCLK---S-SPH 302 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-------~~~~~----~l~~~l~---~-~~~ 302 (959)
. . + .....+...+... ...++.+|+||++.... ..... .+...+. . ...
T Consensus 188 -~-------~--g-----~~~~~~~~~~~~a-~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 -Y-------V--G-----EGEKLVRALFAVA-RELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------CHHHHHHHHHHH-HHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred -c-------c--c-----hHHHHHHHHHHHH-HhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 0 0111112222222 33466799999995320 01111 1222221 1 122
Q ss_pred CCEEEEeccchh-HHHh-hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh-HHHHHH
Q 002154 303 GSKLLITTRKET-VALI-MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL-AAKTIA 377 (959)
Q Consensus 303 gs~iivTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 377 (959)
...||.||.... +... ... ...+.+...+.++-.+++...+....... ..+....|++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345555665421 1111 122 24688888999999999887764322111 12344578888888544 555443
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00046 Score=75.77 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=92.4
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+..+-. -+-...+-|.++|++|+|||+||+.+++. ...+| +.|+.++-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 4688999888888776642110 02345677899999999999999999984 33333 3344332110
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCC--------CC--cCC----chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWN--------ED--YGK----WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~--------~~--~~~----~~~l~~~l~~--~~ 301 (959)
.. -......+...+... -...+.+|++|++.. .. ... ...+...+.. ..
T Consensus 245 -------------~~-~Ge~e~~ir~lF~~A-~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 -------------KY-LGEGPRMVRDVFRLA-RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------SS-CSHHHHHHHHHHHHH-HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------cc-cchhHHHHHHHHHHH-HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 00 011112222222222 456789999999842 00 001 1122222221 23
Q ss_pred CCCEEEEeccchh-HHHh-hc--c-cceEecCCCChhhhH-HHHHHhhccCCCCCCCchHHHHHHHHHHhcCCc
Q 002154 302 HGSKLLITTRKET-VALI-MG--S-TQVISVNELSEMECW-SVFESLAFFGKSMQERENLEKIGWEIVRKCKGL 369 (959)
Q Consensus 302 ~gs~iivTtr~~~-v~~~-~~--~-~~~~~l~~L~~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 369 (959)
.+..||.||.... +... .. . ...+.+..++..++. .+|..+... ......-++. .|++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl~----~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADLD----SLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCHH----HHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCHH----HHHHHCCCC
Confidence 3455666776532 1111 11 1 346778767655554 455544422 1112222344 677788774
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00012 Score=77.25 Aligned_cols=148 Identities=11% Similarity=-0.000 Sum_probs=92.4
Q ss_pred cchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc-cc-cccceeEEEEeCC-CCCHHHHHHHHHH
Q 002154 169 GRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS-VK-RNFQKRIWVCVSE-PFDEFRIARAIIE 245 (959)
Q Consensus 169 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~v~~-~~~~~~~~~~i~~ 245 (959)
|-++.++.|...+... +.....++|+.|+||||+|+.+.+... .. .+.+ ..++..+. ...+ +..+++++
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~i-d~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGI-DDIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCH-HHHHHHHH
Confidence 3445566777776432 367899999999999999999876310 11 1223 23444332 1222 22233444
Q ss_pred HhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccch-hHHHhhcccce
Q 002154 246 ALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKE-TVALIMGSTQV 324 (959)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~ 324 (959)
.+. .....+++-++|+|++...+......++..+......+.+|++|.+. .+...+..- .
T Consensus 73 ~~~------------------~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~ 133 (305)
T 2gno_A 73 FLN------------------YSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-V 133 (305)
T ss_dssp HHT------------------SCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-S
T ss_pred HHh------------------hccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-e
Confidence 332 11123567788999998776667777888887766778888776543 333333334 8
Q ss_pred EecCCCChhhhHHHHHHhh
Q 002154 325 ISVNELSEMECWSVFESLA 343 (959)
Q Consensus 325 ~~l~~L~~~~~~~lf~~~~ 343 (959)
+++.++++++..+.+.+.+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.68 E-value=0.00071 Score=75.84 Aligned_cols=189 Identities=17% Similarity=0.098 Sum_probs=99.6
Q ss_pred cccccchhHHHHHHHHHhcc----C--CcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCE----S--SKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..++.|.+.+..+ . .......+.|.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 56899999999998877321 0 001124577899999999999999999984 2 112233333221
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-------CCchh----HhhhcCC---CCCCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-------GKWEP----FYNCLKS---SPHGS 304 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-------~~~~~----l~~~l~~---~~~gs 304 (959)
+.... .+ . .......+.... ...++.+|+||++..... ..... +...+.. ...+.
T Consensus 204 l~~~~---~g--~--~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 LVSKW---LG--E--SEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ---------------CCCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred HHhhh---cc--h--HHHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11111 11 1 111222222222 335678999999964210 11112 2222222 13455
Q ss_pred EEEEeccchhH-HHh-hcc-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHHHHH
Q 002154 305 KLLITTRKETV-ALI-MGS-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKTIAS 378 (959)
Q Consensus 305 ~iivTtr~~~v-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~~~~ 378 (959)
.||.||..... ... ... ...+.+...+.++-..+|...+........ ......|++.+.| .+-.|..+..
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667754321 111 112 346778888888888888776632111111 2334478888888 4545554443
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.68 E-value=4.6e-05 Score=93.23 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=80.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccc---cccc-c-eeEEEEeCCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSV---KRNF-Q-KRIWVCVSEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~-~~~wv~v~~~~~~~~~ 239 (959)
..++||+++++++++.+... ....+.++|++|+||||+|+.+++...- .... . ..++++++.-.
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----- 238 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----- 238 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh-----
Confidence 35899999999999998643 2344689999999999999999874210 0011 1 12333332110
Q ss_pred HHHHHHHhCCCCCcccccHH-HHHHHHHHHHhc-CcEEEEEeccCCCCC--------cCCchhHhhhcCCCCCCCEEEEe
Q 002154 240 ARAIIEALKPGSAKELVEFQ-SLMQHIQEYVVE-GEKFLLVLDDVWNED--------YGKWEPFYNCLKSSPHGSKLLIT 309 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~-~~~~~l~~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 309 (959)
. +... ..... .+...+... .. +++.+|++|++..-. .+....+...+.. .+..+|.+
T Consensus 239 -----~----g~~~-~g~~~~~l~~~~~~~-~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~a 305 (854)
T 1qvr_A 239 -----A----GAKY-RGEFEERLKAVIQEV-VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGA 305 (854)
T ss_dssp -----------------CHHHHHHHHHHHH-HTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEE
T ss_pred -----c----cCcc-chHHHHHHHHHHHHH-HhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEe
Confidence 0 0000 01112 222222222 22 468899999996422 1111223333332 23446655
Q ss_pred ccchhHHH-----h-hcccceEecCCCChhhhHHHHHHh
Q 002154 310 TRKETVAL-----I-MGSTQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 310 tr~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf~~~ 342 (959)
|....... . ......+.+.+++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 55433211 1 122446899999999999888644
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=0.00047 Score=73.04 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=98.7
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.+++|.+..+++|.+++...-. -+-...+.|.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4689999988888887653200 01124567899999999999999999984 3222 23332 22
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC----------cCC----chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED----------YGK----WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~ 301 (959)
++.... .+ .. . ..+...+... ....+.+|++|++.... ... ...+...+.. ..
T Consensus 84 ~l~~~~---~g-~~---~---~~~~~~f~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 84 ELLTMW---FG-ES---E---ANVREIFDKA-RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHH---HT-TC---T---THHHHHHHHH-HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHhhh---cC-ch---H---HHHHHHHHHH-HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 232221 11 11 1 1122223332 34568999999985310 001 1333433332 12
Q ss_pred CCCEEEEeccchh-HHHh-hc--c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhH
Q 002154 302 HGSKLLITTRKET-VALI-MG--S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLA 372 (959)
Q Consensus 302 ~gs~iivTtr~~~-v~~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 372 (959)
.+..||.||.... +... .. . ...+.+...+.++-.+++...+..... ....++. .+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 3456677776542 2111 12 1 347889999998888888776532211 1222333 466677776643
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.63 E-value=1.9e-05 Score=73.38 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIE 245 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 245 (959)
.++|++..++++.+.+..... ...-|.|+|+.|+|||++|+.+++... -++.+....-....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh------
Confidence 588999999998888754321 223477999999999999999998422 22322211100000
Q ss_pred HhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC-CCCCEEEEeccc
Q 002154 246 ALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 312 (959)
....+ .. . +.-.|+||++..........+...+... ..+.++|+||..
T Consensus 67 ---------------~~~~~-~~-a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELL-QK-A--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHH-HH-T--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHH-Hh-C--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111 11 1 2346889999765544444455554433 345778888763
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=3.8e-05 Score=74.73 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP 249 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 249 (959)
..+.++.+.+++..-. ......+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555554322 1234689999999999999999998842211122 223443 34455554444321
Q ss_pred CCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCch--hHhhhcCCC-CCCCEEEEeccc
Q 002154 250 GSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWE--PFYNCLKSS-PHGSKLLITTRK 312 (959)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 312 (959)
.... ..... +. +.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~------~~~~~-----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT------KFLKT-----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS------HHHHH-----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH------HHHHH-----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1110 11111 22 4568999999743333443 233333221 246778888864
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=0.0001 Score=71.96 Aligned_cols=116 Identities=15% Similarity=0.059 Sum_probs=76.7
Q ss_pred cCCCCCccEEEecCC-cchhh-hhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCccc-
Q 002154 554 VKGLRGLRSLLVESD-EYSWF-SEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER- 630 (959)
Q Consensus 554 ~~~~~~LrsL~~~~~-~~~~~-~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~- 630 (959)
+...+.|++|.+.++ ..... ...+...+...+.|++|+|+++.+- ......+...+...+.|++|+|++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~--~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--DPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC--HHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC--hHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 446788888988887 54211 1124445677788999999883320 00112244556666789999999887 664
Q ss_pred ----cchhhccCCCCcEEec--CCCcCCcc-----cchhhhccccCCeeecCCc
Q 002154 631 ----LPEALCELYNLERLNV--SGCSHLRE-----LPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 631 ----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 673 (959)
+...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5667777888999999 6665 433 3445566688888888877
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.61 E-value=0.002 Score=69.36 Aligned_cols=178 Identities=17% Similarity=0.205 Sum_probs=92.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
..++|.+..++.+...+..... .......+.|+|+.|+||||||+.+++. ....|. .....-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 4688988877777766643210 1123467899999999999999999983 222221 1111110111
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC------------------CCCEE
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP------------------HGSKL 306 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 306 (959)
..+...+ .. +. ++-++++|++..-.....+.+...+.... ....+
T Consensus 91 --------------~~l~~~~-~~-~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 91 --------------GDMAAIL-TS-LE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp --------------HHHHHHH-HH-CC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred --------------HHHHHHH-HH-cc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111111 11 21 23466777774432212222322221110 01223
Q ss_pred E-EeccchhHHHhhc-c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHHH
Q 002154 307 L-ITTRKETVALIMG-S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTIA 377 (959)
Q Consensus 307 i-vTtr~~~v~~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 377 (959)
+ .|++...+...+. . ...+.+++.+.++-.+++.+.+..... ....+.+..|++++.|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 2 2444332221111 1 235789999999999999887642211 1123456789999999997654443
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00091 Score=72.24 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=97.8
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|.|||.||+.+++. ....| +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh---
Confidence 4688999888888776532100 02334577889999999999999999984 33333 334433211
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-------cC-C------chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-------YG-K------WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-------~~-~------~~~l~~~l~~--~~ 301 (959)
... -......+...+... -...+.+|++|++..-. .. . ...+...+.. ..
T Consensus 220 ------------sk~-vGese~~vr~lF~~A-r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 220 ------------QKY-IGEGSRMVRELFVMA-REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp ------------CSS-TTHHHHHHHHHHHHH-HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ------------ccc-cchHHHHHHHHHHHH-HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 000 011111222222222 45678999999985421 00 0 1122222322 22
Q ss_pred CCCEEEEeccchhH-HHh-h---cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETV-ALI-M---GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v-~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+..||.||..... ... . .-...+.++.-+.++-.++|..+..... ....-++. .|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCHH----HHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHCCCCC
Confidence 34456667765322 111 1 2256888888888888888877653221 11222344 6788888754
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.60 E-value=0.00021 Score=76.41 Aligned_cols=137 Identities=11% Similarity=0.180 Sum_probs=74.6
Q ss_pred ccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.++|.+..++.+...+..... ........+.++|+.|+|||++|+.+++. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 578999998888888764311 01223468999999999999999999883 22222224555554432221 1111
Q ss_pred HHHHhCCCCC-cccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEec
Q 002154 243 IIEALKPGSA-KELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITT 310 (959)
Q Consensus 243 i~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 310 (959)
+ ++.... ........+...+. ....-+|+||++..........+...+..+. .++.+|+||
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~----~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR----RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH----HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred h---cCCCCccccccccchHHHHHH----hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1 221110 01111112222222 2345699999997665555555655554321 233477777
Q ss_pred cc
Q 002154 311 RK 312 (959)
Q Consensus 311 r~ 312 (959)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=0.00021 Score=80.72 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=101.2
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
..++|.+..+++|.+++..... -+....+-|.|+|++|+|||++|+.+++. ....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 3589999999999887753200 00124566899999999999999999873 32222 333321
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-----------CCchhHhhhcCC--CCCCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-----------GKWEPFYNCLKS--SPHGS 304 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs 304 (959)
++...+. ......+...+... ..+++.+|+||++..-.. .....+...+.. ...+.
T Consensus 273 ----~l~~~~~------g~~~~~~~~~f~~A-~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 ----EIMSKLA------GESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHTSCT------THHHHHHHHHHHHH-HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----Hhhhhhc------chhHHHHHHHHHHH-HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 1111110 11112233333333 556788999999832110 011223333332 22344
Q ss_pred EEEEeccchh-HHHhh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCc-hhHHHHH
Q 002154 305 KLLITTRKET-VALIM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGL-PLAAKTI 376 (959)
Q Consensus 305 ~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~ 376 (959)
.||.||.... +...+ .-...+.+...+.++-.+++..++.... ......+. ++++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~l~----~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDLE----QVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCCHH----HHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-CcchhhHH----HHHHHccCCcHHHHHHH
Confidence 5666666542 21111 1134688999999999999988763221 12222333 577777774 4444444
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.56 E-value=0.00014 Score=82.14 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=78.9
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCccccccc-----ceeEEEEeCCCCCHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF-----QKRIWVCVSEPFDEFRIA 240 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~v~~~~~~~~~~ 240 (959)
.++||+.+++++.+.+... ...-+.|+|++|+|||++|+.+++. +...+ ...-++.+.-.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC----------
T ss_pred CccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-------
Confidence 5999999999999999643 2345679999999999999999873 21111 11111211111
Q ss_pred HHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHH---
Q 002154 241 RAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL--- 317 (959)
Q Consensus 241 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~--- 317 (959)
.... +. .......+...+ -..++.+|++|. ..+....+...+.. ...++|.+|.......
T Consensus 246 ----~~~~-g~--~e~~~~~~~~~~----~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 ----TKYR-GE--FEDRLKKVMDEI----RQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp --------------CTTHHHHHHHH----HTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred ----cccc-ch--HHHHHHHHHHHH----HhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhh
Confidence 0000 00 001122222222 335678999991 12222223333332 2356666665443211
Q ss_pred ----hhcccceEecCCCChhhhHHHHHHhh
Q 002154 318 ----IMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 318 ----~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
.......+.+.+.+.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11234579999999999999998754
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0012 Score=72.51 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=97.8
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|.|||+||+.+++. ....| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 4678999888888776543110 02345678999999999999999999984 33333 3344332110
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC------cCC--------chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED------YGK--------WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~ 301 (959)
.. ....+.....+....-...+.+|++|++...- ... ...++..+.. ..
T Consensus 254 -------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 00 01111222222222245678999999985310 000 1123333322 23
Q ss_pred CCCEEEEeccchhHHH-hh-c---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETVAL-IM-G---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+..||.||....... .+ . -...+.++.-+.++-.++|..+...... ...-++. .|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCHH----HHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhCCCCC
Confidence 3556777776543221 11 1 1446778777777777788766532221 2222344 6778888754
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.53 E-value=0.0027 Score=70.21 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=61.1
Q ss_pred CCC-CccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccch
Q 002154 556 GLR-GLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPE 633 (959)
Q Consensus 556 ~~~-~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~ 633 (959)
+++ .|+++.+-.. +..+-...|.++.+|+.+.+..+.+ ..+..++. .+.++..|+.+.+..+ ++.++.
T Consensus 61 ~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p----~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~ 130 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKP----SCVKKIGRQAFMFCSELTDIPILDS--VTEIDS 130 (394)
T ss_dssp TCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCC----CCCCEECTTTTTTCTTCCBCGGGTT--CSEECT
T ss_pred CCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCC----CeeeEechhhchhcccceeeccCCc--cceehh
Confidence 453 4777777542 2333345577888888888875110 22444432 3556777777766543 555554
Q ss_pred -hhccCCCCcEEecCCCcCCcccch-hhhccccCCeeecCC
Q 002154 634 -ALCELYNLERLNVSGCSHLRELPR-GIGKLRKLMYLYNAG 672 (959)
Q Consensus 634 -~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~ 672 (959)
.+..+.+|+.+.+... +..++. .+..+.+|+.+.+..
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 4567777888777542 444443 355667777777654
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.49 E-value=0.00031 Score=74.95 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhccCC--------cCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESS--------KEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|.+..++.+...+..... ........+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887754100 00113456889999999999999999873
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.48 E-value=0.00041 Score=78.25 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=60.4
Q ss_pred EEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEec----------c----c-hhHHHhhcccceEecCCCChhhhHHHH
Q 002154 275 FLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITT----------R----K-ETVALIMGSTQVISVNELSEMECWSVF 339 (959)
Q Consensus 275 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~-~~v~~~~~~~~~~~l~~L~~~~~~~lf 339 (959)
-++++|++...+.+....+...+...... .+|+.| . . .-..........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999877766777787777665444 344343 2 1 111112233456899999999999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhc-CCchhHHHHHH
Q 002154 340 ESLAFFGKSMQERENLEKIGWEIVRKC-KGLPLAAKTIA 377 (959)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c-~G~Plai~~~~ 377 (959)
...+..... .. ..+....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~~-~~---~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI-NI---SEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC-CB---CHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC-CC---CHHHHHHHHHHccCCCHHHHHHHH
Confidence 877532111 11 123445677777 78887554443
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.40 E-value=0.00031 Score=74.46 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=37.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|+...++++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3589999999999888865332 2345789999999999999999873
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.0023 Score=65.99 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=92.0
Q ss_pred cccccchhHHHHHHHHHh---ccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLL---CESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.+..++++.+.+. .... -.....+-+.|+|+.|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468999887777665432 2110 00112345889999999999999999873 22222 3333222110
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC--------------CchhHhhhcCC--CCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG--------------KWEPFYNCLKS--SPH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~ 302 (959)
.. .......+...+... ....+.++++|++...... ....+...+.. ...
T Consensus 84 -------~~------~~~~~~~~~~~~~~a-~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------MF------VGVGASRVRDMFEQA-KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------SC------CCCCHHHHHHHHHHH-HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------Hh------hhhhHHHHHHHHHHH-HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 001122233333333 4456789999998321100 01112222221 123
Q ss_pred CCEEEEeccchh-HHHhh-c---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCC-chhHHHH
Q 002154 303 GSKLLITTRKET-VALIM-G---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKG-LPLAAKT 375 (959)
Q Consensus 303 gs~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plai~~ 375 (959)
+..||.||.... +.... . -...+.+...+.++-.+++...+.... ....... ..+++.+.| .+--+..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~~----~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDA----AIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccccH----HHHHHHcCCCCHHHHHH
Confidence 455666665542 21111 1 134677777787777777776542211 1111122 256777777 6654443
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.38 E-value=0.00024 Score=73.89 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.5
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|.+..+.++.+.+..... ....|.|+|+.|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 588999999988887754321 2346789999999999999999985
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0022 Score=70.22 Aligned_cols=179 Identities=16% Similarity=0.088 Sum_probs=95.9
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+.+++. ....| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 3588989888888776432100 02345678899999999999999999984 33333 334433211
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC------cCC--------chhHhhhcCCC--C
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED------YGK--------WEPFYNCLKSS--P 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~------~~~--------~~~l~~~l~~~--~ 301 (959)
... -......+...+... -...+.+|++|++.... ... ...++..+... .
T Consensus 281 ------------sk~-vGesek~ir~lF~~A-r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 281 ------------QKY-VGEGARMVRELFEMA-RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ------------CCS-SSHHHHHHHHHHHHH-HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ------------ccc-CCHHHHHHHHHHHHH-HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 000 001111222222222 45678999999985311 000 01122222221 2
Q ss_pred CCCEEEEeccchhH-HHh-h--c-ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETV-ALI-M--G-STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v-~~~-~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+..||.||..... ... . + -...+.+..-+.++-.++|+.++.... ....-++. .|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl~----~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRWE----LISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCHH----HHHHHCCCCC
Confidence 34455667654321 111 1 1 245788888888888888877653221 12222344 6788888753
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=8.9e-05 Score=72.33 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=69.9
Q ss_pred hhhhHHhccCCcccEEEcccc-CccccccccccccccccccCCccEEeeccCCCccc-----cchhhccCCCCcEEecCC
Q 002154 575 EVLPQLFDKLTCLRALKLEVR-QPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIER-----LPEALCELYNLERLNVSG 648 (959)
Q Consensus 575 ~~~~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~ 648 (959)
..+...+...+.|+.|+|+++ .+- ......+...+...++|++|+|++|. +.. +...+...++|++|+|++
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~--~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCC--HHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCC--HHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 345666788999999999983 210 01123355667778899999999998 653 556677788999999999
Q ss_pred CcCCcc-----cchhhhccccCCeeec--CCc
Q 002154 649 CSHLRE-----LPRGIGKLRKLMYLYN--AGT 673 (959)
Q Consensus 649 ~~~l~~-----lp~~i~~L~~L~~L~l--~~~ 673 (959)
|. +.. +...+...++|++|++ ++|
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 87 543 4566777789999999 656
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.00088 Score=81.07 Aligned_cols=158 Identities=21% Similarity=0.202 Sum_probs=85.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc---ccc-ccceeEEE-EeCCCCCHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS---VKR-NFQKRIWV-CVSEPFDEFRI 239 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~-~F~~~~wv-~v~~~~~~~~~ 239 (959)
..++||+.+++++++.|... ...-+.|+|++|+|||++|+.+++... +.. .....+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 35899999999999998643 345578999999999999999987311 000 11223322 11110
Q ss_pred HHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc-----CCchhHhhhcCC--CCCCCEEEEeccc
Q 002154 240 ARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY-----GKWEPFYNCLKS--SPHGSKLLITTRK 312 (959)
Q Consensus 240 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~iivTtr~ 312 (959)
+. +. ......+.....+.......++.+|++||+..... ..-......+.. ...+..+|.+|..
T Consensus 254 -------~~-~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LA-GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp --------C-CC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred -------hc-cc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 00 11 11112232233333331344678999999964310 001111222221 1234566666654
Q ss_pred hhHHHh-------hcccceEecCCCChhhhHHHHHHhh
Q 002154 313 ETVALI-------MGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 313 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
...... ......+.+.+.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432211 1123468899999999888887543
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00088 Score=73.57 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=95.1
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+..+-. .+-..++-|.++|++|.|||.||+.+++. ....| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4688999988888876432110 02345678899999999999999999984 33333 334433211
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC-------CcCC-------chhHhhhcCCC--C
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE-------DYGK-------WEPFYNCLKSS--P 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~-------~~~~-------~~~l~~~l~~~--~ 301 (959)
... ....+...+.+....-...+.+|++|++..- .... ...+...+... .
T Consensus 253 ------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 000 0111122222222213446899999998420 0000 11233333322 2
Q ss_pred CCCEEEEeccchhHH-Hhh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCc
Q 002154 302 HGSKLLITTRKETVA-LIM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGL 369 (959)
Q Consensus 302 ~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 369 (959)
.+..||.||...... ..+ .-...+.++.-+.++-.++|+.++..... ...-++. .|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl~----~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINWQ----ELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCHH----HHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCHH----HHHHhCCCC
Confidence 344566677654322 111 12457888887888777888765532211 1222343 677888774
No 224
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.28 E-value=0.0019 Score=71.40 Aligned_cols=109 Identities=10% Similarity=0.145 Sum_probs=72.8
Q ss_pred ccCCCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCcccccccccccc-ccccccCCccEEeeccCCCcccc
Q 002154 553 NVKGLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIP-ENIEKLLHLKYLSLAHQEAIERL 631 (959)
Q Consensus 553 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~i~~l 631 (959)
.|.++.+|+++.+..+....+..+-...|..+..|+.+.+.. + +..++ ..+.++.+|+.+.+..+ +..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-------~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-------S-VTEIDSEAFHHCEELDTVTIPEG--VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-------T-CSEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-------c-cceehhhhhhhhcccccccccce--eeee
Confidence 355899999999876532223333345578888888877765 2 44454 34678899999999754 5556
Q ss_pred ch-hhccCCCCcEEecCCCcCCcccchhhhccccCCeeecCCc
Q 002154 632 PE-ALCELYNLERLNVSGCSHLRELPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 632 p~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 673 (959)
+. .+..+.+|+.+.+..+ +..+....-.-.+|+.+.+...
T Consensus 152 ~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred cccceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 54 5678889999998753 5666544333467887777543
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0028 Score=68.65 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=95.0
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|.|||.||+.+++. ....| +.++.++-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh----
Confidence 4678899888888776532100 02344678999999999999999999984 33333 23333221
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC--------cCC------chhHhhhcCC--CC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED--------YGK------WEPFYNCLKS--SP 301 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~ 301 (959)
. .. .....+.....+....-...+.+|++|++.... ... ...++..+.. ..
T Consensus 253 ----------~-sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 ----------I-QK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ----------C-CS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ----------h-hc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 1 00 011112222222222245678999999985310 000 1112222221 22
Q ss_pred CCCEEEEeccchhHH-Hhh-c--c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 302 HGSKLLITTRKETVA-LIM-G--S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 302 ~gs~iivTtr~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.+..||.||...... ..+ . . ...+.+..-+.++-.++|..++.... ....-++. .|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHH----HHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHH----HHHHhCCCCC
Confidence 344566677654322 111 1 1 34677777777777788876653211 12222344 6777887743
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00026 Score=72.65 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=62.3
Q ss_pred cccCCccEEeeccCCCcccc---chhhccCCCCcEEecCCCcCCcccchhhhccc--cCCeeecCCccccccCCc-----
Q 002154 612 EKLLHLKYLSLAHQEAIERL---PEALCELYNLERLNVSGCSHLRELPRGIGKLR--KLMYLYNAGTDSLRYLPA----- 681 (959)
Q Consensus 612 ~~l~~L~~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~~p~----- 681 (959)
.++++|+.|+|++|. +..+ |..+.++++|++|+|++|. +..+ ..+..+. +|++|++.+|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 468899999999998 7765 4667899999999999987 7766 3455555 999999999964444442
Q ss_pred --cCcCCCCCCccCceee
Q 002154 682 --GIDELIRLRSVRKFVV 697 (959)
Q Consensus 682 --~i~~L~~L~~L~~~~~ 697 (959)
.+..+++|+.|+...+
T Consensus 244 ~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHHHCTTCCEESSCBC
T ss_pred HHHHHHCcccCeECCcCC
Confidence 2566777777765443
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.00016 Score=67.43 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE 232 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 232 (959)
-..++|+|+.|+|||||++.+++..... .+ ..+++...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 4589999999999999999998842211 11 245666543
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.00055 Score=82.72 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=79.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcc---cccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDS---VKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++||+++++++.+.+... ...-+.++|++|+|||++|+.+.+... +.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 35999999999999999653 234478999999999999999987310 000001111121111
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccchhHHH----
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRKETVAL---- 317 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~---- 317 (959)
..... +. -...... .+... ...++.+|++|.- .+....+...+. ....++|.||.......
T Consensus 245 --g~~~~-G~--~e~~l~~---~~~~~-~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 --GTKYR-GE--FEDRLKK---VMDEI-RQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------CTTHHH---HHHHH-HTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --ccccc-ch--HHHHHHH---HHHHH-HhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000 00 0111222 22222 4467889999921 122222333332 22456676665544211
Q ss_pred ---hhcccceEecCCCChhhhHHHHHHhh
Q 002154 318 ---IMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 318 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
.......+.+.+.+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11224579999999999999998654
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.15 E-value=0.00044 Score=72.01 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=90.1
Q ss_pred cccccchhHHHHHHHHHhccCCc------CCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.++.++++.+.+..-... .....+-+.|+|++|+|||+||+.+++. ....| +.+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH---
Confidence 46899998888777765310000 0112234789999999999999999884 22222 1111111100
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc---------------CCchhHhhhcCCC---
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY---------------GKWEPFYNCLKSS--- 300 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~--- 300 (959)
... +.. ......+. ... ...++.+|++||+..-.. .....+...+...
T Consensus 83 -------~~~-~~~--~~~~~~~~---~~a-~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 -------MFV-GLG--ASRVRDLF---ETA-KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp -------SCS-SSC--SSSSSTTH---HHH-HHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred -------hhc-chH--HHHHHHHH---HHH-HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 000 100 01111111 222 234568999999954211 1122333333221
Q ss_pred CCCCEEEEeccchhHH-Hh-hc---ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCchh
Q 002154 301 PHGSKLLITTRKETVA-LI-MG---STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLPL 371 (959)
Q Consensus 301 ~~gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 371 (959)
.....||.||...... .. .. -...+.+.+.+.++-.+++...+..... .....+. .|++.+.|.|-
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~----~la~~~~g~~g 219 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDVNLQ----EVAKLTAGLAG 219 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-CSSCCTT----TTTSSSCSSCH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-CCccCHH----HHHHHcCCCCH
Confidence 1224566677654311 11 11 1346788889999988888776532111 1111122 46666777553
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.00085 Score=81.05 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=87.6
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.+..++.+.+.+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4689999999998888864321 01223457999999999999999999873 2111223345554432110
Q ss_pred HHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCC-----------CCCCEEEEec
Q 002154 242 AIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSS-----------PHGSKLLITT 310 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTt 310 (959)
... ....+...++. ...-+|+||++.....+....+...+..+ ....+||+||
T Consensus 564 ----------~~~--~~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 564 ----------HST--SGGQLTEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----------CCC--C---CHHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ----------ccc--ccchhhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 000 01111122221 23448999999766555555555555432 1356888888
Q ss_pred cc-----hhH----HHhh-----cc-cceEecCCCChhhhHHHHHHh
Q 002154 311 RK-----ETV----ALIM-----GS-TQVISVNELSEMECWSVFESL 342 (959)
Q Consensus 311 r~-----~~v----~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 342 (959)
.. ..+ ...+ .. ...+.+.++++++-..++...
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 73 111 1111 11 247888889888877776654
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.09 E-value=0.0016 Score=74.96 Aligned_cols=165 Identities=16% Similarity=0.224 Sum_probs=78.9
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.+++|-++..+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 458898887777766543211101124568999999999999999999873 22222 2233333222222211111
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC----CchhHhhhcCCCC---------------CCCE
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG----KWEPFYNCLKSSP---------------HGSK 305 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ 305 (959)
..++ . ....+...+... ..... +++||++...... ....+...+.... ....
T Consensus 156 ~~ig--~-----~~~~~~~~~~~a-~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 156 TYVG--A-----MPGRIIQGMKKA-GKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHhc--c-----CchHHHHHHHHh-hccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 1111 0 001112222222 22233 8889998653322 1233333332211 2345
Q ss_pred EEEeccchh-HH-HhhcccceEecCCCChhhhHHHHHHhh
Q 002154 306 LLITTRKET-VA-LIMGSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 306 iivTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
||.||.... +. ........+.+.+++.++-.+++..+.
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 666665432 11 111223478889999888877776654
No 232
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.01 E-value=0.01 Score=66.35 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=94.6
Q ss_pred cccccchhHHHHHHHHHhccCC------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.++.++++.+.+..-.. -+....+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4689999877777665432110 01112344889999999999999999983 22222 33443322110
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC--------------CchhHhhhcCC--CCC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG--------------KWEPFYNCLKS--SPH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~ 302 (959)
+ .. .........+... ..+.+.+|+||++..-... ....+...+.. ...
T Consensus 89 --------~-----~g-~~~~~~r~lf~~A-~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------F-----VG-VGAARVRDLFAQA-KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------C-----TT-HHHHHHHHHHHHH-HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------H-----hc-ccHHHHHHHHHHH-HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00 0111222333333 5567899999999542110 11222222221 123
Q ss_pred CCEEEEeccchhHHH-h-hc--c-cceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 303 GSKLLITTRKETVAL-I-MG--S-TQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 303 gs~iivTtr~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
+..||.||....... . .. . ...+.+.+.+.++-.+++..++.... .....++. .|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~l~----~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVNLE----IIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCHH----HHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-CcchhhHH----HHHHhcCCCc
Confidence 556666776543321 1 11 1 23778888887777778776653221 11112233 5788888876
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.86 E-value=0.0072 Score=71.63 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=96.6
Q ss_pred cccccchhHHHHHHHHHhc----cCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLC----ESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.++.|-++.+++|.+.+.- +.- -+...++-|.++|++|+|||+||+.+++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 4578888888888776532 110 02245678999999999999999999995 33333 3343221
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC------cCCc-hhHh----hhcCCC--CCCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED------YGKW-EPFY----NCLKSS--PHGS 304 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~------~~~~-~~l~----~~l~~~--~~gs 304 (959)
+. . . ........+...+... .+..+.+|++|++..-- .... ..+. ..+... ..+.
T Consensus 274 -----l~---s--k-~~gese~~lr~lF~~A-~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----IM---S--K-LAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HH---S--S-CTTHHHHHHHHHHHHH-TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----hh---c--c-cchHHHHHHHHHHHHH-HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 1 0 0111122233333333 56778999999985411 1111 1122 222111 1233
Q ss_pred EEEEeccchh-HHHhhc----ccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 305 KLLITTRKET-VALIMG----STQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 305 ~iivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
.||.||.... +...+. -...+++..-+.++-.++|..+..... ....-++. .|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDLE----QVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCHH----HHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHhcCCCC
Confidence 4555665432 222211 145788888888888888876653211 12223344 6888888864
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.79 E-value=0.0047 Score=66.37 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=83.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+. ....| ..+.........++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 36899999999888887642 35889999999999999999873 32222 2344433333332211100
Q ss_pred HHhCCCCCcccccHHHHHHHHHHHHhcC--cEEEEEeccCCCCCcCCchhHhhhcCCC-----------CCCCEEEEecc
Q 002154 245 EALKPGSAKELVEFQSLMQHIQEYVVEG--EKFLLVLDDVWNEDYGKWEPFYNCLKSS-----------PHGSKLLITTR 311 (959)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr 311 (959)
. ....... .. ..+ ...++++|++..........+...+..+ .....|+.|+.
T Consensus 94 ---~-~~~~~~~----------~~-~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 94 ---Y-NQHKGNF----------EV-KKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp ---E-ETTTTEE----------EE-EECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ---e-cCCCCce----------Ee-ccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 0 0000000 00 001 1248999999765444344444433321 23445555554
Q ss_pred chh------H-HHhhcccc-eEecCCCChhhhHHHHHHhhc
Q 002154 312 KET------V-ALIMGSTQ-VISVNELSEMECWSVFESLAF 344 (959)
Q Consensus 312 ~~~------v-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 344 (959)
... + ........ .+.+.+.+.++-.+++.+.+.
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 221 1 11112223 588999999999999888764
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.68 E-value=0.001 Score=70.39 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 002154 172 KEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV 230 (959)
Q Consensus 172 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 230 (959)
..++.+.+++..... .....+.|+|+.|+|||+||+.+++.... ..-..++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 344455566643221 12467889999999999999999984220 22223455654
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.67 E-value=0.0061 Score=64.02 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578889999999999999999984
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0048 Score=61.74 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC-----------CCCcccccHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP-----------GSAKELVEFQ 259 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~-----------~~~~~~~~~~ 259 (959)
.-.++.|+|++|+||||||..+.. . .-..++|++....++...+.. +...++. ..........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446899999999999999999987 1 123577888777666655443 3333221 0111111223
Q ss_pred HHHHHHHHHHhcCcEEEEEeccCC
Q 002154 260 SLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 260 ~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
.....++.. ...+.-+||+|.+.
T Consensus 93 ~~~~~~~~l-~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKT-VDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHH-CCTTEEEEEEECCC
T ss_pred HHHHHHHHH-hhcCCCEEEEcCcH
Confidence 344444444 43357799999874
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.60 E-value=0.0025 Score=77.07 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=72.3
Q ss_pred cccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIAR 241 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 241 (959)
..++|.++.++.+...+..... ........+.++|++|+|||++|+.+.+. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588999999888887753221 01234467999999999999999999873 22 2234455443211100
Q ss_pred HHHHHhCCCCCcccccH---HHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEE
Q 002154 242 AIIEALKPGSAKELVEF---QSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLL 307 (959)
Q Consensus 242 ~i~~~l~~~~~~~~~~~---~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 307 (959)
...+. +........ ..+...++ +...-+|+||++.....+....+...+..+. ....||
T Consensus 530 --~~~l~-g~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI 602 (758)
T 1r6b_X 530 --VSRLI-GAPPGYVGFDQGGLLTDAVI----KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_dssp --CSSSC-CCCSCSHHHHHTTHHHHHHH----HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred --Hhhhc-CCCCCCcCccccchHHHHHH----hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEE
Confidence 00000 111111000 11222222 2346799999997665555555555554321 234577
Q ss_pred Eeccc
Q 002154 308 ITTRK 312 (959)
Q Consensus 308 vTtr~ 312 (959)
.||..
T Consensus 603 ~tsN~ 607 (758)
T 1r6b_X 603 MTTNA 607 (758)
T ss_dssp EEECS
T ss_pred EecCc
Confidence 77753
No 239
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.58 E-value=0.032 Score=61.08 Aligned_cols=78 Identities=9% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCCccEEEecCCcchhhhhhhhHHhccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccchh
Q 002154 556 GLRGLRSLLVESDEYSWFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPEA 634 (959)
Q Consensus 556 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~~ 634 (959)
...+|+++.+... +..+-...|.++.+|+.++|.. + +..++. .+.++ .|..+.+..+ ++.++..
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~-------~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~ 108 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAS-------T-VTSIGDGAFADT-KLQSYTGMER--VKKFGDY 108 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECT-------T-CCEECTTTTTTC-CCCEEEECTT--CCEECTT
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCC-------c-ceEechhhhcCC-CCceEECCce--eeEeccc
Confidence 3455666665432 2333334466777777777754 2 444433 23343 4555554432 5555554
Q ss_pred hccCCCCcEEecCC
Q 002154 635 LCELYNLERLNVSG 648 (959)
Q Consensus 635 i~~L~~L~~L~l~~ 648 (959)
.....+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 33334666666654
No 240
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.53 E-value=0.018 Score=62.13 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=100.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l 270 (959)
-.++..++|+.|.||++.|+.+.+... ...|+....+.+....+ .+++.+.+...-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCC
Confidence 457899999999999999988876311 12332211122222222 3333333333335
Q ss_pred cCcEEEEEeccCCC-CCcCCchhHhhhcCCCCCCCEEEEeccc-------hhHHHhh-cccceEecCCCChhhhHHHHHH
Q 002154 271 EGEKFLLVLDDVWN-EDYGKWEPFYNCLKSSPHGSKLLITTRK-------ETVALIM-GSTQVISVNELSEMECWSVFES 341 (959)
Q Consensus 271 ~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 341 (959)
-+++-++|+|++.. .+...++.+...+.....++.+|+++.. ..+...+ .....++..+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 56777888999876 5556778888888766667777776643 2333332 3356899999999999888877
Q ss_pred hhccCCCCCCCchHHHHHHHHHHhcCCchhHHHHH
Q 002154 342 LAFFGKSMQERENLEKIGWEIVRKCKGLPLAAKTI 376 (959)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 376 (959)
.+...+-. -..+.+..+++.++|.+.++...
T Consensus 154 ~~~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 76432211 12345568999999988877543
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.53 E-value=0.011 Score=66.63 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=35.8
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|+++.++.+...+... .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5899999998888877542 36889999999999999999984
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.43 E-value=0.0063 Score=74.32 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=72.7
Q ss_pred ccccchhHHHHHHHHHhccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 002154 166 EIFGRQKEKNELVNRLLCESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARA 242 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 242 (959)
.++|.+..++.+...+..... ........+.|+|+.|+|||++|+.+.+. ....-...+.++++.-.... ....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HHHH
Confidence 579999999998888754321 01223468999999999999999999873 21111123445544322110 0000
Q ss_pred HHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCcCCchhHhhhcCCCC-----------CCCEEEEecc
Q 002154 243 IIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYGKWEPFYNCLKSSP-----------HGSKLLITTR 311 (959)
Q Consensus 243 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 311 (959)
++..- ....+......+...++. ...-+|+||++.....+....+...+..+. .+..||+||.
T Consensus 636 l~g~~--~~~~G~~~~g~l~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 636 LIGAP--PGYVGYEEGGQLTEAVRR----RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp C----------------CHHHHHHH----CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HcCCC--CCCcCccccchHHHHHHh----CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 00000 000000001122222222 234699999997766555566666665431 2444777776
Q ss_pred c
Q 002154 312 K 312 (959)
Q Consensus 312 ~ 312 (959)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0016 Score=67.71 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=44.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe--CCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCV--SEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEY 268 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 268 (959)
..+++.|+|++|+||||||.++... .-..++|+++ .+..+. . . .+.+.....+.+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------~-~--~~le~~l~~i~~~ 179 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------Y-N--TDFNVFVDDIARA 179 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------C-B--CCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------h-h--cCHHHHHHHHHHH
Confidence 3467889999999999999999873 1123457776 332110 0 0 3344555555555
Q ss_pred HhcCcEEEEEeccCCC
Q 002154 269 VVEGEKFLLVLDDVWN 284 (959)
Q Consensus 269 ~l~~k~~LlVlDdv~~ 284 (959)
+...+ +||+|++..
T Consensus 180 -l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 -MLQHR-VIVIDSLKN 193 (331)
T ss_dssp -HHHCS-EEEEECCTT
T ss_pred -HhhCC-EEEEecccc
Confidence 44444 999999943
No 244
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.34 E-value=0.052 Score=59.38 Aligned_cols=80 Identities=10% Similarity=0.175 Sum_probs=55.0
Q ss_pred hccCCcccEEEccccCccccccccccccc-cccccCCccEEeeccCCCccccchh-hccCCCCcEEecCCCcCCcccchh
Q 002154 581 FDKLTCLRALKLEVRQPWWCQNFIKDIPE-NIEKLLHLKYLSLAHQEAIERLPEA-LCELYNLERLNVSGCSHLRELPRG 658 (959)
Q Consensus 581 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~ 658 (959)
+....+|+.+.+.. .++.+++ .+.++.+|+.+.|..+ ++.++.. +.+. +|+.+.+-. .+..++..
T Consensus 42 ~~~~~~i~~v~ip~--------~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~ 108 (379)
T 4h09_A 42 YKDRDRISEVRVNS--------GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDY 108 (379)
T ss_dssp GGGGGGCSEEEECT--------TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTT
T ss_pred cccccCCEEEEeCC--------CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccc
Confidence 45567888888875 3666754 4788999999999754 7777763 4444 677777753 36666655
Q ss_pred hhccccCCeeecCCc
Q 002154 659 IGKLRKLMYLYNAGT 673 (959)
Q Consensus 659 i~~L~~L~~L~l~~~ 673 (959)
.-...+|+.+.+..+
T Consensus 109 aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTCCCSEEECCTT
T ss_pred eeccCCcccccCCCc
Confidence 434457888887653
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.17 E-value=0.035 Score=57.43 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=78.1
Q ss_pred cccccchhHHHHHHHHHhccCC--------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS--------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDE 236 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 236 (959)
.++.|-++.+++|.+.+..+-. .-....+ +.++|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 4578888888777765421100 0011223 999999999999999999883 221 2344443321110
Q ss_pred HHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCC-------cCC----chhHhhhcCCCC--CC
Q 002154 237 FRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNED-------YGK----WEPFYNCLKSSP--HG 303 (959)
Q Consensus 237 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~-------~~~----~~~l~~~l~~~~--~g 303 (959)
.....+.....+-+......+.++++|++.... ... ...+...+..+. ..
T Consensus 84 -----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 -----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred -----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 000011111222222123457899999985311 001 112222333222 23
Q ss_pred CEEEEeccchhHHH-hh----cccceEecCCCChhhhHHHHHHhh
Q 002154 304 SKLLITTRKETVAL-IM----GSTQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 304 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
.-++.+|....+.. .. .-...+.+...+.++-.++|....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 33445565543321 11 124567788888888888887654
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.00 E-value=0.056 Score=56.17 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=34.0
Q ss_pred ccccccchhHHHHHHHHHhccCCc------CCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 164 ESEIFGRQKEKNELVNRLLCESSK------EQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|.++.++++.+....-... .-.-.+-+.|+|+.|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 357899887776665543211000 0011122899999999999999999984
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.98 E-value=0.021 Score=62.41 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHh----ccC--------------------CcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLL----CES--------------------SKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|.++.++.|...+. ... .........+.++|++|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 57898888888877662 100 001123456889999999999999999873
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.93 E-value=0.021 Score=57.93 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--------cccccH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKR----NFQKRIWVCVSEPFDEFRIARAIIEALKPGSA--------KELVEF 258 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 258 (959)
.-.++.|+|++|+|||||+..+........ .-..++|++....++...+ ..+++.++.... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 446999999999999999998876311111 1246789988776555443 334444432110 011122
Q ss_pred HH---HHHHHHHHHhcCcEEEEEeccCC
Q 002154 259 QS---LMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 259 ~~---~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
.. ....+...+...+.-+||+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 22334444223567899999984
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.91 E-value=0.12 Score=58.00 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=89.0
Q ss_pred cccccchhHHHHHHHHHh---ccCC---cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 002154 165 SEIFGRQKEKNELVNRLL---CESS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFR 238 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 238 (959)
.+++|.++.++++.+... .... -...-.+-|.|+|++|+||||||+.++.. ... ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH---
Confidence 468999877766665442 2110 00111234899999999999999999984 222 223444332100
Q ss_pred HHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc----------CCc----hhHhhhcCCC--CC
Q 002154 239 IARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY----------GKW----EPFYNCLKSS--PH 302 (959)
Q Consensus 239 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~----------~~~----~~l~~~l~~~--~~ 302 (959)
.... ........+.+......+.++++|++..... +.+ ..+...+..+ ..
T Consensus 103 ------------~~~g--~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 103 ------------MFVG--VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp ------------SCTT--HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred ------------hhhh--hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 0000 0011111111110112357999999843211 111 2233333322 22
Q ss_pred CCEEEEeccchhHHH-hh----cccceEecCCCChhhhHHHHHHhhccCCCCCCCchHHHHHHHHHHhcCCch
Q 002154 303 GSKLLITTRKETVAL-IM----GSTQVISVNELSEMECWSVFESLAFFGKSMQERENLEKIGWEIVRKCKGLP 370 (959)
Q Consensus 303 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 370 (959)
+..++.||....... .. .-...+.+...+.++-.+++..++.... .....++. .|++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~l~----~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDLA----LLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSSTTH----HHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHHHH----HHHHhcCCCC
Confidence 344555666554321 11 1234788888888888888876653211 11111222 5778888865
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.79 E-value=0.035 Score=66.95 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=83.9
Q ss_pred cccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 002154 165 SEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEF 237 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 237 (959)
.+++|.+..+++|.+++...-. -.-.....|.|+|++|+||||||+.+.+. ....| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 4689999999998888753100 01234467899999999999999999884 33222 333321
Q ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcCcEEEEEeccCCCCCc------C-----CchhHhhhcCCC--CCCC
Q 002154 238 RIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNEDY------G-----KWEPFYNCLKSS--PHGS 304 (959)
Q Consensus 238 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs 304 (959)
.+. .... ......+...+... ....+.++++|++..... . ....+...+... ..+.
T Consensus 273 --------~l~-~~~~-g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 273 --------EIM-SKLA-GESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --------HHS-SSST-THHHHHHHHHHHHH-HHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred --------Hhh-hhhh-hhHHHHHHHHHHHH-HhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 111 0000 01111222223332 344678999999843210 0 011222222221 2244
Q ss_pred EEEEeccchh-HHHhhc---c-cceEecCCCChhhhHHHHHHhh
Q 002154 305 KLLITTRKET-VALIMG---S-TQVISVNELSEMECWSVFESLA 343 (959)
Q Consensus 305 ~iivTtr~~~-v~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~ 343 (959)
.+|.||.... +...+. . ...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5566665432 211111 1 2456788888888888887664
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.72 E-value=0.013 Score=62.79 Aligned_cols=86 Identities=22% Similarity=0.228 Sum_probs=54.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 266 (959)
.-.++.|+|++|+||||||..++... ...=..++|++....++.. .++.++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999988742 2222346789887777654 4445542211 12234555555555
Q ss_pred HHHhcCcEEEEEeccCC
Q 002154 267 EYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~ 283 (959)
...-..+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 44223455689999984
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.70 E-value=0.017 Score=58.26 Aligned_cols=117 Identities=20% Similarity=0.127 Sum_probs=61.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc------------------
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAK------------------ 253 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------------------ 253 (959)
-.+++|+|++|+|||||++.++.... ..=..++|+.... ....+...+ ..++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999999885321 1112455666543 344443333 233311100
Q ss_pred ----ccccHHHHHHHHHHHHhcCc--EEEEEeccCCCC---CcCCchhHhhhcCCC--CCCCEEEEeccch
Q 002154 254 ----ELVEFQSLMQHIQEYVVEGE--KFLLVLDDVWNE---DYGKWEPFYNCLKSS--PHGSKLLITTRKE 313 (959)
Q Consensus 254 ----~~~~~~~~~~~l~~~~l~~k--~~LlVlDdv~~~---~~~~~~~l~~~l~~~--~~gs~iivTtr~~ 313 (959)
...+.+++...+.......+ ..+||+|..... +......+...+... ..|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455544444422223 349999998531 222233444443321 3477788888764
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.61 E-value=0.0089 Score=57.50 Aligned_cols=120 Identities=21% Similarity=0.147 Sum_probs=62.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC---CCCHHHHHHHHHHH---hCCCC---Ccc----cccH
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE---PFDEFRIARAIIEA---LKPGS---AKE----LVEF 258 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~i~~~---l~~~~---~~~----~~~~ 258 (959)
...|.|++..|.||||.|--..- +..++=-.+.++.... ......++..+.-. .+.+- ... ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35667777777999999965544 1222212233443322 23334444443100 00000 000 0112
Q ss_pred HHHHHHHHHHHhcCcEEEEEeccCCC---CCcCCchhHhhhcCCCCCCCEEEEeccch
Q 002154 259 QSLMQHIQEYVVEGEKFLLVLDDVWN---EDYGKWEPFYNCLKSSPHGSKLLITTRKE 313 (959)
Q Consensus 259 ~~~~~~l~~~~l~~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 313 (959)
.......++.+..++-=|||||++-. -..-..+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 23344455552234445999999832 23345667777777777778899999984
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.59 E-value=0.027 Score=60.44 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKR----NFQKRIWVCVSEPFDEFRIARAIIEALK 248 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 248 (959)
.-.++.|+|++|+||||||..++....... .-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 567999999999999999988876321111 224678999988877766543 445544
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.56 E-value=0.036 Score=59.03 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--------cccccH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRN----FQKRIWVCVSEPFDEFRIARAIIEALKPGSA--------KELVEF 258 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 258 (959)
.-.++.|+|++|+||||||..++........ -..++|++....++...+. ++++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4568999999999999999888753211110 2367899998887776655 34555542110 011122
Q ss_pred H---HHHHHHHHHHhc-CcEEEEEeccC
Q 002154 259 Q---SLMQHIQEYVVE-GEKFLLVLDDV 282 (959)
Q Consensus 259 ~---~~~~~l~~~~l~-~k~~LlVlDdv 282 (959)
+ .+...+....-+ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 233444444222 46678888988
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.53 E-value=0.03 Score=59.66 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccc---------cc-----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKR---------NF-----QKRIWVCVSEPFDEFRIARAIIEALKPGSA---- 252 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---- 252 (959)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++..++.+ +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999988875311110 11 4678999988887776654 3455542110
Q ss_pred ----cccccHH---HHHHHHHHHHhc-CcEEEEEeccC
Q 002154 253 ----KELVEFQ---SLMQHIQEYVVE-GEKFLLVLDDV 282 (959)
Q Consensus 253 ----~~~~~~~---~~~~~l~~~~l~-~k~~LlVlDdv 282 (959)
....+.+ .+...+....-+ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 1112222 233444444222 45668899987
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.40 E-value=0.072 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.35 E-value=0.039 Score=57.16 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=53.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc--cceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHH-HHHH
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRN--FQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSL-MQHI 265 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~-~~~l 265 (959)
+++.|.|++|+||||||.+++.. .... =..++||+....++.. .+++++.... ....+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 37899999999999999887663 2222 2357899988888764 2566653221 112344444 3222
Q ss_pred HHH--HhcCcEEEEEeccCCC
Q 002154 266 QEY--VVEGEKFLLVLDDVWN 284 (959)
Q Consensus 266 ~~~--~l~~k~~LlVlDdv~~ 284 (959)
... .-+++.-++|+|-+..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 221 1346788999999843
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.018 Score=56.68 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
|++.+++|.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667788888876532 23568999999999999999999876
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.22 E-value=0.0087 Score=59.46 Aligned_cols=113 Identities=16% Similarity=-0.012 Sum_probs=60.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC-CcccccHHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS-AKELVEFQSLMQHIQEYV 269 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~ 269 (959)
.-.++.|+|..|+||||++..+... ...+-..++.+..... .. ....++..++... ........++...+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~- 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN- 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST-
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH-
Confidence 3578999999999999999777663 3222223334432221 11 1122333333111 11122334555555554
Q ss_pred hcC-cEEEEEeccCCCCCcCCchhHhhhcCCCCCCCEEEEeccc
Q 002154 270 VEG-EKFLLVLDDVWNEDYGKWEPFYNCLKSSPHGSKLLITTRK 312 (959)
Q Consensus 270 l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 312 (959)
..+ +.-+||+|.+..-+.+..+.+. .+.. .|..||+|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 333 3459999999654333333332 2322 27789998884
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.11 E-value=0.041 Score=58.99 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 266 (959)
.-.++.|+|++|+||||||.++... ....=..++|++....++.. .++.++.... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4578999999999999999888763 22222357899988777653 2444442111 11224455555554
Q ss_pred HHHhcCcEEEEEeccCCC
Q 002154 267 EYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~~ 284 (959)
......+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 442234566999999843
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.08 E-value=0.044 Score=59.03 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 266 (959)
.-.++.|.|.+|+||||||..+.... ...-..++|++....++.. .+..++.... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45689999999999999998887642 2222367899988877654 2344442111 11234556655665
Q ss_pred HHHhc-CcEEEEEeccCC
Q 002154 267 EYVVE-GEKFLLVLDDVW 283 (959)
Q Consensus 267 ~~~l~-~k~~LlVlDdv~ 283 (959)
.. .+ ++.-+||+|.+.
T Consensus 146 ~l-~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LL-VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HH-HTTTCCSEEEEECTT
T ss_pred HH-HhcCCCCEEEEeChH
Confidence 54 33 445699999884
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.07 E-value=0.034 Score=58.43 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEeC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ-KRIWVCVS 231 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~ 231 (959)
.-.+++|+|++|+|||||++.++..... .-. .++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 3468999999999999999988764221 112 35566543
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.93 E-value=0.1 Score=54.28 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988763
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.91 E-value=0.15 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.76 E-value=0.059 Score=57.83 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 266 (959)
.-+++.|.|.+|+||||||.+++... ...=..++|++....++... +..++.... ....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45689999999999999998887642 22223578999888776542 344442110 01123444544444
Q ss_pred HHHhcCcEEEEEeccCC
Q 002154 267 EYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~ 283 (959)
...-..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 43123455689999884
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.76 E-value=0.091 Score=52.64 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccc---cc-ccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSV---KR-NFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.+++|+|+.|+|||||++.++..... .. .-...+|+.....+.... +..+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 4579999999999999999999752111 11 123577887665444433 33344443
No 268
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.70 E-value=0.12 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.66 E-value=0.024 Score=56.05 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.++|.+.+... .+...+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555422 23567999999999999999999877
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.49 E-value=0.06 Score=58.72 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccc----ccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--------cccccH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSV----KRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA--------KELVEF 258 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 258 (959)
.-.++.|+|++|+|||||+..++-.... .+.-..++|++....++...+ +.+++.++.... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 4569999999999999999976421111 112345789988776665543 335555542110 011111
Q ss_pred H---HHHHHHHHHHhcCcEEEEEeccCC
Q 002154 259 Q---SLMQHIQEYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 259 ~---~~~~~l~~~~l~~k~~LlVlDdv~ 283 (959)
. .....+...+...+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1 222333333233567789999873
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.28 E-value=0.026 Score=54.80 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999874
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.27 E-value=0.039 Score=58.04 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.4
Q ss_pred cccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 167 IFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 167 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++|....+..+...+.... ......+|+|.|+.|+||||||+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555666665555442 245678999999999999999998865
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.23 E-value=0.042 Score=57.25 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444443322 234568999999999999999999976
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.20 E-value=0.067 Score=57.42 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCccccccc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCC-----------Cccc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNF----QKRIWVCVSEPFDEFRIARAIIEALKPGS-----------AKEL 255 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----------~~~~ 255 (959)
.-.++.|+|+.|+|||||+..++......... ..++|++....+....+ ..+++...... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999987632111111 23489988766544433 33444432110 0001
Q ss_pred ccHHHHHHHHHHHHhc------CcEEEEEeccCC
Q 002154 256 VEFQSLMQHIQEYVVE------GEKFLLVLDDVW 283 (959)
Q Consensus 256 ~~~~~~~~~l~~~~l~------~k~~LlVlDdv~ 283 (959)
....++...+... +. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~-~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDK-IKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHH-HHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHH-HHHhccccCCCCEEEEeCch
Confidence 1122333444444 33 467799999884
No 275
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.19 E-value=0.53 Score=63.34 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=74.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAKELVEFQSLMQHIQEYVVEG 272 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 272 (959)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+.........-. .-.-.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~--------~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL--------LPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE--------EEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc--------cCCCCC
Confidence 567899999999999997776531 122 23567777777776666655554431100000000 000146
Q ss_pred cEEEEEeccCCCCCcCC------chhHhhhcCCCC-----C-------CCEEEEeccchh------H-HHhhcccceEec
Q 002154 273 EKFLLVLDDVWNEDYGK------WEPFYNCLKSSP-----H-------GSKLLITTRKET------V-ALIMGSTQVISV 327 (959)
Q Consensus 273 k~~LlVlDdv~~~~~~~------~~~l~~~l~~~~-----~-------gs~iivTtr~~~------v-~~~~~~~~~~~l 327 (959)
++.++.+||+.-...+. .+.++..+..++ . +..+|.++.... + .+.......+.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Confidence 88999999974333332 233444443221 1 123344442221 1 111223456777
Q ss_pred CCCChhhhHHHHHHhh
Q 002154 328 NELSEMECWSVFESLA 343 (959)
Q Consensus 328 ~~L~~~~~~~lf~~~~ 343 (959)
...+.++-..+|....
T Consensus 1416 ~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7777777777776554
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.04 E-value=0.023 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.00 E-value=0.036 Score=58.90 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEeCCCC
Q 002154 175 NELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK-RNFQKRIWVCVSEPF 234 (959)
Q Consensus 175 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~ 234 (959)
-++++.+..-. .-..++|+|+.|+|||||++.+.+....+ ..+. ++++-+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 45667665432 45689999999999999999887632111 1233 3456666543
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.00 E-value=0.025 Score=53.96 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 002154 193 RIISLVGMGGIGKTTLAQFA 212 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v 212 (959)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.95 E-value=0.17 Score=53.47 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.++.|.|.+|+||||||..++.+....+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 457899999999999999988875422222 567788766 45667777776654
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.90 E-value=0.028 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.85 E-value=0.028 Score=55.13 Aligned_cols=23 Identities=39% Similarity=0.311 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.84 E-value=0.037 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|+|+|+.|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999873
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.82 E-value=0.027 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 284
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.79 E-value=0.014 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999965554
No 285
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.78 E-value=0.044 Score=59.54 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHHHHhcc----C-----CcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCE----S-----SKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~----~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789998888888877210 0 001123467899999999999999999983
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.77 E-value=0.11 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|++|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.76 E-value=0.048 Score=55.76 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 173 EKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 173 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445444544332 344568999999999999999999986
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.76 E-value=0.032 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.66 E-value=0.061 Score=63.77 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=37.4
Q ss_pred ccccccchhHHHHHHHHHhccCC-------cCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 164 ESEIFGRQKEKNELVNRLLCESS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 164 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.++.|.++.+++|.+.+.-+.. .+....+-|.++|++|.|||.||+.+++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34677888888888776543211 01233456889999999999999999985
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.62 E-value=0.69 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 291
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.54 E-value=0.095 Score=57.69 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=32.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHH
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD-EFRIARAI 243 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i 243 (959)
+.++|+|..|+|||||++.+..+... .+-+..+++.+.+..+ ..+++.++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHh
Confidence 46889999999999999988874221 1224456777766543 33444444
No 292
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.52 E-value=0.079 Score=54.14 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHHhccCCc------CCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSK------EQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+++|.++.+.++.+....-... .-.-.+-+.|+|+.|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46889887666655543211000 0011123899999999999999999974
No 293
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.45 E-value=0.032 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.054 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.40 E-value=0.038 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 357899999999999999997554
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.35 E-value=0.036 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.30 E-value=0.045 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999874
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.29 E-value=0.043 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.27 E-value=0.043 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.25 E-value=0.047 Score=53.07 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.24 E-value=0.046 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.20 E-value=0.05 Score=53.82 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.19 E-value=0.12 Score=46.44 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=26.4
Q ss_pred cccc--cccccccccCCccEEeeccCCCccccchh-hccCCCCcEEecCCCc
Q 002154 602 NFIK--DIPENIEKLLHLKYLSLAHQEAIERLPEA-LCELYNLERLNVSGCS 650 (959)
Q Consensus 602 ~~~~--~lp~~i~~l~~L~~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 650 (959)
..++ .+|..+. .+|++|+|++|. ++.+|.. +..+++|++|+|++|.
T Consensus 18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 18 RGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 3444 5554322 346666666666 6666653 4556666666666654
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.19 E-value=0.036 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 305
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.17 E-value=0.7 Score=50.63 Aligned_cols=25 Identities=48% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.++|++|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.14 E-value=0.049 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.13 E-value=0.062 Score=52.93 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.12 E-value=0.038 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 309
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.08 E-value=0.089 Score=55.67 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=31.2
Q ss_pred ccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 168 FGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 168 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++-+.-.+++++.+...- ..+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344455566666654221 123456789999999999999999887
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.97 E-value=0.048 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.93 E-value=0.037 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.91 E-value=0.042 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|+.|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999873
No 313
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.89 E-value=0.057 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++.+||+|.|-|||||||.|..+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4679999999999999999977765
No 314
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.89 E-value=0.3 Score=53.60 Aligned_cols=65 Identities=26% Similarity=0.239 Sum_probs=44.7
Q ss_pred HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHH
Q 002154 176 ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD-EFRIARAIIEA 246 (959)
Q Consensus 176 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~ 246 (959)
+.++.|..-. +-+.++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... ..++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5677775432 45678999999999999998887741 223445677888877643 45566666554
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.84 E-value=0.042 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.82 E-value=0.048 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.78 E-value=0.059 Score=52.80 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.78 E-value=0.059 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.73 E-value=0.048 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346788999999999999999986
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.72 E-value=0.053 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 321
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.68 E-value=0.054 Score=58.45 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|.+..++.+........ ..-|.|+|+.|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443221 123889999999999999999873
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.67 E-value=0.063 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....|.|+|+.|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.65 E-value=0.067 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.64 E-value=0.053 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.61 E-value=0.072 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999999876
No 326
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.60 E-value=0.076 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999976
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.58 E-value=0.054 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.57 E-value=0.066 Score=52.70 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.51 E-value=0.075 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.49 E-value=0.068 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 331
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.49 E-value=0.063 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.48 E-value=0.067 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.48 E-value=0.057 Score=53.00 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.48 E-value=0.077 Score=52.38 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.46 E-value=0.063 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.45 E-value=0.065 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.44 E-value=0.057 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 338
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.41 E-value=0.095 Score=52.68 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=25.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWV 228 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 228 (959)
-.+++|+|+.|+|||||++.+..- .......+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 468999999999999999999873 2233445554
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.39 E-value=0.07 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.38 E-value=0.067 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.36 E-value=0.051 Score=51.88 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 342
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.29 E-value=0.089 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888864
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.28 E-value=0.082 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|+|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.25 E-value=0.11 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.. .+++|+|+.|+|||||.+.+..-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999999873
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.24 E-value=0.072 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.20 E-value=0.12 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999976
No 347
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.13 E-value=0.064 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 348
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.09 E-value=0.11 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 349
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.05 E-value=0.11 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999976
No 350
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.04 E-value=0.079 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999863
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.03 E-value=0.68 Score=51.33 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD 235 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 235 (959)
....+++|+|..|+|||||++.+... .+ .....+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 35679999999999999999999873 22 223455565444444
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.99 E-value=0.077 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.97 E-value=0.055 Score=52.15 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+|.|+|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.95 E-value=0.085 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.95 E-value=0.082 Score=53.93 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.94 E-value=0.17 Score=53.32 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.92 E-value=0.085 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 358
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.90 E-value=0.12 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.89 E-value=0.074 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 360
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.85 E-value=0.21 Score=44.81 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=43.2
Q ss_pred cEEeeccCCCcc--ccchhhccCCCCcEEecCCCcCCcccchh-hhccccCCeeecCCcc
Q 002154 618 KYLSLAHQEAIE--RLPEALCELYNLERLNVSGCSHLRELPRG-IGKLRKLMYLYNAGTD 674 (959)
Q Consensus 618 ~~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 674 (959)
..++.+++. ++ .+|..+. .+|++|+|++|. ++.+|.+ +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 477888887 77 8886543 479999999987 9999865 5789999999999884
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.79 E-value=0.063 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 362
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.79 E-value=0.1 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.74 E-value=0.091 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.72 E-value=0.095 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 365
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.68 E-value=0.37 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...++.|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888763
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.68 E-value=0.082 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.67 E-value=0.13 Score=66.77 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----CcccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGS----AKELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~ 266 (959)
..++|.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+. .......++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 5679999999999999999888763 222223567888888776665 33443110 011223345555555
Q ss_pred HHHhcCcEEEEEeccCC
Q 002154 267 EYVVEGEKFLLVLDDVW 283 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~ 283 (959)
+..-..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44234677899999983
No 368
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.64 E-value=0.42 Score=49.81 Aligned_cols=24 Identities=38% Similarity=0.318 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999873
No 369
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.58 E-value=0.095 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999986
No 370
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.56 E-value=0.39 Score=51.04 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEeCCC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQK-RIWVCVSEP 233 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~ 233 (959)
--++++.+..- .+-..++|+|..|+|||+|++.+.+.... .+-+. ++++-+.+.
T Consensus 162 GiraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred cchhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 34677877643 24467899999999999999988874211 12222 245666553
No 371
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.56 E-value=0.078 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.097 Score=52.07 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 170 RQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 170 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++..+++...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555432 25789999999999999999888764
No 373
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.51 E-value=0.14 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||++.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999999873
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.50 E-value=0.11 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.49 E-value=0.094 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.48 E-value=0.13 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 377
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.48 E-value=0.14 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.48 E-value=0.061 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=17.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.48 E-value=0.12 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
No 380
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.43 E-value=0.14 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 381
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.15 Score=49.36 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998874
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.37 E-value=0.091 Score=50.98 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 383
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.36 E-value=0.14 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 384
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.35 E-value=0.067 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998773
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.32 E-value=0.12 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999873
No 386
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.31 E-value=0.15 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999873
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.27 E-value=0.098 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.26 E-value=0.14 Score=49.43 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=26.9
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+..+..++.. .+....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666542 123456899999999999999888873
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.25 E-value=0.099 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 390
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.21 E-value=0.43 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...++|.|+|.+|+||||++..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888763
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.19 E-value=0.15 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 392
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.17 E-value=0.13 Score=54.40 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998873
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.15 E-value=0.18 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.09 E-value=0.098 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.99 E-value=0.12 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 396
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.98 E-value=0.11 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347899999999999999998874
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.94 E-value=0.17 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999763
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.92 E-value=0.11 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 399
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.90 E-value=0.092 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+++|+|+.|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 400
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.90 E-value=0.36 Score=52.14 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=33.5
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|....+.++.+.+..... ....|.|.|..|.||+++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 3578887777776666543221 2234679999999999999999874
No 401
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.86 E-value=0.14 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...++.|+|++|+||||++..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4689999999999999999998873
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.84 E-value=0.11 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.84 E-value=0.1 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.83 E-value=0.24 Score=53.30 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..++.+.+... .++..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 24678999999999999999988865
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.83 E-value=0.08 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=16.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHh-c
Q 002154 192 PRIISLVGMGGIGKTTLAQFAY-N 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~-~ 214 (959)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.80 E-value=0.17 Score=55.54 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=36.1
Q ss_pred cccccchhHHHHHHHHHhcc--------CCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCE--------SSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889888888887666321 0000113456889999999999999999873
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.79 E-value=0.12 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.76 E-value=0.14 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 409
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.74 E-value=0.71 Score=48.81 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.++.|.|.+|+||||||..++.+... +=..++|++.. -+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 4468999999999999999888764222 22345676654 45677777776554
No 410
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.73 E-value=0.62 Score=51.35 Aligned_cols=64 Identities=27% Similarity=0.190 Sum_probs=44.6
Q ss_pred HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHH
Q 002154 176 ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFD-EFRIARAIIE 245 (959)
Q Consensus 176 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~ 245 (959)
+.++.|..- .+-+.++|.|..|+|||+|++.+.+.. .+.+-+..+++-+.+... ..++.+++.+
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 456666533 245678999999999999998887741 223456788888887654 4556666654
No 411
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.67 E-value=0.18 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999873
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.67 E-value=0.14 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999873
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.64 E-value=0.065 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 414
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.60 E-value=0.16 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999984
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.58 E-value=0.12 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.57 E-value=0.096 Score=53.06 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 417
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.55 E-value=0.68 Score=51.52 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 45689999999999999998887642211 113467777653 4566777666544
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.43 E-value=0.13 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998873
No 419
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.43 E-value=0.18 Score=51.68 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.....++.+.|.||+||||++..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34578999999999999999999875
No 420
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.42 E-value=0.13 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 421
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.40 E-value=0.65 Score=48.32 Aligned_cols=24 Identities=46% Similarity=0.498 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999888763
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.33 E-value=0.14 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999988
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.24 E-value=0.22 Score=56.94 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC--------------CCCcccc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKP--------------GSAKELV 256 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~--------------~~~~~~~ 256 (959)
.-.+++|+|+.|+|||||++.++......+ ..++++...+. ...+...+ ..++. .......
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 446899999999999999999886322111 12355554432 23333222 11210 0111122
Q ss_pred cHHHHHHHHHHHHhcCcEEEEEeccCCCCCcC-----CchhHhhhcCC-CCCCCEEEEeccch
Q 002154 257 EFQSLMQHIQEYVVEGEKFLLVLDDVWNEDYG-----KWEPFYNCLKS-SPHGSKLLITTRKE 313 (959)
Q Consensus 257 ~~~~~~~~l~~~~l~~k~~LlVlDdv~~~~~~-----~~~~l~~~l~~-~~~gs~iivTtr~~ 313 (959)
+..+.+..+....+..++-+||+|-...-+.. ....+...+.. ...|..||+||...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44555555555546677889999944222221 12222222221 13466788887653
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.21 E-value=0.14 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999983
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.09 E-value=1.3 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 426
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.05 E-value=0.16 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 427
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.05 E-value=0.16 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999987
No 428
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.03 E-value=0.15 Score=51.67 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999873
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.99 E-value=0.14 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 430
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.97 E-value=0.15 Score=49.00 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 431
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.95 E-value=0.15 Score=52.07 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.94 E-value=0.17 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..+|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.84 E-value=0.16 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 434
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.81 E-value=0.19 Score=53.06 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+++|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988763
No 435
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.76 E-value=0.16 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.73 E-value=0.2 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 457999999999999999999876
No 437
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.71 E-value=0.2 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 438
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.68 E-value=0.81 Score=49.78 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 166 EIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 166 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.++|....++++.+.+..-.. .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 466777777777776654321 2333 589999999999999999763
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.67 E-value=0.16 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 440
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.65 E-value=0.47 Score=52.96 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAII 244 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 244 (959)
.-.++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 45689999999999999999888742221 112467777554 4456665554
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.59 E-value=0.2 Score=51.77 Aligned_cols=24 Identities=38% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 442
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.59 E-value=0.17 Score=49.62 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+|.|.|++|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 443
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.58 E-value=0.21 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999976
No 444
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.52 E-value=0.14 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 445
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.52 E-value=0.26 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999987
No 446
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.51 E-value=0.19 Score=57.83 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+++.|.|.+|.||||++..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999888763
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.51 E-value=0.21 Score=58.13 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 165 SEIFGRQKEKNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 165 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888887777432 47899999999999999999874
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.43 E-value=0.17 Score=50.07 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 449
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.41 E-value=0.93 Score=51.36 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEAL 247 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 247 (959)
.-.++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 45689999999999999998887642211 113467777655 4667777665544
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.39 E-value=0.17 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 451
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.29 E-value=0.65 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.1
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 002154 193 RIISLVGMGGIGKTTLAQFAY 213 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~ 213 (959)
+.+.|+|+.|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 578999999999998765443
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.28 E-value=0.21 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-+.|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999874
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.17 E-value=0.19 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.180 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 454
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.16 E-value=0.5 Score=47.73 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAI 243 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 243 (959)
.-.++.|.|.+|+|||+||.+++.+. ....-..+++++... +...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 34689999999999999998765421 122223456666554 344554443
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.04 E-value=0.2 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999999886
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.01 E-value=0.21 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.93 E-value=0.25 Score=54.49 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...+|.|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.91 E-value=0.11 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=18.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.89 E-value=0.22 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999873
No 460
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.89 E-value=0.31 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999976
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.87 E-value=0.24 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 462
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.78 E-value=0.21 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 463
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.77 E-value=0.24 Score=52.16 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=27.5
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC
Q 002154 189 QKGPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE 232 (959)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 232 (959)
....++|+|+|-||+||||+|..+... ....=..++-|+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 346789999999999999999887763 222112345555543
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.73 E-value=0.29 Score=53.41 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 567999999999999999999987
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.66 E-value=0.22 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.63 E-value=0.24 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999886
No 467
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.59 E-value=1.6 Score=52.90 Aligned_cols=123 Identities=18% Similarity=0.094 Sum_probs=63.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccc---eeEEEEeCCC-------CCH-----------HHHHHHHHHHhCCC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQ---KRIWVCVSEP-------FDE-----------FRIARAIIEALKPG 250 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~v~~~-------~~~-----------~~~~~~i~~~l~~~ 250 (959)
-.+++|+|+.|+|||||++.+..- .+.+ ++ ..-.+.+.+. .+. .+-..++++.++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 358999999999999999999831 1111 10 0001222221 111 12234455555421
Q ss_pred C-----CcccccHHHHHHHHHHHHhcCcEEEEEeccCCCC-CcCCchhHhhhcCCCCCCCEEEEeccchhHHHh
Q 002154 251 S-----AKELVEFQSLMQHIQEYVVEGEKFLLVLDDVWNE-DYGKWEPFYNCLKSSPHGSKLLITTRKETVALI 318 (959)
Q Consensus 251 ~-----~~~~~~~~~~~~~l~~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 318 (959)
. .....+-.+.++......+-.++=+|+||+--+. |...-..+...+.. .|..||++|.+......
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 1 1112233333322222225567779999986331 22223334444544 46678888888666554
No 468
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.56 E-value=0.32 Score=46.04 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667899999999999999999874
No 469
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.41 E-value=0.46 Score=52.46 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=54.4
Q ss_pred HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEeCCCCC-HHHHHHHHHHHhCCCC-
Q 002154 176 ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLA-QFAYNNDSVKRNFQK-RIWVCVSEPFD-EFRIARAIIEALKPGS- 251 (959)
Q Consensus 176 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~~~~~i~~~l~~~~- 251 (959)
+.++.|..- .+-..++|+|..|+|||+|| ..+.+.. .-+. .+++-+.+... ..++.+.+...=....
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 456666543 24456889999999999995 5777742 2443 46777777543 3445555543211010
Q ss_pred -----CcccccHH---------HHHHHHHHHHhcCcEEEEEeccC
Q 002154 252 -----AKELVEFQ---------SLMQHIQEYVVEGEKFLLVLDDV 282 (959)
Q Consensus 252 -----~~~~~~~~---------~~~~~l~~~~l~~k~~LlVlDdv 282 (959)
..+..... .+.+.++. +|+.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd---~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMY---KGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH---cCCcEEEEEecH
Confidence 11111111 12233332 489999999998
No 470
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.38 E-value=0.35 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999873
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.36 E-value=0.26 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 472
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.3 Score=49.33 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSE 232 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 232 (959)
.-.++.|+|++|+||||||..++.. ....=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3468999999999999999877653 211223567777554
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.22 E-value=0.22 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.++.|+|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
No 474
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.19 E-value=0.36 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999999999873
No 475
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.19 E-value=0.36 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 468999999999999999999973
No 476
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.15 E-value=0.31 Score=51.90 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWV 228 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 228 (959)
-.+++|+|+.|+|||||.+.++.- .......+++
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl---~~p~~G~I~~ 59 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF---HVPDSGRILL 59 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHcC---CCCCCcEEEE
Confidence 468999999999999999999873 2233444544
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.10 E-value=1.2 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|.|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999876
No 478
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.07 E-value=0.37 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3468999999999999999999873
No 479
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.06 E-value=0.26 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.-.+++|+|+.|+|||||++.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999874
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.04 E-value=0.27 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998764
No 481
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.03 E-value=0.24 Score=46.18 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 482
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.97 E-value=0.38 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 368999999999999999999873
No 483
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.97 E-value=0.27 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002154 193 RIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.+.+|+|+.|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998864
No 484
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.95 E-value=0.38 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
.-.+++|+|+.|+|||||.+.++.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 346899999999999999999987
No 485
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.94 E-value=0.81 Score=59.48 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSA----KELVEFQSLMQHIQ 266 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 266 (959)
.-+++.|+|++|+||||||.+++... ...=..++|++....++... ++.++.... ....+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999998887742 22223578998888776542 455542211 12345566666665
Q ss_pred HHHhcCcEEEEEeccCCC
Q 002154 267 EYVVEGEKFLLVLDDVWN 284 (959)
Q Consensus 267 ~~~l~~k~~LlVlDdv~~ 284 (959)
...-+.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 442245566999998843
No 486
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.93 E-value=0.3 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....|+|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.88 E-value=0.28 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.211 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 488
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.82 E-value=0.37 Score=50.42 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 174 KNELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 174 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
++++.+.+. -.+++|+|+.|+|||||.+.+. .
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-H
Confidence 566666662 3589999999999999999998 5
No 489
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.75 E-value=0.35 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
+...|+|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 490
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.63 E-value=0.51 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002154 190 KGPRIISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~v~~ 214 (959)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988875
No 491
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.61 E-value=1.4 Score=42.32 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=56.7
Q ss_pred CCCCccEEEecCC-cch--hhhhhhhHHhccCCcccEEEccccCccccccccccccccccccCCccEEeeccCCCcc---
Q 002154 556 GLRGLRSLLVESD-EYS--WFSEVLPQLFDKLTCLRALKLEVRQPWWCQNFIKDIPENIEKLLHLKYLSLAHQEAIE--- 629 (959)
Q Consensus 556 ~~~~LrsL~~~~~-~~~--~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~i~--- 629 (959)
.-+.|++|.+.++ ... .... +-..+..-..|+.|+|+++.+- ......+.+.+..=..|++|+|++|. |+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~-la~aL~~N~~L~~L~L~~n~ig--d~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRS-LIEAACNSKHIEKFSLANTAIS--DSEARGLIELIETSPSLRVLNVESNF-LTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHH-HHHHHTTCSCCCEEECTTSCCB--HHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHH-HHHHHhhCCCcCEEEccCCCCC--hHHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence 4456777777654 321 1111 2333555567777777773220 00112233444445667777777776 54
Q ss_pred --ccchhhccCCCCcEEecCCCcC--Cc-----ccchhhhccccCCeeecCCc
Q 002154 630 --RLPEALCELYNLERLNVSGCSH--LR-----ELPRGIGKLRKLMYLYNAGT 673 (959)
Q Consensus 630 --~lp~~i~~L~~L~~L~l~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 673 (959)
.+-+.+..-..|++|+|++|.. +. .+-..+..-+.|+.|+++.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2333444445577777765421 21 12223444456666666543
No 492
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.55 E-value=0.36 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcC
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 493
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.50 E-value=0.55 Score=51.19 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHhccCCcCCCCCEEEEEEcCCCChHHHHHHHHhcCcccc-cccc-eeEEEEeCCCC-CHHHHHHHHHH
Q 002154 176 ELVNRLLCESSKEQKGPRIISLVGMGGIGKTTLAQFAYNNDSVK-RNFQ-KRIWVCVSEPF-DEFRIARAIIE 245 (959)
Q Consensus 176 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~v~~~~-~~~~~~~~i~~ 245 (959)
+.++.|..-. +-..++|.|..|+|||+|+.++.+..... ++-+ ..+++-+.+.. ...++.+++.+
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 4556554332 33457899999999999999998853321 1111 45677776653 34455555444
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.42 E-value=0.28 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 002154 194 IISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.41 E-value=0.31 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcC
Q 002154 192 PRIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 496
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.24 E-value=3.1 Score=56.71 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=50.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--ccccHHHHHHHHHHHHh
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEALKPGSAK--ELVEFQSLMQHIQEYVV 270 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~~l 270 (959)
+-|.++|+.|+|||++++.+... ..+ + ..+.++.+...+...++..+-..+...... +.. ..- .
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~--l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~---------~~p-~ 1370 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRA--FPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV---------LRP-T 1370 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGG--CTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE---------EEE-S
T ss_pred CcEEEECCCCCCHHHHHHHHHHh--CCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc---------cCC-C
Confidence 45789999999999998777652 211 2 246788888888877777664444211000 000 000 2
Q ss_pred -cCcEEEEEeccCCCCCcC
Q 002154 271 -EGEKFLLVLDDVWNEDYG 288 (959)
Q Consensus 271 -~~k~~LlVlDdv~~~~~~ 288 (959)
.||+.++++||+.-...+
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D 1389 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTD 1389 (3245)
T ss_dssp STTCEEEEEETTTTCCCCC
T ss_pred cCCceEEEEecccCCCCcc
Confidence 378999999999544433
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.20 E-value=0.28 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 498
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.18 E-value=1.2 Score=49.31 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 002154 191 GPRIISLVGMGGIGKTTLAQFAYNNDSVKRNFQKRIWVCVSEPFDEFRIARAIIEA 246 (959)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 246 (959)
.-.++.|.|.+|+||||||..++.+.... =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 45689999999999999998887643222 12466766554 344555555544
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.16 E-value=0.31 Score=45.65 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002154 194 IISLVGMGGIGKTTLAQFAYN 214 (959)
Q Consensus 194 vv~I~G~gGiGKTtLa~~v~~ 214 (959)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999865
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.15 E-value=0.37 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 002154 193 RIISLVGMGGIGKTTLAQFAYNN 215 (959)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~v~~~ 215 (959)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
Done!