BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002156
(959 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF--ECSKLESIAERLDNN 722
L L I +C LT ELP L S + L +L E + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRLEIYG 780
+L+ + I + L L +H+L +L+E+++ C L ++P GG A L RL +
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 781 CERLEALPKGLHNLTSLQELRIGRG----VELPSLEEEDGLPTN 820
C L LP +H LT L++L + RG LPSL + LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQ--LPAN 303
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 3/164 (1%)
Query: 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLE 143
+ F+L L+ ++ + ELPD+ L L L+ +RALP S+ L L L +
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 144 DCRELKKLCADMGNLIKLHHHNN-SNTDSLEEMPLGIGKLTC-LQTLCNFVVGKDSGSGL 201
C EL +L + + H N SL GI L + L N K S L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 202 SELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245
S L +H LE L + N G+ LK L+L+
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILK 261
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 706 VFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE 765
+ + L + + LE +++ L+ LP+ + +L +L+E+ I C L PE
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE 168
Query: 766 G-----------GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE 814
GL + +RLE G + +LP + NL +L+ L+I R L +L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTG---IRSLPASIANLQNLKSLKI-RNSPLSALGPA 224
Query: 815 DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLP----ASL 870
L+ LD+ G ++ F G + L+RL ++ C ++++ PL L
Sbjct: 225 IHHLPKLEELDLRG----CTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQL 279
Query: 871 TSLEISFFPNLERLSSSIVDL 891
L++ NL RL S I L
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQL 300
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLED 144
L LQ LR L I LP SI +L+ L+ L + + + AL +++ L L L L
Sbjct: 182 LVNLQSLR---LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 145 CRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
C L+ G L + +L +PL I +LT L+ L
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 294 SSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDP 345
++ NL +LK +N + P++ LP L+ L +RG + ++ F G P
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 533 RLEYLTLSGCQGLVKLPQXXXXXXXXREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDA 591
+LE L L GC L P + +++ CS+L++ P ++ ++L+K+++ C
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 592 LKSLP 596
L LP
Sbjct: 290 LSRLP 294
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 93 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLC 152
A LR + + PD L +L++ + + LP++ + L TL L L+ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 153 ADMGNLIKLHHHNNSNTDSLEEMP 176
A + +L +L + L E+P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
>pdb|1CFR|A Chain A, Crystal Structure Of Citrobacter Freundii Restriction
Endonuclease Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 3 DLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLR 62
+LI ++ +I R E + K SFS N+ LS I E + K F D +++H++
Sbjct: 127 NLITSNPDFSIIDIRGRREELKSMLKDISFS-NIS-LSTISEIDNLYKNFIDYAELEHIK 184
Query: 63 TFLPV--TLSNSSRGHLAY--SILPKLFKLQRLRAFSLR--GYHIFELPDSIGDLRYLRY 116
+FL V T R LA+ S++ L+ + R +++ G + SIG+ +
Sbjct: 185 SFLSVKTTFRPDRRLQLAHEGSLMKALYTHLQTRTWTINPTGIRYYAAATSIGNADVIG- 243
Query: 117 LNLSGTH----IRALPES-VNKLYNLHTLL 141
L TH +++LP+S V++++ ++++L
Sbjct: 244 LKTVATHSITDVKSLPQSAVDEIFKINSVL 273
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 79 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138
++I +FK L L G + ELP I +L LR L+LS + +LP + + L
Sbjct: 237 FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 139 TLLLEDCRELKKLCADMGNLIKLH 162
D + L + GNL L
Sbjct: 297 YFYFFD-NMVTTLPWEFGNLCNLQ 319
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 25/178 (14%)
Query: 736 LKILPSG-LHNLCQLQEIEIWN--CGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKG-L 791
L ++PSG L +L+E+ + N ++ S+ +P LMRL++ ++LE + +G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLMRLDLGELKKLEYISEGAF 192
Query: 792 HNLTSLQELRIG--RGVELPSLEEEDGLPTNLQSLDIWGN--IEIWKSMIERGRGFHGFS 847
L +L+ L +G ++P+L GL + L++ GN EI R FHG S
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGL----EELEMSGNHFPEI------RPGSFHGLS 242
Query: 848 SLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSSI-VDLQILTELRLYH 901
SL++L + ++ +F ASL L ++ NL L + L+ L EL L+H
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLA-HNNLSSLPHDLFTPLRYLVELHLHH 299
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 58 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYL 117
++HL + LS + + S+L +L +LQ ++ G P + L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 118 NLSGTHIRALPESV-NKLYNLHTLLLE------DCREL 148
N+SG + L ESV + + NL TL+L+ DCR L
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNL 137
+S LPKL +++ +A +L ++ P++ +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 74 VFSNLPKLHEIRIEKANNL----LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSL 128
Query: 138 HTLLLE 143
+LL+
Sbjct: 129 QKVLLD 134
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNL 137
+S LPKL +++ +A +L ++ P++ +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 74 VFSNLPKLHEIRIEKANNL----LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSL 128
Query: 138 HTLLLE 143
+LL+
Sbjct: 129 QKVLLD 134
>pdb|2Z84|A Chain A, Insights From Crystal And Solution Structures Of Mouse
Ufsp1
Length = 218
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 128 PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQT 187
P ++ L ++H L C + +L G+ + H+ D L++ G G T LQT
Sbjct: 1 PSTLELLKDVHLGLPVPCHDPARLALLSGHYLYYHY----GCDGLDDRGWGCGYRT-LQT 55
Query: 188 LCNFVVGKDSGSGLSELKLLMHLRGALE 215
LC++ G+ SG + L L+GALE
Sbjct: 56 LCSWPGGQSSG-----VPGLPALQGALE 78
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 88 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCR 146
L +R +L G + ++ ++ +L L YL L+G +++LP V +KL NL L+L +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 147 ELKKL----CADMGNLIKLHHHNNSNTDSLEEMPLGI-GKLTCLQTL 188
+L+ L + NL L+ ++N L+ +P G+ KLT L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGVFDKLTNLTRL 162
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 88 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCR 146
L +R +L G + ++ ++ +L L YL L+G +++LP V +KL NL L+L +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 147 ELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGI-GKLTCLQTL 188
+L+ L + + + + N + L+ +P G+ KLT L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,122,541
Number of Sequences: 62578
Number of extensions: 1151802
Number of successful extensions: 2625
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2595
Number of HSP's gapped (non-prelim): 50
length of query: 959
length of database: 14,973,337
effective HSP length: 108
effective length of query: 851
effective length of database: 8,214,913
effective search space: 6990890963
effective search space used: 6990890963
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)