Query 002156
Match_columns 959
No_of_seqs 515 out of 4229
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.1E-42 8.9E-47 427.0 26.1 98 89-188 69-169 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-42 7E-47 428.0 24.1 528 59-832 69-607 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.8E-31 3.9E-36 263.9 -9.5 127 702-831 414-540 (565)
4 PLN03210 Resistant to P. syrin 99.9 1.7E-26 3.6E-31 286.0 27.7 186 1-188 490-686 (1153)
5 KOG0618 Serine/threonine phosp 99.9 6.8E-29 1.5E-33 271.4 -6.8 243 532-831 241-488 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 4.8E-29 1E-33 246.8 -9.4 253 59-332 45-309 (565)
7 KOG4194 Membrane glycoprotein 99.9 1E-26 2.2E-31 241.0 2.8 359 532-923 78-447 (873)
8 KOG4194 Membrane glycoprotein 99.9 1.6E-26 3.5E-31 239.4 3.3 362 478-901 82-448 (873)
9 KOG0618 Serine/threonine phosp 99.9 2.9E-26 6.2E-31 251.0 -4.0 104 80-185 35-139 (1081)
10 PLN03210 Resistant to P. syrin 99.9 5.3E-23 1.1E-27 255.0 22.2 313 532-909 589-910 (1153)
11 KOG0444 Cytoskeletal regulator 99.9 8.3E-25 1.8E-29 228.2 -5.7 325 54-573 50-379 (1255)
12 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.9E-29 226.6 -5.4 367 473-909 6-379 (1255)
13 KOG4658 Apoptotic ATPase [Sign 99.9 4.2E-22 9E-27 232.7 12.3 189 1-198 483-680 (889)
14 KOG4237 Extracellular matrix p 99.7 2.6E-18 5.7E-23 171.1 -1.2 114 78-194 58-175 (498)
15 PRK15387 E3 ubiquitin-protein 99.6 7.6E-15 1.7E-19 168.2 15.6 256 533-904 202-457 (788)
16 KOG0617 Ras suppressor protein 99.6 8E-17 1.7E-21 141.5 -4.8 130 53-190 27-157 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 4.2E-14 9.1E-19 162.2 14.8 78 89-176 201-278 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.5 1.1E-14 2.5E-19 170.8 10.2 150 53-211 517-671 (889)
19 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.7E-20 152.3 0.9 115 78-194 79-199 (498)
20 PRK15370 E3 ubiquitin-protein 99.5 9.5E-14 2.1E-18 160.6 10.7 225 532-831 199-427 (754)
21 KOG0617 Ras suppressor protein 99.5 1.5E-15 3.3E-20 133.5 -4.2 148 35-193 34-183 (264)
22 PRK15370 E3 ubiquitin-protein 99.5 1.6E-13 3.4E-18 158.8 10.2 58 557-622 179-236 (754)
23 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-13 3.7E-18 148.2 1.7 158 699-856 137-316 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.9E-13 4.1E-18 147.9 0.8 35 868-902 250-288 (319)
25 PF14580 LRR_9: Leucine-rich r 98.9 6.9E-10 1.5E-14 104.1 4.7 131 53-194 13-151 (175)
26 KOG4341 F-box protein containi 98.9 3.4E-11 7.4E-16 122.1 -5.1 300 533-853 139-458 (483)
27 COG4886 Leucine-rich repeat (L 98.9 2.3E-09 5E-14 119.3 6.6 108 82-191 109-217 (394)
28 PF14580 LRR_9: Leucine-rich r 98.9 8.8E-10 1.9E-14 103.4 2.3 102 85-190 15-120 (175)
29 KOG4341 F-box protein containi 98.8 1.2E-10 2.6E-15 118.3 -4.7 261 496-782 161-437 (483)
30 KOG0532 Leucine-rich repeat (L 98.8 1.2E-10 2.6E-15 122.7 -5.3 107 79-188 88-194 (722)
31 KOG3207 Beta-tubulin folding c 98.8 7.2E-10 1.6E-14 113.3 -0.8 130 770-903 196-337 (505)
32 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 111.9 0.2 110 699-808 222-339 (505)
33 KOG1259 Nischarin, modulator o 98.7 2.1E-09 4.7E-14 104.0 -0.2 132 741-904 278-411 (490)
34 KOG0532 Leucine-rich repeat (L 98.7 5.4E-10 1.2E-14 117.9 -4.8 106 86-194 72-177 (722)
35 PRK15386 type III secretion pr 98.7 8.9E-08 1.9E-12 100.9 10.7 167 717-930 46-215 (426)
36 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.5E-13 112.5 5.3 125 55-188 112-237 (394)
37 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.6E-13 99.0 1.4 103 84-190 302-406 (490)
38 PLN03150 hypothetical protein; 98.6 5.2E-08 1.1E-12 113.2 6.5 107 725-831 420-527 (623)
39 PF13855 LRR_8: Leucine rich r 98.5 7.1E-08 1.5E-12 74.1 4.1 57 89-145 1-59 (61)
40 PLN03150 hypothetical protein; 98.5 1.1E-07 2.5E-12 110.4 6.0 113 700-812 419-532 (623)
41 PRK15386 type III secretion pr 98.4 2.1E-06 4.5E-11 90.8 11.6 115 699-831 52-168 (426)
42 PF13855 LRR_8: Leucine rich r 98.4 4.3E-07 9.3E-12 69.7 5.0 58 748-806 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.4 8.1E-08 1.8E-12 106.8 1.1 126 78-207 84-210 (414)
44 KOG1909 Ran GTPase-activating 98.3 1.7E-07 3.8E-12 93.7 1.7 189 716-904 85-310 (382)
45 KOG2120 SCF ubiquitin ligase, 98.3 2.6E-08 5.7E-13 96.8 -5.5 178 700-903 186-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.2 2.3E-08 4.9E-13 97.2 -6.7 154 769-926 208-374 (419)
47 KOG1909 Ran GTPase-activating 98.2 2.7E-07 6E-12 92.3 0.6 227 699-927 30-310 (382)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.9E-11 60.8 3.6 40 89-128 1-40 (44)
49 KOG0531 Protein phosphatase 1, 98.1 4.3E-07 9.4E-12 101.0 -1.3 106 86-195 69-174 (414)
50 PF12799 LRR_4: Leucine Rich r 97.9 6.3E-06 1.4E-10 57.4 2.5 39 112-151 1-39 (44)
51 KOG4579 Leucine-rich repeat (L 97.9 1.9E-06 4.1E-11 74.1 -1.2 90 86-177 50-140 (177)
52 KOG1859 Leucine-rich repeat pr 97.8 9.7E-07 2.1E-11 96.4 -4.1 118 89-211 164-282 (1096)
53 KOG4579 Leucine-rich repeat (L 97.8 7E-06 1.5E-10 70.7 0.7 103 87-191 25-131 (177)
54 KOG2982 Uncharacterized conser 97.7 3.4E-05 7.5E-10 75.6 4.2 187 721-910 69-267 (418)
55 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.3E-09 68.3 4.7 105 87-194 40-151 (233)
56 KOG1859 Leucine-rich repeat pr 97.4 1.2E-05 2.6E-10 88.1 -3.4 112 53-176 181-295 (1096)
57 KOG2982 Uncharacterized conser 97.4 0.00013 2.9E-09 71.6 3.8 83 531-614 70-155 (418)
58 KOG1947 Leucine rich repeat pr 97.4 1.1E-05 2.5E-10 92.9 -4.6 193 720-931 240-443 (482)
59 KOG3665 ZYG-1-like serine/thre 97.3 0.00014 3E-09 84.5 3.6 82 86-169 145-230 (699)
60 COG5238 RNA1 Ran GTPase-activa 97.2 0.00011 2.4E-09 71.1 1.1 95 81-176 22-136 (388)
61 KOG3665 ZYG-1-like serine/thre 97.1 0.00032 6.9E-09 81.5 3.9 136 112-284 122-262 (699)
62 KOG1947 Leucine rich repeat pr 97.0 0.00013 2.8E-09 84.2 -1.2 19 496-514 185-203 (482)
63 KOG1644 U2-associated snRNP A' 96.9 0.0023 4.9E-08 59.8 6.1 39 791-829 60-98 (233)
64 KOG2739 Leucine-rich acidic nu 96.6 0.00098 2.1E-08 65.1 2.1 103 86-191 40-151 (260)
65 KOG2123 Uncharacterized conser 96.5 0.00027 5.9E-09 68.8 -2.4 59 86-145 38-98 (388)
66 PF00560 LRR_1: Leucine Rich R 96.3 0.0014 3.1E-08 37.7 0.7 18 114-131 2-19 (22)
67 COG5238 RNA1 Ran GTPase-activa 96.2 0.0041 9E-08 60.6 3.8 144 714-858 83-253 (388)
68 KOG2123 Uncharacterized conser 96.2 0.00039 8.4E-09 67.8 -3.2 105 86-193 16-127 (388)
69 KOG2739 Leucine-rich acidic nu 96.1 0.0031 6.8E-08 61.7 2.4 96 82-178 58-161 (260)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0039 8.4E-08 35.9 1.2 22 90-111 1-22 (22)
71 KOG0473 Leucine-rich repeat pr 95.3 0.001 2.2E-08 63.1 -4.3 85 85-170 38-122 (326)
72 PF13306 LRR_5: Leucine rich r 95.1 0.066 1.4E-06 48.5 6.9 104 719-828 8-112 (129)
73 PF13504 LRR_7: Leucine rich r 94.8 0.018 3.8E-07 30.7 1.3 16 113-128 2-17 (17)
74 PF13306 LRR_5: Leucine rich r 94.2 0.11 2.3E-06 47.1 6.0 99 717-821 29-128 (129)
75 KOG0473 Leucine-rich repeat pr 94.1 0.0048 1E-07 58.8 -3.1 87 102-190 31-118 (326)
76 KOG3864 Uncharacterized conser 93.8 0.014 3.1E-07 54.7 -0.5 82 821-906 103-190 (221)
77 PF13504 LRR_7: Leucine rich r 93.7 0.047 1E-06 29.0 1.5 17 89-105 1-17 (17)
78 smart00369 LRR_TYP Leucine-ric 92.1 0.13 2.7E-06 31.1 2.0 21 111-131 1-21 (26)
79 smart00370 LRR Leucine-rich re 92.1 0.13 2.7E-06 31.1 2.0 21 111-131 1-21 (26)
80 KOG3864 Uncharacterized conser 91.7 0.03 6.4E-07 52.7 -1.6 82 772-856 102-185 (221)
81 smart00369 LRR_TYP Leucine-ric 84.6 0.63 1.4E-05 28.0 1.5 20 88-107 1-20 (26)
82 smart00370 LRR Leucine-rich re 84.6 0.63 1.4E-05 28.0 1.5 20 88-107 1-20 (26)
83 smart00365 LRR_SD22 Leucine-ri 77.5 1.8 3.9E-05 26.0 1.7 17 111-127 1-17 (26)
84 smart00367 LRR_CC Leucine-rich 76.0 1.9 4.1E-05 25.9 1.5 14 892-905 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 74.2 2.1 4.5E-05 25.6 1.3 17 113-129 3-19 (26)
86 KOG4308 LRR-containing protein 72.0 0.054 1.2E-06 60.5 -10.6 131 701-831 89-245 (478)
87 KOG4308 LRR-containing protein 70.2 0.069 1.5E-06 59.6 -10.2 159 699-857 115-300 (478)
88 PF13516 LRR_6: Leucine Rich r 66.0 5.1 0.00011 23.4 1.8 12 113-124 3-14 (24)
89 smart00368 LRR_RI Leucine rich 53.7 10 0.00022 23.3 1.7 14 112-125 2-15 (28)
90 KOG3763 mRNA export factor TAP 39.1 12 0.00026 41.6 0.5 42 744-785 241-284 (585)
91 PF05725 FNIP: FNIP Repeat; I 28.6 86 0.0019 21.7 3.3 14 864-877 30-43 (44)
92 KOG3763 mRNA export factor TAP 25.9 44 0.00096 37.4 2.2 80 532-611 218-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-42 Score=427.03 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=54.9
Q ss_pred CceeEEEecCCCCcc-ccccccccCcccEEeccCCCCc-ccchhhh-ccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 89 QRLRAFSLRGYHIFE-LPDSIGDLRYLRYLNLSGTHIR-ALPESVN-KLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.+++.|+|++|.++. +|..|..+++|++|+|++|++. .+|..+. .+.+|++|++++|+....+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 356666666666543 3555666666666666666665 4555543 666666666666544444442 4456666666
Q ss_pred cCCCCcccccccccccccCCcee
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+++|.....+|..++++++|++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEE
Confidence 66665323444445555444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-42 Score=427.97 Aligned_cols=528 Identities=20% Similarity=0.228 Sum_probs=317.8
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCc-cccccc-cccCcccEEeccCCCCc-ccchhhhccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSI-GDLRYLRYLNLSGTHIR-ALPESVNKLY 135 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~~L~L~~n~i~-~lp~~i~~L~ 135 (959)
.+++.|.+.++. +.+.+++.|..+++|++|+|++|.+. .+|..+ ..+++||+|+|++|++. .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 467777776543 24455666788888888888888876 567654 48888888888888776 3443 4678
Q ss_pred cccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhccccee
Q 002156 136 NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALE 215 (959)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 215 (959)
+|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|++|++..+...
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------------- 201 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV------------------- 201 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-------------------
Confidence 8888888886555577877888888888888888745567777777777777754332210
Q ss_pred eccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCC
Q 002156 216 ISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSS 295 (959)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 295 (959)
...+..+..+.+|+.|++++|... ..+|..+..
T Consensus 202 -----------~~~p~~l~~l~~L~~L~L~~n~l~----------------------------------~~~p~~l~~-- 234 (968)
T PLN00113 202 -----------GQIPRELGQMKSLKWIYLGYNNLS----------------------------------GEIPYEIGG-- 234 (968)
T ss_pred -----------CcCChHHcCcCCccEEECcCCccC----------------------------------CcCChhHhc--
Confidence 011112334444455554444331 123444432
Q ss_pred CCCccEEEEecCCCCCCCC-CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCC
Q 002156 296 FSNLVTLKFKNCGMCTALP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQG 374 (959)
Q Consensus 296 l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 374 (959)
+++|++|++++|.+.+.+| .++.+++|++|++++|.....+ +.
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------------------------------------p~ 278 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI------------------------------------PP 278 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC------------------------------------ch
Confidence 5566666666665554444 5556666666666554321111 11
Q ss_pred ccccccccceeccccCccccCCCCC---CCCCccEEEEeccCCc---ccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 375 VVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEEL---SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
....+++|++|++++| .+++.+|. .+++|+.|++++|... ...+..+++|+.|++.+|.
T Consensus 279 ~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------- 343 (968)
T PLN00113 279 SIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-------------- 343 (968)
T ss_pred hHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC--------------
Confidence 1223344444444442 23333332 1112222222221100 0123334445555554444
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+.+.+|..+..+.+|+.+++++|.+.. .++. .+.
T Consensus 344 -------------l~~~~p~~l~~~~~L~~L~Ls~n~l~~-------------------------~~p~-~~~------- 377 (968)
T PLN00113 344 -------------FSGEIPKNLGKHNNLTVLDLSTNNLTG-------------------------EIPE-GLC------- 377 (968)
T ss_pred -------------CcCcCChHHhCCCCCcEEECCCCeeEe-------------------------eCCh-hHh-------
Confidence 233333344444444444444443311 1110 000
Q ss_pred hcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
..++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+| .+..++.|+.|++++|...+.++..+ ..+++|
T Consensus 378 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L 454 (968)
T PLN00113 378 -SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSL 454 (968)
T ss_pred -CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCC
Confidence 01566677777777766677777777777777777776554444 34556677777777776666555544 456666
Q ss_pred cEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcch
Q 002156 608 EILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPA 687 (959)
Q Consensus 608 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 687 (959)
++|++++|.....++.
T Consensus 455 ~~L~L~~n~~~~~~p~---------------------------------------------------------------- 470 (968)
T PLN00113 455 QMLSLARNKFFGGLPD---------------------------------------------------------------- 470 (968)
T ss_pred cEEECcCceeeeecCc----------------------------------------------------------------
Confidence 7766666542221110
Q ss_pred hhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 688 TLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 688 ~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
.+ . .++|+.|++++|...+.+|..+.++++|+.|++++|.+.+.+|..+..+++|++|+|++|...+.+|..+
T Consensus 471 ~~------~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 471 SF------G-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred cc------c-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 00 0 0467788888888777777788888888888888888888888888888888888888888777788888
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|++|++++|++.+.+|..+.++++|+.|++++|++.+.+|.. +.+.++....+.+|+.+
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 88888888888888888888888888888888888888888888843 44445555566666544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-31 Score=263.90 Aligned_cols=127 Identities=21% Similarity=0.202 Sum_probs=99.1
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGC 781 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 781 (959)
.+.-+..++..+.+|..+..+++|..|++++ +.+.++|..++.+..|++|+++.| ....+|........++.+-.++|
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNN 491 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccc
Confidence 3334445666777788888899999999965 566778888888888999999988 45667776666667777777777
Q ss_pred cCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 782 ERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 782 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
++...-|+.+.++.+|..||+.+|.+. .+|..++++++|++|+++||++
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 766555667888899999999988888 6777899999999999999974
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=1.7e-26 Score=286.02 Aligned_cols=186 Identities=18% Similarity=0.251 Sum_probs=122.9
Q ss_pred CchhHHHHHHHHhcCce-------EEEecc--cccccccccCCCeEEEEeecccccccc-cccccccCCcccEEeccccC
Q 002156 1 MHDLINDLAQWAAGEIY-------FRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVK-RFEDLYDIQHLRTFLPVTLS 70 (959)
Q Consensus 1 mHdl~~d~a~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~ 70 (959)
|||++||||+++++++. +.+... ..+.....-.++++++++......... .-.+|.++++||.|.+....
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999997753 111111 000111223456788777654433222 12457788888888776543
Q ss_pred CCCCCcccccccccCCCC-CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhh
Q 002156 71 NSSRGHLAYSILPKLFKL-QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELK 149 (959)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~ 149 (959)
.....+....+|..|..+ .+||.|.+.++.++.+|..| ...+|+.|++++|++..+|..+..+++|++|+|++|+.+.
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 111112234566667554 46888888888888888766 5678888888888888888888888888888888777777
Q ss_pred hhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 150 KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 150 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
.+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 777 47778888888888876566666656555555554
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.8e-29 Score=271.36 Aligned_cols=243 Identities=22% Similarity=0.243 Sum_probs=161.6
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
.+|++++++++... .+|.+++.+.+|+.++..+|.. ..+| .+....+|+.|.+..|. ++.+|... ..+.+|++|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 56666666666553 3456666666677666666643 3344 34445566666666665 33333332 446666666
Q ss_pred EEecCCCCccccCCCC--C-CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcch
Q 002156 611 TISSCHSLTYFGGVQL--P-RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPA 687 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~--~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 687 (959)
++..+ ++..++...+ + .++..+..+ |.++..++- +.
T Consensus 316 dL~~N-~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~---------------------------------~~------ 354 (1081)
T KOG0618|consen 316 DLQSN-NLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPS---------------------------------YE------ 354 (1081)
T ss_pred eehhc-cccccchHHHhhhhHHHHHHhhh-hcccccccc---------------------------------cc------
Confidence 66662 2333332100 0 001111100 011111110 00
Q ss_pred hhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 688 TLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 688 ~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
+..-+.|++|++.+|.......+.+.++.+|+.|++++|++.......+.+++.|++|++|+| +++.+|...
T Consensus 355 -------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv 426 (1081)
T KOG0618|consen 355 -------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTV 426 (1081)
T ss_pred -------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHH
Confidence 001157899999999999988889999999999999998776555566789999999999999 788899999
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~ 831 (959)
..++.|++|...+|.++ .+| .+..+++|+.+|++.|.+... +|... --++|++||++||..
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 99999999999999854 566 788999999999999988744 33222 228999999999974
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=4.8e-29 Score=246.80 Aligned_cols=253 Identities=23% Similarity=0.265 Sum_probs=163.3
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhcccccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~ 138 (959)
..+..+++..+. ...+.+++.++..|.+|++++|.+..+|++++++..++.|+.++|++.++|+.++.+.+|+
T Consensus 45 v~l~~lils~N~-------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHND-------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCc-------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 345555555544 3445555666666666666666666666666666666666666666666666666666666
Q ss_pred EEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCC-CCChhhhhhhhhcccceeec
Q 002156 139 TLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDS-GSGLSELKLLMHLRGALEIS 217 (959)
Q Consensus 139 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~ 217 (959)
.|+.++ +...++|++|+.+..|+.|+..+|+ +..+|.+++.+.+|..|..-++.... ....-.++.|+++.
T Consensus 118 ~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld------ 189 (565)
T KOG0472|consen 118 KLDCSS-NELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD------ 189 (565)
T ss_pred hhhccc-cceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc------
Confidence 666666 4566666666666666666666666 66666666666666655443332211 11222244444433
Q ss_pred cccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhh-----------hHhhhccCCCCCCCcceEEEeccCCCC
Q 002156 218 KLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAE-----------TEMGVLDMLKPHTNLEQFCIKGYEGMK 286 (959)
Q Consensus 218 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~l~~l~~~~~L~~L~l~~~~~~~ 286 (959)
...+.-+..+..+..+.+|+.|+++.|++...+...... .+....+.+..++.+..|+++.|+..+
T Consensus 190 ---~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 190 ---CNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred ---cchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 122334445555666777777777766665444322111 111222345678899999999999999
Q ss_pred CCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCC
Q 002156 287 FPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSR 332 (959)
Q Consensus 287 ~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 332 (959)
+|..+.. +.+|++|++++|.++...+.++++ +|+.|.+.||+.
T Consensus 267 ~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 267 VPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CchHHHH--hhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 9998865 899999999999998888899999 999999999874
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1e-26 Score=240.99 Aligned_cols=359 Identities=18% Similarity=0.159 Sum_probs=226.3
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCC-CCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALP-SKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
+.-++|++++|.+...-+..|.++++|+++++.+| .++.+|.++.. .+++.|++.+|.+.+.-.... ..+|.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhh
Confidence 55666777777776666666777777777777776 55667765554 347777777777655544444 566777777
Q ss_pred EEecCCCCccccCCCCC--CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 611 TISSCHSLTYFGGVQLP--RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
|++. +.+..++...+| .++++|++.+ ..++.+ ....+.++.+|-.|.+++..-- .+|.
T Consensus 155 DLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l----------~~~~F~~lnsL~tlkLsrNrit-------tLp~- 214 (873)
T KOG4194|consen 155 DLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTL----------ETGHFDSLNSLLTLKLSRNRIT-------TLPQ- 214 (873)
T ss_pred hhhh-chhhcccCCCCCCCCCceEEeecc-cccccc----------ccccccccchheeeecccCccc-------ccCH-
Confidence 7777 344555544444 3455555444 122222 1122233445555555553211 1111
Q ss_pred hhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCC
Q 002156 689 LESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 689 l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
-.|..+ +.|+.|+|..|.+-..-.-.|.++++|+.|.+..|.+....-..|..+.++++|+|+.|.....-...+.
T Consensus 215 ---r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 215 ---RSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ---HHhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 112233 4777888877766554455677788888888877776665556677788888888888754333333556
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++++|+.|++++|.+...-+++++-.++|+.|+|++|.+...-+..+..+..|++|+|++|....- ....+.++.+
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l----~e~af~~lss 366 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL----AEGAFVGLSS 366 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH----HhhHHHHhhh
Confidence 778888888888887776677777778888888888888766666677778888888888863321 1145667788
Q ss_pred ccEEEEcccCCC------cccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC-cccccee
Q 002156 849 LRRLEIRGCDDD------MVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL-PSSLLRL 920 (959)
Q Consensus 849 L~~L~l~~~~~~------~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L 920 (959)
|++|+++.+... ...|.-+++|+.|++-+ ++++.||. .+..+..|++||+.+|. +.++-...| +..|++|
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhh
Confidence 888887765322 11223467788888888 57787777 67778888888887754 444444333 4466666
Q ss_pred ecc
Q 002156 921 WIE 923 (959)
Q Consensus 921 ~l~ 923 (959)
.+.
T Consensus 445 v~n 447 (873)
T KOG4194|consen 445 VMN 447 (873)
T ss_pred hhc
Confidence 544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-26 Score=239.43 Aligned_cols=362 Identities=17% Similarity=0.161 Sum_probs=236.9
Q ss_pred EeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCC
Q 002156 478 IIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSS 557 (959)
Q Consensus 478 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 557 (959)
.+++++|++.. ....++..+++|+++++.. +.++.+|..+... .+|+.|+|.+|.+...-...+..++.
T Consensus 82 ~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~s---------ghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 82 TLDLSNNKLSH-IDFEFFYNLPNLQEVNLNK-NELTRIPRFGHES---------GHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeecccccccc-CcHHHHhcCCcceeeeecc-chhhhcccccccc---------cceeEEeeeccccccccHHHHHhHhh
Confidence 45555555422 1222334555555555554 4454444332111 34555555555554444444555555
Q ss_pred cceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEe
Q 002156 558 LREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635 (959)
Q Consensus 558 L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 635 (959)
|+.|||+.| .+..+| .+..-+++++|++++|.+.+.-...| ..+.+|-.|.++.+. ++.+|
T Consensus 151 lrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNr-ittLp------------- 213 (873)
T KOG4194|consen 151 LRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNR-ITTLP------------- 213 (873)
T ss_pred hhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCc-ccccC-------------
Confidence 555555555 222332 22223445555555555433322222 344455555555421 22222
Q ss_pred ecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHH
Q 002156 636 LSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESI 715 (959)
Q Consensus 636 ~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~ 715 (959)
...+-.++.|+.|++..... ...+.+.|.++ ++|+.|.+..|.+...-
T Consensus 214 --------------------~r~Fk~L~~L~~LdLnrN~i-----------rive~ltFqgL-~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 214 --------------------QRSFKRLPKLESLDLNRNRI-----------RIVEGLTFQGL-PSLQNLKLQRNDISKLD 261 (873)
T ss_pred --------------------HHHhhhcchhhhhhccccce-----------eeehhhhhcCc-hhhhhhhhhhcCccccc
Confidence 11222355666666554211 11223344555 59999999999988887
Q ss_pred HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+.|..|.++++|+|..|+....--.++.++++|+.|++++|...+.-+.....+++|++|++++|++...-+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 88899999999999999988777778889999999999999987776677788899999999999999888888999999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc---cccCCCCCce
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV---SFPLPASLTS 872 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~L~~ 872 (959)
+|+.|.|+.|.+...-...|..+++|++|||++|.... ........+.++++|++|++.|+....+ .|.-++.|++
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 99999999999885555567889999999999996432 2223345678899999999999865544 3557889999
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYH 901 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 901 (959)
||+.+|.....-|..|..+ +|++|.+..
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcc
Confidence 9999965444455578777 999998865
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-26 Score=250.98 Aligned_cols=104 Identities=32% Similarity=0.357 Sum_probs=77.6
Q ss_pred cccccC-CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc
Q 002156 80 SILPKL-FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 80 ~~~~~~-~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
..|-.| .+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+ +.+..+|.++..+
T Consensus 35 ~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 35 SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISEL 113 (1081)
T ss_pred cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhh
Confidence 333334 44444888888888888888888888888888888888888888888888888888886 6788888888888
Q ss_pred cccceeecCCCCcccccccccccccCC
Q 002156 159 IKLHHHNNSNTDSLEEMPLGIGKLTCL 185 (959)
Q Consensus 159 ~~L~~L~l~~~~~~~~~p~~i~~L~~L 185 (959)
++|+.|++++|. ...+|.-+..++.+
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAE 139 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHH
Confidence 888888888887 66666545444433
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.3e-23 Score=255.00 Aligned_cols=313 Identities=24% Similarity=0.319 Sum_probs=153.0
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++|+.|.+.+++. ..+|..+ .+.+|++|++.+|. +..++ ....+++|+.|++++|..++.+|.. ..+++|+.|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 3455555544433 3334333 34455555555442 22222 2333445555555554444444432 344555555
Q ss_pred EEecCCCCccccCC-CCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 611 TISSCHSLTYFGGV-QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 611 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
++++|..+..+|.. ....+|+.|++.+|.+++.+|.. ..+++|+.|++++|..+.. + |
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~------------i~l~sL~~L~Lsgc~~L~~-~-----p--- 721 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG------------INLKSLYRLNLSGCSRLKS-F-----P--- 721 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc------------CCCCCCCEEeCCCCCCccc-c-----c---
Confidence 55555544444332 22234555555555555444421 1234455555555544432 1 1
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-------ccCccccCCCCcceeeccccccccc
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-------ILPSGLHNLCQLQEIEIWNCGNLVS 762 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~p~~~~~l~~L~~L~l~~~~~l~~ 762 (959)
..+++|++|+++++.+ ..+|..+ .+++|++|.+.++.... ..+......++|++|++++|+.+..
T Consensus 722 ------~~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 722 ------DISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred ------cccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 1114556666665543 2334332 35556666555433211 0111122345666777776666666
Q ss_pred cCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccC
Q 002156 763 FPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRG 842 (959)
Q Consensus 763 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 842 (959)
+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|.....+|.. .++|+.|++++|..... + ..
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P----~s 864 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-P----WW 864 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-h----HH
Confidence 66666666677777777766666666554 5666777777776655555532 35666666666642111 0 11
Q ss_pred CCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCC
Q 002156 843 FHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 843 ~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
+..++ +|+.|++++|++++.+|..+..+++|+.+++++|..++.++
T Consensus 865 i~~l~---------------------~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFS---------------------NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCC---------------------CCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 22223 34444444455556655555556666666666666555443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=8.3e-25 Score=228.16 Aligned_cols=325 Identities=24% Similarity=0.304 Sum_probs=184.1
Q ss_pred ccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCc--cccccccccCcccEEeccCCCCcccchhh
Q 002156 54 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
.+..+.+|+.|.+..+. ..++...+..++.||.+++..|++. .+|+.+.+|..|.+||||+|++++.|..+
T Consensus 50 EL~~lqkLEHLs~~HN~-------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L 122 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQ-------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL 122 (1255)
T ss_pred HHHHHhhhhhhhhhhhh-------hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh
Confidence 34455555555554433 3444455566666666666666653 35666666666666666666666666666
Q ss_pred hccccccEEeccCcchhhhhhHh-hhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhc
Q 002156 132 NKLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 210 (959)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 210 (959)
..-+++-+|+||+ +.+..+|.. +-+|+.|-.|||++|+ ++.+|+.+.+|..||+|.+..+.
T Consensus 123 E~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP---------------- 184 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNP---------------- 184 (1255)
T ss_pred hhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCCh----------------
Confidence 6666666666666 456666655 5566666666666666 66666666666666666443221
Q ss_pred ccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCC--CCCC
Q 002156 211 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEG--MKFP 288 (959)
Q Consensus 211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p 288 (959)
. ....+..+..++.|++|++++..- ..+|
T Consensus 185 --------------------------------------L-----------~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 185 --------------------------------------L-----------NHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred --------------------------------------h-----------hHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 1 011222233344455555554322 2356
Q ss_pred ccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccc
Q 002156 289 TWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWIS 368 (959)
Q Consensus 289 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 368 (959)
..+.+ +.+|..++++.|.+...+..+-.+++|+.|++++|...+ +.
T Consensus 216 tsld~--l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~------------------------------- 261 (1255)
T KOG0444|consen 216 TSLDD--LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LN------------------------------- 261 (1255)
T ss_pred Cchhh--hhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-ee-------------------------------
Confidence 66644 777777777777665444466777778888887764222 11
Q ss_pred ccCCCCccccccccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 369 HGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 369 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
...+.-.+|++|++++ ++++ .+|.. +..++.|+.|++.+++ +.
T Consensus 262 -----~~~~~W~~lEtLNlSr-NQLt-~LP~a------------------vcKL~kL~kLy~n~Nk-L~----------- 304 (1255)
T KOG0444|consen 262 -----MTEGEWENLETLNLSR-NQLT-VLPDA------------------VCKLTKLTKLYANNNK-LT----------- 304 (1255)
T ss_pred -----ccHHHHhhhhhhcccc-chhc-cchHH------------------HhhhHHHHHHHhccCc-cc-----------
Confidence 0112345677777777 6676 66642 2333444444444443 11
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+. -+|+.+++|..|+++...+|.+- . .|. .+..|
T Consensus 305 -------------Fe-GiPSGIGKL~~Levf~aanN~LE--l-------VPE----glcRC------------------- 338 (1255)
T KOG0444|consen 305 -------------FE-GIPSGIGKLIQLEVFHAANNKLE--L-------VPE----GLCRC------------------- 338 (1255)
T ss_pred -------------cc-CCccchhhhhhhHHHHhhccccc--c-------Cch----hhhhh-------------------
Confidence 11 13455666766666666655441 0 000 11122
Q ss_pred hcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP 573 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~ 573 (959)
++|+.|.++.|... .+|.++.-++.|+.|++..|+++...|
T Consensus 339 ---~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 339 ---VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ---HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 55666666666553 467777777777777777777775544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.3e-24 Score=226.64 Aligned_cols=367 Identities=18% Similarity=0.210 Sum_probs=236.2
Q ss_pred cceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc
Q 002156 473 LEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS 552 (959)
Q Consensus 473 L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 552 (959)
|+-.+-.|+++|.+.....+.-+..+++++.|.+.. .++..+|.+-... .+|++|.+++|+... +...+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~l---------qkLEHLs~~HN~L~~-vhGEL 74 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRL---------QKLEHLSMAHNQLIS-VHGEL 74 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHH---------hhhhhhhhhhhhhHh-hhhhh
Confidence 444556788888887666666677889999999987 6888887764322 688999999988754 44567
Q ss_pred cCCCCcceeeeccCCCc-ccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCC--C
Q 002156 553 LSLSSLREIVIYKCSSL-VSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP--R 628 (959)
Q Consensus 553 ~~l~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~ 628 (959)
+.+|.|+.+.+.+|..- ..+| ++..+..|..|++++|. ++..|... ....++-.|+++++ ++..+|..-+. .
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhH
Confidence 88899999999888543 2344 46667888999999987 56666665 56778888888883 34444432111 1
Q ss_pred CccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeecc
Q 002156 629 SLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708 (959)
Q Consensus 629 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~ 708 (959)
.|-.|++++ ..|+.+| ..+..+ ..|++|+|++
T Consensus 151 DLLfLDLS~-NrLe~LP-----------------------------------------PQ~RRL------~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 151 DLLFLDLSN-NRLEMLP-----------------------------------------PQIRRL------SMLQTLKLSN 182 (1255)
T ss_pred hHhhhcccc-chhhhcC-----------------------------------------HHHHHH------hhhhhhhcCC
Confidence 222333333 2333333 222111 3677777887
Q ss_pred ChhhHHHHHhhcCCCCccEEeecccCCC-cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcc
Q 002156 709 CSKLESIAERLDNNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEAL 787 (959)
Q Consensus 709 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 787 (959)
|+.....-..+-.+++|++|++++.+.. ..+|.++..+.+|..+|++.| .+..+|+.+..+++|+.|++++|++.+.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL- 260 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL- 260 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee-
Confidence 7776655556667777888888776553 356777888888888888876 5666777777788888888888876533
Q ss_pred ccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccccc--
Q 002156 788 PKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-- 865 (959)
Q Consensus 788 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-- 865 (959)
....+...+|++|++|.|+++ .+|..+..++.|+.|.+.+|+...+..+ .+++.+.+|+.+...++.....+-.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhccccccCchhhh
Confidence 234455567888888888777 7777777888888888877765444332 4566666666666665221111111
Q ss_pred CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCC
Q 002156 866 LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 866 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
.+..|+.|.++. +.+..+|.++.-++-|+.||+++|+++---|
T Consensus 337 RC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 223344444444 3455555555556666666666665554443
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=4.2e-22 Score=232.75 Aligned_cols=189 Identities=28% Similarity=0.308 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHhc-----CceEEEecc--cccccccccCCCeEEEEeecccccccccccccccCCcccEEeccccCCCC
Q 002156 1 MHDLINDLAQWAAG-----EIYFRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSS 73 (959)
Q Consensus 1 mHdl~~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~ 73 (959)
|||+|||||.|+|+ ++.+++... .....+...+..+||++++.+.... ...-..+++|++|.+.++..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch--
Confidence 99999999999999 566555542 1112334456789999999876532 33445777999999988641
Q ss_pred CCcccccccccC-CCCCceeEEEecCCC-CccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh
Q 002156 74 RGHLAYSILPKL-FKLQRLRAFSLRGYH-IFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL 151 (959)
Q Consensus 74 ~~~~~~~~~~~~-~~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (959)
....++..| ..|+.||+|||++|. +..+|+++++|.+||||+|+++.|..+|..+++|+.|.+|++.++.....+
T Consensus 558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 135556654 899999999999877 789999999999999999999999999999999999999999997777777
Q ss_pred hHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCC
Q 002156 152 CADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG 198 (959)
Q Consensus 152 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~ 198 (959)
|..+..|.+||+|.+.... ...-...++.+.+|++|....+...+.
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh
Confidence 7667789999999997654 222223366667777776655544433
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=2.6e-18 Score=171.09 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=92.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
..++|..+.. .-..++|..|.|+.||+ +|+.+++||.|||++|+|+.| |++|.+|..|-.|-+.+++.|+.+|..
T Consensus 58 L~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 5566665521 23456788899999965 899999999999999999988 889999999888888887899999987
Q ss_pred hhcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
|++|..|+.|.+.-|. +.-++.+ +..|++|..|.++.+.
T Consensus 136 F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh
Confidence 8999999999998887 7777755 8888888888766554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=7.6e-15 Score=168.20 Aligned_cols=256 Identities=27% Similarity=0.290 Sum_probs=128.0
Q ss_pred ccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEE
Q 002156 533 RLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTI 612 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 612 (959)
+-..|+++++.+. .+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|... .+|. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCccC-cccC-----cccccceeec
Confidence 4556777777554 5665543 36777777776 4445653 3567777777777533 4442 2356677777
Q ss_pred ecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhcc
Q 002156 613 SSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESL 692 (959)
Q Consensus 613 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~ 692 (959)
++|. ++.++. .+.+|+.|++.++ +++.+|
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP----------------------------------------------- 298 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLP----------------------------------------------- 298 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCC-cccccc-----------------------------------------------
Confidence 6643 333332 3334444444332 222222
Q ss_pred ccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCC
Q 002156 693 EVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAK 772 (959)
Q Consensus 693 ~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 772 (959)
..|++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+|.. ..+|++|++++|. +..+|.. .++
T Consensus 299 ---~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~ 363 (788)
T PRK15387 299 ---VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQ-LASLPTL---PSE 363 (788)
T ss_pred ---ccccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCc-cCCCCCC---Ccc
Confidence 011345555555543332 2211 123444455444332 23321 1345555555552 3334432 134
Q ss_pred ccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEE
Q 002156 773 LMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRL 852 (959)
Q Consensus 773 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 852 (959)
|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|..
T Consensus 364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~L--------------------- 414 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRL--------------------- 414 (788)
T ss_pred cceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcC---------------------
Confidence 555555555543 23322 134555555555554 23321 23455555555531
Q ss_pred EEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 853 EIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 853 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
..++ ..+.+|+.|++++ +.++.+|..+..+++|+.|++++|+.
T Consensus 415 -------ssIP-~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 415 -------TSLP-MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -------CCCC-cchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 1111 1233455666666 56778888888888888888888764
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8e-17 Score=141.47 Aligned_cols=130 Identities=25% Similarity=0.333 Sum_probs=108.3
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVN 132 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~ 132 (959)
+-+.++++...|.+..+. ...+|+.+.++++|++|++.+|+|+.+|.+++.+.+||.|+++-|++..+|..||
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 344566677777776665 6778888999999999999999999999999999999999999998888899999
Q ss_pred ccccccEEeccCcchh-hhhhHhhhcccccceeecCCCCcccccccccccccCCceece
Q 002156 133 KLYNLHTLLLEDCREL-KKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
.++.|++|||++|+.- ..+|..|..++.|+-|++++|. .+.+|.++++|++||.|.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 9999999999886543 3578888889999999999998 8888988999998888743
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.2e-14 Score=162.17 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCC
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSN 168 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (959)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. .++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 345678888888888887665 3788888888888888753 467788888774 66666642 35677777777
Q ss_pred CCcccccc
Q 002156 169 TDSLEEMP 176 (959)
Q Consensus 169 ~~~~~~~p 176 (959)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 76 55554
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-14 Score=170.82 Aligned_cols=150 Identities=27% Similarity=0.304 Sum_probs=113.1
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCC--Cccccc-cccccCcccEEeccCC-CCcccc
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYH--IFELPD-SIGDLRYLRYLNLSGT-HIRALP 128 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~-~~~~l~~L~~L~L~~n-~i~~lp 128 (959)
+........|...+..+. ...++.+. ..+.|++|-+.+|. +..++. .|..++.|++|||++| .+.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~-------~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNK-------IEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccc-------hhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 444455677888777765 23333333 33379999999986 666754 5889999999999988 578999
Q ss_pred hhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEec-cCCCCChhhhhhh
Q 002156 129 ESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG-KDSGSGLSELKLL 207 (959)
Q Consensus 129 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L 207 (959)
+.|++|.+||+|++++ +.+..+|.++++|++|.+|++..+.....+|..+..|++||+|.++... ..+...+.++..|
T Consensus 589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 9999999999999999 7899999999999999999999988666665556779999999876554 2223344444444
Q ss_pred hhcc
Q 002156 208 MHLR 211 (959)
Q Consensus 208 ~~L~ 211 (959)
++|+
T Consensus 668 e~L~ 671 (889)
T KOG4658|consen 668 EHLE 671 (889)
T ss_pred cchh
Confidence 4333
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-15 Score=152.30 Aligned_cols=115 Identities=26% Similarity=0.317 Sum_probs=98.7
Q ss_pred ccccccc-CCCCCceeEEEecCCCCccc-cccccccCcccEEeccC-CCCcccch-hhhccccccEEeccCcchhhhh-h
Q 002156 78 AYSILPK-LFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSG-THIRALPE-SVNKLYNLHTLLLEDCRELKKL-C 152 (959)
Q Consensus 78 ~~~~~~~-~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p 152 (959)
+..+|+. |+.+++||.||||.|.|+.| |++|.++..|-.|-+.+ |+|+++|. .|++|..|+.|.+.-| .+.-+ .
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhH
Confidence 6777766 59999999999999999999 89999999998888887 89999985 5799999999999985 45555 4
Q ss_pred HhhhcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 153 ADMGNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 153 ~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
..|..|++|..|.+.+|. +..++.+ +..+..++++.+..+.
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 559999999999999998 8999875 8889999988665544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=9.5e-14 Score=160.60 Aligned_cols=225 Identities=23% Similarity=0.312 Sum_probs=128.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
+.|+.|++++|.+. .+|..+ .++|++|++++|. ++.+|. ..+++|+.|++++|... .+|..+ ..+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSINRIT-ELPERL----PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCc-cccCCh-hhhccccEEECcCCccC-cCChhH----hCCCCEEE
Confidence 56667777666554 345433 2467777777663 444553 22446777777776643 445433 13566666
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++| .++.+|. .++.+|+.|++++| +++.+| .
T Consensus 269 Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP-----------------------------------------~---- 300 (754)
T PRK15370 269 LFHN-KISCLPE-NLPEELRYLSVYDN-SIRTLP-----------------------------------------A---- 300 (754)
T ss_pred CcCC-ccCcccc-ccCCCCcEEECCCC-ccccCc-----------------------------------------c----
Confidence 6643 3444433 23334444444443 222222 0
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
.+|++|+.|++++|.+.. +|..+ .++|+.|++++|.+.+ +|..+ .++|+.|++++|. +..+|..+. +
T Consensus 301 ----~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp--~ 367 (754)
T PRK15370 301 ----HLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ-ITVLPETLP--P 367 (754)
T ss_pred ----cchhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC-CCcCChhhc--C
Confidence 112356666666665543 33222 2567777777776543 55544 3678888888874 445665442 5
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc----CCCCCCcceEEccCCch
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE----DGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~ 831 (959)
+|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|.. .+..+++..|++.+|+.
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 7888888888765 4454443 36888888888776 44443 33457778888888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-15 Score=133.54 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=129.6
Q ss_pred CeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcc
Q 002156 35 NLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 114 (959)
Q Consensus 35 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L 114 (959)
.+.++.+.++....+ .+.+.++.+|++|.++++. ..++|.+++.+++||.|++.-|++..+|..|+.++.|
T Consensus 34 ~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 466777777766443 3677888999999887765 7889999999999999999999998899999999999
Q ss_pred cEEeccCCCCc--ccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEE
Q 002156 115 RYLNLSGTHIR--ALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFV 192 (959)
Q Consensus 115 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 192 (959)
++|||.+|++. .+|..|..++.|+-|.|++ +..+.+|.++++|++|+.|.+.+|. +-++|.+++.|++|++|.+..
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc
Confidence 99999999886 6799999999999999999 6899999999999999999999998 889999999999999997654
Q ss_pred e
Q 002156 193 V 193 (959)
Q Consensus 193 ~ 193 (959)
+
T Consensus 183 n 183 (264)
T KOG0617|consen 183 N 183 (264)
T ss_pred c
Confidence 4
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.6e-13 Score=158.79 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=38.0
Q ss_pred CcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCcccc
Q 002156 557 SLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFG 622 (959)
Q Consensus 557 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 622 (959)
+...|+++++ .++.+|.. .++.++.|++++|.. +.+|..+ .++|++|++++|. ++.++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~L-tsLP~~l----~~nL~~L~Ls~N~-LtsLP 236 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNEL-KSLPENL----QGNIKTLYANSNQ-LTSIP 236 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCCC-CcCChhh----ccCCCEEECCCCc-cccCC
Confidence 5678888887 45566642 356889999988864 4566543 2578888887743 44443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=1.7e-13 Score=148.23 Aligned_cols=158 Identities=21% Similarity=0.162 Sum_probs=88.0
Q ss_pred CCCceEeeccChhh----HHHHHhhcCCCCccEEeecccCCCc----ccCccccCCCCcceeecccccccc----ccCCC
Q 002156 699 PSLKSLGVFECSKL----ESIAERLDNNTSLEIISIGSCGNLK----ILPSGLHNLCQLQEIEIWNCGNLV----SFPEG 766 (959)
Q Consensus 699 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~l~----~~~~~ 766 (959)
++|++|++++|.+. ..++..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.... .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45666666666654 2344455666677777777766553 223334445677777777774321 12233
Q ss_pred CCCCCCccEEEecCCcCcCcccccc-----CCCCccceeeeccCCCCC----CCcccCCCCCCcceEEccCCchhhhhhh
Q 002156 767 GLPCAKLMRLEIYGCERLEALPKGL-----HNLTSLQELRIGRGVELP----SLEEEDGLPTNLQSLDIWGNIEIWKSMI 837 (959)
Q Consensus 767 ~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 837 (959)
+..+++|++|++++|.+.+.....+ ...+.|+.|++++|.+.. .+...+..+++|+.+++++|........
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 4456677777777776554221211 123677777777776651 2233344557777777777765544333
Q ss_pred hhccCCCCC-CCccEEEEcc
Q 002156 838 ERGRGFHGF-SSLRRLEIRG 856 (959)
Q Consensus 838 ~~~~~~~~l-~~L~~L~l~~ 856 (959)
.....+... +.|++|++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 297 LLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHhhcCCchhhcccCC
Confidence 322334444 5666666554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=1.9e-13 Score=147.89 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=16.8
Q ss_pred CCCceEeeccCCCC----cccccccCCCCCCcEEecCCC
Q 002156 868 ASLTSLEISFFPNL----ERLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 868 ~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c 902 (959)
..|++|++++|..- ..+...+..+++|+++++++|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 34555555554211 123334444566666666664
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=6.9e-10 Score=104.07 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=54.3
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCC-CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
+.+.+..++|.|.+.++. ... .+.+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|+|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~-------I~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ-------IST-IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc-------ccc-ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 334455677888887764 233 34564 6889999999999999884 5888999999999999999987666
Q ss_pred -hccccccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceeceEEec
Q 002156 132 -NKLYNLHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
..+++|++|++++| .+..+- ..+..+++|++|++.+|. +...+. -|..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 46899999999984 555543 237788999999999998 666553 26788888888765554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=3.4e-11 Score=122.14 Aligned_cols=300 Identities=16% Similarity=0.275 Sum_probs=148.1
Q ss_pred ccceEEEecCCCCCC--ccccccCCCCcceeeeccCCCcccCC---CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 533 RLEYLTLSGCQGLVK--LPQSSLSLSSLREIVIYKCSSLVSFP---EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.|+.|.+++|.-.+. +-....++|++++|.+.+|..++... ....+++|+.|++..|..++..........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 344555555443331 11233456666666666666544321 1234666777777776666554444333677778
Q ss_pred cEEEEecCCCCccccCCCCC---CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCC
Q 002156 608 EILTISSCHSLTYFGGVQLP---RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684 (959)
Q Consensus 608 ~~L~l~~c~~l~~~~~~~~~---~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 684 (959)
++|++++|+.+..-....+. ..++.+...+|..++.-.+. .....+..+.++++..|..+++.-
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~---------~~~~~~~~i~~lnl~~c~~lTD~~---- 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL---------KAAAYCLEILKLNLQHCNQLTDED---- 285 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH---------HHhccChHhhccchhhhccccchH----
Confidence 88888887766541110000 11333333334332211100 000112234444555555554410
Q ss_pred cchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCccEEeecccCCCccc--CccccCCCCcceeeccccccc
Q 002156 685 LPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSLEIISIGSCGNLKIL--PSGLHNLCQLQEIEIWNCGNL 760 (959)
Q Consensus 685 ~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~l 760 (959)
+ ..+......|+.|+.++|...+ .+..-..++.+|+.|.++.|+..+.. ..--.+++.|+.+++.+|...
T Consensus 286 ----~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 286 ----L--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred ----H--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 0 0011111356666666666543 23333456677777777777654432 111235677777777776443
Q ss_pred cc--cCCCCCCCCCccEEEecCCcCcCcc-----ccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCchh
Q 002156 761 VS--FPEGGLPCAKLMRLEIYGCERLEAL-----PKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 761 ~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.. +-....+|+.|++|.+++|...... ...-..+..|+.+.+++|+.... .-+.+..+++|+.+++.+|..+
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 32 2223345677777777777654333 12223455666677776665422 2233455666776777666655
Q ss_pred hhhhhhhccCCCCCCCccEEE
Q 002156 833 WKSMIERGRGFHGFSSLRRLE 853 (959)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~~L~ 853 (959)
+...+. ..-.++++++...
T Consensus 440 tk~~i~--~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 440 TKEAIS--RFATHLPNIKVHA 458 (483)
T ss_pred hhhhhH--HHHhhCccceehh
Confidence 544433 2224455555543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2.3e-09 Score=119.29 Aligned_cols=108 Identities=30% Similarity=0.436 Sum_probs=86.5
Q ss_pred cccCCCCCceeEEEecCCCCccccccccccC-cccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccc
Q 002156 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIK 160 (959)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 160 (959)
+..+..++.++.|++.++.++++|.....+. +|+.|++++|++..+|..++.+++|+.|++++ +.+..+|...+.+++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhh
Confidence 3344566788888888888888887777775 88888888888888888888888888888888 578888877778888
Q ss_pred cceeecCCCCcccccccccccccCCceeceE
Q 002156 161 LHHHNNSNTDSLEEMPLGIGKLTCLQTLCNF 191 (959)
Q Consensus 161 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 191 (959)
|+.|++++|. +..+|..++.+..|++|...
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 8888888888 88888777666667776543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=8.8e-10 Score=103.36 Aligned_cols=102 Identities=27% Similarity=0.385 Sum_probs=36.7
Q ss_pred CCCCCceeEEEecCCCCcccccccc-ccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhh-hcccccc
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADM-GNLIKLH 162 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~ 162 (959)
+.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|+|+.+ +.+..+++|++|++++ +.+..++..+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence 345567899999999999984 566 689999999999999999 4688999999999999 5788886666 4799999
Q ss_pred eeecCCCCccccccc--ccccccCCceece
Q 002156 163 HHNNSNTDSLEEMPL--GIGKLTCLQTLCN 190 (959)
Q Consensus 163 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~~ 190 (959)
+|++++|+ +..+.. .++.+++|+.|++
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 99999998 766532 2455666666644
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.83 E-value=1.2e-10 Score=118.28 Aligned_cols=261 Identities=19% Similarity=0.256 Sum_probs=116.1
Q ss_pred ccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcc--ccccCCCCcceeeeccCCCcccC-
Q 002156 496 QDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLP--QSSLSLSSLREIVIYKCSSLVSF- 572 (959)
Q Consensus 496 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~- 572 (959)
...|+++.|.+.+|.+++.. ....+...+++|++|++..|....... .....+++|++|+++.|+.+..-
T Consensus 161 ~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 45556666666666555432 222333345666666666655433211 12234666666666666655431
Q ss_pred --CCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCC---CCCccEEEeecCCCccccccc
Q 002156 573 --PEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQL---PRSLKQLDILSCDNIRTLTVE 647 (959)
Q Consensus 573 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~L~~l~~~ 647 (959)
+-......++++...+|...+.-....++..++-+.++++.+|..+++.....+ ...++.++.++|..+...++.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 112234445556555665544332222224555566666666665555432211 133455555555544433321
Q ss_pred ccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCc
Q 002156 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSL 725 (959)
Q Consensus 648 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L 725 (959)
.- ...+++|+.+.+..|..+++. ..- .++.-.+.|+.+++..|.... .+...-.+|+.|
T Consensus 314 aL---------g~~~~~L~~l~l~~c~~fsd~-~ft---------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 314 AL---------GQHCHNLQVLELSGCQQFSDR-GFT---------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HH---------hcCCCceEEEeccccchhhhh-hhh---------hhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 10 112345555555555554431 000 011111355555555554322 223333455555
Q ss_pred cEEeecccCCCccc-----CccccCCCCcceeeccccccccc-cCCCCCCCCCccEEEecCCc
Q 002156 726 EIISIGSCGNLKIL-----PSGLHNLCQLQEIEIWNCGNLVS-FPEGGLPCAKLMRLEIYGCE 782 (959)
Q Consensus 726 ~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~ 782 (959)
+++.+++|..+++. ...-..+..|+.+.+++|+.+.. .-+....|++|+.+++-+|+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 55555555544432 22223344455555555544332 11122334444444444443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.2e-10 Score=122.68 Aligned_cols=107 Identities=26% Similarity=0.453 Sum_probs=64.4
Q ss_pred ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc
Q 002156 79 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
.++|..+..+..|..+.|..|.+..+|.++.++..|.+|||+.|++..+|..+..|+ |++|-+++ ++++.+|.+|+.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccc
Confidence 455555555556666666666666666666666666666666666666666655554 56666665 4566666666655
Q ss_pred cccceeecCCCCcccccccccccccCCcee
Q 002156 159 IKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 159 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
..|.+||.+.|. +..+|..++.|.+|+.|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 566666666665 55666656655555555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.2e-10 Score=113.35 Aligned_cols=130 Identities=21% Similarity=0.156 Sum_probs=63.2
Q ss_pred CCCccEEEecCCcCcCc-cccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 770 CAKLMRLEIYGCERLEA-LPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++.|+.|.+++|.+... +-.....+|+|+.|++.+|.....-......+..|++|||++|+.+.... +.....++.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---GYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---ccccccccc
Confidence 34455555555544311 11122344555555555553222222223334555555555554433221 123344555
Q ss_pred ccEEEEcccCCCccccc---------CCCCCceEeeccCCCCccccc--ccCCCCCCcEEecCCCc
Q 002156 849 LRRLEIRGCDDDMVSFP---------LPASLTSLEISFFPNLERLSS--SIVDLQILTELRLYHCR 903 (959)
Q Consensus 849 L~~L~l~~~~~~~~~~~---------~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~ 903 (959)
|+.|+++.|....+.++ ..++|+.|++..| .+...+. .+..+.+|+.|.+..+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 55555555544433332 4567777777774 4555443 56667777777766543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-09 Score=111.87 Aligned_cols=110 Identities=18% Similarity=0.093 Sum_probs=48.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCccc-CccccCCCCcceeeccccccccc-cCCC-----CCCCC
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKIL-PSGLHNLCQLQEIEIWNCGNLVS-FPEG-----GLPCA 771 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~-~~~~-----~~~~~ 771 (959)
|+|+.|++.+|............++.|+.|+|++|+++... -...+.++.|+.|+++.|..... +|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 45555666555432222222334455555555555554422 12234555555555555532221 2221 12345
Q ss_pred CccEEEecCCcCcCcc-ccccCCCCccceeeeccCCCC
Q 002156 772 KLMRLEIYGCERLEAL-PKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 808 (959)
+|++|++..|++.+-- -..+..+++|+.|.+..|++.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555555555542111 122333444455554444443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.1e-09 Score=104.01 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=98.1
Q ss_pred ccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCC
Q 002156 741 SGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTN 820 (959)
Q Consensus 741 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 820 (959)
..+..+..|+++|+++| .++.+-++..-.|+++.|++++|.+... +.+..+++|+.||+|+|.+. .+...-..+.|
T Consensus 278 ~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 34556788999999998 5666777778889999999999987654 34778899999999999776 33322335788
Q ss_pred cceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccccc--ccCCCCCCcEEe
Q 002156 821 LQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS--SIVDLQILTELR 898 (959)
Q Consensus 821 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~ 898 (959)
++.|.+++|. ++...++..+.+|..|++++ ++++.+.+ ++++++-|+++.
T Consensus 354 IKtL~La~N~------iE~LSGL~KLYSLvnLDl~~----------------------N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 354 IKTLKLAQNK------IETLSGLRKLYSLVNLDLSS----------------------NQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred Eeeeehhhhh------HhhhhhhHhhhhheeccccc----------------------cchhhHHHhcccccccHHHHHh
Confidence 8999999885 22224455566666666666 56776654 889999999999
Q ss_pred cCCCcC
Q 002156 899 LYHCRK 904 (959)
Q Consensus 899 l~~c~~ 904 (959)
+.+||.
T Consensus 406 L~~NPl 411 (490)
T KOG1259|consen 406 LTGNPL 411 (490)
T ss_pred hcCCCc
Confidence 999875
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=5.4e-10 Score=117.87 Aligned_cols=106 Identities=27% Similarity=0.268 Sum_probs=93.6
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
..+.--...||+.|++..+|..++.+..|+.|.|+.|.|..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|-
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEE
Confidence 46666778899999999999999999999999999999999999999999999999999 68999999888775 88999
Q ss_pred cCCCCcccccccccccccCCceeceEEec
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 194 (959)
+++|+ ++.+|.+|+-+..|.+|+...+.
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhh
Confidence 99998 99999999988888888655444
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.68 E-value=8.9e-08 Score=100.89 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=95.7
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCc
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTS 796 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 796 (959)
..+..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|..+. ++|+.|++++|..+..+|. +
T Consensus 46 ~r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence 34566788999999988 5555662 245699999998888888876442 5888888888865655553 5
Q ss_pred cceeeeccCCCC--CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 797 LQELRIGRGVEL--PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 797 L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
|+.|+++++... +.+| ++|+.|.+.++..... ......+|++|+.|+
T Consensus 114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~-------------------------~~lp~~LPsSLk~L~ 162 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQ-------------------------ARIDNLISPSLKTLS 162 (426)
T ss_pred cceEEeCCCCCcccccCc------chHhheeccccccccc-------------------------cccccccCCcccEEE
Confidence 667777654432 2233 4566666644321000 000012455666666
Q ss_pred eccCCCCcccccccCCCCCCcEEecCCCcC-CCCCCCCCCccccceeeccCChhHHH
Q 002156 875 ISFFPNLERLSSSIVDLQILTELRLYHCRK-LKYFPKKGLPSSLLRLWIEGCPLIEE 930 (959)
Q Consensus 875 l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~L~~L~l~~c~~l~~ 930 (959)
+++|..+ .+|..+. .+|+.|+++.+.. ...++...+|+++ .|++.+|-++..
T Consensus 163 Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 163 LTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 6665533 2333332 4666666655321 1233444456666 666666654433
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.6e-08 Score=112.46 Aligned_cols=125 Identities=25% Similarity=0.333 Sum_probs=106.9
Q ss_pred cccCCcccEEeccccCCCCCCcccccccccCCCCC-ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhc
Q 002156 55 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNK 133 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~ 133 (959)
..+.+.++.|.+.++. ...+++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3445678888777665 577777778885 99999999999999998999999999999999999999988889
Q ss_pred cccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 134 LYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+.+|+.|++++ +.+..+|..++.+..|++|.+++|. +..++..+++++++..|
T Consensus 185 ~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 99999999999 6899999888888999999999997 56666667777666655
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.2e-08 Score=99.00 Aligned_cols=103 Identities=28% Similarity=0.373 Sum_probs=49.2
Q ss_pred cCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
+..-++.+|+|++|+|.|..+- .+..|++|+.||||+|.+.++-..-.+|-|.++|.|+. +.++.+ +++++|.+|..
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L-SGL~KLYSLvn 378 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETL-SGLRKLYSLVN 378 (490)
T ss_pred hhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhh-hhhHhhhhhee
Confidence 3344444444444444444442 24444444444444444444433333444444444444 234433 24555666666
Q ss_pred eecCCCCcccccc--cccccccCCceece
Q 002156 164 HNNSNTDSLEEMP--LGIGKLTCLQTLCN 190 (959)
Q Consensus 164 L~l~~~~~~~~~p--~~i~~L~~L~~L~~ 190 (959)
||+++|+ +..+- .+||+|+.|+++.+
T Consensus 379 LDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 379 LDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred ccccccc-hhhHHHhcccccccHHHHHhh
Confidence 6666665 55443 33666666665543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=5.2e-08 Score=113.19 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=75.5
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
++.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666777777777777777777766666776677777777777777777777777777777777777777
Q ss_pred CCCCCCCcccCCC-CCCcceEEccCCch
Q 002156 805 GVELPSLEEEDGL-PTNLQSLDIWGNIE 831 (959)
Q Consensus 805 n~~~~~~~~~~~~-~~~L~~L~l~~n~~ 831 (959)
|.+.+.+|..++. ..++..+++.+|+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 7777777766554 24566777777754
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=7.1e-08 Score=74.06 Aligned_cols=57 Identities=30% Similarity=0.510 Sum_probs=44.3
Q ss_pred CceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCc
Q 002156 89 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDC 145 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~ 145 (959)
++|++|++++|+++.+| .+|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46788888888888875 47788888888888888888774 46788888888888875
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.1e-07 Score=110.38 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=102.0
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCcCcCccccccCCC-CccceeeeccCCCCCCCc
Q 002156 780 GCERLEALPKGLHNL-TSLQELRIGRGVELPSLE 812 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~ 812 (959)
+|.+.+.+|..++.. .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999888653 577889999997664444
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=2.1e-06 Score=90.80 Aligned_cols=115 Identities=23% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
..++.|++++| .+..+| .--.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|. +|+.|++
T Consensus 52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 58999999999 455556 223479999999999998888766 47999999999987777774 6888888
Q ss_pred cCCcC--cCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 779 YGCER--LEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 779 ~~~~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
.++.. ++.+|. +|+.|.+.++......+.....+++|++|++++|..
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 76543 344443 677888854332111110112347888888888864
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=4.3e-07 Score=69.69 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=25.6
Q ss_pred CcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCC
Q 002156 748 QLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGV 806 (959)
Q Consensus 748 ~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 806 (959)
+|++|++++|. ++.+| ..+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444442 22222 233444444444444444443334444444444444444443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=8.1e-08 Score=106.75 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=96.3
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhc
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGN 157 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 157 (959)
...+...+..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++ +.+..++ .+..
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLES 160 (414)
T ss_pred hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCcc
Confidence 34445567899999999999999999866688999999999999999988 5678888899999999 4666664 5777
Q ss_pred ccccceeecCCCCcccccccc-cccccCCceeceEEeccCCCCChhhhhhh
Q 002156 158 LIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLSELKLL 207 (959)
Q Consensus 158 L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L 207 (959)
++.|+.+++++|. +..+... ...+.+++.+.+..+.......+..+..+
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l 210 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKL 210 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHH
Confidence 9999999999998 7777654 47777777776655544444444444433
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=1.7e-07 Score=93.66 Aligned_cols=189 Identities=17% Similarity=0.141 Sum_probs=123.2
Q ss_pred HHhhcCCCCccEEeecccCCCcccC----ccccCCCCcceeecccccccccc-------------CCCCCCCCCccEEEe
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILP----SGLHNLCQLQEIEIWNCGNLVSF-------------PEGGLPCAKLMRLEI 778 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p----~~~~~l~~L~~L~l~~~~~l~~~-------------~~~~~~~~~L~~L~l 778 (959)
.+++..+++|++|+||+|-+--.-+ .-+.++..|++|++.+|..-..- .....+-++|+++..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3445556666666666664432221 22345666777777666321100 011233578999999
Q ss_pred cCCcCcCcc----ccccCCCCccceeeeccCCCCCC----CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 779 YGCERLEAL----PKGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 779 ~~~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
..|++-... ...+...+.|+.+.++.|.+... +...+..+++|++|||.+|-............+..|+.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 999854322 23456778999999999977532 2345678999999999999877666655566788899999
Q ss_pred EEEEcccCCCcccc--------cCCCCCceEeeccCCCCcc----cccccCCCCCCcEEecCCCcC
Q 002156 851 RLEIRGCDDDMVSF--------PLPASLTSLEISFFPNLER----LSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 851 ~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~c~~ 904 (959)
.|++++|......- ...++|+.|.+.+|..-.. +-..+...+.|+.|+|++|..
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999984332211 1467899999999643322 233566688999999999754
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.6e-08 Score=96.75 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=106.2
Q ss_pred CCceEeeccChhhH-HHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC--CCCCCCCccEE
Q 002156 700 SLKSLGVFECSKLE-SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRL 776 (959)
Q Consensus 700 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 776 (959)
.++.||+++-.+.. .+...+..|++|+.|.+.+++..+.+-..+..-.+|+.|+|+.|...++... -+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888888766654 4566678888899998888888777777778888888888888877664322 23466777777
Q ss_pred EecCCcCcCcccc-cc-CCCCccceeeeccCCCC---CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 777 EIYGCERLEALPK-GL-HNLTSLQELRIGRGVEL---PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 777 ~l~~~~~~~~~~~-~~-~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+++.|......-. .+ +--+.|+.|+++|+.-. ..+..-...+++|..||||+|..++.... ..+..++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH---HHHHhcchhee
Confidence 7777765433211 11 11245666666665321 11121223566666666666655443222 22334444444
Q ss_pred EEEcccCCCcccccCCCCCceEeeccCCCCccccc---ccCCCCCCcEEecCCCc
Q 002156 852 LEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS---SIVDLQILTELRLYHCR 903 (959)
Q Consensus 852 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c~ 903 (959)
|.+ ++|-. .+|. .+...++|.+|++.+|-
T Consensus 343 lSl---------------------sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSL---------------------SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeh---------------------hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 444 44422 1222 55667788888887763
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.3e-08 Score=97.17 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCc--ccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE--EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
.|.+|+.|.+.++++.+.+...++.-.+|+.|+++.|....... -.+..++.|.+|+++.|......... ..-.--
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~his 285 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHIS 285 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhc
Confidence 34455555555555444444444444455555555544332211 12334555555555555432222110 000112
Q ss_pred CCccEEEEcccCCCcccc------cCCCCCceEeeccCCCCcc-cccccCCCCCCcEEecCCCcCCCCCCCC----CCcc
Q 002156 847 SSLRRLEIRGCDDDMVSF------PLPASLTSLEISFFPNLER-LSSSIVDLQILTELRLYHCRKLKYFPKK----GLPS 915 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~~ 915 (959)
.+|+.|+++||..+...- .-.+.|.+||++.|..++. .-..+..|+.|++|.++.|-.+ +|+. .-.|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 355566666654332221 1467788888888888875 2237889999999999999654 2221 1258
Q ss_pred ccceeeccCCh
Q 002156 916 SLLRLWIEGCP 926 (959)
Q Consensus 916 ~L~~L~l~~c~ 926 (959)
+|..|++.||-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 99999999983
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=2.7e-07 Score=92.29 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=157.2
Q ss_pred CCCceEeeccChhhH----HHHHhhcCCCCccEEeecccCCCc----ccC-------ccccCCCCcceeecccccccccc
Q 002156 699 PSLKSLGVFECSKLE----SIAERLDNNTSLEIISIGSCGNLK----ILP-------SGLHNLCQLQEIEIWNCGNLVSF 763 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~p-------~~~~~l~~L~~L~l~~~~~l~~~ 763 (959)
.+++++++++|.+-. .+...+.+-++|+..++++- +.| .+| ..+..++.|++|+||+|..-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 588999999998755 46677888899999999873 222 223 34566889999999999765444
Q ss_pred CC----CCCCCCCccEEEecCCcCcCccc-------------cccCCCCccceeeeccCCCCCC----CcccCCCCCCcc
Q 002156 764 PE----GGLPCAKLMRLEIYGCERLEALP-------------KGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQ 822 (959)
Q Consensus 764 ~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~ 822 (959)
++ -+.++..|++|.+.+|.+...-- .-.+.-+.|+++..+.|.+... +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 43 23568999999999997542211 1123457999999999987632 233466779999
Q ss_pred eEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccc-------ccCCCCCceEeeccCCCCcc----cccc-cCC
Q 002156 823 SLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS-------FPLPASLTSLEISFFPNLER----LSSS-IVD 890 (959)
Q Consensus 823 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~----l~~~-~~~ 890 (959)
.+.++.|.............+..+++|+.|++.++...... .+..+.|++|++++|..-.. +-.. -..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 99999998666555444467888999999999986433332 22456899999999853321 2212 234
Q ss_pred CCCCcEEecCCCcCCCC------CCCCCCccccceeeccCChh
Q 002156 891 LQILTELRLYHCRKLKY------FPKKGLPSSLLRLWIEGCPL 927 (959)
Q Consensus 891 l~~L~~L~l~~c~~l~~------l~~~~~~~~L~~L~l~~c~~ 927 (959)
.++|++|.+.+|..-.. .+-.. .+.|.+|++.+|..
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 78999999999753211 01011 47799999998864
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.3e-06 Score=60.84 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccc
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP 128 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp 128 (959)
++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777666777777777777777776653
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=4.3e-07 Score=100.98 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=86.9
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
..+..+..+.+..|.|..+-..++.+++|.+|++.+|+|..+...+..+.+|++|++++ +.+..+. .+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhe
Confidence 35677777889999998865679999999999999999999965589999999999999 5677764 688888999999
Q ss_pred cCCCCcccccccccccccCCceeceEEecc
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 195 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 195 (959)
+++|. +..+ .++..++.|+.+++..+..
T Consensus 147 l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 147 LSGNL-ISDI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eccCc-chhc-cCCccchhhhcccCCcchh
Confidence 99998 7776 3566678888776655543
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=6.3e-06 Score=57.44 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=26.9
Q ss_pred CcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh
Q 002156 112 RYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL 151 (959)
Q Consensus 112 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (959)
++|++|++++|+|+++|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4677888888888877777778888888888774 44444
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=1.9e-06 Score=74.12 Aligned_cols=90 Identities=22% Similarity=0.243 Sum_probs=52.0
Q ss_pred CCCCceeEEEecCCCCcccccccc-ccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
.+..+|...+|++|.+.++|..|. +.+..++|+|++|.|.++|.++..++.|+.|+++. +.+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 455556666666666666655443 33356666666666666666666666666666665 3455555555556666666
Q ss_pred ecCCCCccccccc
Q 002156 165 NNSNTDSLEEMPL 177 (959)
Q Consensus 165 ~l~~~~~~~~~p~ 177 (959)
+..+|. ...+|.
T Consensus 129 ds~~na-~~eid~ 140 (177)
T KOG4579|consen 129 DSPENA-RAEIDV 140 (177)
T ss_pred cCCCCc-cccCcH
Confidence 665555 444443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=9.7e-07 Score=96.40 Aligned_cols=118 Identities=25% Similarity=0.170 Sum_probs=93.2
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHh-hhcccccceeecC
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNS 167 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~ 167 (959)
-.|.+.++++|.+..+..++.-++.|+.|+|++|+++++ +.+..|++|++|||++ |.+..+|.- ...++ |+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhccccccccccc-chhccccccchhhhh-heeeeec
Confidence 457888899999988888899999999999999999988 5889999999999999 578888753 33444 9999999
Q ss_pred CCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcc
Q 002156 168 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLR 211 (959)
Q Consensus 168 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 211 (959)
+|. ++.+ .+|.+|++|+.|++..+-......+.-|..|..|+
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 998 7777 68999999999988766555444444444444444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=7e-06 Score=70.68 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCceeEEEecCCCCcccccc---ccccCcccEEeccCCCCcccchhhh-ccccccEEeccCcchhhhhhHhhhcccccc
Q 002156 87 KLQRLRAFSLRGYHIFELPDS---IGDLRYLRYLNLSGTHIRALPESVN-KLYNLHTLLLEDCRELKKLCADMGNLIKLH 162 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~---~~~l~~L~~L~L~~n~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 162 (959)
.-+.+..+||+.|.+..+++. +.+.++|...+|++|.+.+.|..|. ..+-..+|++++ +.+..+|.++..++.|+
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 344566778888877766543 4566777777888888888887774 445788888887 57888888888888888
Q ss_pred eeecCCCCcccccccccccccCCceeceE
Q 002156 163 HHNNSNTDSLEEMPLGIGKLTCLQTLCNF 191 (959)
Q Consensus 163 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 191 (959)
.|+++.|. +...|.-|..|.+|-.|+..
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 88888887 77777777777777777543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=3.4e-05 Score=75.59 Aligned_cols=187 Identities=13% Similarity=0.033 Sum_probs=104.0
Q ss_pred CCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCc-cccccCCCCcc
Q 002156 721 NNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEA-LPKGLHNLTSL 797 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L 797 (959)
.++.++.+++.+|.+.. .+...+..+|.|++|+|+.|+....|...-....+|++|-+.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666666666665433 3334455666677777766654433322223445666666666543211 12234566677
Q ss_pred ceeeeccCCCCCCCc--ccC-CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc----cccCCCCC
Q 002156 798 QELRIGRGVELPSLE--EED-GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV----SFPLPASL 870 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~--~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~L 870 (959)
+.|+++.|......- ... .-.+.+.+|..-+|......... ..-..++++..+.+..|-.... .+...+++
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 777777663221100 001 12346666666677544332221 1223467888888877633322 22355666
Q ss_pred ceEeeccCCCCccccc--ccCCCCCCcEEecCCCcCCCCCCC
Q 002156 871 TSLEISFFPNLERLSS--SIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 871 ~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
-.|+++. +++.+..+ .+..|++|.-|.+.++|....+..
T Consensus 227 ~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 227 SCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 6777777 46666554 677888888899988887766644
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00011 Score=68.33 Aligned_cols=105 Identities=24% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh-hccccccEEeccCcchhhhhhH--hhhcccccce
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHH 163 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 163 (959)
-+.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-..+ .-+++|.+|.|.+ +.+..+-+ .+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence 3446778899999998884 5889999999999999999995555 5677899999998 46666543 2678889999
Q ss_pred eecCCCCccccccc----ccccccCCceeceEEec
Q 002156 164 HNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 164 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
|.+-+|. ++.-+. -+.++++|++|+...+.
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998 666552 27888899988765443
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=1.2e-05 Score=88.14 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=70.4
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
.++.=++.||.|.+..|.. .....+..+++|+.|||++|.++.+|. +...++ |+.|.|++|.++++ ..|
T Consensus 181 ~SLqll~ale~LnLshNk~--------~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gi 250 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKF--------TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGI 250 (1096)
T ss_pred HHHHHHHHhhhhccchhhh--------hhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhH
Confidence 3444556777777666541 222345777777777777777777765 223333 77777777777777 567
Q ss_pred hccccccEEeccCcchhhhhhH--hhhcccccceeecCCCCcccccc
Q 002156 132 NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTDSLEEMP 176 (959)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p 176 (959)
.+|.+|+.||+++| .+...-+ -+..|..|+.|+|-||. +.--|
T Consensus 251 e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 77777777777773 4433321 25667777777777776 44433
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00013 Score=71.59 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=48.8
Q ss_pred ccccceEEEecCCCCC--CccccccCCCCcceeeeccCCCcccCCCC-cCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 531 SCRLEYLTLSGCQGLV--KLPQSSLSLSSLREIVIYKCSSLVSFPEV-ALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.+.++.+++.+|.+.. .+...+.++|.|+.|+++.|+....|... ....+|++|-+.+....-.-...+. ..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcchhh
Confidence 3677788888887755 33445667888888888888655444333 2345666666665543221111111 455666
Q ss_pred cEEEEec
Q 002156 608 EILTISS 614 (959)
Q Consensus 608 ~~L~l~~ 614 (959)
++|+++.
T Consensus 149 telHmS~ 155 (418)
T KOG2982|consen 149 TELHMSD 155 (418)
T ss_pred hhhhhcc
Confidence 6666665
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=1.1e-05 Score=92.90 Aligned_cols=193 Identities=23% Similarity=0.303 Sum_probs=91.2
Q ss_pred cCCCCccEEeecccCCCccc--CccccCCCCcceeeccccccccc--cCCCCCCCCCccEEEecCCcCcCc--cccccCC
Q 002156 720 DNNTSLEIISIGSCGNLKIL--PSGLHNLCQLQEIEIWNCGNLVS--FPEGGLPCAKLMRLEIYGCERLEA--LPKGLHN 793 (959)
Q Consensus 720 ~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 793 (959)
..+.+|+.|+++.+..+++. ......+++|++|.+.+|..++. +-.....+++|++|++++|..... +.....+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 34455566666555533221 11112255666666555543211 222233455566666666554321 1111223
Q ss_pred CCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhh-hhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCce
Q 002156 794 LTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIW-KSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 794 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
+++|+.|.+..... +..++.+.+.++.... +... ......+++++.+.+.+|. ....+ ..
T Consensus 320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~--~~~~~~~~~l~~~~l~~~~-~~~~~------~~ 380 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLA--ELILRSCPKLTDLSLSYCG-ISDLG------LE 380 (482)
T ss_pred CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHh--HHHHhcCCCcchhhhhhhh-ccCcc------hH
Confidence 44444443332211 3344444444333221 0111 1234455666666666543 21111 14
Q ss_pred EeeccCCCC-cccccccCCCCCCcEEecCCCcCCCCCCCCCC---ccccceeeccCChhHHHH
Q 002156 873 LEISFFPNL-ERLSSSIVDLQILTELRLYHCRKLKYFPKKGL---PSSLLRLWIEGCPLIEEK 931 (959)
Q Consensus 873 L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~~l~~~ 931 (959)
+.+.+|+.+ ..+........+++.|+++.|...+.-..... ...++.+++.+|+.+...
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 566777777 44443444444588888888876554332211 445777888888776554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.00014 Score=84.51 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=36.2
Q ss_pred CCCCceeEEEecCCCCcc--ccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh--hHhhhccccc
Q 002156 86 FKLQRLRAFSLRGYHIFE--LPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL--CADMGNLIKL 161 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L 161 (959)
..+++||.|.+++-.+.. +-....++++|+.||+|+++|+.+ ..+++|++|++|.+.+ -.+..- -.++.+|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCC
Confidence 445555555554433321 112233444555555555555544 4455555555555443 222211 1224445555
Q ss_pred ceeecCCC
Q 002156 162 HHHNNSNT 169 (959)
Q Consensus 162 ~~L~l~~~ 169 (959)
++||+|..
T Consensus 223 ~vLDIS~~ 230 (699)
T KOG3665|consen 223 RVLDISRD 230 (699)
T ss_pred Ceeecccc
Confidence 55555443
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=0.00011 Score=71.14 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=61.8
Q ss_pred ccccCCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCc----ccc-------hhhhccccccEEeccC
Q 002156 81 ILPKLFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIR----ALP-------ESVNKLYNLHTLLLED 144 (959)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~----~lp-------~~i~~L~~L~~L~L~~ 144 (959)
....+..+..+..+|||||.|.. +-..+.+-.+|++-+++.-... ++| ..+-++++|+..+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 34444568888999999998853 3445667788888888864221 333 3445677888888887
Q ss_pred cchhhhhhHh----hhcccccceeecCCCCcccccc
Q 002156 145 CRELKKLCAD----MGNLIKLHHHNNSNTDSLEEMP 176 (959)
Q Consensus 145 ~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~p 176 (959)
|..-...|+. |.+-+.|.||.+++|. ++.+.
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 6544444433 4555778888887777 55443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.00032 Score=81.54 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=82.6
Q ss_pred CcccEEeccCCCCc--ccchhhh-ccccccEEeccCcchhh--hhhHhhhcccccceeecCCCCcccccccccccccCCc
Q 002156 112 RYLRYLNLSGTHIR--ALPESVN-KLYNLHTLLLEDCRELK--KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQ 186 (959)
Q Consensus 112 ~~L~~L~L~~n~i~--~lp~~i~-~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 186 (959)
.+||+|+++|...- .-|..++ -|+.|+.|.+++ ..+. +.-.-..++++|+.||+++++ ++.+ .+|++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 67888888886432 2255563 688899998887 3332 223335678889999999888 7777 7788888888
Q ss_pred eeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhcc
Q 002156 187 TLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLD 266 (959)
Q Consensus 187 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 266 (959)
.|............+.+ +.++++|+.||++.......+ ..-...++
T Consensus 199 ~L~mrnLe~e~~~~l~~-----------------------------LF~L~~L~vLDIS~~~~~~~~-----~ii~qYle 244 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLID-----------------------------LFNLKKLRVLDISRDKNNDDT-----KIIEQYLE 244 (699)
T ss_pred HHhccCCCCCchhhHHH-----------------------------HhcccCCCeeeccccccccch-----HHHHHHHH
Confidence 88544333332222222 445666666777654432211 11222334
Q ss_pred CCCCCCCcceEEEeccCC
Q 002156 267 MLKPHTNLEQFCIKGYEG 284 (959)
Q Consensus 267 ~l~~~~~L~~L~l~~~~~ 284 (959)
.-..+|+|+.|+.+|...
T Consensus 245 c~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCccccEEecCCcch
Confidence 444567777777776543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.98 E-value=0.00013 Score=84.18 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=11.7
Q ss_pred ccCCCccEEEEccCCCccc
Q 002156 496 QDISSLKRLTIASCPKLQS 514 (959)
Q Consensus 496 ~~l~~L~~L~l~~c~~l~~ 514 (959)
...+.|+.+.+.+|..+..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~ 203 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD 203 (482)
T ss_pred hhCchhhHhhhcccccCCh
Confidence 3456666666666666554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0023 Score=59.79 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=17.5
Q ss_pred cCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 791 LHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 791 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
|..+++|.+|.+.+|.++.+-|.-...+++|..|.+.+|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 334444555555555444333322233444445554444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00098 Score=65.09 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCC--CCc-ccchhhhccccccEEeccCcchhhhhh--Hhhhcccc
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT--HIR-ALPESVNKLYNLHTLLLEDCRELKKLC--ADMGNLIK 160 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~ 160 (959)
..+..|..|++.+..++.+ ..+..|++|++|.++.| ++. .++.-...+++|++|++++| .++.+- ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 4445555555555555554 34555666666666666 333 33333344466666666663 333211 12445555
Q ss_pred cceeecCCCCccccccc----ccccccCCceeceE
Q 002156 161 LHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNF 191 (959)
Q Consensus 161 L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~ 191 (959)
|..|++..|. ...+-. -+.-+++|..|+..
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccc
Confidence 6666666665 333221 13445555555443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00027 Score=68.82 Aligned_cols=59 Identities=29% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccc--hhhhccccccEEeccCc
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP--ESVNKLYNLHTLLLEDC 145 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~ 145 (959)
.+|+.|.+|.||-|.|+.+ ..+..+++|+.|+|..|.|..+- .-+.+|++|++|-|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 4556666666666665555 33555566666666666555442 12234444455444443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.0014 Score=37.70 Aligned_cols=18 Identities=44% Similarity=0.916 Sum_probs=8.5
Q ss_pred ccEEeccCCCCcccchhh
Q 002156 114 LRYLNLSGTHIRALPESV 131 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i 131 (959)
||+|||++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.25 E-value=0.0041 Score=60.64 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHhhcCCCCccEEeecccCCCcccCc----cccCCCCcceeeccccccccccCC--------------CCCCCCCccE
Q 002156 714 SIAERLDNNTSLEIISIGSCGNLKILPS----GLHNLCQLQEIEIWNCGNLVSFPE--------------GGLPCAKLMR 775 (959)
Q Consensus 714 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~l~~~~~--------------~~~~~~~L~~ 775 (959)
.+-+++..|+.|+..++|+|-+....|. .+.+-+.|++|.+++|. ++-+.. -..+-|.|++
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 3445677889999999988877554443 34567889999998873 332211 1234678999
Q ss_pred EEecCCcCcCccc----cccCCCCccceeeeccCCCCCC-----CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 776 LEIYGCERLEALP----KGLHNLTSLQELRIGRGVELPS-----LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 776 L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
.....|++-.-.. ..+..-..|+.+.+.+|.+... +...+..+.+|+.||+.+|-.........+..+..|
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 9999888642221 1222225789999999877633 112345688999999999976655544444567788
Q ss_pred CCccEEEEcccC
Q 002156 847 SSLRRLEIRGCD 858 (959)
Q Consensus 847 ~~L~~L~l~~~~ 858 (959)
+.|+.|.+.+|-
T Consensus 242 ~~lrEL~lnDCl 253 (388)
T COG5238 242 NLLRELRLNDCL 253 (388)
T ss_pred chhhhccccchh
Confidence 899999999873
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00039 Score=67.78 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHh--hhcccccce
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCAD--MGNLIKLHH 163 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~ 163 (959)
..+.+.+.|++-||.+++| +...+|+.|++|.|+-|+|+.+ +.+..+++|+.|.|.. +.+..+-+- +.+|++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence 3566778888999999888 5677999999999999999999 6789999999999998 467666433 688899999
Q ss_pred eecCCCCcccccccc-----cccccCCceeceEEe
Q 002156 164 HNNSNTDSLEEMPLG-----IGKLTCLQTLCNFVV 193 (959)
Q Consensus 164 L~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 193 (959)
|-|..|.--+.-+.. +.-|++|+.|+...+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 999877644444422 677899999976443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0031 Score=61.67 Aligned_cols=96 Identities=27% Similarity=0.291 Sum_probs=68.1
Q ss_pred cccCCCCCceeEEEecCC--CCc-cccccccccCcccEEeccCCCCccc--chhhhccccccEEeccCcchhhh-hhH--
Q 002156 82 LPKLFKLQRLRAFSLRGY--HIF-ELPDSIGDLRYLRYLNLSGTHIRAL--PESVNKLYNLHTLLLEDCRELKK-LCA-- 153 (959)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~--~i~-~lp~~~~~l~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~~~~~~-lp~-- 153 (959)
...|..|++|+.|+++.| ++. .++-...++++|++|+|++|+|+.+ -.....+.+|..||+.+|..... -+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 345678889999999999 443 3444455669999999999988754 13457888899999998754331 122
Q ss_pred hhhcccccceeecCCCCcccccccc
Q 002156 154 DMGNLIKLHHHNNSNTDSLEEMPLG 178 (959)
Q Consensus 154 ~i~~L~~L~~L~l~~~~~~~~~p~~ 178 (959)
.|.-+++|.+||-.... -.+.|..
T Consensus 138 vf~ll~~L~~LD~~dv~-~~Ea~~~ 161 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD-GEEAPEA 161 (260)
T ss_pred HHHHhhhhccccccccC-Ccccccc
Confidence 26778899999987776 5555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0039 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.7
Q ss_pred ceeEEEecCCCCcccccccccc
Q 002156 90 RLRAFSLRGYHIFELPDSIGDL 111 (959)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~l 111 (959)
+|++||+++|.++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999998888764
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.29 E-value=0.001 Score=63.13 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
+..++..++||++.|++..+-..|+.++.|..|+++.|+|..+|.+++.+..++.+++.. +.....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 456777888888888877776678888888888888888888888888888888888876 5677788888888888888
Q ss_pred ecCCCC
Q 002156 165 NNSNTD 170 (959)
Q Consensus 165 ~l~~~~ 170 (959)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 877765
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.07 E-value=0.066 Score=48.46 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=41.0
Q ss_pred hcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
|.++++|+.+.+.. .....-...+..+++|+.+++..+ +..++. .+..+++++.+.+.+ .........|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 55555666666543 222222344555666666666543 333332 344555666666654 2222223344556666
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccC
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWG 828 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 828 (959)
+.+++..+ +...-...+..+ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666543 221222234444 555555543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.75 E-value=0.018 Score=30.66 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=6.0
Q ss_pred cccEEeccCCCCcccc
Q 002156 113 YLRYLNLSGTHIRALP 128 (959)
Q Consensus 113 ~L~~L~L~~n~i~~lp 128 (959)
+||.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.17 E-value=0.11 Score=47.07 Aligned_cols=99 Identities=24% Similarity=0.173 Sum_probs=47.9
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
..|.++++|+.+++.++ ....-...+..+++|+.+.+.. ....++. .+..+++|+.+++..+ +...-...+.+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 35777878888888663 3333345577777888888865 3333443 4556888888888764 333334566776
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNL 821 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L 821 (959)
.|+.+.+.. .....-...+..+++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 888888775 2332333344455444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.11 E-value=0.0048 Score=58.78 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=77.3
Q ss_pred cccc-ccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccc
Q 002156 102 FELP-DSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIG 180 (959)
Q Consensus 102 ~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 180 (959)
+.+| ..+.....-++||++.|++..+-..+..++.|..||++. +.+..+|.+++.+..++++++..|. .+..|..++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 4454 356777889999999999998888899999999999998 6899999999999999999999888 999999999
Q ss_pred cccCCceece
Q 002156 181 KLTCLQTLCN 190 (959)
Q Consensus 181 ~L~~L~~L~~ 190 (959)
++++++.++.
T Consensus 109 k~~~~k~~e~ 118 (326)
T KOG0473|consen 109 KEPHPKKNEQ 118 (326)
T ss_pred ccCCcchhhh
Confidence 9999998854
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.014 Score=54.71 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=48.1
Q ss_pred cceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc-----cccCCCCCceEeeccCCCCccccc-ccCCCCCC
Q 002156 821 LQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV-----SFPLPASLTSLEISFFPNLERLSS-SIVDLQIL 894 (959)
Q Consensus 821 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L 894 (959)
++.+|-++........ ..+..+++++.|.+.+|..... .+...++|+.|++++|+.|++-.- .+..+++|
T Consensus 103 IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHHHHH----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4444444444333333 2344455555555555433221 122667888888888888887433 67888888
Q ss_pred cEEecCCCcCCC
Q 002156 895 TELRLYHCRKLK 906 (959)
Q Consensus 895 ~~L~l~~c~~l~ 906 (959)
+.|.+.+-+.+.
T Consensus 179 r~L~l~~l~~v~ 190 (221)
T KOG3864|consen 179 RRLHLYDLPYVA 190 (221)
T ss_pred HHHHhcCchhhh
Confidence 888888754443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.65 E-value=0.047 Score=29.01 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=11.4
Q ss_pred CceeEEEecCCCCcccc
Q 002156 89 QRLRAFSLRGYHIFELP 105 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp 105 (959)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.08 E-value=0.13 Score=31.08 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=14.8
Q ss_pred cCcccEEeccCCCCcccchhh
Q 002156 111 LRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~~i 131 (959)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.08 E-value=0.13 Score=31.08 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=14.8
Q ss_pred cCcccEEeccCCCCcccchhh
Q 002156 111 LRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~~i 131 (959)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.03 Score=52.69 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=51.1
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCc
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSL 849 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 849 (959)
.++.++-+++.+...--..+.++++++.|.+.+|.-... +...-+..++|+.|++++|+.+++... ..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhhh
Confidence 566666666665544445556677777777777654422 111112457888888888887776554 345667777
Q ss_pred cEEEEcc
Q 002156 850 RRLEIRG 856 (959)
Q Consensus 850 ~~L~l~~ 856 (959)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777765
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.64 E-value=0.63 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCceeEEEecCCCCcccccc
Q 002156 88 LQRLRAFSLRGYHIFELPDS 107 (959)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~ 107 (959)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999999764
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.64 E-value=0.63 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCceeEEEecCCCCcccccc
Q 002156 88 LQRLRAFSLRGYHIFELPDS 107 (959)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~ 107 (959)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999999764
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.50 E-value=1.8 Score=26.02 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=12.1
Q ss_pred cCcccEEeccCCCCccc
Q 002156 111 LRYLRYLNLSGTHIRAL 127 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~l 127 (959)
+++|+.|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777788888877654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.04 E-value=1.9 Score=25.89 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=6.5
Q ss_pred CCCcEEecCCCcCC
Q 002156 892 QILTELRLYHCRKL 905 (959)
Q Consensus 892 ~~L~~L~l~~c~~l 905 (959)
++|++|+|++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34444444444444
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.16 E-value=2.1 Score=25.65 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=12.7
Q ss_pred cccEEeccCCCCcccch
Q 002156 113 YLRYLNLSGTHIRALPE 129 (959)
Q Consensus 113 ~L~~L~L~~n~i~~lp~ 129 (959)
+|++|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777775
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=72.00 E-value=0.054 Score=60.48 Aligned_cols=131 Identities=22% Similarity=0.209 Sum_probs=71.2
Q ss_pred CceEeeccChhhH----HHHHhhcCCCCccEEeecccCCCccc----CccccCC-CCcceeeccccccccc----cCCCC
Q 002156 701 LKSLGVFECSKLE----SIAERLDNNTSLEIISIGSCGNLKIL----PSGLHNL-CQLQEIEIWNCGNLVS----FPEGG 767 (959)
Q Consensus 701 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~----p~~~~~l-~~L~~L~l~~~~~l~~----~~~~~ 767 (959)
+..|.+.+|.... .+...+.....|+.|++++|.+...- -..+... ..|++|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888877654 34556677788888888887765321 1222222 5666777777744332 22233
Q ss_pred CCCCCccEEEecCCcCcCc----cccccC----CCCccceeeeccCCCCCC----CcccCCCCCC-cceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEA----LPKGLH----NLTSLQELRIGRGVELPS----LEEEDGLPTN-LQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~~ 831 (959)
.....++.++++.|.+... ++..+. ...+++.|++++|.++.. +...+...+. +.+++++.|..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 3356677777777765311 122222 355666666666655411 1112233333 55566666653
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.25 E-value=0.069 Score=59.64 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCCceEeeccChhhHH----HHHhhcCC-CCccEEeecccCCCcc----cCccccCCCCcceeeccccccccc----cCC
Q 002156 699 PSLKSLGVFECSKLES----IAERLDNN-TSLEIISIGSCGNLKI----LPSGLHNLCQLQEIEIWNCGNLVS----FPE 765 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~l~~----~~~ 765 (959)
+.|+.|++++|.+... +...+... ..+++|++..|..... +...+.....+++++++.|..... ++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 5888999998887643 22333333 5677788888877653 355566688889999998866421 222
Q ss_pred C----CCCCCCccEEEecCCcCcCcc----ccccCCCCc-cceeeeccCCCCCC----CcccCCCC-CCcceEEccCCch
Q 002156 766 G----GLPCAKLMRLEIYGCERLEAL----PKGLHNLTS-LQELRIGRGVELPS----LEEEDGLP-TNLQSLDIWGNIE 831 (959)
Q Consensus 766 ~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~ 831 (959)
. +....++++|++.+|..+... ...+...++ +..|++..|.+... ....+..+ ..+++++++.|..
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 2 224568999999999866322 223345555 77789988877633 12234444 6778888888876
Q ss_pred hhhhhhhhccCCCCCCCccEEEEccc
Q 002156 832 IWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 832 ~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
...........+...+.++++.++.+
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccC
Confidence 55443332334445556777766653
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.04 E-value=5.1 Score=23.38 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=4.4
Q ss_pred cccEEeccCCCC
Q 002156 113 YLRYLNLSGTHI 124 (959)
Q Consensus 113 ~L~~L~L~~n~i 124 (959)
+|++|+|++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.69 E-value=10 Score=23.26 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=9.2
Q ss_pred CcccEEeccCCCCc
Q 002156 112 RYLRYLNLSGTHIR 125 (959)
Q Consensus 112 ~~L~~L~L~~n~i~ 125 (959)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.10 E-value=12 Score=41.61 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=18.5
Q ss_pred cCCCCcceeeccccccc-cccCC-CCCCCCCccEEEecCCcCcC
Q 002156 744 HNLCQLQEIEIWNCGNL-VSFPE-GGLPCAKLMRLEIYGCERLE 785 (959)
Q Consensus 744 ~~l~~L~~L~l~~~~~l-~~~~~-~~~~~~~L~~L~l~~~~~~~ 785 (959)
...|+|++|+|++|... ...++ .-.....|++|.+.||++..
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34556666666665111 11111 00112356666666666543
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.65 E-value=86 Score=21.69 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=7.6
Q ss_pred ccCCCCCceEeecc
Q 002156 864 FPLPASLTSLEISF 877 (959)
Q Consensus 864 ~~~~~~L~~L~l~~ 877 (959)
+.+|++|++|.++.
T Consensus 30 ~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 30 GSLPNSLKSLSFGY 43 (44)
T ss_pred CccCCCceEEEeeC
Confidence 34556666665543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.90 E-value=44 Score=37.38 Aligned_cols=80 Identities=15% Similarity=0.031 Sum_probs=35.0
Q ss_pred cccceEEEecCCCCC--CccccccCCCCcceeeeccCCCc-ccCCCCc--CCCCCCeEEEecCCCCcccChh-----hhc
Q 002156 532 CRLEYLTLSGCQGLV--KLPQSSLSLSSLREIVIYKCSSL-VSFPEVA--LPSKLKKINIWHCDALKSLPEA-----WMC 601 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l-~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~-----~~~ 601 (959)
|.+..+++++|++.. .+.......|+|+.|+|++|... ..-+++. ....|++|-+.||+..+..... .+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 445555555554422 12222233455666666655221 1111111 1234666666666665543211 111
Q ss_pred CCCCCccEEE
Q 002156 602 DTNSSLEILT 611 (959)
Q Consensus 602 ~~l~~L~~L~ 611 (959)
..+|+|..||
T Consensus 298 ~~FPKL~~LD 307 (585)
T KOG3763|consen 298 ELFPKLLRLD 307 (585)
T ss_pred Hhcchheeec
Confidence 3456666655
Done!