Query 002156
Match_columns 959
No_of_seqs 515 out of 4229
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6E-55 2.1E-59 526.5 25.0 427 463-950 307-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-51 4.4E-56 497.4 26.5 648 59-906 50-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-43 5.7E-48 424.0 37.9 352 533-930 249-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-42 4.5E-47 416.1 35.9 549 78-856 16-593 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-39 6.3E-44 383.6 36.7 289 533-906 262-559 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.1E-40 2.4E-44 387.1 32.8 519 78-833 24-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-40 1.1E-44 390.0 28.6 246 532-830 285-532 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.3E-40 1.1E-44 389.9 26.7 515 59-812 33-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-35 4.1E-40 362.1 36.1 287 474-832 266-560 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-35 1.5E-39 357.0 33.6 106 87-192 22-132 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 5.4E-35 1.9E-39 343.1 32.8 271 533-909 258-535 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.2E-35 1.1E-39 345.0 28.8 247 532-831 282-530 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-34 2.3E-38 331.9 30.5 210 78-331 17-234 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-33 1.4E-37 322.3 32.4 255 494-834 215-483 (520)
15 4eco_A Uncharacterized protein 100.0 1.4E-34 4.8E-39 340.4 20.0 125 59-190 81-280 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-32 5E-37 320.5 30.8 95 91-188 7-103 (549)
17 4eco_A Uncharacterized protein 100.0 1E-33 3.6E-38 332.9 17.8 181 721-929 431-633 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 4.5E-33 1.5E-37 331.5 22.9 69 122-190 435-522 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-32 4.4E-37 328.0 26.4 135 699-833 445-581 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-32 5.8E-37 317.3 23.8 450 79-810 13-483 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-31 5.1E-36 318.8 26.3 125 60-193 53-183 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.6E-30 5.4E-35 309.6 29.2 147 99-331 435-606 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-30 6E-35 302.7 27.4 222 532-833 276-511 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-31 3.3E-35 304.9 23.4 471 57-812 29-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 6.1E-30 2.1E-34 286.9 22.2 79 87-177 9-88 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 6.3E-28 2.2E-32 270.5 18.1 368 462-927 46-428 (454)
27 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-27 7.8E-32 266.3 20.1 100 80-188 33-132 (457)
28 3v47_A TOLL-like receptor 5B a 99.9 3.8E-27 1.3E-31 267.7 20.8 378 384-831 14-407 (455)
29 3v47_A TOLL-like receptor 5B a 99.9 8.2E-26 2.8E-30 256.7 23.6 364 474-909 30-412 (455)
30 1o6v_A Internalin A; bacterial 99.9 1.8E-25 6.2E-30 253.6 24.4 343 87-616 44-386 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 6E-26 2.1E-30 254.7 16.2 209 53-331 36-244 (457)
32 1o6v_A Internalin A; bacterial 99.9 2E-24 7E-29 245.0 26.4 193 699-910 199-392 (466)
33 2id5_A Lingo-1, leucine rich r 99.9 4.6E-24 1.6E-28 243.5 25.1 177 699-879 152-331 (477)
34 4fmz_A Internalin; leucine ric 99.9 8.1E-24 2.8E-28 230.7 23.5 105 497-619 42-146 (347)
35 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.8E-28 228.1 22.9 300 532-926 44-344 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 1E-23 3.5E-28 240.6 21.7 281 469-831 51-332 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 4.3E-24 1.5E-28 236.6 15.1 301 56-434 42-350 (390)
38 3o6n_A APL1; leucine-rich repe 99.9 2.5E-23 8.5E-28 230.5 20.4 311 472-835 43-355 (390)
39 3oja_B Anopheles plasmodium-re 99.9 4.5E-23 1.5E-27 241.2 19.6 311 472-835 49-361 (597)
40 1xku_A Decorin; proteoglycan, 99.9 7.3E-22 2.5E-26 213.2 24.3 195 700-902 122-329 (330)
41 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-23 9E-28 221.8 11.6 81 532-614 50-134 (313)
42 3oja_B Anopheles plasmodium-re 99.9 3.7E-22 1.3E-26 233.5 22.3 307 497-926 49-356 (597)
43 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-23 1.1E-27 221.1 11.7 202 700-928 102-304 (313)
44 2ft3_A Biglycan; proteoglycan, 99.9 7.1E-22 2.4E-26 213.3 21.4 285 532-903 33-331 (332)
45 4fcg_A Uncharacterized protein 99.9 5.4E-22 1.8E-26 212.8 18.9 232 531-830 80-312 (328)
46 1xku_A Decorin; proteoglycan, 99.9 2.8E-21 9.7E-26 208.5 22.1 292 473-829 30-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 1E-21 3.5E-26 212.1 18.0 125 475-616 34-158 (332)
48 3ogk_B Coronatine-insensitive 99.9 1.9E-23 6.6E-28 245.9 4.2 206 699-908 293-528 (592)
49 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-24 7.3E-29 245.5 -4.3 226 699-926 170-438 (461)
50 4fcg_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 209.6 15.3 191 86-336 78-269 (328)
51 2z66_A Variable lymphocyte rec 99.8 2.5E-20 8.5E-25 198.9 14.6 135 699-833 126-262 (306)
52 3ogk_B Coronatine-insensitive 99.8 6E-22 2E-26 233.2 2.0 340 532-901 164-547 (592)
53 1z7x_W Ribonuclease inhibitor; 99.8 9.6E-23 3.3E-27 231.9 -5.1 326 532-926 28-409 (461)
54 2z80_A TOLL-like receptor 2, v 99.8 1.4E-19 4.7E-24 197.2 15.9 163 719-903 145-312 (353)
55 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.2E-24 197.6 15.4 222 699-926 76-312 (353)
56 3zyi_A Leucine-rich repeat-con 99.8 3.2E-19 1.1E-23 201.3 19.1 222 697-926 73-301 (452)
57 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-19 5.4E-24 190.3 15.1 134 699-832 105-238 (285)
58 2z66_A Variable lymphocyte rec 99.8 2.1E-19 7.1E-24 191.7 14.8 224 698-926 27-259 (306)
59 2p1m_B Transport inhibitor res 99.8 2.1E-21 7.2E-26 228.7 -0.9 130 475-615 106-245 (594)
60 3zyi_A Leucine-rich repeat-con 99.8 4.3E-19 1.5E-23 200.2 17.4 228 531-832 74-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 7.1E-19 2.4E-23 197.7 18.9 221 698-926 63-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-20 1.1E-24 198.6 7.3 217 531-832 33-250 (317)
63 3zyj_A Leucine-rich repeat-con 99.8 8.3E-19 2.8E-23 197.2 19.2 227 531-832 63-292 (440)
64 1ozn_A Reticulon 4 receptor; N 99.8 6.5E-19 2.2E-23 185.6 16.7 203 697-904 30-237 (285)
65 2p1m_B Transport inhibitor res 99.8 9.5E-22 3.2E-26 231.6 -6.4 202 699-904 289-518 (594)
66 3oja_A Leucine-rich immune mol 99.8 1.4E-19 4.9E-24 204.9 10.6 238 530-855 32-270 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.8 6.3E-18 2.1E-22 194.9 22.5 76 91-176 42-117 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.5E-22 191.5 24.8 257 532-904 40-296 (622)
69 2z62_A TOLL-like receptor 4, v 99.8 1.6E-18 5.3E-23 181.7 13.4 202 697-903 26-235 (276)
70 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-18 5E-23 185.6 12.2 214 699-927 34-249 (317)
71 1wwl_A Monocyte differentiatio 99.8 6.6E-19 2.3E-23 187.8 8.3 220 701-926 65-307 (312)
72 3oja_A Leucine-rich immune mol 99.8 3.2E-18 1.1E-22 193.8 13.6 215 699-928 34-250 (487)
73 1wwl_A Monocyte differentiatio 99.7 1.1E-18 3.9E-23 186.0 8.8 245 699-958 43-310 (312)
74 1p9a_G Platelet glycoprotein I 99.7 1.9E-17 6.4E-22 173.8 17.2 176 699-903 31-206 (290)
75 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.6E-22 170.3 13.2 201 698-928 30-239 (239)
76 2o6q_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 170.7 16.1 181 698-904 36-217 (270)
77 2o6q_A Variable lymphocyte rec 99.7 6E-17 2E-21 168.7 17.7 196 700-926 17-216 (270)
78 2xwt_C Thyrotropin receptor; s 99.7 9.1E-17 3.1E-21 164.1 17.3 155 720-904 77-238 (239)
79 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.3E-21 165.3 17.0 203 552-832 6-208 (290)
80 3rfs_A Internalin B, repeat mo 99.7 2.7E-17 9.4E-22 171.4 9.5 113 718-830 104-216 (272)
81 2z62_A TOLL-like receptor 4, v 99.7 1.3E-16 4.6E-21 166.9 14.2 205 532-809 28-238 (276)
82 4glp_A Monocyte differentiatio 99.7 6.9E-16 2.3E-20 164.3 19.7 202 532-808 91-307 (310)
83 2ast_B S-phase kinase-associat 99.7 8.9E-18 3.1E-22 181.9 5.0 220 700-925 48-282 (336)
84 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.8E-21 170.4 13.1 222 700-926 65-305 (310)
85 3rfs_A Internalin B, repeat mo 99.7 1.6E-16 5.5E-21 165.6 14.0 152 699-856 63-214 (272)
86 2ast_B S-phase kinase-associat 99.7 8.1E-18 2.8E-22 182.2 4.1 155 700-857 119-282 (336)
87 1h6u_A Internalin H; cell adhe 99.7 2.5E-16 8.5E-21 167.2 11.2 171 84-331 58-228 (308)
88 3m19_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 155.5 14.2 131 699-829 35-165 (251)
89 1h6u_A Internalin H; cell adhe 99.6 9.2E-16 3.1E-20 162.7 11.8 140 34-190 41-180 (308)
90 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.3E-19 156.6 20.8 156 716-901 97-255 (350)
91 3m19_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 154.7 13.4 131 700-830 60-190 (251)
92 2ca6_A RAN GTPase-activating p 99.6 1.4E-17 4.7E-22 183.9 -3.9 20 884-903 294-314 (386)
93 3goz_A Leucine-rich repeat-con 99.6 1.8E-17 6.1E-22 180.8 -4.3 159 699-857 80-263 (362)
94 3goz_A Leucine-rich repeat-con 99.6 1.8E-16 6.2E-21 172.9 0.8 229 696-926 19-295 (362)
95 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.1E-19 157.5 15.1 220 697-924 28-255 (350)
96 2ca6_A RAN GTPase-activating p 99.6 2.6E-16 8.8E-21 173.7 1.2 226 699-926 32-314 (386)
97 2o6s_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 146.8 10.5 133 698-830 27-159 (208)
98 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.5E-19 142.8 9.2 105 722-830 43-147 (197)
99 1h6t_A Internalin B; cell adhe 99.5 1.7E-14 5.9E-19 151.4 10.4 169 86-331 43-211 (291)
100 2v9t_B SLIT homolog 2 protein 99.5 3.5E-14 1.2E-18 142.1 11.4 135 697-832 30-165 (220)
101 1h6t_A Internalin B; cell adhe 99.5 5.3E-14 1.8E-18 147.7 11.6 166 699-903 46-211 (291)
102 3cvr_A Invasion plasmid antige 99.5 1.9E-13 6.5E-18 155.4 14.4 178 700-906 60-244 (571)
103 2v70_A SLIT-2, SLIT homolog 2 99.5 7.8E-14 2.7E-18 139.6 9.9 135 698-832 31-166 (220)
104 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 138.8 11.8 135 697-832 38-172 (229)
105 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.6E-18 136.3 10.3 148 699-857 44-191 (197)
106 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 146.7 5.9 56 272-331 128-183 (263)
107 3cvr_A Invasion plasmid antige 99.4 5.3E-13 1.8E-17 151.8 15.3 176 723-927 59-242 (571)
108 1m9s_A Internalin B; cell inva 99.4 1E-13 3.4E-18 159.8 9.0 99 85-189 39-137 (605)
109 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 131.2 14.7 108 723-830 32-139 (220)
110 1m9s_A Internalin B; cell inva 99.4 4.9E-13 1.7E-17 154.1 13.2 166 699-903 43-208 (605)
111 2o6s_A Variable lymphocyte rec 99.4 6E-13 2E-17 132.3 12.1 164 722-893 27-190 (208)
112 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 131.4 14.7 149 725-903 21-170 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 130.8 14.1 126 702-830 14-140 (220)
114 2xot_A Amphoterin-induced prot 99.4 3.8E-13 1.3E-17 146.2 9.5 132 699-830 39-174 (361)
115 2je0_A Acidic leucine-rich nuc 99.4 5.5E-13 1.9E-17 124.5 9.2 125 57-190 15-147 (149)
116 2ell_A Acidic leucine-rich nuc 99.4 5.8E-13 2E-17 127.3 9.2 127 59-194 24-158 (168)
117 2xot_A Amphoterin-induced prot 99.4 4E-13 1.4E-17 146.0 8.3 160 663-833 39-203 (361)
118 2ell_A Acidic leucine-rich nuc 99.4 1.9E-12 6.6E-17 123.6 10.4 138 31-178 21-165 (168)
119 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.7E-17 125.6 9.2 131 53-194 13-151 (176)
120 1xeu_A Internalin C; cellular 99.3 2.7E-12 9.1E-17 132.3 11.7 119 55-188 37-155 (263)
121 2je0_A Acidic leucine-rich nuc 99.3 1.6E-13 5.6E-18 128.1 1.2 132 721-855 15-148 (149)
122 2wfh_A SLIT homolog 2 protein 99.3 3.1E-12 1.1E-16 124.7 9.5 113 78-194 22-137 (193)
123 1w8a_A SLIT protein; signaling 99.3 2.8E-12 9.4E-17 125.3 9.1 128 702-832 11-139 (192)
124 1dce_A Protein (RAB geranylger 99.3 1.9E-13 6.5E-18 156.6 -0.0 185 699-921 349-566 (567)
125 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 151.4 9.6 154 34-193 173-326 (727)
126 3sb4_A Hypothetical leucine ri 99.3 8.7E-11 3E-15 125.9 19.5 125 699-826 202-328 (329)
127 1w8a_A SLIT protein; signaling 99.3 7.7E-12 2.6E-16 122.1 8.6 112 78-193 20-136 (192)
128 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.6E-17 154.6 3.3 191 701-903 203-402 (727)
129 2wfh_A SLIT homolog 2 protein 99.2 2.8E-11 9.6E-16 117.9 10.3 109 723-832 31-139 (193)
130 1dce_A Protein (RAB geranylger 99.2 1.8E-11 6.2E-16 140.2 9.7 101 90-194 442-544 (567)
131 1a9n_A U2A', U2A'; complex (nu 99.2 3.8E-11 1.3E-15 115.4 9.8 129 33-174 18-154 (176)
132 2o6r_A Variable lymphocyte rec 99.2 8.6E-11 3E-15 113.1 10.7 110 723-832 28-137 (177)
133 2o6r_A Variable lymphocyte rec 99.1 7.7E-11 2.6E-15 113.5 9.1 115 698-812 27-141 (177)
134 1ds9_A Outer arm dynein; leuci 99.1 2.6E-12 8.8E-17 126.4 -1.6 107 54-170 43-151 (198)
135 3sb4_A Hypothetical leucine ri 99.1 1.7E-10 5.7E-15 123.6 10.9 291 497-853 23-327 (329)
136 2r9u_A Variable lymphocyte rec 99.1 8.5E-11 2.9E-15 112.2 7.7 99 78-180 24-125 (174)
137 1ds9_A Outer arm dynein; leuci 99.1 2.6E-12 9E-17 126.3 -4.0 111 78-192 37-149 (198)
138 3g39_A Variable lymphocyte rec 99.0 4E-10 1.4E-14 107.2 8.2 90 78-170 21-113 (170)
139 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 103.0 11.2 105 725-832 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.0 2E-09 6.9E-14 102.6 11.3 104 726-832 15-118 (174)
141 4fdw_A Leucine rich hypothetic 99.0 1.2E-08 4.2E-13 111.3 19.0 110 717-830 265-381 (401)
142 4fdw_A Leucine rich hypothetic 98.9 5.3E-08 1.8E-12 106.3 19.3 184 722-943 202-394 (401)
143 2ifg_A High affinity nerve gro 98.8 7.1E-09 2.4E-13 112.0 7.4 90 79-170 22-114 (347)
144 4fs7_A Uncharacterized protein 98.8 1.6E-07 5.4E-12 103.2 18.2 128 718-856 248-375 (394)
145 3un9_A NLR family member X1; l 98.7 5.7E-10 1.9E-14 120.7 -2.3 133 699-831 72-223 (372)
146 4fs7_A Uncharacterized protein 98.7 7.2E-07 2.5E-11 97.9 21.4 190 718-923 180-374 (394)
147 3un9_A NLR family member X1; l 98.7 1.1E-09 3.8E-14 118.3 -2.7 137 722-858 71-222 (372)
148 2ifg_A High affinity nerve gro 98.6 5E-08 1.7E-12 105.3 9.6 103 704-808 13-116 (347)
149 2ra8_A Uncharacterized protein 98.5 1E-07 3.5E-12 101.9 7.0 163 715-903 131-318 (362)
150 4gt6_A Cell surface protein; l 98.5 1.6E-05 5.5E-10 87.1 23.5 128 717-856 259-387 (394)
151 2ra8_A Uncharacterized protein 98.3 1.2E-06 3.9E-11 93.7 9.0 64 549-614 165-228 (362)
152 4gt6_A Cell surface protein; l 98.2 5.9E-05 2E-09 82.5 19.4 106 717-829 282-388 (394)
153 3e4g_A ATP synthase subunit S, 98.0 3.6E-06 1.2E-10 78.2 5.1 94 795-908 61-155 (176)
154 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 78.2 4.3 88 532-620 61-154 (176)
155 4h09_A Hypothetical leucine ri 98.0 0.0006 2.1E-08 74.1 22.0 104 719-826 236-340 (379)
156 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.7E-10 80.6 6.6 103 86-190 138-258 (267)
157 4h09_A Hypothetical leucine ri 97.9 0.0004 1.4E-08 75.5 19.0 114 700-818 241-355 (379)
158 1io0_A Tropomodulin; LRR prote 97.8 1.5E-05 5E-10 76.5 4.8 114 55-170 32-162 (185)
159 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.4E-10 76.3 4.4 110 83-193 30-161 (185)
160 3rw6_A Nuclear RNA export fact 97.7 1.3E-05 4.4E-10 80.8 2.7 81 719-801 166-257 (267)
161 3rfe_A Platelet glycoprotein I 96.0 0.0086 3E-07 52.8 5.7 51 93-145 12-65 (130)
162 1pgv_A TMD-1, tropomodulin TMD 94.6 0.027 9.1E-07 53.3 4.3 65 744-808 38-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 94.2 0.037 1.3E-06 52.3 4.5 60 85-144 66-135 (197)
164 3rfe_A Platelet glycoprotein I 93.9 0.078 2.7E-06 46.6 5.7 35 796-830 32-66 (130)
165 2a5y_B CED-4; apoptosis; HET: 64.1 1 3.6E-05 50.9 -1.1 18 1-18 456-473 (549)
166 2lz0_A Uncharacterized protein 22.7 1.5E+02 0.0052 23.9 5.6 37 719-756 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-55 Score=526.49 Aligned_cols=427 Identities=15% Similarity=0.070 Sum_probs=229.2
Q ss_pred cCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcc-cchhhhHHHHHhhhhhcccccceEEEec
Q 002156 463 VGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 463 ~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
.+.+|..|.++++|+.+++++|.+....+...+..+++|++|++++| .++ .++.. +. ...++|++|++++
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-l~-------~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES-LT-------NLSASLLTLDLSS 377 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTT-HH-------HHTTTCSEEECCS
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHH-HH-------hhhcCCcEEEccC
Confidence 33444445555555555555554432233333445555555555553 222 22211 10 0112566666666
Q ss_pred CCCCCCccccccC--CCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCC
Q 002156 542 CQGLVKLPQSSLS--LSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 542 ~~~~~~~~~~l~~--l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
|.+.+.+|..+.. +++|++|++++|.....+| .+..+++|++|++++|...+.+|..+ ..+++|++|++++|...
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCC
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCccc
Confidence 6655555554444 5566666666664444444 24455666666666665555555544 45556666666554322
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++. ....+++|+.|++++|.-.. .+|..+. .+
T Consensus 456 ~~~p~----------------------------------~~~~l~~L~~L~L~~N~l~~------~~p~~l~-----~l- 489 (768)
T 3rgz_A 456 GEIPQ----------------------------------ELMYVKTLETLILDFNDLTG------EIPSGLS-----NC- 489 (768)
T ss_dssp SCCCG----------------------------------GGGGCTTCCEEECCSSCCCS------CCCGGGG-----GC-
T ss_pred CcCCH----------------------------------HHcCCCCceEEEecCCcccC------cCCHHHh-----cC-
Confidence 11111 11112233333333321110 1111111 11
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|+..+.+|..+..+..+..+.+
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 57788888888777777777888888888888888777777877888888888888888777777765554443333222
Q ss_pred cCC---------c-------------CcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhh
Q 002156 779 YGC---------E-------------RLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSM 836 (959)
Q Consensus 779 ~~~---------~-------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 836 (959)
..+ . +.+..+..+..++.++.++++.|.+.+.+|..++.+++|+.||+++|......+
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 210 0 111112222233334444444455555555555555555556665554332211
Q ss_pred hhhccCCCCCCCccEEEEcccCCCcc---cccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCC
Q 002156 837 IERGRGFHGFSSLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGL 913 (959)
Q Consensus 837 ~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 913 (959)
..+..+++|+.|++++|..... .+.-+++|+.||+++|...+.+|..+..+++|++|++++|+.-..+|..+.
T Consensus 650 ----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 650 ----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred ----HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 2344555555666555432211 122446677777777666668999999999999999999998899998877
Q ss_pred ccccceeeccCChhHH----HHHhhcCCCccccccCcceEE
Q 002156 914 PSSLLRLWIEGCPLIE----EKCRKDGGQYWDLLTHIPRVQ 950 (959)
Q Consensus 914 ~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~i~~~~~~~ 950 (959)
+.++....+.|||.++ ..|....+++|.+|+|.|.++
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 7788888888887543 269999999999999999764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-51 Score=497.43 Aligned_cols=648 Identities=16% Similarity=0.095 Sum_probs=343.8
Q ss_pred CcccEEeccccCCCCCCccccc---ccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCc-ccch--hhh
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYS---ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIR-ALPE--SVN 132 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~-~lp~--~i~ 132 (959)
.+++.|.+.+.. +.+. +++++.++++|+.++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 466777665533 2334 677778888888888888877667777888888888888888776 4566 778
Q ss_pred ccccccEEeccCcchhhhhhHhh-hcccccceeecCCCCcccccccc---cccccCCceeceEEeccCCCCChhhhhhhh
Q 002156 133 KLYNLHTLLLEDCRELKKLCADM-GNLIKLHHHNNSNTDSLEEMPLG---IGKLTCLQTLCNFVVGKDSGSGLSELKLLM 208 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 208 (959)
++++|++|++++|.....+|..+ +++++|++|++++|......|.. ++++++|++|++..+....
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 192 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG----------- 192 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES-----------
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc-----------
Confidence 88888888888865555566554 77888888888888733333333 5666777766432211000
Q ss_pred hcccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCC-CC
Q 002156 209 HLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGM-KF 287 (959)
Q Consensus 209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~ 287 (959)
. ..+..+++|++|++++|.... ..+.+..+++|++|+++++... .+
T Consensus 193 -------------~--------~~~~~l~~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 193 -------------D--------VDVSRCVNLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp -------------C--------CBCTTCTTCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred -------------c--------CCcccCCcCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcc
Confidence 0 002344555555555554421 1112444455555555554443 22
Q ss_pred CccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccc
Q 002156 288 PTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWI 367 (959)
Q Consensus 288 p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 367 (959)
|..+.. +++|++|++++|.+.+.+|.. .+++|++|++++|.....+
T Consensus 240 ~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~i------------------------------- 285 (768)
T 3rgz_A 240 SRAIST--CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEI------------------------------- 285 (768)
T ss_dssp HHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESC-------------------------------
T ss_pred cHHHhc--CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCcc-------------------------------
Confidence 333322 455555555555444443333 4455555555544322111
Q ss_pred cccCCCCccc-cccccceeccccCccccCCCCC---CCCCccEEEEeccCCc---cc-ccCCCCCccEEEecCCCchhhh
Q 002156 368 SHGSSQGVVE-GFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEEL---SV-SVSRLPALCKLQIGGCKKVVWE 439 (959)
Q Consensus 368 ~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~-~~~~l~~L~~L~l~~~~~l~~~ 439 (959)
+.... .+++|++|++++| .+++.+|. .+++|++|++++|... .. .+..+++|+.|++++|.
T Consensus 286 -----p~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~----- 354 (768)
T 3rgz_A 286 -----PDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE----- 354 (768)
T ss_dssp -----CCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-----
T ss_pred -----CHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-----
Confidence 11122 2355555555553 34434442 2344444444444321 11 24556666666666665
Q ss_pred cccccCCCCCcceecccCCcceecCCCCCCCCCcc-eEEEeccCcccccccccCcccc-cCCCccEEEEccCCCcccchh
Q 002156 440 SATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLE-ELEIIDMKEQTYIWKSHNGLLQ-DISSLKRLTIASCPKLQSLVA 517 (959)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~ 517 (959)
+.+.+|..+.++. +|+.+++++|.+....+..... .+++|++|++++| .++...+
T Consensus 355 ----------------------l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p 411 (768)
T 3rgz_A 355 ----------------------FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIP 411 (768)
T ss_dssp ----------------------EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECC
T ss_pred ----------------------cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccC
Confidence 4444555555554 5666666666553322222211 1445555555553 2221111
Q ss_pred hhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccC
Q 002156 518 EEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLP 596 (959)
Q Consensus 518 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 596 (959)
..+ .-+++|++|++++|.+.+.+|..+..+++|++|++++|.....+| .+..+++|++|++++|...+.+|
T Consensus 412 ~~l--------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 412 PTL--------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp GGG--------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred HHH--------hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 111 011455555555555555555555555555555555554443444 23445555555555555554554
Q ss_pred hhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccc
Q 002156 597 EAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSL 676 (959)
Q Consensus 597 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 676 (959)
..+ ..+++|++|++++|.....++ .....+++|+.|++++|.-.
T Consensus 484 ~~l--~~l~~L~~L~L~~N~l~~~~p----------------------------------~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 484 SGL--SNCTNLNWISLSNNRLTGEIP----------------------------------KWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp GGG--GGCTTCCEEECCSSCCCSCCC----------------------------------GGGGGCTTCCEEECCSSCCE
T ss_pred HHH--hcCCCCCEEEccCCccCCcCC----------------------------------hHHhcCCCCCEEECCCCccc
Confidence 444 445555555555543221111 11111223333333332211
Q ss_pred ccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeeccc----------------------C
Q 002156 677 TCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSC----------------------G 734 (959)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------------------~ 734 (959)
. .+|..+.. + ++|+.|++++|...+.+|..+..+..+..+.+..+ .
T Consensus 528 ~------~~p~~l~~-----l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 528 G------NIPAELGD-----C-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp E------ECCGGGGG-----C-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred C------cCCHHHcC-----C-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 0 01111111 1 35555555555555555555444443333322211 0
Q ss_pred CCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc
Q 002156 735 NLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE 814 (959)
Q Consensus 735 ~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 814 (959)
..+..+..+..++.++.+++..+...+.+|..+..+++|++|++++|++.+.+|..++++++|+.|++++|.+.+.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 11122233334445555556666666667777778888888888888888888888888888888888888888888888
Q ss_pred CCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCC
Q 002156 815 DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQIL 894 (959)
Q Consensus 815 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 894 (959)
++.+++|++||+++|......+ ..+..+++|++|++++ |+..+.+|. .+.+.++
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~ls~---------------------N~l~g~iP~-~~~~~~~ 729 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIP----QAMSALTMLTEIDLSN---------------------NNLSGPIPE-MGQFETF 729 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCC----GGGGGCCCCSEEECCS---------------------SEEEEECCS-SSSGGGS
T ss_pred HhCCCCCCEEECCCCcccCcCC----hHHhCCCCCCEEECcC---------------------CcccccCCC-chhhccC
Confidence 8888888888888886443222 3344555555555554 444445663 3455566
Q ss_pred cEEecCCCcCCC
Q 002156 895 TELRLYHCRKLK 906 (959)
Q Consensus 895 ~~L~l~~c~~l~ 906 (959)
....+.+|+.+-
T Consensus 730 ~~~~~~gN~~Lc 741 (768)
T 3rgz_A 730 PPAKFLNNPGLC 741 (768)
T ss_dssp CGGGGCSCTEEE
T ss_pred CHHHhcCCchhc
Confidence 666677776553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-43 Score=423.97 Aligned_cols=352 Identities=17% Similarity=0.073 Sum_probs=247.1
Q ss_pred ccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcc-----cCh----hhhcC
Q 002156 533 RLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKS-----LPE----AWMCD 602 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~----~~~~~ 602 (959)
+|++|++++|.+.+..|..++.+++|++|++++|......+ .+..+++|+.|++++|..... +|. .+ .
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~--~ 326 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF--Q 326 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT--T
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc--c
Confidence 47777777776665555666677777777777765444333 355566677777666543221 111 11 3
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 603 TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
.+++|++|++++|. .....+..+..+++|+.|++++|..-....+.
T Consensus 327 ~l~~L~~L~l~~n~----------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 327 WLKCLEHLNMEDND----------------------------------IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TCTTCCEEECCSCC----------------------------------BCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCCEEECCCCc----------------------------------cCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 45555555555532 11112222334556666666665311110111
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeecccccccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLV 761 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~ 761 (959)
..+.. + -.++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|....
T Consensus 373 ~~f~~-~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 373 ETFVS-L-------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp TTTGG-G-------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhcc-c-------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 11100 0 01478999999999888888889999999999999998887665 678899999999999998766
Q ss_pred ccCCCCCCCCCccEEEecCCcCc--CccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhh-
Q 002156 762 SFPEGGLPCAKLMRLEIYGCERL--EALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIE- 838 (959)
Q Consensus 762 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~- 838 (959)
..+..+..+++|++|++++|.+. +..|..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.........
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 67778888999999999999875 567888999999999999999999777777899999999999999754321110
Q ss_pred ---hccCCCCCCCccEEEEcccCCCccc---ccCCCCCceEeeccCCCCcccccc-cCCCCCCcEEecCCCcCCCCCCCC
Q 002156 839 ---RGRGFHGFSSLRRLEIRGCDDDMVS---FPLPASLTSLEISFFPNLERLSSS-IVDLQILTELRLYHCRKLKYFPKK 911 (959)
Q Consensus 839 ---~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~ 911 (959)
....+.++++|+.|++++|....+. +.-+++|+.|++++ +.++.+|+. +..+++|++|++++| .++.++..
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChh
Confidence 1123678899999999998665443 34567899999998 578888874 678999999999996 67777765
Q ss_pred CC---ccccceeeccCChhHHH
Q 002156 912 GL---PSSLLRLWIEGCPLIEE 930 (959)
Q Consensus 912 ~~---~~~L~~L~l~~c~~l~~ 930 (959)
.+ .++|+.|++++||...+
T Consensus 603 ~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 603 VFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHHHTTCSEEECTTCCCCBC
T ss_pred HhcccccccCEEEccCCCcccC
Confidence 33 47899999999886543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-42 Score=416.12 Aligned_cols=549 Identities=16% Similarity=0.068 Sum_probs=291.7
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhH-h
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCA-D 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~ 154 (959)
..++|..+. +++++|++++|.++.+|. .|.++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|. .
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhh
Confidence 345555554 577888888888777743 677888888888888877766 566778888888888874 5566665 4
Q ss_pred hhcccccceeecCCCCccccccc-ccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhcc
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 233 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (959)
|+++++|++|++++|. +..+|. .|+++++|++|++..+
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n---------------------------------------- 131 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN---------------------------------------- 131 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS----------------------------------------
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC----------------------------------------
Confidence 7788888888888877 666653 4677777766643221
Q ss_pred CCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcc-ccCCCCCCccEEEEecCCCCCC
Q 002156 234 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTW-LGDSSFSNLVTLKFKNCGMCTA 312 (959)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~ 312 (959)
.... ..+..+..+++|++|+++++....++.. +....+++|++|++++|.+.+.
T Consensus 132 --------------~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 132 --------------GLSS-----------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp --------------CCSC-----------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred --------------cccc-----------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 1100 0011223344455555555444443321 1111246777777777766655
Q ss_pred CC-CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceeccccCc
Q 002156 313 LP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCS 391 (959)
Q Consensus 313 ~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 391 (959)
.+ .++.+++|+.|++.++........... .....++|+.|+++++
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~---------------------------------~~l~~~~L~~L~L~~n- 232 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLC---------------------------------LELANTSIRNLSLSNS- 232 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHH---------------------------------HHHTTSCCCEEECTTS-
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHH---------------------------------HHhhhccccEEEccCC-
Confidence 55 566677777777766542111000000 0001234555555542
Q ss_pred cccCCCCCCCC-----CccEEEEeccCCcc---cccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceec
Q 002156 392 KLKGTFPEHLP-----ALEMLVIEGCEELS---VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLV 463 (959)
Q Consensus 392 ~l~~~~p~~l~-----~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (959)
.+++..|..+. +|++|++++|.... ..+..+++|+.|++++|. +.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---------------------------l~ 285 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------------------IQ 285 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC---------------------------BS
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc---------------------------cC
Confidence 33323332221 13333333322111 123444555555555554 22
Q ss_pred CCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCC
Q 002156 464 GPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQ 543 (959)
Q Consensus 464 ~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 543 (959)
+..+..|..+++|+.++++++....... ...++ .+....+ ..+++|++|++++|.
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~lp--------------~i~~~~~--------~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSIS---LASLP--------------KIDDFSF--------QWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC---------CC--------------EECTTTT--------TTCTTCCEEECCSCC
T ss_pred ccChhhhcCCCCccEEeccchhhhcccc---ccccc--------------ccChhhc--------ccCCCCCEEECCCCc
Confidence 3333344445555555544332100000 00001 1100000 112788888888888
Q ss_pred CCCCccccccCCCCcceeeeccCCC-cccCCC--Cc--CCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCC
Q 002156 544 GLVKLPQSSLSLSSLREIVIYKCSS-LVSFPE--VA--LPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 544 ~~~~~~~~l~~l~~L~~L~L~~~~~-l~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
+.+..+..+.++++|++|++++|.. ...++. +. ..++|+.|++++|...+..+..+ ..+++|++|++++|...
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCc
Confidence 8877777888899999999988853 223332 11 13578888888888766656555 67778888888775422
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++... +..+
T Consensus 419 ~~~~~~~--------------------------------------------------------------------~~~l- 429 (680)
T 1ziw_A 419 QELTGQE--------------------------------------------------------------------WRGL- 429 (680)
T ss_dssp EECCSGG--------------------------------------------------------------------GTTC-
T ss_pred cccCccc--------------------------------------------------------------------ccCc-
Confidence 2111100 0111
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC--cccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL--KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
++|++|++++|...+..+..+..+++|++|++++|... +.+|..+..+++|++|++++|......+..+..+++|++|
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 34555555555544444445555666666666665543 3455566666666666666664443333345556666666
Q ss_pred EecCCcCcCccc--------cccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 777 EIYGCERLEALP--------KGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 777 ~l~~~~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++++|++.+..+ ..+.++++|+.|++++|.+....+..+..+++|++|++++|...... ...+..+++
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~ 585 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP----ASVFNNQVS 585 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTT
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC----HhHhCCCCC
Confidence 666666543211 12456666666666666666333334566666666666666432111 123344455
Q ss_pred ccEEEEcc
Q 002156 849 LRRLEIRG 856 (959)
Q Consensus 849 L~~L~l~~ 856 (959)
|+.|++++
T Consensus 586 L~~L~L~~ 593 (680)
T 1ziw_A 586 LKSLNLQK 593 (680)
T ss_dssp CCEEECTT
T ss_pred CCEEECCC
Confidence 55555554
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-39 Score=383.56 Aligned_cols=289 Identities=18% Similarity=0.127 Sum_probs=146.3
Q ss_pred ccceEEE-ecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 533 RLEYLTL-SGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 533 ~L~~L~L-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
.++.+++ ..+...+.+|. +..+++|++|++++|.. +.+|.+..+++|++|++++|.. +.+| .+ .+++|++|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~---~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL---DLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC---CCSSCCEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC---CCCccceee
Confidence 4666666 44444445554 77778888888887744 4566666677777777777776 5555 21 567777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|..+..++. .. +
T Consensus 335 l~~n~~~~~~~~-~~-----------------------------------l----------------------------- 349 (606)
T 3vq2_A 335 LTMNKGSISFKK-VA-----------------------------------L----------------------------- 349 (606)
T ss_dssp EESCSSCEECCC-CC-----------------------------------C-----------------------------
T ss_pred ccCCcCccchhh-cc-----------------------------------C-----------------------------
Confidence 777543322210 00 1
Q ss_pred cccCCCCCCCceEeeccChhhHH--HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLES--IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGL 768 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~ 768 (959)
++|++|++++|...+. ++..+..+++|++|++++|...+ +|..+..+++|++|++++|...+..| ..+.
T Consensus 350 -------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 350 -------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp -------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred -------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 2344444444433222 13344445555555554444322 33444455555555555554333333 2344
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCC-CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELP-SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFS 847 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 847 (959)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+ .+|..++.+++|++|++++|......+ ..+..++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~ 497 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLH 497 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh----hhhcccc
Confidence 44555555555555444444445555555555555555444 234444455555555555553221111 2233444
Q ss_pred CccEEEEcccCCCcc---cccCCCCCceEeeccCCCCcccccccCCCC-CCcEEecCCCcCCC
Q 002156 848 SLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSSIVDLQ-ILTELRLYHCRKLK 906 (959)
Q Consensus 848 ~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~ 906 (959)
+|++|++++|..... .+..+++|+.|++++ +.++.+|..+..++ +|++|++++|+..-
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 444444444322111 111233444444444 35667777666665 47777777766543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.1e-40 Score=387.09 Aligned_cols=519 Identities=15% Similarity=0.095 Sum_probs=309.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..++|..+.. .+++|++++|.++.+ |.+|+++++|++|+|++|++..+ |..|+++++|++|++++|......|..|
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 4556666643 578888888888777 56788888888888888888766 6678888888888888864444456678
Q ss_pred hcccccceeecCCCCcccccc-cccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccC
Q 002156 156 GNLIKLHHHNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (959)
+++++|++|++++|. +..++ ..++++++|++|
T Consensus 102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L---------------------------------------------- 134 (606)
T 3t6q_A 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESL---------------------------------------------- 134 (606)
T ss_dssp SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEE----------------------------------------------
T ss_pred cccccccEeeccccC-cccCCcchhccCCcccEE----------------------------------------------
Confidence 888888888888877 55542 224333333333
Q ss_pred CCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCC--CccccCCCCCCccEEEEecCCCCCC
Q 002156 235 GKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKF--PTWLGDSSFSNLVTLKFKNCGMCTA 312 (959)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~ 312 (959)
+++++....+ |.++ .+++|++|++++|.+...
T Consensus 135 -------------------------------------------~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 135 -------------------------------------------YLGSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp -------------------------------------------ECCSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEE
T ss_pred -------------------------------------------ECCCCcccccCccccc---CCcccCEEEcccCccccc
Confidence 3333333332 3333 278888888888887665
Q ss_pred CC-CCCCCCCcC--eeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccc--cceecc
Q 002156 313 LP-SMGQLPSLK--HLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPK--LRELHI 387 (959)
Q Consensus 313 ~~-~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~--L~~L~l 387 (959)
.+ .++.+++|+ +|++++|.........+. ...|+.|++.++....... ..+.+ ++.+.+
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~---------~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-------SAVFQSLNFGGTQNLLVIF---------KGLKNSTIQSLWL 232 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-------TCEEEEEECTTCSCHHHHH---------HHTTTCEEEEEEC
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhh-------hccccccccCCchhHHHHh---------hhccccchhheec
Confidence 44 567777777 777777654333222111 2344444444433211110 01111 111111
Q ss_pred ccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCCC
Q 002156 388 LRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLK 467 (959)
Q Consensus 388 ~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (959)
..+..+. .. ...+
T Consensus 233 ~~~~~~~-------------------------------------------~~------------------------~i~~ 245 (606)
T 3t6q_A 233 GTFEDMD-------------------------------------------DE------------------------DISP 245 (606)
T ss_dssp CCCTTSC-------------------------------------------CC------------------------CCCG
T ss_pred hhhcccc-------------------------------------------cc------------------------ccCh
Confidence 1111110 00 0000
Q ss_pred CCCCCcc--eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCC
Q 002156 468 PQLPKLE--ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGL 545 (959)
Q Consensus 468 ~~~~~L~--~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 545 (959)
..|..+. +|+.+++++|.+.. .....+..+++|++|+++++ .++.++..- .-+++|++|++++|.+.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l---------~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT-HLSELPSGL---------VGLSTLKKLVLSANKFE 314 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTS-CCSCCCSSC---------CSCTTCCEEECTTCCCS
T ss_pred hHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCC-ccCCCChhh---------cccccCCEEECccCCcC
Confidence 0111111 44455555544421 22233445555555555553 344333210 01256666666666666
Q ss_pred CCccccccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCccc--ChhhhcCCCCCccEEEEecCCCCccc
Q 002156 546 VKLPQSSLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSL--PEAWMCDTNSSLEILTISSCHSLTYF 621 (959)
Q Consensus 546 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~ 621 (959)
+..|..+..+++|++|++++|.....++. +..+++|++|++++|...... +..+ ..+++|++|++++|.. ..+
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l-~~~ 391 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEP-LSL 391 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSC-EEE
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcC-CcC
Confidence 55565666677777777777655444442 455667777777776654433 3333 5667777777776532 111
Q ss_pred cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCC
Q 002156 622 GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSL 701 (959)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L 701 (959)
.... ...+++|+.|+++++..... .+.. .+..+ ++|
T Consensus 392 ~~~~---------------------------------~~~l~~L~~L~l~~n~l~~~-~~~~---------~~~~l-~~L 427 (606)
T 3t6q_A 392 KTEA---------------------------------FKECPQLELLDLAFTRLKVK-DAQS---------PFQNL-HLL 427 (606)
T ss_dssp CTTT---------------------------------TTTCTTCSEEECTTCCEECC-TTCC---------TTTTC-TTC
T ss_pred CHHH---------------------------------hcCCccCCeEECCCCcCCCc-ccch---------hhhCc-ccC
Confidence 1100 01112333333333221100 0000 01122 578
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcc---cCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKI---LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++++|...+..|..++.+++|++|++++|.+.+. .+..+..+++|++|++++|...+..|..+..+++|++|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 8888888888777778888899999999999887663 2356788999999999999777667788888899999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhh
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIW 833 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 833 (959)
++|++.+..|..+.++++| .|++++|.+.+..|..+..+++|+.|++++|+...
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999888888889999999 99999999998888778888899999999997543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-40 Score=390.03 Aligned_cols=246 Identities=16% Similarity=0.089 Sum_probs=159.0
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|+.|++++|.+ ..+| .+..+++|++|++++|.. +.+|.+ .+++|++|++++|.....++ + ..+++|++|+
T Consensus 285 ~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEE
T ss_pred CCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEE
Confidence 5666666666665 3344 566677777777777755 566655 66777777777775544432 1 4667777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|.. +..+. .+.....+++|+.|++++|.- .. +|.
T Consensus 357 ls~n~l-~~~~~-------------------------------~~~~~~~~~~L~~L~L~~n~l-~~------~~~---- 393 (606)
T 3vq2_A 357 LSRNAL-SFSGC-------------------------------CSYSDLGTNSLRHLDLSFNGA-II------MSA---- 393 (606)
T ss_dssp CCSSCE-EEEEE-------------------------------CCHHHHCCSCCCEEECCSCSE-EE------ECC----
T ss_pred CcCCcc-CCCcc-------------------------------hhhhhccCCcccEeECCCCcc-cc------chh----
Confidence 776431 11100 000011122333333333321 10 000
Q ss_pred cccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccc-ccCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLV-SFPEGGLP 769 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~ 769 (959)
.++.+ ++|++|++++|...+..+ ..+..+++|++|++++|...+..|..+..+++|++|++++|.... .+|..+..
T Consensus 394 -~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 394 -NFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp -CCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred -hccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 01122 577888888877776666 567788888888888888777777778888888888888886655 36777777
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|++|++++|.+.+..|..++++++|+.|++++|.+.+..|..++.+++|++|++++|+
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 8888888888888777777777888888888888888887777777788888888888885
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-40 Score=389.92 Aligned_cols=515 Identities=14% Similarity=0.110 Sum_probs=306.2
Q ss_pred CcccEEeccccCCCCCCcccccc-cccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCccc-chhhhccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSI-LPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRAL-PESVNKLY 135 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~ 135 (959)
++++.|.+.++. ...+ |..|.++++|++|++++|.++.+ |.+|+++++|++|+|++|++..+ |..+++++
T Consensus 33 ~~l~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSFNV-------LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TTCCEEECTTCC-------CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CcCcEEEccCCc-------cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 379999998765 3444 56789999999999999999887 78999999999999999999877 77899999
Q ss_pred cccEEeccCcchhhhh-hHhhhcccccceeecCCCCcccccc-cccccccCCceeceEEeccCCCCChhhhhhhhhcccc
Q 002156 136 NLHTLLLEDCRELKKL-CADMGNLIKLHHHNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGA 213 (959)
Q Consensus 136 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 213 (959)
+|++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..+++|++|+
T Consensus 106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~------------------------ 159 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLD------------------------ 159 (606)
T ss_dssp TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEE------------------------
T ss_pred cccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEE------------------------
Confidence 9999999996 45555 6679999999999999998 66653 2233355555553
Q ss_pred eeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCC-Ccccc
Q 002156 214 LEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKF-PTWLG 292 (959)
Q Consensus 214 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~ 292 (959)
+++|.. ..+ |..+.
T Consensus 160 ------------------------------L~~n~l-----------------------------------~~~~~~~~~ 174 (606)
T 3t6q_A 160 ------------------------------FQNNAI-----------------------------------HYLSKEDMS 174 (606)
T ss_dssp ------------------------------CCSSCC-----------------------------------CEECHHHHH
T ss_pred ------------------------------cccCcc-----------------------------------cccChhhhh
Confidence 222221 111 11111
Q ss_pred CCCCCCcc--EEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 293 DSSFSNLV--TLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 293 ~~~l~~L~--~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
.+++|+ +|++++|.+.+..+......+|++|++++|..+........ ...++.+.+..+........
T Consensus 175 --~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~l~~l~~~~~~~~~~~~i-- 243 (606)
T 3t6q_A 175 --SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK-------NSTIQSLWLGTFEDMDDEDI-- 243 (606)
T ss_dssp --TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTT-------TCEEEEEECCCCTTSCCCCC--
T ss_pred --hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhcc-------ccchhheechhhcccccccc--
Confidence 134444 45555555544444333445566666666543221110000 11122222222221111110
Q ss_pred CCCCcccccc--ccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 371 SSQGVVEGFP--KLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 371 ~~~~~~~~~~--~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
.+..+..+. +|+.|+++++ .++ .++. ..+..+++|+.|+++++.
T Consensus 244 -~~~~~~~l~~~~L~~L~l~~n-~l~-~~~~-----------------~~~~~l~~L~~L~l~~n~-------------- 289 (606)
T 3t6q_A 244 -SPAVFEGLCEMSVESINLQKH-YFF-NISS-----------------NTFHCFSGLQELDLTATH-------------- 289 (606)
T ss_dssp -CGGGGGGGGGSEEEEEECTTC-CCS-SCCT-----------------TTTTTCTTCSEEECTTSC--------------
T ss_pred -ChhHhchhhcCceeEEEeecC-ccC-ccCH-----------------HHhccccCCCEEeccCCc--------------
Confidence 011111111 5667777663 444 2221 124455666666666654
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+. .+|..+..+++|+.+++++|.+.. .....+..+
T Consensus 290 -------------l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l------------------------------ 324 (606)
T 3t6q_A 290 -------------LS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNF------------------------------ 324 (606)
T ss_dssp -------------CS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGC------------------------------
T ss_pred -------------cC-CCChhhcccccCCEEECccCCcCc-Cchhhhhcc------------------------------
Confidence 11 234445555555555555554421 111222333
Q ss_pred hcccccceEEEecCCCCCCccc-cccCCCCcceeeeccCCCcccC--C-CCcCCCCCCeEEEecCCCCcccChhhhcCCC
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQ-SSLSLSSLREIVIYKCSSLVSF--P-EVALPSKLKKINIWHCDALKSLPEAWMCDTN 604 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 604 (959)
++|++|++++|...+.+|. .+..+++|++|++++|...... + .+..+++|++|++++|......+..+ ..+
T Consensus 325 ---~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 399 (606)
T 3t6q_A 325 ---PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KEC 399 (606)
T ss_dssp ---TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTC
T ss_pred ---CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCC
Confidence 4455555555544433332 2455555555555555433221 1 24445555555555555444333333 455
Q ss_pred CCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCC
Q 002156 605 SSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684 (959)
Q Consensus 605 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 684 (959)
++|++|++++|......+.. ....+++|+.|++++|.--..
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~---------------------------------~~~~l~~L~~L~l~~n~l~~~------ 440 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQS---------------------------------PFQNLHLLKVLNLSHSLLDIS------ 440 (606)
T ss_dssp TTCSEEECTTCCEECCTTCC---------------------------------TTTTCTTCCEEECTTCCCBTT------
T ss_pred ccCCeEECCCCcCCCcccch---------------------------------hhhCcccCCEEECCCCccCCc------
Confidence 55666666554321111100 000112233333333211000
Q ss_pred cchhhhccccCCCCCCCceEeeccChhhHH---HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccc
Q 002156 685 LPATLESLEVGNLPPSLKSLGVFECSKLES---IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLV 761 (959)
Q Consensus 685 ~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~ 761 (959)
.+.. ++.+ ++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|....
T Consensus 441 ~~~~-----~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 441 SEQL-----FDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CTTT-----TTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CHHH-----HhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 0000 1122 5788888888877652 22568899999999999999988889999999999999999998888
Q ss_pred ccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCc
Q 002156 762 SFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 762 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
..|..+..+++| +|++++|++.+..|..+..+++|+.|++++|++....+
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 888889999999 99999999998888889999999999999999875544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=362.06 Aligned_cols=287 Identities=16% Similarity=0.075 Sum_probs=164.9
Q ss_pred ceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccccc
Q 002156 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 553 (959)
Q Consensus 474 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 553 (959)
.+|+.+++++|.+.. .....+..+++|+.|+++++ .++.+....+. .+++|++|++++|.+.+..|..+.
T Consensus 266 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYN-KINKIADEAFY--------GLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp SCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESC-CCCEECTTTTT--------TCSSCCEEEEESCCCSCCCSCSCS
T ss_pred CCccEEECCCCcccc-cChhhhhcCCCCCEEECCCC-cCCCCChHHhc--------CCCCCCEEECCCCCCCccCHHHhc
Confidence 455556666655432 22334455666666666653 44444332211 125677777777776666666677
Q ss_pred CCCCcceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCcc
Q 002156 554 SLSSLREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLK 631 (959)
Q Consensus 554 ~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 631 (959)
.+++|++|++++|.. ..++ .+..+++|++|++++|.... + ..+++|+.|++++|. +..++. ...+++
T Consensus 336 ~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~-i------~~~~~L~~L~l~~N~-l~~l~~--~~~~l~ 404 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTT-I------HFIPSIPDIFLSGNK-LVTLPK--INLTAN 404 (844)
T ss_dssp SCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCCSCC-C------SSCCSCSEEEEESCC-CCCCCC--CCTTCC
T ss_pred CCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCCCCc-c------cCCCCcchhccCCCC-cccccc--cccccc
Confidence 777777777777743 3333 24556777777777776432 2 235667777776643 223321 122333
Q ss_pred EEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChh
Q 002156 632 QLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSK 711 (959)
Q Consensus 632 ~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~ 711 (959)
.++++++ +++.++. +. .++.+ ++|++|++++|.+
T Consensus 405 ~L~ls~N-~l~~l~~---------------------------------------~~-----~~~~l-~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 405 LIHLSEN-RLENLDI---------------------------------------LY-----FLLRV-PHLQILILNQNRF 438 (844)
T ss_dssp EEECCSC-CCCSSTT---------------------------------------HH-----HHTTC-TTCCEEEEESCCC
T ss_pred eeecccC-ccccCch---------------------------------------hh-----hhhcC-CccceeeCCCCcc
Confidence 3333331 1111110 00 01122 4667777776665
Q ss_pred hHHHHH-hhcCCCCccEEeecccCCC-----cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcC
Q 002156 712 LESIAE-RLDNNTSLEIISIGSCGNL-----KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLE 785 (959)
Q Consensus 712 ~~~~~~-~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 785 (959)
.+..+. .+..+++|+.|++++|.+. +..+..+..+++|++|++++|......|..+..+++|++|++++|++.+
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 432221 2445677777777777664 2334556777888888888876555555566777888888888887766
Q ss_pred ccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 786 ALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 786 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+..+. ++|+.|++++|.+.+..|..+ ++|+.|++++|+..
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 5555554 678888888888877777543 46778888887644
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=356.96 Aligned_cols=106 Identities=18% Similarity=0.061 Sum_probs=72.1
Q ss_pred CCCceeEEEecCCCCccc-cccccccCcccEEeccCC-CCccc-chhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 87 KLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGT-HIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
-.++|++|+|++|.|+.+ |.+|.++++|++|+|++| .+..+ |..|+++++|++|+|++|......|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 346777777777777766 567777777888888777 34456 566777777888887775444444666777777788
Q ss_pred eecCCCCcccccccc--cccccCCceeceEE
Q 002156 164 HNNSNTDSLEEMPLG--IGKLTCLQTLCNFV 192 (959)
Q Consensus 164 L~l~~~~~~~~~p~~--i~~L~~L~~L~~~~ 192 (959)
|++++|.....+|.. ++++++|++|++..
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 877777733334443 67777777765433
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=343.08 Aligned_cols=271 Identities=18% Similarity=0.097 Sum_probs=176.1
Q ss_pred ccceEEEecC-CCCCCccccccCCCCcceeeeccCCCcccCCC-CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 533 RLEYLTLSGC-QGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 533 ~L~~L~L~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
.++.++++++ ...+..|..+..+++|++|++++|... .+|. +..+ +|++|++++|... .+|. ..+++|++|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEE
Confidence 4677777777 455566777888888888888888443 4553 3444 7888888888754 4443 355677777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.....++. ..+
T Consensus 331 ~l~~n~~~~~~~~------------------------------------~~~---------------------------- 346 (570)
T 2z63_A 331 TFTSNKGGNAFSE------------------------------------VDL---------------------------- 346 (570)
T ss_dssp EEESCBSCCBCCC------------------------------------CBC----------------------------
T ss_pred eCcCCcccccccc------------------------------------ccC----------------------------
Confidence 7776442111110 001
Q ss_pred ccccCCCCCCCceEeeccChhhHHH--HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESI--AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGG 767 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~ 767 (959)
++|++|++++|...... +..+..+++|++|++++|...+..+. +..+++|++|++++|......| ..+
T Consensus 347 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 347 --------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp --------TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred --------CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 45666666665544322 45566777888888877766554443 7778888888888876555444 356
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCC-CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL-PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
..+++|++|++++|.+.+..|..+.++++|+.|++++|.+. +.+|..+..+++|++|++++|......+ ..+..+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l 493 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSL 493 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh----hhhhcc
Confidence 67778888888888777777777777888888888888776 4577777777888888888775332111 234445
Q ss_pred CCccEEEEcccCCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCC
Q 002156 847 SSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
++|++|++++ +.+..+|+ .+..+++|++|++++|+.-...|
T Consensus 494 ~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 494 SSLQVLNMAS----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCS----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCEEeCCC----------------------CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 5555555554 35565554 57788888888888877554444
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=345.05 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=157.7
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|++|++++|.+. .+|..+..+ +|++|++++|... .+|. ..+++|++|++++|......+. ..+++|++|+
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEE
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc----ccCCCCCEEe
Confidence 45556666555543 355555555 6666666666433 4443 3556666777766665444332 3556666666
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|.. ..... .+.....+++|+.|++++|.-... +..
T Consensus 354 l~~n~l-~~~~~-------------------------------~~~~~~~~~~L~~L~l~~n~l~~~-------~~~--- 391 (570)
T 2z63_A 354 LSRNGL-SFKGC-------------------------------CSQSDFGTTSLKYLDLSFNGVITM-------SSN--- 391 (570)
T ss_dssp CCSSCC-BEEEE-------------------------------EEHHHHTCSCCCEEECCSCSEEEE-------EEE---
T ss_pred CcCCcc-Ccccc-------------------------------ccccccccCccCEEECCCCccccc-------ccc---
Confidence 666431 11100 000011122333333333321110 000
Q ss_pred cccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccc-cccCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNL-VSFPEGGLP 769 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~ 769 (959)
++.+ ++|++|++++|...+..+ ..+..+++|++|++++|...+..|..+..+++|++|++++|... ..+|..+..
T Consensus 392 --~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 392 --FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp --EETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred --cccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 1111 477777777777665544 45778888888888888887777888888888888888888665 357778888
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
+++|++|++++|++.+..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888888888888877788888888888888888888877777778888888888888864
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.6e-34 Score=331.88 Aligned_cols=210 Identities=19% Similarity=0.157 Sum_probs=155.1
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhhHhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..++|..+. ++|++|++++|.++.+ |..|.++++|++|+|++|+|..+| ..|+++++|++|++++|......|..|
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 456676654 7899999999999887 678999999999999999998875 678999999999999964433344459
Q ss_pred hcccccceeecCCCCcccc--cccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhcc
Q 002156 156 GNLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 233 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (959)
+++++|++|++++|. +.. +|..++++++|++|++..+... .......+
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~ 144 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDF 144 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTT
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhh
Confidence 999999999999998 664 4567899999999876554311 01111236
Q ss_pred CCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCC
Q 002156 234 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTAL 313 (959)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~ 313 (959)
.++++|++|++++|.... ..+..+..+++|++|+++++....+|.++.. .+++|++|++++|.+.+..
T Consensus 145 ~~l~~L~~L~L~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp TTCCEEEEEEEEETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCC
T ss_pred hcccccCeeeccCCcccc-----------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCcccccc
Confidence 677888888888887642 2335667778888889888887777766532 3788999999988876531
Q ss_pred ----CCCCCCCCcCeeEecCCC
Q 002156 314 ----PSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 314 ----~~l~~l~~L~~L~L~~~~ 331 (959)
+....+++|+.|+++++.
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCE
T ss_pred ccccchhhhhhcccceeccccc
Confidence 234556778888887753
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=322.34 Aligned_cols=255 Identities=17% Similarity=0.060 Sum_probs=184.0
Q ss_pred ccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc-----cCCCCcceeeeccCCC
Q 002156 494 LLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS-----LSLSSLREIVIYKCSS 568 (959)
Q Consensus 494 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~ 568 (959)
.+..+++|+.|+++++ .+........... . ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|..
T Consensus 215 ~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNI-ETTWNSFIRILQL---V--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp GGGGCTTCCEEEEEEE-EEEHHHHHHHHHH---H--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred hhccccchhhcccccc-ccCHHHHHHHHHH---h--hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 3456778888888774 2222111111111 0 12689999999999888888877 8889999999998865
Q ss_pred cccCCC--CcC---CCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCccc
Q 002156 569 LVSFPE--VAL---PSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRT 643 (959)
Q Consensus 569 l~~~~~--~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~ 643 (959)
.+|. +.. .++|+.|++++|........ ..+++|++|++++|..-...+ .
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~-----~--------------- 342 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP----SKISPFLHLDFSNNLLTDTVF-----E--------------- 342 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC----SSCCCCCEEECCSSCCCTTTT-----T---------------
T ss_pred --ecchhhhhcccccCceeEEEcCCCccccccch----hhCCcccEEEeECCccChhhh-----h---------------
Confidence 4442 111 15688888888875432210 356677777777643211000 0
Q ss_pred ccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcC
Q 002156 644 LTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDN 721 (959)
Q Consensus 644 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~ 721 (959)
.++.+ ++|++|++++|.+.+ .+|..++.
T Consensus 343 -------------------------------------------------~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 343 -------------------------------------------------NCGHL-TELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp -------------------------------------------------TCCCC-SSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred -------------------------------------------------hhccC-CCCCEEEccCCccCccccchHHHhh
Confidence 01112 588999999998775 67888999
Q ss_pred CCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcccee
Q 002156 722 NTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQEL 800 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 800 (959)
+++|++|++++|.+.+.+|. .+..+++|++|++++|...+.+|..+. ++|++|++++|++. .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 99999999999998885665 478899999999999987777766543 69999999999876 778878899999999
Q ss_pred eeccCCCCCCCccc-CCCCCCcceEEccCCchhhh
Q 002156 801 RIGRGVELPSLEEE-DGLPTNLQSLDIWGNIEIWK 834 (959)
Q Consensus 801 ~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~ 834 (959)
++++|.+. .+|.. +..+++|++|++++|+...+
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 99999998 56655 88899999999999986543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-34 Score=340.36 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=87.9
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccc----------------------------------
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL---------------------------------- 104 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---------------------------------- 104 (959)
.+++.|.+.++. +.+.+|++++++++|++|+|++|.+..-
T Consensus 81 ~~V~~L~L~~~~------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSC------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEecCcc------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 467777776643 3677888888888888888888854111
Q ss_pred ccccc-------------------ccCcccEEecc--CCCCcccchhhhccccccEEeccCcchhhh-------------
Q 002156 105 PDSIG-------------------DLRYLRYLNLS--GTHIRALPESVNKLYNLHTLLLEDCRELKK------------- 150 (959)
Q Consensus 105 p~~~~-------------------~l~~L~~L~L~--~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~------------- 150 (959)
|..+. ....++.+.+. +|+++.+|+.++++++|++|+|++|. +..
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccc
Confidence 11111 01112222222 45677788889999999999999865 544
Q ss_pred -----hhHhhh--cccccceeecCCCCcccccccccccccCCceece
Q 002156 151 -----LCADMG--NLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 151 -----lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
+|..++ ++++|++|++++|...+.+|..++++++|++|++
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 888888 9999999999998877788888888888888754
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-32 Score=320.52 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred eeEEEecCCCCccccccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCC
Q 002156 91 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNT 169 (959)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 169 (959)
..+.|++++.++.+|..+. ++|++|+|++|+++.+ |..++++++|++|++++|......|..|+++++|++|++++|
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3346788889999998765 7899999999999987 578999999999999996444444567999999999999999
Q ss_pred Ccccccccc-cccccCCcee
Q 002156 170 DSLEEMPLG-IGKLTCLQTL 188 (959)
Q Consensus 170 ~~~~~~p~~-i~~L~~L~~L 188 (959)
. +..+|.. |+++++|++|
T Consensus 85 ~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 85 H-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp C-CCSCCHHHHTTCTTCCEE
T ss_pred c-cCccCHHHhccCCCCcEE
Confidence 8 6665543 5444444443
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-33 Score=332.93 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=97.6
Q ss_pred CCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCC--------CCCccEEEecCCcCcCccccccC
Q 002156 721 NNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP--------CAKLMRLEIYGCERLEALPKGLH 792 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~ 792 (959)
.+++|++|++++|.+.+..+..+..+++|++|++++|... .+|..... +++|++|++++|.+. .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 3445555555555554322223344666666666666433 45543322 226777777777655 5555555
Q ss_pred --CCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh--hhhhccCCCCCCCccEEEEcccCCCcccccCCC
Q 002156 793 --NLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS--MIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPA 868 (959)
Q Consensus 793 --~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 868 (959)
.+++|+.|++++|.+.+ +|..+..+++|++|++++|+.+... ....+..+..+++|
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L------------------- 568 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL------------------- 568 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-------------------
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-------------------
Confidence 67777777777777765 6666666777777777554311000 00001122233333
Q ss_pred CCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCc----------cccceeeccCChhHH
Q 002156 869 SLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLP----------SSLLRLWIEGCPLIE 929 (959)
Q Consensus 869 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~----------~~L~~L~l~~c~~l~ 929 (959)
+.|++++ +.++.+|..+. ++|++|++++|+.. .+...++. ...+..++++|+.++
T Consensus 569 --~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 569 --TQLQIGS-NDIRKVNEKIT--PNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp --CEEECCS-SCCCBCCSCCC--TTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred --CEEECCC-CcCCccCHhHh--CcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 3344444 35577887655 78999999987543 33322221 122445677888653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.5e-33 Score=331.45 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCcccchhhhccccccEEeccCcchhh-----------------hhhHhhh--cccccceeecCCCCcccccccccccc
Q 002156 122 THIRALPESVNKLYNLHTLLLEDCRELK-----------------KLCADMG--NLIKLHHHNNSNTDSLEEMPLGIGKL 182 (959)
Q Consensus 122 n~i~~lp~~i~~L~~L~~L~L~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 182 (959)
|+++.+|..++++++|++|+|++|.... .+|..++ ++++|++|++++|...+.+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666688888999999999998865433 2888877 89999999998888778888888888
Q ss_pred cCCceece
Q 002156 183 TCLQTLCN 190 (959)
Q Consensus 183 ~~L~~L~~ 190 (959)
++|++|++
T Consensus 515 ~~L~~L~L 522 (876)
T 4ecn_A 515 PELQSLNI 522 (876)
T ss_dssp SSCCEEEC
T ss_pred CCCCEEEC
Confidence 88888754
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-32 Score=328.03 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=118.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
++++.+++++|......+..+..+++|++|++++|...+ ..|..+..+++|++|+|++|...+..|..+..+++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 578888888888887778888899999999999987655 4688899999999999999977666778888999999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCchhh
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNIEIW 833 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 833 (959)
|++|++.+..|..++++++|++|++++|++.+..|..+..+ ++|++|++++|+...
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999888888889999999999999999999888888877 689999999998654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=317.30 Aligned_cols=450 Identities=16% Similarity=0.118 Sum_probs=238.5
Q ss_pred ccccccCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhhh
Q 002156 79 YSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMG 156 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (959)
..+|..+. ++|++|++++|.++.++ ..|.++++|++|+|++|+|+.+ |..|+++++|++|++++| .+..+|..
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 34554444 56666666666666553 4566666666666666666655 556666666666666663 45556554
Q ss_pred cccccceeecCCCCcccc--cccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccC
Q 002156 157 NLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234 (959)
Q Consensus 157 ~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (959)
.+++|++|++++|. +.. +|..++++++|++|++..
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~------------------------------------------ 124 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLST------------------------------------------ 124 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEE------------------------------------------
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecC------------------------------------------
Confidence 56666666666666 443 344566666665554433
Q ss_pred CCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCc--ceEEEeccCC---CCCCccccCCCCC-CccEEEEecCC
Q 002156 235 GKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNL--EQFCIKGYEG---MKFPTWLGDSSFS-NLVTLKFKNCG 308 (959)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~ 308 (959)
|.+.. ..+..+++| ++|+++++.. ...|.++.. +. +...+++++|.
T Consensus 125 ------------n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 125 ------------THLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNK 176 (520)
T ss_dssp ------------SSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSS
T ss_pred ------------cccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCc
Confidence 22210 001112222 4444444433 233444322 22 23345556666
Q ss_pred CCCCCC--CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceec
Q 002156 309 MCTALP--SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELH 386 (959)
Q Consensus 309 ~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 386 (959)
+.+.++ .+..+++|+.|++++|..... +. .+.. .++ .++.+++|++|+
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~-----------~~~~-----~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNK-------------CS-----------YFLS-----ILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTT-------------TH-----------HHHH-----HHH-GGGGCTTCCEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccc-------------cc-----------eeec-----chh-hhccccchhhcc
Confidence 555444 455667777777766531000 00 0000 011 234566677777
Q ss_pred cccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCC
Q 002156 387 ILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPL 466 (959)
Q Consensus 387 l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (959)
+++| .+++..+.. +. .....++|+.|++++|. +.|.+
T Consensus 227 l~~~-~l~~~~~~~--------------~~-~~~~~~~L~~L~l~~n~---------------------------l~~~~ 263 (520)
T 2z7x_B 227 LNNI-ETTWNSFIR--------------IL-QLVWHTTVWYFSISNVK---------------------------LQGQL 263 (520)
T ss_dssp EEEE-EEEHHHHHH--------------HH-HHHHTSSCSEEEEEEEE---------------------------EESCC
T ss_pred cccc-ccCHHHHHH--------------HH-HHhhhCcccEEEeeccc---------------------------ccCcc
Confidence 7663 232110000 00 00013467777777665 55566
Q ss_pred CCCC-----CCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEec
Q 002156 467 KPQL-----PKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 467 ~~~~-----~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
|..+ .++++|+.++++.+.+ .++.......+. .++|+.|++++
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~---------------------------~~p~~~~~~~~~-----~~~L~~L~l~~ 311 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF---------------------------GFPQSYIYEIFS-----NMNIKNFTVSG 311 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC---------------------------CSCTHHHHHHHH-----TCCCSEEEEES
T ss_pred ccchhhcccccCceeEeccccccce---------------------------ecchhhhhcccc-----cCceeEEEcCC
Confidence 6666 6777777777765543 111111101000 04577777777
Q ss_pred CCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCc--ccChhhhcCCCCCccEEEEecCCCC
Q 002156 542 CQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALK--SLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 542 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
|.+.... ....+++|++|++++|.....+| .+..+++|++|++++|...+ .+|..+ ..+++|++|++++|...
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVS 387 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCB
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCC
Confidence 7764322 12578888888888886655444 46678888888888887654 333434 56777777777774321
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++.
T Consensus 388 ~~l~~--------------------------------------------------------------------------- 392 (520)
T 2z7x_B 388 YDEKK--------------------------------------------------------------------------- 392 (520)
T ss_dssp CCGGG---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
..+..+++|++|++++|.+.+.+|..+. ++|++|++++|. ++.+|..+..+++|++|++
T Consensus 393 ------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 393 ------------------GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp ------------------CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEEC
T ss_pred ------------------chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEEC
Confidence 0122334444444445554444444332 566666666663 3356655556666777777
Q ss_pred cCCcCcCcccc-ccCCCCccceeeeccCCCCCC
Q 002156 779 YGCERLEALPK-GLHNLTSLQELRIGRGVELPS 810 (959)
Q Consensus 779 ~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~ 810 (959)
++|++.. +|. .+..+++|++|++++|++...
T Consensus 452 ~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 7766553 333 366677777777777776644
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.5e-31 Score=318.80 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=104.5
Q ss_pred cccEEeccccCCCCCCcccccccc-cCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccch-hhhcccc
Q 002156 60 HLRTFLPVTLSNSSRGHLAYSILP-KLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALPE-SVNKLYN 136 (959)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~ 136 (959)
.++.|.+..+. ...+++ +|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|+|+.+|. .|+++++
T Consensus 53 ~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 68999988765 556664 6799999999999999999985 579999999999999999999974 5799999
Q ss_pred ccEEeccCcchhhhhhHh-hhcccccceeecCCCCcccc--cccccccccCCceeceEEe
Q 002156 137 LHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 137 L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~ 193 (959)
|++|++++| .+..+|.. |++|++|++|++++|. +.. +|..++.+++|++|++..+
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 999999995 56667654 8999999999999998 654 4566888999999865433
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.6e-30 Score=309.59 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=111.0
Q ss_pred CCCccccccccccCcccEEeccCCCCcc------------------cchhhh--ccccccEEeccCcchhhhhhHhhhcc
Q 002156 99 YHIFELPDSIGDLRYLRYLNLSGTHIRA------------------LPESVN--KLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 99 ~~i~~lp~~~~~l~~L~~L~L~~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
|.++.+|..|+++++|++|+|++|+++. +|+.++ ++++|++|+|++|.....+|..|++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444488899999999999999999998 899987 99999999999988888999999999
Q ss_pred cccceeecCCCC-ccc-cccccccccc-CCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCC
Q 002156 159 IKLHHHNNSNTD-SLE-EMPLGIGKLT-CLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDG 235 (959)
Q Consensus 159 ~~L~~L~l~~~~-~~~-~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (959)
++|++|++++|. ... .+|.++++++ . +..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~------------------------------------------------~~~ 546 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADD------------------------------------------------EDT 546 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHC------------------------------------------------TTT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhc------------------------------------------------ccc
Confidence 999999999997 333 5888787654 1 111
Q ss_pred CCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCc--cccCCCCCCccEEEEecCCCCCCC
Q 002156 236 KKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPT--WLGDSSFSNLVTLKFKNCGMCTAL 313 (959)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~~ 313 (959)
+++|++|++++|....+|. .+.. +++|+.|++++|.+. .+
T Consensus 547 -----------------------------------l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 547 -----------------------------------GPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp -----------------------------------TTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BC
T ss_pred -----------------------------------cCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cc
Confidence 2344444555555556666 5543 777777777777776 55
Q ss_pred CCCCCCCCcCeeEecCCC
Q 002156 314 PSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 314 ~~l~~l~~L~~L~L~~~~ 331 (959)
|.++.+++|+.|++++|.
T Consensus 589 p~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCCCTTSEESEEECCSSC
T ss_pred hhhcCCCcceEEECcCCc
Confidence 677777788888887764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-30 Score=302.66 Aligned_cols=222 Identities=16% Similarity=0.060 Sum_probs=155.9
Q ss_pred cccceEEEecCCCCCCccccc-----cCCCCcceeeeccCCCcccCCC-----CcCCCCCCeEEEecCCCCcccChhhhc
Q 002156 532 CRLEYLTLSGCQGLVKLPQSS-----LSLSSLREIVIYKCSSLVSFPE-----VALPSKLKKINIWHCDALKSLPEAWMC 601 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~ 601 (959)
++|++|++++|.+.+.+|..+ ..++.|+.+++..+.. .+|. ....++|++|++++|........
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---- 349 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCP---- 349 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCC----
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCc----
Confidence 589999999998887888766 5666666666666543 3331 00124577777777764322110
Q ss_pred CCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccc
Q 002156 602 DTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFS 681 (959)
Q Consensus 602 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 681 (959)
..+++|++|++++|..-...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~----------------------------------------------------------- 370 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF----------------------------------------------------------- 370 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-----------------------------------------------------------
T ss_pred cCCCCceEEECCCCccccchh-----------------------------------------------------------
Confidence 345566666666543111000
Q ss_pred cCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCccEEeecccCCCcccCc-cccCCCCcceeeccccc
Q 002156 682 KNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCG 758 (959)
Q Consensus 682 ~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 758 (959)
.. ++.+ ++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.
T Consensus 371 -----~~-----~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 371 -----QG-----CSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp -----TT-----CCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred -----hh-----hccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 00 1111 578888888887765 6678889999999999999988875554 47789999999999997
Q ss_pred cccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc-CCCCCCcceEEccCCchhh
Q 002156 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE-DGLPTNLQSLDIWGNIEIW 833 (959)
Q Consensus 759 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 833 (959)
..+.+|..+. ++|++|++++|++. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|+...
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 7666665443 68999999999865 67777779999999999999998 56655 8889999999999997554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=9.6e-31 Score=304.87 Aligned_cols=471 Identities=17% Similarity=0.083 Sum_probs=262.4
Q ss_pred cCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCccc-chhhhcc
Q 002156 57 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRAL-PESVNKL 134 (959)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L 134 (959)
.+...+++.+.++. ...+|..+. ++|++|++++|.++.+| .+|.++++|++|+|++|+|+.+ |..|+++
T Consensus 29 ~~~~~~~l~ls~~~-------L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRN-------LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSC-------CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCC-------CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 44445777666544 455666554 68888888888888774 5788888888888888888877 5678888
Q ss_pred ccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccc--cccccccCCceeceEEeccCCCCChhhhhhhhhccc
Q 002156 135 YNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMP--LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG 212 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (959)
++|++|++++| .+..+|.. .+++|++|++++|. +..+| ..++++++|++|++..+.... ..
T Consensus 100 ~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~------------ 162 (562)
T 3a79_B 100 QDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD------------ 162 (562)
T ss_dssp TTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TT------------
T ss_pred CCCCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cc------------
Confidence 88888888884 56677766 78888888888887 66654 457777777777543322110 00
Q ss_pred ceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcccc
Q 002156 213 ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292 (959)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 292 (959)
...+..+ +|+.|++++|.... ....|.++.
T Consensus 163 -----------------~~~l~~L-~L~~L~L~~n~l~~--------------------------------~~~~~~~l~ 192 (562)
T 3a79_B 163 -----------------LLPVAHL-HLSCILLDLVSYHI--------------------------------KGGETESLQ 192 (562)
T ss_dssp -----------------TGGGTTS-CEEEEEEEESSCCC--------------------------------CSSSCCEEE
T ss_pred -----------------hhhhhhc-eeeEEEeecccccc--------------------------------cccCccccc
Confidence 0001111 22444444433200 011233322
Q ss_pred CCCCCCccEEEEecCCCCCCCC--CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 293 DSSFSNLVTLKFKNCGMCTALP--SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 293 ~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
.-....+ .+++++|.+...++ .+..+++|+.|+++++... +..+...
T Consensus 193 ~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--------------------------~~~l~~~---- 241 (562)
T 3a79_B 193 IPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN--------------------------CQRLMTF---- 241 (562)
T ss_dssp ECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT--------------------------HHHHHHH----
T ss_pred ccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccc--------------------------cchHHHH----
Confidence 1001111 34555555544433 3445666666666654210 0000000
Q ss_pred CCCCccccccccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCc
Q 002156 371 SSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNS 450 (959)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 450 (959)
...+..+++|+.+++.++ .+.+.... .+. .....++|++|++++|.
T Consensus 242 --~~~l~~l~~L~~L~L~~~-~l~~~~~~--------------~~~-~~~~~~~L~~L~l~~n~---------------- 287 (562)
T 3a79_B 242 --LSELTRGPTLLNVTLQHI-ETTWKCSV--------------KLF-QFFWPRPVEYLNIYNLT---------------- 287 (562)
T ss_dssp --HHHHHSCSSCEEEEEEEE-EECHHHHH--------------HHH-HHHTTSSEEEEEEEEEE----------------
T ss_pred --HHHHhccCcceEEEecCC-cCcHHHHH--------------HHH-HhhhcccccEEEEeccE----------------
Confidence 001223445555555442 11100000 000 00112356666666655
Q ss_pred ceecccCCcceecCCCCCCC-----CCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHh
Q 002156 451 VVCRDASNQVFLVGPLKPQL-----PKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQ 525 (959)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~-----~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 525 (959)
+.|.+|..+ ++++.|+.+++..+.+ .++.........
T Consensus 288 -----------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~---------------------------~~p~~~~~~~~~ 329 (562)
T 3a79_B 288 -----------ITERIDREEFTYSETALKSLMIEHVKNQVF---------------------------LFSKEALYSVFA 329 (562)
T ss_dssp -----------ECSCCCCCCCCCCSCSCCEEEEEEEEECCC---------------------------SSCHHHHHHHHH
T ss_pred -----------eeccccchhhhcccccchheehhhccccee---------------------------ecChhhhhhhhc
Confidence 445555554 6666666666654432 111111111100
Q ss_pred hhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcc--cChhhhcC
Q 002156 526 QLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKS--LPEAWMCD 602 (959)
Q Consensus 526 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 602 (959)
.++|++|++++|.+.... ....+++|++|++++|.....+| .+..+++|++|++++|...+. ++..+ .
T Consensus 330 -----~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~ 400 (562)
T 3a79_B 330 -----EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--K 400 (562)
T ss_dssp -----TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--T
T ss_pred -----cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh--c
Confidence 046888888887764321 12578888888888886665444 466788888888888875432 22223 5
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 603 TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
.+++|++|++++|.....++.
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~----------------------------------------------------------- 421 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYD----------------------------------------------------------- 421 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSS-----------------------------------------------------------
T ss_pred CCCCCCEEECCCCcCCCccCh-----------------------------------------------------------
Confidence 667777777776431110110
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS 762 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~ 762 (959)
..+..+++|++|++++|.+.+.+|..+. ++|++|++++| .++.
T Consensus 422 ----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 422 ----------------------------------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp ----------------------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC
T ss_pred ----------------------------------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc
Confidence 0123344555555556665555554432 67888888887 4556
Q ss_pred cCCCCCCCCCccEEEecCCcCcCccccc-cCCCCccceeeeccCCCCCCCc
Q 002156 763 FPEGGLPCAKLMRLEIYGCERLEALPKG-LHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 763 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
+|..+..+++|++|++++|++.. +|.. +..+++|+.|++++|++....+
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77766678888888888888764 4444 7888888888888888775544
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=6.1e-30 Score=286.94 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCc-ccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIR-ALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
+.++|++|++++|.++.+|++|+++++|++|++++|++. .+|.+++++.+|+++++++|.. .++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 457788888888888888888888888888888888776 6788888888888777777531 5678888
Q ss_pred cCCCCccccccc
Q 002156 166 NSNTDSLEEMPL 177 (959)
Q Consensus 166 l~~~~~~~~~p~ 177 (959)
+++|. ++.+|.
T Consensus 78 l~~~~-l~~lp~ 88 (454)
T 1jl5_A 78 LNNLG-LSSLPE 88 (454)
T ss_dssp CTTSC-CSCCCS
T ss_pred ecCCc-cccCCC
Confidence 88887 666654
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.3e-28 Score=270.55 Aligned_cols=368 Identities=22% Similarity=0.218 Sum_probs=217.2
Q ss_pred ecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEec
Q 002156 462 LVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 462 ~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
+.|.+|..++++.+|+.+++..+. ...+++|++++| .++.++. .+++|++|++++
T Consensus 46 ~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~L~l~~~-~l~~lp~------------~~~~L~~L~l~~ 100 (454)
T 1jl5_A 46 WERNAPPGNGEQREMAVSRLRDCL------------DRQAHELELNNL-GLSSLPE------------LPPHLESLVASC 100 (454)
T ss_dssp HHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSEEECTTS-CCSCCCS------------CCTTCSEEECCS
T ss_pred ccccCCcccccchhcchhhhhhhh------------ccCCCEEEecCC-ccccCCC------------CcCCCCEEEccC
Confidence 445566666666666555443321 145666777764 3554432 126778888877
Q ss_pred CCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccc
Q 002156 542 CQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYF 621 (959)
Q Consensus 542 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 621 (959)
|.+.+ +|.. +++|++|++++|. ++.++.. +++|++|++++|...+ +| .+ ..+++|++|++++|. ++.+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~L~~L~L~~n~l~~-lp-~~--~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNN-LKALSDL--PPLLEYLGVSNNQLEK-LP-EL--QNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSC-CSCCCSC--CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSC-CSCC
T ss_pred CcCCc-cccc---cCCCcEEECCCCc-cCcccCC--CCCCCEEECcCCCCCC-Cc-cc--CCCCCCCEEECCCCc-Cccc
Confidence 77765 5542 4678888887773 3344432 3678888888876544 55 33 677888888888764 4444
Q ss_pred cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCC
Q 002156 622 GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSL 701 (959)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L 701 (959)
+. .+.+|+.|+++++ +++.++ ....+++|+.|++++|.-- .+| ..|++|
T Consensus 169 p~--~~~~L~~L~L~~n-~l~~l~------------~~~~l~~L~~L~l~~N~l~-------~l~---------~~~~~L 217 (454)
T 1jl5_A 169 PD--LPPSLEFIAAGNN-QLEELP------------ELQNLPFLTAIYADNNSLK-------KLP---------DLPLSL 217 (454)
T ss_dssp CC--CCTTCCEEECCSS-CCSSCC------------CCTTCTTCCEEECCSSCCS-------SCC---------CCCTTC
T ss_pred CC--CcccccEEECcCC-cCCcCc------------cccCCCCCCEEECCCCcCC-------cCC---------CCcCcc
Confidence 42 3356777777665 343333 2345677888888775321 111 223688
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGC 781 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 781 (959)
++|++++|... .+| .++.+++|++|++++|.+.+ +|.. +++|++|++++|. +..+|.. .++|++|++++|
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 99999988766 556 48889999999998887664 4442 4789999999885 4446653 368999999999
Q ss_pred cCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCc
Q 002156 782 ERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDM 861 (959)
Q Consensus 782 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 861 (959)
.+.+ +|.. .++|+.|++++|.+.+ ++. ..++|++|++++|.... ....+++|++|++++|....
T Consensus 288 ~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~--------lp~~~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 288 IFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE--------LPALPPRLERLIASFNHLAE 351 (454)
T ss_dssp CCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC--------CCCCCTTCCEEECCSSCCSC
T ss_pred ccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc--------ccccCCcCCEEECCCCcccc
Confidence 8665 2211 2688899999988774 221 23588999999886432 11236889999998876554
Q ss_pred ccccCCCCCceEeeccCCCCc--ccccccCCC-------------CCCcEEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 862 VSFPLPASLTSLEISFFPNLE--RLSSSIVDL-------------QILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 862 ~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l-------------~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
... .+++|+.|++++|.... .+|.++..+ ++|++|++++|+ ++.+|. +|++++.|.+.+|.
T Consensus 352 lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 352 VPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp CCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------------------
T ss_pred ccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc--chhhHhheeCcCcc
Confidence 444 67889999999865444 567777766 889999999865 555544 67889999988875
Q ss_pred h
Q 002156 927 L 927 (959)
Q Consensus 927 ~ 927 (959)
.
T Consensus 428 ~ 428 (454)
T 1jl5_A 428 V 428 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.3e-27 Score=266.26 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=79.2
Q ss_pred cccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccc
Q 002156 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLI 159 (959)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 159 (959)
..+..+.++++|++|++++|.++.+| .++.+++|++|+|++|+++.+| ++.+++|++|++++| .+..+| +++++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~ 106 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT 106 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred ccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence 34456678889999999999888887 6888999999999999988886 888899999999885 466665 88888
Q ss_pred ccceeecCCCCcccccccccccccCCcee
Q 002156 160 KLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 160 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+|++|++++|. ++.+| ++++++|++|
T Consensus 107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TCCEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred cCCEEECCCCc-CCeec--CCCCCcCCEE
Confidence 89999998887 66654 5556555555
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.8e-27 Score=267.70 Aligned_cols=378 Identities=13% Similarity=0.072 Sum_probs=200.9
Q ss_pred eeccccCccccCCCCCCCCCccEEEEeccCCcc---cccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcc
Q 002156 384 ELHILRCSKLKGTFPEHLPALEMLVIEGCEELS---VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQV 460 (959)
Q Consensus 384 ~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 460 (959)
.++.++ ..++ .+|...++|++|++++|.... ..+..+++|+.|+++++..
T Consensus 14 ~~~c~~-~~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~------------------------- 66 (455)
T 3v47_A 14 NAICIN-RGLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP------------------------- 66 (455)
T ss_dssp EEECCS-SCCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-------------------------
T ss_pred ccCcCC-CCcc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-------------------------
Confidence 455555 3565 777755778888888875432 2456677777777777752
Q ss_pred eecCCC-CCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCccc-chhhhHHHHHhhhhhcccccceEE
Q 002156 461 FLVGPL-KPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQS-LVAEEEKDQQQQLCELSCRLEYLT 538 (959)
Q Consensus 461 ~~~~~~-~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~ 538 (959)
.+.+ +..|.++++|+.+++++|.+.. ..+..+..+++|++|++++| .++. ++... .....++|++|+
T Consensus 67 --~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~~~l~~L~~L~ 135 (455)
T 3v47_A 67 --GLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQC-NLDGAVLSGN-------FFKPLTSLEMLV 135 (455)
T ss_dssp --TCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEEECTTS-CCBTHHHHSS-------TTTTCTTCCEEE
T ss_pred --cceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEEeCCCC-CCCccccCcc-------cccCcccCCEEE
Confidence 2122 3346667777777777776532 22334456666777766664 2332 11110 001125666666
Q ss_pred EecCCCCCCcccc-ccCCCCcceeeeccCCCcccCCC-CcCC--CCCCeEEEecCCCCcccChhhh------cCCCCCcc
Q 002156 539 LSGCQGLVKLPQS-SLSLSSLREIVIYKCSSLVSFPE-VALP--SKLKKINIWHCDALKSLPEAWM------CDTNSSLE 608 (959)
Q Consensus 539 L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~------~~~l~~L~ 608 (959)
+++|.+.+..|.. +.++++|++|++++|......+. +..+ ++|+.|++++|......+..+. ...+++|+
T Consensus 136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp CCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred CCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceee
Confidence 6666665554543 55666666666666644333331 2221 4556666666654332211100 01334555
Q ss_pred EEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 609 ILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 609 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
+|++++|......+.. +. .....++|+.++++++......+....++..
T Consensus 216 ~L~Ls~n~l~~~~~~~-~~------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 216 TLDLSGNGFKESMAKR-FF------------------------------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EEECTTSCCCHHHHHH-HH------------------------------HHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred eEecCCCcccccchhh-hh------------------------------ccccccceeeEeeccccccccccchhhhccC
Confidence 5555554322211110 00 0001133444444443322211111111100
Q ss_pred hhccccCC-CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 689 LESLEVGN-LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 689 l~~~~~~~-lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
. ...+.. -+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|......|..+
T Consensus 265 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 265 D-NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp C-TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred c-ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 0 000000 01466777777766666666666667777777777766666666666667777777777665544445555
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 6666777777777766666566666677777777777766654444556666777777776653
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.2e-26 Score=256.67 Aligned_cols=364 Identities=13% Similarity=0.051 Sum_probs=236.3
Q ss_pred ceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccccc
Q 002156 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 553 (959)
Q Consensus 474 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 553 (959)
++|+.+++++|.+.. .....+..+++|++|+++++.-...++...+. -+++|++|++++|.+.+..|..++
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--------GLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--------TCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECccccc--------ccccCCEEeCCCCccCccChhhcc
Confidence 678888899888743 33455678889999999886543344333221 127889999999888777788888
Q ss_pred CCCCcceeeeccCCCcccCC-C--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCc
Q 002156 554 SLSSLREIVIYKCSSLVSFP-E--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSL 630 (959)
Q Consensus 554 ~l~~L~~L~L~~~~~l~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 630 (959)
++++|++|++++|.....++ . +..+++|++|++++|...+..+..++ ..+++|++|++++|... .+....+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~l~--- 175 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFNKVK-SICEEDLL--- 175 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTCCBS-CCCTTTSG---
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCCccc-ccChhhhh---
Confidence 88999999998886544333 2 66788899999998887666665533 67888888888886422 21111100
Q ss_pred cEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccCh
Q 002156 631 KQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECS 710 (959)
Q Consensus 631 ~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~ 710 (959)
......|+.++++++.-.. .+...+.... .-.+... ++|++|++++|.
T Consensus 176 ----------------------------~l~~~~L~~L~l~~n~l~~--~~~~~~~~~~-~~~~~~~-~~L~~L~Ls~n~ 223 (455)
T 3v47_A 176 ----------------------------NFQGKHFTLLRLSSITLQD--MNEYWLGWEK-CGNPFKN-TSITTLDLSGNG 223 (455)
T ss_dssp ----------------------------GGTTCEEEEEECTTCBCTT--CSTTCTTHHH-HCCTTTT-CEEEEEECTTSC
T ss_pred ----------------------------ccccccccccccccCcccc--cchhhccccc-ccccccc-ceeeeEecCCCc
Confidence 0001234444444432111 0000000000 0000111 578999999999
Q ss_pred hhHHHHHhhcCC---CCccEEeecccCCCcccC----------cccc--CCCCcceeeccccccccccCCCCCCCCCccE
Q 002156 711 KLESIAERLDNN---TSLEIISIGSCGNLKILP----------SGLH--NLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775 (959)
Q Consensus 711 ~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~p----------~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (959)
+.+..|..+... ++|+.|++++|...+... ..+. ..++|++|++++|.....+|..+..+++|++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 888888776554 899999999886554321 1111 2357888888888766666777777788888
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|++|++++|....... ..+..+++|++|+++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLKELALD 379 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh----hhccccccccEEECC
Confidence 8888888777777777788888888888887776667777777888888888875422111 334555556655555
Q ss_pred ccCCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCC
Q 002156 856 GCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 856 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
+ +.++.+|. .+..+++|++|++++|+.-...|
T Consensus 380 ~----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 T----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp S----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred C----------------------CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5 56777766 45788888888888877655554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.8e-25 Score=253.60 Aligned_cols=343 Identities=19% Similarity=0.264 Sum_probs=192.4
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeec
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNN 166 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (959)
.+++++.|+++++.++.+|. +..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 45667777777777776653 6677777777777777777655 777777777777774 4444544 777777777777
Q ss_pred CCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEEe
Q 002156 167 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 246 (959)
Q Consensus 167 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (959)
++|. ++.+|. ++++++|++|++..+.... . ..+..+++|++|++..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------------------------~-----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISD---------------------------I-----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECC---------------------------C-----GGGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCC---------------------------C-----hhhccCCcccEeecCC
Confidence 7776 666654 6666666666554332110 0 0134455555665542
Q ss_pred ccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeE
Q 002156 247 TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLT 326 (959)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ 326 (959)
... ....+..+++|++|+++++....++. +. .+++|++|++++|.+.+..+ ++.+++|++|+
T Consensus 166 -~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 166 -QVT-------------DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELS 227 (466)
T ss_dssp -SCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred -ccc-------------CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEE
Confidence 111 01123445555555555555444432 21 24555555555554433222 34444455555
Q ss_pred ecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceeccccCccccCCCCCCCCCccE
Q 002156 327 VRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEM 406 (959)
Q Consensus 327 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~ 406 (959)
+++|.... . .....+++|++|++++| .++ .++
T Consensus 228 l~~n~l~~-------------------------------------~-~~l~~l~~L~~L~l~~n-~l~-~~~-------- 259 (466)
T 1o6v_A 228 LNGNQLKD-------------------------------------I-GTLASLTNLTDLDLANN-QIS-NLA-------- 259 (466)
T ss_dssp CCSSCCCC-------------------------------------C-GGGGGCTTCSEEECCSS-CCC-CCG--------
T ss_pred CCCCCccc-------------------------------------c-hhhhcCCCCCEEECCCC-ccc-cch--------
Confidence 44432100 0 01234555666666553 232 111
Q ss_pred EEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCCCCCCCCcceEEEeccCcccc
Q 002156 407 LVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTY 486 (959)
Q Consensus 407 L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~ 486 (959)
.+..+++|+.|++++|. +
T Consensus 260 -----------~~~~l~~L~~L~l~~n~---------------------------------------------------l 277 (466)
T 1o6v_A 260 -----------PLSGLTKLTELKLGANQ---------------------------------------------------I 277 (466)
T ss_dssp -----------GGTTCTTCSEEECCSSC---------------------------------------------------C
T ss_pred -----------hhhcCCCCCEEECCCCc---------------------------------------------------c
Confidence 13445556666665554 2
Q ss_pred cccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccC
Q 002156 487 IWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKC 566 (959)
Q Consensus 487 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 566 (959)
.... .+..+++|+.|++++| .++.++. ...+++|+.|++++|.+.+..| +..+++|++|++++|
T Consensus 278 ~~~~---~~~~l~~L~~L~L~~n-~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 278 SNIS---PLAGLTALTNLELNEN-QLEDISP----------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CCCG---GGTTCTTCSEEECCSS-CCSCCGG----------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred Cccc---cccCCCccCeEEcCCC-cccCchh----------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 1101 1344566666666653 3443332 0123778888888887766544 667888888888888
Q ss_pred CCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCC
Q 002156 567 SSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCH 616 (959)
Q Consensus 567 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 616 (959)
. ++.++.+..+++|+.|++++|+..+..| + ..+++|++|++++|+
T Consensus 342 ~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 K-VSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCEE
T ss_pred c-cCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCCc
Confidence 4 4445667777888888888887665554 2 677888888888754
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=6e-26 Score=254.70 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=150.7
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVN 132 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~ 132 (959)
..+.++++||.|.+.++. ...+| .+..+++|++|++++|.++.+| ++.+++|++|++++|+++.+| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~-------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS-------ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSC-------CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCCC-------cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 345678889999887754 33444 6788999999999999988885 888999999999999988885 88
Q ss_pred ccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhccc
Q 002156 133 KLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG 212 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (959)
++++|++|++++| .+..+| ++.+++|++|++++|. ++.+| ++++++|++|++..+......
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~------------- 164 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL------------- 164 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC-------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc-------------
Confidence 8999999999985 566665 8889999999999988 77764 778888888854322110000
Q ss_pred ceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcccc
Q 002156 213 ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292 (959)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 292 (959)
.+..+++|+.|++++|..+.. + +..+++|+.|+++++....++ +
T Consensus 165 -------------------~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N~l~~~~--l- 208 (457)
T 3bz5_A 165 -------------------DVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTNNITKLD--L- 208 (457)
T ss_dssp -------------------CCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSSCCSCCC--C-
T ss_pred -------------------ccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCCcCCeec--c-
Confidence 145566777777777665321 1 455677777777777766653 3
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCC
Q 002156 293 DSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 293 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 331 (959)
..+++|++|++++|.+.+ +| ++.+++|++|++++|.
T Consensus 209 -~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 209 -NQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp -TTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred -ccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc
Confidence 236777778887777765 34 6777777888777765
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2e-24 Score=244.97 Aligned_cols=193 Identities=20% Similarity=0.133 Sum_probs=131.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|...+..+ ++.+++|++|++++|...+. ..+..+++|++|++++|......+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 577777777776655443 66677888888877765543 346677888888888775443332 666778888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|+.|++++|....... +..+++|++|++++|.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCc
Confidence 8887665443 6777888888888887775433 6677788888888886432211 4567788888887764
Q ss_pred CCcc-cccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCC
Q 002156 859 DDMV-SFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 859 ~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
.... .+..+++|+.|++++| .+..+++ +..+++|++|++++|+ ++.+|.
T Consensus 343 l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 343 VSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred cCCchhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 4333 2335678888888886 4555554 8889999999999875 444443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=243.51 Aligned_cols=177 Identities=19% Similarity=0.149 Sum_probs=133.9
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.....+|.......+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 57888888888777666677888899999999988887777778888999999999998888888877777778999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...... +..+..+++|++|++++|.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC----TTTBTTCTTCCEEECCSSC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC----HHHhcCcccCCEEECCCCc
Confidence 999877555567888899999999999888777777888889999999988643322 1456677788888887754
Q ss_pred CCcccc---cCCCCCceEeeccCC
Q 002156 859 DDMVSF---PLPASLTSLEISFFP 879 (959)
Q Consensus 859 ~~~~~~---~~~~~L~~L~l~~~~ 879 (959)
...... ..+++|+.|++++|+
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CceeCHhHcCCCcccCEEEccCCC
Confidence 333221 233456666666543
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.1e-24 Score=230.68 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=58.2
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCc
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVA 576 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (959)
.+++|++|+++++ .+..++.- ..+++|++|++++|.+.+ ++. +..+++|++|++++| .++.++.+.
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~~----------~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n-~i~~~~~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQGI----------EYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTN-KITDISALQ 107 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred hcccccEEEEeCC-ccccchhh----------hhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCC-cccCchHHc
Confidence 4556666666653 33333210 112666667776665543 332 666677777777766 334455566
Q ss_pred CCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCc
Q 002156 577 LPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLT 619 (959)
Q Consensus 577 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 619 (959)
.+++|++|++++|.... ++. + ..+++|++|++++|..+.
T Consensus 108 ~l~~L~~L~l~~n~i~~-~~~-~--~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISD-ISP-L--ANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp TCTTCSEEECTTSCCCC-CGG-G--TTCTTCCEEECTTCTTCC
T ss_pred CCCcCCEEECcCCcccC-chh-h--ccCCceeEEECCCCCCcc
Confidence 66667777776666433 222 2 556666666666655443
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-23 Score=228.12 Aligned_cols=300 Identities=17% Similarity=0.102 Sum_probs=152.8
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|++|++++|.+.. ++ .+..+++|++|++++| .++.++.+..+++|++|++++|.... ++ .+ ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITD-IS-AL--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC-CG-GG--TTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCcccC-ch-HH--cCCCcCCEEE
Confidence 678888888877643 34 3677788888888887 34445556677778888888776433 33 22 6677777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|. +..++... .+++|+.|++++|.....+..
T Consensus 117 l~~n~-i~~~~~~~-----------------------------------~l~~L~~L~l~~n~~~~~~~~---------- 150 (347)
T 4fmz_A 117 LNEDN-ISDISPLA-----------------------------------NLTKMYSLNLGANHNLSDLSP---------- 150 (347)
T ss_dssp CTTSC-CCCCGGGT-----------------------------------TCTTCCEEECTTCTTCCCCGG----------
T ss_pred CcCCc-ccCchhhc-----------------------------------cCCceeEEECCCCCCcccccc----------
Confidence 77743 22221111 122333333333322221000
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
+..+ ++|++|++++|......+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.... ++. +..++
T Consensus 151 --~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~~~ 221 (347)
T 4fmz_A 151 --LSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP-VANMT 221 (347)
T ss_dssp --GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GGGCT
T ss_pred --hhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch-hhcCC
Confidence 0111 344555555444332221 4445555555555544333211 4445555555555543222 211 33444
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|.
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~--------------------- 276 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQ--------------------- 276 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC---------------------
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hHhcCCCcCEEEccCCc---------------------
Confidence 55555555554433222 4445555555555554442 22 34444455555554443
Q ss_pred EEEcccCCCccc-ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 852 LEIRGCDDDMVS-FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 852 L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
..... +..+++|+.|++++|......|..+..+++|++|++++|+ ++.++...-.++|++|++++|+
T Consensus 277 -------l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 277 -------ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp -------CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred -------cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 22221 2244566666666654333444567777788888888765 4444433335677777777775
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=240.64 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=136.4
Q ss_pred CCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCc
Q 002156 469 QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKL 548 (959)
Q Consensus 469 ~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 548 (959)
.|.++++|+.+++++|.+.. ..+..+..+++|++|+++++ .++.++...+. -+++|++|++++|.+.+..
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT--------GLSNLTKLDISENKIVILL 120 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS-CCCSCCTTSST--------TCTTCCEEECTTSCCCEEC
T ss_pred HccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCC-cCCccCccccc--------CCCCCCEEECCCCccccCC
Confidence 34444444444444444321 12223344555555555542 34433332111 1156677777777666666
Q ss_pred cccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCC
Q 002156 549 PQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP 627 (959)
Q Consensus 549 ~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 627 (959)
+..+..+++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|+.|++++|.. ..++..
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i-~~~~~~--- 194 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNI-NAIRDY--- 194 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCC-CEECTT---
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcC-cEeChh---
Confidence 6667777777777777775443333 35566777777777776443332223 5667777777776432 111110
Q ss_pred CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeec
Q 002156 628 RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707 (959)
Q Consensus 628 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~ 707 (959)
.+..++ +|++|+++
T Consensus 195 ------------------------------~~~~l~------------------------------------~L~~L~l~ 208 (477)
T 2id5_A 195 ------------------------------SFKRLY------------------------------------RLKVLEIS 208 (477)
T ss_dssp ------------------------------CSCSCT------------------------------------TCCEEEEE
T ss_pred ------------------------------hcccCc------------------------------------ccceeeCC
Confidence 001112 33333333
Q ss_pred cChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcc
Q 002156 708 ECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEAL 787 (959)
Q Consensus 708 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 787 (959)
+|...+.++.......+|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 33333322222233334444444444433322234445555555555555433333334444555555555555555444
Q ss_pred ccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 788 PKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 788 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
|..+.++++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 55555555555555555555544444445555555555555543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4.3e-24 Score=236.60 Aligned_cols=301 Identities=17% Similarity=0.122 Sum_probs=215.7
Q ss_pred ccCCcccEEeccccCCCCCCcccccccccC-CCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccc-hhhh
Q 002156 56 YDIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVN 132 (959)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~ 132 (959)
..++++|.|.+.++. ...+|+.+ ..+++|++|++++|.++.++ ..|..+++|++|+|++|.+..+| ..++
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 356889999887754 56777775 88999999999999998885 48999999999999999999884 5589
Q ss_pred ccccccEEeccCcchhhhhhHh-hhcccccceeecCCCCccccccc-ccccccCCceeceEEeccCCCCChhhhhhhhhc
Q 002156 133 KLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 210 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 210 (959)
++++|++|++++| .+..+|.. ++++++|++|++++|. +..++. .++++++|++|++..+.....
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC------------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc------------
Confidence 9999999999985 67788776 5899999999999998 777654 488999999986543321110
Q ss_pred ccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcc
Q 002156 211 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTW 290 (959)
Q Consensus 211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~ 290 (959)
.+..+++|+.|++++|... .+...+.|++|+++++....+|..
T Consensus 181 ---------------------~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 181 ---------------------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp ---------------------CGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECC
T ss_pred ---------------------ccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeecccc
Confidence 0233456666666655442 222345677777777776666543
Q ss_pred ccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 291 LGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 291 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
. +++|+.|++++|.+.+ .+.++.+++|++|++++|.........+.+ +++|++|++.++.- ..
T Consensus 224 ~----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l-~~----- 286 (390)
T 3o6n_A 224 V----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNRL-VA----- 286 (390)
T ss_dssp C----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSCC-CE-----
T ss_pred c----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCcC-cc-----
Confidence 3 5677788888777654 356677778888888777544443433322 67777777777532 22
Q ss_pred CCCCccccccccceeccccCccccCCCCC---CCCCccEEEEeccCCcccccCCCCCccEEEecCCC
Q 002156 371 SSQGVVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCK 434 (959)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 434 (959)
++.....+++|++|++++| .++ .+|. .+++|++|++++|+.....+..+++|+.|++++++
T Consensus 287 -~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 287 -LNLYGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp -EECSSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred -cCcccCCCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 1223356788888888885 565 5553 45788888888887666667788999999999887
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.5e-23 Score=230.48 Aligned_cols=311 Identities=17% Similarity=0.148 Sum_probs=231.9
Q ss_pred CcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccc
Q 002156 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQS 551 (959)
Q Consensus 472 ~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 551 (959)
.+.+++.++++++.+. ..+...+..+++|++|+++++ .++.++...+. .+++|++|++++|.+.+..|..
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCC-cccccChhhcc--------CCCCcCEEECCCCCCCcCCHHH
Confidence 3567777778777653 345556788999999999985 56666554332 2389999999999988777778
Q ss_pred ccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCC
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS 629 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 629 (959)
++.+++|++|++++|.. +.+|. +..+++|++|++++|......+..+ ..+++|++|++++|. ++.++. ...++
T Consensus 113 ~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~-~~l~~ 187 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVDL-SLIPS 187 (390)
T ss_dssp TTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSC-CSBCCG-GGCTT
T ss_pred hcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCc-CCcccc-ccccc
Confidence 89999999999999954 45553 4678999999999998766555545 788999999999865 333322 33456
Q ss_pred ccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccC
Q 002156 630 LKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709 (959)
Q Consensus 630 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~ 709 (959)
++.+++.++ .+..++ ..+.|+.|+++++.--. .+ +..+++|+.|++++|
T Consensus 188 L~~L~l~~n-~l~~~~---------------~~~~L~~L~l~~n~l~~--~~-------------~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 188 LFHANVSYN-LLSTLA---------------IPIAVEELDASHNSINV--VR-------------GPVNVELTILKLQHN 236 (390)
T ss_dssp CSEEECCSS-CCSEEE---------------CCSSCSEEECCSSCCCE--EE-------------CCCCSSCCEEECCSS
T ss_pred cceeecccc-cccccC---------------CCCcceEEECCCCeeee--cc-------------ccccccccEEECCCC
Confidence 777776664 233222 12468888888754321 11 112368999999998
Q ss_pred hhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccc
Q 002156 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPK 789 (959)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 789 (959)
...+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|. ++.+|..+..+++|++|++++|++. .+|.
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCc
Confidence 87653 568889999999999998888888889999999999999984 5557777778899999999999865 5666
Q ss_pred ccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh
Q 002156 790 GLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 790 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
.+..+++|+.|++++|.+... + +..+++|+.|++++|+.....
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 778889999999999988743 3 667889999999999865543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.5e-23 Score=241.20 Aligned_cols=311 Identities=17% Similarity=0.147 Sum_probs=238.1
Q ss_pred CcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccc
Q 002156 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQS 551 (959)
Q Consensus 472 ~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 551 (959)
.+.++++++++++.+. ..+...+..+++|+.|+++++ .++.++...+. .+++|++|++++|.+.+..|..
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCC-CCCCCChHHhc--------CCCCCCEEECCCCcCCCCCHHH
Confidence 3566777888877663 355566788999999999985 57666554332 2389999999999988877778
Q ss_pred ccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCC
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS 629 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 629 (959)
++++++|++|++++|... .+|. +..+++|++|++++|......+..+ ..+++|++|++++|. ++.++. ...++
T Consensus 119 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~-~~l~~ 193 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVDL-SLIPS 193 (597)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSC-CSBCCG-GGCTT
T ss_pred HcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCC-CCCcCh-hhhhh
Confidence 899999999999999544 5553 4678999999999998766666555 788999999999964 333332 33456
Q ss_pred ccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccC
Q 002156 630 LKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709 (959)
Q Consensus 630 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~ 709 (959)
|+.++++++ .+..++ ..+.|+.|+++++.--. ++ +..+++|+.|++++|
T Consensus 194 L~~L~l~~n-~l~~l~---------------~~~~L~~L~ls~n~l~~-------~~--------~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 194 LFHANVSYN-LLSTLA---------------IPIAVEELDASHNSINV-------VR--------GPVNVELTILKLQHN 242 (597)
T ss_dssp CSEEECCSS-CCSEEE---------------CCTTCSEEECCSSCCCE-------EE--------CSCCSCCCEEECCSS
T ss_pred hhhhhcccC-cccccc---------------CCchhheeeccCCcccc-------cc--------cccCCCCCEEECCCC
Confidence 777776664 232222 12468888888864221 11 223368999999999
Q ss_pred hhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccc
Q 002156 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPK 789 (959)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 789 (959)
.+.+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|.
T Consensus 243 ~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 243 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCc
Confidence 8876 3678899999999999999988889999999999999999985 5557777788999999999999876 5677
Q ss_pred ccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh
Q 002156 790 GLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 790 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
.+..+++|+.|++++|.+.+. + +..+++|+.|++++|+.....
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 788899999999999998754 3 667899999999999865543
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.3e-22 Score=213.19 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=102.7
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+|++|++++|.+.+..+..+..+++|++|++++|.... ..+..+..+++|++|++++|. ++.+|.... ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEE
Confidence 44555555555444444555666666666666655532 345555666666666666663 334444332 5666666
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
+++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.... .+..+..+++|++|++++|
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCC
Confidence 66666555555566666666666666666665545455566666666666664321 1123445555555555554
Q ss_pred CCCccccc---------CCCCCceEeeccCCCCc--ccccccCCCCCCcEEecCCC
Q 002156 858 DDDMVSFP---------LPASLTSLEISFFPNLE--RLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 858 ~~~~~~~~---------~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c 902 (959)
........ ...+|+.|++++|+... ..|..+..+++++.+++++|
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 32222111 12445566666654321 22335666666666666654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.6e-23 Score=221.76 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=49.3
Q ss_pred cccceEEEecCCCCC--CccccccCCCCcceeeecc-CCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 532 CRLEYLTLSGCQGLV--KLPQSSLSLSSLREIVIYK-CSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.....+| .+..+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 467777777777776 6777777777777777774 54444444 34556666666666665544444443 344444
Q ss_pred cEEEEec
Q 002156 608 EILTISS 614 (959)
Q Consensus 608 ~~L~l~~ 614 (959)
++|++++
T Consensus 128 ~~L~Ls~ 134 (313)
T 1ogq_A 128 VTLDFSY 134 (313)
T ss_dssp CEEECCS
T ss_pred CEEeCCC
Confidence 4444444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.7e-22 Score=233.48 Aligned_cols=307 Identities=14% Similarity=0.025 Sum_probs=173.3
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCC-C
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE-V 575 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~ 575 (959)
.+.+++.+++++ +.+..++...+.. +++|++|++++|.+.+..|..++.+++|++|++++|......|. +
T Consensus 49 ~l~~l~~l~l~~-~~l~~lp~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKN-STMRKLPAALLDS--------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESS-CEESEECTHHHHH--------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeC-CCCCCcCHHHHcc--------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 356778888877 4566666543322 27888888888887766666788888888888888854443332 4
Q ss_pred cCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCC
Q 002156 576 ALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSS 655 (959)
Q Consensus 576 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 655 (959)
..+++|++|++++|... .+|...+ ..+++|++|++++|.. ..++..
T Consensus 120 ~~l~~L~~L~L~~n~l~-~l~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~------------------------------- 165 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLS-SLPRGIF-HNTPKLTTLSMSNNNL-ERIEDD------------------------------- 165 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTT-TTCTTCCEEECCSSCC-CBCCTT-------------------------------
T ss_pred cCCCCCCEEEeeCCCCC-CCCHHHh-ccCCCCCEEEeeCCcC-CCCChh-------------------------------
Confidence 66788888888888654 4444322 5677788887777532 211110
Q ss_pred CcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCC
Q 002156 656 SSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGN 735 (959)
Q Consensus 656 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 735 (959)
.+..+ ++|++|++++|.+.+. .++.+++|+.|++++|.+
T Consensus 166 --~~~~l------------------------------------~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 166 --TFQAT------------------------------------TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp --TTTTC------------------------------------TTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred --hhhcC------------------------------------CcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 00011 3444555544443322 134456666666666544
Q ss_pred CcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccC
Q 002156 736 LKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED 815 (959)
Q Consensus 736 ~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 815 (959)
.+ +...++|++|++++|.. ..++... .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 32 22345667777776643 3333322 2467777777776654 2456667777777777777776666667
Q ss_pred CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCc
Q 002156 816 GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILT 895 (959)
Q Consensus 816 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 895 (959)
+.+++|+.|++++|..... +..+..+++|+.|++++| .+..+|..+..+++|+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N----------------------~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHN----------------------HLLHVERNQPQFDRLE 327 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSS----------------------CCCCCGGGHHHHTTCS
T ss_pred cCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCC----------------------CCCccCcccccCCCCC
Confidence 7777777777777643221 122233445555555442 3444444444455555
Q ss_pred EEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 896 ELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 896 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
+|++++|. +..++... .++|+.|++++||
T Consensus 328 ~L~L~~N~-l~~~~~~~-~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNS-IVTLKLST-HHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSC-CCCCCCCT-TCCCSEEECCSSC
T ss_pred EEECCCCC-CCCcChhh-cCCCCEEEeeCCC
Confidence 55555533 33333221 2445555555544
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.2e-23 Score=221.11 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=113.6
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC-CccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA-KLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l 778 (959)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..++ +|++|++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 455555555555444555555666666666666665555666666666666666666655445565555555 6666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+.+|..+..++ |+.|++++|.+.+.+|..+..+++|+.|++++|....... .+..+++|++|
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L------ 249 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGL------ 249 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEE------
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEE------
Confidence 66666555666665554 6666666666666666666666666666666664321111 12223333333
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCChhH
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 928 (959)
++++|.....+|..+..+++|++|++++|..-..+|..+-.++|+.+++.+++.+
T Consensus 250 ---------------~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 250 ---------------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ---------------ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ---------------ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 3333322225555666666666666666654445555444456666666666543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=7.1e-22 Score=213.33 Aligned_cols=285 Identities=14% Similarity=0.087 Sum_probs=147.5
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++++.++++++.+. .+|..+ .++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEE
Confidence 35566666665543 445433 3566667776664332222 35556667777776666544444444 566777777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|. ++.++. .+.
T Consensus 108 ~L~~n~-l~~l~~-~~~--------------------------------------------------------------- 122 (332)
T 2ft3_A 108 YISKNH-LVEIPP-NLP--------------------------------------------------------------- 122 (332)
T ss_dssp ECCSSC-CCSCCS-SCC---------------------------------------------------------------
T ss_pred ECCCCc-CCccCc-ccc---------------------------------------------------------------
Confidence 776643 222221 011
Q ss_pred ccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC--cccCccccCCCCcceeeccccccccccCCCCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL--KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
++|++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+ +|++|++++|. ++.+|..+.
T Consensus 123 --------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~ 192 (332)
T 2ft3_A 123 --------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP 192 (332)
T ss_dssp --------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC
T ss_pred --------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc
Confidence 23444444444443333334555566666666665553 2344555555 66666666663 333544332
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.... .+..+..+++
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~ 265 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKL 265 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTT
T ss_pred --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-----cChhhhcCcc
Confidence 466666666666555555556666666666666666665555555566666666666664321 1122445555
Q ss_pred ccEEEEcccCCCccccc---------CCCCCceEeeccCCCC--cccccccCCCCCCcEEecCCCc
Q 002156 849 LRRLEIRGCDDDMVSFP---------LPASLTSLEISFFPNL--ERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 849 L~~L~l~~~~~~~~~~~---------~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
|++|++++|........ ...+|+.|++++|+.. ...|..+..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55555555432222111 1344666666665533 2334456667777777776654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.4e-22 Score=212.79 Aligned_cols=232 Identities=22% Similarity=0.259 Sum_probs=190.4
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
.++++.|++++|.+. .+|..+..+++|++|++++|... .+| .+..+++|++|++++|... .+|..+ ..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCE
Confidence 378999999999886 77888888999999999999655 666 4778999999999999866 777766 78899999
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|..+..++. .+....+.+ .
T Consensus 155 L~L~~n~~~~~~p~-----~~~~~~~~~--------------------------------------------------~- 178 (328)
T 4fcg_A 155 LSIRACPELTELPE-----PLASTDASG--------------------------------------------------E- 178 (328)
T ss_dssp EEEEEETTCCCCCS-----CSEEEC-CC--------------------------------------------------C-
T ss_pred EECCCCCCccccCh-----hHhhccchh--------------------------------------------------h-
Confidence 99999876654442 222210000 0
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
++.+ ++|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..
T Consensus 179 ----~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 179 ----HQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp ----EEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred ----hccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 0011 57888888888766 677788999999999999988775 6667899999999999999999999999999
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..++.+++|+.+++..+.
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.8e-21 Score=208.53 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=143.5
Q ss_pred cceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc
Q 002156 473 LEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS 552 (959)
Q Consensus 473 L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 552 (959)
..+++.++++++.+.. .+.. ..+.++.|+++++ .++.++...+. -+++|++|++++|.+.+..|..+
T Consensus 30 ~c~l~~l~~~~~~l~~-lp~~---~~~~l~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEK-VPKD---LPPDTALLDLQNN-KITEIKDGDFK--------NLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp EEETTEEECTTSCCCS-CCCS---CCTTCCEEECCSS-CCCCBCTTTTT--------TCTTCCEEECCSSCCCCBCTTTT
T ss_pred cCCCeEEEecCCCccc-cCcc---CCCCCeEEECCCC-cCCEeChhhhc--------cCCCCCEEECCCCcCCeeCHHHh
Confidence 3345556666554421 1111 1256777777763 45555443221 12677777777777766667677
Q ss_pred cCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccE
Q 002156 553 LSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQ 632 (959)
Q Consensus 553 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 632 (959)
..+++|++|++++|. ++.+|.. .+++|++|++++|......+..+ ..+++|++|++++|..-. .+
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~---------- 161 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKS-SG---------- 161 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCG-GG----------
T ss_pred cCCCCCCEEECCCCc-CCccChh-hcccccEEECCCCcccccCHhHh--cCCccccEEECCCCcCCc-cC----------
Confidence 777777777777774 3344432 23677777777776544433333 567777777777643211 00
Q ss_pred EEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhh
Q 002156 633 LDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKL 712 (959)
Q Consensus 633 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~ 712 (959)
..+.....+++|+.|+++++.-- .+|. .++++|++|++++|.+.
T Consensus 162 ---------------------~~~~~~~~l~~L~~L~l~~n~l~-------~l~~--------~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 162 ---------------------IENGAFQGMKKLSYIRIADTNIT-------TIPQ--------GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp ---------------------BCTTGGGGCTTCCEEECCSSCCC-------SCCS--------SCCTTCSEEECTTSCCC
T ss_pred ---------------------cChhhccCCCCcCEEECCCCccc-------cCCc--------cccccCCEEECCCCcCC
Confidence 00011122334444444443211 0110 01135555555555544
Q ss_pred HHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccC
Q 002156 713 ESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLH 792 (959)
Q Consensus 713 ~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 792 (959)
+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|++.+..+..+.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 4444455555555555555555444444445555555555555552 334454455555555555555554443333332
Q ss_pred C------CCccceeeeccCCCCC--CCcccCCCCCCcceEEccCC
Q 002156 793 N------LTSLQELRIGRGVELP--SLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 793 ~------l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n 829 (959)
. .++|+.|++++|++.. ..|..+..+.+++.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1 2444455555554431 23334444444444544444
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1e-21 Score=212.09 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=68.4
Q ss_pred eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccC
Q 002156 475 ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS 554 (959)
Q Consensus 475 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 554 (959)
.++.++++++.+.. .+... .++++.|+++++ .++.++...+. -+++|++|++++|.+.+..|..+..
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI---SPDTTLLDLQNN-DISELRKDDFK--------GLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC---CTTCCEEECCSS-CCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGSTT
T ss_pred cCCEEECCCCCccc-cCCCC---CCCCeEEECCCC-cCCccCHhHhh--------CCCCCcEEECCCCccCccCHhHhhC
Confidence 45556666555421 12111 256666776663 45544433221 1266777777777666555666667
Q ss_pred CCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCC
Q 002156 555 LSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCH 616 (959)
Q Consensus 555 l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 616 (959)
+++|++|++++|.. +.+|... .++|++|++++|......+..+ ..+++|++|++++|.
T Consensus 101 l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 101 LRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNP 158 (332)
T ss_dssp CTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCC
T ss_pred cCCCCEEECCCCcC-CccCccc-cccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCc
Confidence 77777777776633 3444322 2667777777766543333223 566666666666643
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.9e-23 Score=245.92 Aligned_cols=206 Identities=11% Similarity=0.037 Sum_probs=119.5
Q ss_pred CCCceEeeccChhhHH-HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccc----------cccccc--cCC
Q 002156 699 PSLKSLGVFECSKLES-IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWN----------CGNLVS--FPE 765 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~----------~~~l~~--~~~ 765 (959)
++|++|++++|..... ++..+..+++|++|+++++-..+.++..+..+++|++|++++ |..++. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 4677777777764433 334466777777777763322223344445567777777773 433331 222
Q ss_pred CCCCCCCccEEEecCCcCcCccccccCC-CCccceeeecc----CCCCCC-----CcccCCCCCCcceEEccCCch-hhh
Q 002156 766 GGLPCAKLMRLEIYGCERLEALPKGLHN-LTSLQELRIGR----GVELPS-----LEEEDGLPTNLQSLDIWGNIE-IWK 834 (959)
Q Consensus 766 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~----n~~~~~-----~~~~~~~~~~L~~L~l~~n~~-~~~ 834 (959)
....+++|++|+++.+.+.+..+..+.. +++|+.|++++ |.+.+. ++..+..+++|+.|++++|.. ++.
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 2234677777777666665555555543 77777777763 333321 222244577788888876542 222
Q ss_pred hhhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCcc--cccccCCCCCCcEEecCCCcCCCCC
Q 002156 835 SMIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLER--LSSSIVDLQILTELRLYHCRKLKYF 908 (959)
Q Consensus 835 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l 908 (959)
.... .....+++|++|++++|....... ..+++|+.|++++|+ ++. ++..+..+++|++|++++|+ ++..
T Consensus 453 ~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 453 LGLS--YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHH--HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHH--HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 1111 112346778888887765332221 245778888888877 443 45455678899999999987 5544
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=2.1e-24 Score=245.53 Aligned_cols=226 Identities=19% Similarity=0.064 Sum_probs=128.9
Q ss_pred CCCceEeeccChhhHHHHHhhc-----CCCCccEEeecccCCCcc----cCccccCCCCcceeeccccccccc----c-C
Q 002156 699 PSLKSLGVFECSKLESIAERLD-----NNTSLEIISIGSCGNLKI----LPSGLHNLCQLQEIEIWNCGNLVS----F-P 764 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~l~~----~-~ 764 (959)
++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|..... + +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 4667777776665544333332 355677777777665542 355556667777777777643221 1 1
Q ss_pred CCCCCCCCccEEEecCCcCcCc----cccccCCCCccceeeeccCCCCCCCcccC-----CCCCCcceEEccCCchhhhh
Q 002156 765 EGGLPCAKLMRLEIYGCERLEA----LPKGLHNLTSLQELRIGRGVELPSLEEED-----GLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 765 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~ 835 (959)
.....+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+ ...++|++|++++|......
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 1122456777777777765543 44555566777777777776543222111 12357777777777644332
Q ss_pred hhhhccCCCCCCCccEEEEcccCCCccccc--------CCCCCceEeeccCCCCc-----ccccccCCCCCCcEEecCCC
Q 002156 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSFP--------LPASLTSLEISFFPNLE-----RLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 836 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c 902 (959)
....+..+..+++|++|++++|........ ..++|+.|++++| .++ .+|..+..+++|++|++++|
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 222223344567777777777533222111 1457888888886 455 67878888999999999997
Q ss_pred cCCCCCCCC-------CCccccceeeccCCh
Q 002156 903 RKLKYFPKK-------GLPSSLLRLWIEGCP 926 (959)
Q Consensus 903 ~~l~~l~~~-------~~~~~L~~L~l~~c~ 926 (959)
+ ++..... ....+|+.|++.++.
T Consensus 409 ~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 409 C-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp S-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred C-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 5 3322110 012357777766553
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.4e-21 Score=209.61 Aligned_cols=191 Identities=21% Similarity=0.299 Sum_probs=147.5
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
....++++|+|++|.++.+|..+.++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|+
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 356889999999999999999999999999999999999999999999999999999995 5668999999999999999
Q ss_pred cCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEE
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (959)
+++|+..+.+|..++...-- ..+.++++|++|+++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDAS---------------------------------------------GEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-C---------------------------------------------CCEEESTTCCEEEEE
T ss_pred CCCCCCccccChhHhhccch---------------------------------------------hhhccCCCCCEEECc
Confidence 99987788888876642100 013345566777777
Q ss_pred eccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCe
Q 002156 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALP-SMGQLPSLKH 324 (959)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 324 (959)
+|.++.. +..+..+++|++|++++|....+|..+.. +++|++|++++|.+.+.+| .++.+++|++
T Consensus 192 ~n~l~~l------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 192 WTGIRSL------------PASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EECCCCC------------CGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCcCcc------------hHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 7665322 23345567777777777777777776644 7788888888887777666 6777888888
Q ss_pred eEecCCCCceEe
Q 002156 325 LTVRGMSRVKRL 336 (959)
Q Consensus 325 L~L~~~~~~~~~ 336 (959)
|++++|.....+
T Consensus 258 L~L~~n~~~~~~ 269 (328)
T 4fcg_A 258 LILKDCSNLLTL 269 (328)
T ss_dssp EECTTCTTCCBC
T ss_pred EECCCCCchhhc
Confidence 888877654443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.5e-20 Score=198.86 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=110.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
++|++|++++|...+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 477888888877776667778888888999998887766 5688888889999999998876666677788888999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCchhh
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNIEIW 833 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 833 (959)
+++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+ ++|++|++++|+...
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99998877766678888999999999999888888778777 489999999987543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=6e-22 Score=233.15 Aligned_cols=340 Identities=13% Similarity=0.010 Sum_probs=182.1
Q ss_pred cccceEEEecCCCCCC----ccccccCCCCcceeeeccCCCc----ccCCC-CcCCCCCCeEEEecCCCCcccChhhhcC
Q 002156 532 CRLEYLTLSGCQGLVK----LPQSSLSLSSLREIVIYKCSSL----VSFPE-VALPSKLKKINIWHCDALKSLPEAWMCD 602 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l----~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 602 (959)
++|++|++++|.+.+. ++.....+++|++|++++|... ..++. +..+++|++|++++|.... ++..+ .
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~--~ 240 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF--K 240 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH--H
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH--h
Confidence 6666666666654333 2333445666666666666432 11111 2345667777776665332 33333 4
Q ss_pred CCCCccEEEEecCCCCccc----cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccc
Q 002156 603 TNSSLEILTISSCHSLTYF----GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTC 678 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 678 (959)
.+++|++|+++++...... .....+++|+.+.+.++. . ...+.....+++|++|++++|. +..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-----------~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P-----------NEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T-----------TTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h-----------hHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 5667777777643221110 111222445555444321 1 1112223345678888887776 322
Q ss_pred ccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecc----------cCCCcc--cCccccCC
Q 002156 679 IFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGS----------CGNLKI--LPSGLHNL 746 (959)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~--~p~~~~~l 746 (959)
.. ++.. +..+ ++|++|+++++-....++.....+++|++|++++ |..++. ++.....+
T Consensus 308 ~~----~~~~-----~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 308 ED----HCTL-----IQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp HH----HHHH-----HTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred HH----HHHH-----HHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 10 0000 1222 5788888884444445566667788888888884 544442 23334557
Q ss_pred CCcceeeccccccccccCCCCC-CCCCccEEEecC----CcCcCc-----cccccCCCCccceeeeccCC--CCCCCccc
Q 002156 747 CQLQEIEIWNCGNLVSFPEGGL-PCAKLMRLEIYG----CERLEA-----LPKGLHNLTSLQELRIGRGV--ELPSLEEE 814 (959)
Q Consensus 747 ~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~----~~~~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~ 814 (959)
++|++|+++.+......+..+. .+++|++|++++ +.+.+. ++..+.++++|+.|++++|. +....+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 8888888865544333333333 367888888863 333321 22335567888888887654 33332222
Q ss_pred C-CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCccccc--c
Q 002156 815 D-GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLERLSS--S 887 (959)
Q Consensus 815 ~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~~--~ 887 (959)
+ ..+++|+.|++++|........ ..+.++++|++|++++|....... ..+++|+.|++++|. ++.... -
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l 533 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLM---EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM 533 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHH---HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGG
T ss_pred HHHhCccceEeeccCCCCCHHHHH---HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHH
Confidence 2 2467888888888864332222 234567888888888876321111 146788888888876 443211 2
Q ss_pred cCCCCCCcEEecCC
Q 002156 888 IVDLQILTELRLYH 901 (959)
Q Consensus 888 ~~~l~~L~~L~l~~ 901 (959)
...++.+....+..
T Consensus 534 ~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 QMARPYWNIELIPS 547 (592)
T ss_dssp GGCCTTEEEEEECC
T ss_pred HHhCCCcEEEEecC
Confidence 23456666555554
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=9.6e-23 Score=231.90 Aligned_cols=326 Identities=18% Similarity=0.099 Sum_probs=212.3
Q ss_pred cccceEEEecCCCCC----CccccccCCCCcceeeeccCCCcccCC-C-CcCCC----CCCeEEEecCCCCc----ccCh
Q 002156 532 CRLEYLTLSGCQGLV----KLPQSSLSLSSLREIVIYKCSSLVSFP-E-VALPS----KLKKINIWHCDALK----SLPE 597 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~~~-~-~~~~~----~L~~L~l~~~~~~~----~~~~ 597 (959)
++|++|++++|.+.. .++..+..+++|++|++++|......+ . ...++ +|++|++++|.... .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 667777777776543 345556667778888887775332111 1 11122 67778887776542 2344
Q ss_pred hhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccc
Q 002156 598 AWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLT 677 (959)
Q Consensus 598 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 677 (959)
.+ ..+++|++|++++|. ++.... ..
T Consensus 108 ~l--~~~~~L~~L~Ls~n~-i~~~~~------------------~~---------------------------------- 132 (461)
T 1z7x_W 108 TL--RTLPTLQELHLSDNL-LGDAGL------------------QL---------------------------------- 132 (461)
T ss_dssp HT--TSCTTCCEEECCSSB-CHHHHH------------------HH----------------------------------
T ss_pred HH--ccCCceeEEECCCCc-CchHHH------------------HH----------------------------------
Confidence 33 566777777777643 111000 00
Q ss_pred cccccCCcchhhhccccCCCCCCCceEeeccChhhH----HHHHhhcCCCCccEEeecccCCCcccCcccc-----CCCC
Q 002156 678 CIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE----SIAERLDNNTSLEIISIGSCGNLKILPSGLH-----NLCQ 748 (959)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-----~l~~ 748 (959)
+...+ .... ++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++
T Consensus 133 -------l~~~l----~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 133 -------LCEGL----LDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp -------HHHHH----TSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred -------HHHHH----hcCC-CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence 00000 0000 478888888887655 5677888899999999999986554333332 3679
Q ss_pred cceeeccccccccc----cCCCCCCCCCccEEEecCCcCcCcc-----ccccCCCCccceeeeccCCCCCC----CcccC
Q 002156 749 LQEIEIWNCGNLVS----FPEGGLPCAKLMRLEIYGCERLEAL-----PKGLHNLTSLQELRIGRGVELPS----LEEED 815 (959)
Q Consensus 749 L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~ 815 (959)
|++|++++|..... ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+... ++..+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 99999999965442 4555667899999999999875532 23334689999999999988753 56667
Q ss_pred CCCCCcceEEccCCchhhhhhhhhccCC-CCCCCccEEEEcccCCCcccc-------cCCCCCceEeeccCCCCcccc-c
Q 002156 816 GLPTNLQSLDIWGNIEIWKSMIERGRGF-HGFSSLRRLEIRGCDDDMVSF-------PLPASLTSLEISFFPNLERLS-S 886 (959)
Q Consensus 816 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~l~-~ 886 (959)
..+++|++|++++|.............+ ...++|++|++++|....... ...++|++|++++| .+.... .
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 359 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR 359 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH
Confidence 7789999999999975443322211212 234699999999986544321 13589999999997 566532 2
Q ss_pred ----ccCC-CCCCcEEecCCCcCCC-----CCCCC-CCccccceeeccCCh
Q 002156 887 ----SIVD-LQILTELRLYHCRKLK-----YFPKK-GLPSSLLRLWIEGCP 926 (959)
Q Consensus 887 ----~~~~-l~~L~~L~l~~c~~l~-----~l~~~-~~~~~L~~L~l~~c~ 926 (959)
.+.. .++|++|++++|. ++ .++.. .-.++|++|++++|+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2222 7899999999984 44 34331 115789999999996
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=197.24 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=75.1
Q ss_pred hcCCCCccEEeecccCCCcc-cCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKI-LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
+..+++|++|++++|...+. .+..+..+++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 34444555555555532222 23445555555555555554444445555555556666665555432222223345556
Q ss_pred ceeeeccCCCCCCCcccCC---CCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 798 QELRIGRGVELPSLEEEDG---LPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
+.|++++|.+.+..+..+. ..+.++.++++++..........+..+..+++ |+.|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~---------------------L~~L~ 283 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG---------------------LLELE 283 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT---------------------CCEEE
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC---------------------CCEEE
Confidence 6666666555543322211 23344444444443222111111111222333 33333
Q ss_pred eccCCCCcccccc-cCCCCCCcEEecCCCc
Q 002156 875 ISFFPNLERLSSS-IVDLQILTELRLYHCR 903 (959)
Q Consensus 875 l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 903 (959)
+++ +.++.+|.. +..+++|++|++++|+
T Consensus 284 Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 284 FSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 333 355666654 3566777777777664
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=197.61 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=141.7
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC--CCCCCCCccEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 776 (959)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.. +.+|. .+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEE
Confidence 3566666666655554555566667777777766665544444466677777777776643 34443 45566777777
Q ss_pred EecCCc-CcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 777 EIYGCE-RLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 777 ~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
++++|. +.+..+..+.++++|+.|++++|.+.+..|..+..+++|++|++++|....... ..+..+++|++|+++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELR 230 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECC
Confidence 777764 333334566667777777777777666666666677777777777775322111 122345677777777
Q ss_pred ccCCCccccc------CCCCCceEeeccCCC----CcccccccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeecc
Q 002156 856 GCDDDMVSFP------LPASLTSLEISFFPN----LERLSSSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIE 923 (959)
Q Consensus 856 ~~~~~~~~~~------~~~~L~~L~l~~~~~----l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 923 (959)
+|........ ....++.++++++.. +..+|..+..+++|++|++++| .++.+|...+ .++|++|+++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 6644332221 345567777776532 2247878899999999999996 6778887643 6899999999
Q ss_pred CCh
Q 002156 924 GCP 926 (959)
Q Consensus 924 ~c~ 926 (959)
+|+
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 886
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.2e-19 Score=201.32 Aligned_cols=222 Identities=19% Similarity=0.162 Sum_probs=174.2
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34688999999988887778888899999999999988887777888889999999999986544444457778899999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
++++|++....+..+.++++|+.|++++|...+.++. .+..+++|++|++++|..... ..+..+++|++|+++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMS 226 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECc
Confidence 9999988766667788899999999998766656554 577889999999999864321 236778899999998
Q ss_pred ccCCCccc---ccCCCCCceEeeccCCCCccc-ccccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 856 GCDDDMVS---FPLPASLTSLEISFFPNLERL-SSSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 856 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
+|...... +.-+++|+.|++++| .+..+ |..+..+++|++|++++| .++.++...+ .++|+.|++++||
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 87655442 335678999999996 45554 557888999999999986 6778877644 5789999998876
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.6e-19 Score=190.28 Aligned_cols=134 Identities=14% Similarity=0.024 Sum_probs=102.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 35666666666655555566777888888888888777666666788888888888888544433345777888888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+..
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888777888888888888888888888766666788888888888888754
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.1e-19 Score=191.67 Aligned_cols=224 Identities=19% Similarity=0.115 Sum_probs=157.5
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcc--cCccccCCCCcceeeccccccccccCCCCCCCCCccE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKI--LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (959)
|+++++|++++|.+....+..+..+++|++|++++|.+... .|..+..+++|++|++++|. +..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 35778888887776644344567888888888888766532 25556677888888888874 4456666777788888
Q ss_pred EEecCCcCcCccc-cccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEE
Q 002156 776 LEIYGCERLEALP-KGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEI 854 (959)
Q Consensus 776 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 854 (959)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... .+..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEEC
Confidence 8888887665544 46777888888888888887777777777888888888888643211 1245677788888888
Q ss_pred cccCCCccc---ccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCC--CCccccceeeccCCh
Q 002156 855 RGCDDDMVS---FPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKK--GLPSSLLRLWIEGCP 926 (959)
Q Consensus 855 ~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 926 (959)
++|...... +..+++|+.|++++| .+..++. .+..+++|++|++++|......+.. .++++|+.|++++|+
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 887544432 224567888888885 5666655 6788899999999987544433332 245689999998876
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.1e-21 Score=228.69 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=58.7
Q ss_pred eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcc----c
Q 002156 475 ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLP----Q 550 (959)
Q Consensus 475 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~ 550 (959)
+|+.++++++.+.......+...+++|++|++++|..++..... .....+++|++|++++|.+.+..+ .
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA-------AIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH-------HHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH-------HHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 34444444444322222223334566666666666544321111 111122566666666665433222 2
Q ss_pred cccCCCCcceeeeccCCCcccCC-----C-CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecC
Q 002156 551 SSLSLSSLREIVIYKCSSLVSFP-----E-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSC 615 (959)
Q Consensus 551 ~l~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 615 (959)
....+++|++|++++|. ..+. . ...+++|++|++++|...+.++..+ ..+++|++|.+++|
T Consensus 179 ~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccc
Confidence 22245566666666654 1111 0 1224566666666664444333333 44556666665544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.3e-19 Score=200.24 Aligned_cols=228 Identities=18% Similarity=0.104 Sum_probs=156.9
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
+++++.|++++|.+.+..+..+.++++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCE
Confidence 3678888888888877777788888888888888885443332 46667888888888887544333333 67788888
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|. +..++... +..+
T Consensus 152 L~L~~N~-l~~~~~~~---------------------------------~~~l--------------------------- 170 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYA---------------------------------FNRV--------------------------- 170 (452)
T ss_dssp EECCSCC-CCEECTTT---------------------------------TTTC---------------------------
T ss_pred EECCCCC-cceeCHhH---------------------------------HhcC---------------------------
Confidence 8888753 22222110 0011
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHH-hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAE-RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
++|++|++++|...+.++. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|......|..+.
T Consensus 171 ---------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 171 ---------PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ---------TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred ---------CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccccc
Confidence 2444444444333333222 46667777777777776554 33 477788888888888876666677777
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888888888888887777778888888888888888888666666778888888888888743
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=197.72 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=157.5
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+.++.|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35778888888877766667778888888888888877766667778888888888888754433333567778888888
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+++|.+....+..+.++++|+.|++++|...+.++. .+..+++|++|++++|..... ..+..+++|++|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEECTT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEECCC
Confidence 888887666666777888888888887655555544 567788888888888854321 2356677888888887
Q ss_pred cCCCcc---cccCCCCCceEeeccCCCCcccc-cccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 857 CDDDMV---SFPLPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 857 ~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
|..... .+.-+++|+.|++++| .++.++ ..+..+++|++|++++| .++.++...+ .++|+.|+++++|
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 654433 2335677888888885 455554 46788888888888885 5667776543 5788888888776
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.2e-20 Score=198.58 Aligned_cols=217 Identities=11% Similarity=0.037 Sum_probs=153.8
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
+++|++|++++|.+.+..|..+..+++|++|++++|..... +++..+++|++|++++|...+ ++ ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~-l~------~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-LL------VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCSSEEEE-EE------ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcCCcccc-cc------CCCCcCEE
Confidence 36888888888888777677788888899999888855433 336667777777777776322 21 22556666
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.. + .++.
T Consensus 105 ~l~~n~l-~-----------------------~~~~-------------------------------------------- 116 (317)
T 3o53_A 105 HAANNNI-S-----------------------RVSC-------------------------------------------- 116 (317)
T ss_dssp ECCSSCC-S-----------------------EEEE--------------------------------------------
T ss_pred ECCCCcc-C-----------------------CcCc--------------------------------------------
Confidence 6665321 1 1100
Q ss_pred ccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccc-cCCCCcceeeccccccccccCCCCCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGL-HNLCQLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.. +.++.. ..
T Consensus 117 ----~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~ 189 (317)
T 3o53_A 117 ----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQ-VV 189 (317)
T ss_dssp ----CCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEECC-CC
T ss_pred ----ccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cccccc-cc
Confidence 000 467788888777777666677888889999998888877666655 4688999999998854 444433 34
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
+++|++|++++|.+.+. |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+..
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 78899999999887654 445888889999999998887 56777778888888888888654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=8.3e-19 Score=197.15 Aligned_cols=227 Identities=16% Similarity=0.104 Sum_probs=162.2
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCcc
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLE 608 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 608 (959)
+++++.|++++|.+....+..+.++++|++|++++|... .++ .+..+++|++|++++|......+..+ ..+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCc
Confidence 367888888888877666677888888888888888543 333 35667788888888886543333333 6677788
Q ss_pred EEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 609 ILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 609 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
+|++++|. +..++... +..+
T Consensus 140 ~L~L~~N~-i~~~~~~~---------------------------------~~~l-------------------------- 159 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYA---------------------------------FNRI-------------------------- 159 (440)
T ss_dssp EEECCSCC-CCEECTTT---------------------------------TTTC--------------------------
T ss_pred eeeCCCCc-ccccCHHH---------------------------------hhhC--------------------------
Confidence 88777743 22221100 0011
Q ss_pred hhccccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 689 LESLEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 689 l~~~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
++|++|++++|...+.++ ..+..+++|++|++++|.+. .+| .+..+++|++|++++|......|..+
T Consensus 160 ----------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 160 ----------PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp ----------TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ----------cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence 355555555544443333 25677888888888887655 445 47888999999999997666667788
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|+..
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88999999999999988888888889999999999999998777777788899999999999754
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=6.5e-19 Score=185.59 Aligned_cols=203 Identities=22% Similarity=0.188 Sum_probs=156.9
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccccc-CCCCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSF-PEGGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 775 (959)
+|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3468999999999887776778899999999999999887777888999999999999999745555 667888999999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|++|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC----HHHhcCccccCEEECC
Confidence 999999988877888899999999999999998766667888999999999999643221 1346678888888888
Q ss_pred ccCCCccc---ccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcC
Q 002156 856 GCDDDMVS---FPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRK 904 (959)
Q Consensus 856 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 904 (959)
+|...... +..+++|+.|++++| .+..+|. .+..+++|++|++++|+.
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 86443331 223456777777774 4555553 466677777777777654
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=9.5e-22 Score=231.64 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=117.4
Q ss_pred CCCceEeeccChhhHH-HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccc--------ccccc--cCCCC
Q 002156 699 PSLKSLGVFECSKLES-IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNC--------GNLVS--FPEGG 767 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~--------~~l~~--~~~~~ 767 (959)
++|++|++++|..... +...+..+++|++|++++|-....++.....+++|++|++++| ..++. +....
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 6888888888885543 3444678888888888887211122333345788888888543 22211 11111
Q ss_pred CCCCCccEEEecCCcCcCccccccC-CCCccceeeec-----cCCCCCCCc------ccCCCCCCcceEEccCCchhhhh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLH-NLTSLQELRIG-----RGVELPSLE------EEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~-----~n~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
..+++|++|.+..+.+.+..+..+. .+++|+.|+++ +|...+..| ..+..+++|+.|+++++ ++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~--l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS--CCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc--ccHH
Confidence 2367888887777766554444443 57888888888 232222222 12445678888888762 2222
Q ss_pred hhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCcccc-cccCCCCCCcEEecCCCcC
Q 002156 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 836 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 904 (959)
... .....+++|+.|++++|....... ..+++|+.|++++|+.-...+ ..+..+++|++|++++|+.
T Consensus 447 ~~~--~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFE--YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHH--HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHH--HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 111 111236778888888765322222 135778888888876522222 2344577888888888764
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=204.89 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=177.4
Q ss_pred cccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 530 LSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 530 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
.+++|++|++++|.+.+..|..+..+++|++|++++|...... ++..+++|++|++++|.... ++ ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-l~------~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-LL------VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE-EE------ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC-CC------CCCCcCE
Confidence 3468999999999888877788889999999999998654333 36677888888888876432 22 2256666
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|.. ..++.
T Consensus 104 L~L~~N~l------------------------~~~~~------------------------------------------- 116 (487)
T 3oja_A 104 LHAANNNI------------------------SRVSC------------------------------------------- 116 (487)
T ss_dssp EECCSSCC------------------------CCEEE-------------------------------------------
T ss_pred EECcCCcC------------------------CCCCc-------------------------------------------
Confidence 66666421 11110
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCcccc-CCCCcceeeccccccccccCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLH-NLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
..+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.... +|. ..
T Consensus 117 -----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~-~~ 188 (487)
T 3oja_A 117 -----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QV 188 (487)
T ss_dssp -----CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CC
T ss_pred -----ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc-cc
Confidence 001 5788888888888887788889999999999999999888887776 79999999999996544 443 33
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
.+++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+......+ ..+..++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~ 263 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQR 263 (487)
T ss_dssp CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHH
T ss_pred cCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCC
Confidence 5899999999999987654 458899999999999999984 777888999999999999987633322 23445566
Q ss_pred ccEEEEc
Q 002156 849 LRRLEIR 855 (959)
Q Consensus 849 L~~L~l~ 855 (959)
|+.+++.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=6.3e-18 Score=194.90 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=40.5
Q ss_pred eeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCC
Q 002156 91 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 170 (959)
+++|++++|.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc
Confidence 5555555555555555444 455555555555555554 3455555555553 3444543 44555555555554
Q ss_pred cccccc
Q 002156 171 SLEEMP 176 (959)
Q Consensus 171 ~~~~~p 176 (959)
++.+|
T Consensus 113 -l~~l~ 117 (622)
T 3g06_A 113 -LTHLP 117 (622)
T ss_dssp -CCCCC
T ss_pred -CCCCC
Confidence 44444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.6e-17 Score=191.51 Aligned_cols=257 Identities=26% Similarity=0.294 Sum_probs=140.2
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
.+++.|++++|.+. .+|..+. ++|++|++++|. ++.+|. .+++|++|++++|.. +.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l-~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL-TSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCC-SCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcC-CcCCC-----CCCCCCEEE
Confidence 46888999888875 6676554 789999999884 556765 578899999998874 34543 467888888
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|. ++.++. .+++|+.|++.++ +++.++ ..
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N-~l~~lp-----------------------------------------~~--- 139 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLP-----------------------------------------VL--- 139 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSS-CCSCCC-----------------------------------------CC---
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCC-CCCcCC-----------------------------------------CC---
Confidence 88753 333332 2333444443332 122111 00
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
+++|++|++++|.+.+ +| ..+++|+.|++++|.+.+ +| ..+++|++|++++|. ++.+|.. .+
T Consensus 140 ------l~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~ 201 (622)
T 3g06_A 140 ------PPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQ-LASLPTL---PS 201 (622)
T ss_dssp ------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCCC---CT
T ss_pred ------CCCCCEEECcCCcCCC-cC---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCC-CCCCCCc---cc
Confidence 0345555555543322 11 123445555555444332 23 224455555555543 2233321 23
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+|+.|++++|.+. .+|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|
T Consensus 202 ~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N---------------------- 251 (622)
T 3g06_A 202 ELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN---------------------- 251 (622)
T ss_dssp TCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS----------------------
T ss_pred hhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC----------------------
Confidence 4555555555433 2222 12445555555554442 33 23344455555444
Q ss_pred EEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 852 LEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 852 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
....++. .+++|+.|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 252 ------~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 252 ------RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ------CCSCCCC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ------CCCcCCc-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 3322222 4566777777774 6778888888888888888888764
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.6e-18 Score=181.72 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=151.0
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44689999999998877666688999999999999998877777788999999999999997666666778889999999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc----E
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR----R 851 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~ 851 (959)
++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|....... ..+..+++|+ .
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcccccee
Confidence 9999998877776789999999999999998863 68888999999999999997443221 2233344444 6
Q ss_pred EEEcccCCCccccc--CCCCCceEeeccCCCCcccccc-cCCCCCCcEEecCCCc
Q 002156 852 LEIRGCDDDMVSFP--LPASLTSLEISFFPNLERLSSS-IVDLQILTELRLYHCR 903 (959)
Q Consensus 852 L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 903 (959)
|+++++........ ...+|+.|++++| .++.+|.. +..+++|++|++++|+
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 77777543333222 1225666666664 45555543 4566666666666654
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.5e-18 Score=185.63 Aligned_cols=214 Identities=16% Similarity=0.063 Sum_probs=143.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEEEC
Confidence 467778887777777667777788888888887777665443 7777888888888774 33343 2267788888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+. .+++|+.|++++|.+.+..+..++.+++|++|++++|........ .....+++|++|++++|.
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSC
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCCCc
Confidence 87776655433 356777888888877766666677777788888877764332221 112356777888887765
Q ss_pred CCccccc-CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCC-CCccccceeeccCChh
Q 002156 859 DDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPL 927 (959)
Q Consensus 859 ~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 927 (959)
....... .+++|+.|++++| .++.+|+.+..+++|++|++++| .++.+|.. ...++|+.|++++|+.
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred CcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 4444322 4677888888874 66677767777788888888775 45566653 2356777787777653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=6.6e-19 Score=187.83 Aligned_cols=220 Identities=18% Similarity=0.110 Sum_probs=149.0
Q ss_pred CceEeeccChhhH-HHHHhh-------cCCCCccEEeecccCCCcccCccc--cCCCCcceeeccccccccccCCCCCCC
Q 002156 701 LKSLGVFECSKLE-SIAERL-------DNNTSLEIISIGSCGNLKILPSGL--HNLCQLQEIEIWNCGNLVSFPEGGLPC 770 (959)
Q Consensus 701 L~~L~l~~~~~~~-~~~~~~-------~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~ 770 (959)
|+.|++++|.+.. .+|..+ ..+++|++|++++|.+.+.+|..+ ..+++|++|++++|..... |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5566666555421 222222 367888888888888877777765 7888888888888854443 6544444
Q ss_pred -----CCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--CcccC--CCCCCcceEEccCCchhhhhhhhhcc
Q 002156 771 -----AKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LEEED--GLPTNLQSLDIWGNIEIWKSMIERGR 841 (959)
Q Consensus 771 -----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~ 841 (959)
++|++|++++|++.+..|..++.+++|++|++++|.+.+. ++..+ +.+++|++|++++|....... ....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HHHH
Confidence 7888888888888777777888888888888888887654 23333 677888888888886432111 1112
Q ss_pred CCCCCCCccEEEEcccCCCccc----ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCcccc
Q 002156 842 GFHGFSSLRRLEIRGCDDDMVS----FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSL 917 (959)
Q Consensus 842 ~~~~l~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 917 (959)
.+..+++|++|++++|...... +..+++|+.|++++| .++.+|..+. ++|++|++++| .++.+|.-.-.++|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L 298 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQV 298 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCC
Confidence 2345678888888886544422 123577888888884 5678887665 78888888875 56666653335778
Q ss_pred ceeeccCCh
Q 002156 918 LRLWIEGCP 926 (959)
Q Consensus 918 ~~L~l~~c~ 926 (959)
++|++++++
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 888888775
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.2e-18 Score=193.75 Aligned_cols=215 Identities=16% Similarity=0.059 Sum_probs=169.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+..| +..+++|++|++++|. ++.+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 589999999998888778889999999999999988776655 8889999999999985 444442 278999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|++++|......+. .....+++|++|++++|.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCCc
Confidence 99988776554 457899999999999988887888899999999999975443221 122367899999999876
Q ss_pred CCccccc-CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCC-CCccccceeeccCChhH
Q 002156 859 DDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 859 ~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 928 (959)
....... .+++|+.|++++| .+..+|+.+..+++|+.|++++| .++.+|.. +.+++|+.|++++|+..
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 5544322 5788999999995 67888888889999999999985 46667764 33678999999988654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.1e-18 Score=186.02 Aligned_cols=245 Identities=19% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC-cccCcccc-------CCCCcceeeccccccccccCCCC--C
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL-KILPSGLH-------NLCQLQEIEIWNCGNLVSFPEGG--L 768 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~-------~l~~L~~L~l~~~~~l~~~~~~~--~ 768 (959)
++|++|++++|.. .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|...+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4788899998887 555555443 899999998873 35566555 79999999999998777888876 7
Q ss_pred CCCCccEEEecCCcCcCccccccCCC-----CccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNL-----TSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGF 843 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 843 (959)
.+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|+............+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999998877 7777766 9999999999999988888999999999999999985543222212334
Q ss_pred CCCCCccEEEEcccCCCcccc------cCCCCCceEeeccCCCCcccc--cccCCCCCCcEEecCCCcCCCCCCCCCCcc
Q 002156 844 HGFSSLRRLEIRGCDDDMVSF------PLPASLTSLEISFFPNLERLS--SSIVDLQILTELRLYHCRKLKYFPKKGLPS 915 (959)
Q Consensus 844 ~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 915 (959)
..+++|++|++++|....... ..+++|+.|++++| .+...+ ..+..+++|++|++++| .++.+|.... +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-C
Confidence 789999999999986553211 14579999999996 455543 35667899999999996 4678887544 8
Q ss_pred ccceeeccCChhHHHHHhhcCCCccccccCcceEEeCceEeec
Q 002156 916 SLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQIDLKWVFG 958 (959)
Q Consensus 916 ~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 958 (959)
+|++|++++|.- +.. ..+....++..++++.+.+.|
T Consensus 275 ~L~~L~Ls~N~l-~~~------p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRL-DRN------PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCC-CSC------CCTTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCC-CCC------hhHhhCCCCCEEeccCCCCCC
Confidence 999999999853 211 225566777778888887655
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.9e-17 Score=173.84 Aligned_cols=176 Identities=16% Similarity=0.042 Sum_probs=130.8
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ...+++|++|++++|. ++.+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 577888888888777667788888889999998887655433 2678889999998884 5577877888888999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|++.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|...... ...+..+++|+.|++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~-- 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQE-- 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCS--
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC----HHHhcCcCCCCEEECCC--
Confidence 998887777778888889999999999888666666778888888888888643211 13345667777777766
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
+.++.+|..+..+++|+.|++++|+
T Consensus 182 --------------------N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 --------------------NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --------------------SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --------------------CcCCccChhhcccccCCeEEeCCCC
Confidence 4555666655556666666666554
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.3e-17 Score=170.31 Aligned_cols=201 Identities=17% Similarity=0.119 Sum_probs=140.2
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccC-CCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCG-NLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMR 775 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 775 (959)
|+++++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|..++.++ ..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4578888888888776666678888888888888887 444444567888888888888833444554 45677888888
Q ss_pred EEecCCcCcCccccccCCCCccc---eeeeccC-CCCCCCcccCCCCCCcc-eEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQ---ELRIGRG-VELPSLEEEDGLPTNLQ-SLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
|++++|.+.+ +|. +..+++|+ .|++++| .+.+..+..+..+++|+ +|++++|....... ..+.. +
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~--- 179 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----YAFNG-T--- 179 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----TTTTT-C---
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----hhcCC-C---
Confidence 8888888665 555 77777777 8888888 66655555577788888 88888875321100 11111 3
Q ss_pred EEEEcccCCCcccccCCCCCceEeeccCCCCccccc-ccCCC-CCCcEEecCCCcCCCCCCCCCCccccceeeccCChhH
Q 002156 851 RLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDL-QILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 851 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 928 (959)
+|+.|++++|..++.+|. .+..+ ++|++|++++ +.++.+|.. ..++|+.|++.+++.+
T Consensus 180 ------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 180 ------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred ------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 455556666545778765 57778 8999999998 457788776 3578999999888753
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=3.3e-17 Score=170.72 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=112.3
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+.+++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35677777777766555555667777777777777666544444556677777777777654333333455667777777
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
+++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|....... ..+..+++|++|++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L--- 188 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKL--- 188 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEEC---
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEEC---
Confidence 77777666666666677777777777777665444446666777777777664322111 22334444444444
Q ss_pred CCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcC
Q 002156 858 DDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRK 904 (959)
Q Consensus 858 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 904 (959)
++ +.++.+|. .+..+++|++|++++|+.
T Consensus 189 ------------------~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 189 ------------------DN-NQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ------------------CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------------------CC-CcCCcCCHHHhccccCCCEEEecCCCe
Confidence 44 45666665 466778888888888763
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=6e-17 Score=168.72 Aligned_cols=196 Identities=18% Similarity=0.128 Sum_probs=141.6
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l 778 (959)
..+.++++++.... +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|... .+|. .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 45667777665443 44333 257888888888777666667888888888888888544 4444 4567888888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~-- 166 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP----KGVFDKLTSLKELRLYN-- 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC----HhHccCCcccceeEecC--
Confidence 888877666667788888888888888888776767778888888888888532211 12244455555555554
Q ss_pred CCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
+.++.+|. .+..+++|++|++++| .++.++...+ .++|+.|++++||
T Consensus 167 --------------------n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 --------------------NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------------------SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------------CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 56777776 5788999999999997 6778887644 5789999998876
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=9.1e-17 Score=164.09 Aligned_cols=155 Identities=21% Similarity=0.141 Sum_probs=75.2
Q ss_pred cCCCCccEEeecc-cCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCcc---EEEecCC-cCcCccccccCCC
Q 002156 720 DNNTSLEIISIGS-CGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLM---RLEIYGC-ERLEALPKGLHNL 794 (959)
Q Consensus 720 ~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l 794 (959)
..+++|++|++++ |.+.+..+..+..+++|++|++++|. ++.+|. +..+++|+ +|++++| .+.+..+..+.++
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 3344444444444 33333333445555555555555553 233443 44455555 6666666 4433333445566
Q ss_pred Cccc-eeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC-CCccEEEEcccCCCcccccCCCCCce
Q 002156 795 TSLQ-ELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF-SSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 795 ~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
++|+ .|++++|.+. .+|......++|++|++++|+.+.... ...+..+ ++|+.|++++
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~---------------- 214 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQ---------------- 214 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTT----------------
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCC----------------
Confidence 6666 6666666555 333332222566666666663222111 1223334 4444444444
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
+.++.+|.. .+++|+.|+++++..
T Consensus 215 ------N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 ------TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ------CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred ------CccccCChh--HhccCceeeccCccC
Confidence 455555543 566677777766543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.4e-16 Score=165.33 Aligned_cols=203 Identities=17% Similarity=0.085 Sum_probs=149.7
Q ss_pred ccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCcc
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLK 631 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 631 (959)
+.+++++++++++++ .++.+|. ..++.++.|++++|......+..+ ..+++|++|++++|. ++.++...
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~------ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAE-LTKLQVDG------ 74 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGG--TTCTTCCEEECTTSC-CCEEECCS------
T ss_pred ccccCCccEEECCCC-CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHh--hcCCCCCEEECCCCc-cCcccCCC------
Confidence 456778888888776 4445553 234678888888888655555544 677888888888743 22111100
Q ss_pred EEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChh
Q 002156 632 QLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSK 711 (959)
Q Consensus 632 ~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~ 711 (959)
.+ ++|++|++++|.+
T Consensus 75 ----------------------------------------------------------------~l-~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 75 ----------------------------------------------------------------TL-PVLGTLDLSHNQL 89 (290)
T ss_dssp ----------------------------------------------------------------CC-TTCCEEECCSSCC
T ss_pred ----------------------------------------------------------------CC-CcCCEEECCCCcC
Confidence 00 4566666666654
Q ss_pred hHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccccc
Q 002156 712 LESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGL 791 (959)
Q Consensus 712 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 791 (959)
. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|+.|++++|++....+..+
T Consensus 90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 4 445567788899999999988877777889999999999999996554444456788999999999999876666677
Q ss_pred CCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 792 HNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 792 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|+.|++++|.+. .+|..+...++|+.+++++|+..
T Consensus 169 ~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88999999999999988 77878888889999999999754
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.7e-17 Score=171.40 Aligned_cols=113 Identities=14% Similarity=-0.006 Sum_probs=79.8
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 35556667777777776666656667777788888887775443333445677788888888887776666666777888
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 888888888776666667777788888887775
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.3e-16 Score=166.95 Aligned_cols=205 Identities=19% Similarity=0.089 Sum_probs=121.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++|++|++++|.+.+..+..+.++++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEE
Confidence 567777887777765555577778888888888874433222 35567777777777777554444444 566777777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.. ..++..
T Consensus 106 ~l~~n~l-~~~~~~------------------------------------------------------------------ 118 (276)
T 2z62_A 106 VAVETNL-ASLENF------------------------------------------------------------------ 118 (276)
T ss_dssp ECTTSCC-CCSTTC------------------------------------------------------------------
T ss_pred ECCCCCc-cccCch------------------------------------------------------------------
Confidence 7766431 111000
Q ss_pred ccccCCCCCCCceEeeccChhhH-HHHHhhcCCCCccEEeecccCCCcccCccccCCCCcc----eeeccccccccccCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLE-SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQ----EIEIWNCGNLVSFPE 765 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~l~~~~~ 765 (959)
.++.+ ++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..+..+..+++|+ +|++++|.. ..++.
T Consensus 119 --~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~ 194 (276)
T 2z62_A 119 --PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP 194 (276)
T ss_dssp --CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECT
T ss_pred --hcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc-cccCc
Confidence 00111 356666666655544 2455666677777777777766655555555555555 666666643 33443
Q ss_pred CCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCC
Q 002156 766 GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELP 809 (959)
Q Consensus 766 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 809 (959)
......+|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 195 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 33344466666666666555444455666666666666666653
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=6.9e-16 Score=164.34 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=120.5
Q ss_pred cccceEEEecCCCCCCccccc--cCCCCcceeeeccCCCcccCCC-----CcCCCCCCeEEEecCCCCcccChhhhcCCC
Q 002156 532 CRLEYLTLSGCQGLVKLPQSS--LSLSSLREIVIYKCSSLVSFPE-----VALPSKLKKINIWHCDALKSLPEAWMCDTN 604 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 604 (959)
++|++|++++|.+.+..|..+ ..+++|++|++++|......+. +..+++|++|++++|......+..+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccC
Confidence 679999999999888888777 8899999999999866544332 2347778888888887655444444 566
Q ss_pred CCccEEEEecCCCCcc--ccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 605 SSLEILTISSCHSLTY--FGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 605 ~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
++|++|++++|..... ++.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~----------------------------------------------------------- 189 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA----------------------------------------------------------- 189 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT-----------------------------------------------------------
T ss_pred CCCCEEECCCCCCccchhhhH-----------------------------------------------------------
Confidence 7777777776542211 000
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhH--HHHH-hhcCCCCccEEeecccCCCcccCccccCC---CCcceeeccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAE-RLDNNTSLEIISIGSCGNLKILPSGLHNL---CQLQEIEIWN 756 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~ 756 (959)
.. .++.+ ++|++|++++|.+.. ..+. .++.+++|++|++++|.+.+..|..+..+ ++|++|++++
T Consensus 190 ~~--------~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 190 AL--------CPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp TS--------CTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred HH--------hhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00 00111 466667776666532 2222 24566777777777766666555555554 4666666666
Q ss_pred cccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCC
Q 002156 757 CGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 757 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 808 (959)
|.. +.+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|++.
T Consensus 261 N~l-~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 261 AGL-EQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCC-CSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCC-Cchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 643 34554442 4666666666655432 22 345555555555555544
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=8.9e-18 Score=181.89 Aligned_cols=220 Identities=15% Similarity=0.089 Sum_probs=122.9
Q ss_pred CCceEeeccChhhHHHHHhhcCC--CCccEEeecccCCCcccCccccCCCCcceeeccccccccc-cCCCCCCCCCccEE
Q 002156 700 SLKSLGVFECSKLESIAERLDNN--TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS-FPEGGLPCAKLMRL 776 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L 776 (959)
.++.++++++... +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|..... ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4566666666544 2334444 5667777766655554443 44567777777776654333 55555566677777
Q ss_pred EecCCcCcCccccccCCCCccceeeeccC-CCCC-CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCC-CccEEE
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRG-VELP-SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFS-SLRRLE 853 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~ 853 (959)
++++|.+.+..+..++.+++|++|++++| .+.+ .++..+..+++|++|++++|..++..... ..+..++ +|++|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEE
Confidence 77777665555666666677777777776 3433 24444556667777777776333321111 2234566 677777
Q ss_pred EcccCC-Cc-cc----ccCCCCCceEeeccCCCCc-ccccccCCCCCCcEEecCCCcCCCCCCCC--CCccccceeeccC
Q 002156 854 IRGCDD-DM-VS----FPLPASLTSLEISFFPNLE-RLSSSIVDLQILTELRLYHCRKLKYFPKK--GLPSSLLRLWIEG 924 (959)
Q Consensus 854 l~~~~~-~~-~~----~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~ 924 (959)
+++|.. .. .. ...+++|+.|++++|..++ ..+..+..+++|++|++++|..+...... +-.++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 766531 11 11 1135667777777765443 34446666677777777776533221100 1145677777776
Q ss_pred C
Q 002156 925 C 925 (959)
Q Consensus 925 c 925 (959)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 6
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=170.45 Aligned_cols=222 Identities=15% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCceEeeccChhhHH-HHH--hhcCCCCccEEeecccCCCcccCccc--cCCCCcceeeccccccccccC----CCCCCC
Q 002156 700 SLKSLGVFECSKLES-IAE--RLDNNTSLEIISIGSCGNLKILPSGL--HNLCQLQEIEIWNCGNLVSFP----EGGLPC 770 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~ 770 (959)
.++.+.+.++..... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567777777665432 111 22345679999999999888888887 889999999999997665444 223468
Q ss_pred CCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--Cc--ccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 771 AKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LE--EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 771 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+. ++ ..++.+++|++|++++|........ ....+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcC
Confidence 8999999999999888888899999999999999987642 22 2236788999999999975321111 11123567
Q ss_pred CCccEEEEcccCCCccc---cc---CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCcccccee
Q 002156 847 SSLRRLEIRGCDDDMVS---FP---LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRL 920 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~---~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 920 (959)
++|++|++++|...... .. .+++|+.|++++| .++.+|..+. ++|++|++++| .++.+|...-.++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEE
Confidence 89999999997655442 11 2378999999995 6778887664 89999999986 56666654456889999
Q ss_pred eccCCh
Q 002156 921 WIEGCP 926 (959)
Q Consensus 921 ~l~~c~ 926 (959)
++++++
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 999886
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.6e-16 Score=165.58 Aligned_cols=152 Identities=15% Similarity=0.049 Sum_probs=89.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4666666666655441 25666666666666666665555555666666666666666544333334556666666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|+.|++++
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccC
Confidence 666665555555566666666666666666555545566666666666666532211 12344555555555555
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=8.1e-18 Score=182.24 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccc--cCCCCCCCC-Ccc
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVS--FPEGGLPCA-KLM 774 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~-~L~ 774 (959)
+|++|++++|...+..+..++.+++|++|++++|..++ .++..+..+++|++|++++|..++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 44444444444444444444445555555555542222 1333344455555555555522221 233333444 555
Q ss_pred EEEecCCc--Cc-CccccccCCCCccceeeeccCC-CCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 775 RLEIYGCE--RL-EALPKGLHNLTSLQELRIGRGV-ELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 775 ~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
+|++++|. +. +.+|..+..+++|+.|++++|. +....+..+..+++|++|++++|........ ..+..+++|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~ 275 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---LELGEIPTLK 275 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---GGGGGCTTCC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---HHHhcCCCCC
Confidence 55555552 22 2334444555566666666665 3334444555556666666666642221111 1234455666
Q ss_pred EEEEccc
Q 002156 851 RLEIRGC 857 (959)
Q Consensus 851 ~L~l~~~ 857 (959)
+|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 6665554
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=2.5e-16 Score=167.15 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=93.5
Q ss_pred cCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
.+..+++|++|++++|.++.++. +..+++|++|+|++|+++.+| .+..+++|++|++++| .+..+|. ++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 34455555555555555555543 555555555555555555543 3555555555555553 3333432 555555555
Q ss_pred eecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEE
Q 002156 164 HNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELL 243 (959)
Q Consensus 164 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 243 (959)
|++++|. +..++. ++.++ +|+.|+
T Consensus 134 L~l~~n~-l~~~~~-l~~l~------------------------------------------------------~L~~L~ 157 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGLT------------------------------------------------------NLQYLS 157 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCT------------------------------------------------------TCCEEE
T ss_pred EECCCCc-cCcCcc-ccCCC------------------------------------------------------CccEEE
Confidence 5555554 444332 33333 444444
Q ss_pred EEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcC
Q 002156 244 LRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLK 323 (959)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 323 (959)
+++|..++ +..+..+++|+.|+++++....++. +. .+++|++|++++|.+.+.. .+..+++|+
T Consensus 158 l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 158 IGNAQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp CCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred ccCCcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 44443321 0114455667777777776666654 22 3778888888888775443 477788888
Q ss_pred eeEecCCC
Q 002156 324 HLTVRGMS 331 (959)
Q Consensus 324 ~L~L~~~~ 331 (959)
+|++++|+
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 88888765
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.8e-15 Score=155.53 Aligned_cols=131 Identities=16% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34555555555444444444444455555555444444444444444445555555444333222233344444444444
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 444444333333444444444444444444333333444444444444444
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=9.2e-16 Score=162.75 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=117.6
Q ss_pred CCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCc
Q 002156 34 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 113 (959)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~ 113 (959)
++++++.+.++.+.. ++.+..+++|+.|.+.++. ...+++ +..+++|++|++++|.++.+| .+..+++
T Consensus 41 ~~L~~L~l~~~~i~~---l~~~~~l~~L~~L~L~~n~-------i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQ-------ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred CCcCEEEeeCCCccC---chhhhccCCCCEEEccCCc-------CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 478999998776543 4567889999999998765 445555 899999999999999999886 6999999
Q ss_pred ccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceece
Q 002156 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
|++|++++|+++.+|. +..+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|++|++
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEEC
Confidence 9999999999999865 999999999999995 6666664 9999999999999998 777765 777777777643
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.5e-14 Score=156.63 Aligned_cols=156 Identities=19% Similarity=0.070 Sum_probs=101.5
Q ss_pred HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCC-CCccEEEecCCcCcCccccccCC
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPC-AKLMRLEIYGCERLEALPKGLHN 793 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 793 (959)
|..|..+++|++|++++|.+....+..+....++..|++.++..+..++. .+..+ ..++.|++++|.+.. +|.....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcc
Confidence 34566777888888888777666555566667777888877666666654 33343 357778888887654 4444445
Q ss_pred CCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCce
Q 002156 794 LTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 794 l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
.++|+.|++++|...+.+|. .+..+++|++|++++|... ..+...+.+|+.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~----------------------------~lp~~~~~~L~~ 227 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH----------------------------SLPSYGLENLKK 227 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC----------------------------CCCSSSCTTCCE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC----------------------------ccChhhhccchH
Confidence 56788888876555555654 4567777777777777421 111223345555
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYH 901 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 901 (959)
|.+.+++.++.+| .+..+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5555667778888 577888888888765
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=2.4e-15 Score=154.65 Aligned_cols=131 Identities=16% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 45555555554444444444455555555555544444444444455555555555543222222223444555555555
Q ss_pred CCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 780 GCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 554444333344455555555555555544444344444555555555554
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.4e-17 Score=183.90 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=12.8
Q ss_pred ccccc-CCCCCCcEEecCCCc
Q 002156 884 LSSSI-VDLQILTELRLYHCR 903 (959)
Q Consensus 884 l~~~~-~~l~~L~~L~l~~c~ 903 (959)
+|..+ .++++|++|++++|+
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHhcCCCceEEEccCCc
Confidence 55555 456777777777754
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=1.8e-17 Score=180.84 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCCceEeeccChhhHHHHH----hhcCC-CCccEEeecccCCCcccCcc----ccC-CCCcceeecccccccc----ccC
Q 002156 699 PSLKSLGVFECSKLESIAE----RLDNN-TSLEIISIGSCGNLKILPSG----LHN-LCQLQEIEIWNCGNLV----SFP 764 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~p~~----~~~-l~~L~~L~l~~~~~l~----~~~ 764 (959)
++|++|++++|.+.+..+. .+..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.... .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 4667777777766543333 33444 67777777776654443322 222 2467777777764432 122
Q ss_pred CCCCCCC-CccEEEecCCcCcCcccccc----CCC-CccceeeeccCCCCCC----CcccCCC-CCCcceEEccCCchhh
Q 002156 765 EGGLPCA-KLMRLEIYGCERLEALPKGL----HNL-TSLQELRIGRGVELPS----LEEEDGL-PTNLQSLDIWGNIEIW 833 (959)
Q Consensus 765 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~ 833 (959)
..+..++ +|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+... ++..+.. .++|++|++++|....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 2222333 67777777776655444322 233 3677777777666542 2323332 3466666666665433
Q ss_pred hhhhhhccCCCCCCCccEEEEccc
Q 002156 834 KSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 834 ~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
.........+..+++|++|++++|
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccC
Confidence 222111123345555666666554
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.8e-16 Score=172.87 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=163.2
Q ss_pred CCCCCCceEeeccChhhHHHH----HhhcCCC-CccEEeecccCCCcccCccccCC-----CCcceeeccccccccccCC
Q 002156 696 NLPPSLKSLGVFECSKLESIA----ERLDNNT-SLEIISIGSCGNLKILPSGLHNL-----CQLQEIEIWNCGNLVSFPE 765 (959)
Q Consensus 696 ~lp~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~l~~~~~ 765 (959)
..|++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 445679999999998776544 7788898 89999999998877666656554 9999999999975544333
Q ss_pred C----CCCC-CCccEEEecCCcCcCcccccc----CC-CCccceeeeccCCCCCCCcc----cCCCCC-CcceEEccCCc
Q 002156 766 G----GLPC-AKLMRLEIYGCERLEALPKGL----HN-LTSLQELRIGRGVELPSLEE----EDGLPT-NLQSLDIWGNI 830 (959)
Q Consensus 766 ~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~----~~~~~~-~L~~L~l~~n~ 830 (959)
. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+....+. .+...+ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 3334 799999999999876655443 34 36999999999988854332 334444 99999999997
Q ss_pred hhhhhhhhhccCCCCC-CCccEEEEcccCCCccccc--------CCCCCceEeeccCCCCcccc-----cccCCCCCCcE
Q 002156 831 EIWKSMIERGRGFHGF-SSLRRLEIRGCDDDMVSFP--------LPASLTSLEISFFPNLERLS-----SSIVDLQILTE 896 (959)
Q Consensus 831 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~l~-----~~~~~l~~L~~ 896 (959)
............+... ++|++|++++|........ .+++|++|++++| .++..+ ..+..+++|++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccE
Confidence 6544433323344556 5999999999764442111 3569999999996 565543 24578899999
Q ss_pred EecCCCcCCCCCCC--------C-CCccccceeeccCCh
Q 002156 897 LRLYHCRKLKYFPK--------K-GLPSSLLRLWIEGCP 926 (959)
Q Consensus 897 L~l~~c~~l~~l~~--------~-~~~~~L~~L~l~~c~ 926 (959)
|++++|. +..+.. . .-.++|+.|++++++
T Consensus 258 L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 258 VYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999975 122211 1 124678999999986
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.2e-14 Score=157.50 Aligned_cols=220 Identities=19% Similarity=0.084 Sum_probs=163.3
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeecccccccccc-CCCCCCCCCcc
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLVSF-PEGGLPCAKLM 774 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~ 774 (959)
+|+++++|++++|.+....+.+|.++++|++|+|++|.+.+.+| ..|.++++++++.+.++..+..+ |..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 35689999999998776555678999999999999999888775 45788888887555444455555 56678899999
Q ss_pred EEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCC-CCcceEEccCCchhhhhhhhhccCCCCCCCccEE
Q 002156 775 RLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLP-TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRL 852 (959)
Q Consensus 775 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 852 (959)
+|++++|.+....+..+....++..|++.++.....++. .+..+ ..++.|++++|..... +.......+|++|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-----~~~~f~~~~L~~l 182 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-----HNSAFNGTQLDEL 182 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-----CTTSSTTEEEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-----ChhhccccchhHH
Confidence 999999998776666666777888999977554444443 45554 4689999999964321 1223345689999
Q ss_pred EEcccCCC-ccc---ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccC
Q 002156 853 EIRGCDDD-MVS---FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEG 924 (959)
Q Consensus 853 ~l~~~~~~-~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 924 (959)
++.++... .+. +.-+++|+.|++++| .++.+|.. .+.+|++|.+.+|+.++.+|.-.-.++|+.+++.+
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99864332 222 345678999999995 89999963 36789999999999999999744468899999865
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=2.6e-16 Score=173.66 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=152.9
Q ss_pred CCCceEeeccChhhHH----HHHhhcCCCCccEEeecccCC---CcccCccc-------cCCCCcceeecccccccc---
Q 002156 699 PSLKSLGVFECSKLES----IAERLDNNTSLEIISIGSCGN---LKILPSGL-------HNLCQLQEIEIWNCGNLV--- 761 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~p~~~-------~~l~~L~~L~l~~~~~l~--- 761 (959)
++|++|++++|.+... ++..+..+++|++|++++|.. .+.+|..+ ..+++|++|++++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5788888888877665 334466888888888888633 23444444 678888888888886554
Q ss_pred -ccCCCCCCCCCccEEEecCCcCcCcccccc----CCC---------CccceeeeccCCCC-CCCc---ccCCCCCCcce
Q 002156 762 -SFPEGGLPCAKLMRLEIYGCERLEALPKGL----HNL---------TSLQELRIGRGVEL-PSLE---EEDGLPTNLQS 823 (959)
Q Consensus 762 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~l~~n~~~-~~~~---~~~~~~~~L~~ 823 (959)
.+|..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|.+. ..++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 355556677888888888888754333333 333 78888888888876 3344 34556788888
Q ss_pred EEccCCchhhhhhhh-hccCCCCCCCccEEEEcccCCCc-------ccccCCCCCceEeeccCCCCcc-----ccccc--
Q 002156 824 LDIWGNIEIWKSMIE-RGRGFHGFSSLRRLEIRGCDDDM-------VSFPLPASLTSLEISFFPNLER-----LSSSI-- 888 (959)
Q Consensus 824 L~l~~n~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-- 888 (959)
|++++|......... ....+..+++|++|++++|.... ..+...++|+.|++++|. +.. +|..+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhh
Confidence 888888654322111 11256678888888888865421 112356789999999865 544 45566
Q ss_pred CCCCCCcEEecCCCcCCCC-----CCCCC--CccccceeeccCCh
Q 002156 889 VDLQILTELRLYHCRKLKY-----FPKKG--LPSSLLRLWIEGCP 926 (959)
Q Consensus 889 ~~l~~L~~L~l~~c~~l~~-----l~~~~--~~~~L~~L~l~~c~ 926 (959)
..+++|++|++++|. ++. +|..- -.++|+.|++++|+
T Consensus 271 ~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 271 LENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 448999999999975 444 55421 14899999999985
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=6.2e-15 Score=146.76 Aligned_cols=133 Identities=16% Similarity=0.014 Sum_probs=90.9
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35778888887776655555567777777777777766655555567777777777777754433333456677777777
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 77777666555556777777777777777775555456667777777777774
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.3e-14 Score=142.81 Aligned_cols=105 Identities=22% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++|+.|++++|.+. .+| .+..+++|++|++++| ....++ .+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345555555554443 333 3555555555555555 223222 344455555555555555544455555555555555
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|.+.+..+..++.+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55555554445455555555555555554
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.7e-14 Score=151.39 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=110.1
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.++++|+.|++++|.++.+| .+..+++|++|++++|+++.++. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence 56777888888888887775 37778888888888888887765 788888888888874 455555 478888888888
Q ss_pred cCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEE
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (959)
+++|. +..++ .++.+++|++|++ +
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~l------------------------------------------------------~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLYL------------------------------------------------------G 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEEC------------------------------------------------------C
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEEc------------------------------------------------------c
Confidence 88887 66553 4555555555533 2
Q ss_pred eccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 002156 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHL 325 (959)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 325 (959)
+|..+. +..+..+++|+.|++++|....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 143 ~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 143 NNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp SSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred CCcCCc-------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 221110 0112233455555555555555544 32 36777777777776644 4557777788888
Q ss_pred EecCCC
Q 002156 326 TVRGMS 331 (959)
Q Consensus 326 ~L~~~~ 331 (959)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 887764
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=3.5e-14 Score=142.12 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=117.4
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 775 (959)
+|+.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|... .+|. .+..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCE
Confidence 3468999999999887776778899999999999999888888899999999999999999654 5554 4678999999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|++++|++.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999998888889999999999999999999777777888999999999999753
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=5.3e-14 Score=147.67 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|+.|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 3556666665544322 235556666666666665544333 5566666666666663 333332 555566666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|...... .+..+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~------~l~~l~~---------- 179 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV------PLAGLTK---------- 179 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG------GGTTCTT----------
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch------hhcCCCc----------
Confidence 66655442 3455566666666666665533 24555566666666666422110 0333444
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
|+.|++++ +.++.++ .+..+++|+.|++++|+
T Consensus 180 -----------L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 -----------LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----------CCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred -----------cCEEECCC-CcCCCCh-hhccCCCCCEEECcCCc
Confidence 44444444 4666666 47777888888888764
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.9e-13 Score=155.43 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=97.8
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
+++.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.. +.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECC
Confidence 45555555554433 33333 255666666555444 344 2355666666666533 33554 332 56666666
Q ss_pred CCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCC
Q 002156 780 GCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDD 859 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 859 (959)
+|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.... .+ . +. ++|+.|++++|..
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp----~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP----E-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC----C-CC--TTCCEEECCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc----h-hh--CCCCEEECcCCCC
Confidence 665544 333 45566666666666553 443 34566666666664221 00 1 22 5666666666544
Q ss_pred CcccccCCCCC-------ceEeeccCCCCcccccccCCCCCCcEEecCCCcCCC
Q 002156 860 DMVSFPLPASL-------TSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLK 906 (959)
Q Consensus 860 ~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 906 (959)
..++. ++.+| +.|++++ +.++.+|..+..+++|+.|++++|+.-.
T Consensus 193 ~~lp~-~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 193 ESLPA-VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC-CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cchhh-HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 43333 33455 7888887 4677888877778888888888876543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=139.61 Aligned_cols=135 Identities=12% Similarity=-0.058 Sum_probs=111.9
Q ss_pred CCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 698 PPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
|+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3577899999888766543 457889999999999988877777788899999999999986655555567788899999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999988888888889999999999999998777888888999999999999744
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.4e-13 Score=138.78 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=112.6
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 34789999999999888778889999999999999988766556667889999999999986544444456788999999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999866 67788889999999999999998666667888999999999999754
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.1e-13 Score=136.27 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=117.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|++|++++|.+. .+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57888888888766 444 588899999999998843 333 46888999999999999776667788888999999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
++|.+.+..|..++.+++|++|++++|...+.+| .+..+++|+.|++++|..... ..+..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~------~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY------RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC------TTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh------HHhccCCCCCEEEeeCc
Confidence 9999888778888999999999999998555676 688889999999999964321 13566777777777763
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.3e-14 Score=146.66 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred CCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCC
Q 002156 272 TNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 272 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 331 (959)
++|+.|++++|....+| .+. .+++|+.|++++|.+.+. ..+..+++|+.|++++|+
T Consensus 128 ~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 34444444455444444 232 367788888888877554 667788888888888764
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.3e-13 Score=151.76 Aligned_cols=176 Identities=24% Similarity=0.230 Sum_probs=141.1
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
.+|+.|++++|.+.+ +|..+ +++|++|++++|. ++.+| ..+++|++|++++|.+.+ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 489999999988765 77665 4899999999995 45788 456899999999999876 666 655 9999999
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCc
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLE 882 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 882 (959)
++|.+.+ +|. .+++|+.|++++|.... . ...+++|++|++++|....++. +.++|+.|++++| .++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l-------p~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-L-------PELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTN-LLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-------CCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-C-------CCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCC-CCC
Confidence 9999986 775 68999999999997432 1 1257899999999987655444 5589999999995 788
Q ss_pred ccccccCCCCCC-------cEEecCCCcCCCCCCCCC-CccccceeeccCChh
Q 002156 883 RLSSSIVDLQIL-------TELRLYHCRKLKYFPKKG-LPSSLLRLWIEGCPL 927 (959)
Q Consensus 883 ~l~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~ 927 (959)
.+|. +.. +| ++|++++| .++.+|... -.++|+.|++++|+.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred chhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 9997 654 78 99999985 677888742 268999999999974
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1e-13 Score=159.79 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=68.3
Q ss_pred CCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
+.++++|+.|++++|.+..+| .+..+++|++|+|++|+|..+|. +..+++|++|+|++| .+..+| .++.+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 356777777777777777775 47777777777777777777755 777777777777774 455555 57777777777
Q ss_pred ecCCCCcccccccccccccCCceec
Q 002156 165 NNSNTDSLEEMPLGIGKLTCLQTLC 189 (959)
Q Consensus 165 ~l~~~~~~~~~p~~i~~L~~L~~L~ 189 (959)
++++|. +..+| .++.+++|+.|+
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEE
T ss_pred EecCCC-CCCCc-cccCCCccCEEE
Confidence 777776 55543 355555555553
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=1.1e-12 Score=131.23 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555566555554444445555555556665555444444555555555555555555554444444455555555555
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
++|.+.+..|..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 5555555555555555555555555554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=4.9e-13 Score=154.08 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|. +..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 4667777776664432 2 46777777777777776655443 6777778888887774 34444 5667777777777
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|....... +..+++|+.|++++
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~-- 184 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSK-- 184 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCS--
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcC--
Confidence 77776542 3467777777777777777644 356677777777777775322111 34455555555555
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
+.+..+| .+..+++|+.|++++|+
T Consensus 185 --------------------N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 --------------------NHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --------------------SCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred --------------------CCCCCCh-HHccCCCCCEEEccCCc
Confidence 2444554 45566666666666654
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=6e-13 Score=132.34 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=121.8
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
.++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46899999999988776666788999999999999865443334567889999999999998876666788999999999
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCC
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNL 881 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l 881 (959)
+++|.+.+..+..+..+++|++|++++|...... ...+..+++|++|++++|... ..+++|+.|+++.+..-
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHhCC
Confidence 9999998766666888999999999999643221 134667788888888775211 13446666777666555
Q ss_pred cccccccCCCCC
Q 002156 882 ERLSSSIVDLQI 893 (959)
Q Consensus 882 ~~l~~~~~~l~~ 893 (959)
+.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 566665554443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.4e-12 Score=131.38 Aligned_cols=149 Identities=16% Similarity=0.048 Sum_probs=92.9
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
-+.++.+++ .++.+|..+ .++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666553 344555544 37777777777765555566667777777777777776555555667777777777777
Q ss_pred CCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccc
Q 002156 805 GVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERL 884 (959)
Q Consensus 805 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 884 (959)
|.+.+..+..+..+++|++|++++|.... .+..+..+++|+.|++++ +.++.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~----------------------N~l~~~ 150 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQ----------------------NQLKSI 150 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCS----------------------SCCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCC----------------------CcCCcc
Confidence 77775555556677777777777775321 112233444444444444 456666
Q ss_pred cc-ccCCCCCCcEEecCCCc
Q 002156 885 SS-SIVDLQILTELRLYHCR 903 (959)
Q Consensus 885 ~~-~~~~l~~L~~L~l~~c~ 903 (959)
|. .+..+++|++|++++|+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred CHHHHhCCCCCCEEEeeCCC
Confidence 64 46667777777777765
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=130.83 Aligned_cols=126 Identities=11% Similarity=-0.021 Sum_probs=66.1
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+.++++++.... +|..+ ...+++|++++|.+.+..| ..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666554332 33322 2234556665555544432 2345556666666665543333333455555666666666
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 65555555555555666666666665555555555555555555555553
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=3.8e-13 Score=146.23 Aligned_cols=132 Identities=14% Similarity=-0.044 Sum_probs=72.2
Q ss_pred CCCceEeeccChhhHHHHHhhc-CCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLD-NNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4566666666655554444454 566666666666655555455566666666666666643333333455556666666
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccC---CCCCCcceEEccCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED---GLPTNLQSLDIWGNI 830 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~ 830 (959)
+++|.+....|..|..+++|+.|++++|.+....+..+ ..+++|+.|++++|.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 66666555555555666666666666665553322222 345555555555553
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=5.5e-13 Score=124.53 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=105.4
Q ss_pred cCCcccEEeccccCCCCCCccc-ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcc-cchhhhcc
Q 002156 57 DIQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRA-LPESVNKL 134 (959)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i~~L 134 (959)
..++|+.|.+.++.- . ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.|.. +|..++.+
T Consensus 15 ~~~~l~~L~l~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRS------NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBC------BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCcC------ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 347789998877642 2 36777779999999999999999888 779999999999999999997 78888889
Q ss_pred ccccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceece
Q 002156 135 YNLHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCN 190 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 190 (959)
++|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++
T Consensus 88 ~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999995 566654 679999999999999998 888876 4888999998864
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.8e-13 Score=127.30 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=90.2
Q ss_pred CcccEEeccccCCCCCCccc-ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcc-cchhhhcccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRA-LPESVNKLYN 136 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i~~L~~ 136 (959)
++|+.|.+.++.- . ..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|++.. +|..++.+++
T Consensus 24 ~~L~~L~l~~n~l------~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKS------NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBC------BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCCC------ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 5677777766541 1 25666667777888888888777777 667777888888888887776 5666677888
Q ss_pred ccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceeceEEec
Q 002156 137 LHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 137 L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++..+.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888774 556654 567777788888888777 667665 47777777777665544
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=4e-13 Score=146.03 Aligned_cols=160 Identities=14% Similarity=-0.005 Sum_probs=113.5
Q ss_pred cccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCcc
Q 002156 663 SLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSG 742 (959)
Q Consensus 663 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 742 (959)
+.++.|+++++. +.. .+...+.. .+ ++|++|++++|.+....+..|..+++|++|++++|.+.+..+..
T Consensus 39 ~~l~~L~Ls~N~-l~~-l~~~~~~~--------~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNN-LSR-LRAEWTPT--------RL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSSC-CCE-ECTTSSSS--------CC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCEEECCCCC-CCc-cChhhhhh--------cc-cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 457888888753 322 11111110 22 58888888888877766677888888888888888877666667
Q ss_pred ccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccccc---CCCCccceeeeccCCCCCCCcccCCCCC
Q 002156 743 LHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGL---HNLTSLQELRIGRGVELPSLEEEDGLPT 819 (959)
Q Consensus 743 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 819 (959)
+..+++|++|+|++|......|..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+....+..+..++
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 8888888888888887665566777888888888888888766544444 5688888888888888855545566666
Q ss_pred C--cceEEccCCchhh
Q 002156 820 N--LQSLDIWGNIEIW 833 (959)
Q Consensus 820 ~--L~~L~l~~n~~~~ 833 (959)
. ++.|++++|+...
T Consensus 188 ~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 188 AWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHTTEECCSSCEEC
T ss_pred HhhcceEEecCCCccC
Confidence 5 4788888887543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.9e-12 Score=123.61 Aligned_cols=138 Identities=24% Similarity=0.255 Sum_probs=114.5
Q ss_pred ccCCCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcc-cccccc
Q 002156 31 SFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-LPDSIG 109 (959)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~ 109 (959)
..+++++++.+..+.+........+..+++|+.|.+.++. ...+ ..+..+++|++|++++|.++. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 4567899999988876511112335788999999998765 3344 777999999999999999988 687888
Q ss_pred ccCcccEEeccCCCCcccc--hhhhccccccEEeccCcchhhhhhH----hhhcccccceeecCCCCcccccccc
Q 002156 110 DLRYLRYLNLSGTHIRALP--ESVNKLYNLHTLLLEDCRELKKLCA----DMGNLIKLHHHNNSNTDSLEEMPLG 178 (959)
Q Consensus 110 ~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 178 (959)
.+++|++|++++|+|+.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ..++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999986 78999999999999995 6667765 69999999999999998 8888754
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.4e-12 Score=125.62 Aligned_cols=131 Identities=19% Similarity=0.118 Sum_probs=107.7
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCC-ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
..+.++.+|+.|.+.++. ...+ +.+..+. +|++|++++|.++.+ ..++.+++|++|+|++|+|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~-------l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-------IPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC-------Cchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 456678899999888765 3344 4454444 999999999999888 67999999999999999999997655
Q ss_pred -hccccccEEeccCcchhhhhhH--hhhcccccceeecCCCCcccccccc----cccccCCceeceEEec
Q 002156 132 -NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTDSLEEMPLG----IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 194 (959)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...+.
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 89999999999995 6778887 78999999999999998 8888875 8889999999775553
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.7e-12 Score=132.33 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=64.5
Q ss_pred cccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhcc
Q 002156 55 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKL 134 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L 134 (959)
+.++++|+.|.+.++. ...++ .+..+++|++|++++|.++.+|. +.++++|++|+|++|+++.+|....
T Consensus 37 ~~~l~~L~~L~l~~n~-------i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-------IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred hhhcCcCcEEECcCCC-------cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--
Confidence 4455556666555443 22333 45556666666666666655544 5566666666666666655543222
Q ss_pred ccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 135 YNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
.+|++|++++| .+..+| .++.+++|++|++++|. ++.+| .++.+++|++|
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVL 155 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEE
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEE
Confidence 55666666653 344443 35566666666666665 55553 35555555555
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.6e-13 Score=128.14 Aligned_cols=132 Identities=17% Similarity=0.063 Sum_probs=95.2
Q ss_pred CCCCccEEeecccCCC-cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccce
Q 002156 721 NNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQE 799 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 799 (959)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.. ..+ ..+..+++|++|++++|.+.+.+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3466777777777766 56777778888888888888844 444 56777888888888888887767777777888888
Q ss_pred eeeccCCCCCC-CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 800 LRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 800 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+. .+..++.+++|++|++++|+...... .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 88888887753 33677888888888888886433221 001235667888888765
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=124.74 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=89.3
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhh-Hhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLC-ADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i 155 (959)
..++|..+. ++|++|++++|.++.+|..|..+++|++|+|++|+|+.++ ..|.++++|++|+|++| .+..+| ..|
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 455665553 4788889999998888888888999999999999988885 56888999999999885 455554 458
Q ss_pred hcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 156 GNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
..+++|++|++++|. +..+|.+ +..+++|++|++..+.
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 888999999999888 8888865 7888888888665444
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=2.8e-12 Score=125.27 Aligned_cols=128 Identities=13% Similarity=-0.009 Sum_probs=92.3
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+.++++++.+ +.+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4455555443 23333222 2677777777766555443 377888888888888866665677777888888888888
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|++.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877777777888888888888888888777877888888888888888643
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.9e-13 Score=156.59 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=137.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccC-------------CCcccCccccCCCCcceee-ccccc------
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCG-------------NLKILPSGLHNLCQLQEIE-IWNCG------ 758 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~p~~~~~l~~L~~L~-l~~~~------ 758 (959)
+.|+.|++++|.+ +.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.
T Consensus 349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 5889999998876 4789999999999999986654 4566677888888999888 55442
Q ss_pred ------cccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 759 ------NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 759 ------~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+..+|. ..|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 428 l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 428 KFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1222221 258999999998765 665 899999999999999988 78888999999999999999643
Q ss_pred hhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccc--ccccCCCCCCcEEecCCCcCCCCCCC
Q 002156 833 WKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERL--SSSIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
.. + .+..+++|+.|++++ +.++.+ |..+..+++|++|++++|+ ++.+|.
T Consensus 500 ~l-----p-~l~~l~~L~~L~Ls~----------------------N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 500 NV-----D-GVANLPRLQELLLCN----------------------NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CC-----G-GGTTCSSCCEEECCS----------------------SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CC-----c-ccCCCCCCcEEECCC----------------------CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 21 1 345566666666655 567776 7788889999999999865 555544
Q ss_pred CC-----Cccccceee
Q 002156 911 KG-----LPSSLLRLW 921 (959)
Q Consensus 911 ~~-----~~~~L~~L~ 921 (959)
.. ..++|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 21 146777765
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=3.2e-12 Score=151.41 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=98.5
Q ss_pred CCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCc
Q 002156 34 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 113 (959)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~ 113 (959)
..++++.+..+..... ........+|+.+.+..... . ++.....+..+..++.|++|+|++|.+..+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~-~-~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD-I-ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc-c-ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 4577777765544332 12233444455554443221 0 111234455669999999999999999999988889999
Q ss_pred ccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEe
Q 002156 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 193 (959)
|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|++|++|+|++|. ++.+|.+|++|++|++|++..+
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 99999999999999999999999999999995 577999999999999999999998 8999999999999999976444
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=8.7e-11 Score=125.85 Aligned_cols=125 Identities=12% Similarity=-0.034 Sum_probs=92.5
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCcc-EE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLM-RL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~-~L 776 (959)
.+++.+.+.+.-...........+++|+.+++++|......+..|..+++|+++++.+| +..++. .|.+|++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 46677777765433333333345889999999888766666677888999999999886 555554 677888898 99
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEc
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDI 826 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 826 (959)
++.+ .+...-+..|.++++|+.+++++|.+...-+.+|..+++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 545555678888999999999888888666667888888887753
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=7.7e-12 Score=122.07 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=73.2
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc--cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhh-H
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD--SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLC-A 153 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~ 153 (959)
..++|..+.. +|++|++++|.++.++. .|..+++|++|+|++|+|+.+ |..|+++++|++|+|++| .+..+| .
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNK 96 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHH
Confidence 3555555533 67777777777777654 367777777777777777766 566777777777777774 344443 3
Q ss_pred hhhcccccceeecCCCCccccc-ccccccccCCceeceEEe
Q 002156 154 DMGNLIKLHHHNNSNTDSLEEM-PLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 154 ~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~ 193 (959)
.|+.+++|++|++++|. +..+ |..++.+++|++|++..+
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 37777777777777777 4444 455777777777755443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.4e-12 Score=154.61 Aligned_cols=191 Identities=15% Similarity=0.057 Sum_probs=109.6
Q ss_pred CceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 701 LKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 701 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+..+++..|... ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.. +.+|..+..+++|++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcC
Confidence 344444433332 55778899999999999998876 6777788999999999999954 48888889999999999999
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC-CCccEEEEcccCC
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF-SSLRRLEIRGCDD 859 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 859 (959)
|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|+.....+.. +..+ ..+..+++++
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~~~~~~~~l~l~~--- 350 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI----LTEKSVTGLIFYLRD--- 350 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH----HHHHHHHHHHHHHHH---
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH----HhhcchhhhHHhhcc---
Confidence 9977 77899999999999999999887 78888999999999999999865433221 1111 0111234444
Q ss_pred CcccccCCCCCceEeeccCC----CCccccc----ccCCCCCCcEEecCCCc
Q 002156 860 DMVSFPLPASLTSLEISFFP----NLERLSS----SIVDLQILTELRLYHCR 903 (959)
Q Consensus 860 ~~~~~~~~~~L~~L~l~~~~----~l~~l~~----~~~~l~~L~~L~l~~c~ 903 (959)
+...+.+|..|+.|+++.+. .+..++. .+..+..++...+++|-
T Consensus 351 N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 351 NRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp CCCCCCCCCC-----------------------------------------C
T ss_pred CcccCcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 45567788899999988862 1222322 33444555555555543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.8e-11 Score=117.94 Aligned_cols=109 Identities=17% Similarity=0.038 Sum_probs=84.5
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|++|++++|.+. .+|..+..+++|++|++++|......+..+..+++|++|++++|.+....|..|.++++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46777777776554 56677888888888888888655555556778888888888888887777777888888888888
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+....+..+..+++|+.|++++|+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888665656778888888888888743
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.8e-11 Score=140.16 Aligned_cols=101 Identities=23% Similarity=0.207 Sum_probs=82.4
Q ss_pred ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCC
Q 002156 90 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNT 169 (959)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 169 (959)
.|++|+|++|.++.+|. |+.+++|++|+|++|+|+.+|..++.+++|++|+|++| .+..+| .|+.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48888888888888876 88888888888888888888888888888888888884 566677 7888888888888888
Q ss_pred Cccccc--ccccccccCCceeceEEec
Q 002156 170 DSLEEM--PLGIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 170 ~~~~~~--p~~i~~L~~L~~L~~~~~~ 194 (959)
. ++.+ |..++.|++|++|++..+.
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 7 6766 7778888888888765554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=3.8e-11 Score=115.44 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCeEEEEeecccccccccccccccCC-cccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcccccc-ccc
Q 002156 33 SENLRHLSYIPEYCDGVKRFEDLYDIQ-HLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDS-IGD 110 (959)
Q Consensus 33 ~~~~r~ls~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~ 110 (959)
+.+++++.+.++.+..+ +.+..+. +|+.|.+.++. ...+ +.+..+++|++|++++|.++.+|.. +..
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 45789999988776543 4455555 99999998865 3444 6789999999999999999999754 599
Q ss_pred cCcccEEeccCCCCcccch--hhhccccccEEeccCcchhhhhhHh----hhcccccceeecCCCCcccc
Q 002156 111 LRYLRYLNLSGTHIRALPE--SVNKLYNLHTLLLEDCRELKKLCAD----MGNLIKLHHHNNSNTDSLEE 174 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~ 174 (959)
+++|++|+|++|+|..+|. .++.+++|++|++++| .+..+|.. ++.+++|++||+++|. ..+
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~-~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK-LKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC-HHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC-HHH
Confidence 9999999999999999987 8999999999999995 67777775 8999999999999987 443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=8.6e-11 Score=113.13 Aligned_cols=110 Identities=15% Similarity=-0.042 Sum_probs=79.8
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57777777777766555556677888888888887544333334567788888888888877666666778888888888
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+.+..+..+..+++|++|++++|+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 888887555545677888888888888643
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=7.7e-11 Score=113.47 Aligned_cols=115 Identities=15% Similarity=-0.026 Sum_probs=97.4
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999988766666789999999999999988776677789999999999999965544444567899999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
+++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999886666667889999999999999886554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.6e-12 Score=126.42 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=65.4
Q ss_pred ccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhc
Q 002156 54 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNK 133 (959)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~ 133 (959)
.+..+++|+.|.+.++. ...+| .+.++++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n~-------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE-------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC-------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34556666666665543 23344 556666666666666666666666666666666666666666665 4666
Q ss_pred cccccEEeccCcchhhhhhH--hhhcccccceeecCCCC
Q 002156 134 LYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~ 170 (959)
+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 666666666663 4444443 46666666666666665
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=1.7e-10 Score=123.64 Aligned_cols=291 Identities=13% Similarity=0.040 Sum_probs=170.8
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--C
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--E 574 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~ 574 (959)
.++++++|.+++. + ....+ ..+...+++|+.|+|++|.+.. ....-+.++.++.+.+..+ .+| .
T Consensus 23 ~~~~l~~L~l~g~--i---~~~~~----~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK--L---NAEDF----RHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE--E---CHHHH----HHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecc--c---cHHHH----HHHHHhhccCeEEecCcceeEE-ecCcccccccccccccccc----ccCHHH
Confidence 4567899998862 2 11111 1122224889999999998762 1111123334555555555 334 3
Q ss_pred CcC--------CCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccc
Q 002156 575 VAL--------PSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTV 646 (959)
Q Consensus 575 ~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 646 (959)
+.. +++|+.+++.+ . ++.++...+ ..+++|+++++.++. +..++...+. +|.++..++.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF-~~~~~L~~l~l~~n~-i~~i~~~aF~---------~~~~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAF-KGCDNLKICQIRKKT-APNLLPEALA---------DSVTAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-T-CCEECTTTT-TTCTTCCEEEBCCSS-CCEECTTSSC---------TTTCEEEECT
T ss_pred hcccccccccccCCCcEEECCc-c-ccchhHHHh-hcCcccceEEcCCCC-ccccchhhhc---------CCCceEEecC
Confidence 455 88999999988 3 555655444 789999999998843 3344443332 2444444443
Q ss_pred cccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCc-eEeeccChhhH-HHHHhhcCCCC
Q 002156 647 EEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLK-SLGVFECSKLE-SIAERLDNNTS 724 (959)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~-~L~l~~~~~~~-~~~~~~~~l~~ 724 (959)
...... .....+......+|. .|+ .+.+....... .+...-....+
T Consensus 156 ~~~~~~-------~~~~~i~~~~f~~~~-------------------------~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 156 GSSDAY-------RFKNRWEHFAFIEGE-------------------------PLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TCTHHH-------HTSTTTTTSCEEESC-------------------------CCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cchhhh-------hcccccccccccccc-------------------------ccceeEEecCCCcHHHHHhhcccCccc
Confidence 211000 000011111112222 222 33333332222 22222334567
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCccc-eeee
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQ-ELRI 802 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l 802 (959)
++.+.+.+.-...........+++|+++++++|. ++.+|. .|..|++|+++++.+| +....+..|.++++|+ .+++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 7777776542211111111248999999999985 455554 6888999999999998 4444567889999999 9999
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEE
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLE 853 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 853 (959)
.+ .+...-+.+|..+++|+.+++++|...... ...|.++++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 88 666555678999999999999888533222 25678888888875
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=8.5e-11 Score=112.25 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=69.9
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccchh-hhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPES-VNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
...+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|..
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 455665554 6777888888887776 55777888888888888888777654 477888888888774 56666655
Q ss_pred hhcccccceeecCCCCcccccccccc
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPLGIG 180 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~~i~ 180 (959)
|+.+++|++|++++|. +...+.++.
T Consensus 101 ~~~l~~L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp TTTCTTCSEEECCSSC-BCTTBGGGH
T ss_pred hccccCCCEEEeCCCC-cccccccHH
Confidence 7777888888888777 555544443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=2.6e-12 Score=126.34 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=97.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhc
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGN 157 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 157 (959)
...+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.|+.+|..+..+++|++|++++| .+..+| .++.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence 3445557899999999999999999998 899999999999999999999998999999999999995 677787 7999
Q ss_pred ccccceeecCCCCccccccc--ccccccCCceeceEE
Q 002156 158 LIKLHHHNNSNTDSLEEMPL--GIGKLTCLQTLCNFV 192 (959)
Q Consensus 158 L~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~ 192 (959)
+++|++|++++|. +..+|. .++.+++|++|++..
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 9999999999998 887765 588999999986533
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=4e-10 Score=107.22 Aligned_cols=90 Identities=27% Similarity=0.319 Sum_probs=55.4
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccchh-hhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPES-VNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
...+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +..+++|++|+|++| .+..+|..
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGA 97 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHH
Confidence 344454442 5666666666666666 45566666666666666666666543 466666666666663 45555443
Q ss_pred hhcccccceeecCCCC
Q 002156 155 MGNLIKLHHHNNSNTD 170 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~ 170 (959)
|+.+++|++|++++|.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 6666666666666665
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.6e-09 Score=103.01 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=79.0
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
.+.++++++.+. .+|..+ .++|++|++++|......|..+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777665543 456555 47888888888865555566777888888888888887766666778888888888888
Q ss_pred CCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 805 GVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 805 n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|.+.+..+..+..+++|++|++++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888666666888888888888888643
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2e-09 Score=102.64 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=75.0
Q ss_pred cEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccC
Q 002156 726 EIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRG 805 (959)
Q Consensus 726 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 805 (959)
+.++++++.+ +.+|..+ .++|++|++++|...+..|..+..+++|++|++++|++.+..+..|.++++|+.|++++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566656544 5566655 378888888888655555667777888888888888776655556678888888888888
Q ss_pred CCCCCCcccCCCCCCcceEEccCCchh
Q 002156 806 VELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 806 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+.+..+..+..+++|+.|++++|+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888555555778888888888888643
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.2e-08 Score=111.27 Aligned_cols=110 Identities=12% Similarity=-0.015 Sum_probs=79.9
Q ss_pred HhhcCCCCccEEeecccCCC-----cccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccc
Q 002156 717 ERLDNNTSLEIISIGSCGNL-----KILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKG 790 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 790 (959)
.+|.+|++|+.+++.++... ..-+..|..|++|+.+++..+ +..++ ..|.+|++|+.+.+..+ +...-+.+
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 46778888888888776543 234667888999999999843 55554 46777899999999665 34444567
Q ss_pred cCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCc
Q 002156 791 LHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNI 830 (959)
Q Consensus 791 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~ 830 (959)
|.++ +|+.+++.+|......+..+..+ .+++.|.+-.+.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 8888 99999999887776555566666 478888887764
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=5.3e-08 Score=106.27 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=101.5
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++|+.+.+..+ ....-...|.++++|+++++..+ +..++.....-.+|+.+.+.++ +...-...|.++++|+.++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEE
Confidence 355566665432 22223445666666666666653 3444433222256666666432 3333345666667777777
Q ss_pred eccCCCC-----CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeec
Q 002156 802 IGRGVEL-----PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEIS 876 (959)
Q Consensus 802 l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~ 876 (959)
+.++... ..-+..|..+++|+.+++.++ +... ....|.++++|+.+.+..
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I---~~~aF~~c~~L~~l~lp~-------------------- 332 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL---GQGLLGGNRKVTQLTIPA-------------------- 332 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE---CTTTTTTCCSCCEEEECT--------------------
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE---hhhhhcCCCCccEEEECc--------------------
Confidence 7665443 223345666666777666633 1111 113455556666665533
Q ss_pred cCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCC---CCccccceeeccCChhHHHHHhhcCCCccccc
Q 002156 877 FFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKK---GLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLL 943 (959)
Q Consensus 877 ~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i 943 (959)
+++.|+. .|..+ +|+++++.++ .+..++.. +++.+++.|++-... .+.+... ..|...
T Consensus 333 ---~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 333 ---NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDF 394 (401)
T ss_dssp ---TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGG
T ss_pred ---cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhh
Confidence 4666665 67777 9999999885 45555554 345688889887643 2334433 346544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=7.1e-09 Score=112.04 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=44.3
Q ss_pred ccccccCCCCCceeEEEecC-CCCcccc-ccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhhHhh
Q 002156 79 YSILPKLFKLQRLRAFSLRG-YHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|+|+.+| ..|++|++|++|+|++| .+..+|..+
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHH
Confidence 34444 55555555555553 5555553 34555555555555555555443 33455555555555552 344444432
Q ss_pred hcccccceeecCCCC
Q 002156 156 GNLIKLHHHNNSNTD 170 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~ 170 (959)
.....|++|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 222225555555554
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.6e-07 Score=103.18 Aligned_cols=128 Identities=18% Similarity=0.097 Sum_probs=67.3
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.+..+..|+.+.+..+ ........+..+..++.+...... .....+..+.+|+.+.+.++ +...-..+|.++++|
T Consensus 248 ~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 4556666666666543 223334455666666666654431 11224556667777776554 222224456667777
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+.+++..+ +...-..+|.++.+|+.+++..+ +... ...+|.++++|+.+++..
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I---~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKI---GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEE---CTTTBTTCTTCCEEEEEG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEe---hHHHhhCCCCCCEEEECC
Confidence 77777543 33233445666677777766544 1111 113455566666666543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=5.7e-10 Score=120.65 Aligned_cols=133 Identities=15% Similarity=0.034 Sum_probs=69.4
Q ss_pred CCCceEeeccChhhHHHHHhh----c-CCCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCC----C-
Q 002156 699 PSLKSLGVFECSKLESIAERL----D-NNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEG----G- 767 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~----~- 767 (959)
+.|++|++++|.+.......+ . ..++|++|++++|.+...... ....+++|++|++++|......... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777777777655433332 2 225777777777765432211 1223556677777776432211111 1
Q ss_pred CCCCCccEEEecCCcCcCc----cccccCCCCccceeeeccCCCCCC----CcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEA----LPKGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~ 831 (959)
...++|++|++++|.+... ++..+...++|++|++++|.+... ++..+...++|++|++++|..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 1345666666666665331 233334556666666666655421 223344445566666666643
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=7.2e-07 Score=97.91 Aligned_cols=190 Identities=15% Similarity=0.065 Sum_probs=95.2
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.|.++++|+.+++..+ ....-...+..+..|+.+.+..+ ...+......+.+|+.+.+.... ...-...+.++..|
T Consensus 180 ~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCc-eecccccccccccc
Confidence 3455555555555432 21222334555555665555443 22233333444556666554332 11222344555666
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCC--cccccCCCCCceEee
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDD--MVSFPLPASLTSLEI 875 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~L~~L~l 875 (959)
+.+.+..+... .....+..+..++.+....... ....+..+.+|+.+.+.+.-.. ...|.-+.+|+.+++
T Consensus 256 ~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i-------~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV-------PEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp CEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-------CTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECC
T ss_pred eeEEcCCCcce-eeccccccccccceeccCceee-------ccccccccccccccccccccceechhhhcCCCCCCEEEe
Confidence 66666544222 2233455555565555544321 1133455566666666442110 112234456666666
Q ss_pred ccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeecc
Q 002156 876 SFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIE 923 (959)
Q Consensus 876 ~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 923 (959)
.. .++.|+. .|..+++|+++++..+ ++.+....| ..+|+++++.
T Consensus 328 p~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 328 PY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred CC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 43 3666655 6777788888887653 667766555 4567777664
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.1e-09 Score=118.33 Aligned_cols=137 Identities=13% Similarity=-0.005 Sum_probs=86.7
Q ss_pred CCCccEEeecccCCCcccCcc----cc-CCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCcccccc----
Q 002156 722 NTSLEIISIGSCGNLKILPSG----LH-NLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGL---- 791 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~----~~-~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 791 (959)
++.|+.|++++|.+....... +. ..++|++|+|++|....... .....+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999998876533222 22 23689999999986533211 122235678999999998754433333
Q ss_pred -CCCCccceeeeccCCCCC----CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 792 -HNLTSLQELRIGRGVELP----SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 792 -~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
...++|++|++++|.+.. .++..+...++|++|+|++|.............+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 346788888888887753 2333445678888888888875443332222344555677777777643
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5e-08 Score=105.33 Aligned_cols=103 Identities=20% Similarity=0.140 Sum_probs=44.0
Q ss_pred EeeccChhhHHHHHhhcCCCCccEEeecc-cCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCc
Q 002156 704 LGVFECSKLESIAERLDNNTSLEIISIGS-CGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCE 782 (959)
Q Consensus 704 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 782 (959)
++.++++.+..+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|...+..|..+..+++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444322233444 44444555555543 33333333444445555555555443333333334444444444444444
Q ss_pred CcCccccccCCCCccceeeeccCCCC
Q 002156 783 RLEALPKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 783 ~~~~~~~~~~~l~~L~~L~l~~n~~~ 808 (959)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4433333333332 444444444443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=1e-07 Score=101.87 Aligned_cols=163 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHhhcCCCCccEEeecccCC---------CcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcC
Q 002156 715 IAERLDNNTSLEIISIGSCGN---------LKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLE 785 (959)
Q Consensus 715 ~~~~~~~l~~L~~L~l~~~~~---------~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 785 (959)
+..+...+++|+.|.+.+... .+.++..+..+|+|++|+|++|... .++. + .+++|++|++..|.+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 344455677888888855322 1123344566788888888877333 2333 2 36788888888776544
Q ss_pred cccccc--CCCCccceeeeccC--CCCCC-----CcccC--CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEE
Q 002156 786 ALPKGL--HNLTSLQELRIGRG--VELPS-----LEEED--GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEI 854 (959)
Q Consensus 786 ~~~~~~--~~l~~L~~L~l~~n--~~~~~-----~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 854 (959)
.....+ ..+|+|+.|+|+.+ ...+. +...+ ..+++|+.|++++|............ ..
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~---------- 276 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SD---------- 276 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CS----------
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-Cc----------
Confidence 332333 26788888887532 11111 11111 23566666666666533221110000 01
Q ss_pred cccCCCcccccCCCCCceEeeccCCCCcc-----cccccCCCCCCcEEecCCCc
Q 002156 855 RGCDDDMVSFPLPASLTSLEISFFPNLER-----LSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 855 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 903 (959)
..++|+.|+++. +.++. ++.++..+++|++|++++|.
T Consensus 277 -----------~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 -----------ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -----------SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -----------cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 234555555554 34554 44455667888888888763
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=1.6e-05 Score=87.06 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+|.+|.+|+.+.+.+. ....-...+.++++|+.+.+.. .+..++. .|.+|.+|+.+.+..+ +...-..+|.++.
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 36788899999988653 3333356678899999999964 3555554 6778899999999765 3333356788999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+|+.+.+..+ +...-..+|.+|++|+.+++.++.... ..+....+|+.+.+..
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence 9999999654 444455678899999999999885321 2345566777776654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=1.2e-06 Score=93.71 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=37.2
Q ss_pred cccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEec
Q 002156 549 PQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISS 614 (959)
Q Consensus 549 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 614 (959)
...+..+|+|+.|.|++|..+ .++.+ ..++|++|++..|.........+....+|+|++|+|+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 334556777888888776333 23333 36778888887776433322222213577777777754
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.17 E-value=5.9e-05 Score=82.51 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+|.++++|+.+.+.. .....-...|.++.+|++++|..+ ++.+. ..|.+|.+|+.+.+..+ ....-..+|.+++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 3577888888888853 333333556788999999999754 45554 46778999999999765 3333456788999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
+|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 358 ~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 9999999887433 135667788888887655
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=3.6e-06 Score=78.21 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=52.9
Q ss_pred CccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 795 TSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 795 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
..|+.||+++|.++..--..+..+++|+.|+|++|..+++.... .+..++ ...++|++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~-----------------~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLE-----------------NLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCH-----------------HHHHHCCEEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcc-----------------cccCCCCEEE
Confidence 36777777777655433334556666666666666555443321 011100 0013566677
Q ss_pred eccCCCCccccc-ccCCCCCCcEEecCCCcCCCCC
Q 002156 875 ISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYF 908 (959)
Q Consensus 875 l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 908 (959)
+++|+.+++-.- .+..+++|++|++++|+.++..
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 777777765221 4566788888888888777653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.5e-06 Score=78.25 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=55.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--CCcC----CCCCCeEEEecCCCCcccChhhhcCCCC
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--EVAL----PSKLKKINIWHCDALKSLPEAWMCDTNS 605 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 605 (959)
.+|+.|++++|.+...--..+..+++|++|+|++|..++... .+.. .++|++|++++|..+++-..... ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 356777777776544333345678888888888887665421 2222 24678888888776655433333 4567
Q ss_pred CccEEEEecCCCCcc
Q 002156 606 SLEILTISSCHSLTY 620 (959)
Q Consensus 606 ~L~~L~l~~c~~l~~ 620 (959)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777776654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.0006 Score=74.07 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred hcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
+.++..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++. .+..|++|+.+.+.++.+...-...|.++++|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 444555555555332 11111333444555555555432 222222 34445555555555444333333445555555
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDI 826 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 826 (959)
+.+.+..+ +...-..+|.++++|+.+.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555432 22122223444444544444
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=1.4e-05 Score=80.58 Aligned_cols=103 Identities=20% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCCCceeE--EEecCCCCccccc----cccccCcccEEeccCCCCccc---chhhhccccccEEeccCcchhhhhhHhhh
Q 002156 86 FKLQRLRA--FSLRGYHIFELPD----SIGDLRYLRYLNLSGTHIRAL---PESVNKLYNLHTLLLEDCRELKKLCADMG 156 (959)
Q Consensus 86 ~~l~~Lr~--L~L~~~~i~~lp~----~~~~l~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (959)
...+.|+. ++++.|....++. ...++++|+.|+|++|+|..+ |..++.+++|++|+|++| .+..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhh
Confidence 33344444 4555554333322 224566677777777766654 345566777777777763 44444 2344
Q ss_pred ccc--ccceeecCCCCccccccc-------ccccccCCceece
Q 002156 157 NLI--KLHHHNNSNTDSLEEMPL-------GIGKLTCLQTLCN 190 (959)
Q Consensus 157 ~L~--~L~~L~l~~~~~~~~~p~-------~i~~L~~L~~L~~ 190 (959)
.++ +|++|++++|.....+|. -+..+++|+.|+.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 444 677777777763333331 1556667777654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.88 E-value=0.0004 Score=75.50 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=72.9
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l 778 (959)
.|+.+.+..+ ....-...|.++.+|+.+.+... ....-...+..+++|+.+.+.++. ++.++ ..|.+|.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence 5555555432 11122346778889999988542 333334567889999999998763 44444 46788999999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP 818 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 818 (959)
..+ +...-..+|.++++|+.+.+..+ +...-..+|.++
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 764 23333567889999999988654 332223345444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=1.5e-05 Score=76.51 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=66.6
Q ss_pred cccCCcccEEecccc-CCCCCCcccccccccCCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCcc--
Q 002156 55 LYDIQHLRTFLPVTL-SNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIRA-- 126 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-- 126 (959)
+...+.|+.|.+.++ .-.. .....+...+...+.|++|+|++|.|+. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 445667777777654 3100 0012233444566777777777777653 33455556677777777777763
Q ss_pred ---cchhhhccccccEEec--cCcchhh----hhhHhhhcccccceeecCCCC
Q 002156 127 ---LPESVNKLYNLHTLLL--EDCRELK----KLCADMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 127 ---lp~~i~~L~~L~~L~L--~~~~~~~----~lp~~i~~L~~L~~L~l~~~~ 170 (959)
+...+...+.|++|+| ++|..-. .+...+...+.|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3455666667777777 5543221 133445555677777777776
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=1.6e-05 Score=76.25 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred ccCCCCCceeEEEecCC-CCcc-----ccccccccCcccEEeccCCCCcc-----cchhhhccccccEEeccCcchhh--
Q 002156 83 PKLFKLQRLRAFSLRGY-HIFE-----LPDSIGDLRYLRYLNLSGTHIRA-----LPESVNKLYNLHTLLLEDCRELK-- 149 (959)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~-- 149 (959)
..+...+.|++|+|++| .++. +...+...++|++|+|++|.|.. +...+...+.|++|+|++|..-.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34478899999999999 8754 45567788999999999999873 45566777899999999964322
Q ss_pred --hhhHhhhcccccceeec--CCCCccccc-----ccccccccCCceeceEEe
Q 002156 150 --KLCADMGNLIKLHHHNN--SNTDSLEEM-----PLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 150 --~lp~~i~~L~~L~~L~l--~~~~~~~~~-----p~~i~~L~~L~~L~~~~~ 193 (959)
.+...+...+.|++|++ ++|. ++.- ...+...++|++|++..+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 25666788889999999 7787 5442 233555678888866433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=1.3e-05 Score=80.79 Aligned_cols=81 Identities=12% Similarity=-0.004 Sum_probs=46.7
Q ss_pred hcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCC--CccEEEecCCcCcCcccc-----
Q 002156 719 LDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA--KLMRLEIYGCERLEALPK----- 789 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~----- 789 (959)
..++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.... +. .+..+. +|++|++++|++.+.+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3567888888888887766 445556677777777777774332 21 122222 566666666665543331
Q ss_pred --ccCCCCccceee
Q 002156 790 --GLHNLTSLQELR 801 (959)
Q Consensus 790 --~~~~l~~L~~L~ 801 (959)
.+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 234455555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.97 E-value=0.0086 Score=52.85 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=38.1
Q ss_pred EEEecCCCCc--cccccccccCcccEEeccCCCCcccch-hhhccccccEEeccCc
Q 002156 93 AFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTHIRALPE-SVNKLYNLHTLLLEDC 145 (959)
Q Consensus 93 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~ 145 (959)
+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6777888877 7776554 367888888888888864 4577888888888775
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.57 E-value=0.027 Score=53.29 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=31.0
Q ss_pred cCCCCcceeeccccccccc-----cCCCCCCCCCccEEEecCCcCcCcccc----ccCCCCccceeeeccCCCC
Q 002156 744 HNLCQLQEIEIWNCGNLVS-----FPEGGLPCAKLMRLEIYGCERLEALPK----GLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 744 ~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~~~ 808 (959)
.+-+.|++|+|++|..++. +.+.+..-+.|+.|+|++|.+.+.-.. .+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456677777776422221 222233334666666666665432211 1222345555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.20 E-value=0.037 Score=52.29 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCcc-----cchhhhccccccEEeccC
Q 002156 85 LFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIRA-----LPESVNKLYNLHTLLLED 144 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~ 144 (959)
+..=+.|+.|+|++|.|.. +...+..=+.|+.|+|++|.|.. +-+.+..=+.|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3444555566666555542 22334444555666666555541 223333333455555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.90 E-value=0.078 Score=46.63 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=16.7
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+|+.|+|++|.+...-+..+..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34455555555443333334444555555555554
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=64.10 E-value=1 Score=50.90 Aligned_cols=18 Identities=6% Similarity=0.137 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHhcCceE
Q 002156 1 MHDLINDLAQWAAGEIYF 18 (959)
Q Consensus 1 mHdl~~d~a~~~~~~~~~ 18 (959)
|||+|||+|+++++++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.71 E-value=1.5e+02 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=16.4
Q ss_pred hcCCCCccEEeecccCCCcccCccccCCCCcceeeccc
Q 002156 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWN 756 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 756 (959)
|.+|++|+.+.|-.. ....-...|..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 445555555555331 1111123445555555555543
Done!