BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002159
(958 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 201/580 (34%), Positives = 302/580 (52%), Gaps = 76/580 (13%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628
+L D E+ + +T G + DL AL ++A IRK +D + + A
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED---ETIDA 439
Query: 629 KVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAP--KVPNVKWEDVGGLEDVKKS 686
+V + S+A T +D A+ +S N SAL +VP V WED+GGLEDVK+
Sbjct: 440 EVMN----SLAVTM----DDFRWALSQS---NPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 687 ILDTVQLPLLHKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745
+ + VQ P+ H D F G+ GVL YGPPG GKTLLAKA+A EC NF+S+KGPEL+
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEI 804
M+ GESE NVR+IF KAR A PCV+FFDELDS+A AR G GD GG DRV++Q+L E+
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 805 DGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL 864
DG++ + +++FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D R +LKA RK +
Sbjct: 609 DGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPV 666
Query: 865 LEDVSLYSIAKKCPPNFTGADMYALCADAWFHA-------AKRKVLXXXXXXXXXRIDQA 917
+DV L +AK F+GAD+ +C A A R+ +++
Sbjct: 667 AKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEED 725
Query: 918 DSV-VVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 956
D V + D F + +R S+S +++KYE+ + S
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++DVGG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDFVKVLRELSPS 937
+ +S+ V DDF L + +PS
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 201/580 (34%), Positives = 302/580 (52%), Gaps = 76/580 (13%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628
+L D E+ + +T G + DL AL ++A IRK +D + + A
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED---ETIDA 439
Query: 629 KVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAP--KVPNVKWEDVGGLEDVKKS 686
+V + S+A T +D A+ +S N SAL +VP V WED+GGLEDVK+
Sbjct: 440 EVMN----SLAVTM----DDFRWALSQS---NPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 687 ILDTVQLPLLHKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745
+ + VQ P+ H D F G+ GVL YGPPG GKTLLAKA+A EC NF+S+KGPEL+
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEI 804
M+ GESE NVR+IF KAR A PCV+FFDELDS+A AR G GD GG DRV++Q+L E+
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 805 DGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL 864
DG++ + +++FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D R +LKA RK +
Sbjct: 609 DGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPV 666
Query: 865 LEDVSLYSIAKKCPPNFTGADMYALCADAWFHA-------AKRKVLXXXXXXXXXRIDQA 917
+DV L +AK F+GAD+ +C A A R+ +++
Sbjct: 667 AKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEED 725
Query: 918 DSV-VVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 956
D V + D F + +R S+S +++KYE+ + S
Sbjct: 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++D+GG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDFVKVLRELSPS 937
+ +S+ V DDF L + +PS
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 189/292 (64%), Gaps = 13/292 (4%)
Query: 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLF-SSGLRKRSGVLLYGPPGTGKTLLAK 726
+VP V WED+GGLEDVK+ + + VQ P+ H D F G+ GVL YGPPG GKTLLAK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 727 AVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR-GA 785
A+A EC NF+S+KGPEL+ M+ GESE NVR+IF KAR A PCV+FFDELDS+A AR G
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GD GG DRV++Q+L E+DG++ + +++FIIGA+NRPD+IDPA+LRPGR D+L+Y+ +
Sbjct: 128 IGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL- 185
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA-------A 898
D R +LKA RK + +DV L +AK F+GAD+ +C A A
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESE 244
Query: 899 KRKVLXXXXXXXXXRIDQADSVV-VEYDDFVKVLRELSPSLSMAELKKYELL 949
R+ +++ D V + D F + +R S+S +++KYE+
Sbjct: 245 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 296
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 11/240 (4%)
Query: 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKA 727
VPNV W D+G LED+++ + + P+ + D F + GL +GVLL GPPG GKTLLAKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 728 VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 787
VA E LNF+SVKGPEL+NMY+GESE+ VR +FQ+A+++ PCVIFFDE+D+L P R S
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--SD 121
Query: 788 DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 847
G RVV+Q+L E+DGL ++ Q +FI+ A+NRPD+IDPA+LRPGR DK L+VG+
Sbjct: 122 RETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 848 VSYRERVLKALTR---KFKLLEDVSLYSIAK--KCPPNFTGADMYALCADAWFHAAKRKV 902
R +LK +T+ K L DV+L +IA +C +TGAD+ AL +A A ++++
Sbjct: 181 AD-RLAILKTITKNGTKPPLDADVNLEAIAGDLRC-DCYTGADLSALVREASICALRQEM 238
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 36/259 (13%)
Query: 381 SILAPTLCP---SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASS 437
+ILAP P L L VLL G PGCGK + + VA G++ + L+
Sbjct: 25 AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84
Query: 438 ERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497
++ A+ Q F A++ +P ++ + D S+ E + +R +
Sbjct: 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-----------ETGASVRVVNQ 133
Query: 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTE 555
E + E+ RQQV ++AA + + + P I R + +G
Sbjct: 134 LLTEMDGLEA-------------RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 556 QQRVEMLSQLLQPVSE--LTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSN 613
R+ +L + + ++ L +D E D+ + + DL ALV +A +R+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDL--RCDCYTGADLSALVREASICALRQ-- 236
Query: 614 SEVDKNEPGESDLTAKVAH 632
E+ + + G KV+H
Sbjct: 237 -EMARQKSGNEKGELKVSH 254
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 200 bits (509), Expect = 3e-51, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 661 ASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGT 719
A A+ + PNV++ED+GGLE + I + V+LPL H +LF G+ G+LLYGPPGT
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGT 62
Query: 720 GKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSL 779
GKTLLAKAVATE + F+ V G EL+ +IGE V+DIF+ A+ P +IF DE+D++
Sbjct: 63 GKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAI 122
Query: 780 APARGASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 838
A R + G + R + Q+LAE+DG D+ D+ IIGA+NRPD++DPA+LRPGRFD+
Sbjct: 123 AAKRTDALTGGDREVQRTLMQLLAEMDGF-DARGDVKIIGATNRPDILDPAILRPGRFDR 181
Query: 839 LLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAA 898
++ V D R +LK TRK L EDV+L IAK GA++ A+C +A +A
Sbjct: 182 IIEVPA-PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMT-EGCVGAELKAICTEAGMNAI 239
Query: 899 K 899
+
Sbjct: 240 R 240
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + + VA + L+ + ++ + F A+ +P+
Sbjct: 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D ++ D+ V R + AE + ++ G
Sbjct: 113 IIFIDEIDAIAAKRTDALTGGDR--------EVQRTLMQLLAEMDGFDARG--------- 155
Query: 519 ICRQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT 576
V ++ A + + L P I R F I + E+ R+E+L + ++ L D
Sbjct: 156 ----DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDV 210
Query: 577 GSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRK 611
EE K T G + +L A+ +AG N IR+
Sbjct: 211 NLEEIAK----MTEGCVGAELKAICTEAGMNAIRE 241
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++D+GG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDFVKVLRELSPS 937
+ +S+ V DDF L + +PS
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 63/293 (21%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628
+L D E+ + +T G + DL AL ++A IRK +D + + A
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED---ETIDA 439
Query: 629 KVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAP--KVPNVKWEDVGG 679
+V + S+A T +D A+ +S N SAL +VP V WED+GG
Sbjct: 440 EVMN----SLAVTM----DDFRWALSQS---NPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++D+GG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDFVKVLRELSPS 937
+ +S+ V DDF L + +PS
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 63/293 (21%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628
+L D E+ + +T G + DL AL ++A IRK +D + + A
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED---ETIDA 439
Query: 629 KVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAP--KVPNVKWEDVGG 679
+V + S+A T +D A+ +S N SAL +VP V WED+GG
Sbjct: 440 EVMN----SLAVTM----DDFRWALSQS---NPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++D+GG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDFVKVLRELSPS 937
+ +S+ V DDF L + +PS
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 63/293 (21%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628
+L D E+ + +T G + DL AL ++A IRK +D + + A
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED---ETIDA 439
Query: 629 KVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAP--KVPNVKWEDVGG 679
+V + S+A T +D A+ +S N SAL +VP V WED+GG
Sbjct: 440 EVMN----SLAVTM----DDFRWALSQS---NPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 153/257 (59%), Gaps = 6/257 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++DVGG I + V+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
E F + GPE+++ GESE N+R F++A P +IF DELD++AP R + G
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 318
Query: 791 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850
V R+VSQ+L +DGL + + ++ A+NRP+ IDPAL R GRFD+ + +G+ D +
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATG 376
Query: 851 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXX 910
R +L+ T+ KL +DV L +A + GAD+ ALC++A A ++K+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 911 XXRIDQADSVVVEYDDF 927
+ +S+ V DDF
Sbjct: 436 TIDAEVMNSLAVTMDDF 452
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
+L D E+ + +T G + DL AL ++A IRK +D
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 153/256 (59%), Gaps = 7/256 (2%)
Query: 649 LVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRK 707
L K +E S + KVP+ ++ VGGL K I + ++LP+ H +LF S G+ +
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ 181
Query: 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR 767
GV+LYGPPGTGKTLLA+AVA F+ V G EL+ YIGE + VR++F AR
Sbjct: 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA 241
Query: 768 PCVIFFDELDSLAPARGASGDSGG--VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825
P +IF DE+DS+ R G GG + R + ++L ++DG ++S+++ II A+NR D+
Sbjct: 242 PSIIFMDEIDSIGSTR-VEGSGGGDSEVQRTMLELLNQLDGF-ETSKNIKIIMATNRLDI 299
Query: 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGAD 885
+DPALLRPGR D+ + S V+ R +L+ +RK L ++L +A+K +GAD
Sbjct: 300 LDPALLRPGRIDRKIEFPPPS-VAARAEILRIHSRKMNLTRGINLRKVAEKM-NGCSGAD 357
Query: 886 MYALCADAWFHAAKRK 901
+ +C +A +A + +
Sbjct: 358 VKGVCTEAGMYALRER 373
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
V+L+G PG GK + R VA + S L+ + S + + F A+ ++P+
Sbjct: 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPS 243
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 244 IIFMDEID 251
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 144/230 (62%), Gaps = 6/230 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE 731
V ++DVGG E+ + + + V+ G R G+LL GPPGTGKTLLA+AVA E
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 732 CSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG 791
++ F + G + + +++G VRD+F +A++ PC++F DE+D++ RGA G GG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA-GLGGG 131
Query: 792 VMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 849
+R ++Q+L E+DG DS + + ++ A+NRPD++DPALLRPGRFDK + V D+
Sbjct: 132 HDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD-PPDML 189
Query: 850 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 899
R+++L+ TR L EDV+L IAK+ P F GAD+ L +A AA+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRT-PGFVGADLENLVNEAALLAAR 238
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 143/230 (62%), Gaps = 6/230 (2%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE 731
V ++DVGG E+ + + + V+ G R G+LL GPPGTG TLLA+AVA E
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 732 CSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG 791
++ F + G + + +++G VRD+F +A++ PC++F DE+D++ RGA G GG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA-GLGGG 131
Query: 792 VMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 849
+R ++Q+L E+DG DS + + ++ A+NRPD++DPALLRPGRFDK + V D+
Sbjct: 132 HDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD-PPDML 189
Query: 850 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 899
R+++L+ TR L EDV+L IAK+ P F GAD+ L +A AA+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRT-PGFVGADLENLVNEAALLAAR 238
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 171 bits (434), Expect = 2e-42, Method: Composition-based stats.
Identities = 93/228 (40%), Positives = 142/228 (62%), Gaps = 6/228 (2%)
Query: 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733
+ DV G ++ K+ + + V+ G + GVL+ GPPGTGKTLLAKA+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70
Query: 734 LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVM 793
+ F ++ G + + M++G VRD+F++A+ A PC+IF DE+D++ RGA G GG
Sbjct: 71 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA-GLGGGHD 129
Query: 794 DR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 851
+R ++QML E+DG + ++ + +I A+NRPD++DPALLRPGRFD+ + VG+ DV R
Sbjct: 130 EREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL-PDVRGR 187
Query: 852 ERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 899
E++LK R+ L D+ IA+ P F+GAD+ L +A AA+
Sbjct: 188 EQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAAR 234
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 150/239 (62%), Gaps = 11/239 (4%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAV 728
P+V + DVGG +D + + + V+LPLL + F++ G+ G+LLYGPPGTGKTL A+AV
Sbjct: 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 729 ATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR---GA 785
A F+ V G EL+ Y+GE + VR++F+ AR+ + C+IFFDE+D++ AR GA
Sbjct: 264 ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA 323
Query: 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GD+ + R + +++ ++DG D ++ ++ A+NRP+ +DPALLRPGR D+ + +
Sbjct: 324 GGDN--EVQRTMLELITQLDGF-DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL- 379
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA--AKRKV 902
D+ R + + ++ + + I++ C PN TGA++ ++C +A A A+RKV
Sbjct: 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLC-PNSTGAELRSVCTEAGMFAIRARRKV 437
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 150/244 (61%), Gaps = 9/244 (3%)
Query: 662 SALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 720
S + K P + D+GGLE + I ++V+LPL H +L+ G++ GV+LYG PGTG
Sbjct: 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTG 228
Query: 721 KTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780
KTLLAKAVA + S FL + G ELI Y+G+ + R IF+ A P ++F DE+D++
Sbjct: 229 KTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288
Query: 781 PARGASGDSGG--VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFD- 837
R S +SGG + R + ++L ++DG +D D+ +I A+N+ + +DPAL+RPGR D
Sbjct: 289 TKRYDS-NSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNKIETLDPALIRPGRIDR 346
Query: 838 KLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA 897
K+L+ N D+S ++++L T K L EDV+L ++ + +GAD+ A+C +A A
Sbjct: 347 KILF--ENPDLSTKKKILGIHTSKMNLSEDVNLETLV-TTKDDLSGADIQAMCTEAGLLA 403
Query: 898 AKRK 901
+ +
Sbjct: 404 LRER 407
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 366 NDFVPLQGDTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLG 422
+D L+ +I S+ P P + + +K V+L+G PG GK + + VA +
Sbjct: 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241
Query: 423 IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
+ L+ Q F A +P+I+ + + D
Sbjct: 242 ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 140/241 (58%), Gaps = 4/241 (1%)
Query: 662 SALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 720
S +G + P+V + DVGGL+ K+ I + V+LPL+ DL+ G+ GVLLYGPPGTG
Sbjct: 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTG 218
Query: 721 KTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780
KT+L KAVA F+ V G E ++ Y+GE + VRD+F+ AR P +IF DE+DS+A
Sbjct: 219 KTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 278
Query: 781 PAR-GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 839
R A S + R++ ++L ++DG D S ++ +I A+NR D +DPALLRPGR D+
Sbjct: 279 TKRFDAQTGSDREVQRILIELLTQMDGF-DQSTNVKVIMATNRADTLDPALLRPGRLDRK 337
Query: 840 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 899
+ D R + + K L + L S+ + + +GA + A+ +A A +
Sbjct: 338 IEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN-DSLSGAVIAAIMQEAGLRAVR 396
Query: 900 R 900
+
Sbjct: 397 K 397
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 162 bits (411), Expect = 6e-40, Method: Composition-based stats.
Identities = 88/232 (37%), Positives = 137/232 (59%), Gaps = 4/232 (1%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNV+++D+ G E+ K+ +++ V + + G + GVLL GPPGTGKTLLAKAVA
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
E + F S+ G I M++G VRD+F+ A+ P +IF DE+D++ +R A G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 790 GGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 847
G +R ++Q+LAE+DG + + ++ A+NRP+++DPAL+RPGRFD+ + V D
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD-KPD 184
Query: 848 VSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 899
+ R +LK + KL DV+L +A K GAD+ + +A A +
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVA-KLTAGLAGADLANIINEAALLAGR 235
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 30/237 (12%)
Query: 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
L K VLL G PG GK + + VA + + + ++ + F T
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFET 98
Query: 452 AQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYF 511
A+ +P+I+ + + D +G S V+ S DE E++
Sbjct: 99 AKKQAPSIIFIDEIDA--------------IGKSRAAGGVV------SGNDEREQTLNQL 138
Query: 512 PVKEIEKICRQQ--VLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQ 567
+ E++ + V+++AA + E L P + R F ++ + RVE+L ++
Sbjct: 139 -LAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197
Query: 568 PVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGES 624
V +L +D +E K T+G DL ++ +A R + EV + E+
Sbjct: 198 GV-KLANDVNLQEVAK----LTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEA 249
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 13/286 (4%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLR-KRSGVLLYGPPGTGKTLLAKAV 728
P V WED+ G+E K +I + V P+L D+F+ GLR G+LL+GPPGTGKTL+ K +
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT-GLRGPPKGILLFGPPGTGKTLIGKCI 137
Query: 729 ATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788
A++ F S+ L + ++GE EK VR +F AR +P VIF DE+DSL RG
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197
Query: 789 SGGVMDRVVSQMLAEIDGLNDSSQD-LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 847
R+ ++ L ++DG SS+D + ++GA+NRP ID A R R K LY+ +
Sbjct: 198 ESS--RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEA 253
Query: 848 VSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXX 907
+ ++ V+ ++++ L + + I ++ F+GADM LC +A +
Sbjct: 254 SARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGPIRS---LQTA 309
Query: 908 XXXXXRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQF 953
DQ + Y DF R + PS+S +L+ YE F
Sbjct: 310 DIATITPDQVRPIA--YIDFENAFRTVRPSVSPKDLELYENWNKTF 353
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 727
+ P V ++DV G E+ K+ + + V+ G R GVLL GPPG GKT LA+A
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 83
Query: 728 VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 787
VA E + F++ G + + M++G VRD+F+ A+ PC++F DE+D++ RG SG
Sbjct: 84 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG-SG 142
Query: 788 DSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GG +R ++Q+L E+DG + + ++ A+NRPD++DPALLRPGRFD+ + +
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDA- 200
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGAD 885
DV RE++L+ R L EDV L +AK+ P F GAD
Sbjct: 201 PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGAD 239
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125
Query: 459 ILLLRDFD-VFRNLVSNESLPNDQ 481
I+ + + D V R S ND+
Sbjct: 126 IVFIDEIDAVGRKRGSGVGGGNDE 149
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 727
+ P V ++DV G E+ K+ + + V+ G R GVLL GPPG GKT LA+A
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92
Query: 728 VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 787
VA E + F++ G + + M++G VRD+F+ A+ PC++F DE+D++ RG SG
Sbjct: 93 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG-SG 151
Query: 788 DSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GG +R ++Q+L E+DG + + ++ A+NRPD++DPALLRPGRFD+ + +
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDA- 209
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGAD 885
DV RE++L+ R L EDV L +AK+ P F GAD
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGAD 248
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 459 ILLLRDFD-VFRNLVSNESLPNDQ 481
I+ + + D V R S ND+
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDE 158
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 142/250 (56%), Gaps = 16/250 (6%)
Query: 650 VKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKR 708
VKAME +K P + DVGGL+ + +++ + LP+ D F G+R
Sbjct: 167 VKAMEVDEK-----------PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP 215
Query: 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARP 768
G L+YGPPGTGKTLLA+A A + + FL + P+L+ MYIGE K VRD F A+ P
Sbjct: 216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275
Query: 769 CVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827
+IF DELD++ R S SG + R + ++L ++DG + S + ++ A+NR D++D
Sbjct: 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNRVDVLD 334
Query: 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMY 887
PALLR GR D+ + + S+ S R ++L+ +RK +D++ +A+ F GA +
Sbjct: 335 PALLRSGRLDRKIEFPLPSEDS-RAQILQIHSRKMTTDDDINWQELARST-DEFNGAQLK 392
Query: 888 ALCADAWFHA 897
A+ +A A
Sbjct: 393 AVTVEAGMIA 402
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 152/278 (54%), Gaps = 28/278 (10%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730
+ ++ +GGL + + + + ++LPL + ++F G++ GVLLYGPPGTGKTLLAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 790
NF+ +++ YIGES + +R++F A+ PC+IF DE+D++ R + G S
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 791 G-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 849
+ R + ++L ++DG ++ Q I+ A+NRPD +DPALLRPGR D+ + + + ++
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 850 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXX 909
R + K T K K + + A K F GAD+ +A F A +
Sbjct: 357 -RLEIFKIHTAKVKKTGEFD-FEAAVKMSDGFNGADIRNCATEAGFFAIR---------- 404
Query: 910 XXXRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYE 947
D D + DD +K +R++ AE+KK E
Sbjct: 405 -----DDRDH--INPDDLMKAVRKV------AEVKKLE 429
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL+G PG GK + + VA +G + + ++ +++ + + F A+ + P
Sbjct: 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPC 276
Query: 459 ILLLRDFDVF 468
I+ + + D
Sbjct: 277 IIFMDEVDAI 286
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKWEDV GLE K+++ + V LP+ LF + SG+LLYGPPGTGK+ LAKAVA
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
TE + F SV +L++ ++GESEK V+ +F AR +P +IF DE+D+L RG G+S
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRG-EGES 140
Query: 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 842
R+ +++L +++G+ + SQ + ++GA+N P +D A+ R RF++ +Y+
Sbjct: 141 EASR-RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 190
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 28 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 87
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + + D
Sbjct: 88 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 152 bits (385), Expect = 7e-37, Method: Composition-based stats.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 727
+ P V ++DV G E+ K+ + + V+ G R GVLL GPPG GKT LA+A
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92
Query: 728 VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 787
VA E + F++ G + + M++G VRD+F+ A+ PC++F DE+D++ RG SG
Sbjct: 93 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG-SG 151
Query: 788 DSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GG +R ++Q+L E+DG + + ++ A+NRPD++DPALLRPGRFD+ + +
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDA- 209
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGAD 885
DV RE++L+ R L EDV L +AK+ P F GAD
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGAD 248
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 135 IVFIDEID 142
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 152 bits (385), Expect = 7e-37, Method: Composition-based stats.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 727
+ P V ++DV G E+ K+ + + V+ G R GVLL GPPG GKT LA+A
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68
Query: 728 VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 787
VA E + F++ G + + M++G VRD+F+ A+ PC++F DE+D++ RG SG
Sbjct: 69 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG-SG 127
Query: 788 DSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845
GG +R ++Q+L E+DG + + ++ A+NRPD++DPALLRPGRFD+ + +
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDA- 185
Query: 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGAD 885
DV RE++L+ R L EDV L +AK+ P F GAD
Sbjct: 186 PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGAD 224
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 111 IVFIDEID 118
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKWEDV GLE K+++ + V LP+ LF + SG+LLYGPPGTGK+ LAKAVA
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
TE + F SV +L++ ++GESEK V+ +F AR +P +IF D++D+L RG G+S
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGES 164
Query: 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 842
R+ +++L +++G+ + SQ + ++GA+N P +D A+ R RF++ +Y+
Sbjct: 165 EASR-RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 214
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKWEDV GLE K+++ + V LP+ LF + SG+LLYGPPGTGK+ LAKAVA
Sbjct: 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
TE + F SV +L++ ++GESEK V+ +F AR +P +IF D++D+L RG G+S
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGES 131
Query: 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 842
R+ +++L +++G+ + SQ + ++GA+N P +D A+ R RF++ +Y+
Sbjct: 132 EASR-RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 79 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 122
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKWEDV GLE K+++ + V LP+ LF + SG+LLYGPPGTGK+ LAKAVA
Sbjct: 31 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
TE + F SV +L++ ++GESEK V+ +F AR +P +IF D++D+L RG G+S
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGES 149
Query: 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 842
R+ +++L +++G+ + SQ + ++GA+N P +D A+ R RF++ +Y+
Sbjct: 150 EASR-RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 199
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 37 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 96
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 97 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 140
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 134/232 (57%), Gaps = 5/232 (2%)
Query: 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVAT 730
V ++DV G+ + K + + V + G + G LL GPPG GKTLLAKAVAT
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA--SGD 788
E + FL++ G E + + G VR +F++AR+ PC+++ DE+D++ R SG
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 848
S ++ ++Q+L E+DG+ ++ + ++ ++NR D++D AL+RPGR D+ +++ + + +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT-L 179
Query: 849 SYRERVLKALTRKFKLLEDVSLYSIA-KKCPPNFTGADMYALCADAWFHAAK 899
R + + + KL + + YS + P F+GAD+ +C +A HAA+
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 6/232 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKW DV GLE K+++ + V LP+ LF+ G+LL+GPPGTGK+ LAKAVA
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 730 TEC-SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788
TE + F S+ +L++ ++GESEK V+++FQ AR +P +IF DE+DSL +R S +
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--SEN 124
Query: 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 848
R+ ++ L ++ G+ + + ++GA+N P ++D A+ R RF+K +Y+ +
Sbjct: 125 ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182
Query: 849 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKR 900
+ L L + + +K ++GAD+ + DA ++
Sbjct: 183 ARAAMFKLHLGTTQNSLTEADFRELGRKT-DGYSGADISIIVRDALMQPVRK 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 6/232 (2%)
Query: 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 729
PNVKW DV GLE K+++ + V LP+ LF+ G+LL+GPPGTGK+ LAKAVA
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 188
Query: 730 TEC-SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788
TE + F S+ +L++ ++GESEK V+++FQ AR +P +IF DE+DSL +R S +
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--SEN 246
Query: 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 848
R+ ++ L ++ G+ + + ++GA+N P ++D A+ R RF+K +Y+ +
Sbjct: 247 ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 304
Query: 849 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKR 900
+ L L + + +K ++GAD+ + DA ++
Sbjct: 305 ARAAMFRLHLGSTQNSLTEADFQELGRKT-DGYSGADISIIVRDALMQPVRK 355
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 9/226 (3%)
Query: 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRS-GVLLYGPPGTGKTLLAKAVA 729
V+W D+ G + K+++ + V LP + +LF+ GLR + G+LL+GPPG GKTLLA+AVA
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFT-GLRAPAKGLLLFGPPGNGKTLLARAVA 75
Query: 730 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789
TECS FL++ L + Y+G+ EK VR +F AR +P +IF DE+DSL R +S
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 790 GGVMDRVVSQMLAEIDGL--NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 847
R+ ++ L E DGL N + ++ A+NRP +D A LR RF K +YV + D
Sbjct: 136 AS--RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSL-PD 190
Query: 848 VSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADA 893
RE +L L +K D K ++G+D+ AL DA
Sbjct: 191 EQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDA 236
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 150/278 (53%), Gaps = 15/278 (5%)
Query: 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRS-GVLLYGPPGTGKTLLAKAVAT 730
VK++D+ G + K+++ + V LP L +LF+ GLR + G+LL+GPPG GKT+LAKAVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFT-GLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDS-LAPARGASGDS 789
E + F ++ L + Y+GE EK VR +F AR +P +IF D++DS L R D+
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 790 GGVMDRVVSQMLAEIDGLNDSSQD-LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 848
R+ ++ L E DG+ + D + ++GA+NRP +D A+LR RF K +YV + ++
Sbjct: 231 S---RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEE 285
Query: 849 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXX 908
+ + L ++ L L +A+ ++G+D+ AL DA +
Sbjct: 286 TRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGP-----IRELKP 339
Query: 909 XXXXRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKY 946
+ ++ + DF + L+++ S+S L+ Y
Sbjct: 340 EQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 698 KDLFSSGLRKRSGV----LLYGPPGTGKTLLAKAVATECSLNFLS-----VKGPELINMY 748
K+ F + SGV +LYGPPG GKT A VA E + L V+ L+N
Sbjct: 63 KNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAG 122
Query: 749 IGESEKN--VRDIFQKARSA-----RPCVIFFDELDSLAPARGASGDSGGV 792
+ + N V F+ A + VI DE+D + + GD GGV
Sbjct: 123 VKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGM-----SGGDRGGV 168
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427
FR A +L+G PG GK T VA+ LG ++E
Sbjct: 77 FRAA-MLYGPPGIGKTTAAHLVAQELGYDILE 107
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGESEKN-VRDIFQK--- 762
+S +LL GP G+GKTLLA+ +A + F L Y+GE +N ++ + QK
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 763 -ARSARPCVIFFDELDSLA 780
+ A+ +++ D++D ++
Sbjct: 111 DVQKAQRGIVYIDQIDKIS 129
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGESEKN-VRDIFQK--- 762
+S +LL GP G+GKTLLA+ +A + F L Y+GE +N ++ + QK
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 763 -ARSARPCVIFFDELDSLA 780
+ A+ +++ D++D ++
Sbjct: 111 DVQKAQRGIVYIDQIDKIS 129
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEGD-I 93
Query: 771 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAA-RTIRLELPRFTLIGATTRPGLIT 152
Query: 828 -PALLRPGRFDKLLY 841
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEGD-I 93
Query: 771 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAA-RTIRLELPRFTLIGATTRPGLIT 152
Query: 828 -PALLRPGRFDKLLY 841
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DI 93
Query: 771 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA-ARTIRLELPRFTLIGATTRPGLIT 152
Query: 828 -PALLRPGRFDKLLY 841
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGESEKNVRDIFQKA--- 763
+S +LL GP G+GKTL+A+ +A + L Y+GE +N+ +A
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 764 --RSARPCVIFFDELDSLA 780
+ A+ ++F DE+D ++
Sbjct: 132 NVQKAQKGIVFIDEIDKIS 150
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 734
E+ GLE VK+ IL+ + + L K L K + L GPPG GKT LAK++A
Sbjct: 81 EEHHGLEKVKERILEYLAVQKLTKSL------KGPILCLAGPPGVGKTSLAKSIAKSLGR 134
Query: 735 NFL-----------SVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780
F+ ++G Y+G + +KA P V DE+D ++
Sbjct: 135 KFVRISLGGVRDESEIRGHR--RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMS 188
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR----SA 766
++L+GPPGTGKT LA+ +A + + + + K +R+ ++AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 767 RPCVIFFDEL 776
R ++F DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE----KNVRDIFQKARSA 766
VLL GPP +GKT LA +A E + F+ + P+ + IG SE + ++ IF A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 122
Query: 767 RPCVIFFDELDSL 779
+ + D+++ L
Sbjct: 123 QLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE----KNVRDIFQKARSA 766
VLL GPP +GKT LA +A E + F+ + P+ + IG SE + ++ IF A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 123
Query: 767 RPCVIFFDELDSL 779
+ + D+++ L
Sbjct: 124 QLSCVVVDDIERL 136
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKARSA-- 766
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 767 ---RPCVIFFDELDSLAPARGASG 787
+ ++F DE+D + SG
Sbjct: 113 AVEQNGIVFIDEIDKICKKGEYSG 136
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 770
VLL GPPG G+T LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 771 IFFDELDSLAPA 782
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVA------------TECSLNFLSVKGPELINMYIGESE 753
R+++ LL G G GKT +A+ +A +C++ L + Y G+ E
Sbjct: 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264
Query: 754 KNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD 794
K + + ++ ++F DE+ ++ GA SGG +D
Sbjct: 265 KRFKALLKQLEQDTNSILFIDEIHTII---GAGAASGGQVD 302
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 679 GLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVL---LYGPPGTGKTLLAKAVATECSL- 734
GL+ VK I +T L L+ + GL + L G PGTGKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 87
Query: 735 ------NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 775
+ +SV +L+ YIG + +++ ++A V+F DE
Sbjct: 88 GYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG---VLFIDE 131
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 679 GLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVL---LYGPPGTGKTLLAKAVATECSL- 734
GL+ VK I +T L L+ + GL + L G PGTGKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94
Query: 735 ------NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 775
+ +SV +L+ YIG + +++ ++A V+F DE
Sbjct: 95 GYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG---VLFIDE 138
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 679 GLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVL---LYGPPGTGKTLLA-KAVATECSL 734
GL+ VK I +T L L+ + GL + L G PGTGKT +A K L
Sbjct: 35 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHRL 94
Query: 735 NF------LSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 775
+ +SV +L+ YIG + +++ ++A V+F DE
Sbjct: 95 GYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAXGG---VLFIDE 138
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 682 DVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 734
D+ +DT++ H+ +F L + G++L GPPG+GKT++ SL
Sbjct: 1026 DIVIPTIDTIK----HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1074
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 682 DVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 734
D+ +DT++ H+ +F L + G++L GPPG+GKT++ SL
Sbjct: 1245 DIVIPTIDTIK----HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1293
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 41/181 (22%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 753
R ++ +L G PG GKT + + +A + +KG ++++ Y GE E
Sbjct: 52 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 111
Query: 754 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVMDRVVSQMLAEIDGLNDS 810
+ ++ + Q+ +S ++F DEL ++ A A G D+G ++ +++
Sbjct: 112 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----------- 160
Query: 811 SQDLFIIGASN----RPDLIDPALLRPGRFDKLLYVG---VNSDVSYRERVLKALTRKFK 863
+L +IGA+ R DPAL R RF +YV V +S +L+ L K++
Sbjct: 161 -GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETIS----ILRGLKEKYE 212
Query: 864 L 864
+
Sbjct: 213 V 213
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 711 VLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESEKNVRDIFQKA---RS 765
VLL GPPGTGKT LA A+A E + F + G E+ + I ++E + + F++A R
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGLRI 124
Query: 766 ARPCVIFFDELDSLAP 781
++ E+ L P
Sbjct: 125 KETKEVYEGEVTELTP 140
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 681 EDVKKSILDTVQLPLLHKDLFSSGLRKRS--GVLLYGP-PGTGKTLLAKAVATECSLNFL 737
+ + S +D LP K+ F S K ++L+ P PGTGKT +AKA+ + + + +
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77
Query: 738 SVKGPELINMYIGESEKNVRDIFQKARS--ARPCVIFFDELD 777
V G + ++ N F A S R VI DE D
Sbjct: 78 FVNGSDCKIDFVRGPLTN----FASAASFDGRQKVIVIDEFD 115
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 711 VLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESE 753
VLL GPPGTGKT LA A+A E + F G E+ + I ++E
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 663 ALGAPKVPNVKWEDVG-GLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGK 721
+L KVP+V+ E DV +DT + H D+ + L + ++L GPPG+GK
Sbjct: 1262 SLWKNKVPSVEVETHKVASPDVVIPTVDTTR----HVDVLHAWLSEHRPLILCGPPGSGK 1317
Query: 722 TLLAKAVATE------CSLNFLSVKGPELI 745
T+ + SLNF S PEL+
Sbjct: 1318 TMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 663 ALGAPKVPNVKWEDVG-GLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGK 721
+L KVP+V+ E DV +DT + H D+ + L + ++L GPPG+GK
Sbjct: 1262 SLWKNKVPSVEVETHKVASPDVVIPTVDTTR----HVDVLHAWLSEHRPLILCGPPGSGK 1317
Query: 722 TLLAKAVATE------CSLNFLSVKGPELI 745
T+ + SLNF S PEL+
Sbjct: 1318 TMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 41/187 (21%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 753
R ++ +L G PG GKT + + +A + +KG ++++ Y GE E
Sbjct: 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248
Query: 754 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVMDRVVSQMLAEIDGLNDS 810
+ ++ + Q+ +S ++F DEL ++ A A G D+G ++ +++
Sbjct: 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----------- 297
Query: 811 SQDLFIIGASN----RPDLIDPALLRPGRFDKLLYVG---VNSDVSYRERVLKALTRKFK 863
+L +IGA+ R DPAL R RF +YV V +S +L+ L K++
Sbjct: 298 -GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETIS----ILRGLKEKYE 349
Query: 864 LLEDVSL 870
+ V +
Sbjct: 350 VHHGVRI 356
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 753
R ++ +L G PG GKT + + +A + + S+KG +L+++ Y G+ E
Sbjct: 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100
Query: 754 KNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD--RVVSQMLA 802
+ ++ I ++ + A V+ F +D + GA + G +D ++ MLA
Sbjct: 101 ERLKSILKEVQDAEGQVVMF--IDEIHTVVGAGAVAEGALDAGNILKPMLA 149
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 679 GLEDVKKSILDTVQLPLLHKDLFSSGLRKRS----GVLLYGPPGTGKTLLAKAVATECSL 734
G E +KK++ ++F + +KR+ +L GP G GKT LA ++ E S
Sbjct: 33 GQESIKKNL-----------NVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSA 81
Query: 735 NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 782
N + P + E ++ I ++F DE+ L+PA
Sbjct: 82 NIKTTAAPXI------EKSGDLAAILTNLSEGD--ILFIDEIHRLSPA 121
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-----------NMYIGESEK 754
R ++ +L G PG GKT +A+ +A + N + PE++ Y GE E
Sbjct: 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFED 254
Query: 755 NVRDIFQKARSARPCVIFFD 774
++ + + R A ++F D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-----------NMYIGESEK 754
R ++ +L G PG GKT +A+ +A + N + PE++ Y GE E
Sbjct: 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFED 254
Query: 755 NVRDIFQKARSARPCVIFFD 774
++ + + R A ++F D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 699 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA----TECSLNFLSVKGPELINM 747
++ + ++ VLL G PGTGK++L +A+A TE + L PE NM
Sbjct: 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 44/154 (28%)
Query: 656 SKKRNASALGAPK-VPNVKWEDVGGLEDVKKSILDTVQ-----LPLLHKDLFSSGLRKRS 709
+KKR S L A + + W +E + LD V + +L K L S+ L
Sbjct: 8 NKKRKISKLAAEQSLAQQPW-----VEKYRPKNLDEVTAQDHAVTVLKKTLKSANL---P 59
Query: 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE----SEKNVRDIFQKARS 765
+L YGPPGTGKT A+ E + GP+L+ I E E+ + + +K ++
Sbjct: 60 HMLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKN 112
Query: 766 -AR--------------PC----VIFFDELDSLA 780
AR PC +I DE DS+
Sbjct: 113 FARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESEKNV----RDIFQKAR 764
VL+ G PGTGKT +A +A + F ++ G E+ ++ + ++E R I + +
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIK 132
Query: 765 SARPCVIFFDELDSL-APARG----ASGDSGGVMDRVVSQMLAEI 804
+ + E+D + + +G SGD+G + V Q+ A++
Sbjct: 133 AGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 177
>pdb|2JK0|A Chain A, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|B Chain B, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|C Chain C, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|D Chain D, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|E Chain E, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|F Chain F, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|G Chain G, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|H Chain H, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
Length = 325
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 250 IPECGTLESLKGS--SAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMIC 307
+PE TL ++KG ++I +E+ + L L V+ LAR DV V I ++
Sbjct: 41 VPELKTLANIKGEQVASIGSENMTSDVLLTLSK--RVNELLARSDVDGVVITHGTDTLDE 98
Query: 308 IPCRQRLHRRSDNIIYFKVVAVEPS 332
P L +SD + F V A+ P+
Sbjct: 99 SPYFLNLTVKSDKPVVF-VAAMRPA 122
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 711 VLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINMYIGESEKNVRDIF 760
+L YGPPGTGKT A+A E LN +G +++ I + + R IF
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF-ASTRQIF 107
Query: 761 QKARSARPCVIFFDELDSLAPA 782
K +I DE D++ A
Sbjct: 108 SKGFK----LIILDEADAMTNA 125
>pdb|1ZCF|A Chain A, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|B Chain B, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|C Chain C, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|D Chain D, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|E Chain E, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|F Chain F, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|G Chain G, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|H Chain H, L-Asparaginase From Erwinia Carotovora
pdb|2GVN|A Chain A, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|B Chain B, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|C Chain C, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|D Chain D, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|E Chain E, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|F Chain F, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|G Chain G, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|H Chain H, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2HLN|A Chain A, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|B Chain B, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|E Chain E, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|F Chain F, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|C Chain C, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|D Chain D, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|G Chain G, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|H Chain H, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|I Chain I, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|J Chain J, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|K Chain K, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|L Chain L, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
Length = 327
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 250 IPECGTLESLKGS--SAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMIC 307
+PE TL ++KG ++I +E+ + L L V+ LAR DV V I ++
Sbjct: 43 VPELKTLANIKGEQVASIGSENMTSDVLLTLSK--RVNELLARSDVDGVVITHGTDTLDE 100
Query: 308 IPCRQRLHRRSDNIIYFKVVAVEPS 332
P L +SD + F V A+ P+
Sbjct: 101 SPYFLNLTVKSDKPVVF-VAAMRPA 124
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSV 739
+LL G PG GKT L K +A++ L +++V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSV 739
+LL G PG GKT L K +A++ L +++V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421
D +P + ++ LA +LAP L S LL+GL G GK V R V RRL
Sbjct: 19 DVLPHREAELRRLAEVLAPALRGEKPS-----NALLYGLTGTGKTAVARLVLRRL 68
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421
D +P + D ++ +ASILAP + + ++GL G GK VV++V +L
Sbjct: 20 DELPHREDQIRKIASILAPLYREEKPN-----NIFIYGLTGTGKTAVVKFVLSKL 69
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 43/170 (25%)
Query: 711 VLLYGPPGTGKTLLAKAVATE-----CSLNFLSVKGPELINMYIGESEKNVRDIFQKARS 765
+L GPPG GKT A A+A E NFL + + + + +R+ ++
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV------IREKVKEFAR 102
Query: 766 ARPC------VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819
+P +IF DE D+L + D+ + R + SS FI+
Sbjct: 103 TKPIGGASFKIIFLDEADAL------TQDAQQALRRTMEMF---------SSNVRFILSC 147
Query: 820 SNRPDLIDPA-------LLRPGRFD----KLLYVGVNSDVSYRERVLKAL 858
+ +I+P RP R + +L Y+ N + E L+A+
Sbjct: 148 NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 197
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESEKNV----RDIFQKAR 764
VL+ G PGTGKT +A A + F ++ G E+ ++ ++E R I + +
Sbjct: 88 VLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVRIK 147
Query: 765 SARPCVIF---FDELDSLAPARGA-----SGDSGGVMDRVVSQMLAEI 804
P V+ E+D + SGD+G + V Q+ A++
Sbjct: 148 EGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 195
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 763
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 763
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 763
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 59 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 164 PQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKA 223
PQD+ E ++ ++AY++ L F+ L F Q ++ ++++ S QD
Sbjct: 490 PQDEQERIEERLAYIADHLGFSWTELARELDFTEEQIHQI-------RIENPNSLQDQSH 542
Query: 224 SLIKLGLQSVGQ 235
+L+K L+ G+
Sbjct: 543 ALLKYWLERDGK 554
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 763
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 401 LLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
+L GLPG GK T+ R +A+ LG+ +++ + E++T ++A F T
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD-----VAIEQRTGRSIADIFAT 51
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 699 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733
D S L+K GV L P G+GKT++A A + S
Sbjct: 13 DFLRSSLQKSYGVALESPTGSGKTIMALKSALQYS 47
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 401 LLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
+L GLPG GK T+ R +A+ LG+ +++ + E++T ++A F T
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDV-----AIEQRTGRSIADIFAT 51
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 699 DLFSSGLRKRSGVLLYGPPGTGKTLLAK 726
++ G+ +R+ VLL G PGTGKT+ ++
Sbjct: 14 EILHGGIPERNVVLLSGGPGTGKTIFSQ 41
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 763
+L GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 753
R ++ +L G PG GKT + + +A + +KG ++ + Y GE E
Sbjct: 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100
Query: 754 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVM 793
+ ++ + A+ ++F DEL ++ A A G D+G ++
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,912,785
Number of Sequences: 62578
Number of extensions: 1028055
Number of successful extensions: 3039
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2783
Number of HSP's gapped (non-prelim): 205
length of query: 958
length of database: 14,973,337
effective HSP length: 108
effective length of query: 850
effective length of database: 8,214,913
effective search space: 6982676050
effective search space used: 6982676050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)