Query 002159
Match_columns 958
No_of_seqs 722 out of 4596
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0736 Peroxisome assembly fa 100.0 6E-122 1E-126 1048.1 51.8 887 26-955 1-953 (953)
2 KOG0730 AAA+-type ATPase [Post 100.0 2E-104 4E-109 901.4 44.0 680 67-952 3-692 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-102 7E-107 867.5 45.4 556 366-954 190-789 (802)
4 TIGR01243 CDC48 AAA family ATP 100.0 4.9E-79 1.1E-83 751.4 64.1 704 93-955 16-731 (733)
5 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-70 2.7E-75 621.9 37.5 498 397-956 431-938 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2.1E-59 4.6E-64 555.0 38.6 474 393-949 14-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 9E-57 2E-61 480.6 22.0 254 663-936 139-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 5.3E-55 1.2E-59 468.4 19.8 296 647-955 192-490 (491)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-49 2.2E-54 446.6 21.4 280 670-954 185-524 (802)
10 KOG0739 AAA+-type ATPase [Post 100.0 1.8E-48 3.8E-53 404.6 15.6 284 666-955 124-437 (439)
11 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-43 2.6E-48 412.0 39.7 398 456-952 81-483 (489)
12 KOG0727 26S proteasome regulat 100.0 4.5E-45 9.7E-50 371.4 18.5 254 663-936 143-398 (408)
13 KOG0734 AAA+-type ATPase conta 100.0 2.2E-45 4.8E-50 405.7 16.7 243 669-934 298-541 (752)
14 KOG0728 26S proteasome regulat 100.0 6.7E-45 1.5E-49 369.7 18.0 258 666-943 138-397 (404)
15 KOG0726 26S proteasome regulat 100.0 5.8E-44 1.3E-48 369.9 14.0 251 664-934 174-426 (440)
16 KOG0652 26S proteasome regulat 100.0 1.6E-43 3.5E-48 361.5 16.2 249 667-935 163-413 (424)
17 KOG0731 AAA+-type ATPase conta 100.0 4.7E-42 1E-46 403.5 19.6 246 669-935 305-554 (774)
18 KOG0737 AAA+-type ATPase [Post 100.0 4E-42 8.7E-47 370.8 17.3 282 665-953 82-380 (386)
19 KOG0729 26S proteasome regulat 100.0 2.8E-42 6.1E-47 353.3 14.7 249 666-935 168-419 (435)
20 PTZ00454 26S protease regulato 100.0 1.9E-41 4.2E-46 386.2 21.6 261 665-946 135-397 (398)
21 KOG0741 AAA+-type ATPase [Post 100.0 3.7E-41 7.9E-46 372.1 13.4 275 669-948 213-506 (744)
22 COG0465 HflB ATP-dependent Zn 100.0 7.4E-40 1.6E-44 379.9 17.5 245 669-934 144-390 (596)
23 PRK03992 proteasome-activating 100.0 2.3E-39 5.1E-44 370.9 21.1 256 666-941 122-379 (389)
24 COG1223 Predicted ATPase (AAA+ 100.0 3.6E-39 7.9E-44 330.2 15.4 244 668-937 114-358 (368)
25 COG1222 RPT1 ATP-dependent 26S 100.0 3.9E-38 8.4E-43 337.7 23.8 239 366-658 151-394 (406)
26 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-39 4.6E-44 362.4 14.3 277 669-955 147-425 (428)
27 PTZ00361 26 proteosome regulat 100.0 1.1E-38 2.5E-43 365.4 19.3 250 666-935 174-425 (438)
28 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-37 4.1E-42 354.1 17.8 256 670-955 180-448 (693)
29 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-36 4.1E-41 358.2 21.8 249 667-936 47-297 (495)
30 TIGR03689 pup_AAA proteasome A 100.0 1.9E-36 4E-41 351.2 19.8 252 666-933 173-477 (512)
31 KOG0741 AAA+-type ATPase [Post 100.0 2E-34 4.3E-39 319.0 31.6 411 392-855 251-682 (744)
32 TIGR01242 26Sp45 26S proteasom 100.0 1.3E-35 2.7E-40 338.5 21.4 249 666-934 113-363 (364)
33 KOG0651 26S proteasome regulat 100.0 1.2E-36 2.6E-41 319.3 11.3 246 670-935 127-374 (388)
34 KOG0732 AAA+-type ATPase conta 100.0 4.6E-36 9.9E-41 360.8 15.4 265 670-940 260-531 (1080)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 6.3E-35 1.4E-39 362.6 22.0 206 702-934 1624-1877(2281)
36 CHL00176 ftsH cell division pr 100.0 1.3E-34 2.9E-39 346.2 21.2 245 669-934 177-423 (638)
37 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-33 2.9E-38 348.4 22.9 265 669-938 172-439 (733)
38 PRK10733 hflB ATP-dependent me 100.0 1.8E-33 4E-38 340.3 20.1 247 670-937 147-395 (644)
39 PLN00020 ribulose bisphosphate 100.0 1.2E-32 2.6E-37 300.6 19.2 225 703-934 143-391 (413)
40 KOG0736 Peroxisome assembly fa 100.0 3.1E-30 6.8E-35 296.9 19.7 256 364-657 670-933 (953)
41 KOG0732 AAA+-type ATPase conta 100.0 5.9E-30 1.3E-34 308.3 18.8 377 365-782 264-668 (1080)
42 KOG0738 AAA+-type ATPase [Post 100.0 8.8E-30 1.9E-34 274.5 16.7 258 365-658 211-471 (491)
43 TIGR02639 ClpA ATP-dependent C 100.0 3.8E-28 8.2E-33 299.2 29.9 427 397-904 203-718 (731)
44 KOG0652 26S proteasome regulat 100.0 3.7E-29 8E-34 256.4 17.1 240 366-659 171-415 (424)
45 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-28 3.5E-33 252.2 20.5 302 271-656 50-355 (368)
46 KOG0734 AAA+-type ATPase conta 100.0 5.2E-29 1.1E-33 276.4 17.3 208 374-610 311-523 (752)
47 KOG0726 26S proteasome regulat 100.0 4.6E-29 1E-33 259.3 12.8 237 366-656 185-426 (440)
48 PRK11034 clpA ATP-dependent Cl 100.0 5.7E-27 1.2E-31 285.2 33.0 432 398-904 208-722 (758)
49 KOG0727 26S proteasome regulat 100.0 3.2E-28 6.9E-33 248.6 17.7 220 366-611 155-379 (408)
50 KOG0729 26S proteasome regulat 100.0 2.4E-28 5.2E-33 251.1 15.6 259 338-659 158-421 (435)
51 KOG0737 AAA+-type ATPase [Post 100.0 7.4E-28 1.6E-32 260.6 17.1 263 365-656 91-359 (386)
52 KOG0728 26S proteasome regulat 99.9 2E-27 4.3E-32 242.5 16.0 236 367-656 148-388 (404)
53 KOG0731 AAA+-type ATPase conta 99.9 6.4E-27 1.4E-31 276.1 19.2 214 374-611 318-536 (774)
54 PTZ00454 26S protease regulato 99.9 1.9E-26 4.1E-31 263.3 21.0 238 366-657 145-387 (398)
55 KOG0735 AAA+-type ATPase [Post 99.9 1.5E-26 3.2E-31 264.2 18.1 219 366-614 667-891 (952)
56 KOG0739 AAA+-type ATPase [Post 99.9 6.4E-27 1.4E-31 244.2 11.8 222 365-613 132-355 (439)
57 PRK03992 proteasome-activating 99.9 2.6E-25 5.5E-30 255.1 21.0 241 366-660 131-376 (389)
58 CHL00195 ycf46 Ycf46; Provisio 99.9 2.7E-25 5.8E-30 258.9 20.3 193 390-610 252-446 (489)
59 COG0465 HflB ATP-dependent Zn 99.9 2E-25 4.4E-30 259.8 18.3 213 374-612 157-374 (596)
60 PTZ00361 26 proteosome regulat 99.9 5E-25 1.1E-29 253.1 20.1 237 366-657 183-425 (438)
61 TIGR03345 VI_ClpV1 type VI sec 99.9 8.5E-24 1.8E-28 262.3 31.0 438 398-904 209-837 (852)
62 COG0464 SpoVK ATPases of the A 99.9 1.6E-24 3.5E-29 257.2 21.2 237 366-656 242-483 (494)
63 CHL00095 clpC Clp protease ATP 99.9 1.3E-23 2.8E-28 262.0 28.6 450 397-904 200-788 (821)
64 TIGR03346 chaperone_ClpB ATP-d 99.9 9.8E-23 2.1E-27 254.7 32.3 440 398-905 195-833 (852)
65 PRK10865 protein disaggregatio 99.9 1.4E-22 3E-27 252.3 31.2 163 398-593 200-381 (857)
66 CHL00206 ycf2 Ycf2; Provisiona 99.9 8.2E-24 1.8E-28 264.4 19.6 191 393-612 1626-1861(2281)
67 TIGR01241 FtsH_fam ATP-depende 99.9 2.9E-23 6.3E-28 246.0 21.3 229 374-656 62-295 (495)
68 TIGR01242 26Sp45 26S proteasom 99.9 4.6E-23 1E-27 235.3 19.6 237 366-656 122-363 (364)
69 CHL00176 ftsH cell division pr 99.9 9.3E-23 2E-27 244.7 21.2 235 367-656 184-423 (638)
70 KOG0740 AAA+-type ATPase [Post 99.9 7.4E-23 1.6E-27 229.8 16.6 253 365-658 152-406 (428)
71 KOG0651 26S proteasome regulat 99.9 5E-23 1.1E-27 217.1 12.4 211 374-610 140-355 (388)
72 PLN00020 ribulose bisphosphate 99.9 2.5E-22 5.4E-27 220.1 17.4 198 392-611 143-354 (413)
73 TIGR03689 pup_AAA proteasome A 99.9 4.4E-22 9.6E-27 231.6 20.6 212 366-610 182-412 (512)
74 PRK10733 hflB ATP-dependent me 99.9 1.8E-21 3.8E-26 236.2 21.1 212 374-611 159-375 (644)
75 COG0542 clpA ATP-binding subun 99.9 3.5E-20 7.5E-25 221.2 28.0 448 399-904 193-761 (786)
76 PF00004 AAA: ATPase family as 99.9 1.4E-21 3E-26 189.4 12.5 131 711-844 1-132 (132)
77 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-19 3.3E-24 198.9 16.0 216 674-904 22-261 (287)
78 COG0488 Uup ATPase components 99.8 2E-20 4.4E-25 219.6 9.2 190 366-601 8-214 (530)
79 TIGR02881 spore_V_K stage V sp 99.8 2E-19 4.4E-24 196.1 15.0 216 674-903 5-244 (261)
80 KOG0744 AAA+-type ATPase [Post 99.8 1.9E-20 4.1E-25 198.5 6.6 238 674-934 141-414 (423)
81 TIGR02880 cbbX_cfxQ probable R 99.8 5.6E-19 1.2E-23 194.4 14.7 236 676-930 23-281 (284)
82 KOG0743 AAA+-type ATPase [Post 99.8 8E-19 1.7E-23 195.7 12.4 207 672-889 198-412 (457)
83 KOG0742 AAA+-type ATPase [Post 99.8 2.4E-18 5.1E-23 186.8 15.1 177 707-892 383-587 (630)
84 PF00004 AAA: ATPase family as 99.7 1E-16 2.2E-21 155.3 11.9 129 400-551 1-131 (132)
85 TIGR02639 ClpA ATP-dependent C 99.7 2.5E-16 5.4E-21 194.8 16.1 244 673-955 180-454 (731)
86 TIGR00763 lon ATP-dependent pr 99.7 3.9E-16 8.4E-21 194.1 16.3 233 675-932 320-584 (775)
87 PRK11034 clpA ATP-dependent Cl 99.6 4.2E-15 9.2E-20 181.8 17.7 222 707-954 206-457 (758)
88 KOG0742 AAA+-type ATPase [Post 99.6 6.9E-15 1.5E-19 160.1 17.1 208 374-608 362-592 (630)
89 PRK00080 ruvB Holliday junctio 99.6 1.7E-14 3.8E-19 162.6 19.4 234 672-955 22-274 (328)
90 TIGR00635 ruvB Holliday juncti 99.6 3.7E-14 8.1E-19 158.3 18.9 193 673-898 2-210 (305)
91 KOG0744 AAA+-type ATPase [Post 99.6 1.5E-14 3.3E-19 154.0 14.3 155 394-568 174-342 (423)
92 PF05496 RuvB_N: Holliday junc 99.6 1.5E-14 3.3E-19 150.1 12.2 186 672-890 21-222 (233)
93 CHL00181 cbbX CbbX; Provisiona 99.6 4.3E-14 9.4E-19 155.8 16.5 213 368-612 25-258 (287)
94 KOG0927 Predicted transporter 99.5 5.4E-14 1.2E-18 159.2 12.2 67 532-601 206-283 (614)
95 TIGR02881 spore_V_K stage V sp 99.5 5.9E-13 1.3E-17 145.4 17.8 143 395-569 40-194 (261)
96 TIGR02880 cbbX_cfxQ probable R 99.5 4.5E-13 9.8E-18 147.7 15.4 210 369-611 25-256 (284)
97 PRK10865 protein disaggregatio 99.5 9.8E-14 2.1E-18 173.5 11.0 149 706-868 197-363 (857)
98 KOG0066 eIF2-interacting prote 99.5 3.4E-13 7.3E-18 147.9 12.5 173 394-601 287-473 (807)
99 TIGR03345 VI_ClpV1 type VI sec 99.5 2.3E-13 5E-18 169.7 12.8 161 707-882 207-390 (852)
100 PRK10787 DNA-binding ATP-depen 99.4 8.3E-13 1.8E-17 163.1 16.4 228 675-933 322-581 (784)
101 PRK10636 putative ABC transpor 99.4 8.5E-14 1.8E-18 170.0 6.8 65 535-602 137-211 (638)
102 COG2255 RuvB Holliday junction 99.4 3.1E-12 6.7E-17 135.1 17.1 237 672-955 23-275 (332)
103 KOG2004 Mitochondrial ATP-depe 99.4 2.5E-13 5.5E-18 157.2 9.5 165 675-859 411-596 (906)
104 PRK05342 clpX ATP-dependent pr 99.4 1.8E-12 3.9E-17 149.1 16.3 220 677-901 73-382 (412)
105 TIGR02902 spore_lonB ATP-depen 99.4 1.3E-12 2.7E-17 155.9 14.9 212 670-933 60-331 (531)
106 CHL00095 clpC Clp protease ATP 99.4 4.5E-13 9.7E-18 167.9 11.2 184 673-883 177-382 (821)
107 KOG0062 ATPase component of AB 99.4 1.3E-12 2.8E-17 147.4 12.9 69 533-604 184-262 (582)
108 COG2256 MGS1 ATPase related to 99.4 3.5E-12 7.7E-17 140.7 16.1 177 672-891 21-211 (436)
109 PLN03073 ABC transporter F fam 99.4 5.8E-13 1.3E-17 163.6 9.7 81 507-601 315-405 (718)
110 TIGR03346 chaperone_ClpB ATP-d 99.4 9.8E-13 2.1E-17 165.2 11.6 162 706-882 192-376 (852)
111 TIGR02928 orc1/cdc6 family rep 99.4 6.2E-12 1.4E-16 143.9 15.7 204 675-900 15-257 (365)
112 TIGR00763 lon ATP-dependent pr 99.4 8.3E-12 1.8E-16 155.6 17.5 190 397-608 347-554 (775)
113 COG0466 Lon ATP-dependent Lon 99.4 4.3E-12 9.3E-17 148.3 13.6 165 675-859 323-508 (782)
114 PF05496 RuvB_N: Holliday junc 99.4 4.7E-12 1E-16 131.7 12.1 163 398-591 51-213 (233)
115 PRK07940 DNA polymerase III su 99.3 3.4E-12 7.4E-17 146.2 12.1 192 673-891 3-216 (394)
116 PRK13342 recombination factor 99.3 1.4E-11 3E-16 143.4 16.3 178 672-893 9-200 (413)
117 PRK00411 cdc6 cell division co 99.3 2.4E-11 5.3E-16 140.6 18.0 197 708-936 55-284 (394)
118 COG1123 ATPase components of v 99.3 5.1E-12 1.1E-16 146.6 12.2 173 391-604 29-222 (539)
119 KOG0743 AAA+-type ATPase [Post 99.3 2.2E-11 4.7E-16 136.8 16.4 197 371-600 205-412 (457)
120 TIGR00382 clpX endopeptidase C 99.3 1.2E-11 2.5E-16 141.7 14.4 191 708-901 116-388 (413)
121 PRK12323 DNA polymerase III su 99.3 6.3E-12 1.4E-16 148.2 11.3 186 670-894 11-230 (700)
122 PRK14962 DNA polymerase III su 99.3 1.9E-11 4.1E-16 143.2 14.7 170 670-876 9-207 (472)
123 PF05673 DUF815: Protein of un 99.3 4.2E-11 9.1E-16 126.2 15.4 170 668-867 20-215 (249)
124 TIGR00362 DnaA chromosomal rep 99.3 4.6E-11 9.9E-16 138.8 17.3 171 708-897 136-318 (405)
125 PRK07003 DNA polymerase III su 99.3 3.7E-11 8E-16 143.4 16.3 186 670-894 11-225 (830)
126 PRK14961 DNA polymerase III su 99.3 5E-11 1.1E-15 136.3 16.8 185 671-894 12-225 (363)
127 PRK00149 dnaA chromosomal repl 99.3 4.9E-11 1.1E-15 140.3 16.5 169 709-897 149-330 (450)
128 TIGR02903 spore_lon_C ATP-depe 99.3 2.3E-10 4.9E-15 138.7 22.4 224 671-935 150-431 (615)
129 TIGR00390 hslU ATP-dependent p 99.3 3.3E-11 7.1E-16 136.1 13.2 144 707-855 46-342 (441)
130 COG2256 MGS1 ATPase related to 99.3 3.4E-11 7.4E-16 133.0 12.7 119 399-564 50-174 (436)
131 KOG1051 Chaperone HSP104 and r 99.3 1.3E-10 2.8E-15 141.7 18.6 139 398-568 209-365 (898)
132 PRK14956 DNA polymerase III su 99.3 3E-11 6.5E-16 139.6 12.5 182 671-891 14-224 (484)
133 PRK04195 replication factor C 99.3 3.5E-11 7.6E-16 142.7 13.4 190 669-895 8-205 (482)
134 PRK11147 ABC transporter ATPas 99.2 1.1E-11 2.4E-16 151.8 8.8 58 542-602 151-218 (635)
135 PRK12402 replication factor C 99.2 6.4E-11 1.4E-15 133.9 14.4 189 671-896 11-230 (337)
136 PRK00080 ruvB Holliday junctio 99.2 2.3E-10 4.9E-15 129.3 18.3 176 396-603 50-225 (328)
137 COG2255 RuvB Holliday junction 99.2 5.9E-11 1.3E-15 125.5 12.2 163 398-591 53-215 (332)
138 PRK05201 hslU ATP-dependent pr 99.2 3.5E-11 7.6E-16 136.0 11.0 173 677-855 17-344 (443)
139 PLN03025 replication factor C 99.2 5E-11 1.1E-15 134.1 11.5 180 670-892 8-200 (319)
140 PRK14949 DNA polymerase III su 99.2 3.1E-10 6.7E-15 138.1 17.3 191 670-894 11-225 (944)
141 TIGR00635 ruvB Holliday juncti 99.2 8.4E-10 1.8E-14 123.3 19.5 176 397-604 30-205 (305)
142 PRK06893 DNA replication initi 99.2 2.4E-10 5.2E-15 122.4 14.4 158 709-891 40-205 (229)
143 PHA02544 44 clamp loader, smal 99.2 1.1E-10 2.4E-15 131.0 12.4 159 669-860 15-174 (316)
144 COG0466 Lon ATP-dependent Lon 99.2 2.2E-10 4.8E-15 134.3 14.9 149 398-566 351-508 (782)
145 PRK06645 DNA polymerase III su 99.2 1.7E-10 3.6E-15 135.8 14.0 196 669-897 15-237 (507)
146 PRK14960 DNA polymerase III su 99.2 1.1E-10 2.4E-15 138.2 12.4 185 671-894 11-224 (702)
147 PRK14086 dnaA chromosomal repl 99.2 5.3E-10 1.1E-14 132.6 18.1 167 709-894 315-493 (617)
148 PRK07994 DNA polymerase III su 99.2 2.1E-10 4.6E-15 137.6 14.0 184 671-893 12-224 (647)
149 TIGR02397 dnaX_nterm DNA polym 99.2 2.5E-10 5.5E-15 130.1 14.1 186 670-894 9-223 (355)
150 PRK12422 chromosomal replicati 99.1 8.6E-10 1.9E-14 128.7 18.1 192 709-934 142-343 (445)
151 PRK13341 recombination factor 99.1 3.4E-10 7.4E-15 138.5 14.8 180 672-894 25-222 (725)
152 TIGR02640 gas_vesic_GvpN gas v 99.1 3.3E-10 7.2E-15 123.8 13.3 135 706-859 19-198 (262)
153 PRK14088 dnaA chromosomal repl 99.1 5.7E-10 1.2E-14 130.4 16.0 167 709-894 131-310 (440)
154 PRK05563 DNA polymerase III su 99.1 4.9E-10 1.1E-14 134.4 15.7 185 671-894 12-225 (559)
155 KOG0989 Replication factor C, 99.1 1.2E-10 2.5E-15 124.6 9.1 180 671-891 32-229 (346)
156 PRK14963 DNA polymerase III su 99.1 3.3E-10 7.2E-15 133.9 13.8 185 669-892 8-220 (504)
157 PTZ00112 origin recognition co 99.1 7.4E-10 1.6E-14 132.6 16.1 162 711-890 784-979 (1164)
158 cd00009 AAA The AAA+ (ATPases 99.1 3.7E-10 8E-15 110.0 11.3 122 707-843 18-150 (151)
159 KOG2004 Mitochondrial ATP-depe 99.1 5.3E-10 1.2E-14 130.2 13.9 154 394-567 435-597 (906)
160 PRK14958 DNA polymerase III su 99.1 2.4E-10 5.2E-15 135.4 11.2 186 670-894 11-225 (509)
161 PRK08691 DNA polymerase III su 99.1 4.1E-10 8.8E-15 134.7 12.9 193 670-895 11-226 (709)
162 PRK15064 ABC transporter ATP-b 99.1 6.5E-11 1.4E-15 142.3 5.8 65 535-602 143-217 (530)
163 PRK07764 DNA polymerase III su 99.1 5.7E-10 1.2E-14 138.1 14.0 184 670-892 10-224 (824)
164 PRK14951 DNA polymerase III su 99.1 5.7E-10 1.2E-14 133.8 13.5 185 671-894 12-230 (618)
165 PRK07133 DNA polymerase III su 99.1 2.1E-09 4.6E-14 129.8 18.1 190 670-893 13-223 (725)
166 PRK14964 DNA polymerase III su 99.1 4.9E-10 1.1E-14 131.0 12.0 187 670-895 8-223 (491)
167 KOG2028 ATPase related to the 99.1 1.9E-09 4.1E-14 116.9 15.4 120 709-857 163-292 (554)
168 PRK05896 DNA polymerase III su 99.1 1.5E-09 3.3E-14 128.7 16.0 183 671-892 12-223 (605)
169 TIGR03420 DnaA_homol_Hda DnaA 99.1 1.7E-09 3.6E-14 115.3 14.5 166 706-898 36-210 (226)
170 PRK10938 putative molybdenum t 99.1 7.3E-11 1.6E-15 140.6 3.8 60 540-602 128-200 (490)
171 TIGR02928 orc1/cdc6 family rep 99.0 1.3E-08 2.9E-13 116.5 21.9 199 374-609 22-255 (365)
172 PRK14970 DNA polymerase III su 99.0 1.7E-09 3.6E-14 124.1 14.5 190 670-892 12-212 (367)
173 PRK08084 DNA replication initi 99.0 3.3E-09 7.1E-14 114.1 15.8 158 708-892 45-212 (235)
174 PRK14969 DNA polymerase III su 99.0 7.6E-10 1.6E-14 131.9 11.8 191 671-894 12-225 (527)
175 PRK14959 DNA polymerase III su 99.0 1.1E-09 2.3E-14 130.6 12.9 170 670-876 11-209 (624)
176 PRK10787 DNA-binding ATP-depen 99.0 2.5E-09 5.5E-14 132.5 16.6 193 396-609 348-556 (784)
177 PRK14952 DNA polymerase III su 99.0 1.5E-09 3.2E-14 129.8 14.1 183 671-892 9-222 (584)
178 PRK14957 DNA polymerase III su 99.0 1.6E-09 3.5E-14 128.3 13.7 185 671-894 12-225 (546)
179 COG2607 Predicted ATPase (AAA+ 99.0 6.2E-09 1.3E-13 108.0 15.8 171 666-866 51-246 (287)
180 TIGR01650 PD_CobS cobaltochela 99.0 2.1E-09 4.5E-14 119.1 12.5 144 398-567 65-234 (327)
181 PRK14965 DNA polymerase III su 99.0 4E-09 8.7E-14 127.2 16.1 183 670-891 11-222 (576)
182 TIGR01650 PD_CobS cobaltochela 99.0 3.2E-09 7E-14 117.5 13.9 143 704-860 60-234 (327)
183 PRK00440 rfc replication facto 99.0 2.4E-09 5.2E-14 120.1 13.1 180 670-892 12-203 (319)
184 PRK13407 bchI magnesium chelat 99.0 2.6E-09 5.6E-14 119.8 13.2 161 671-859 4-216 (334)
185 PRK09700 D-allose transporter 99.0 1.1E-10 2.3E-15 139.8 2.2 57 541-602 139-210 (510)
186 PRK10762 D-ribose transporter 99.0 2.1E-10 4.6E-15 136.9 4.6 33 701-733 271-303 (501)
187 PRK14953 DNA polymerase III su 99.0 2.2E-09 4.8E-14 126.5 12.8 191 670-893 11-224 (486)
188 PRK14087 dnaA chromosomal repl 99.0 5.7E-09 1.2E-13 122.3 16.1 171 708-898 141-328 (450)
189 PRK14956 DNA polymerase III su 99.0 5.7E-09 1.2E-13 120.9 15.7 157 397-602 40-224 (484)
190 PRK00149 dnaA chromosomal repl 99.0 4.7E-09 1E-13 123.6 15.4 156 398-591 149-314 (450)
191 PRK04195 replication factor C 99.0 9.9E-09 2.1E-13 121.8 18.0 176 374-604 21-203 (482)
192 PF07728 AAA_5: AAA domain (dy 99.0 3.1E-10 6.8E-15 111.6 4.4 110 710-836 1-139 (139)
193 PRK14962 DNA polymerase III su 99.0 6.2E-09 1.3E-13 122.2 16.0 148 396-591 35-210 (472)
194 PRK13549 xylose transporter AT 99.0 1.1E-10 2.4E-15 139.5 1.4 32 702-733 282-313 (506)
195 smart00382 AAA ATPases associa 99.0 2.2E-09 4.7E-14 103.5 10.2 122 708-844 2-146 (148)
196 PRK15134 microcin C ABC transp 99.0 4E-10 8.7E-15 135.5 6.1 59 541-602 150-222 (529)
197 PRK08727 hypothetical protein; 99.0 1.5E-08 3.3E-13 108.8 17.6 143 709-877 42-194 (233)
198 PRK11819 putative ABC transpor 99.0 1.6E-09 3.4E-14 131.0 11.2 58 542-602 158-225 (556)
199 TIGR03269 met_CoM_red_A2 methy 99.0 4.8E-10 1E-14 134.5 6.6 59 541-602 162-234 (520)
200 PRK08903 DnaA regulatory inact 99.0 7.6E-09 1.6E-13 110.6 15.1 177 705-932 39-224 (227)
201 TIGR00362 DnaA chromosomal rep 99.0 7.1E-09 1.5E-13 120.5 16.1 156 398-591 137-302 (405)
202 PRK11331 5-methylcytosine-spec 99.0 3.4E-09 7.4E-14 121.4 13.0 122 706-843 192-356 (459)
203 PRK06305 DNA polymerase III su 99.0 3.4E-09 7.3E-14 124.2 13.3 169 671-876 13-211 (451)
204 PRK15439 autoinducer 2 ABC tra 99.0 2.9E-10 6.3E-15 136.0 4.5 59 541-602 134-205 (510)
205 COG1474 CDC6 Cdc6-related prot 99.0 1.6E-08 3.4E-13 115.1 18.0 176 708-901 42-249 (366)
206 COG0542 clpA ATP-binding subun 99.0 2E-09 4.2E-14 130.0 11.0 152 706-870 189-357 (786)
207 PRK00411 cdc6 cell division co 99.0 5E-08 1.1E-12 113.0 22.4 194 375-608 38-262 (394)
208 PRK06647 DNA polymerase III su 99.0 3.5E-09 7.6E-14 126.7 12.9 184 670-892 11-223 (563)
209 PRK14948 DNA polymerase III su 99.0 1.7E-08 3.7E-13 122.2 18.7 175 670-876 11-211 (620)
210 PF07724 AAA_2: AAA domain (Cd 98.9 1.4E-09 3E-14 111.0 7.8 114 707-824 2-131 (171)
211 PRK13342 recombination factor 98.9 1.8E-08 3.9E-13 117.4 18.1 146 398-591 37-188 (413)
212 TIGR02640 gas_vesic_GvpN gas v 98.9 9.8E-09 2.1E-13 112.3 14.7 146 397-566 21-198 (262)
213 PHA02544 44 clamp loader, smal 98.9 6.6E-09 1.4E-13 116.7 13.7 131 397-567 43-174 (316)
214 COG4172 ABC-type uncharacteriz 98.9 1.5E-08 3.3E-13 111.9 15.9 175 392-608 31-229 (534)
215 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 2.7E-09 5.9E-14 128.9 10.5 58 542-602 156-223 (552)
216 PTZ00112 origin recognition co 98.9 2.9E-08 6.3E-13 119.3 18.8 157 374-568 762-951 (1164)
217 TIGR00764 lon_rel lon-related 98.9 5.4E-09 1.2E-13 126.5 12.9 87 668-768 11-107 (608)
218 PRK11288 araG L-arabinose tran 98.9 3.4E-10 7.4E-15 135.2 2.3 32 702-733 273-304 (501)
219 TIGR02633 xylG D-xylose ABC tr 98.9 6.4E-10 1.4E-14 132.8 4.5 32 702-733 280-311 (500)
220 PRK08451 DNA polymerase III su 98.9 6.3E-09 1.4E-13 122.8 12.6 189 670-897 9-226 (535)
221 PRK14955 DNA polymerase III su 98.9 5.1E-09 1.1E-13 121.2 11.3 189 670-892 11-231 (397)
222 PRK10982 galactose/methyl gala 98.9 5.6E-10 1.2E-14 133.0 3.3 32 702-733 268-299 (491)
223 PRK06893 DNA replication initi 98.9 1.4E-08 3E-13 108.9 13.6 148 398-591 40-195 (229)
224 COG1245 Predicted ATPase, RNas 98.9 1E-08 2.2E-13 114.7 12.8 162 395-604 98-280 (591)
225 PRK07003 DNA polymerase III su 98.9 4.8E-08 1E-12 117.3 19.4 165 373-593 22-214 (830)
226 PRK14954 DNA polymerase III su 98.9 3E-08 6.5E-13 119.5 17.9 188 670-891 11-230 (620)
227 PRK05642 DNA replication initi 98.9 2.6E-08 5.7E-13 107.0 15.5 157 708-892 45-211 (234)
228 PRK09111 DNA polymerase III su 98.9 1.1E-08 2.3E-13 123.1 13.8 190 671-893 20-237 (598)
229 PRK06645 DNA polymerase III su 98.9 4.2E-08 9E-13 115.8 18.3 165 397-604 43-233 (507)
230 COG0714 MoxR-like ATPases [Gen 98.9 7E-09 1.5E-13 117.2 11.2 138 704-860 39-204 (329)
231 TIGR00390 hslU ATP-dependent p 98.9 1.8E-08 3.8E-13 114.3 14.1 58 395-452 45-104 (441)
232 TIGR00678 holB DNA polymerase 98.9 1.8E-08 3.8E-13 104.6 12.9 139 708-876 14-180 (188)
233 PRK10261 glutathione transport 98.9 5.3E-09 1.1E-13 128.0 10.2 60 540-602 161-234 (623)
234 PRK12323 DNA polymerase III su 98.9 2.2E-08 4.9E-13 118.7 15.0 172 373-601 22-226 (700)
235 cd00009 AAA The AAA+ (ATPases 98.9 1.9E-08 4.2E-13 97.8 12.3 124 397-551 19-150 (151)
236 PRK06620 hypothetical protein; 98.9 3.5E-08 7.5E-13 104.5 14.8 142 709-892 45-192 (214)
237 TIGR02902 spore_lonB ATP-depen 98.9 2.3E-08 4.9E-13 119.7 15.0 187 397-609 86-313 (531)
238 COG1219 ClpX ATP-dependent pro 98.9 1.2E-08 2.7E-13 109.4 11.2 126 677-807 63-203 (408)
239 PRK05342 clpX ATP-dependent pr 98.9 3E-08 6.5E-13 114.4 15.4 75 397-471 108-188 (412)
240 PRK14961 DNA polymerase III su 98.9 5.8E-08 1.3E-12 111.2 17.7 156 397-601 38-221 (363)
241 TIGR03420 DnaA_homol_Hda DnaA 98.9 5.1E-08 1.1E-12 103.9 16.1 162 396-605 37-206 (226)
242 TIGR00382 clpX endopeptidase C 98.9 3.3E-08 7.3E-13 113.5 15.4 76 397-472 116-197 (413)
243 PRK14088 dnaA chromosomal repl 98.9 2.6E-08 5.6E-13 116.6 14.8 156 398-591 131-297 (440)
244 PRK14960 DNA polymerase III su 98.9 3.9E-08 8.5E-13 116.9 16.3 171 374-601 22-220 (702)
245 PRK12422 chromosomal replicati 98.8 5.1E-08 1.1E-12 113.9 16.9 156 398-591 142-305 (445)
246 PHA02244 ATPase-like protein 98.8 4.2E-08 9.1E-13 109.8 14.9 129 704-846 115-262 (383)
247 PRK13409 putative ATPase RIL; 98.8 2.3E-09 5.1E-14 129.6 5.2 59 541-602 206-276 (590)
248 PRK07940 DNA polymerase III su 98.8 1E-07 2.2E-12 109.6 18.2 183 373-602 11-216 (394)
249 PRK14964 DNA polymerase III su 98.8 8.8E-08 1.9E-12 112.3 17.6 160 396-604 34-221 (491)
250 PRK14950 DNA polymerase III su 98.8 2E-08 4.2E-13 121.8 12.6 189 670-891 11-223 (585)
251 PF00308 Bac_DnaA: Bacterial d 98.8 2.9E-08 6.4E-13 105.5 12.4 165 709-892 35-211 (219)
252 PLN03025 replication factor C 98.8 4.3E-08 9.4E-13 110.3 14.3 153 399-603 36-200 (319)
253 TIGR03015 pepcterm_ATPase puta 98.8 1.8E-07 3.9E-12 102.4 18.8 196 704-935 38-267 (269)
254 PRK05201 hslU ATP-dependent pr 98.8 3.9E-08 8.6E-13 111.6 13.6 56 397-452 50-107 (443)
255 COG1124 DppF ABC-type dipeptid 98.8 9.5E-09 2.1E-13 107.5 7.8 171 386-604 22-209 (252)
256 PRK12402 replication factor C 98.8 9.4E-08 2E-12 108.1 16.5 160 399-604 38-227 (337)
257 PRK14958 DNA polymerase III su 98.8 1.1E-07 2.4E-12 112.8 17.6 175 373-604 22-224 (509)
258 PRK08903 DnaA regulatory inact 98.8 4.6E-07 1E-11 96.9 20.8 143 396-591 41-191 (227)
259 COG1224 TIP49 DNA helicase TIP 98.8 2.4E-07 5.2E-12 101.0 18.1 49 701-749 58-108 (450)
260 PRK14086 dnaA chromosomal repl 98.8 5E-08 1.1E-12 116.0 14.1 154 399-591 316-480 (617)
261 PRK07994 DNA polymerase III su 98.8 9.6E-08 2.1E-12 115.1 16.7 148 397-592 38-213 (647)
262 COG1125 OpuBA ABC-type proline 98.8 1.3E-08 2.9E-13 106.5 8.1 174 377-605 14-204 (309)
263 PF05673 DUF815: Protein of un 98.8 1.7E-07 3.8E-12 99.1 16.6 181 375-601 35-242 (249)
264 TIGR02030 BchI-ChlI magnesium 98.8 5E-08 1.1E-12 109.7 12.8 155 674-858 3-218 (337)
265 PF07728 AAA_5: AAA domain (dy 98.8 6.9E-09 1.5E-13 102.0 5.3 123 399-544 1-139 (139)
266 TIGR02442 Cob-chelat-sub cobal 98.8 4.1E-08 8.8E-13 120.0 13.0 154 674-858 3-213 (633)
267 smart00382 AAA ATPases associa 98.8 6.9E-08 1.5E-12 92.9 12.2 128 397-553 2-147 (148)
268 PRK08084 DNA replication initi 98.8 9E-08 2E-12 103.0 14.3 147 398-591 46-201 (235)
269 KOG1969 DNA replication checkp 98.7 1.2E-07 2.6E-12 111.4 15.4 169 706-900 324-518 (877)
270 KOG2028 ATPase related to the 98.7 2.2E-07 4.8E-12 101.2 16.2 120 398-564 163-292 (554)
271 PRK13341 recombination factor 98.7 7.5E-08 1.6E-12 118.2 14.1 123 398-567 53-182 (725)
272 PRK05563 DNA polymerase III su 98.7 3.6E-07 7.9E-12 109.9 19.7 173 373-602 22-222 (559)
273 PRK14951 DNA polymerase III su 98.7 2.9E-07 6.3E-12 110.8 18.7 172 372-601 21-226 (618)
274 PRK14971 DNA polymerase III su 98.7 7.7E-08 1.7E-12 116.5 13.8 183 671-892 13-225 (614)
275 PRK14949 DNA polymerase III su 98.7 2.7E-07 5.9E-12 113.0 17.8 163 396-601 37-221 (944)
276 CHL00081 chlI Mg-protoporyphyr 98.7 3.9E-08 8.5E-13 110.6 10.0 164 669-859 11-232 (350)
277 PF00308 Bac_DnaA: Bacterial d 98.7 1.5E-07 3.2E-12 100.1 13.4 153 399-590 36-199 (219)
278 PRK08727 hypothetical protein; 98.7 2.1E-07 4.5E-12 100.0 14.3 151 398-600 42-201 (233)
279 COG2812 DnaX DNA polymerase II 98.7 2.8E-08 6E-13 116.1 7.7 194 670-896 11-227 (515)
280 COG1118 CysA ABC-type sulfate/ 98.7 2.4E-08 5.1E-13 107.4 6.5 164 392-602 23-203 (345)
281 PRK08691 DNA polymerase III su 98.7 2.1E-07 4.6E-12 111.8 15.2 173 374-603 23-223 (709)
282 PRK06620 hypothetical protein; 98.7 1.2E-07 2.6E-12 100.5 11.5 132 398-590 45-180 (214)
283 PHA02244 ATPase-like protein 98.7 2E-07 4.4E-12 104.4 13.8 129 397-556 119-264 (383)
284 TIGR00368 Mg chelatase-related 98.7 2.5E-07 5.3E-12 109.4 15.2 140 673-844 190-390 (499)
285 PRK14963 DNA polymerase III su 98.7 3.7E-07 8.1E-12 108.2 16.5 162 374-591 21-209 (504)
286 PRK09112 DNA polymerase III su 98.7 1.8E-07 4E-12 106.1 13.2 189 671-893 19-244 (351)
287 TIGR02397 dnaX_nterm DNA polym 98.7 5E-07 1.1E-11 103.1 16.9 148 396-591 35-210 (355)
288 COG0714 MoxR-like ATPases [Gen 98.7 1.2E-07 2.5E-12 107.4 11.6 142 398-565 44-202 (329)
289 COG1120 FepC ABC-type cobalami 98.7 1.5E-08 3.2E-13 108.8 4.0 172 377-602 15-204 (258)
290 PRK09087 hypothetical protein; 98.6 6.5E-07 1.4E-11 95.7 16.3 143 709-890 45-193 (226)
291 KOG0989 Replication factor C, 98.6 2.8E-07 6.1E-12 99.1 13.3 152 398-591 58-222 (346)
292 PRK05642 DNA replication initi 98.6 2.3E-07 5.1E-12 99.7 12.9 147 398-591 46-200 (234)
293 COG5271 MDN1 AAA ATPase contai 98.6 4.5E-07 9.8E-12 112.2 16.3 141 397-566 888-1047(4600)
294 PRK13531 regulatory ATPase Rav 98.6 4.3E-08 9.3E-13 113.4 7.4 139 705-858 36-193 (498)
295 KOG0745 Putative ATP-dependent 98.6 1.3E-07 2.8E-12 105.2 10.6 98 708-807 226-332 (564)
296 COG0488 Uup ATPase components 98.6 1.5E-08 3.2E-13 120.0 3.4 154 388-604 339-503 (530)
297 PRK14957 DNA polymerase III su 98.6 5.3E-07 1.1E-11 107.3 16.1 147 397-591 38-212 (546)
298 PRK05896 DNA polymerase III su 98.6 5.1E-07 1.1E-11 107.5 15.9 147 397-591 38-212 (605)
299 PRK05564 DNA polymerase III su 98.6 2.5E-07 5.3E-12 104.0 12.7 155 673-858 2-164 (313)
300 PRK04132 replication factor C 98.6 3.9E-07 8.5E-12 112.5 15.3 169 670-876 538-720 (846)
301 COG0470 HolB ATPase involved i 98.6 1.5E-07 3.3E-12 105.7 10.9 113 710-843 26-166 (325)
302 PRK14969 DNA polymerase III su 98.6 4.5E-07 9.7E-12 108.4 15.3 159 396-603 37-223 (527)
303 PRK14952 DNA polymerase III su 98.6 1E-06 2.3E-11 105.7 18.4 146 373-570 19-194 (584)
304 PRK05707 DNA polymerase III su 98.6 5E-07 1.1E-11 101.6 14.7 132 707-858 21-177 (328)
305 PF07726 AAA_3: ATPase family 98.6 3.4E-08 7.4E-13 94.4 4.2 105 710-836 1-129 (131)
306 PRK07133 DNA polymerase III su 98.6 7.3E-07 1.6E-11 108.2 16.3 169 373-591 24-211 (725)
307 COG1474 CDC6 Cdc6-related prot 98.6 3.2E-06 7E-11 96.4 20.6 158 371-567 21-204 (366)
308 TIGR00678 holB DNA polymerase 98.6 1.6E-06 3.4E-11 90.0 16.6 144 395-591 12-183 (188)
309 COG0593 DnaA ATPase involved i 98.6 1.1E-06 2.4E-11 100.1 16.5 171 707-897 112-294 (408)
310 PRK14959 DNA polymerase III su 98.6 9.4E-07 2E-11 105.8 16.6 146 398-591 39-212 (624)
311 TIGR02031 BchD-ChlD magnesium 98.6 7.8E-07 1.7E-11 107.7 15.9 137 709-860 17-175 (589)
312 PRK07764 DNA polymerase III su 98.6 1.6E-06 3.4E-11 107.9 18.7 147 397-591 37-213 (824)
313 COG1116 TauB ABC-type nitrate/ 98.6 3.2E-08 6.9E-13 104.5 3.3 158 383-601 22-195 (248)
314 PRK09087 hypothetical protein; 98.6 8.1E-07 1.8E-11 94.9 13.8 137 398-590 45-186 (226)
315 PRK00440 rfc replication facto 98.5 1.6E-06 3.5E-11 97.2 16.7 152 399-602 40-202 (319)
316 TIGR02903 spore_lon_C ATP-depe 98.5 2.7E-06 5.9E-11 103.6 19.4 158 398-569 176-369 (615)
317 PRK14965 DNA polymerase III su 98.5 6.6E-07 1.4E-11 108.2 14.1 161 374-591 23-212 (576)
318 PRK14948 DNA polymerase III su 98.5 1.2E-06 2.5E-11 106.5 16.0 168 374-591 23-214 (620)
319 PRK06647 DNA polymerase III su 98.5 2E-06 4.4E-11 103.3 17.6 173 373-602 22-222 (563)
320 COG2812 DnaX DNA polymerase II 98.5 9.7E-07 2.1E-11 103.3 14.3 182 373-605 22-225 (515)
321 PRK14953 DNA polymerase III su 98.5 2.2E-06 4.8E-11 101.4 17.3 153 397-591 38-212 (486)
322 TIGR02974 phageshock_pspF psp 98.5 6E-07 1.3E-11 101.3 12.0 172 707-897 21-233 (329)
323 smart00350 MCM minichromosome 98.5 5.4E-07 1.2E-11 107.6 12.2 135 708-861 236-402 (509)
324 PRK09862 putative ATP-dependen 98.5 2.1E-06 4.5E-11 101.2 16.4 123 705-845 207-388 (506)
325 smart00763 AAA_PrkA PrkA AAA d 98.5 6.9E-07 1.5E-11 100.2 11.8 66 794-862 250-330 (361)
326 TIGR03015 pepcterm_ATPase puta 98.5 9.9E-06 2.1E-10 88.7 20.8 177 399-610 45-248 (269)
327 PRK09111 DNA polymerase III su 98.5 4.1E-06 8.9E-11 101.1 19.2 169 373-591 30-225 (598)
328 PRK14087 dnaA chromosomal repl 98.5 1.2E-06 2.6E-11 102.8 14.4 157 398-591 142-311 (450)
329 COG3842 PotA ABC-type spermidi 98.5 6.8E-08 1.5E-12 108.1 3.6 139 383-578 24-164 (352)
330 PRK06964 DNA polymerase III su 98.5 6.2E-07 1.3E-11 101.0 11.3 132 706-857 19-202 (342)
331 PRK08451 DNA polymerase III su 98.5 3.4E-06 7.4E-11 99.9 17.9 174 373-603 20-221 (535)
332 COG5271 MDN1 AAA ATPase contai 98.5 2.6E-06 5.7E-11 105.8 16.9 148 395-567 1541-1704(4600)
333 PRK15429 formate hydrogenlyase 98.5 1.7E-06 3.7E-11 107.3 16.1 172 707-897 398-609 (686)
334 PRK07471 DNA polymerase III su 98.5 4.7E-07 1E-11 103.3 9.9 157 671-858 15-212 (365)
335 PF01078 Mg_chelatase: Magnesi 98.5 6.7E-08 1.5E-12 100.2 2.7 45 674-732 2-46 (206)
336 PRK14970 DNA polymerase III su 98.5 2.7E-06 5.8E-11 97.8 15.9 159 397-602 39-208 (367)
337 COG3839 MalK ABC-type sugar tr 98.4 8.9E-08 1.9E-12 106.7 3.2 133 395-578 27-161 (338)
338 PF07724 AAA_2: AAA domain (Cd 98.4 3.4E-07 7.4E-12 93.5 7.2 122 396-534 2-131 (171)
339 PRK06305 DNA polymerase III su 98.4 3.3E-06 7.1E-11 99.3 16.4 148 396-591 38-214 (451)
340 COG1219 ClpX ATP-dependent pro 98.4 8.9E-07 1.9E-11 95.4 10.4 83 398-480 98-186 (408)
341 PRK11608 pspF phage shock prot 98.4 1.6E-06 3.4E-11 97.9 13.1 172 706-897 27-240 (326)
342 COG3829 RocR Transcriptional r 98.4 4.4E-07 9.5E-12 104.7 8.2 195 672-895 242-477 (560)
343 COG4608 AppF ABC-type oligopep 98.4 3.4E-07 7.3E-12 98.0 6.4 128 390-600 32-173 (268)
344 PRK13765 ATP-dependent proteas 98.4 1E-06 2.2E-11 106.6 11.3 116 813-948 277-413 (637)
345 PRK07399 DNA polymerase III su 98.4 1.2E-06 2.7E-11 98.0 10.6 183 673-891 2-223 (314)
346 COG4619 ABC-type uncharacteriz 98.4 2.4E-06 5.1E-11 84.5 11.1 138 386-577 18-160 (223)
347 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 2.5E-07 5.3E-12 99.0 4.4 59 539-602 131-204 (254)
348 TIGR00602 rad24 checkpoint pro 98.4 3.3E-06 7.3E-11 102.0 14.5 200 671-897 80-328 (637)
349 COG1122 CbiO ABC-type cobalt t 98.4 9E-08 2E-12 102.4 0.9 141 390-578 23-166 (235)
350 TIGR02030 BchI-ChlI magnesium 98.4 9.4E-06 2E-10 91.6 16.8 46 521-566 172-219 (337)
351 PRK08058 DNA polymerase III su 98.3 8.6E-07 1.9E-11 100.2 8.1 152 674-856 4-179 (329)
352 COG4172 ABC-type uncharacteriz 98.3 6.6E-07 1.4E-11 99.2 6.8 167 391-600 307-490 (534)
353 PRK05022 anaerobic nitric oxid 98.3 3E-06 6.5E-11 101.5 13.1 174 707-899 209-422 (509)
354 PF00158 Sigma54_activat: Sigm 98.3 5.5E-07 1.2E-11 91.7 5.8 118 707-843 21-161 (168)
355 PRK14950 DNA polymerase III su 98.3 1.1E-05 2.3E-10 98.2 17.9 147 397-591 38-213 (585)
356 PRK14955 DNA polymerase III su 98.3 4.1E-06 8.9E-11 97.2 13.6 148 396-591 37-220 (397)
357 KOG1514 Origin recognition com 98.3 8E-06 1.7E-10 96.4 15.8 216 708-948 422-669 (767)
358 PRK08181 transposase; Validate 98.3 1.5E-06 3.3E-11 95.0 9.4 102 706-823 104-209 (269)
359 PRK04132 replication factor C 98.3 6.1E-06 1.3E-10 102.2 15.6 145 399-591 566-723 (846)
360 COG2607 Predicted ATPase (AAA+ 98.3 1.2E-05 2.7E-10 83.9 15.0 179 375-599 68-272 (287)
361 PRK06871 DNA polymerase III su 98.3 3.5E-06 7.5E-11 94.4 11.9 127 707-857 23-177 (325)
362 COG0593 DnaA ATPase involved i 98.3 1.4E-05 3E-10 91.3 16.6 139 398-571 114-262 (408)
363 PRK11331 5-methylcytosine-spec 98.3 4.8E-06 1E-10 95.9 12.9 140 397-551 194-356 (459)
364 COG2204 AtoC Response regulato 98.3 2.1E-06 4.5E-11 99.3 10.0 174 707-899 163-376 (464)
365 PRK10820 DNA-binding transcrip 98.3 4.9E-06 1.1E-10 99.7 13.7 171 708-897 227-437 (520)
366 PRK14954 DNA polymerase III su 98.3 1.5E-05 3.3E-10 96.4 17.8 154 396-591 37-220 (620)
367 PRK05707 DNA polymerase III su 98.3 1.4E-05 3.1E-10 90.0 16.4 130 395-565 20-177 (328)
368 PRK09183 transposase/IS protei 98.3 1.8E-06 4E-11 94.1 9.0 75 705-780 99-177 (259)
369 COG1221 PspF Transcriptional r 98.3 3.4E-06 7.4E-11 95.9 11.2 172 706-898 99-310 (403)
370 PF05621 TniB: Bacterial TniB 98.3 1.1E-05 2.4E-10 88.2 14.7 179 708-900 61-272 (302)
371 COG0470 HolB ATPase involved i 98.3 8.3E-06 1.8E-10 91.6 14.4 124 399-562 26-177 (325)
372 PRK07993 DNA polymerase III su 98.3 3.6E-06 7.8E-11 95.0 11.3 131 706-856 22-177 (334)
373 KOG1969 DNA replication checkp 98.3 1.1E-05 2.4E-10 95.3 15.5 145 398-568 327-483 (877)
374 TIGR01817 nifA Nif-specific re 98.3 2.5E-06 5.4E-11 102.9 10.6 173 706-897 217-428 (534)
375 PRK15424 propionate catabolism 98.3 3.9E-06 8.5E-11 100.0 12.0 171 707-896 241-464 (538)
376 PRK11388 DNA-binding transcrip 98.3 3.5E-06 7.6E-11 103.9 12.1 172 707-897 347-554 (638)
377 PF07726 AAA_3: ATPase family 98.3 3.8E-07 8.3E-12 87.3 2.7 117 400-545 2-130 (131)
378 PRK08116 hypothetical protein; 98.3 1.7E-06 3.8E-11 94.8 8.2 111 707-832 113-235 (268)
379 COG1123 ATPase components of v 98.3 2.7E-06 5.9E-11 99.6 9.7 171 389-602 309-495 (539)
380 PRK06526 transposase; Provisio 98.2 2.4E-06 5.2E-11 92.9 8.4 103 705-823 95-201 (254)
381 TIGR02329 propionate_PrpR prop 98.2 5.9E-06 1.3E-10 98.5 12.2 197 672-897 209-450 (526)
382 PRK13531 regulatory ATPase Rav 98.2 9.2E-06 2E-10 94.4 13.3 134 397-565 39-193 (498)
383 PRK13407 bchI magnesium chelat 98.2 1.4E-05 3E-10 90.0 14.4 46 521-566 169-216 (334)
384 COG1136 SalX ABC-type antimicr 98.2 1.6E-06 3.5E-11 91.4 6.4 40 535-577 130-169 (226)
385 KOG0745 Putative ATP-dependent 98.2 3.4E-06 7.5E-11 94.2 9.1 74 398-471 227-306 (564)
386 COG2884 FtsE Predicted ATPase 98.2 1.1E-06 2.5E-11 88.6 4.7 43 380-429 18-60 (223)
387 PF12775 AAA_7: P-loop contain 98.2 1.4E-06 3E-11 95.7 5.9 145 397-567 33-194 (272)
388 PRK11650 ugpC glycerol-3-phosp 98.2 4.8E-07 1E-11 103.2 2.3 38 392-429 25-62 (356)
389 COG1129 MglA ABC-type sugar tr 98.2 4.7E-06 1E-10 97.0 10.2 41 390-430 27-67 (500)
390 COG3604 FhlA Transcriptional r 98.2 1.7E-06 3.7E-11 98.6 6.1 198 671-897 219-456 (550)
391 PRK14971 DNA polymerase III su 98.2 2E-05 4.4E-10 95.7 15.8 148 396-591 38-214 (614)
392 TIGR00602 rad24 checkpoint pro 98.2 1.5E-05 3.2E-10 96.5 14.3 186 374-602 91-322 (637)
393 PRK07952 DNA replication prote 98.2 6.1E-06 1.3E-10 89.0 9.7 100 709-823 100-205 (244)
394 cd03225 ABC_cobalt_CbiO_domain 98.2 1.7E-06 3.7E-11 91.3 5.3 38 392-429 22-59 (211)
395 PRK15079 oligopeptide ABC tran 98.2 1E-06 2.2E-11 99.7 3.4 64 535-602 149-227 (331)
396 KOG0991 Replication factor C, 98.2 4.1E-06 8.8E-11 86.7 7.3 141 671-844 23-172 (333)
397 PRK08769 DNA polymerase III su 98.2 9.1E-06 2E-10 90.9 10.7 129 708-856 26-182 (319)
398 PRK06090 DNA polymerase III su 98.2 1.3E-05 2.8E-10 89.7 11.8 132 706-857 23-178 (319)
399 PRK12377 putative replication 98.1 8.1E-06 1.8E-10 88.2 9.9 101 708-823 101-206 (248)
400 PF13177 DNA_pol3_delta2: DNA 98.1 5.8E-06 1.3E-10 83.8 8.2 115 707-843 18-159 (162)
401 CHL00081 chlI Mg-protoporyphyr 98.1 5.4E-05 1.2E-09 85.5 16.6 46 521-566 185-232 (350)
402 cd03259 ABC_Carb_Solutes_like 98.1 1.7E-06 3.6E-11 91.6 4.1 39 391-429 20-58 (213)
403 TIGR03265 PhnT2 putative 2-ami 98.1 1.1E-06 2.5E-11 100.0 2.7 37 393-429 26-62 (353)
404 PRK11147 ABC transporter ATPas 98.1 6.3E-07 1.4E-11 110.2 0.6 60 540-602 433-502 (635)
405 PRK09112 DNA polymerase III su 98.1 7.2E-05 1.6E-09 85.1 17.1 152 397-592 45-233 (351)
406 cd03226 ABC_cobalt_CbiO_domain 98.1 1.6E-06 3.5E-11 91.2 3.5 38 392-429 21-58 (205)
407 PF05621 TniB: Bacterial TniB 98.1 0.0001 2.2E-09 80.8 17.3 181 398-611 62-272 (302)
408 PRK11432 fbpC ferric transport 98.1 1.4E-06 3E-11 99.3 2.9 36 394-429 29-64 (351)
409 PRK10636 putative ABC transpor 98.1 7.4E-07 1.6E-11 109.5 0.7 64 536-602 419-492 (638)
410 PRK08699 DNA polymerase III su 98.1 1.2E-05 2.6E-10 90.5 10.3 130 706-856 19-182 (325)
411 PRK13651 cobalt transporter AT 98.1 1.5E-06 3.2E-11 97.2 3.0 65 535-602 153-230 (305)
412 COG1239 ChlI Mg-chelatase subu 98.1 3.6E-05 7.7E-10 87.0 13.9 160 674-861 16-234 (423)
413 TIGR02031 BchD-ChlD magnesium 98.1 6E-05 1.3E-09 91.5 17.0 140 399-566 18-174 (589)
414 COG4525 TauB ABC-type taurine 98.1 1.7E-05 3.8E-10 80.4 10.0 55 542-599 127-195 (259)
415 cd03265 ABC_DrrA DrrA is the A 98.1 2.9E-06 6.3E-11 90.3 4.8 37 393-429 22-58 (220)
416 PRK09452 potA putrescine/sperm 98.1 1.4E-06 3E-11 99.9 2.5 36 394-429 37-72 (375)
417 PRK10247 putative ABC transpor 98.1 1.8E-06 4E-11 92.2 3.2 36 394-429 30-65 (225)
418 TIGR03258 PhnT 2-aminoethylpho 98.1 1.4E-06 3E-11 99.5 2.4 59 540-601 130-203 (362)
419 PF01695 IstB_IS21: IstB-like 98.1 5.5E-06 1.2E-10 85.3 6.5 73 705-779 44-120 (178)
420 PRK11000 maltose/maltodextrin 98.1 1.3E-06 2.9E-11 100.1 2.2 37 393-429 25-61 (369)
421 PRK08939 primosomal protein Dn 98.1 1.1E-05 2.4E-10 90.0 9.4 102 707-823 155-261 (306)
422 cd03301 ABC_MalK_N The N-termi 98.1 2.2E-06 4.9E-11 90.6 3.5 38 392-429 21-58 (213)
423 COG4559 ABC-type hemin transpo 98.1 6.9E-06 1.5E-10 84.4 6.8 55 366-430 6-60 (259)
424 COG1220 HslU ATP-dependent pro 98.1 2.1E-05 4.6E-10 85.6 10.7 82 769-855 252-345 (444)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 2.9E-06 6.2E-11 90.1 4.0 38 392-429 25-62 (218)
426 PRK13643 cbiO cobalt transport 98.0 2.3E-06 4.9E-11 95.0 3.3 37 393-429 28-64 (288)
427 PRK11607 potG putrescine trans 98.0 1.8E-06 3.9E-11 99.2 2.4 37 393-429 41-77 (377)
428 COG1126 GlnQ ABC-type polar am 98.0 2.2E-06 4.8E-11 88.4 2.8 58 542-602 131-201 (240)
429 KOG1942 DNA helicase, TBP-inte 98.0 9.7E-05 2.1E-09 78.9 14.8 42 706-747 62-105 (456)
430 PRK11308 dppF dipeptide transp 98.0 8.4E-06 1.8E-10 92.1 7.5 65 535-602 142-220 (327)
431 TIGR00960 3a0501s02 Type II (G 98.0 3.4E-06 7.3E-11 89.5 4.0 37 393-429 25-61 (216)
432 PRK06835 DNA replication prote 98.0 1.9E-05 4.1E-10 88.9 10.1 71 708-780 183-259 (329)
433 COG3638 ABC-type phosphate/pho 98.0 2E-06 4.3E-11 89.9 2.1 42 381-429 21-62 (258)
434 cd03260 ABC_PstB_phosphate_tra 98.0 4.4E-06 9.5E-11 89.3 4.7 38 392-429 21-63 (227)
435 PRK11361 acetoacetate metaboli 98.0 3.9E-05 8.5E-10 90.7 13.2 172 707-897 165-376 (457)
436 PRK13640 cbiO cobalt transport 98.0 3.4E-06 7.5E-11 93.3 4.0 35 540-577 136-170 (282)
437 cd03261 ABC_Org_Solvent_Resist 98.0 3.9E-06 8.5E-11 90.2 4.3 36 394-429 23-58 (235)
438 PF13173 AAA_14: AAA domain 98.0 2.6E-05 5.7E-10 75.7 9.6 69 398-468 3-73 (128)
439 KOG2680 DNA helicase TIP49, TB 98.0 0.00017 3.7E-09 77.4 16.2 43 704-746 62-106 (454)
440 PRK06964 DNA polymerase III su 98.0 6E-05 1.3E-09 85.1 13.8 132 395-564 19-202 (342)
441 PRK13637 cbiO cobalt transport 98.0 3.5E-06 7.6E-11 93.5 3.9 36 394-429 30-65 (287)
442 PRK13650 cbiO cobalt transport 98.0 4E-06 8.8E-11 92.6 4.3 36 394-429 30-65 (279)
443 PF13173 AAA_14: AAA domain 98.0 1.1E-05 2.5E-10 78.2 6.9 71 708-780 2-74 (128)
444 cd03295 ABC_OpuCA_Osmoprotecti 98.0 4.9E-06 1.1E-10 89.9 4.8 38 392-429 22-59 (242)
445 PRK11022 dppD dipeptide transp 98.0 3.3E-06 7.1E-11 95.3 3.4 60 540-602 146-219 (326)
446 PRK07471 DNA polymerase III su 98.0 0.00018 3.8E-09 82.4 17.5 133 396-566 40-213 (365)
447 TIGR01188 drrA daunorubicin re 98.0 5.1E-06 1.1E-10 92.9 4.9 39 391-429 13-51 (302)
448 cd03258 ABC_MetN_methionine_tr 98.0 5.8E-06 1.3E-10 88.7 5.1 39 391-429 25-63 (233)
449 PRK06921 hypothetical protein; 98.0 2.8E-05 6E-10 85.2 10.4 69 707-778 116-188 (266)
450 cd03257 ABC_NikE_OppD_transpor 98.0 4.5E-06 9.7E-11 89.2 4.2 39 391-429 25-63 (228)
451 PRK11247 ssuB aliphatic sulfon 98.0 3.3E-06 7.1E-11 92.2 3.1 36 394-429 35-70 (257)
452 PRK10851 sulfate/thiosulfate t 98.0 2.8E-06 6.1E-11 96.8 2.6 59 540-601 129-201 (353)
453 TIGR02211 LolD_lipo_ex lipopro 98.0 3.8E-06 8.3E-11 89.3 3.5 38 392-429 26-63 (221)
454 COG1131 CcmA ABC-type multidru 98.0 5.8E-06 1.3E-10 91.9 5.1 38 393-430 27-64 (293)
455 PRK13638 cbiO cobalt transport 98.0 2.1E-06 4.7E-11 94.4 1.6 43 380-429 17-59 (271)
456 cd03296 ABC_CysA_sulfate_impor 98.0 3.4E-06 7.4E-11 90.9 3.1 38 392-429 23-60 (239)
457 PRK13634 cbiO cobalt transport 98.0 3.5E-06 7.6E-11 93.6 3.3 38 392-429 28-65 (290)
458 PRK13646 cbiO cobalt transport 98.0 4.5E-06 9.8E-11 92.6 4.0 39 392-430 28-66 (286)
459 PRK15112 antimicrobial peptide 98.0 5.1E-06 1.1E-10 91.2 4.3 36 394-429 36-71 (267)
460 TIGR02315 ABC_phnC phosphonate 98.0 1.6E-05 3.5E-10 85.8 8.1 36 394-429 25-60 (243)
461 smart00350 MCM minichromosome 98.0 1.4E-05 3E-10 95.7 8.3 143 398-567 237-401 (509)
462 PRK14250 phosphate ABC transpo 98.0 5.3E-06 1.2E-10 89.6 4.2 38 392-429 24-61 (241)
463 COG4778 PhnL ABC-type phosphon 98.0 9.8E-06 2.1E-10 80.3 5.6 145 383-578 23-180 (235)
464 PRK13647 cbiO cobalt transport 98.0 4.8E-06 1E-10 91.8 3.9 37 394-430 28-64 (274)
465 PRK05564 DNA polymerase III su 98.0 0.00016 3.4E-09 81.4 16.1 129 396-566 25-165 (313)
466 TIGR02769 nickel_nikE nickel i 98.0 6.1E-06 1.3E-10 90.4 4.6 37 393-429 33-69 (265)
467 COG4586 ABC-type uncharacteriz 98.0 2.2E-05 4.7E-10 83.6 8.3 39 391-429 44-82 (325)
468 TIGR02915 PEP_resp_reg putativ 98.0 3.4E-05 7.4E-10 90.9 11.1 172 707-897 161-372 (445)
469 PF13401 AAA_22: AAA domain; P 98.0 2.8E-05 6.1E-10 75.1 8.6 86 708-805 4-113 (131)
470 cd03269 ABC_putative_ATPase Th 98.0 5E-06 1.1E-10 87.8 3.5 40 391-430 20-59 (210)
471 COG1127 Ttg2A ABC-type transpo 98.0 9.9E-06 2.2E-10 84.9 5.6 40 535-577 133-172 (263)
472 TIGR01186 proV glycine betaine 98.0 3.2E-06 6.9E-11 96.5 2.1 39 391-429 13-51 (363)
473 PRK08058 DNA polymerase III su 98.0 0.00011 2.3E-09 83.3 14.5 125 396-563 27-179 (329)
474 PRK13543 cytochrome c biogenes 97.9 3.2E-06 6.9E-11 89.6 2.0 39 392-430 32-70 (214)
475 KOG0927 Predicted transporter 97.9 2E-05 4.2E-10 90.8 8.4 171 366-605 394-574 (614)
476 cd03268 ABC_BcrA_bacitracin_re 97.9 6.7E-06 1.5E-10 86.6 4.4 40 391-430 20-59 (208)
477 PF12774 AAA_6: Hydrolytic ATP 97.9 3.1E-05 6.7E-10 82.9 9.5 139 398-562 33-176 (231)
478 cd03266 ABC_NatA_sodium_export 97.9 5.4E-06 1.2E-10 88.0 3.6 36 394-429 28-63 (218)
479 PRK13538 cytochrome c biogenes 97.9 5.9E-06 1.3E-10 86.9 3.8 40 391-430 21-60 (204)
480 TIGR02673 FtsE cell division A 97.9 6.8E-06 1.5E-10 87.0 4.2 38 392-429 23-60 (214)
481 PF01637 Arch_ATPase: Archaeal 97.9 5.7E-05 1.2E-09 80.1 11.2 160 708-881 20-227 (234)
482 PRK11144 modC molybdate transp 97.9 6.4E-06 1.4E-10 94.0 4.1 36 394-429 21-56 (352)
483 COG1484 DnaC DNA replication p 97.9 3E-05 6.5E-10 84.4 9.1 73 706-780 103-180 (254)
484 PRK13641 cbiO cobalt transport 97.9 5.1E-06 1.1E-10 92.2 3.2 38 393-430 29-66 (287)
485 cd03218 ABC_YhbG The ABC trans 97.9 7.5E-06 1.6E-10 87.8 4.3 37 392-428 21-57 (232)
486 PRK06871 DNA polymerase III su 97.9 0.00014 2.9E-09 81.7 14.4 131 397-565 24-178 (325)
487 PRK15093 antimicrobial peptide 97.9 6.6E-06 1.4E-10 93.1 4.0 59 540-602 151-224 (330)
488 TIGR01288 nodI ATP-binding ABC 97.9 6.5E-06 1.4E-10 92.1 3.7 38 392-429 25-62 (303)
489 PTZ00111 DNA replication licen 97.9 1.6E-05 3.5E-10 98.1 7.4 135 705-858 489-656 (915)
490 PRK10584 putative ABC transpor 97.9 6.7E-06 1.5E-10 87.9 3.7 38 392-429 31-68 (228)
491 cd03292 ABC_FtsE_transporter F 97.9 7E-06 1.5E-10 86.8 3.8 37 393-429 23-59 (214)
492 COG4148 ModC ABC-type molybdat 97.9 3.2E-05 7E-10 82.5 8.5 150 399-604 26-196 (352)
493 cd03264 ABC_drug_resistance_li 97.9 8.5E-06 1.8E-10 86.1 4.3 35 394-429 23-57 (211)
494 cd03214 ABC_Iron-Siderophores_ 97.9 3.4E-05 7.3E-10 79.5 8.7 38 391-428 19-56 (180)
495 PRK14247 phosphate ABC transpo 97.9 1E-05 2.2E-10 87.9 4.9 57 542-601 141-209 (250)
496 cd01120 RecA-like_NTPases RecA 97.9 3.5E-05 7.6E-10 76.7 8.4 109 711-824 2-138 (165)
497 PRK10923 glnG nitrogen regulat 97.9 7.3E-05 1.6E-09 88.8 12.5 172 707-897 160-371 (469)
498 PRK10261 glutathione transport 97.9 6.6E-06 1.4E-10 101.0 3.7 65 535-602 451-529 (623)
499 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 7.4E-06 1.6E-10 88.1 3.6 39 391-429 21-59 (236)
500 PRK09473 oppD oligopeptide tra 97.9 2.2E-05 4.7E-10 88.9 7.5 57 541-601 155-226 (330)
No 1
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-122 Score=1048.11 Aligned_cols=887 Identities=43% Similarity=0.599 Sum_probs=718.1
Q ss_pred hhccccceEeechhHHhhhhccCCccccCCCCCCCCCCC-----CCCccccccccccCccccccccccCCCCceEEeecH
Q 002159 26 MVERRKPLVLSSTKLLINSVLSSSRRVTGENLVGDDVSP-----SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLST 100 (958)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~ 100 (958)
|++|+.||.+.+++....++++.+-+....-.+|....+ .-.+..|++++.++.. -+++..+.|++++..+.+
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~tld~~~~~~~~~ 78 (953)
T KOG0736|consen 1 MLRRLEPLPTETPPLAVRLPPGGSWPAAALGLVGALRPAGYSPGGTALLIAALEGPDAGT--EDALLRTLDLSSGAWLLA 78 (953)
T ss_pred CccccccCCCCCCchhhhccCCCCcchhhhcccccccccccCCCCCCcceEEEecCCCCc--ccccccccccccccchhh
Confidence 778889999999999999999998876666556653333 5688899999998763 388899999999999999
Q ss_pred hhhhhccccccceEEEe---------------------------------ecCCCcceEEEEEEecCCCCCccccCCCCc
Q 002159 101 CVLKQLSVTSGSLVLVK---------------------------------NAETTKQRIAQVVVLDPPTTRKQVCDGDVH 147 (958)
Q Consensus 101 ~~l~~l~~~~g~~v~v~---------------------------------~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 147 (958)
.+++++.+.+++..-.. |.-.... ++++++..++.....+-..+-.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~el~~~~n~~~~e~~~~~~~il~~g~-l~~~v~~~~~k~~~~~~~~t~~ 157 (953)
T KOG0736|consen 79 RAVRRLPINSVSLDGQSLGLGQDVGQDLVRIQELLPGYNIRVLETRPALQNILGPGT-LAQTVVRSEAKLCLERFDSTQP 157 (953)
T ss_pred cceeeccccceEeecccccccCCchhHHHHHHHHhhcCCchhheecccccceeccce-EEEEEEccccccccccccccCC
Confidence 99999999888765321 1111222 7888887777655554332222
Q ss_pred cCCCC---CcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCC-CC
Q 002159 148 SKHSS---PTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDG-KA 223 (958)
Q Consensus 148 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 223 (958)
..+.+ +.|..++....- +-...+.+|++-.+...+|..++..|+..++|.|+.-..-++.....+.-..... -.
T Consensus 158 p~~~~~~~~~l~~~~~~~~~--~lv~~s~~v~~~~~~~~~~c~~~~v~~~~lv~~g~~~~~~~~~~~~~e~~l~~~~~~g 235 (953)
T KOG0736|consen 158 PPPVSKFISSLLVNEEQELL--GLVGDSQEVARSILRGLGNCSLEWVLLAQLVHIGNTNQPDLGTVQVIEPRLDVSARLG 235 (953)
T ss_pred CchhHHHHHHHhhcchhhhh--hccccchHHHHhhhcccccceeeeeehhhhhhcCCCCCcchhhhhhhHhhhccccccc
Confidence 21111 334444443322 2224456666767777788888878888899988876655554333322111111 11
Q ss_pred ceeEEEEEecC--------CCCCcceeeEEE------eeecC--CCCccccccCCchhhhhhh----HHHHHHHHHhhcc
Q 002159 224 SLIKLGLQSVG--------QLPKYASHLRVS------FVKIP--ECGTLESLKGSSAIEAEDR----QEKIDLALHNYFE 283 (958)
Q Consensus 224 ~~~~~~~~~~~--------~~p~~~~~~rv~------~~~~p--~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~f~ 283 (958)
..+.+...||. .+|-|+.+.||+ ++.++ .++++-+...++.+..+.. +++++..|++||+
T Consensus 236 s~~~~~~~~~s~~~~~~~~~~~~~~~~~ri~~~~~~~i~~~~k~~~~~ip~~~~~~~f~~~~~~h~~~~~~~~~l~~~f~ 315 (953)
T KOG0736|consen 236 SGIGLDSEPLSPGLALVQETLPNYAGEDRIQRFLVCSIVPEDKASEGTIPGPPTASEFHIEIVSHYSAGNIDVVLKKHFK 315 (953)
T ss_pred cccccCccccCcchhhhhhhcccccchHhHhhhcccccccccccccccCCCcccchheeeeccchhhhhHHHHHHHHHhC
Confidence 12223333443 245567766766 65566 5677777766666653333 4999999999999
Q ss_pred CCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcCCCCCCCC--CCcc
Q 002159 284 VDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSALP--PDLL 361 (958)
Q Consensus 284 ~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~~~~~~~~--~~~~ 361 (958)
++|.++.||+|+|+++|+++.+.+.++ ..+....+..|||+|++++|..+..+++++++|++|+++.+++.+| |..+
T Consensus 316 t~ril~~gdvf~i~~~~~~~~~~~~~~-l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~~ss~~~~lps~~ 394 (953)
T KOG0736|consen 316 TPRILQSGDVFCIPINSQMANLNGYPE-LPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGATSSRVPLLPSSL 394 (953)
T ss_pred cceeeecCCEEEEeehhhhcccccchh-hHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccccccCCcCCChhh
Confidence 999999999999999999888877666 3333346789999999999988889999999999999999998733 1222
Q ss_pred cccCC-CCcCCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhc
Q 002159 362 ISGSN-DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERK 440 (958)
Q Consensus 362 ~~~~~-~~~~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~ 440 (958)
...++ ...+..+..+..+.++++|.+.|+...++....+||+|+|||||||+++++|.++|.|+++++|.++.+...+.
T Consensus 395 ~~l~n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~ 474 (953)
T KOG0736|consen 395 STLWNSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASH 474 (953)
T ss_pred HHHhccCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccch
Confidence 11222 23333344556788999999999988888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhh
Q 002159 441 TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (958)
Q Consensus 441 ~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~ 520 (958)
++.++.+.|+.|+.+.|+|||+.++|.+.-. +++ +..-++.+.++..+. .++....
T Consensus 475 ~etkl~~~f~~a~~~~pavifl~~~dvl~id--~dg------ged~rl~~~i~~~ls----------------~e~~~~~ 530 (953)
T KOG0736|consen 475 TETKLQAIFSRARRCSPAVLFLRNLDVLGID--QDG------GEDARLLKVIRHLLS----------------NEDFKFS 530 (953)
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccceeeec--CCC------chhHHHHHHHHHHHh----------------cccccCC
Confidence 9999999999999999999999999999842 221 334456666666543 2233445
Q ss_pred cCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 521 ~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
..+++|||+|++.+.+|+.+++.|.++|.++.|+++||.+|+++++.... ...+..++.++.+|.||+.+|+..|
T Consensus 531 ~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~-----~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 531 CPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP-----LNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred CCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-----cchHHHHHHHHHhcCCCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999997543 3456788999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGL 680 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl 680 (958)
.......+..+....-- ...-..+...........++++||.+++.+.++.++.++++|++|+|+|+||||+
T Consensus 606 ~~~~s~~~~~~i~~~~l--------~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGL 677 (953)
T KOG0736|consen 606 VAHSSLAAKTRIKNKGL--------AGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGL 677 (953)
T ss_pred hcCchHHHHHHHHhhcc--------cccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCH
Confidence 98774444333211100 0000011122233456789999999999999999999999999999999999999
Q ss_pred cccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHH
Q 002159 681 EDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIF 760 (958)
Q Consensus 681 ~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf 760 (958)
+++|.++.+.+++|++|+++|..|++++.|||||||||||||++|||+|+||..+|++|+||||++||+||+|+|+|++|
T Consensus 678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVF 757 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC-CCCcEEEEEecCCCCCCChhhcCcCCccce
Q 002159 761 QKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-SSQDLFIIGASNRPDLIDPALLRPGRFDKL 839 (958)
Q Consensus 761 ~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~-~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~ 839 (958)
++||.++||||||||+|+++|+||.+||++|+|+|+++|||+||||+.. +.+.|||||||||||+|||||+||||||+.
T Consensus 758 erAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKL 837 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKL 837 (953)
T ss_pred HHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCcccee
Confidence 9999999999999999999999999999999999999999999999986 568899999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCc
Q 002159 840 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADS 919 (958)
Q Consensus 840 I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~ 919 (958)
+|++++.|.+.+..||++++|++.++++||+.++|++|...|||||++++|++|++.|++|.+...+.....+.+.+...
T Consensus 838 vyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~ 917 (953)
T KOG0736|consen 838 VYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSS 917 (953)
T ss_pred EEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999987776544445556677
Q ss_pred ccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 920 VVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 920 ~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
+.|+++||.+|+++++||+|++||.+||+++.+|++
T Consensus 918 v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs~ 953 (953)
T KOG0736|consen 918 VRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFSG 953 (953)
T ss_pred EEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999974
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-104 Score=901.43 Aligned_cols=680 Identities=33% Similarity=0.530 Sum_probs=566.0
Q ss_pred CccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCCC
Q 002159 67 QLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDV 146 (958)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ 146 (958)
++.+.|+..+... +.+.+.. .+||.+.++++..+|..++++.| |++++.. ....+.+++.++.
T Consensus 3 ~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~--~~~~~~~~~~~~~----------- 65 (693)
T KOG0730|consen 3 SPSTAILPVKCPQ-NNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKK--RREPVDAVVQDET----------- 65 (693)
T ss_pred cccccccccccCC-CCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECcc--ccCCccceeccCC-----------
Confidence 5667788877766 7777755 78887799999999999999999 9998765 2223333333322
Q ss_pred ccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCcee
Q 002159 147 HSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLI 226 (958)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (958)
.+..+.......+||.++.+.
T Consensus 66 -------------------------~~~~~~~~~~~r~~l~~~~~~---------------------------------- 86 (693)
T KOG0730|consen 66 -------------------------SELIGRQTMVSRSNLRLQLGR---------------------------------- 86 (693)
T ss_pred -------------------------ccccchhhheeccchhhcccc----------------------------------
Confidence 123346666777999999863
Q ss_pred EEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCCc
Q 002159 227 KLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSSM 305 (958)
Q Consensus 227 ~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~~~ 305 (958)
-+.+.+|+++ +++.. |++ +|..++.+++.++ .++...+.||. .+|++..||++ .
T Consensus 87 ~~~~~~~p~v-~~~~~--i~~--l~~~~~~~~i~~~----------~~d~~~~~~~~~~~~~~~~~~~~---~------- 141 (693)
T KOG0730|consen 87 LLHSSDCPSV-KRPAR--IAV--LPVDDTSEGIAGE----------LFDVLERPFLLEALRPLVKGDTF---A------- 141 (693)
T ss_pred eecccCCCCc-cccce--eee--eehhhccccchhh----------hhhhhhhhhhhhhhCccccccch---h-------
Confidence 2344556676 57775 555 8899998899877 99999999996 79999999998 1
Q ss_pred cccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcCCCCCCCCCC-cccccCCCCcCCchHHHHHHHHHHh
Q 002159 306 ICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSALPPD-LLISGSNDFVPLQGDTVKILASILA 384 (958)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~k~L~~ii~ 384 (958)
....+.|+++...|.. .+ ...|.+...+.....-..+ .... ...++...........+..
T Consensus 142 ------------~~~~~~~~~~~~~~~~---~v--~~~t~~~~~~~~~~~~~~~~~~~~--~~~gg~~~~~~~i~e~v~~ 202 (693)
T KOG0730|consen 142 ------------GLNPAEFKVLELDPSP---QV--TPDTELSYLGEPAKREEEELPEVG--DDIGGLKRQLSVIRELVEL 202 (693)
T ss_pred ------------hhhhhhhhccccccch---hc--CccchhhhcCCCcccccccccccc--cccchhHHHHHHHHHHHHh
Confidence 2456778888877753 11 2223333332211111111 0111 2344444455556666788
Q ss_pred hcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCC-CeEE
Q 002159 385 PTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS-PTIL 460 (958)
Q Consensus 385 p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~-P~IL 460 (958)
|+.+|..+ +.+++.++|+|||||+|||.+++++|++.+++++.++++++++++.|+++.+++.+|++|..++ |+++
T Consensus 203 pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii 282 (693)
T KOG0730|consen 203 PLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSII 282 (693)
T ss_pred hhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeE
Confidence 99998776 6799999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhh
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI 540 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~al 540 (958)
||||+|++++++.... ....++...+. ..+++.....+++|+++||+++.|++++
T Consensus 283 ~IdEld~l~p~r~~~~------~~e~Rv~sqll-------------------tL~dg~~~~~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 283 FIDELDALCPKREGAD------DVESRVVSQLL-------------------TLLDGLKPDAKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred eHHhHhhhCCcccccc------hHHHHHHHHHH-------------------HHHhhCcCcCcEEEEEecCCccccChhh
Confidence 9999999999653221 12334444333 3445555678999999999999999999
Q ss_pred hc-cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccC
Q 002159 541 RR-CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKN 619 (958)
Q Consensus 541 rr-rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~ 619 (958)
|| ||++++.+|.|++.+|.+|++.+++++... .+..+.++|..++||+++|+..||++|++.+.++
T Consensus 338 RRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-----~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-------- 404 (693)
T KOG0730|consen 338 RRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-----SDVDLEDIAVSTHGYVGADLAALCREASLQATRR-------- 404 (693)
T ss_pred hcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-----chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------
Confidence 98 999999999999999999999999887642 2456799999999999999999999999888763
Q ss_pred CCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCC--CCCCCCccccccccccccccccceeeeccccc
Q 002159 620 EPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALG--APKVPNVKWEDVGGLEDVKKSILDTVQLPLLH 697 (958)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~--~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~ 697 (958)
++++|..|+...+ +++++ ..+.|+++|+||||++++|.++++.++||+.|
T Consensus 405 -------------------------~~~~~~~A~~~i~---psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~ 456 (693)
T KOG0730|consen 405 -------------------------TLEIFQEALMGIR---PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKH 456 (693)
T ss_pred -------------------------hHHHHHHHHhcCC---chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhc
Confidence 4567777777653 44444 36789999999999999999999999999999
Q ss_pred hhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEccc
Q 002159 698 KDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDEL 776 (958)
Q Consensus 698 ~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEi 776 (958)
++.|. +|+.+++|||||||||||||++|||+|+++++||++|+|++++++|+|++|+++|++|++|++.+|||||||||
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 99998 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHH
Q 002159 777 DSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 777 D~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~ 856 (958)
|+++..|++ +++++.+|+++|||+||||+.. .++|+||||||||+.||+||+||||||++||||+ ||.+.|.+||+
T Consensus 537 Dsi~~~R~g--~~~~v~~RVlsqLLtEmDG~e~-~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl-PD~~aR~~Ilk 612 (693)
T KOG0730|consen 537 DALAGSRGG--SSSGVTDRVLSQLLTEMDGLEA-LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL-PDLEARLEILK 612 (693)
T ss_pred HhHhhccCC--CccchHHHHHHHHHHHcccccc-cCcEEEEeccCChhhcCHHHcCCcccceeEeecC-ccHHHHHHHHH
Confidence 999999973 3348999999999999999975 5899999999999999999999999999999997 99999999999
Q ss_pred HHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 857 ALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 857 ~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
.+++++++.+++|+++||+. |+|||||||.++|++|++.|+++.++ ...|+.+||++|++.++|
T Consensus 613 ~~~kkmp~~~~vdl~~La~~-T~g~SGAel~~lCq~A~~~a~~e~i~---------------a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 613 QCAKKMPFSEDVDLEELAQA-TEGYSGAEIVAVCQEAALLALRESIE---------------ATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHhcCCCCccccHHHHHHH-hccCChHHHHHHHHHHHHHHHHHhcc---------------cccccHHHHHHHHHhhcc
Confidence 99999999999999999999 69999999999999999999999763 246899999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 002159 937 SLSMAELKKYELLRDQ 952 (958)
Q Consensus 937 s~s~~~l~~y~~~~~~ 952 (958)
|++..++++|++|+++
T Consensus 677 s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 677 SLTSELLEKYEDFAAR 692 (693)
T ss_pred cCCHHHHHHHHHHhhc
Confidence 9999999999999875
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-102 Score=867.50 Aligned_cols=556 Identities=35% Similarity=0.611 Sum_probs=465.8
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.++++ .+..+|.+++....||+.| ++.+++|||||||||||||.||+++|+++|.+|+.|+.+++++.+.|+++
T Consensus 190 ~diGG~d-~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 190 SDIGGLD-KTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhccChH-HHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 3445554 5677888887779999877 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
.+++.+|+.|..++|||+||||||+|+++|.. .++.+..++...|-.+++.+.. ....+.
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-----aqreMErRiVaQLlt~mD~l~~---------------~~~~g~ 328 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDAITPKREE-----AQREMERRIVAQLLTSMDELSN---------------EKTKGD 328 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccccccchhh-----HHHHHHHHHHHHHHHhhhcccc---------------cccCCC
Confidence 99999999999999999999999999997632 2333444444333333322210 011257
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+|+||||||+|+.|||+||| ||++||.++.|++.+|.+||+.++++... ..+. .++++|+.|+||||+||.+|
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~----d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDF----DFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCc----CHHHHHhcCCCccchhHHHH
Confidence 89999999999999999999 89999999999999999999999986543 3333 46999999999999999999
Q ss_pred HHHHHHHHHHhhcccccc---CCC-----------Ccch-hh-----------HHh-----hhc---CcchhhhhccccH
Q 002159 601 VADAGANLIRKSNSEVDK---NEP-----------GESD-LT-----------AKV-----AHN---DNSSIAATQVMGK 646 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~---~~~-----------~~~~-~~-----------~~~-----~~~---~~~~~~~~~~~~~ 646 (958)
|.+|+..+++|....... ... ..+. +. .++ .+. ..........+..
T Consensus 404 ~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~ 483 (802)
T KOG0733|consen 404 CREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKF 483 (802)
T ss_pred HHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecH
Confidence 999999999986543221 000 0000 00 000 000 0112334557889
Q ss_pred HHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHH
Q 002159 647 EDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLA 725 (958)
Q Consensus 647 ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLa 725 (958)
+||.+|+..+++. ...-++..+|+++|+|||++++++.++..++.+|.++|+.|. .|+..+.|||||||||||||+||
T Consensus 484 eDF~~Al~~iQPS-akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 484 EDFEEALSKIQPS-AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred HHHHHHHHhcCcc-hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHH
Confidence 9999999988542 234467889999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhc
Q 002159 726 KAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID 805 (958)
Q Consensus 726 kaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ld 805 (958)
||+|+|.++||++|+|++|++||+||+|..+|++|++||..+||||||||+|+|+++|+..+ .++..|++||||+|||
T Consensus 563 KAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElD 640 (802)
T KOG0733|consen 563 KAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELD 640 (802)
T ss_pred HHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998655 4567899999999999
Q ss_pred CCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHh--hccCCCCcCHHHHHhhCCC--CC
Q 002159 806 GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR--KFKLLEDVSLYSIAKKCPP--NF 881 (958)
Q Consensus 806 g~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~--~~~~~~d~~l~~la~~~t~--g~ 881 (958)
|+.. ..+|+|||||||||.||||++||||||+.+||++ |+.++|..|||.++| +.+++.|+||++||.. +. ||
T Consensus 641 Gl~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l-Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~-~~c~gf 717 (802)
T KOG0733|consen 641 GLEE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL-PNAEERVAILKTITKNTKPPLSSDVDLDEIARN-TKCEGF 717 (802)
T ss_pred cccc-ccceEEEeecCCCcccchhhcCCCccCceeeecC-CCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc-ccccCC
Confidence 9975 6899999999999999999999999999999998 889999999999999 8899999999999997 35 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 002159 882 TGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 954 (958)
Q Consensus 882 sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~ 954 (958)
|||||.+||++|.+.|+++.+...+......... .....+++.||++|+++++||+++.+-++|+.+++.++
T Consensus 718 tGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~-~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 718 TGADLAALVREASILALRESLFEIDSSEDDVTVR-SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccccCccccee-eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 9999999999999999999886544321111110 11346899999999999999999999999999998754
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.9e-79 Score=751.38 Aligned_cols=704 Identities=29% Similarity=0.492 Sum_probs=543.1
Q ss_pred ceEEeecHhhhhhccccccceEEEe-ecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccccc
Q 002159 93 SALLGLSTCVLKQLSVTSGSLVLVK-NAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMELL 171 (958)
Q Consensus 93 ~~~v~l~~~~l~~l~~~~g~~v~v~-~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (958)
...+.++...|.+||+..||.|.|+ +.. ...+++....+. ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------------------~~ 58 (733)
T TIGR01243 16 RGIVRIDRQTAARLGVEPGDFVEIEKGDR---SVVAIVWPLRPD----------------------------------DE 58 (733)
T ss_pred CCeEeeCHHHHHhcCCCCCCEEEEecCCC---ceeEEEEecCcc----------------------------------cc
Confidence 6799999999999999999999998 322 234444432222 23
Q ss_pred cCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceeEEEEEecCCCCCcceeeEEEeeecC
Q 002159 172 DRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKIP 251 (958)
Q Consensus 172 ~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~rv~~~~~p 251 (958)
..+++.++..++.|+|+..|+ .|++.+.. . +.|..+.+ .|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~-~-~~~~~~~~----~~ 98 (733)
T TIGR01243 59 GRGIIRMDGYLRANAGVTIGD----------------------------------TVTVERAE-V-KEAKKVVL----AP 98 (733)
T ss_pred CCCEEeecHHHHhhcCCCCCC----------------------------------eEEEeecC-C-CccceEee----cc
Confidence 458889999999999999874 45666543 3 46665332 34
Q ss_pred CCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEec
Q 002159 252 ECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEP 331 (958)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~ 331 (958)
.... ..+ ..+..+++.+|. .+++.+||.+.+... ...+.|+|+++.|
T Consensus 99 ~~~~---~~~----------~~~~~~~~~~~~-~~~~~~g~~~~~~~~-------------------~~~~~~~v~~~~p 145 (733)
T TIGR01243 99 TQPI---RFG----------RDFVDYVKEFLL-GKPISKGETVIVPVL-------------------EGALPFVVVSTQP 145 (733)
T ss_pred cccc---ccc----------cchHHHHHHHHc-CCCCCCCCEEEeccc-------------------CcceeEEEEecCC
Confidence 3221 011 144556677776 489999999888752 2458899999998
Q ss_pred CCCeEEEEcCCceEEEEcC-CCCCC---CCCCcccccCCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEc
Q 002159 332 SEETVLRVNCTKTALVLGG-SIPSA---LPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHG 404 (958)
Q Consensus 332 ~~~~~~~vd~~~T~l~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~G 404 (958)
... +.+ ...|.+.... ..... ..+.. .+++.+++.....+....+..|+.+|..+ ++.++.++||||
T Consensus 146 ~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~~~---~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~G 219 (733)
T TIGR01243 146 AGF--VYV-TEATEVEIREKPVREEIERKVPKV---TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYG 219 (733)
T ss_pred CCc--EEE-CCCceEEecCCccccccccCCCCC---CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEEC
Confidence 532 222 3344444332 21110 01121 12445566544444444455677777644 568889999999
Q ss_pred CCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccc
Q 002159 405 LPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGL 484 (958)
Q Consensus 405 ppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~ 484 (958)
|||||||++++++|++++.+++.++++++++.+.++.+..++.+|+.+..+.|+++||||+|.+++.+.... ...
T Consensus 220 ppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-----~~~ 294 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-----GEV 294 (733)
T ss_pred CCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-----chH
Confidence 999999999999999999999999999999999999999999999999999999999999999987542111 111
Q ss_pred hHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHH
Q 002159 485 SSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEML 562 (958)
Q Consensus 485 ~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il 562 (958)
..++...|..+++ +......++||++||+++.+|+++++ ||+.++.++.|+.++|.+|+
T Consensus 295 ~~~~~~~Ll~~ld-------------------~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il 355 (733)
T TIGR01243 295 EKRVVAQLLTLMD-------------------GLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEIL 355 (733)
T ss_pred HHHHHHHHHHHhh-------------------ccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHH
Confidence 1222222222221 22235789999999999999999988 89999999999999999999
Q ss_pred HHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhc
Q 002159 563 SQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQ 642 (958)
Q Consensus 563 ~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (958)
+.+.+.... ..+. .+..++..++||+++|+..|+++|++.++++....-.... ....+ ........
T Consensus 356 ~~~~~~~~l-~~d~----~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~-~~~~i--------~~~~~~~~ 421 (733)
T TIGR01243 356 KVHTRNMPL-AEDV----DLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF-EAEEI--------PAEVLKEL 421 (733)
T ss_pred HHHhcCCCC-cccc----CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc-ccccc--------cchhcccc
Confidence 998876532 2233 4688999999999999999999999999886532110000 00000 01111234
Q ss_pred cccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChh
Q 002159 643 VMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGK 721 (958)
Q Consensus 643 ~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGK 721 (958)
.++++||..|+...++... .....+.|.++|++++|++.+|+.+.+.+.+|+.+++.|. .++.++.++||||||||||
T Consensus 422 ~v~~~df~~Al~~v~ps~~-~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGK 500 (733)
T TIGR01243 422 KVTMKDFMEALKMVEPSAI-REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGK 500 (733)
T ss_pred cccHHHHHHHHhhcccccc-chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCH
Confidence 6788999999987653221 1123567899999999999999999999999999999988 5899999999999999999
Q ss_pred HHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 722 TLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 722 TtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
|++|+++|++++.+|+.++++++.++|+|+++++++++|+.|+..+||||||||+|++++.|+...+ .+..++++++||
T Consensus 501 T~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL 579 (733)
T TIGR01243 501 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLL 579 (733)
T ss_pred HHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998875433 456789999999
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 881 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~ 881 (958)
++|||+.. .++++||+|||+|+.||||++||||||+.|++|+ |+.++|.+||+.++++.++..++++..+|+. |+||
T Consensus 580 ~~ldg~~~-~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~-Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~-t~g~ 656 (733)
T TIGR01243 580 TEMDGIQE-LSNVVVIAATNRPDILDPALLRPGRFDRLILVPP-PDEEARKEIFKIHTRSMPLAEDVDLEELAEM-TEGY 656 (733)
T ss_pred HHhhcccC-CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCC-cCHHHHHHHHHHHhcCCCCCccCCHHHHHHH-cCCC
Confidence 99999865 5789999999999999999999999999999997 8999999999999999999999999999999 5999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCCC-ccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 882 TGADMYALCADAWFHAAKRKVLSSDSNSD-SSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 882 sGaDi~~l~~~A~~~A~~r~~~~~~~~~~-~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
|||||.++|++|++.|+++.+........ ....+......|+++||++|+++++||++++++++|++|+++|..
T Consensus 657 sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 657 TGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999987653221100 000111234579999999999999999999999999999999965
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-70 Score=621.90 Aligned_cols=498 Identities=34% Similarity=0.540 Sum_probs=414.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
..+|||+||+|+|||+|+++++++. -+|+..++|+.+-+.........++.+|.++.+++|+|+++|++|.|+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 4569999999999999999999987 367888999998887767778889999999999999999999999998733
Q ss_pred cCCCCCCcccc-chHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEE
Q 002159 473 SNESLPNDQVG-LSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEIS 549 (958)
Q Consensus 473 s~~~~~~~~~~-~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIs 549 (958)
++++ .+.+ ...++...+.++..++ ...+..+.|||+.+..+.+++.+-+ +|...+.
T Consensus 511 ~~e~---~q~~~~~~rla~flnqvi~~y------------------~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 511 SNEN---GQDGVVSERLAAFLNQVIKIY------------------LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred cccC---CcchHHHHHHHHHHHHHHHHH------------------HccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 3332 2222 2334444454443321 1125568999999999999998776 6889999
Q ss_pred cCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHH
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAK 629 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~ 629 (958)
++.|+..+|.+|++.++++.. +.....+|+-++..|.||...|+..++.+|...++......
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~----~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------- 631 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNL----SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------- 631 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhh----hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc--------------
Confidence 999999999999999997642 12234556779999999999999999999988876321100
Q ss_pred hhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCC
Q 002159 630 VAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKR 708 (958)
Q Consensus 630 ~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~ 708 (958)
....++.++|.++|+...+.....+...+....+|+|+||+.++|+.+.+.++||.+||..|. ..++.+
T Consensus 632 ----------~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~ 701 (952)
T KOG0735|consen 632 ----------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR 701 (952)
T ss_pred ----------CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc
Confidence 123678899999998653322222333444558999999999999999999999999999998 589999
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~ 788 (958)
.|||||||||||||+||.++|..++.+||+|+|||++++|+|.+|+++|++|.+|+.++||||||||+|+++|+||. |
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--D 779 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--D 779 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 6
Q ss_pred CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc
Q 002159 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV 868 (958)
Q Consensus 789 ~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~ 868 (958)
+.|+.+|++||||++|||... -++|+|+|||.|||+|||||+||||||+.+|.++ |++.+|.+|++.+......+.++
T Consensus 780 sTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~-P~~~eRl~il~~ls~s~~~~~~v 857 (952)
T KOG0735|consen 780 STGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPL-PDEPERLEILQVLSNSLLKDTDV 857 (952)
T ss_pred CCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHhhcCCCccceeeeCCC-CCcHHHHHHHHHHhhccCCcccc
Confidence 779999999999999999976 6899999999999999999999999999999997 89999999999999999999999
Q ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHH--HHHhCCCCCHHHHHHH
Q 002159 869 SLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV--LRELSPSLSMAELKKY 946 (958)
Q Consensus 869 ~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~a--l~~~~ps~s~~~l~~y 946 (958)
|++.+|.. |+|||||||..+|.+|.+.|+++.....+.. ...+.++...+... ..+-+||.++-+-+.|
T Consensus 858 dl~~~a~~-T~g~tgADlq~ll~~A~l~avh~~l~~~~~~--------~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~ 928 (952)
T KOG0735|consen 858 DLECLAQK-TDGFTGADLQSLLYNAQLAAVHEILKREDEE--------GVVPSIDDASLESIFSDSKRKPSRSALDNRKG 928 (952)
T ss_pred chHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHhcCcc--------ccCCccchhhhhhhhhccCCCccccccchhhh
Confidence 99999999 6999999999999999999999987654321 11112333333333 3478899999998888
Q ss_pred HHHHHHhhcC
Q 002159 947 ELLRDQFEGS 956 (958)
Q Consensus 947 ~~~~~~~~~~ 956 (958)
++...+|..+
T Consensus 929 ~~~~~~~~~~ 938 (952)
T KOG0735|consen 929 QDVYSQFLSD 938 (952)
T ss_pred hhHHHhhcCc
Confidence 8888887654
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-59 Score=554.95 Aligned_cols=474 Identities=36% Similarity=0.574 Sum_probs=407.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
...++.+++++||||+|||++++++|.+ +.++..+++++.++++.++.+..++..|+.+....|+++++|++|.+.+.+
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~ 92 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCc
Confidence 3567788999999999999999999999 777788899999999999999999999999999999999999999999865
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEc
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISM 550 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsi 550 (958)
.. ........+...+..... +..... +++++.+|++..+++++++ +|..++.+
T Consensus 93 ~~-----~~~~~~~~v~~~l~~~~d-------------------~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 93 SS-----DQGEVERRVVAQLLALMD-------------------GLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred cc-----cccchhhHHHHHHHHhcc-------------------cccCCc-eEEEeecCCccccChhHhCccccceeeec
Confidence 32 111222333333322222 112244 9999999999999999887 79999999
Q ss_pred CCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHh
Q 002159 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKV 630 (958)
Q Consensus 551 g~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~ 630 (958)
+.|+...|.+|++.+...+.. .. ...++.++..+.||+++|+..+++++.+...++..
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~~-~~----~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~----------------- 205 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMFL-GP----PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI----------------- 205 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCCC-cc----cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 999999999999999866543 21 33468899999999999999999999888877642
Q ss_pred hhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhhc-CCCCCC
Q 002159 631 AHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRS 709 (958)
Q Consensus 631 ~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~-~i~~~~ 709 (958)
.........+.+++.+++...... ..-....|.++|.++||++.+|+.+.+.+.+|+.+++.|.. +++++.
T Consensus 206 -----~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~ 277 (494)
T COG0464 206 -----DLVGEYIGVTEDDFEEALKKVLPS---RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPK 277 (494)
T ss_pred -----ccCcccccccHHHHHHHHHhcCcc---cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCC
Confidence 000124567788999999877543 22345678999999999999999999999999999999885 889999
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~ 789 (958)
++|||||||||||+||+++|++++.+|+++++++++++|+|++|++++++|..|+..+||||||||+|++++.|+.+.+.
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~ 357 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG 357 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765433
Q ss_pred cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc--CCCC
Q 002159 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK--LLED 867 (958)
Q Consensus 790 ~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~--~~~d 867 (958)
...|+++++|++|||+.. ..+|+||+|||+|+.+|||++||||||+.|||++ ||.++|..||+.+++... +..+
T Consensus 358 --~~~r~~~~lL~~~d~~e~-~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~-pd~~~r~~i~~~~~~~~~~~~~~~ 433 (494)
T COG0464 358 --SGRRVVGQLLTELDGIEK-AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL-PDLEERLEIFKIHLRDKKPPLAED 433 (494)
T ss_pred --HHHHHHHHHHHHhcCCCc-cCceEEEecCCCccccCHhhcccCccceEeecCC-CCHHHHHHHHHHHhcccCCcchhh
Confidence 337999999999999975 5789999999999999999999999999999997 999999999999999544 4689
Q ss_pred cCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHH
Q 002159 868 VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYE 947 (958)
Q Consensus 868 ~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~ 947 (958)
+++..+++. |+||+|+||.++|++|++.|+++.. ...++++||.+|+++++||++ |+
T Consensus 434 ~~~~~l~~~-t~~~sgadi~~i~~ea~~~~~~~~~----------------~~~~~~~~~~~a~~~~~p~~~------~~ 490 (494)
T COG0464 434 VDLEELAEI-TEGYSGADIAALVREAALEALREAR----------------RREVTLDDFLDALKKIKPSVT------YE 490 (494)
T ss_pred hhHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHhc----------------cCCccHHHHHHHHHhcCCCCC------hh
Confidence 999999998 6999999999999999999998853 236999999999999999998 87
Q ss_pred HH
Q 002159 948 LL 949 (958)
Q Consensus 948 ~~ 949 (958)
+|
T Consensus 491 ~~ 492 (494)
T COG0464 491 EW 492 (494)
T ss_pred hc
Confidence 77
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-57 Score=480.63 Aligned_cols=254 Identities=41% Similarity=0.739 Sum_probs=236.5
Q ss_pred cCCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeecc
Q 002159 663 ALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG 741 (958)
Q Consensus 663 ~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~ 741 (958)
.+...+.|.++++||||++++.+++++.+++|+.+|++|. .|+.|++|||||||||||||+||||+|++.+++|+.+.|
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 3445677999999999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred chhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcc-hHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 742 PELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 742 ~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~-~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
++|..+|+|+..+-+|++|+.|+.++||||||||||+++.+|...+.++. ...|.+-+||++|||+.. .++|-||+||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~AT 297 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMAT 297 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEec
Confidence 99999999999999999999999999999999999999999976543332 346888999999999975 6899999999
Q ss_pred CCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 002159 821 NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKR 900 (958)
Q Consensus 821 Nrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r 900 (958)
||||.|||||+||||||+.|+||+ ||.+.|.+||++|++++.+..++||+.||+. |+|||||||+++|.+|.+.|+|+
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfpl-Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~-~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPL-PDEEGRAEILKIHTRKMNLADDVDLELLARL-TEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred CCccccChhhcCCCcccceeecCC-CCHHHHHHHHHHHhhhccCccCcCHHHHHHh-cCCCchHHHHHHHHHHhHHHHHh
Confidence 999999999999999999999997 9999999999999999999999999999999 59999999999999999999987
Q ss_pred HhcccCCCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 901 KVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
. ...||++||.+|..++.-
T Consensus 376 ~-----------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 376 R-----------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred c-----------------cCeecHHHHHHHHHHHHh
Confidence 4 236999999999998754
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-55 Score=468.38 Aligned_cols=296 Identities=39% Similarity=0.638 Sum_probs=267.0
Q ss_pred HHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHH
Q 002159 647 EDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAK 726 (958)
Q Consensus 647 ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLak 726 (958)
.++.+++++.. ....|+++|+||.|+.++|+-|.|++.+|+..|+.|....+|.+|||++||||||||+|||
T Consensus 192 ~~Lve~lerdI--------l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAK 263 (491)
T KOG0738|consen 192 ADLVEALERDI--------LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAK 263 (491)
T ss_pred HHHHHHHHHHH--------hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHH
Confidence 36666776532 1245889999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC
Q 002159 727 AVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 806 (958)
Q Consensus 727 aiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg 806 (958)
|+|+||+.+|+.|+.+.+.++|-|++|+.+|-+|+.|+..+|++|||||||+|+.+||++++ ++..+|+.+.||.+|||
T Consensus 264 AvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E-HEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 264 AVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE-HEASRRVKSELLVQMDG 342 (491)
T ss_pred HHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc-hhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999997754 57789999999999999
Q ss_pred CCCCCCc---EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCH
Q 002159 807 LNDSSQD---LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTG 883 (958)
Q Consensus 807 ~~~~~~~---v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sG 883 (958)
++....+ |+|++|||.||.||.||+| ||.+.||||+ |+.+.|..+++..++...++++++++.||++ ++||||
T Consensus 343 ~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPL-P~~~~R~~Li~~~l~~~~~~~~~~~~~lae~-~eGySG 418 (491)
T KOG0738|consen 343 VQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPL-PDAEARSALIKILLRSVELDDPVNLEDLAER-SEGYSG 418 (491)
T ss_pred cccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeC-CCHHHHHHHHHHhhccccCCCCccHHHHHHH-hcCCCh
Confidence 9876666 9999999999999999999 9999999999 8999999999999999999999999999999 599999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 884 ADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 884 aDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
+||.++|++|.+.++||.+.............+.-..+++++||+.|+++++||++.+++.+||+|.+.|..
T Consensus 419 aDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 419 ADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998865433221112222222579999999999999999999999999999999964
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=446.61 Aligned_cols=280 Identities=37% Similarity=0.691 Sum_probs=250.0
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
+++++.++||++....++.+.+.. +.||+.|. .|+.|++|+|||||||||||+||+|+|++++.+|++++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 478999999999999999998877 88999888 6999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC---CCcEEEEEecCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS---SQDLFIIGASNRPDL 825 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~---~~~v~VI~aTNrp~~ 825 (958)
.|++|+++|++|+.|...+|||+||||||++.++|... +.+..+|++.|||+.||++... ...|+|||||||||.
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 99999999999999999999999999999999999763 2345679999999999998643 357999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
|||||+|+||||+.|.+++ |+..+|++||+.+.+++.++.++|+..||+. |+||+||||.+||.+|++.|++|.+...
T Consensus 342 lDpaLRRaGRFdrEI~l~v-P~e~aR~~IL~~~~~~lrl~g~~d~~qlA~l-TPGfVGADL~AL~~~Aa~vAikR~ld~~ 419 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGV-PSETAREEILRIICRGLRLSGDFDFKQLAKL-TPGFVGADLMALCREAAFVAIKRILDQS 419 (802)
T ss_pred cCHHHhccccccceeeecC-CchHHHHHHHHHHHhhCCCCCCcCHHHHHhc-CCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999 8999999999999999999999999999999 6999999999999999999999988743
Q ss_pred CC--------CCC----cc---------------------------------ccccCCcccccHHHHHHHHHHhCCCC--
Q 002159 906 DS--------NSD----SS---------------------------------RIDQADSVVVEYDDFVKVLRELSPSL-- 938 (958)
Q Consensus 906 ~~--------~~~----~~---------------------------------~~~~~~~~~i~~~df~~al~~~~ps~-- 938 (958)
.. .+. .+ ..+......|+++||++|+..++||.
T Consensus 420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR 499 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR 499 (802)
T ss_pred cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence 21 000 00 00112234689999999999998875
Q ss_pred ---------CHHHHHHHHHHHHHhh
Q 002159 939 ---------SMAELKKYELLRDQFE 954 (958)
Q Consensus 939 ---------s~~~l~~y~~~~~~~~ 954 (958)
+|+++...++++.++.
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~ 524 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELN 524 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHH
Confidence 7999999999998875
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=404.63 Aligned_cols=284 Identities=33% Similarity=0.603 Sum_probs=254.9
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
..+.|+++|+|+.|++..|+.|++++.+|++.|++|.....|.++|||||||||||+.||||+|++.+.+|++|+.++|+
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 35679999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
++|.|++|+.++.+|+.||+++|+||||||||++++.|+.+ .++..+|+...+|.+|.|+.....+|+|+||||-||.
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 99999999999999999999999999999999999988653 3456799999999999999988889999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc-CCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK-LLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~-~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
||.|++| ||++.||+|+ |+..+|..+|+.++...+ ...+.|+.+|++. |+||||+||.-++++|.+..+|+...+
T Consensus 282 LDsAIRR--RFekRIYIPL-Pe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k-TeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPL-PEAHARARMFKLHLGDTPHVLTEQDFKELARK-TEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred HHHHHHH--HhhcceeccC-CcHHHhhhhheeccCCCccccchhhHHHHHhh-cCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999 9999999999 899999999999998764 3457789999999 699999999999999999999886543
Q ss_pred cCCCC----C--cc-----------------------ccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 905 SDSNS----D--SS-----------------------RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 905 ~~~~~----~--~~-----------------------~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
..-.. . .. ..+..-+++||+.||..++...+|.+++++|.+.++|.+.|.+
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 21100 0 00 0112335689999999999999999999999999999999975
No 11
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-43 Score=412.01 Aligned_cols=398 Identities=22% Similarity=0.405 Sum_probs=301.3
Q ss_pred CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC
Q 002159 456 SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG 535 (958)
Q Consensus 456 ~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~ 535 (958)
.|+++++.+++.+... ..+.+.|+.+... ... ..+.+|+.+. ...
T Consensus 81 ~~~~~vl~d~h~~~~~--------------~~~~r~l~~l~~~------------------~~~-~~~~~i~~~~--~~~ 125 (489)
T CHL00195 81 TPALFLLKDFNRFLND--------------ISISRKLRNLSRI------------------LKT-QPKTIIIIAS--ELN 125 (489)
T ss_pred CCcEEEEecchhhhcc--------------hHHHHHHHHHHHH------------------HHh-CCCEEEEEcC--CCC
Confidence 4789999999988741 1233334333210 111 2334444443 357
Q ss_pred CChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccc
Q 002159 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSE 615 (958)
Q Consensus 536 Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~ 615 (958)
+|+.+.+. ...++++.|+..++.++++.+...... . -....++.+++.+.|++-.++..+...+.. ... .
T Consensus 126 ~p~el~~~-~~~~~~~lP~~~ei~~~l~~~~~~~~~---~-~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~-~ 195 (489)
T CHL00195 126 IPKELKDL-ITVLEFPLPTESEIKKELTRLIKSLNI---K-IDSELLENLTRACQGLSLERIRRVLSKIIA----TYK-T 195 (489)
T ss_pred CCHHHHhc-eeEEeecCcCHHHHHHHHHHHHHhcCC---C-CCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC-C
Confidence 88887664 478999999999999999888753322 1 224567899999999999999988765321 100 0
Q ss_pred cccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhccc-ccccCCCCCCCCccccccccccccccccceeeecc
Q 002159 616 VDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR-NASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLP 694 (958)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~-~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~ 694 (958)
++.+++...++..++. ....+-....+.++|+++||++.+|+.+.+....
T Consensus 196 ----------------------------~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~- 246 (489)
T CHL00195 196 ----------------------------IDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS- 246 (489)
T ss_pred ----------------------------CChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH-
Confidence 1111111111100000 0011112223677899999999999888653311
Q ss_pred ccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEc
Q 002159 695 LLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFD 774 (958)
Q Consensus 695 l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiD 774 (958)
.....-..|+.+++|+|||||||||||++||++|++++.+|+.++++.+.++|+|+++.+++++|+.|+..+|||||||
T Consensus 247 -~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 247 -FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred -hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 1111223588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHH
Q 002159 775 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERV 854 (958)
Q Consensus 775 EiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~I 854 (958)
|+|+++.+++..++ ++...++++++++.|+.. ..+|+||+|||+|+.||||++||||||+.+++++ |+.++|.+|
T Consensus 326 EID~~~~~~~~~~d-~~~~~rvl~~lL~~l~~~---~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~l-P~~~eR~~I 400 (489)
T CHL00195 326 EIDKAFSNSESKGD-SGTTNRVLATFITWLSEK---KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL-PSLEEREKI 400 (489)
T ss_pred hhhhhhccccCCCC-chHHHHHHHHHHHHHhcC---CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCC-cCHHHHHHH
Confidence 99999987654444 356789999999999853 4679999999999999999999999999999998 889999999
Q ss_pred HHHHHhhccC--CCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 855 LKALTRKFKL--LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 855 l~~~~~~~~~--~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
|+.++++... ..+.+++.+|+. |+|||||||.++|.+|+..|..+. ..++.+||.+|++
T Consensus 401 l~~~l~~~~~~~~~~~dl~~La~~-T~GfSGAdI~~lv~eA~~~A~~~~------------------~~lt~~dl~~a~~ 461 (489)
T CHL00195 401 FKIHLQKFRPKSWKKYDIKKLSKL-SNKFSGAEIEQSIIEAMYIAFYEK------------------REFTTDDILLALK 461 (489)
T ss_pred HHHHHhhcCCCcccccCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHcC------------------CCcCHHHHHHHHH
Confidence 9999988643 358899999999 699999999999999999887542 2489999999999
Q ss_pred HhCCC--CCHHHHHHHHHHHHH
Q 002159 933 ELSPS--LSMAELKKYELLRDQ 952 (958)
Q Consensus 933 ~~~ps--~s~~~l~~y~~~~~~ 952 (958)
+++|+ ...++++.|++|+..
T Consensus 462 ~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 462 QFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred hcCCCcccCHHHHHHHHHHHHc
Confidence 99997 467899999999875
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-45 Score=371.41 Aligned_cols=254 Identities=38% Similarity=0.698 Sum_probs=233.3
Q ss_pred cCCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeecc
Q 002159 663 ALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG 741 (958)
Q Consensus 663 ~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~ 741 (958)
-++..+.|.+++.|+||++-.|+++++++++|+.|.+++. -|+.|++|+|+|||||||||+|+||+|+...+.||.+.|
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg 222 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence 3456678999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred chhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCC-CCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 742 PELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 742 ~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~-~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
+++..+|.|+...-+|++|+.|+..+|+||||||+|+++.+|-... .......|++-.||++|||+.. ..+|-||.||
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq-~~nvkvimat 301 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ-TTNVKVIMAT 301 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc-ccceEEEEec
Confidence 9999999999999999999999999999999999999999885432 2223456889999999999965 5799999999
Q ss_pred CCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 002159 821 NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKR 900 (958)
Q Consensus 821 Nrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r 900 (958)
||.|.|||||+||||+|+.|+||+ ||..++.-+|...+.++.+.+++|++.+..+ ++..|||||.++|++|.+.|+|+
T Consensus 302 nradtldpallrpgrldrkiefpl-pdrrqkrlvf~titskm~ls~~vdle~~v~r-pdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 302 NRADTLDPALLRPGRLDRKIEFPL-PDRRQKRLVFSTITSKMNLSDEVDLEDLVAR-PDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred CcccccCHhhcCCccccccccCCC-CchhhhhhhHHhhhhcccCCcccCHHHHhcC-ccccchhhHHHHHHHHhHHHHHh
Confidence 999999999999999999999999 8888999999999999999999999999999 79999999999999999999987
Q ss_pred HhcccCCCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 901 KVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
. ...+...||++|.+....
T Consensus 380 n-----------------ryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 380 N-----------------RYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred c-----------------ceeeeHHHHHHHHHhhcC
Confidence 4 236889999999988643
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=405.74 Aligned_cols=243 Identities=37% Similarity=0.634 Sum_probs=223.1
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
..+++|+|+.|.++.|+++.|.+++ ++.|..|. .|-+-++||||+||||||||+||||+|+|.+.+|+...|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4578899999999999999887754 67788887 588889999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
|+|...+.+|++|+.|++.+||||||||||++.++|..... .+++..+||||.||||+.. ..+|+||||||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhh
Confidence 99999999999999999999999999999999999976432 2789999999999999975 57999999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
+||.||||||+.|.||. ||...|.+||+.++++.+.+.++|+.-||+- |.||+||||.++++.|++.|....
T Consensus 454 ~AL~RPGRFD~~v~Vp~-PDv~GR~eIL~~yl~ki~~~~~VD~~iiARG-T~GFsGAdLaNlVNqAAlkAa~dg------ 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPL-PDVRGRTEILKLYLSKIPLDEDVDPKIIARG-TPGFSGADLANLVNQAALKAAVDG------ 525 (752)
T ss_pred HHhcCCCccceeEecCC-CCcccHHHHHHHHHhcCCcccCCCHhHhccC-CCCCchHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999998 9999999999999999999999999999999 699999999999999999887542
Q ss_pred CCCccccccCCcccccHHHHHHHHHHh
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
...|+|+||+.|-.++
T Consensus 526 -----------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------cccccHHHHhhhhhhe
Confidence 2358999999987764
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-45 Score=369.74 Aligned_cols=258 Identities=38% Similarity=0.672 Sum_probs=235.5
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..++|+.+++-+||++...+++.+.+++|.+||++|. .|+..++|+|||||||||||+||+++|....+.|+.++|+++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 3567888999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
..+|+|+...-+|++|-.||.++|+|||.||||++...|..++.. .....|.+-.||++|||+.. .+++-||.||||.
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea-tknikvimatnri 296 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKVIMATNRI 296 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-ccceEEEEecccc
Confidence 999999999999999999999999999999999999988754322 22346778899999999975 6899999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
|.|||||+||||+|+.|+|| ||+.++|.+||++|.|++++...+++..+|+++ .|.|||++..+|.+|.+.|+|+.
T Consensus 297 dild~allrpgridrkiefp-~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm-~gasgaevk~vcteagm~alrer-- 372 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFP-PPNEEARLDILKIHSRKMNLTRGINLRKIAEKM-PGASGAEVKGVCTEAGMYALRER-- 372 (404)
T ss_pred ccccHhhcCCCcccccccCC-CCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC-CCCccchhhhhhhhhhHHHHHHh--
Confidence 99999999999999999999 599999999999999999999999999999996 99999999999999999999874
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHH
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAEL 943 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l 943 (958)
.+.+|++||+-|..++-.--++..+
T Consensus 373 ---------------rvhvtqedfemav~kvm~k~~e~nm 397 (404)
T KOG0728|consen 373 ---------------RVHVTQEDFEMAVAKVMQKDSEKNM 397 (404)
T ss_pred ---------------hccccHHHHHHHHHHHHhccccccc
Confidence 2479999999999987554444433
No 15
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=369.86 Aligned_cols=251 Identities=36% Similarity=0.669 Sum_probs=229.7
Q ss_pred CCCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc
Q 002159 664 LGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 742 (958)
Q Consensus 664 l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~ 742 (958)
+...+.|..++.|+||++...+++.+.+++|+.||+++. .|+++++|++|||+||||||+||||+|+...++|+.+-|+
T Consensus 174 mK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGs 253 (440)
T KOG0726|consen 174 MKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGS 253 (440)
T ss_pred eecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhH
Confidence 344567889999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCc-chHHHHHHHHHHhhcCCCCCCCcEEEEEecC
Q 002159 743 ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 821 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~-~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN 821 (958)
+|+.+|.|+..+.+|++|+.|..++|+|+||||||++..+|-.+...+ ....|.+-.||+++||+.. .++|-||.|||
T Consensus 254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds-rgDvKvimATn 332 (440)
T KOG0726|consen 254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATN 332 (440)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc-cCCeEEEEecc
Confidence 999999999999999999999999999999999999999886432211 2345666789999999964 78999999999
Q ss_pred CCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Q 002159 822 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRK 901 (958)
Q Consensus 822 rp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~ 901 (958)
+.+.|||||.||||+|+.|.||+ ||...+..||.+|+.++.+..+|+++.+... -+.+|||||.++|.+|.+.|+|+.
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~-pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~-kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPL-PDEKTKKKIFQIHTSRMTLAEDVNLEELIMT-KDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccccCHhhcCCCccccccccCC-CchhhhceeEEEeecccchhccccHHHHhhc-ccccccccHHHHHHHHhHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999999999876 589999999999999999999885
Q ss_pred hcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 902 VLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
- ..++++||.+|.+++
T Consensus 411 R-----------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 R-----------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred H-----------------hhccHHHHHHHHHHH
Confidence 3 258999999998875
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=361.50 Aligned_cols=249 Identities=36% Similarity=0.688 Sum_probs=230.2
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|...++||||++...+++.+++.+|+.|++.|. .|+++++|+|+|||||||||++|+|.|.+.++.|+.+-||.+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456888899999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcc-hHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~-~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
.+|+|+..+.+|+.|..|+..+|+||||||+|++..+|-.+..++. ...|.+-.||++|||+.. ...|-||+||||.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss-~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-DDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC-ccceEEEeeccccc
Confidence 9999999999999999999999999999999999999875543332 345777889999999975 67899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.|||||+|.||+|+.|+||. |..+.|.+|+++|.|++....|++++++|+. |++|.||...++|-+|.+.|+||..
T Consensus 322 iLDPALlRSGRLDRKIEfP~-Pne~aRarIlQIHsRKMnv~~DvNfeELaRs-TddFNGAQcKAVcVEAGMiALRr~a-- 397 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPH-PNEEARARILQIHSRKMNVSDDVNFEELARS-TDDFNGAQCKAVCVEAGMIALRRGA-- 397 (424)
T ss_pred ccCHHHhhcccccccccCCC-CChHHHHHHHHHhhhhcCCCCCCCHHHHhhc-ccccCchhheeeehhhhHHHHhccc--
Confidence 99999999999999999998 8899999999999999999999999999998 6999999999999999999999842
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
..|+.+||.+++.+++
T Consensus 398 ---------------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 398 ---------------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------ccccHHHHHHHHHHHH
Confidence 3588999999998764
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=403.47 Aligned_cols=246 Identities=39% Similarity=0.717 Sum_probs=223.4
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
-..++|+|+.|++++|++|+|.+.+ +++|+.|. .|.+.++|+||+||||||||+||||+|+|.+.||++++|+|++.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3458999999999999999998754 77888887 699999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCC--CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA--SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~--~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
++|....++|++|..|+..+|||+||||||.+...|+. .+..+...+..+||||.+|||+... ++|+|+++|||||.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccc
Confidence 99999999999999999999999999999999999952 2223334568899999999999764 88999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
||+||+||||||+.|++++ |+...|.+|++.|.++.++. +++++..+|.. |+||+||||.++|++|+..|+|+..
T Consensus 463 ld~allrpGRfdr~i~i~~-p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~-t~gf~gadl~n~~neaa~~a~r~~~-- 538 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDL-PDVKGRASILKVHLRKKKLDDEDVDLSKLASL-TPGFSGADLANLCNEAALLAARKGL-- 538 (774)
T ss_pred cCHHhcCCCccccceeccC-CchhhhHHHHHHHhhccCCCcchhhHHHHHhc-CCCCcHHHHHhhhhHHHHHHHHhcc--
Confidence 9999999999999999998 99999999999999999885 88999999999 6999999999999999999998742
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
..|+..||+.|++.+.
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVI 554 (774)
T ss_pred ---------------CccchhhHHHHHHHHh
Confidence 2588999999999543
No 18
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-42 Score=370.80 Aligned_cols=282 Identities=33% Similarity=0.564 Sum_probs=245.1
Q ss_pred CCCCCCCccccccccccccccccceeeeccccchhhhhc--CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc
Q 002159 665 GAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS--GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 742 (958)
Q Consensus 665 ~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~--~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~ 742 (958)
-.+..-.++|+||||++.+++.+++.+.+|+.+|++|.. -+++.+|||||||||||||++|||+|++.+++|+.|.++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 345556789999999999999999999999999999963 457899999999999999999999999999999999999
Q ss_pred hhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCC-cEEEEEecC
Q 002159 743 ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ-DLFIIGASN 821 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~-~v~VI~aTN 821 (958)
.+.++|+|++++.++.+|..|.+.+||||||||+|++...|+ + ..++++..+.+++....||+....+ .|+|+||||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~-s-~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR-S-TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc-c-chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999994 3 3467889999999999999976433 599999999
Q ss_pred CCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Q 002159 822 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRK 901 (958)
Q Consensus 822 rp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~ 901 (958)
||..+|.|++| |+.+.++|++ |+.+.|..||+.++++.++.+++|+.++|.. |+||||.||.++|..|++..+|+.
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~l-P~~~qR~kILkviLk~e~~e~~vD~~~iA~~-t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGL-PDAEQRRKILKVILKKEKLEDDVDLDEIAQM-TEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCC-CchhhHHHHHHHHhcccccCcccCHHHHHHh-cCCCcHHHHHHHHHHHhHhHHHHH
Confidence 99999999999 9999999999 8899999999999999999999999999999 599999999999999999999998
Q ss_pred hcccCCCCC--c--cc--------cccCCcccccHHHHHHHHHHhCCCCCHHH--HHHHHHHHHHh
Q 002159 902 VLSSDSNSD--S--SR--------IDQADSVVVEYDDFVKVLRELSPSLSMAE--LKKYELLRDQF 953 (958)
Q Consensus 902 ~~~~~~~~~--~--~~--------~~~~~~~~i~~~df~~al~~~~ps~s~~~--l~~y~~~~~~~ 953 (958)
+... .... . .. .......+++++||..|...+-+|++.+. +...+.|.+..
T Consensus 316 ~~~~-~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~ 380 (386)
T KOG0737|consen 316 LVSE-TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELY 380 (386)
T ss_pred HHhc-ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhh
Confidence 8764 1000 0 00 00112468999999999999988865433 44555565544
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=353.32 Aligned_cols=249 Identities=37% Similarity=0.715 Sum_probs=228.4
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|.+++.|+||..+..+.+++.++.|+.||+.|- .|+.|++|+|+|||||||||++|+|+|+..++.||.|-|++|
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3467999999999999999999999999999999987 799999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC--CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS--GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~--~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
..+|+|+...-+|++|+.|+....|||||||||++.+.|-.. +..+ ...|.+-.|+++|||+.. .+++-|+.||||
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdn-evqrtmleli~qldgfdp-rgnikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDN-EVQRTMLELINQLDGFDP-RGNIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcH-HHHHHHHHHHHhccCCCC-CCCeEEEeecCC
Confidence 999999999999999999999999999999999999887532 2222 346777789999999964 689999999999
Q ss_pred CCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002159 823 PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKV 902 (958)
Q Consensus 823 p~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~ 902 (958)
|+.|||||+||||+|+.++|.+ ||.+.|..||++|.+.+....|+.++-||+.| .+-|||||+.+|.+|.+.|++..-
T Consensus 326 pdtldpallrpgrldrkvef~l-pdlegrt~i~kihaksmsverdir~ellarlc-pnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGL-PDLEGRTHIFKIHAKSMSVERDIRFELLARLC-PNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCcCHhhcCCcccccceeccC-CcccccceeEEEeccccccccchhHHHHHhhC-CCCcchHHHHHHHHhhHHHHHHHh
Confidence 9999999999999999999999 99999999999999999999999999999999 899999999999999999997642
Q ss_pred cccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 903 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
...|..||.+|..++.
T Consensus 404 -----------------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 404 -----------------KVATEKDFLDAVNKVV 419 (435)
T ss_pred -----------------hhhhHHHHHHHHHHHH
Confidence 1468899999998764
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=386.21 Aligned_cols=261 Identities=36% Similarity=0.651 Sum_probs=234.0
Q ss_pred CCCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccch
Q 002159 665 GAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 743 (958)
Q Consensus 665 ~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~ 743 (958)
...+.|.++|+||||++.+|+.+.+.+.+|+.+++.|. .|+.+++++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34567999999999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC-CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 744 LINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~-~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
+..+|+|+++..++++|..|+..+||||||||+|.++.+|..... ......+++.++|.+||++.. ..+++||+|||+
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN~ 293 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATNR 293 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC-CCCEEEEEecCC
Confidence 999999999999999999999999999999999999988753221 122456889999999999864 468999999999
Q ss_pred CCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002159 823 PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKV 902 (958)
Q Consensus 823 p~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~ 902 (958)
|+.||||++||||||+.|+|++ |+.++|..||+.+++++.+..++++..+|.. |+|||||||.++|++|++.|+++.
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~-P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~-t~g~sgaDI~~l~~eA~~~A~r~~- 370 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPL-PDRRQKRLIFQTITSKMNLSEEVDLEDFVSR-PEKISAADIAAICQEAGMQAVRKN- 370 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCC-cCHHHHHHHHHHHHhcCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 9999999999999999999997 8999999999999999999999999999999 699999999999999999999773
Q ss_pred cccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHH
Q 002159 903 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKY 946 (958)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y 946 (958)
...|+++||++|++++.... ..++..|
T Consensus 371 ----------------~~~i~~~df~~A~~~v~~~~-~~~~~~~ 397 (398)
T PTZ00454 371 ----------------RYVILPKDFEKGYKTVVRKT-DRDYDFY 397 (398)
T ss_pred ----------------CCccCHHHHHHHHHHHHhcc-ccchhcc
Confidence 12699999999999986653 3334443
No 21
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-41 Score=372.12 Aligned_cols=275 Identities=34% Similarity=0.610 Sum_probs=232.5
Q ss_pred CCCccccc--cccccccccc-cceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc-eeeeccch
Q 002159 669 VPNVKWED--VGGLEDVKKS-ILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-FLSVKGPE 743 (958)
Q Consensus 669 ~p~v~~~d--i~Gl~~vk~~-l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-~i~v~~~~ 743 (958)
.|...|++ |||++.--.. .+.+.......|+..+ .|++.-+|||||||||||||++||-|.+.+++. --.|+||+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35555665 5787754332 2334444456677776 699999999999999999999999999999753 45689999
Q ss_pred hhhccccchhhhHHHHHHHHHhc--------CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEE
Q 002159 744 LINMYIGESEKNVRDIFQKARSA--------RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLF 815 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~~~--------~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~ 815 (958)
++++|+|++|+++|.+|..|.+- .--||+|||||+++.+||+.+++.|+.+.++||||+.|||+.. -++++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-LNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-LNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-hhcEE
Confidence 99999999999999999998641 2249999999999999999888889999999999999999964 68999
Q ss_pred EEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc----cCCCCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 816 IIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF----KLLEDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 816 VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~----~~~~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
|||.|||.|+||.||+|||||...+++.+ ||++.|.+|+++|++++ .+..|||+.+||.. |.+||||+|+.+++
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsL-PDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l-TKNfSGAEleglVk 449 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISL-PDEKGRLQILKIHTKRMRENNKLSADVDLKELAAL-TKNFSGAELEGLVK 449 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeC-CCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH-hcCCchhHHHHHHH
Confidence 99999999999999999999999999999 89999999999999887 47889999999999 69999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCC--CCHHHHHHHHH
Q 002159 892 DAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS--LSMAELKKYEL 948 (958)
Q Consensus 892 ~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps--~s~~~l~~y~~ 948 (958)
.|...|+.|.++.... ............|+++||..|+..++|. +|+++++.|..
T Consensus 450 sA~S~A~nR~vk~~~~--~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK--VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHHhhhccCcc--eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 9999999998865411 1111122345689999999999999997 58999988765
No 22
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-40 Score=379.93 Aligned_cols=245 Identities=39% Similarity=0.723 Sum_probs=222.9
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
...++|.|+.|.+..|+++.+.+.. ++.|..|. .|.+-++|++|+||||||||+||||+|++.+.||+++++++++.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568899999999999999888754 55666665 588899999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
|+|-..+.+|++|.+|++.+||||||||+|++..+|+.+ +.....-+..+||||.||||+.. ..+|+|+++|||||.+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcccc
Confidence 999999999999999999999999999999999999754 33333455699999999999974 5789999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
||||+||||||+.|.++. ||-..|++|++.|.++.+++.++++..+|+. |.||+|||+.+++++|++.|.|+..
T Consensus 302 D~ALlRpgRFDRqI~V~~-PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~-tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 302 DPALLRPGRFDRQILVEL-PDIKGREQILKVHAKNKPLAEDVDLKKIARG-TPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred hHhhcCCCCcceeeecCC-cchhhHHHHHHHHhhcCCCCCcCCHHHHhhh-CCCcccchHhhhHHHHHHHHHHhcC----
Confidence 999999999999999998 9999999999999999999999999999999 5999999999999999999998852
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHh
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
..|++.||.+|+.++
T Consensus 376 -------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 -------------KEITMRDIEEAIDRV 390 (596)
T ss_pred -------------eeEeccchHHHHHHH
Confidence 358899999999874
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.3e-39 Score=370.85 Aligned_cols=256 Identities=43% Similarity=0.729 Sum_probs=232.6
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|.+.|+++||++.+++.+.+.+.+|+.+++.|. .|+.++.++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 4567889999999999999999999999999999997 699999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCc-chHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~-~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
..+|+|+++..++.+|+.|+..+||||||||+|.+++.|+..+.++ ....+.+.+++.+++++.. .++++||+|||++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~VI~aTn~~ 280 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-RGNVKIIAATNRI 280 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC-CCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998876543322 2346778899999998864 4689999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.+|+|++||||||+.|+|++ |+.++|.+||+.++++.++..++++..+|.. |+||+|+||.++|++|++.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~-P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~-t~g~sgadl~~l~~eA~~~a~~~~-- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPL-PDEEGRLEILKIHTRKMNLADDVDLEELAEL-TEGASGADLKAICTEAGMFAIRDD-- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECC-CCHHHHHHHHHHHhccCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999997 8999999999999999999889999999999 599999999999999999999762
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHH
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMA 941 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~ 941 (958)
...|+.+||.+|+.+++|+-..+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12589999999999999975443
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=330.21 Aligned_cols=244 Identities=32% Similarity=0.557 Sum_probs=214.3
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
..++++++|+.|.+..|+...- +...+..|+.| +-..++++|||||||||||++|||+|++.+.+|+.++++++++.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~F--g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRL-IMEYLENPERF--GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHH-HHHHhhChHHh--cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 3577899999999999986532 22336677777 44568899999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
|+|+..+.++++|++|++.+|||+||||+|+++-.|..+.-.+.+ ..++|.||++|||+.+ ..+|+.|+|||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~e-neGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKE-NEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCccc-CCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999988865444443 6899999999999985 67899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHH-HHHHHHHHHHHHHhcccC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYA-LCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~-l~~~A~~~A~~r~~~~~~ 906 (958)
||++. ||...|+|.+ |+.++|..|++.+.+++++.-+.++..++++ |.||||+||.. +.+.|...|+.+.
T Consensus 269 ~aiRs--RFEeEIEF~L-P~~eEr~~ile~y~k~~Plpv~~~~~~~~~~-t~g~SgRdikekvlK~aLh~Ai~ed----- 339 (368)
T COG1223 269 PAIRS--RFEEEIEFKL-PNDEERLEILEYYAKKFPLPVDADLRYLAAK-TKGMSGRDIKEKVLKTALHRAIAED----- 339 (368)
T ss_pred HHHHh--hhhheeeeeC-CChHHHHHHHHHHHHhCCCccccCHHHHHHH-hCCCCchhHHHHHHHHHHHHHHHhc-----
Confidence 99999 9999999999 8889999999999999999999999999999 69999999975 5567777777552
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHhCCC
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLRELSPS 937 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 937 (958)
...|+.+||+.|+++-+++
T Consensus 340 ------------~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 340 ------------REKVEREDIEKALKKERKR 358 (368)
T ss_pred ------------hhhhhHHHHHHHHHhhccc
Confidence 2258899999999987765
No 25
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=337.70 Aligned_cols=239 Identities=22% Similarity=0.296 Sum_probs=212.5
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.+++..++.+..+.+++|+.||+.| ++.+|+|||||||||||||+||||+|+++++.|+.+.+++|+.+|.|+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 678889888888888889999999988 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|+.|+..+||||||||||+++.+|...+ .+...++++.+-+++.| +++...++
T Consensus 231 RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-----t~gDrEVQRTmleLL~q----------------lDGFD~~~ 289 (406)
T COG1222 231 RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-----TSGDREVQRTMLELLNQ----------------LDGFDPRG 289 (406)
T ss_pred HHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-----CCchHHHHHHHHHHHHh----------------ccCCCCCC
Confidence 9999999999999999999999999999875543 23456788777777554 33444589
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+|-||+|||+++.|||+++| ||++.|++|.||+++|.+||+.|++++.. ..|++ ++.+|+.+.||+|+|+.++
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCchHHHHHH
Confidence 99999999999999999998 99999999999999999999999988754 44554 7899999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
|.+|+|.|++.. ...++++||.+|.+++..
T Consensus 365 ctEAGm~AiR~~----------------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 365 CTEAGMFAIRER----------------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHhHHHHHhc----------------------------cCeecHHHHHHHHHHHHh
Confidence 999999999853 456889999999987754
No 26
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=362.40 Aligned_cols=277 Identities=39% Similarity=0.634 Sum_probs=245.1
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
.+++.|+|++|++.+|+.+.+.+.||+..++.|..-..+.+++||+||||+|||+|++|||.|+++.|+.++++.|.++|
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 46789999999999999999999999999999986667788999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC-CCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS-SQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~-~~~v~VI~aTNrp~~ld 827 (958)
+|++|+.+|.+|+-|+..+|+|+||||+|+++.+|.. .......|+..++|.++++.... .++|+||||||+|+.+|
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 9999999999999999999999999999999999943 34456689999999999987643 34899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc-cCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~-~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
.|++| ||.+.+|+|+ ||.+.|..+++.++++. ....+.+++.||+. |+||+|+||.++|++|++.-++..-....
T Consensus 305 ea~~R--rf~kr~yipl-Pd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~-Tegysgsdi~~l~kea~~~p~r~~~~~~~ 380 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPL-PDYETRSLLWKQLLKEQPNGLSDLDISLLAKV-TEGYSGSDITALCKEAAMGPLRELGGTTD 380 (428)
T ss_pred HHHHH--HhhceeeecC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH-hcCcccccHHHHHHHhhcCchhhcccchh
Confidence 99999 9999999998 89999999999999876 34456789999999 69999999999999999988876533100
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
-..........++..||++|++.++|++|+..+++|++|..+|..
T Consensus 381 ----~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 381 ----LEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred ----hhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 011222344579999999999999999999999999999999964
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=365.39 Aligned_cols=250 Identities=38% Similarity=0.662 Sum_probs=227.0
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|.++|+||||++..++.+.+.+.+|+.++++|. .++.++.++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 3456889999999999999999999999999999988 699999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCc-chHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~-~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.++|.|+.+..++.+|..|+...||||||||+|.++.+|......+ ....+.+.++|.+||++.. ..++.||+|||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecCCh
Confidence 9999999999999999999999999999999999998875432221 2345778899999999854 4689999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.|||+++||||||+.|+|++ |+.++|.+||+.+++++.+..++++..++.. ++|||||||.++|++|++.|+++.
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~-Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~-t~g~sgAdI~~i~~eA~~~Alr~~-- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPN-PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMA-KDELSGADIKAICTEAGLLALRER-- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCC-CCHHHHHHHHHHHHhcCCCCcCcCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999997 9999999999999999999999999999999 599999999999999999999873
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
...|+++||.+|+.++.
T Consensus 409 ---------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ---------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ---------------CCccCHHHHHHHHHHHH
Confidence 12599999999999874
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=354.14 Aligned_cols=256 Identities=42% Similarity=0.728 Sum_probs=236.2
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
+.+. .++||+......+.+.+.+|+.++..+. .+++++.++|+|||||||||.+++++|++.++.++.+++++++.+|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4566 7899999999999999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcC-CcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSAR-PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~-P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
.|++|+++|++|+.|...+ |++|||||+|+++++|....+ +..|+++||++.|||+.. ..+++|++|||||+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999999875432 678999999999999973 57899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
|+++| ||||+.+.+++ |+...|.+|++.++++++...++++..+|.. |+||+||||.++|++|++.|+++
T Consensus 335 ~alRR-gRfd~ev~Igi-P~~~~RldIl~~l~k~~~~~~~~~l~~iA~~-thGyvGaDL~~l~~ea~~~~~r~------- 404 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGI-PGSDGRLDILRVLTKKMNLLSDVDLEDIAVS-THGYVGADLAALCREASLQATRR------- 404 (693)
T ss_pred hhhhc-CCCcceeeecC-CCchhHHHHHHHHHHhcCCcchhhHHHHHHH-ccchhHHHHHHHHHHHHHHHhhh-------
Confidence 99999 99999999999 8999999999999999999889999999999 59999999999999999999987
Q ss_pred CCCccccccCCcccccHHHHHHHHHHhCCCC-----------CHHHHHHHHHHHHHhhc
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLRELSPSL-----------SMAELKKYELLRDQFEG 955 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~~ps~-----------s~~~l~~y~~~~~~~~~ 955 (958)
++++|..|+..++||. +|+++.-||+++.+++.
T Consensus 405 ---------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~ 448 (693)
T KOG0730|consen 405 ---------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQ 448 (693)
T ss_pred ---------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHH
Confidence 3567777777777754 79999999998888763
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.9e-36 Score=358.23 Aligned_cols=249 Identities=38% Similarity=0.742 Sum_probs=221.9
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|.++|+|++|++.+|+.+.+.+.+ +.+++.+. .+...++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346789999999999999999887765 67777766 5788899999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
+.|.|++++.++++|+.|+..+||||||||+|.++.+|+.. +.......+++++||.+||++.. ..+++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCChh
Confidence 99999999999999999999999999999999999887642 11223456899999999999864 46799999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.||||++||||||+.|++++ |+.++|.+|++.++++.++..++++..+|.. |.||||+||.++|++|+..|+++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~-Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~-t~G~sgadl~~l~~eA~~~a~~~~--- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDL-PDIKGREEILKVHAKNKKLAPDVDLKAVARR-TPGFSGADLANLLNEAALLAARKN--- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCC-CCHHHHHHHHHHHHhcCCCCcchhHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999997 8999999999999999888889999999999 599999999999999999887652
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
...|+.+||++|+..+..
T Consensus 280 --------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 --------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred --------------CCCCCHHHHHHHHHHHhc
Confidence 125899999999998754
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.9e-36 Score=351.20 Aligned_cols=252 Identities=38% Similarity=0.678 Sum_probs=211.9
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------- 735 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------- 735 (958)
..+.|.++|++|||++..++.+.+.+.+|+.+++.|. .++.+++++|||||||||||++||++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3567899999999999999999999999999999998 699999999999999999999999999998643
Q ss_pred -eeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC
Q 002159 736 -FLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 810 (958)
Q Consensus 736 -~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~ 810 (958)
|+.++++++.++|+|++++.++.+|+.|+.. .||||||||+|+++++|+.+. +++...+++++||++|||+..
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~~- 330 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVES- 330 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhccccc-
Confidence 7788999999999999999999999999864 699999999999998886432 334457889999999999864
Q ss_pred CCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh-ccCCC---------CcCHHHHHhh----
Q 002159 811 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK-FKLLE---------DVSLYSIAKK---- 876 (958)
Q Consensus 811 ~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~-~~~~~---------d~~l~~la~~---- 876 (958)
..+++||+|||+++.||||++||||||..|+|++ |+.++|.+||+.++.. .++.. ..++..++++
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~-Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIER-PDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCC-CCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999997 8999999999998764 34411 1122222221
Q ss_pred ------------------------CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 877 ------------------------CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 877 ------------------------~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
.++.+|||+|.++|.+|...|+++.+.. ....|+++|+..|+.
T Consensus 410 ~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------------~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 410 LYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------------GQVGLRIEHLLAAVL 476 (512)
T ss_pred HhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------------CCcCcCHHHHHHHHH
Confidence 1466889999999999999999887632 113689999999997
Q ss_pred H
Q 002159 933 E 933 (958)
Q Consensus 933 ~ 933 (958)
.
T Consensus 477 ~ 477 (512)
T TIGR03689 477 D 477 (512)
T ss_pred H
Confidence 5
No 31
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=318.98 Aligned_cols=411 Identities=19% Similarity=0.282 Sum_probs=290.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCcccccchhchHHHHHHHHHHhhcC--------CCeEEee
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-VVEYSCHNLMASSERKTSAALAQAFNTAQSY--------SPTILLL 462 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~-~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~--------~P~IL~i 462 (958)
++++.-+|||||||||||||.+||.|...|++. --.||++++..+|.|++|.++|..|..|+.. .--||++
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 466777899999999999999999999999864 3557999999999999999999999998732 2358999
Q ss_pred cchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc
Q 002159 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR 542 (958)
Q Consensus 463 Deid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr 542 (958)
||||++|..|.. ..+..+....+ .+++ +..|++...-.+++|||-||+.+-+|++|+|
T Consensus 331 DEiDAICKqRGS---~~g~TGVhD~V---VNQL----------------LsKmDGVeqLNNILVIGMTNR~DlIDEALLR 388 (744)
T KOG0741|consen 331 DEIDAICKQRGS---MAGSTGVHDTV---VNQL----------------LSKMDGVEQLNNILVIGMTNRKDLIDEALLR 388 (744)
T ss_pred hhhHHHHHhcCC---CCCCCCccHHH---HHHH----------------HHhcccHHhhhcEEEEeccCchhhHHHHhcC
Confidence 999999985533 33333443333 3343 2455666667899999999999999999998
Q ss_pred --cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCC
Q 002159 543 --CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNE 620 (958)
Q Consensus 543 --rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~ 620 (958)
||.-.+++..|||+.|++|+++|++++.. +.-.+.+.+++++|..|..|+++.+.-|++.|.-.|+.|.... ....
T Consensus 389 PGRlEVqmEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~-~~~~ 466 (744)
T KOG0741|consen 389 PGRLEVQMEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA-GGKV 466 (744)
T ss_pred CCceEEEEEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc-Ccce
Confidence 89889999999999999999999987654 2233344568999999999999999999999998888775321 1000
Q ss_pred CCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhh
Q 002159 621 PGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDL 700 (958)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~ 700 (958)
...........+++.||..||+.+++.. +..+..-.++ -.+|+-.--..+... +.+..+
T Consensus 467 ------------~~~~~~~e~lkV~r~DFl~aL~dVkPAF----G~see~l~~~-~~~Gmi~~g~~v~~i----l~~G~l 525 (744)
T KOG0741|consen 467 ------------EVDPVAIENLKVTRGDFLNALEDVKPAF----GISEEDLERF-VMNGMINWGPPVTRI----LDDGKL 525 (744)
T ss_pred ------------ecCchhhhheeecHHHHHHHHHhcCccc----CCCHHHHHHH-HhCCceeecccHHHH----HhhHHH
Confidence 0111222467899999999999775432 2111000000 011111000011111 111111
Q ss_pred hh-----cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchh----hhHHHHHHHHHhcCCcEE
Q 002159 701 FS-----SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE----KNVRDIFQKARSARPCVI 771 (958)
Q Consensus 701 ~~-----~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese----~~vr~lf~~A~~~~P~IL 771 (958)
+- ....+-..+||.||||+|||+||-.+|...+.||+.+-.++-+ +|-+| ..++.+|+.|.+..-+||
T Consensus 526 lv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsii 602 (744)
T KOG0741|consen 526 LVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSII 602 (744)
T ss_pred HHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEE
Confidence 11 1223445699999999999999999999999999988766543 44433 358999999999988999
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCCh-hhcCcCCccceeeccCCCCHHH
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP-ALLRPGRFDKLLYVGVNSDVSY 850 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldp-aLlrpgRfd~~I~v~~ppd~~~ 850 (958)
++|+++.|..-- .-...+...++..|+-.+........+.+|++||.+-+.|.. .++. -|+..|.||--...+.
T Consensus 603 vvDdiErLiD~v---pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 603 VVDDIERLLDYV---PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQ 677 (744)
T ss_pred EEcchhhhhccc---ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHH
Confidence 999999987311 111235567888888888877666668999999988765432 4555 7899999985233344
Q ss_pred HHHHH
Q 002159 851 RERVL 855 (958)
Q Consensus 851 r~~Il 855 (958)
-.+++
T Consensus 678 ~~~vl 682 (744)
T KOG0741|consen 678 LLEVL 682 (744)
T ss_pred HHHHH
Confidence 44443
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.3e-35 Score=338.51 Aligned_cols=249 Identities=47% Similarity=0.792 Sum_probs=224.6
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|.+.|++++|++.+++.+.+.+.+|+.+++.|. .|+.++.+++||||||||||++|+++|++++.+|+.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 4467889999999999999999999999999999887 589999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
..+|+|+.+..++.+|+.|+...|+||||||+|.+...|.....+ .....+.+.+++.+++++.. ..+++||+|||++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-RGNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEecCCh
Confidence 999999999999999999999999999999999999877543222 22345778899999998753 4689999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.+|++++||||||+.|+|++ |+.++|..|++.+.++..+..++++..+|+. |+||+|+||.++|++|++.|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~-P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~-t~g~sg~dl~~l~~~A~~~a~~~~-- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPL-PDFEGRLEILKIHTRKMKLAEDVDLEAIAKM-TEGASGADLKAICTEAGMFAIREE-- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCC-cCHHHHHHHHHHHHhcCCCCccCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999997 8999999999999999998888999999999 599999999999999999999763
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
...|+.+||.+|+.++
T Consensus 348 ---------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------CCccCHHHHHHHHHHh
Confidence 1259999999999875
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=319.33 Aligned_cols=246 Identities=37% Similarity=0.665 Sum_probs=221.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhc-CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~-~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
-+++++.+||+..+..++.+.+++|+..+++|.. ++++|.+++||||||+|||.+|+++|..++.||+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 4578999999999999999999999999999985 999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcc-hHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~-~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
+||+.+.+|+.|..|+...|||||+||||++.+.|...+.+.. ...+.+-.|+++|||+.. ..+|-+|+|||+|+.||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~-l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT-LHRVKTIMATNRPDTLD 285 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-cccccEEEecCCccccc
Confidence 9999999999999999999999999999999998855443322 234556677788888864 57899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
|||+||||+|+.+++|+ |....|..|+|.+...+.....++.+.+.+. .+||.|+|+++.|++|.+.|+++.
T Consensus 286 paLlRpGRldrk~~iPl-pne~~r~~I~Kih~~~i~~~Geid~eaivK~-~d~f~gad~rn~~tEag~Fa~~~~------ 357 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPL-PNEQARLGILKIHVQPIDFHGEIDDEAILKL-VDGFNGADLRNVCTEAGMFAIPEE------ 357 (388)
T ss_pred hhhcCCccccceeccCC-cchhhceeeEeeccccccccccccHHHHHHH-HhccChHHHhhhcccccccccchh------
Confidence 99999999999999999 8899999999999999998999999999998 699999999999999999998653
Q ss_pred CCCccccccCCcccccHHHHHHHHHHhC
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
...+-++||..+.+++.
T Consensus 358 -----------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -----------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -----------hHHHhHHHHHHHHHHHH
Confidence 12467899999998753
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-36 Score=360.77 Aligned_cols=265 Identities=38% Similarity=0.676 Sum_probs=229.0
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccch
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPE 743 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~ 743 (958)
..+.|+++||++.++..+++++..|+.||+.|. +++.|++|+||+||||||||+.|+++|..| +..|+.-+|++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 467899999999999999999999999999998 799999999999999999999999999988 35688899999
Q ss_pred hhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 744 LINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.+++|+|+.|+.+|.+|+.|+...|+||||||||.+++.|.... ......+++.||..|||+.. .+.|+||||||||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGlds-RgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDS-RGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCC-CCceEEEcccCCc
Confidence 99999999999999999999999999999999999999996432 33456899999999999964 6899999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKV 902 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~ 902 (958)
+.+||||+||||||+.+||++ |+.++|..|+.+++++..-.. ..-+..+|+. |.||-||||+++|.+|++.|++|..
T Consensus 417 da~dpaLRRPgrfdref~f~l-p~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~-t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPL-PDVDARAKILDIHTRKWEPPISRELLLWLAEE-TSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred cccchhhcCCcccceeEeeeC-CchHHHHHHHHHhccCCCCCCCHHHHHHHHHh-ccccchHHHHHHHHHHhhhhhcccc
Confidence 999999999999999999999 889999999999999875222 2335788998 5999999999999999999999865
Q ss_pred cccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCH
Q 002159 903 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSM 940 (958)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~ 940 (958)
-..-....... .+.....|+.+||..|+.+..|+...
T Consensus 495 Pq~y~s~~kl~-~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLL-IDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred Ceeeccccccc-ccchhhhhhhHhhhhhhhccCCCCCc
Confidence 43322111111 11222348899999999999988654
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6.3e-35 Score=362.55 Aligned_cols=206 Identities=19% Similarity=0.333 Sum_probs=175.1
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc----------cc---------------------
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY----------IG--------------------- 750 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~----------~G--------------------- 750 (958)
..|+.+++||||+||||||||+||||+|++++.+|+.+++++++.+| +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 35889999999999999999999999999999999999999998765 12
Q ss_pred ----------chhh--hHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--CCCCcEEE
Q 002159 751 ----------ESEK--NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--DSSQDLFI 816 (958)
Q Consensus 751 ----------ese~--~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--~~~~~v~V 816 (958)
+++. .++.+|+.|++.+||||||||||+++.+. +. ...+++||++|||.. ....+|+|
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s~---~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----SN---YLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----cc---eehHHHHHHHhccccccCCCCCEEE
Confidence 2223 38999999999999999999999998652 11 124899999999874 23568999
Q ss_pred EEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHH--HhhccCCCC-cCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 817 IGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL--TRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 817 I~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~--~~~~~~~~d-~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
|||||+|+.|||||+||||||+.|+|+. |+..+|++++..+ ++++++..+ +++..+|+. |.|||||||+++|++|
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~-Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~-T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRR-LLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSI-TMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCC-CCchhHHHHHHHHHhhcCCCCCcccccHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998 7788888888865 456666644 689999999 6999999999999999
Q ss_pred HHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 894 WFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 894 ~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
++.|+++.- ..|+.+||..|+.++
T Consensus 1854 aliAirq~k-----------------s~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1854 LSISITQKK-----------------SIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHcCC-----------------CccCHHHHHHHHHHH
Confidence 999998741 257889999998764
No 36
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.3e-34 Score=346.25 Aligned_cols=245 Identities=38% Similarity=0.685 Sum_probs=217.9
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
.+.++|+|++|++.+|+.+.+.+.+ +..++.|. .+...++++||+||||||||++|+++|++++.+|+.++++++..+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3567899999999999999887654 56666665 578889999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCC-CCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~-~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+.|.....++.+|+.|+..+||||||||+|.+...|+... ........++++||.+||++.. ..+++||+|||+|+.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~-~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG-NKGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-CCCeeEEEecCchHhh
Confidence 9999999999999999999999999999999998876432 2233456789999999999864 4689999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
|||++||||||+.|++++ |+.++|..||+.++++..+..++++..+|.+ |.||+|+||.++|++|+..|.++.
T Consensus 335 D~ALlRpGRFd~~I~v~l-Pd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~-t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 335 DAALLRPGRFDRQITVSL-PDREGRLDILKVHARNKKLSPDVSLELIARR-TPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhccccCceEEEECC-CCHHHHHHHHHHHHhhcccchhHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 999999999999999997 8999999999999999888889999999999 599999999999999999988663
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHh
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
...|+++||++|+.++
T Consensus 408 ------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCCcCHHHHHHHHHHH
Confidence 1258999999999887
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-33 Score=348.39 Aligned_cols=265 Identities=44% Similarity=0.760 Sum_probs=233.6
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
.+.++|+|+||++.+++.+.+.+.+|+.+++.|. .++.++.+++||||||||||++|+++|++++.+|+.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3678999999999999999999999999999987 689999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
|.|++++.++.+|+.|....|+||||||+|.++++|+.. .++...+++++|++.|+++.. ...++||+|||+|+.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~-~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKG-RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC--cchHHHHHHHHHHHHhhcccc-CCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999999887543 234557899999999999864 46899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
++++|+||||+.+++++ |+.++|.+|++.+.+.+++..++++..+++. |+||+|+|+.++|++|++.|++|.+.....
T Consensus 329 ~al~r~gRfd~~i~i~~-P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~-t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 329 PALRRPGRFDREIVIRV-PDKRARKEILKVHTRNMPLAEDVDLDKLAEV-THGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred HHHhCchhccEEEEeCC-cCHHHHHHHHHHHhcCCCCccccCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999997 7999999999999999999889999999999 599999999999999999999987642211
Q ss_pred CCCc--cccccCCcccccHHHHHHHHHHhCCCC
Q 002159 908 NSDS--SRIDQADSVVVEYDDFVKVLRELSPSL 938 (958)
Q Consensus 908 ~~~~--~~~~~~~~~~i~~~df~~al~~~~ps~ 938 (958)
.... ...+......++++||.+|++.++|+.
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccc
Confidence 1000 011112334689999999999999874
No 38
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.8e-33 Score=340.31 Aligned_cols=247 Identities=39% Similarity=0.710 Sum_probs=216.9
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
....|++++|.+..++.+.+.+.+ +..+..+. .+...+++++|+||||||||+++++++++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 346789999999999988887765 33444444 4666678999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
.|..+..++.+|..|+..+||||||||+|.+..+|+.. +.......+++++||.+|||+.. ..+++||+|||+|+.||
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999888643 22223456799999999999864 56899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
||++||||||+.|+|++ |+.++|.+||+.++++.++..++++..+|+. |.|||||||.++|++|+..|+++.
T Consensus 305 ~Al~RpgRfdr~i~v~~-Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~-t~G~sgadl~~l~~eAa~~a~r~~------ 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRVPLAPDIDAAIIARG-TPGFSGADLANLVNEAALFAARGN------ 376 (644)
T ss_pred HHHhCCcccceEEEcCC-CCHHHHHHHHHHHhhcCCCCCcCCHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999998 8999999999999999999999999999999 599999999999999999998752
Q ss_pred CCCccccccCCcccccHHHHHHHHHHhCCC
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLRELSPS 937 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~~ps 937 (958)
...|+++||++|+..+.+.
T Consensus 377 -----------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 -----------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred -----------CCcccHHHHHHHHHHHhcc
Confidence 1258999999999887654
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.2e-32 Score=300.57 Aligned_cols=225 Identities=16% Similarity=0.200 Sum_probs=176.2
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHh-----cCCcEEEEcccc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARS-----ARPCVIFFDELD 777 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~-----~~P~ILfiDEiD 777 (958)
.+++++.+++||||||||||++|+++|++++.+|+.++++++.++|+||+|+.+|++|+.|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 478899999999999999999999999999999999999999999999999999999999986 469999999999
Q ss_pred cccCCCCCCCCCcchHHHHH-HHHHHhhcCCC-----------CCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCC
Q 002159 778 SLAPARGASGDSGGVMDRVV-SQMLAEIDGLN-----------DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 845 (958)
Q Consensus 778 ~l~~~r~~~~~~~~~~~rv~-~~LL~~ldg~~-----------~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~p 845 (958)
+++++|+. ....+..+++ .+|+++||+.. ....+|+||+|||+|+.|||||+||||||+.+ ++
T Consensus 223 A~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l- 297 (413)
T PLN00020 223 AGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA- 297 (413)
T ss_pred hcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC-
Confidence 99999873 2344545665 89999998731 23567999999999999999999999999975 45
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCC----CCHHHHHHHHHHHHHHHHHHHhc-ccCC--CCCccccccCC
Q 002159 846 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPN----FTGADMYALCADAWFHAAKRKVL-SSDS--NSDSSRIDQAD 918 (958)
Q Consensus 846 pd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g----~sGaDi~~l~~~A~~~A~~r~~~-~~~~--~~~~~~~~~~~ 918 (958)
|+.++|..||+.++++..+. .+++..|+..+ .| |.||--..+..++....+.+.-. .... -..........
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f-~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~ 375 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTF-PGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFE 375 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcC-CCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCC
Confidence 89999999999999998875 68899999884 55 77876666666666555544210 0000 00000112233
Q ss_pred cccccHHHHHHHHHHh
Q 002159 919 SVVVEYDDFVKVLREL 934 (958)
Q Consensus 919 ~~~i~~~df~~al~~~ 934 (958)
.+.+|.+.+.++=..+
T Consensus 376 ~~~~t~~~l~~~g~~l 391 (413)
T PLN00020 376 PPKMTLEKLLEYGNML 391 (413)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4467777777665544
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=296.87 Aligned_cols=256 Identities=20% Similarity=0.318 Sum_probs=204.1
Q ss_pred cCCCCcCCchHHHHHHHHHHhhcCCCcccCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 364 GSNDFVPLQGDTVKILASILAPTLCPSVLSL--KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 364 ~~~~~~~l~~~~~k~L~~ii~p~l~p~~~~~--~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
.|++.+++++-....+..|-.|+.||+.|+. +.+.|||||||||||||.+|||+|-+....|+.|.+++|...|.|++
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 4677888876556677777799999999964 55679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhh--
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKI-- 519 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~-- 519 (958)
|.++|.+|++|+..+|||||+||+|++++.|.+. .|..+...++.+ +++.+ +++..
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s---GDSGGVMDRVVS---QLLAE----------------LDgls~~ 807 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDSLAPNRGRS---GDSGGVMDRVVS---QLLAE----------------LDGLSDS 807 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEeccccccCccCCCC---CCccccHHHHHH---HHHHH----------------hhcccCC
Confidence 9999999999999999999999999999966544 344444444433 33221 11111
Q ss_pred hcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCC-CHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC-CChh
Q 002159 520 CRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPL-TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-FMPR 595 (958)
Q Consensus 520 ~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~P-de~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G-fv~~ 595 (958)
....|+||||||+|+-|||++.| ||+.-+.+|++ |.+.+..+++++++++.. ..|+ .|.++|+.++- |+|+
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkL-dedV----dL~eiAk~cp~~~TGA 882 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKL-DEDV----DLVEIAKKCPPNMTGA 882 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccC-CCCc----CHHHHHhhCCcCCchh
Confidence 36789999999999999999999 99999999887 457888999999988643 4444 47889999976 9999
Q ss_pred hHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 596 DLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 596 DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
|+++||..|.+.|++|....++...... .........++++||.+++++..
T Consensus 883 DlYsLCSdA~l~AikR~i~~ie~g~~~~-----------~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 883 DLYSLCSDAMLAAIKRTIHDIESGTISE-----------EEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc-----------cccCCceEEEEHHHHHHHHHhcC
Confidence 9999999999999998654443321100 01112356789999999998774
No 41
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-30 Score=308.31 Aligned_cols=377 Identities=21% Similarity=0.279 Sum_probs=269.2
Q ss_pred CCCCcCCchHHHHHHH-HHHhhcCCCcccC---CCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCcccc
Q 002159 365 SNDFVPLQGDTVKILA-SILAPTLCPSVLS---LKFRVAVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMA 435 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~-~ii~p~l~p~~~~---~~~~~~VLL~GppGtGKTTLaraIA~~lg-----~~~~~I~~~~l~s 435 (958)
++..++++. +..+|. +++.|+++|+.|. +.++++||+|||||||||+.++++|+.+. ..|+.-.+.+..+
T Consensus 264 fd~vggl~~-~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 264 FDSVGGLEN-YINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred ccccccHHH-HHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc
Confidence 445555654 445554 5579999998874 89999999999999999999999999873 3466667888999
Q ss_pred cchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhh
Q 002159 436 SSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE 515 (958)
Q Consensus 436 ~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~ 515 (958)
++.|+.+..++..|++|+.+.|+|+|+||||.+++.++. .+......+...| +..|
T Consensus 343 kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs-----kqEqih~SIvSTL-------------------LaLm 398 (1080)
T KOG0732|consen 343 KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS-----KQEQIHASIVSTL-------------------LALM 398 (1080)
T ss_pred cccCcHHHHHHHHHHHHhccCceEEeccccccccccccc-----hHHHhhhhHHHHH-------------------HHhc
Confidence 999999999999999999999999999999999997642 2223333333333 2456
Q ss_pred hhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCC
Q 002159 516 IEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM 593 (958)
Q Consensus 516 ~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv 593 (958)
++..++++|+||||||+++.++|++|| ||++++.++.|+-..|.+|+..+.++... .-....+..+|..+.||.
T Consensus 399 dGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~----~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 399 DGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP----PISRELLLWLAEETSGYG 474 (1080)
T ss_pred cCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC----CCCHHHHHHHHHhccccc
Confidence 677779999999999999999999998 89999999999999999999999987652 234567788999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCcc
Q 002159 594 PRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVK 673 (958)
Q Consensus 594 ~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~ 673 (958)
++|+.+||.+|++.++++....+........ -..+...+...+|..|+.+..+........+..|.-.
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~------------~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~ 542 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDKLL------------IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST 542 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeeccccccc------------ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc
Confidence 9999999999999999887655432211110 0011334778899999887644322211111111110
Q ss_pred ccc-cccccccccccceee-------------eccccchhh-hhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-CCcee
Q 002159 674 WED-VGGLEDVKKSILDTV-------------QLPLLHKDL-FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFL 737 (958)
Q Consensus 674 ~~d-i~Gl~~vk~~l~e~i-------------~~~l~~~~~-~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-~~~~i 737 (958)
.-. +.+....-..++..+ .+.....+. |.-.+--...+++.|..|.|-+.+.+||-+.+ +.++.
T Consensus 543 ~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~ 622 (1080)
T KOG0732|consen 543 YLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQ 622 (1080)
T ss_pred ceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchH
Confidence 000 110111111111111 000000000 11111123458899999999999999997765 67777
Q ss_pred eeccchhhhcc-ccchhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 738 SVKGPELINMY-IGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 738 ~v~~~~l~~~~-~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
+...+.++..- .+..+..+..+|..|+...|||+||-++|.++..
T Consensus 623 s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 623 SLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 77777776665 6677889999999999999999999999888743
No 42
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-30 Score=274.48 Aligned_cols=258 Identities=17% Similarity=0.285 Sum_probs=195.9
Q ss_pred CCCCcCCchHHHHHHHH-HHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~-ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
++++.++++ ..+.|.+ +++|...|+-|. .++=++||++||||||||+|||+||.+.|..|+.|+.+.+.++|-|++
T Consensus 211 W~DIagl~~-AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 211 WDDIAGLHE-AKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred hHhhcchHH-HHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch
Confidence 355566654 3444444 468999998883 244589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
++.+|-.|+.|+.++|++|||||||+|+..|...+++...+...+++.-.++.+.. . ....
T Consensus 290 EKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~---------------t----~e~~ 350 (491)
T KOG0738|consen 290 EKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG---------------T----LENS 350 (491)
T ss_pred HHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc---------------c----cccc
Confidence 99999999999999999999999999998765554333222222232221111110 0 0013
Q ss_pred CcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
.-|+|.|+||-||+||.++||||...|.++.||.+.|.++++.+++.... ..++ .++.++..+.||+|+|+..+|
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~----~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DDPV----NLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred eeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CCCc----cHHHHHHHhcCCChHHHHHHH
Confidence 45899999999999999999999999999999999999999999976543 3333 468899999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 602 ~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
++|.|.+++|....... +++ ..... .. -...++++||++|+.+.++
T Consensus 426 reAsm~~mRR~i~g~~~-----~ei-~~lak----E~-~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 426 REASMMAMRRKIAGLTP-----REI-RQLAK----EE-PKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHHHHHHhcCCc-----HHh-hhhhh----hc-cccccchhhHHHHHHHcCc
Confidence 99999999975432211 011 00000 11 1267899999999998754
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=3.8e-28 Score=299.22 Aligned_cols=427 Identities=17% Similarity=0.264 Sum_probs=277.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
..+++|+||||||||++++.+|..+ +.+++.+++..+. .++.|+.+..++.+|+++....++||||||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 3568999999999999999999987 7789999988887 467789999999999999877899999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~a 539 (958)
+|.|.......+ .......+|...+ .++.+.+||+||.. ...|++
T Consensus 283 ih~l~~~g~~~~-------~~~~~~~~L~~~l-----------------------~~g~i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 283 IHTIVGAGATSG-------GSMDASNLLKPAL-----------------------SSGKLRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred HHHHhccCCCCC-------ccHHHHHHHHHHH-----------------------hCCCeEEEEecCHHHHHHHhhhhHH
Confidence 999986321111 1112333443332 26789999999863 357999
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChh-----hHHHHHHHHHHHHHHhhcc
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPR-----DLHALVADAGANLIRKSNS 614 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~-----DL~~Lv~eA~~~a~~r~~~ 614 (958)
++|||. .+.++.|+.+++.+|++.+.......|.-.-.++.+..++..++.|.+. ---.|..+|+.....+.
T Consensus 333 l~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~-- 409 (731)
T TIGR02639 333 LSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRP-- 409 (731)
T ss_pred HHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCc--
Confidence 999995 7999999999999999987755332221112245566666666665543 22344444443221000
Q ss_pred ccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeecc
Q 002159 615 EVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLP 694 (958)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~ 694 (958)
.. .....++.+|+.+.+...... | ...+.|++...+..+++.+.+.+...
T Consensus 410 --~~--------------------~~~~~v~~~~i~~~i~~~tgi-------P-~~~~~~~~~~~l~~l~~~l~~~v~GQ 459 (731)
T TIGR02639 410 --KA--------------------KKKANVSVKDIENVVAKMAHI-------P-VKTVSVDDREKLKNLEKNLKAKIFGQ 459 (731)
T ss_pred --cc--------------------ccccccCHHHHHHHHHHHhCC-------C-hhhhhhHHHHHHHHHHHHHhcceeCc
Confidence 00 002346667777666643211 1 11233344334444443333333110
Q ss_pred ccc-------hhhhhcCC----CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc------------cccc
Q 002159 695 LLH-------KDLFSSGL----RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM------------YIGE 751 (958)
Q Consensus 695 l~~-------~~~~~~~i----~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~------------~~Ge 751 (958)
-.. -.....|+ ++...++|+||+|||||++|+++|..++.+++.++++++... |+|.
T Consensus 460 ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~ 539 (731)
T TIGR02639 460 DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGF 539 (731)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCccc
Confidence 000 00011133 223358999999999999999999999999999998886432 3333
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCC
Q 002159 752 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP 823 (958)
Q Consensus 752 se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp 823 (958)
.+ .+.+.+..+....+|+||||+|.+.+ .+.+.|+..||.-. -.-.++++|+|||..
T Consensus 540 ~~--~~~l~~~~~~~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 540 EQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred ch--hhHHHHHHHhCCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 22 23455556667778999999998752 46677777776421 113468899999874
Q ss_pred C-------------------------CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc---------CC-CCc
Q 002159 824 D-------------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK---------LL-EDV 868 (958)
Q Consensus 824 ~-------------------------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~---------~~-~d~ 868 (958)
. .+.|.++. |||.+|.|. |-+.+....|++..++... +. .+.
T Consensus 605 ~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~-pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~ 681 (731)
T TIGR02639 605 ASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFN-PLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDD 681 (731)
T ss_pred hhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcC-CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHH
Confidence 2 24566665 999999998 4889999999988775321 11 122
Q ss_pred CHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 869 SLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 869 ~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
-++.|++.. ...|-++.|+.+++.-...++.+.+..
T Consensus 682 a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~ 718 (731)
T TIGR02639 682 AKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILF 718 (731)
T ss_pred HHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHh
Confidence 245677652 345667899999998888887776653
No 44
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-29 Score=256.40 Aligned_cols=240 Identities=18% Similarity=0.300 Sum_probs=204.5
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
+++++++..+.+..+.+++|..|++.| ++.+++|||+|||||||||.++|+.|.+.+..|..+.++.++.-+.|...
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 678888888888888899999999877 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|..|+...|+||||||+|++..+|.... .....++.+.+-+++.|+ +|| .+..
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-----k~GDREVQRTMLELLNQL--------DGF--------ss~~ 309 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-----KAGDREVQRTMLELLNQL--------DGF--------SSDD 309 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhcccccccc-----ccccHHHHHHHHHHHHhh--------cCC--------CCcc
Confidence 9999999999999999999999999998764322 112345665555554432 333 3477
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
.|-|||+||+.+-+||++.| |.++.|++|.|++..|..|+++|.+++.. +.|+. ++++|+.|.+|.++...+.
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-~~DvN----feELaRsTddFNGAQcKAV 384 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-SDDVN----FEELARSTDDFNGAQCKAV 384 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-CCCCC----HHHHhhcccccCchhheee
Confidence 89999999999999999987 89999999999999999999999988754 55654 6889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhccc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~ 659 (958)
|-+|+|.++++. ...++.+||.+++..++..
T Consensus 385 cVEAGMiALRr~----------------------------atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 385 CVEAGMIALRRG----------------------------ATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ehhhhHHHHhcc----------------------------cccccHHHHHHHHHHHHHh
Confidence 999999999863 2346778888888776543
No 45
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=252.19 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=221.3
Q ss_pred HHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcC
Q 002159 271 QEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (958)
Q Consensus 271 ~~~~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~ 350 (958)
.++|+.|-+.-+.. -.|++||.+-=.. -.+...|||+.+.|+++.+. ++.|.+++..
T Consensus 50 ~~~F~~YArdQW~G-e~v~eg~ylFD~~-------------------~~pdyAfkvI~~~P~~~~i~---~st~i~vl~~ 106 (368)
T COG1223 50 PEVFNIYARDQWLG-EVVREGDYLFDTR-------------------MFPDYAFKVIRVVPSGGGII---TSTTIFVLET 106 (368)
T ss_pred HHHHHHHHHHhhcc-eeeecCceEeecc-------------------cccccceeEEEEeCCCCcee---cceEEEEecC
Confidence 45777776665543 3689999863211 12457899999999765433 3445555544
Q ss_pred CC--CCCCCCCcccccCCCCcCCchHHHHHHHHH-HhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 351 SI--PSALPPDLLISGSNDFVPLQGDTVKILASI-LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 351 ~~--~~~~~~~~~~~~~~~~~~l~~~~~k~L~~i-i~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.- .+.+-+++.+ ++.++. +..++-+.+ +..+-+|..|+-=-+++||+|||||||||++||++|++...+++.
T Consensus 107 ~~~~~~e~~~~it~---ddViGq--EeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~ 181 (368)
T COG1223 107 PREEDREIISDITL---DDVIGQ--EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLL 181 (368)
T ss_pred cchhhhhhhccccH---hhhhch--HHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEE
Confidence 21 1111112211 222222 334555544 455667888876678999999999999999999999999999999
Q ss_pred EecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccccc
Q 002159 428 YSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEES 507 (958)
Q Consensus 428 I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~ 507 (958)
+...++++.+.|.....+++.|+.|+..+|||+||||+|+|+-.|.- ....+.+.++.+.+
T Consensus 182 vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry-------QelRGDVsEiVNAL------------ 242 (368)
T COG1223 182 VKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY-------QELRGDVSEIVNAL------------ 242 (368)
T ss_pred echHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH-------HHhcccHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999863311 11223344444443
Q ss_pred CCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhh
Q 002159 508 HGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIG 587 (958)
Q Consensus 508 ~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~ 587 (958)
++.+++...+..|+.||+||+++-||+++|+||..+|++..|+.++|++|++.+++.++. ..| ..++.+++
T Consensus 243 ----LTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-pv~----~~~~~~~~ 313 (368)
T COG1223 243 ----LTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-PVD----ADLRYLAA 313 (368)
T ss_pred ----HHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-ccc----cCHHHHHH
Confidence 234556667899999999999999999999999999999999999999999999988765 223 34788999
Q ss_pred hcCCCChhhHHHH-HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 588 QTSGFMPRDLHAL-VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 588 ~t~Gfv~~DL~~L-v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
.|.||+++|+..- .+.|..+++... ...+..+|+..|+.+.
T Consensus 314 ~t~g~SgRdikekvlK~aLh~Ai~ed----------------------------~e~v~~edie~al~k~ 355 (368)
T COG1223 314 KTKGMSGRDIKEKVLKTALHRAIAED----------------------------REKVEREDIEKALKKE 355 (368)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHhc----------------------------hhhhhHHHHHHHHHhh
Confidence 9999999999754 455655555421 3356788999998864
No 46
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-29 Score=276.38 Aligned_cols=208 Identities=21% Similarity=0.261 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+....|++++.++.+|..| +-++|+||||+||||||||+|||++|++.|.+|+..+++++-.-+.|....++|..|.
T Consensus 311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~ 390 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFA 390 (752)
T ss_pred HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHH
Confidence 6778999999999999887 4688999999999999999999999999999999999999988899999999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.|+.++||||||||||++..+|.+. + .......|++++ ..|++...+..|||||||
T Consensus 391 aAk~~APcIIFIDEiDavG~kR~~~----~----~~y~kqTlNQLL----------------vEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 391 AAKARAPCIIFIDEIDAVGGKRNPS----D----QHYAKQTLNQLL----------------VEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred HHHhcCCeEEEEechhhhcccCCcc----H----HHHHHHHHHHHH----------------HHhcCcCcCCceEEEecc
Confidence 9999999999999999999866321 1 113345555553 345555668899999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|.|+.||++|.| ||++++.++.||-+.|.+|+++++++... ..|++ ++-+|+-|.||+++||+.|+..|+..+
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-~~~VD----~~iiARGT~GFsGAdLaNlVNqAAlkA 521 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-DEDVD----PKIIARGTPGFSGADLANLVNQAALKA 521 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc-ccCCC----HhHhccCCCCCchHHHHHHHHHHHHHH
Confidence 999999999998 99999999999999999999999987542 33454 577999999999999999999998877
Q ss_pred HH
Q 002159 609 IR 610 (958)
Q Consensus 609 ~~ 610 (958)
..
T Consensus 522 a~ 523 (752)
T KOG0734|consen 522 AV 523 (752)
T ss_pred Hh
Confidence 54
No 47
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-29 Score=259.33 Aligned_cols=237 Identities=20% Similarity=0.301 Sum_probs=204.1
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+++++...+++.-++.++|+.||+.+ ++++++||+|||+||||||.||+++|+...+.|+.+.+++++.+|.|+..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 567888888888889999999999766 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++++|+.|..++|+|+||||||++..+|-+.+ .+...++.+.+-+++.|+ +||. +++
T Consensus 265 klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-----SggerEiQrtmLELLNQl--------dGFd--------srg 323 (440)
T KOG0726|consen 265 KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-----SGGEREIQRTMLELLNQL--------DGFD--------SRG 323 (440)
T ss_pred HHHHHHHHHHHhcCCceEEeehhhhhccccccCC-----CccHHHHHHHHHHHHHhc--------cCcc--------ccC
Confidence 9999999999999999999999999998764322 234456666555665443 3433 388
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
.|-||.|||+.+.|||++.| |.++.|+++.||+..|..|+.+|++++.+ ..|+. ++.+...-..++++|+.++
T Consensus 324 DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl-~~dVn----le~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL-AEDVN----LEELIMTKDDLSGADIKAI 398 (440)
T ss_pred CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccch-hcccc----HHHHhhcccccccccHHHH
Confidence 99999999999999999998 89999999999999999999999988753 44554 6778777888999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
|.+|++.+++.. ...++++||.+|.+.+
T Consensus 399 ctEaGllAlRer----------------------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 399 CTEAGLLALRER----------------------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred HHHHhHHHHHHH----------------------------HhhccHHHHHHHHHHH
Confidence 999999998753 4567889999888765
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=5.7e-27 Score=285.18 Aligned_cols=432 Identities=14% Similarity=0.215 Sum_probs=272.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhcCCCeEEeecch
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSYSPTILLLRDF 465 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~~~P~IL~iDei 465 (958)
.+++|+||||||||++++.+|..+ +..++.++...++ ..+.|+.+..++.++..+....++||||||+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEI 287 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEI 287 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccH
Confidence 468999999999999999999875 4455555555555 3456788999999999888788999999999
Q ss_pred hhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhh
Q 002159 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTI 540 (958)
Q Consensus 466 d~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~al 540 (958)
|.|...... .+...++..+|+.+.. ++.+.+||+|+..+ ..|+++
T Consensus 288 h~L~g~g~~-------~~g~~d~~nlLkp~L~-----------------------~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 288 HTIIGAGAA-------SGGQVDAANLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred HHHhccCCC-------CCcHHHHHHHHHHHHh-----------------------CCCeEEEecCChHHHHHHhhccHHH
Confidence 999863211 1112344555555432 67899999998754 579999
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-HHHHHHHhhhcCC-----CChhhHHHHHHHHHHHHHHhhcc
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-EEFVKDIIGQTSG-----FMPRDLHALVADAGANLIRKSNS 614 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-~~~L~~la~~t~G-----fv~~DL~~Lv~eA~~~a~~r~~~ 614 (958)
.||| ..+.++.|+.+++..|++.+......-| ++.. +..+...+..+.. +.+...-.|+.+|+..... ..
T Consensus 338 ~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h-~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~--~~ 413 (758)
T PRK11034 338 ARRF-QKIDITEPSIEETVQIINGLKPKYEAHH-DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL--MP 413 (758)
T ss_pred HhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhcc-CCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhcc--Cc
Confidence 9999 5899999999999999998876554422 3322 3334444433333 5566677777777654311 00
Q ss_pred ccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCC------CCCccccccccccccccccc
Q 002159 615 EVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPK------VPNVKWEDVGGLEDVKKSIL 688 (958)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~------~p~v~~~di~Gl~~vk~~l~ 688 (958)
.. .. ...++.+|+.+.+..........+...+ ....--..+.|.+.+++.+.
T Consensus 414 ~~-~~---------------------~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~ 471 (758)
T PRK11034 414 VS-KR---------------------KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALT 471 (758)
T ss_pred cc-cc---------------------ccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHH
Confidence 00 00 0112333333333221110000000000 00000123667777777776
Q ss_pred eeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-----ccccchhhh-----HHH
Q 002159 689 DTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-----MYIGESEKN-----VRD 758 (958)
Q Consensus 689 e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-----~~~Gese~~-----vr~ 758 (958)
+.+...... +...-+|...++|+||||||||++|+++|..++.+|+.++++++.. +++|..... -..
T Consensus 472 ~~i~~~~~g---l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~ 548 (758)
T PRK11034 472 EAIKMSRAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL 548 (758)
T ss_pred HHHHHHhcc---ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccch
Confidence 655321100 0001123346999999999999999999999999999999887642 333322111 123
Q ss_pred HHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCC-------
Q 002159 759 IFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP------- 823 (958)
Q Consensus 759 lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp------- 823 (958)
+....+....+||||||+|++. ..+.+.|+..||.-. ..-.++++|+|||.-
T Consensus 549 L~~~v~~~p~sVlllDEieka~-------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~ 615 (758)
T PRK11034 549 LTDAVIKHPHAVLLLDEIEKAH-------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_pred HHHHHHhCCCcEEEeccHhhhh-------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhc
Confidence 3444455666999999999885 247778888777321 112578899999932
Q ss_pred ------------------CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc-------cCCCCcC---HHHHHh
Q 002159 824 ------------------DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------KLLEDVS---LYSIAK 875 (958)
Q Consensus 824 ------------------~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~-------~~~~d~~---l~~la~ 875 (958)
..+.|.++. |+|.+|.|+ |.+.+....|+...++.. .+.-.++ ++.|++
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~-~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 616 SIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD-HLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAE 692 (758)
T ss_pred ccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHH
Confidence 124577776 999999998 488888888887665422 2221222 455665
Q ss_pred hC-CCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 876 KC-PPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 876 ~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.. ...|-++.|+.++++-....+.+.+..
T Consensus 693 ~~~~~~~GAR~l~r~i~~~l~~~la~~il~ 722 (758)
T PRK11034 693 KGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_pred hCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 53 233446799999998888888777654
No 49
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-28 Score=248.58 Aligned_cols=220 Identities=17% Similarity=0.267 Sum_probs=190.4
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.++++-..++..+..++|+.|...+ ++.+++|||||||||||||+|+|++|+...+.|+.+.+++++.+|-|+..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 556677656667777888999887665 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|..|+.++|+|+||||+|+++.++- ..+.+...++.++|-+++.| |++.....
T Consensus 235 rmvrdvfrlakenapsiifideidaiatkrf-----daqtgadrevqril~ellnq----------------mdgfdq~~ 293 (408)
T KOG0727|consen 235 RMVRDVFRLAKENAPSIIFIDEIDAIATKRF-----DAQTGADREVQRILIELLNQ----------------MDGFDQTT 293 (408)
T ss_pred HHHHHHHHHHhccCCcEEEeehhhhHhhhhc-----cccccccHHHHHHHHHHHHh----------------ccCcCccc
Confidence 9999999999999999999999999998763 23455667888877777554 33344477
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+|-||.+||+.+.+||++.| |.++.|+++.||.+|+.-++...++++.+ ..++ +|+.+..+-+..+++|+.++
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-s~~v----dle~~v~rpdkis~adi~ai 368 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-SDEV----DLEDLVARPDKISGADINAI 368 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-Cccc----CHHHHhcCccccchhhHHHH
Confidence 89999999999999999998 89999999999999999999999987753 4444 46888888999999999999
Q ss_pred HHHHHHHHHHh
Q 002159 601 VADAGANLIRK 611 (958)
Q Consensus 601 v~eA~~~a~~r 611 (958)
|++|++.+.+.
T Consensus 369 cqeagm~avr~ 379 (408)
T KOG0727|consen 369 CQEAGMLAVRE 379 (408)
T ss_pred HHHHhHHHHHh
Confidence 99999999875
No 50
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-28 Score=251.08 Aligned_cols=259 Identities=18% Similarity=0.273 Sum_probs=212.3
Q ss_pred EEcCCceEEEEcCCCCCCCCCCcccccCCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHH
Q 002159 338 RVNCTKTALVLGGSIPSALPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVV 414 (958)
Q Consensus 338 ~vd~~~T~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLa 414 (958)
.||++.|.+.++. -|++.| ++.++-.+++.+..+-.+.|++||+.| ++.++++||||||||||||.++
T Consensus 158 kidpsvtmm~vee------kpdvty---~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 158 KIDPSVTMMQVEE------KPDVTY---SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCceeEEEeec------CCCccc---ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 4677777776654 345554 445555555556666668999999877 6899999999999999999999
Q ss_pred HHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHH
Q 002159 415 RYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIRE 494 (958)
Q Consensus 415 raIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~ 494 (958)
|++|+..++.|+.+-+++++.+|.|+....++.+|+.|+...-||+|+||+|++...+-.++ .+...++.+.+-+
T Consensus 229 ravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-----~ggdnevqrtmle 303 (435)
T KOG0729|consen 229 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-----AGGDNEVQRTMLE 303 (435)
T ss_pred HHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-----CCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988664433 3445677766666
Q ss_pred hcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCccc
Q 002159 495 FTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSEL 572 (958)
Q Consensus 495 l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l 572 (958)
+..|+ +|+ ..++++-|..+||+|+.|||++.| |.++.++++.||-+.|..|+++|.+.+..
T Consensus 304 li~ql--------dgf--------dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv- 366 (435)
T KOG0729|consen 304 LINQL--------DGF--------DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV- 366 (435)
T ss_pred HHHhc--------cCC--------CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc-
Confidence 65543 333 338999999999999999999998 89999999999999999999999987754
Q ss_pred CCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHH
Q 002159 573 TSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKA 652 (958)
Q Consensus 573 ~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~a 652 (958)
+.+..++-+|+.+..-+++++...|.+|+|-+++.. ....+..||.+|
T Consensus 367 ----erdir~ellarlcpnstgaeirsvcteagmfairar----------------------------rk~atekdfl~a 414 (435)
T KOG0729|consen 367 ----ERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----------------------------RKVATEKDFLDA 414 (435)
T ss_pred ----ccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH----------------------------hhhhhHHHHHHH
Confidence 334456789999999999999999999999998753 234567788888
Q ss_pred HHhhccc
Q 002159 653 MERSKKR 659 (958)
Q Consensus 653 l~~~~~~ 659 (958)
..++.+.
T Consensus 415 v~kvvkg 421 (435)
T KOG0729|consen 415 VNKVVKG 421 (435)
T ss_pred HHHHHHH
Confidence 8876543
No 51
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-28 Score=260.57 Aligned_cols=263 Identities=21% Similarity=0.291 Sum_probs=194.9
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCcccC----CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhc
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVLS----LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERK 440 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~~----~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~ 440 (958)
..++++++..+....+.++.|+.+|+.|. .+++.|||||||||||||.+|+++|.+.|..|+.|..+.+++++.|+
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE 170 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGE 170 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHH
Confidence 45677777655555666789999999883 47789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHH-HhcCCCCCccccccCCCCchhhhhhh
Q 002159 441 TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIR-EFTEPSAEDEDEESHGYFPVKEIEKI 519 (958)
Q Consensus 441 ~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~-~l~~~l~~~~~~~~~g~~~~~~~~~~ 519 (958)
.++.++.+|..|.+.+|+||||||+|.+...| ..+ ..+..+.++ +|+. + .+|... .
T Consensus 171 ~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~--------dHEa~a~mK~eFM~-~-------WDGl~s------~ 227 (386)
T KOG0737|consen 171 AQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RST--------DHEATAMMKNEFMA-L-------WDGLSS------K 227 (386)
T ss_pred HHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccc--------hHHHHHHHHHHHHH-H-------hccccC------C
Confidence 99999999999999999999999999988754 211 122222222 2221 1 111111 1
Q ss_pred hcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 520 CRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 520 ~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+.+|+|+||||+|.++|.++.||+.+.+.+|.|+..+|..|++.+++.... ..++ ++.++|..|.||+|.||..
T Consensus 228 ~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~-e~~v----D~~~iA~~t~GySGSDLke 302 (386)
T KOG0737|consen 228 DSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL-EDDV----DLDEIAQMTEGYSGSDLKE 302 (386)
T ss_pred CCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc-Cccc----CHHHHHHhcCCCcHHHHHH
Confidence 1446999999999999999999999999999999999999999999976543 3333 4789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhh-cCcchhhhhccccHHHHHHHHHhh
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAH-NDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
+|+.|+...++.....-.. ............. ...........+.++||..+...+
T Consensus 303 lC~~Aa~~~ire~~~~~~~-~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 303 LCRLAALRPIRELLVSETG-LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred HHHHHhHhHHHHHHHhccc-chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 9999999888754322100 0000000000000 000111124678899999988854
No 52
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=242.50 Aligned_cols=236 Identities=20% Similarity=0.304 Sum_probs=199.9
Q ss_pred CCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
-.++++..+.+..+-|.+|..||+.| ++..++|+|||||||+|||.|++++|....+.|+.+++++++.+|.|+...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsr 227 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 227 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHH
Confidence 34566666666666778999999887 578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++..|-.|+.++|+|+|+||||++...+.+.+ .+..+++.+.+-+++.|+ +|| ....+
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~-----~ggdsevqrtmlellnql--------dgf--------eatkn 286 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-----SGGDSEVQRTMLELLNQL--------DGF--------EATKN 286 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCC-----CCccHHHHHHHHHHHHhc--------ccc--------ccccc
Confidence 999999999999999999999999988653322 234567777666665543 333 33778
Q ss_pred EEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
+-||.+||+.+-+||++.| |.++.|++++|+++.|.+|++.+.+++.+ .... .+..+|.+..|-+++++...|
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-~rgi----~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-TRGI----NLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-hccc----CHHHHHHhCCCCccchhhhhh
Confidence 9999999999999999998 89999999999999999999999987754 2233 468999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 602 ~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
.+|+|.+++.. ...++++||+-|..++
T Consensus 362 teagm~alrer----------------------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 362 TEAGMYALRER----------------------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hhhhHHHHHHh----------------------------hccccHHHHHHHHHHH
Confidence 99999998752 4567889998887765
No 53
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.4e-27 Score=276.12 Aligned_cols=214 Identities=20% Similarity=0.262 Sum_probs=183.1
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+....|.+++.++-+|..+ +.+.|+|+||+||||||||+||||+|++.|.+|+.+++++++..+.+....+++.+|.
T Consensus 318 eAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~ 397 (774)
T KOG0731|consen 318 EAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFP 397 (774)
T ss_pred HHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHH
Confidence 6788999999999999877 6899999999999999999999999999999999999999999888888999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.|+.++|||+||||||+++..+. +. ...+...+-+..|++++ ..||+......|+|+|+|
T Consensus 398 ~ar~~aP~iifideida~~~~r~--G~--~~~~~~~e~e~tlnQll----------------~emDgf~~~~~vi~~a~t 457 (774)
T KOG0731|consen 398 LARKNAPSIIFIDEIDAVGRKRG--GK--GTGGGQDEREQTLNQLL----------------VEMDGFETSKGVIVLAAT 457 (774)
T ss_pred HhhccCCeEEEeccccccccccc--cc--ccCCCChHHHHHHHHHH----------------HHhcCCcCCCcEEEEecc
Confidence 99999999999999999998653 10 01122334455666663 345555667889999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++.+|++++| ||++.+.++.|+..+|.+|++.|+++... + .....+.++|..|+||+|+||..+|.+|+..+
T Consensus 458 nr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a 533 (774)
T KOG0731|consen 458 NRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---D-DEDVDLSKLASLTPGFSGADLANLCNEAALLA 533 (774)
T ss_pred CCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---C-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHH
Confidence 999999999999 99999999999999999999999977543 2 12334566999999999999999999999988
Q ss_pred HHh
Q 002159 609 IRK 611 (958)
Q Consensus 609 ~~r 611 (958)
.++
T Consensus 534 ~r~ 536 (774)
T KOG0731|consen 534 ARK 536 (774)
T ss_pred HHh
Confidence 775
No 54
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=263.33 Aligned_cols=238 Identities=18% Similarity=0.283 Sum_probs=188.5
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.++++....+....+..|+.+|..+ ++.++.++|||||||||||++++++|++++.+++.+.+.++...+.++++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhH
Confidence 445555543333444455788888765 56789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|..|....|+|+||||+|.++.++.... .+...++...+.+++.+ +++.....
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-----~~~d~~~~r~l~~LL~~----------------ld~~~~~~ 283 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-----TGADREVQRILLELLNQ----------------MDGFDQTT 283 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-----CCccHHHHHHHHHHHHH----------------hhccCCCC
Confidence 9999999999999999999999999987542211 11122333444444321 11222256
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+++||+|||+++.+|++++| ||+++|.++.|+.++|.+|++.++.+... ..|+ .+..++..|+||+++|+..+
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dv----d~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEV----DLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Cccc----CHHHHHHHcCCCCHHHHHHH
Confidence 79999999999999999987 89999999999999999999999976543 3343 46889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
|++|++.++++. ...++++||.+|+....
T Consensus 359 ~~eA~~~A~r~~----------------------------~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 359 CQEAGMQAVRKN----------------------------RYVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHH
Confidence 999999988652 24678899999998764
No 55
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=264.19 Aligned_cols=219 Identities=21% Similarity=0.349 Sum_probs=181.3
Q ss_pred CCCcCCchHHHHHHHHH-HhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILASI-LAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~i-i~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
++.+++. +.++.|.+. ++|..+|..| .++.+.|||||||||||||.||.++|...+..|+.|.++++.++|.|.+
T Consensus 667 ~digg~~-~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaS 745 (952)
T KOG0735|consen 667 EDIGGLF-EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGAS 745 (952)
T ss_pred eecccHH-HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhccc
Confidence 3444444 455666554 6899999887 3567789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
|.++|.+|.+|+.+.|||+|+||+|+++++|.. |..+...++. ++++. .++|...-
T Consensus 746 Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-----DsTGVTDRVV---NQlLT----------------elDG~Egl 801 (952)
T KOG0735|consen 746 EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-----DSTGVTDRVV---NQLLT----------------ELDGAEGL 801 (952)
T ss_pred HHHHHHHHHHhhccCCeEEEeccccccCcccCC-----CCCCchHHHH---HHHHH----------------hhcccccc
Confidence 999999999999999999999999999997743 4445554443 34432 23344446
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
..|.|+|||.+|+-+||+++| |+++-+..+.|++.+|++|++.+...... +.+.+++.+|..|+||+++|+..
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~tgADlq~ 876 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGFTGADLQS 876 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCCchhhHHH
Confidence 789999999999999999998 89999999999999999999999865432 33456899999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002159 600 LVADAGANLIRKSNS 614 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~ 614 (958)
|+..|.+.+..+...
T Consensus 877 ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 877 LLYNAQLAAVHEILK 891 (952)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776543
No 56
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-27 Score=244.23 Aligned_cols=222 Identities=22% Similarity=0.303 Sum_probs=179.4
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCcccCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVLSL--KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~~~--~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
+++..++.......-+.+|+|...|..|.- ++-++||||||||||||.||+++|-+.+..|+.|+.++|++++.|+++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 456667776444444556889989988853 345899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..+++.|+.|+.+.|+||||||||.++..++. +++...+.+.. +++-|+. | . .....
T Consensus 212 kLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKT-------EfLVQMq--------G------V-G~d~~ 268 (439)
T KOG0739|consen 212 KLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKT-------EFLVQMQ--------G------V-GNDND 268 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHH-------HHHHhhh--------c------c-ccCCC
Confidence 99999999999999999999999999986532 21111111222 2222211 0 0 11257
Q ss_pred cEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
.|+|.|+||-|+.||.++||||...|.++.|+...|..+++.++...+. .-.+.+++.++++|.||+++|+.-+++
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~----~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH----VLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc----ccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 8999999999999999999999999999999999999999999865442 334667899999999999999999999
Q ss_pred HHHHHHHHhhc
Q 002159 603 DAGANLIRKSN 613 (958)
Q Consensus 603 eA~~~a~~r~~ 613 (958)
.|.|+-+++.+
T Consensus 345 DalmePvRkvq 355 (439)
T KOG0739|consen 345 DALMEPVRKVQ 355 (439)
T ss_pred hhhhhhHHHhh
Confidence 99999988754
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=2.6e-25 Score=255.13 Aligned_cols=241 Identities=21% Similarity=0.288 Sum_probs=190.9
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.+++.....+....+..|+.+|..| ++.++.+||||||||||||++|+++|++++.+++.+++.++...+.|+.+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~ 210 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGA 210 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchH
Confidence 345566655545555556788888755 56788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|+.+....|+||||||+|.++..+...+.. ...++...+.++...+ ++.....
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~-----~~~~~~~~l~~lL~~l----------------d~~~~~~ 269 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS-----GDREVQRTLMQLLAEM----------------DGFDPRG 269 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC-----ccHHHHHHHHHHHHhc----------------cccCCCC
Confidence 999999999999999999999999998754332211 1223444444443211 1122246
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
++.||+|||+++.+|++++| ||++.+.++.|+.++|.+|++.++++... ..+. .+..++..|.||+++|+..+
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~----~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDV----DLEELAELTEGASGADLKAI 344 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcC----CHHHHHHHcCCCCHHHHHHH
Confidence 89999999999999999987 89999999999999999999999876543 2233 36889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRN 660 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~ 660 (958)
|++|++.++++. ...++.+||.+|+...+...
T Consensus 345 ~~eA~~~a~~~~----------------------------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 345 CTEAGMFAIRDD----------------------------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhccc
Confidence 999999887641 23578999999999876543
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.93 E-value=2.7e-25 Score=258.92 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=156.3
Q ss_pred cccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 390 SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 390 ~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
..++++.+++||||||||||||++||++|++++.+++.+++..+.+++.|+++.+++++|+.|+..+|||+||||+|.+.
T Consensus 252 ~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 252 SNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAF 331 (489)
T ss_pred HhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEE
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHE 547 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~e 547 (958)
..+...+ + .+... +++..+.. .+.+ ...+|+||||||+++.+|++++| ||+..
T Consensus 332 ~~~~~~~---d-~~~~~---rvl~~lL~----------------~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 332 SNSESKG---D-SGTTN---RVLATFIT----------------WLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred ccccCCC---C-chHHH---HHHHHHHH----------------HHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeE
Confidence 6321111 1 11222 22222221 1111 15689999999999999999987 99999
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIR 610 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~ 610 (958)
+.++.|+.++|.+|++.++.+.... ...+..++.+++.|.||+++|+..+|.+|...+..
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCC---cccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999764321 11133478999999999999999999999877754
No 59
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=259.82 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=185.3
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+....+.+++.++.+|..+ +.+.|++|||+||||||||+|||++|++.+.+|+.+++++++.-+.|-....+|..|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 6778999999999999877 5688999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
+|++++|||+||||+|++...|... ..+...+.+..+++++ ..|++...+..|++||+|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-----~GggnderEQTLNQlL----------------vEmDGF~~~~gviviaaT 295 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-----LGGGNDEREQTLNQLL----------------VEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-----CCCCchHHHHHHHHHH----------------hhhccCCCCCceEEEecC
Confidence 9999999999999999998855211 1223456677777764 345555557899999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++-+|+++.| ||++++.++.||-++|.+|++.|+++... ..+++ +..+|+.|.||+++|+..++.+|+..+
T Consensus 296 NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vd----l~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVD----LKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCC----HHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 999999999998 89999999999999999999999977643 44554 577999999999999999999999988
Q ss_pred HHhh
Q 002159 609 IRKS 612 (958)
Q Consensus 609 ~~r~ 612 (958)
.++.
T Consensus 371 ar~n 374 (596)
T COG0465 371 ARRN 374 (596)
T ss_pred HHhc
Confidence 7753
No 60
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.93 E-value=5e-25 Score=253.10 Aligned_cols=237 Identities=18% Similarity=0.263 Sum_probs=186.4
Q ss_pred CCCcCCchHHHHHHHHH-HhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILASI-LAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~i-i~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
.+.+++... .+.+.+. ..|+.+|..+ ++.++.++|||||||||||+++|++|++++.+++.+.+.++.+.+.|+.
T Consensus 183 ~DIgGl~~q-i~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 183 ADIGGLEQQ-IQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG 261 (438)
T ss_pred HHhcCHHHH-HHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH
Confidence 344555543 4444444 4678887654 5788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++..|..|..+.|+|+||||+|.+..++.... .+...++...+.+++. .+++....
T Consensus 262 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-----sgg~~e~qr~ll~LL~----------------~Ldg~~~~ 320 (438)
T PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-----SGGEKEIQRTMLELLN----------------QLDGFDSR 320 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-----CcccHHHHHHHHHHHH----------------HHhhhccc
Confidence 99999999999999999999999999987543221 1122233333333322 11222235
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.++.||+|||+++.+|++++| ||+++|.++.||..+|.+|++.++.++.. ..++ +++.++..+.||+++|+..
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dv----dl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDV----DLEEFIMAKDELSGADIKA 395 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCc----CHHHHHHhcCCCCHHHHHH
Confidence 679999999999999999886 89999999999999999999999876643 3333 4688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
+|++|++.|+++. ...++.+||.+|++++.
T Consensus 396 i~~eA~~~Alr~~----------------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 396 ICTEAGLLALRER----------------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHHHHhc----------------------------CCccCHHHHHHHHHHHH
Confidence 9999999998742 24578899999998764
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=8.5e-24 Score=262.29 Aligned_cols=438 Identities=18% Similarity=0.250 Sum_probs=253.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----------CcEEEEecCcccc--cchhchHHHHHHHHHHhhc-CCCeEEeecc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG----------IHVVEYSCHNLMA--SSERKTSAALAQAFNTAQS-YSPTILLLRD 464 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg----------~~~~~I~~~~l~s--~~~g~~e~~l~~~f~~A~~-~~P~IL~iDe 464 (958)
.+++|+||||||||++++.+|..+. .+++.++...+.+ .+.|+.+..++++++++.. ..++|+||||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDE 288 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDE 288 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 4689999999999999999999872 4577777766663 5678899999999998864 4689999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~a 539 (958)
+|.+....+..+ ......+|...+ .++.+.+||||+.. -.++++
T Consensus 289 ih~l~~~g~~~~--------~~d~~n~Lkp~l-----------------------~~G~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 289 AHTLIGAGGQAG--------QGDAANLLKPAL-----------------------ARGELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred hHHhccCCCccc--------cccHHHHhhHHh-----------------------hCCCeEEEEecCHHHHhhhhhccHH
Confidence 999986332111 111223333332 27889999999864 358999
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCC-CcHHHHHHHhhhcCCCC-----hhhHHHHHHHHHH-HHHHhh
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-GSEEFVKDIIGQTSGFM-----PRDLHALVADAGA-NLIRKS 612 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~-~~~~~L~~la~~t~Gfv-----~~DL~~Lv~eA~~-~a~~r~ 612 (958)
++||| ..+.++.|+.+++..|++.+.......| ++ -.++.+..++..+++|+ +.---.|..+|+. ..+.+.
T Consensus 338 L~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~-~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~ 415 (852)
T TIGR03345 338 LTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHH-GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQN 415 (852)
T ss_pred HHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcC-CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhcc
Confidence 99999 5899999999999999887775433222 22 12455666777777654 3333334444332 222110
Q ss_pred ccc-------------------cccCC----CCc-c--hh-------hHHhhhcCcchhhhh------------------
Q 002159 613 NSE-------------------VDKNE----PGE-S--DL-------TAKVAHNDNSSIAAT------------------ 641 (958)
Q Consensus 613 ~~~-------------------~~~~~----~~~-~--~~-------~~~~~~~~~~~~~~~------------------ 641 (958)
... ...+. ... . .+ ..........+....
T Consensus 416 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (852)
T TIGR03345 416 ATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADAD 495 (852)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 000 00000 000 0 00 000000000000000
Q ss_pred -------------------------------ccccHHHHHHHHHhhcccccccCCCCCCCCccc----------------
Q 002159 642 -------------------------------QVMGKEDLVKAMERSKKRNASALGAPKVPNVKW---------------- 674 (958)
Q Consensus 642 -------------------------------~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~---------------- 674 (958)
..++.+++.+.+.+. ..+|..+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~----------tgip~~~~~~~e~~~l~~l~~~L~ 565 (852)
T TIGR03345 496 APADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADW----------TGIPVGRMVRDEIEAVLSLPDRLA 565 (852)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHH----------HCCCchhhchhHHHHHHHHHHHhc
Confidence 000011111100000 00010000
Q ss_pred cccccccccccccceeeeccccchhhhhcCCC---CCC-cEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLR---KRS-GVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM 747 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~---~~~-~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~ 747 (958)
+.+.|++...+.+.+.+.. ...|+. ++. .++|+||+|+|||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~-------~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 1133333333333322211 111222 233 38999999999999999999988 457889998876432
Q ss_pred ------------cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-------
Q 002159 748 ------------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN------- 808 (958)
Q Consensus 748 ------------~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~------- 808 (958)
|+|..+.. .+....+....+||+|||+|... ..+.+.|+..||.-.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-------------~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-------------PDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-------------HHHHHHHHHHhhcceeecCCCc
Confidence 55543322 24455567778999999998664 245666666665321
Q ss_pred -CCCCcEEEEEecCCCC-----------------------------CCChhhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 809 -DSSQDLFIIGASNRPD-----------------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 809 -~~~~~v~VI~aTNrp~-----------------------------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
-.-.+.+||+|||... .+.|+++. |++ +|.|. |.+.+....|++..
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~-pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYL-PLDDDVLAAIVRLK 779 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeC-CCCHHHHHHHHHHH
Confidence 1125688999998522 14466666 998 66666 47888888888766
Q ss_pred Hhhc--------cCCCCc---CHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 859 TRKF--------KLLEDV---SLYSIAKKCP-PNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 859 ~~~~--------~~~~d~---~l~~la~~~t-~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
+... .+.-.+ -++.|++.+. ..|-++.|..+++.-...++.+.+..
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~ 837 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 111112 2456777642 22446789999998888887776643
No 62
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-24 Score=257.18 Aligned_cols=237 Identities=19% Similarity=0.294 Sum_probs=188.0
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCcccC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVLS---LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~~---~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.+++..........+..|+.++..+. .+++.++|||||||||||++++++|++++.+|+.+.++++++++.|+++
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGese 321 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESE 321 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHH
Confidence 4455555433344445567778877653 5778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
.+++++|..|+..+|||+|+||+|++++.++...... ....+..++.++ ++.....
T Consensus 322 k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~----~~r~~~~lL~~~--------------------d~~e~~~ 377 (494)
T COG0464 322 KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS----GRRVVGQLLTEL--------------------DGIEKAE 377 (494)
T ss_pred HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH----HHHHHHHHHHHh--------------------cCCCccC
Confidence 9999999999999999999999999998653221100 011223333222 2223356
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+|+||||||+++.+|++++| ||+..+.++.||..+|.+|++.++...... ...+..+..+++.|.||+++|+..+
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCCCHHHHHHH
Confidence 79999999999999999999 999999999999999999999999754331 2234567889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
|++|.+.++++.. ...++++||.+|+...
T Consensus 455 ~~ea~~~~~~~~~---------------------------~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 455 VREAALEALREAR---------------------------RREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHHHHHhc---------------------------cCCccHHHHHHHHHhc
Confidence 9999999887531 3457889999999874
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.92 E-value=1.3e-23 Score=261.99 Aligned_cols=450 Identities=17% Similarity=0.253 Sum_probs=266.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
..+++|+||||||||++++.+|..+ +.+++.++...+. .++.|+.+..++.+++++....++||||||
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE 279 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE 279 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4468999999999999999999987 3678999988776 356788999999999999877899999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~a 539 (958)
+|.|.......+ . ..+..+|...+ .++.+.+||+|+..+ ..+++
T Consensus 280 ih~l~~~g~~~g-------~-~~~a~lLkp~l-----------------------~rg~l~~IgaTt~~ey~~~ie~D~a 328 (821)
T CHL00095 280 VHTLIGAGAAEG-------A-IDAANILKPAL-----------------------ARGELQCIGATTLDEYRKHIEKDPA 328 (821)
T ss_pred HHHHhcCCCCCC-------c-ccHHHHhHHHH-----------------------hCCCcEEEEeCCHHHHHHHHhcCHH
Confidence 999986332111 0 12333443332 278899999998653 56899
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCCh-----hhHHHHHHHHHHHH-HHhhc
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMP-----RDLHALVADAGANL-IRKSN 613 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~-----~DL~~Lv~eA~~~a-~~r~~ 613 (958)
+.+|| ..+.+..|+..+..+|++.+.......+.-.-.++.+..++..+++|.+ .---.|..+|+... +....
T Consensus 329 L~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~ 407 (821)
T CHL00095 329 LERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSR 407 (821)
T ss_pred HHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccC
Confidence 99999 4688999999999999987654322211111234456666666666554 32333444443322 21100
Q ss_pred cccccCCCCcchhhHHhh----------hcCc-----------------------c------hhhhhccccHHHHHHHHH
Q 002159 614 SEVDKNEPGESDLTAKVA----------HNDN-----------------------S------SIAATQVMGKEDLVKAME 654 (958)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~----------~~~~-----------------------~------~~~~~~~~~~ed~~~al~ 654 (958)
. ......+..++. .... . .......++.+|+.+.+.
T Consensus 408 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 482 (821)
T CHL00095 408 --L---PPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVS 482 (821)
T ss_pred --C---chhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHH
Confidence 0 000000000000 0000 0 000012244444444443
Q ss_pred hhcccccccCCCCCC------CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHH
Q 002159 655 RSKKRNASALGAPKV------PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAV 728 (958)
Q Consensus 655 ~~~~~~~s~l~~~~~------p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakai 728 (958)
.........+...+. ...--+.+.|.+.+.+.+...+..... -+...-+|...++|+||+|+|||+||+++
T Consensus 483 ~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 483 AWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV---GLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh---cccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 321110000000000 000012355566555555444321100 00001122234899999999999999999
Q ss_pred HHHc---CCceeeeccchhhh-----c-------cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchH
Q 002159 729 ATEC---SLNFLSVKGPELIN-----M-------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVM 793 (958)
Q Consensus 729 A~~~---~~~~i~v~~~~l~~-----~-------~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~ 793 (958)
|..+ ..+++.++++++.. + |+|..+ ...+....+....+|++|||+|++.
T Consensus 560 A~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~------------- 624 (821)
T CHL00095 560 ASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH------------- 624 (821)
T ss_pred HHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC-------------
Confidence 9987 46788888877632 2 334322 2345566666666999999999875
Q ss_pred HHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCCC-------------------------------------CCh
Q 002159 794 DRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPDL-------------------------------------IDP 828 (958)
Q Consensus 794 ~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~~-------------------------------------ldp 828 (958)
..+.+.|+..||.-. -..++.++|+|||.... +.|
T Consensus 625 ~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 704 (821)
T CHL00095 625 PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRP 704 (821)
T ss_pred HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCH
Confidence 346777777777321 11357889999986421 124
Q ss_pred hhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc---------cCCCC-cCHHHHHhhC-CCCCCHHHHHHHHHHHHHHH
Q 002159 829 ALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF---------KLLED-VSLYSIAKKC-PPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 829 aLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~---------~~~~d-~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A 897 (958)
.++. |+|.+|.|. |-+.+....|++..++.. .+.-+ .-.+.|++.+ ...|-++.|+.+++.-...+
T Consensus 705 efln--Rid~ii~F~-pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~ 781 (821)
T CHL00095 705 EFLN--RLDEIIVFR-QLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDP 781 (821)
T ss_pred HHhc--cCCeEEEeC-CCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 5565 999988888 478888889887766532 11111 1145666652 22444678999988887777
Q ss_pred HHHHhcc
Q 002159 898 AKRKVLS 904 (958)
Q Consensus 898 ~~r~~~~ 904 (958)
+.+.+..
T Consensus 782 l~~~~l~ 788 (821)
T CHL00095 782 LAEEVLS 788 (821)
T ss_pred HHHHHHh
Confidence 7776654
No 64
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.91 E-value=9.8e-23 Score=254.71 Aligned_cols=440 Identities=19% Similarity=0.280 Sum_probs=257.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhc-CCCeEEeecc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQS-YSPTILLLRD 464 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~-~~P~IL~iDe 464 (958)
.+++|+||||+|||++++.+|..+ +.+++.++...++ ..+.|+.+..++.+|..+.. ..++||||||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE 274 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE 274 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 458999999999999999999986 5678888777665 35678888999999998864 3689999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~a 539 (958)
+|.|....+..+ ......+|..++ .++.+.+||+|+.. ..+|++
T Consensus 275 ih~l~~~g~~~~--------~~d~~~~Lk~~l-----------------------~~g~i~~IgaTt~~e~r~~~~~d~a 323 (852)
T TIGR03346 275 LHTLVGAGKAEG--------AMDAGNMLKPAL-----------------------ARGELHCIGATTLDEYRKYIEKDAA 323 (852)
T ss_pred HHHhhcCCCCcc--------hhHHHHHhchhh-----------------------hcCceEEEEeCcHHHHHHHhhcCHH
Confidence 999975321111 112233332221 26789999999866 357999
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCC-CcHHHHHHHhhhcCCCCh-----hhHHHHHHHHHHHH-HHhh
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-GSEEFVKDIIGQTSGFMP-----RDLHALVADAGANL-IRKS 612 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~-~~~~~L~~la~~t~Gfv~-----~DL~~Lv~eA~~~a-~~r~ 612 (958)
+.|||. .+.++.|+.+++..|++.+.+....-| ++ -.+..+...+..+++|+. .---.|..+|+... +...
T Consensus 324 l~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~-~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~ 401 (852)
T TIGR03346 324 LERRFQ-PVFVDEPTVEDTISILRGLKERYEVHH-GVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEID 401 (852)
T ss_pred HHhcCC-EEEeCCCCHHHHHHHHHHHHHHhcccc-CCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhcc
Confidence 999994 689999999999999998876654422 22 234455666666666543 33333444443322 1100
Q ss_pred c-------------------cccccCCCC-----cchhhHH---hhhc----Ccchhhhh--------------------
Q 002159 613 N-------------------SEVDKNEPG-----ESDLTAK---VAHN----DNSSIAAT-------------------- 641 (958)
Q Consensus 613 ~-------------------~~~~~~~~~-----~~~~~~~---~~~~----~~~~~~~~-------------------- 641 (958)
. ......... ...+... .... ...+....
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (852)
T TIGR03346 402 SKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLEL 481 (852)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000 0000000 0000 00000000
Q ss_pred --------------------------------------------ccccHHHHHHHHHhhcccccccCCCCCCCCcc----
Q 002159 642 --------------------------------------------QVMGKEDLVKAMERSKKRNASALGAPKVPNVK---- 673 (958)
Q Consensus 642 --------------------------------------------~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~---- 673 (958)
..++.+++...+... .+ +|...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~-------tg---ip~~~~~~~ 551 (852)
T TIGR03346 482 EQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRW-------TG---IPVSKMLEG 551 (852)
T ss_pred HHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHh-------cC---CCcccccHH
Confidence 001111111111100 00 11100
Q ss_pred ------------ccccccccccccccceeeeccccchhhhhcCC----CCCCcEEEecCCCChhHHHHHHHHHHc---CC
Q 002159 674 ------------WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGL----RKRSGVLLYGPPGTGKTLLAKAVATEC---SL 734 (958)
Q Consensus 674 ------------~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i----~~~~~iLL~GppGtGKTtLakaiA~~~---~~ 734 (958)
...+.|.+...+.+.+.+.. ...|+ +|...++|+||+|||||++|++||..+ +.
T Consensus 552 e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~-------~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~ 624 (852)
T TIGR03346 552 EREKLLHMEEVLHERVVGQDEAVEAVSDAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED 624 (852)
T ss_pred HHHHHHHHHHHhhcccCCChHHHHHHHHHHHH-------HhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC
Confidence 12233434333333332210 11122 233458999999999999999999977 46
Q ss_pred ceeeeccchhhh-----c-------cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 735 NFLSVKGPELIN-----M-------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 735 ~~i~v~~~~l~~-----~-------~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
+++.++++++.. . |+|..+ ...+....+....+||||||++.+. ..+.+.|+.
T Consensus 625 ~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~-------------~~v~~~Ll~ 689 (852)
T TIGR03346 625 AMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH-------------PDVFNVLLQ 689 (852)
T ss_pred cEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC-------------HHHHHHHHH
Confidence 788888876533 2 233222 1234444555566899999999775 346677777
Q ss_pred hhcCCC--------CCCCcEEEEEecCCCCC-------------------------CChhhcCcCCccceeeccCCCCHH
Q 002159 803 EIDGLN--------DSSQDLFIIGASNRPDL-------------------------IDPALLRPGRFDKLLYVGVNSDVS 849 (958)
Q Consensus 803 ~ldg~~--------~~~~~v~VI~aTNrp~~-------------------------ldpaLlrpgRfd~~I~v~~ppd~~ 849 (958)
.|+.-. ..-++.+||+|||.... +.|.|+. |+|.++.+. |++.+
T Consensus 690 ~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~-PL~~e 766 (852)
T TIGR03346 690 VLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFH-PLGRE 766 (852)
T ss_pred HHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecC-CcCHH
Confidence 775321 11256889999998321 3356665 999988888 48889
Q ss_pred HHHHHHHHHHhhc-------cCCCCcC---HHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 850 YRERVLKALTRKF-------KLLEDVS---LYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 850 ~r~~Il~~~~~~~-------~~~~d~~---l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
....|+...+... .+...++ ++.|+++. ...|..+.|++++++.....+.+.+...
T Consensus 767 ~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~ 833 (852)
T TIGR03346 767 QIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAG 833 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 9999987766421 1111222 45666652 1245678999999999988888776543
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=1.4e-22 Score=252.29 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=117.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhh-cCCCeEEeecc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQ-SYSPTILLLRD 464 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~-~~~P~IL~iDe 464 (958)
.+++|+||||||||++++.+|..+ +.+++.++...+. .++.|+.+..++.+|+... ...++|+||||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDE 279 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 279 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEec
Confidence 458999999999999999999988 6788888887766 3466888999999998754 35689999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~a 539 (958)
+|.|.......+ . .....+|...+ .++.+.+||||+..+ .+|++
T Consensus 280 ih~l~~~~~~~~-------~-~d~~~~lkp~l-----------------------~~g~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 280 LHTMVGAGKADG-------A-MDAGNMLKPAL-----------------------ARGELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred HHHhccCCCCcc-------c-hhHHHHhcchh-----------------------hcCCCeEEEcCCCHHHHHHhhhcHH
Confidence 999986332111 1 12233332221 278899999998765 48999
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC-cHHHHHHHhhhcCCCC
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG-SEEFVKDIIGQTSGFM 593 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~-~~~~L~~la~~t~Gfv 593 (958)
++|||. .+.++.|+.+++..|++.+.++...-| ++. .+..+...+..+++|.
T Consensus 329 l~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~-~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 329 LERRFQ-KVFVAEPSVEDTIAILRGLKERYELHH-HVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred HHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCC-CCCcCHHHHHHHHHHhhccc
Confidence 999996 688999999999999998876544322 222 2333444444555544
No 66
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.91 E-value=8.2e-24 Score=264.36 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=147.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------------------------
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASS----------------------------------- 437 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~----------------------------------- 437 (958)
+..+++||||+||||||||.|||++|++.+++++.|++++++..+
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 467889999999999999999999999999999999999888543
Q ss_pred ------hhchH--HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCC
Q 002159 438 ------ERKTS--AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHG 509 (958)
Q Consensus 438 ------~g~~e--~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g 509 (958)
.+..+ ..++.+|+.|+..+||||||||||+++... .... .+..++..+...
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~l--tL~qLLneLDg~----------- 1764 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYL--SLGLLVNSLSRD----------- 1764 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------ccee--hHHHHHHHhccc-----------
Confidence 11122 348899999999999999999999998621 1101 123333333110
Q ss_pred CCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhh
Q 002159 510 YFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIG 587 (958)
Q Consensus 510 ~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~ 587 (958)
.+.....+|+||||||+|+.||||++| ||++.|.++.|+..+|.+++..++.... ++.+.. ...+..+|.
T Consensus 1765 ------~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg-~~L~~~-~vdl~~LA~ 1836 (2281)
T CHL00206 1765 ------CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG-FHLEKK-MFHTNGFGS 1836 (2281)
T ss_pred ------cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcC-CCCCcc-cccHHHHHH
Confidence 001125679999999999999999998 9999999999999999999987642211 122211 124788999
Q ss_pred hcCCCChhhHHHHHHHHHHHHHHhh
Q 002159 588 QTSGFMPRDLHALVADAGANLIRKS 612 (958)
Q Consensus 588 ~t~Gfv~~DL~~Lv~eA~~~a~~r~ 612 (958)
.|.||+|+|++.||.+|+..++++.
T Consensus 1837 ~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1837 ITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998763
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=2.9e-23 Score=246.00 Aligned_cols=229 Identities=21% Similarity=0.266 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+..+.+.+++..+.++..+ +.+++.++||+||||||||++++++|++++.+++.+++.++...+.+..+..++..|+
T Consensus 62 ~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~ 141 (495)
T TIGR01241 62 EAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 141 (495)
T ss_pred HHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHH
Confidence 4556677777776666544 4677889999999999999999999999999999999999988888899999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.|...+|+||||||+|.+...+.... .....+....+.+++.. +++.....+++|||||
T Consensus 142 ~a~~~~p~Il~iDEid~l~~~r~~~~-----~~~~~~~~~~~~~lL~~----------------~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 142 QAKKNAPCIIFIDEIDAVGRQRGAGL-----GGGNDEREQTLNQLLVE----------------MDGFGTNTGVIVIAAT 200 (495)
T ss_pred HHHhcCCCEEEEechhhhhhccccCc-----CCccHHHHHHHHHHHhh----------------hccccCCCCeEEEEec
Confidence 99999999999999999987542210 01112223333343321 2222235679999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++.+|++++| ||++.+.++.|+.++|.+|++.++++... . .+..+..++..+.||+++|+..++++|+..+
T Consensus 201 n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~----~~~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 201 NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A----PDVDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C----cchhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 89999999999999999999999876432 1 2345789999999999999999999998776
Q ss_pred HHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 609 IRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 609 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
.++. ...++.+++..|+...
T Consensus 276 ~~~~----------------------------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 276 ARKN----------------------------KTEITMNDIEEAIDRV 295 (495)
T ss_pred HHcC----------------------------CCCCCHHHHHHHHHHH
Confidence 5431 2346778888888765
No 68
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.90 E-value=4.6e-23 Score=235.31 Aligned_cols=237 Identities=21% Similarity=0.282 Sum_probs=182.6
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
.+.+++.....+....+..|..+|..+ +..++.++||+||||||||++++++|++++.+++.+.+.++...+.++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHH
Confidence 345556554444444455777887655 46778999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++..|+.+....|+++||||+|.+...+...... ...++...+.++... +++.....
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~-----~~~~~~~~l~~ll~~----------------ld~~~~~~ 260 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS-----GDREVQRTLMQLLAE----------------LDGFDPRG 260 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC-----ccHHHHHHHHHHHHH----------------hhCCCCCC
Confidence 999999999998999999999999998644222111 122233333333211 11111246
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
++.||+|||+++.+|+++++ ||++.+.++.|+..+|.+|++.++.+... ..+. .+..++..+.||+++|+..+
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~----~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDV----DLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccC----CHHHHHHHcCCCCHHHHHHH
Confidence 89999999999999999987 89999999999999999999999866542 2233 36889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
|++|++.++++. ...++.+||.+|+..+
T Consensus 336 ~~~A~~~a~~~~----------------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 336 CTEAGMFAIREE----------------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHhC----------------------------CCccCHHHHHHHHHHh
Confidence 999999997642 2357888999888753
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.90 E-value=9.3e-23 Score=244.65 Aligned_cols=235 Identities=18% Similarity=0.253 Sum_probs=184.6
Q ss_pred CCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+..+.+ +..+.+.+++.++.++..+ +...+.+|||+||||||||+++|++|++.+.+++.++|+++...+.+....
T Consensus 184 dv~G~~-~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 184 DIAGIE-EAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred hccChH-HHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 344443 4567788888777777664 457788999999999999999999999999999999999988877788888
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++..|+.|..+.|||+||||+|.+...+.... .+...+....+.+++.. +++...+.+
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-----~~~~~e~~~~L~~LL~~----------------~dg~~~~~~ 321 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGI-----GGGNDEREQTLNQLLTE----------------MDGFKGNKG 321 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCC-----CCCcHHHHHHHHHHHhh----------------hccccCCCC
Confidence 999999999999999999999999987542211 11122334444444322 122223568
Q ss_pred EEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
++|||+||+++.+|++++| ||++.+.++.|+.++|.+|++.++++... ..+..+..+|..|.||+++|+..++
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999987 89999999999999999999999976332 2345678999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 602 ~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
.+|+..+.++. ...++.+++.+|+.+.
T Consensus 397 neAal~a~r~~----------------------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 397 NEAAILTARRK----------------------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHhC----------------------------CCCcCHHHHHHHHHHH
Confidence 99987765431 2346778888888765
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.4e-23 Score=229.81 Aligned_cols=253 Identities=19% Similarity=0.287 Sum_probs=189.8
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
++++.++.....-..+..+.|.+.|..|. -.+.+++||.||||+|||+|+++||.+.++.|+.|+.++|.++|.|+++
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~e 231 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESE 231 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHH
Confidence 45566655433344445578899888873 3556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|.-|+..+|+|+||||+|.+..+++... +........+ .+-++.... .....
T Consensus 232 K~vralf~vAr~~qPsvifidEidslls~Rs~~e-~e~srr~kte---fLiq~~~~~------------------s~~~d 289 (428)
T KOG0740|consen 232 KLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE-HESSRRLKTE---FLLQFDGKN------------------SAPDD 289 (428)
T ss_pred HHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc-cccchhhhhH---HHhhhcccc------------------CCCCC
Confidence 9999999999999999999999999988763221 1111111111 111221100 11245
Q ss_pred cEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
+|+||||||.|+.+|.+++|||...+.++.||.+.|..+++.++.+.. +...+..++.+++.|.||++.|+.+||+
T Consensus 290 rvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~----~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP----NGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred eEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC----CCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 899999999999999999999999999999999999999999997652 2233566899999999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 603 DAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 603 eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
+|++.-.+........ ... .......+...||..++...++
T Consensus 366 ea~~~p~r~~~~~~~~------~~~---------~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 366 EAAMGPLRELGGTTDL------EFI---------DADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred HhhcCchhhcccchhh------hhc---------chhccCCCCcchHHHHHHhhcc
Confidence 9988766543221000 000 0012456777888888887654
No 71
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-23 Score=217.11 Aligned_cols=211 Identities=21% Similarity=0.319 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
.+..-+..++.|+.+|..| ++++|.+++||||||+|||.+++++|..+|++++.+..+.+.+++.|++...+++.|.
T Consensus 140 qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~ 219 (388)
T KOG0651|consen 140 QIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFR 219 (388)
T ss_pred HHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHH
Confidence 3444445556888888877 5799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.|+...|||+|+||||+++..+..++..++ .++...|-++..| +++....++|-+|+||
T Consensus 220 yA~~~~pciifmdeiDAigGRr~se~Ts~d-----reiqrTLMeLlnq----------------mdgfd~l~rVk~Imat 278 (388)
T KOG0651|consen 220 YAREVIPCIIFMDEIDAIGGRRFSEGTSSD-----REIQRTLMELLNQ----------------MDGFDTLHRVKTIMAT 278 (388)
T ss_pred HHhhhCceEEeehhhhhhccEEeccccchh-----HHHHHHHHHHHHh----------------hccchhcccccEEEec
Confidence 999999999999999999886644443332 3455555454332 3444557899999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++.|+|+|.| |.++.+.+|.|++..|..|++.+.+..+. +-..+ .+.+.+..+||.++|+...|++|.+-+
T Consensus 279 NrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid----~eaivK~~d~f~gad~rn~~tEag~Fa 353 (388)
T KOG0651|consen 279 NRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEID----DEAILKLVDGFNGADLRNVCTEAGMFA 353 (388)
T ss_pred CCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-ccccc----HHHHHHHHhccChHHHhhhcccccccc
Confidence 999999999998 89999999999999999999998876543 22222 477888899999999999999998766
Q ss_pred HH
Q 002159 609 IR 610 (958)
Q Consensus 609 ~~ 610 (958)
++
T Consensus 354 ~~ 355 (388)
T KOG0651|consen 354 IP 355 (388)
T ss_pred cc
Confidence 54
No 72
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=2.5e-22 Score=220.07 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=149.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhc-----CCCeEEeecchh
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQS-----YSPTILLLRDFD 466 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~-----~~P~IL~iDeid 466 (958)
.+++++.+++||||||||||++++++|+++|.+++.+++.+|.+++.|+++..+++.|..|.. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 346889999999999999999999999999999999999999999999999999999999975 369999999999
Q ss_pred hhhhcccCCCCCCccccchHHH--HHHHHHhcCCCCCccccccCC-CCchhhhhhhhcCcEEEEEecCCCCCCChhhhc-
Q 002159 467 VFRNLVSNESLPNDQVGLSSEV--ASVIREFTEPSAEDEDEESHG-YFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR- 542 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v--~~~L~~l~~~l~~~~~~~~~g-~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr- 542 (958)
++++.+.. .+.....++ ..+|..+ +... ....+| |. ......+|+||+|||+++.||++++|
T Consensus 223 A~~g~r~~-----~~~tv~~qiV~~tLLnl~-D~p~---~v~l~G~w~-----~~~~~~~V~VIaTTNrpd~LDpALlRp 288 (413)
T PLN00020 223 AGAGRFGT-----TQYTVNNQMVNGTLMNIA-DNPT---NVSLGGDWR-----EKEEIPRVPIIVTGNDFSTLYAPLIRD 288 (413)
T ss_pred hcCCCCCC-----CCcchHHHHHHHHHHHHh-cCCc---ccccccccc-----ccccCCCceEEEeCCCcccCCHhHcCC
Confidence 99985531 111122222 2233222 1100 000111 10 01235689999999999999999999
Q ss_pred -cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHHHh
Q 002159 543 -CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG----FMPRDLHALVADAGANLIRK 611 (958)
Q Consensus 543 -rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G----fv~~DL~~Lv~eA~~~a~~r 611 (958)
||+..+ ..|+.++|.+|++.+++.... + ...+.+++..+.| |.++-+..+..++....+.+
T Consensus 289 GRfDk~i--~lPd~e~R~eIL~~~~r~~~l-----~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 289 GRMEKFY--WAPTREDRIGVVHGIFRDDGV-----S-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred CCCCcee--CCCCHHHHHHHHHHHhccCCC-----C-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 999875 589999999999999976432 2 4567889988888 77777777777666555443
No 73
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.89 E-value=4.4e-22 Score=231.61 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=160.3
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEecCc
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH----------VVEYSCHN 432 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~----------~~~I~~~~ 432 (958)
++.++++..+.+....++.|+++|..+ +++++.++|||||||||||+++|++|++++.+ ++.+.+++
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 556677776666666778899999766 46888999999999999999999999998654 55677788
Q ss_pred ccccchhchHHHHHHHHHHhhcC----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccC
Q 002159 433 LMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (958)
Q Consensus 433 l~s~~~g~~e~~l~~~f~~A~~~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~ 508 (958)
+.+++.++++..++.+|+.+... .|+|+||||+|.++..+..... . .... .++.+++..
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~---d~e~---~il~~LL~~---------- 324 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-S---DVET---TVVPQLLSE---------- 324 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-c---hHHH---HHHHHHHHH----------
Confidence 89999999999999999988753 6999999999999875422111 1 1111 122233211
Q ss_pred CCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHh
Q 002159 509 GYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDII 586 (958)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la 586 (958)
+++.....+++||+|||+++.||++++| ||+..|.++.|+.++|.+|++.++..... . ..-+
T Consensus 325 ------LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~----l------~~~l 388 (512)
T TIGR03689 325 ------LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP----L------DADL 388 (512)
T ss_pred ------hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC----c------hHHH
Confidence 1222235689999999999999999998 99999999999999999999999854211 1 1123
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHH
Q 002159 587 GQTSGFMPRDLHALVADAGANLIR 610 (958)
Q Consensus 587 ~~t~Gfv~~DL~~Lv~eA~~~a~~ 610 (958)
..+.|+.++|+..+++++....+.
T Consensus 389 ~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 389 AEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh
Confidence 446889999999999887655553
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.87 E-value=1.8e-21 Score=236.22 Aligned_cols=212 Identities=19% Similarity=0.248 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
...+.+.+++.....+..+ +...+.+|+|+||||||||++++++|++++.+++.+++.++...+.+.....++..|.
T Consensus 159 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~ 238 (644)
T PRK10733 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 238 (644)
T ss_pred HHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHH
Confidence 3445666666555444433 3466788999999999999999999999999999999999888888888999999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.+....|||+||||+|.++..+.... .+...+....+.+++. .+++......++|||||
T Consensus 239 ~a~~~~P~IifIDEiD~l~~~r~~~~-----~g~~~~~~~~ln~lL~----------------~mdg~~~~~~vivIaaT 297 (644)
T PRK10733 239 QAKKAAPCIIFIDEIDAVGRQRGAGL-----GGGHDEREQTLNQMLV----------------EMDGFEGNEGIIVIAAT 297 (644)
T ss_pred HHHhcCCcEEEehhHhhhhhccCCCC-----CCCchHHHHHHHHHHH----------------hhhcccCCCCeeEEEec
Confidence 99999999999999999987543211 1111223334444432 12223336689999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++.+|++++| ||++.+.++.||.++|.+|++.++++.+. ..+. .+..+++.|.||+++|+..||++|+..+
T Consensus 298 N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-~~~~----d~~~la~~t~G~sgadl~~l~~eAa~~a 372 (644)
T PRK10733 298 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDI----DAAIIARGTPGFSGADLANLVNEAALFA 372 (644)
T ss_pred CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-CCcC----CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 99999999999999999999999977543 3343 3577999999999999999999999887
Q ss_pred HHh
Q 002159 609 IRK 611 (958)
Q Consensus 609 ~~r 611 (958)
.++
T Consensus 373 ~r~ 375 (644)
T PRK10733 373 ARG 375 (644)
T ss_pred HHc
Confidence 653
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.5e-20 Score=221.22 Aligned_cols=448 Identities=17% Similarity=0.253 Sum_probs=272.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--cchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s--~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
+-+|+|+||+|||.++..+|... +..++.++...+.+ +|-|+.+..++.+..+.....+.|+||||+|
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 46899999999999999999876 44677777766664 6779999999999999998789999999999
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhh
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIR 541 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alr 541 (958)
.+......++. .-....+|+-.+ .++.+-+||||+.-+ .-|++|-
T Consensus 273 tiVGAG~~~G~-------a~DAaNiLKPaL-----------------------ARGeL~~IGATT~~EYRk~iEKD~AL~ 322 (786)
T COG0542 273 TIVGAGATEGG-------AMDAANLLKPAL-----------------------ARGELRCIGATTLDEYRKYIEKDAALE 322 (786)
T ss_pred hhcCCCccccc-------ccchhhhhHHHH-----------------------hcCCeEEEEeccHHHHHHHhhhchHHH
Confidence 99763322210 112233333332 278889999996432 3478999
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC-----ChhhHHHHHHHHHHHHHHhhcccc
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF-----MPRDLHALVADAGANLIRKSNSEV 616 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf-----v~~DL~~Lv~eA~~~a~~r~~~~~ 616 (958)
||| +.+.+..|+.++-..|++-+-.+....|.=.-.+..+..-+..++.| .+.---.|+.+|+.......
T Consensus 323 RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~---- 397 (786)
T COG0542 323 RRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEI---- 397 (786)
T ss_pred hcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcc----
Confidence 999 78999999999999999998766554332122234444444444443 33333344444443321110
Q ss_pred ccCCCCcchhhHHhhhc---------Cc----------------------chhhhhccccHHHHHHHHHhhcccccccCC
Q 002159 617 DKNEPGESDLTAKVAHN---------DN----------------------SSIAATQVMGKEDLVKAMERSKKRNASALG 665 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~---------~~----------------------~~~~~~~~~~~ed~~~al~~~~~~~~s~l~ 665 (958)
. .-.....+..++.+- .. ...... .++.+++.+.+..........+.
T Consensus 398 ~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~ 475 (786)
T COG0542 398 D-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVAKLL 475 (786)
T ss_pred c-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHHHHHHCCChhhhc
Confidence 0 000001111000000 00 000000 13334444443322111100000
Q ss_pred CCC------CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC---Cce
Q 002159 666 APK------VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS---LNF 736 (958)
Q Consensus 666 ~~~------~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~---~~~ 736 (958)
..+ ....--..+.|++.....+.+++..... -+...-+|-...+|.||+|+|||-|||++|..+. .++
T Consensus 476 ~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~al 552 (786)
T COG0542 476 EDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQAL 552 (786)
T ss_pred hhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccc
Confidence 000 0000012255666655555444421100 0011223334688999999999999999999996 789
Q ss_pred eeeccchhhhc------------cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhh
Q 002159 737 LSVKGPELINM------------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEI 804 (958)
Q Consensus 737 i~v~~~~l~~~------------~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~l 804 (958)
+.++++|+..+ |+|..+. ..+-+..|....|||+||||++.. ..+++-||.-|
T Consensus 553 iR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH-------------pdV~nilLQVl 617 (786)
T COG0542 553 IRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH-------------PDVFNLLLQVL 617 (786)
T ss_pred eeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC-------------HHHHHHHHHHh
Confidence 99999998764 7776553 345566677778999999998775 35888999888
Q ss_pred cCCC--C------CCCcEEEEEecCCCC----------------------------CCChhhcCcCCccceeeccCCCCH
Q 002159 805 DGLN--D------SSQDLFIIGASNRPD----------------------------LIDPALLRPGRFDKLLYVGVNSDV 848 (958)
Q Consensus 805 dg~~--~------~~~~v~VI~aTNrp~----------------------------~ldpaLlrpgRfd~~I~v~~ppd~ 848 (958)
|.-. . .-++.+||+|||--. ...|+++. |+|.+|.|.. -+.
T Consensus 618 DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~-L~~ 694 (786)
T COG0542 618 DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNP-LSK 694 (786)
T ss_pred cCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccC-CCH
Confidence 7421 1 224789999998431 12356666 9998888884 788
Q ss_pred HHHHHHHHHHHhhcc-------CCCCc---CHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 849 SYRERVLKALTRKFK-------LLEDV---SLYSIAKKCP-PNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 849 ~~r~~Il~~~~~~~~-------~~~d~---~l~~la~~~t-~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
+...+|....+.... +.-.+ -.+.|++++. ..|-++-|+.+++.-....+.+.+..
T Consensus 695 ~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 695 EVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 888999877764331 11111 1456777652 34556788888888777777776654
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.4e-21 Score=189.41 Aligned_cols=131 Identities=43% Similarity=0.789 Sum_probs=119.4
Q ss_pred EEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcC-CcEEEEcccccccCCCCCCCCC
Q 002159 711 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR-PCVIFFDELDSLAPARGASGDS 789 (958)
Q Consensus 711 iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~-P~ILfiDEiD~l~~~r~~~~~~ 789 (958)
|+|+||||||||++++++|..++.+++.++++++.+.+.+++++.++.+|++++... |+||||||+|.+.+.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999999999999999999999999888 9999999999999877 2234
Q ss_pred cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccC
Q 002159 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 790 ~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ 844 (958)
.....+++++|+..++.......+++||+|||+++.++|+++| |||++.|++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5567899999999999987655679999999999999999998 89999999974
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=1.5e-19 Score=198.87 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=162.4
Q ss_pred ccccccccccccccceeeeccccchhhhh-cCCC---CCCcEEEecCCCChhHHHHHHHHHHcC-------Cceeeeccc
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLR---KRSGVLLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP 742 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~---~~~~iLL~GppGtGKTtLakaiA~~~~-------~~~i~v~~~ 742 (958)
+++++|++.+|+++.+.+.+.. .+.... .|+. ++.+++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3579999999999988876633 333332 3543 344699999999999999999998762 358999999
Q ss_pred hhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 743 ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
++.+.|+|+++..++.+|++|. ++||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ---RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCc
Confidence 9999999999888888888864 469999999999754321 234567889999999854 356888888764
Q ss_pred CC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc--CCCCcCHHHHH----hhC-CCCCC-HHHHHHH
Q 002159 823 PD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK--LLEDVSLYSIA----KKC-PPNFT-GADMYAL 889 (958)
Q Consensus 823 p~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~--~~~d~~l~~la----~~~-t~g~s-GaDi~~l 889 (958)
.. .++|+|.+ ||+..|+|+. ++.+++..|++.++++.. ++++. ...++ +.. ...|. |++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~-~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ 246 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPD-YTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNA 246 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCC-cCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 32 34699999 9999999995 889999999999987653 33322 22222 221 24566 8999999
Q ss_pred HHHHHHHHHHHHhcc
Q 002159 890 CADAWFHAAKRKVLS 904 (958)
Q Consensus 890 ~~~A~~~A~~r~~~~ 904 (958)
+..|...-..|....
T Consensus 247 ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 247 LDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999998888887643
No 78
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=2e-20 Score=219.59 Aligned_cols=190 Identities=22% Similarity=0.219 Sum_probs=119.7
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc--cccchhch--
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNL--MASSERKT-- 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l--~s~~~g~~-- 441 (958)
+....++. +.|++.++..+.++.+ |.|+|+||+|||||+|++++++.+..++|....- ++....+.
T Consensus 8 ~ls~~~g~---~~l~~~~~l~~~~G~r-------iGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~ 77 (530)
T COG0488 8 NLSLAYGD---RPLLENVSLTLNPGER-------IGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPL 77 (530)
T ss_pred eeEEeeCC---ceeecCCcceeCCCCE-------EEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCc
Confidence 44445555 6777777777777776 9999999999999999999999887777765531 11111111
Q ss_pred --H-HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhh
Q 002159 442 --S-AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518 (958)
Q Consensus 442 --e-~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~ 518 (958)
. ..+..++..... .--++.+.+.+.... ... ......++...+ +..++|.++.+...
T Consensus 78 ~~~~tv~~~v~~~~~~---~~~~~~~~~~~~~~~---~~~--~~~~~~~l~~~~------------~~~~~~~~e~~~~~ 137 (530)
T COG0488 78 DPEKTVLDYVIEGFGE---LRELLAELEEAYALL---ADP--DDELLAELEALL------------EELDGWTLEARAEE 137 (530)
T ss_pred CCCccHHHHHHhhhHH---HHHHHHHHHHHHHhc---ccc--hhHHHHHHHHHH------------HhhcccchHHHHHH
Confidence 0 111111111100 000111222221100 000 000111222222 23456777777777
Q ss_pred hhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC
Q 002159 519 ICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 519 ~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G 591 (958)
.. ...++++. .+...++|+| |+.|+.|++.++.+++.| |+|.+...||+.++..+.|
T Consensus 138 ~L-----------~gLg~~~~--~~~~~~LSGG---~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 138 AL-----------LGLGFPDE--DRPVSSLSGG---WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG 201 (530)
T ss_pred HH-----------hcCCCCcc--cCchhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 66 55666655 5566889999 999999999999999887 6777789999999999999
Q ss_pred ---CChhhHHHHH
Q 002159 592 ---FMPRDLHALV 601 (958)
Q Consensus 592 ---fv~~DL~~Lv 601 (958)
+++||+.+|.
T Consensus 202 tviiVSHDR~FLd 214 (530)
T COG0488 202 TVIVVSHDRYFLD 214 (530)
T ss_pred cEEEEeCCHHHHH
Confidence 8999999998
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=2e-19 Score=196.14 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=159.7
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCC---CCCcEEEecCCCChhHHHHHHHHHHc-------CCceeeeccch
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLR---KRSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGPE 743 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~---~~~~iLL~GppGtGKTtLakaiA~~~-------~~~~i~v~~~~ 743 (958)
.++++|++.+|+.+.+.+.++.........|+. ...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 457899999999999888776554433334554 34568999999999999999999875 24788899999
Q ss_pred hhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 744 LINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
+.+.|+|+++..++++|+.|. ++||||||+|.+.... ........++.|+..|+.. ..++++|++++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999999999998874 4699999999997321 1123456788899988864 3456666665433
Q ss_pred C-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhh-------CC-CCCCHHHHHHH
Q 002159 824 D-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKK-------CP-PNFTGADMYAL 889 (958)
Q Consensus 824 ~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~-------~t-~g~sGaDi~~l 889 (958)
+ .++|++.+ ||+..|.+|. ++.+++..|++.+++.....-+. -+..+++. .. ..-.|+.+.++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~-~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPD-YTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECC-CCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 2 37899998 9999999994 88999999999998765432222 23344321 11 12357889999
Q ss_pred HHHHHHHHHHHHhc
Q 002159 890 CADAWFHAAKRKVL 903 (958)
Q Consensus 890 ~~~A~~~A~~r~~~ 903 (958)
+..|......|.+.
T Consensus 231 ~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 231 IEKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHHhc
Confidence 99888887777653
No 80
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-20 Score=198.48 Aligned_cols=238 Identities=27% Similarity=0.380 Sum_probs=168.4
Q ss_pred ccccccccccccccceeeeccccchhh-hh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcC---------Cceeeeccc
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDL-FS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECS---------LNFLSVKGP 742 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~-~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~---------~~~i~v~~~ 742 (958)
|+.+.=-..+|+.+..+....+...+. .+ .-+...+-|||+||||||||+|+||+|..+. ...+.++..
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 555544445666655443222211110 11 1233355699999999999999999999883 458899999
Q ss_pred hhhhccccchhhhHHHHHHHHHhc---CCc--EEEEcccccccCCCCCC--CCCcchHHHHHHHHHHhhcCCCCCCCcEE
Q 002159 743 ELINMYIGESEKNVRDIFQKARSA---RPC--VIFFDELDSLAPARGAS--GDSGGVMDRVVSQMLAEIDGLNDSSQDLF 815 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~---~P~--ILfiDEiD~l~~~r~~~--~~~~~~~~rv~~~LL~~ldg~~~~~~~v~ 815 (958)
.++++|++|+.+.+.++|++.... ..+ .++|||+++++..|.+. +......-|++|.+|++||.+.. ..+|+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-~~Nvl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-YPNVL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-CCCEE
Confidence 999999999999999999998753 223 45699999999888532 22223346999999999999974 57999
Q ss_pred EEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-----C--------C-----CcCHHHHHhhC
Q 002159 816 IIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-----L--------E-----DVSLYSIAKKC 877 (958)
Q Consensus 816 VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-----~--------~-----d~~l~~la~~~ 877 (958)
+++|+|-.+.||.|+.. |-|...|++. |..+.+.+|++..+..+-- . . +.....+.+..
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~-Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGP-PTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCC-ccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 99999999999999998 9999999995 9999999999988754310 0 0 11122333333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 878 PPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 878 t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
+.|.||+-|+.|=- .|.... .....++.++|..|+...
T Consensus 377 ~~gLSGRtlrkLP~----Laha~y---------------~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPL----LAHAEY---------------FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred hcCCccchHhhhhH----HHHHhc---------------cCCCccChHHHHHHHHHH
Confidence 58888888776632 222222 122468889999988753
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=5.6e-19 Score=194.44 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=170.0
Q ss_pred ccccccccccccceeeeccccchhhhh-cCCC---CCCcEEEecCCCChhHHHHHHHHHHcC-------Cceeeeccchh
Q 002159 676 DVGGLEDVKKSILDTVQLPLLHKDLFS-SGLR---KRSGVLLYGPPGTGKTLLAKAVATECS-------LNFLSVKGPEL 744 (958)
Q Consensus 676 di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~---~~~~iLL~GppGtGKTtLakaiA~~~~-------~~~i~v~~~~l 744 (958)
+++|++++|+.+.+.+.+ ...+..+. .|+. ++.+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 489999999999887766 33333333 4554 355899999999999999999998763 37999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC-
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP- 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp- 823 (958)
.+.|+|+++.+++++|+.|. ++||||||+|.+.+.++ .......+++.|+..|+.. ..+++||+|++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 99999999889999998874 47999999999975432 1234567889999999853 3578888887643
Q ss_pred -C---CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcC-HHHHHhh----CC-CCC-CHHHHHHHHHH
Q 002159 824 -D---LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS-LYSIAKK----CP-PNF-TGADMYALCAD 892 (958)
Q Consensus 824 -~---~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~-l~~la~~----~t-~g~-sGaDi~~l~~~ 892 (958)
+ .++|+|.+ ||+..|+||. ++.+++..|++.++++....-+.+ +..++.. +. +.+ .++++++++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~-l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPD-YSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCC-cCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 3 35899999 9999999995 889999999999998753221111 2333322 11 223 37899999999
Q ss_pred HHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHH
Q 002159 893 AWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 930 (958)
Q Consensus 893 A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~a 930 (958)
|......|....... .....+-..|+.+|+..+
T Consensus 249 ~~~~~~~r~~~~~~~-----~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 249 ARLRQANRLFCDLDR-----VLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHHHhcCcCC-----CCCHHHHhCCCHHHHhhc
Confidence 988887776533111 111122235677776554
No 82
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8e-19 Score=195.70 Aligned_cols=207 Identities=23% Similarity=0.364 Sum_probs=148.4
Q ss_pred ccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcccc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 750 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~G 750 (958)
.+++.+.--.+.|+.+.+-+.......+.+. .|..-.+|.|||||||||||+++.|+|+.++..++-+.-++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 4566666566778877777666666666666 4888899999999999999999999999999999888766552
Q ss_pred chhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC----c-chHHHHHHHHHHhhcCCCCCC-CcEEEEEecCCCC
Q 002159 751 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS----G-GVMDRVVSQMLAEIDGLNDSS-QDLFIIGASNRPD 824 (958)
Q Consensus 751 ese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~----~-~~~~rv~~~LL~~ldg~~~~~-~~v~VI~aTNrp~ 824 (958)
... .++.++..+... +||+|.+||.-+..++..... . ....-.++.||+.+||+..+- +.-+||.|||+++
T Consensus 273 ~n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 222 278887766544 699999999987644432221 1 112346899999999997643 3578888999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhC-CCCCCHHHHHHH
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKC-PPNFTGADMYAL 889 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~-t~g~sGaDi~~l 889 (958)
.|||||+||||.|.+||++.+ ..++-..+++.++.... +..-+.++.+.. ..-.|.||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyC-tf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYC-TFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCC-CHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999984 55665666665554321 122234444421 124589998754
No 83
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.4e-18 Score=186.79 Aligned_cols=177 Identities=26% Similarity=0.440 Sum_probs=139.7
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCC-cEEEEcccccccCCCCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARP-CVIFFDELDSLAPARGA 785 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P-~ILfiDEiD~l~~~r~~ 785 (958)
+-++|+||||||||||++|+-||...|+.+-...|.++.-. -.+.-..+.++|+.|..... -+|||||+|.++..|..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 45689999999999999999999999999888888776432 22345678999999987654 48899999999988875
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC
Q 002159 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL 865 (958)
Q Consensus 786 ~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~ 865 (958)
..-+ +..+..+|.||-.-- ..+++++++.|||+|..+|.|+-. |||.+|+||+ |..++|..+|..++.++-+.
T Consensus 462 tymS-EaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpL-PGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 462 TYMS-EAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPL-PGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hhhc-HHHHHHHHHHHHHhc---ccccceEEEeccCCccchhHHHHh--hhhheeecCC-CChHHHHHHHHHHHHHHhcC
Confidence 4433 345667788775432 345788999999999999999998 9999999999 88999999998887654211
Q ss_pred C-----------------------C----cCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 866 E-----------------------D----VSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 866 ~-----------------------d----~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
+ . --+.+.|+. |+||||.+|..|+..
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk-TeGfSGREiakLva~ 587 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK-TEGFSGREIAKLVAS 587 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh-ccCCcHHHHHHHHHH
Confidence 1 0 114567888 699999999999864
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.69 E-value=1e-16 Score=155.31 Aligned_cols=129 Identities=21% Similarity=0.411 Sum_probs=101.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCC-CeEEeecchhhhhhcccCCCCC
Q 002159 400 VLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS-PTILLLRDFDVFRNLVSNESLP 478 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~-P~IL~iDeid~L~~~~s~~~~~ 478 (958)
|||+||||||||++++.+|..++.+++.+++.++.+.+.++....+...|+.+.... |+|++|||+|.+.... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~--- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QP--- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-ST---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-cc---
Confidence 699999999999999999999999999999999998888999999999999998887 9999999999998843 11
Q ss_pred CccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhh-ccccEEEEcC
Q 002159 479 NDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIR-RCFSHEISMG 551 (958)
Q Consensus 479 ~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alr-rrf~~eIsig 551 (958)
........+...+....+.. .....+++||++||.++.+++.++ +||.+.+.++
T Consensus 77 -~~~~~~~~~~~~L~~~l~~~------------------~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 77 -SSSSFEQRLLNQLLSLLDNP------------------SSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSHHHHHHHHHHHHHHHTT------------------TTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred -ccccccccccceeeeccccc------------------ccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 11112222222222222111 111467999999999999999999 9999999876
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.68 E-value=2.5e-16 Score=194.79 Aligned_cols=244 Identities=23% Similarity=0.365 Sum_probs=168.0
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
..+++.|.+.....+.+.+ ..+...+++|+||||||||++++++|..+ +..++.++..
T Consensus 180 ~l~~~igr~~ei~~~~~~L------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHH------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 4556667665544332221 12345689999999999999999999987 6778999988
Q ss_pred hhh--hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 743 ELI--NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 743 ~l~--~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
.+. .+|.|+.++.++++|+.++...|+||||||+|.+.+.+..++.+ . .+.+.|...|. .+.+.+||||
T Consensus 248 ~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~---~-~~~~~L~~~l~-----~g~i~~IgaT 318 (731)
T TIGR02639 248 SLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS---M-DASNLLKPALS-----SGKLRCIGST 318 (731)
T ss_pred HHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc---H-HHHHHHHHHHh-----CCCeEEEEec
Confidence 887 57999999999999999988889999999999998765322211 1 12333444443 3679999999
Q ss_pred CCCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-----CCcCHHHHHhhCCCCCCHHH-----
Q 002159 821 NRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-----EDVSLYSIAKKCPPNFTGAD----- 885 (958)
Q Consensus 821 Nrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-----~d~~l~~la~~~t~g~sGaD----- 885 (958)
|..+ .+|+||.| ||+ .|+++. |+.+++..||+.+...+... .+..+..++.. +..|-+..
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~-p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~l-s~ryi~~r~~P~k 393 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGE-PSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVEL-SARYINDRFLPDK 393 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCC-CCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHh-hhcccccccCCHH
Confidence 9743 57999999 997 689996 89999999999877654221 23334555555 35554432
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC--C--CCCHHHHHHHHHHHHHhhc
Q 002159 886 MYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS--P--SLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 886 i~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~--p--s~s~~~l~~y~~~~~~~~~ 955 (958)
--.++.+|+..+.-+ .. ......|+.+|+.+++..+. | .+++++..++..+.+.+..
T Consensus 394 ai~lld~a~a~~~~~---~~----------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 394 AIDVIDEAGASFRLR---PK----------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred HHHHHHHhhhhhhcC---cc----------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 234444444322111 00 01123689999999999873 3 4577888888888777653
No 86
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=3.9e-16 Score=194.08 Aligned_cols=233 Identities=25% Similarity=0.332 Sum_probs=159.6
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh---------
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI--------- 745 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~--------- 745 (958)
+++.|++.+|+.+.+.+..+... +-.++..++|+||||||||++|++||+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35788999998887754322211 222345799999999999999999999999999988654322
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----C-------CCCCCc
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----L-------NDSSQD 813 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~-------~~~~~~ 813 (958)
..|+|.....+.+.|..+....| ||||||||.+.+... ++ ..+.||..||. + .....+
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~--~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR--GD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC--CC-------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 35888888888899998877666 899999999985321 11 23455555552 1 111247
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHh-----hccCC------CCcCHHHHHhhCCCCCC
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR-----KFKLL------EDVSLYSIAKKCPPNFT 882 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~-----~~~~~------~d~~l~~la~~~t~g~s 882 (958)
+++|+|||+++.|+++|++ ||+ .|.++. ++.+++..|++.++. ...+. .+..+..+++..+..+-
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~-~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSG-YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCC-CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 8999999999999999999 996 788985 888999999987652 11111 12245667776666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 883 GADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 883 GaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
.++|+..+...+..++++....... .......+.++.+++++.+.
T Consensus 540 ~R~l~r~i~~~~~~~~~~~~~~~~~-----~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 540 VRNLERQIEKICRKAAVKLVEQGEK-----KKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccCc-----ccCCcccccCCHHHHHHhcC
Confidence 7888888777776666554421110 00011234677777666654
No 87
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=4.2e-15 Score=181.83 Aligned_cols=222 Identities=21% Similarity=0.315 Sum_probs=157.4
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhh--hccccchhhhHHHHHHHHHhcCCcEEEEc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSARPCVIFFD 774 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~--~~~~Gese~~vr~lf~~A~~~~P~ILfiD 774 (958)
...+++|+||||||||++|+++|... +..++.++...++ .+|.|+.++.++.+|+.++...++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 35678999999999999999999874 4566777666666 46899999999999999988889999999
Q ss_pred ccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-----CCChhhcCcCCccceeeccCCCCHH
Q 002159 775 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVS 849 (958)
Q Consensus 775 EiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~ 849 (958)
|+|.+++.++..+.. . .+.+.|...+ ..+.+.||+|||.++ ..|+||.| ||+ .|+++. |+.+
T Consensus 286 EIh~L~g~g~~~~g~---~-d~~nlLkp~L-----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~e-Ps~~ 352 (758)
T PRK11034 286 EIHTIIGAGAASGGQ---V-DAANLIKPLL-----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITE-PSIE 352 (758)
T ss_pred cHHHHhccCCCCCcH---H-HHHHHHHHHH-----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCC-CCHH
Confidence 999999765422211 1 1222222222 246799999999876 57999999 996 799996 8999
Q ss_pred HHHHHHHHHHhhccCCCCcCHHHHHhh---------CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcc
Q 002159 850 YRERVLKALTRKFKLLEDVSLYSIAKK---------CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSV 920 (958)
Q Consensus 850 ~r~~Il~~~~~~~~~~~d~~l~~la~~---------~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~ 920 (958)
++..||+.+..++....++++...|-. .+..|-....-.++.+|+.... .. ... ....
T Consensus 353 ~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~--~~-~~~----------~~~~ 419 (758)
T PRK11034 353 ETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR--LM-PVS----------KRKK 419 (758)
T ss_pred HHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhc--cC-ccc----------cccc
Confidence 999999999988887777776444432 2334445577888888776431 10 000 0112
Q ss_pred cccHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhh
Q 002159 921 VVEYDDFVKVLRELSP----SLSMAELKKYELLRDQFE 954 (958)
Q Consensus 921 ~i~~~df~~al~~~~p----s~s~~~l~~y~~~~~~~~ 954 (958)
.|+.+|+.+++....- .+..++.+.+..+.+++.
T Consensus 420 ~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 420 TVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred ccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhc
Confidence 4778888888877543 234556666666665553
No 88
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.9e-15 Score=160.13 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
...+.+..+....-+.... -.+-++|++|||||||||+++|-+|...|+++-...+.++. ....+....+.++|+.+.
T Consensus 362 sLe~Rie~lA~aTaNTK~h-~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWak 439 (630)
T KOG0742|consen 362 SLEKRIEDLAIATANTKKH-QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAK 439 (630)
T ss_pred HHHHHHHHHHHHhcccccc-cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHh
Confidence 4455555554433332111 23347899999999999999999999999999888877643 334566788999999998
Q ss_pred cCC-CeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC
Q 002159 454 SYS-PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS 532 (958)
Q Consensus 454 ~~~-P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~ 532 (958)
... ..++||||.|++...+.....+.++ .+.+..+|-+-.++ ...++++.+||+
T Consensus 440 kS~rGLllFIDEADAFLceRnktymSEaq---RsaLNAlLfRTGdq----------------------SrdivLvlAtNr 494 (630)
T KOG0742|consen 440 KSRRGLLLFIDEADAFLCERNKTYMSEAQ---RSALNALLFRTGDQ----------------------SRDIVLVLATNR 494 (630)
T ss_pred hcccceEEEehhhHHHHHHhchhhhcHHH---HHHHHHHHHHhccc----------------------ccceEEEeccCC
Confidence 654 4577999999988765433211111 12233333222221 567889999999
Q ss_pred CCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc----------------------CCCCCcHHHHHHHhhhcC
Q 002159 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL----------------------TSDTGSEEFVKDIIGQTS 590 (958)
Q Consensus 533 ~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l----------------------~~D~~~~~~L~~la~~t~ 590 (958)
|.++|.++-.|++..++++.|.+++|..|+..++.+.-.. ....+.+..+.+.|+.|.
T Consensus 495 pgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTe 574 (630)
T KOG0742|consen 495 PGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTE 574 (630)
T ss_pred ccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988552111 001133566788999999
Q ss_pred CCChhhHHHHHHHHHHHH
Q 002159 591 GFMPRDLHALVADAGANL 608 (958)
Q Consensus 591 Gfv~~DL~~Lv~eA~~~a 608 (958)
||+++.|..|+......+
T Consensus 575 GfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 575 GFSGREIAKLVASVQAAV 592 (630)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 999999999986543333
No 89
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=1.7e-14 Score=162.63 Aligned_cols=234 Identities=23% Similarity=0.323 Sum_probs=157.9
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 751 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ge 751 (958)
.+|+++.|.+..++.+...+... ...-.+..+++||||||||||++|+++|++++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~-------~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------ 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAA-------KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHH-------HhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------
Confidence 47899999999888776544211 11123456899999999999999999999999988877765432
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------C-------CCCcEEE
Q 002159 752 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------D-------SSQDLFI 816 (958)
Q Consensus 752 se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~-------~~~~v~V 816 (958)
....+..++... ..++||||||+|.+... .... +...|+... . ....+.+
T Consensus 89 ~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~----------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 KPGDLAAILTNL--EEGDVLFIDEIHRLSPV----------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred ChHHHHHHHHhc--ccCCEEEEecHhhcchH----------HHHH---HHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 123344455443 34689999999998631 1122 222222110 0 1134788
Q ss_pred EEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002159 817 IGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWF 895 (958)
Q Consensus 817 I~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~~l~~~A~~ 895 (958)
|+|||++..++++|++ ||...+.++. ++.+++.+|++...+...+.- +..+..|++.| .|+ .+.+..+++.+..
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~-~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G~-pR~a~~~l~~~~~ 228 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEF-YTVEELEKIVKRSARILGVEIDEEGALEIARRS-RGT-PRIANRLLRRVRD 228 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCC-chHHHHHHHHHHH
Confidence 9999999999999988 9999999995 888999999998877654332 23378889886 554 4777788877666
Q ss_pred HHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhhc
Q 002159 896 HAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS---LSMAELKKYELLRDQFEG 955 (958)
Q Consensus 896 ~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps---~s~~~l~~y~~~~~~~~~ 955 (958)
.|..+. ...|+.++..+++..+... ++..+.+.++.+.+.|.+
T Consensus 229 ~a~~~~-----------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 229 FAQVKG-----------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHcC-----------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 655331 1146777777777776544 455566666556666654
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=3.7e-14 Score=158.26 Aligned_cols=193 Identities=23% Similarity=0.327 Sum_probs=130.5
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccch
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 752 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ges 752 (958)
+|+++.|.+++++.+...+... ...-....+++|+||||||||+||+++|.+++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~-------~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAA-------KMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHH-------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 5889999999988876554211 111233567999999999999999999999998877666543321
Q ss_pred hhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC---------------CCCCcEEEE
Q 002159 753 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN---------------DSSQDLFII 817 (958)
Q Consensus 753 e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~---------------~~~~~v~VI 817 (958)
...+...+... ..+.+|||||+|.+.+. ....|+..|+... .....+.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 12233333332 34679999999998632 1122333332111 012347899
Q ss_pred EecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002159 818 GASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFH 896 (958)
Q Consensus 818 ~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~ 896 (958)
++||++..+++++++ ||...+.++. ++.++..+|++...+..... ++..++.+++.+ .|+- +.+..+|..++..
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~-l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEF-YTVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTP-RIANRLLRRVRDF 208 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCC-CCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCc-chHHHHHHHHHHH
Confidence 999999999999998 9998899995 78888899988877654332 223467888885 6654 6667888876655
Q ss_pred HH
Q 002159 897 AA 898 (958)
Q Consensus 897 A~ 898 (958)
|.
T Consensus 209 a~ 210 (305)
T TIGR00635 209 AQ 210 (305)
T ss_pred HH
Confidence 54
No 91
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-14 Score=154.04 Aligned_cols=155 Identities=19% Similarity=0.329 Sum_probs=123.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC---------cEEEEecCcccccchhchHHHHHHHHHHhhcC---C--CeE
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGI---------HVVEYSCHNLMASSERKTSAALAQAFNTAQSY---S--PTI 459 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~---------~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~---~--P~I 459 (958)
+...+-||||||||||||+|+|++|..+.. +.++||++.+++++.+++.+.+.++|++.... . -..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 355677999999999999999999999843 68999999999999999999999999876532 2 234
Q ss_pred EeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChh
Q 002159 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPT 539 (958)
Q Consensus 460 L~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~a 539 (958)
++|||+++|+..|....+.++.......|.++|.++ +.....++|++.+|+|-.+.+|.+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl--------------------DrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL--------------------DRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH--------------------HHhccCCCEEEEeccchHHHHHHH
Confidence 589999999987644333333333334455555443 345558899999999999999999
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccC
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
+..|-+-...+|.|+...|++|++..+.+
T Consensus 314 fVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 314 FVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred hhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 92
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.57 E-value=1.5e-14 Score=150.09 Aligned_cols=186 Identities=23% Similarity=0.330 Sum_probs=114.1
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 751 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ge 751 (958)
.+++|+.|+++++..+.-.+.... ..-.+-.+++||||||+||||||+.||++++.+|...+++.+-
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~-------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------ 87 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAK-------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------ 87 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHH-------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------
T ss_pred CCHHHccCcHHHHhhhHHHHHHHH-------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------
Confidence 368999999999887543321110 0112346899999999999999999999999999999886542
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CC-------CCcEEE
Q 002159 752 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DS-------SQDLFI 816 (958)
Q Consensus 752 se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~-------~~~v~V 816 (958)
....+..++.... ...||||||||.+. ..+...|+..|+... .. -....+
T Consensus 88 k~~dl~~il~~l~--~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 KAGDLAAILTNLK--EGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp SCHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred hHHHHHHHHHhcC--CCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1233444554443 34699999999986 334556666665321 11 124789
Q ss_pred EEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhhCCCCCCHHHHHHHH
Q 002159 817 IGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 817 I~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~~t~g~sGaDi~~l~ 890 (958)
||||++...|.+.|+. ||.....+.. .+.++-..|++...+...+.-+. ...+||.++ . -+.+---+++
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~-Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs-r-GtPRiAnrll 222 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEF-YSEEELAKIVKRSARILNIEIDEDAAEEIARRS-R-GTPRIANRLL 222 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE-----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT-T-TSHHHHHHHH
T ss_pred eeeeccccccchhHHh--hcceecchhc-CCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc-C-CChHHHHHHH
Confidence 9999999999999998 9998888886 78888888887666655443222 356788884 3 3554433443
No 93
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=4.3e-14 Score=155.78 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=140.0
Q ss_pred CcCCchHHHHHHHHHHhhcCCCccc---C---CCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCccc
Q 002159 368 FVPLQGDTVKILASILAPTLCPSVL---S---LKFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLM 434 (958)
Q Consensus 368 ~~~l~~~~~k~L~~ii~p~l~p~~~---~---~~~~~~VLL~GppGtGKTTLaraIA~~lg-------~~~~~I~~~~l~ 434 (958)
.+++. ++.+++.+++.....+..+ + .+.+.+++|+|||||||||+|+++|..+. .+++++++.++.
T Consensus 25 l~Gl~-~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 25 LVGLA-PVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred cCCcH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 44444 3455555554333222111 1 23456799999999999999999998762 258999999998
Q ss_pred ccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchh
Q 002159 435 ASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK 514 (958)
Q Consensus 435 s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~ 514 (958)
+.+.|+++......|+.+. ++||||||++.+.... + ......++...|..+++.
T Consensus 104 ~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~---~----~~~~~~e~~~~L~~~me~---------------- 157 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD---N----ERDYGSEAIEILLQVMEN---------------- 157 (287)
T ss_pred HHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC---C----ccchHHHHHHHHHHHHhc----------------
Confidence 8888888877888888764 4899999999986421 1 011223333333333321
Q ss_pred hhhhhhcCcEEEEEecCCC-----CCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc
Q 002159 515 EIEKICRQQVLLVAAADSS-----EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT 589 (958)
Q Consensus 515 ~~~~~~~~~ViVIaaTn~~-----~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t 589 (958)
....++||++++.. ..++|++++||...+.++.|+..++.+|+..++.+......+......+..+.+..
T Consensus 158 -----~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~ 232 (287)
T CHL00181 158 -----QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRM 232 (287)
T ss_pred -----CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Confidence 14567888887532 13468999999999999999999999999999976443221222122223233222
Q ss_pred --CCCC-hhhHHHHHHHHHHHHHHhh
Q 002159 590 --SGFM-PRDLHALVADAGANLIRKS 612 (958)
Q Consensus 590 --~Gfv-~~DL~~Lv~eA~~~a~~r~ 612 (958)
..|. ++++..++..+......|.
T Consensus 233 ~~~~~GNaR~vrn~ve~~~~~~~~r~ 258 (287)
T CHL00181 233 EQPLFANARSVRNALDRARMRQANRI 258 (287)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3355 7999999988877766553
No 94
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.52 E-value=5.4e-14 Score=159.19 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC----CChhhHHHH
Q 002159 532 SSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG----FMPRDLHAL 600 (958)
Q Consensus 532 ~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G----fv~~DL~~L 600 (958)
...++.+.+..+....+|+| ++.|..+++.++.++++| |+|.+...||+.++.++.. .+.|+-.+|
T Consensus 206 ~glgf~~~m~~k~~~~~SgG---wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 206 HGLGFLSEMQDKKVKDLSGG---WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFL 282 (614)
T ss_pred HhcCCCHhHHHHHhhccCch---HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhh
Confidence 34466677777777899999 999999999999998877 6777889999999988876 456766665
Q ss_pred H
Q 002159 601 V 601 (958)
Q Consensus 601 v 601 (958)
.
T Consensus 283 n 283 (614)
T KOG0927|consen 283 N 283 (614)
T ss_pred h
Confidence 4
No 95
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.49 E-value=5.9e-13 Score=145.38 Aligned_cols=143 Identities=18% Similarity=0.285 Sum_probs=106.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---G----IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l---g----~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~ 467 (958)
+...+++|+|||||||||+|+++|+.+ + .++++++|.++.+.+.+++...++..|+.+. ++||||||+|.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~ 116 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYS 116 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhh
Confidence 344679999999999999999999875 2 3688899999999999999999999998875 47999999999
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCChhhhc
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPTIRR 542 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~alrr 542 (958)
|.... +.......+..++..+.+ ...++++|++++.. ..++|++++
T Consensus 117 L~~~~-------~~~~~~~~i~~Ll~~~e~----------------------~~~~~~vila~~~~~~~~~~~~~p~L~s 167 (261)
T TIGR02881 117 LARGG-------EKDFGKEAIDTLVKGMED----------------------NRNEFVLILAGYSDEMDYFLSLNPGLRS 167 (261)
T ss_pred hccCC-------ccchHHHHHHHHHHHHhc----------------------cCCCEEEEecCCcchhHHHHhcChHHHh
Confidence 86410 000011233333333211 14556666665332 246889999
Q ss_pred cccEEEEcCCCCHHHHHHHHHHhccCC
Q 002159 543 CFSHEISMGPLTEQQRVEMLSQLLQPV 569 (958)
Q Consensus 543 rf~~eIsig~Pde~qR~~Il~~ll~~~ 569 (958)
||...+.++.++..++.+|++.++...
T Consensus 168 Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 168 RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999998654
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.48 E-value=4.5e-13 Score=147.75 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=135.9
Q ss_pred cCCchHHHHHHHHHHhhcCCCccc---C---CCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcccc
Q 002159 369 VPLQGDTVKILASILAPTLCPSVL---S---LKFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLMA 435 (958)
Q Consensus 369 ~~l~~~~~k~L~~ii~p~l~p~~~---~---~~~~~~VLL~GppGtGKTTLaraIA~~lg-------~~~~~I~~~~l~s 435 (958)
+++. +..+++.+++.....+..+ + ..++.+++|+||||||||++|+++|..+. .+++.+++.++.+
T Consensus 25 ~Gl~-~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 25 IGLK-PVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence 3443 4555666655443332221 2 23456899999999999999999998762 2689999999888
Q ss_pred cchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhh
Q 002159 436 SSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE 515 (958)
Q Consensus 436 ~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~ 515 (958)
.+.|.++..++..|+.+. +++|||||++.+...+ . ......++...|-++++.
T Consensus 104 ~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~-~------~~~~~~~~~~~Ll~~le~----------------- 156 (284)
T TIGR02880 104 QYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD-N------ERDYGQEAIEILLQVMEN----------------- 156 (284)
T ss_pred hhcccchHHHHHHHHHcc---CcEEEEechhhhccCC-C------ccchHHHHHHHHHHHHhc-----------------
Confidence 888888888888888774 4899999999986421 0 011222333333233221
Q ss_pred hhhhhcCcEEEEEecCCC--C---CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc-
Q 002159 516 IEKICRQQVLLVAAADSS--E---GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT- 589 (958)
Q Consensus 516 ~~~~~~~~ViVIaaTn~~--~---~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t- 589 (958)
....++||++++.. + .++|++++||...+.++.++.+++.+|++.++++.... .+.+....+..+....
T Consensus 157 ----~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~-l~~~a~~~L~~~l~~~~ 231 (284)
T TIGR02880 157 ----QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYR-FSAEAEEAFADYIALRR 231 (284)
T ss_pred ----CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHHhC
Confidence 14677888887542 2 34799999999999999999999999999999764321 1222222222222211
Q ss_pred --CC-CChhhHHHHHHHHHHHHHHh
Q 002159 590 --SG-FMPRDLHALVADAGANLIRK 611 (958)
Q Consensus 590 --~G-fv~~DL~~Lv~eA~~~a~~r 611 (958)
.. -..+.+..++..+......|
T Consensus 232 ~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 232 TQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHH
Confidence 11 23677888887776665554
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=9.8e-14 Score=173.53 Aligned_cols=149 Identities=26% Similarity=0.464 Sum_probs=115.9
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhh--hccccchhhhHHHHHHHHH-hcCCcEEE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKAR-SARPCVIF 772 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~--~~~~Gese~~vr~lf~~A~-~~~P~ILf 772 (958)
+...+++|+||||||||++++++|..+ +.+++.++...+. .+|.|+.++.++.+|+.+. ...++|||
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILf 276 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 276 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEE
Confidence 345689999999999999999999987 6788888887776 5689999999999999864 45789999
Q ss_pred EcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-----CCChhhcCcCCccceeeccCCCC
Q 002159 773 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSD 847 (958)
Q Consensus 773 iDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-----~ldpaLlrpgRfd~~I~v~~ppd 847 (958)
|||+|.+.+.++..+. ++ ..+-|...+ ..+.+.+||||+.++ .+|+|+.| ||+ .|+++. |+
T Consensus 277 IDEih~l~~~~~~~~~----~d-~~~~lkp~l-----~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~e-P~ 342 (857)
T PRK10865 277 IDELHTMVGAGKADGA----MD-AGNMLKPAL-----ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAE-PS 342 (857)
T ss_pred EecHHHhccCCCCccc----hh-HHHHhcchh-----hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCC-CC
Confidence 9999999876543221 11 222232222 246899999999987 48999999 998 578997 78
Q ss_pred HHHHHHHHHHHHhhccCCCCc
Q 002159 848 VSYRERVLKALTRKFKLLEDV 868 (958)
Q Consensus 848 ~~~r~~Il~~~~~~~~~~~d~ 868 (958)
.+.+..|++.+..++.....+
T Consensus 343 ~~~~~~iL~~l~~~~e~~~~v 363 (857)
T PRK10865 343 VEDTIAILRGLKERYELHHHV 363 (857)
T ss_pred HHHHHHHHHHHhhhhccCCCC
Confidence 899999999988766554433
No 98
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.4e-13 Score=147.91 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=105.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC-cccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCH-NLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~-~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
+-.++...|+||||-|||||++.||.+. .+++-.+-|. +++.... ..+..++..-.. ..-++.+-+.|.
T Consensus 287 Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t----~Ai~tvl~aD~k---Rl~lLeee~~L~ 359 (807)
T KOG0066|consen 287 IVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADST----SAIDTVLKADKK---RLALLEEEAKLM 359 (807)
T ss_pred EEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCc----HHHHHHHHhhHH---HHHHHHHHHHHH
Confidence 4567779999999999999999999874 2333333332 2222211 112222211110 111233333332
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEE
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEIS 549 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIs 549 (958)
... .++ ......++..+..++- ..+++..+.+...+. ...++++.+..|....++
T Consensus 360 ~q~-e~G----d~taaErl~~v~~ELr---------aiGA~sAEarARRIL-----------AGLGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 360 SQI-EEG----DTTAAERLKEVADELR---------AIGADSAEARARRIL-----------AGLGFSKEMQERPTTKFS 414 (807)
T ss_pred HHH-HcC----chHHHHHHHHHHHHHH---------HhccccchhHHHHHH-----------hhcCCChhHhcCCccccC
Confidence 211 011 0112233333333332 234555666666666 667899999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChhhHHHHH
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALV 601 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~DL~~Lv 601 (958)
+| |+.|+.++++++-.+.+| |+|.....||..+++-+.. .++||-.+|.
T Consensus 415 GG---WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 415 GG---WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLD 473 (807)
T ss_pred Cc---eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHH
Confidence 99 999999999998877655 6677778899999887765 7888866665
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.46 E-value=2.3e-13 Score=169.72 Aligned_cols=161 Identities=24% Similarity=0.408 Sum_probs=120.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhh--hccccchhhhHHHHHHHHHh-cCCcEEEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARS-ARPCVIFF 773 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~--~~~~Gese~~vr~lf~~A~~-~~P~ILfi 773 (958)
...+++|+||||||||++++.+|..+ +..++.++...+. ..|.|+.++.++.+|+.++. ..++||||
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFI 286 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 35689999999999999999999876 2457777776665 36899999999999999865 46899999
Q ss_pred cccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-----CCChhhcCcCCccceeeccCCCCH
Q 002159 774 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDV 848 (958)
Q Consensus 774 DEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-----~ldpaLlrpgRfd~~I~v~~ppd~ 848 (958)
||+|.+.+.++..+. . + +-+-|+..|. .+.+.+||||+..+ .+||||.| ||. .|+++. |+.
T Consensus 287 DEih~l~~~g~~~~~-~---d-~~n~Lkp~l~-----~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~e-ps~ 352 (852)
T TIGR03345 287 DEAHTLIGAGGQAGQ-G---D-AANLLKPALA-----RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEE-PDE 352 (852)
T ss_pred eChHHhccCCCcccc-c---c-HHHHhhHHhh-----CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCC-CCH
Confidence 999999976543221 1 1 2233333332 46789999998753 48999999 996 789995 899
Q ss_pred HHHHHHHHHHHhhccCCC-----CcCHHHHHhhCCCCCC
Q 002159 849 SYRERVLKALTRKFKLLE-----DVSLYSIAKKCPPNFT 882 (958)
Q Consensus 849 ~~r~~Il~~~~~~~~~~~-----d~~l~~la~~~t~g~s 882 (958)
+.+..||+.+.+.+.... +..+..++..+ .+|-
T Consensus 353 ~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls-~ryi 390 (852)
T TIGR03345 353 ETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS-HRYI 390 (852)
T ss_pred HHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc-cccc
Confidence 999999988887654333 33456666663 6775
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.45 E-value=8.3e-13 Score=163.07 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=155.0
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh---------
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI--------- 745 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~--------- 745 (958)
++..|++.+|+.+.+.+..... .+-.++..++|+||||+|||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 3478899999988765431111 1223466799999999999999999999999999888654432
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC------------CCCCCc
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL------------NDSSQD 813 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~------------~~~~~~ 813 (958)
..|.|.....+.+.+..+....| |+||||+|++.+... ++ ..+.|+..||.- .....+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~--g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR--GD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC--CC-------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 24777777777777777665555 899999999975421 11 234566555521 112367
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh-----ccCC------CCcCHHHHHhhCCCCCC
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK-----FKLL------EDVSLYSIAKKCPPNFT 882 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~-----~~~~------~d~~l~~la~~~t~g~s 882 (958)
+++|+|||.. .|+|+|+. ||+ .|.+. |++.++..+|.+.++.. ..+. .+--+..+++.++..|-
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~-~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLS-GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecC-CCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 9999999987 49999998 996 56666 36788888888777631 1111 11125666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHH
Q 002159 883 GADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 933 (958)
Q Consensus 883 GaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~ 933 (958)
.+.|+.+++..+..++.+.+... ....+.|+.+++.+.+..
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~----------~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDK----------SLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC----------CCceeeecHHHHHHHhCC
Confidence 78888888887777776654221 113457888888877763
No 101
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=8.5e-14 Score=170.04 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
++.+....+...++|+| +++|+.|++.++.+++++ ++|.....|+.++.....+ ++.||+.++..
T Consensus 137 gl~~~~~~~~~~~LSgG---erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~ 211 (638)
T PRK10636 137 GFSNEQLERPVSDFSGG---WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDP 211 (638)
T ss_pred CCCchhhcCchhhcCHH---HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 44433345566889999 999999999999998877 4555668899999888766 89999998863
No 102
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.43 E-value=3.1e-12 Score=135.09 Aligned_cols=237 Identities=25% Similarity=0.336 Sum_probs=154.1
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 751 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ge 751 (958)
-.|++..|.+.+|+.+.-.++.... .-..-.++|||||||.||||||..||++++.++-..+|+.+.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------ 89 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------ 89 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------
Confidence 4688899999999887544432211 123457899999999999999999999999999999998773
Q ss_pred hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHh--hc---CCCCC-------CCcEEEEEe
Q 002159 752 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAE--ID---GLNDS-------SQDLFIIGA 819 (958)
Q Consensus 752 se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~--ld---g~~~~-------~~~v~VI~a 819 (958)
....+..++...... +|+||||||.+.+. ..+++..-+.- +| |-... -....+|||
T Consensus 90 K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 90 KPGDLAAILTNLEEG--DVLFIDEIHRLSPA----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred ChhhHHHHHhcCCcC--CeEEEehhhhcChh----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 334455555554333 69999999999742 12222222111 11 21111 135789999
Q ss_pred cCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 002159 820 SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCADAWFHAA 898 (958)
Q Consensus 820 TNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~~t~g~sGaDi~~l~~~A~~~A~ 898 (958)
|.|..+|...|+. ||.....+.. ...++...|++...+.+.+.-+. ...++|++ ..| |.+=-..|.++..-.|.
T Consensus 158 TTr~G~lt~PLrd--RFGi~~rlef-Y~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r-SRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 158 TTRAGMLTNPLRD--RFGIIQRLEF-YTVEELEEIVKRSAKILGIEIDEEAALEIARR-SRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred ccccccccchhHH--hcCCeeeeec-CCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh-ccC-CcHHHHHHHHHHHHHHH
Confidence 9999999999988 9999999998 88899999998888777654433 35678887 344 34333334443332322
Q ss_pred HHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHhhc
Q 002159 899 KRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS---PSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 899 ~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~---ps~s~~~l~~y~~~~~~~~~ 955 (958)
-+ ....|+.+--.+|++.+. --+.+-+.+..+.+.++|.+
T Consensus 233 V~-----------------~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~G 275 (332)
T COG2255 233 VK-----------------GDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGG 275 (332)
T ss_pred Hh-----------------cCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCC
Confidence 11 111345555555555542 23455666666666666644
No 103
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.5e-13 Score=157.24 Aligned_cols=165 Identities=28% Similarity=0.455 Sum_probs=127.3
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc------hhhh--
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELIN-- 746 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~------~l~~-- 746 (958)
+|-.|++++|+++.|.+..... .+-..++-++|+||||+|||+++|.||..++..|+.++-. ++-+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 4567999999999887632211 2444577899999999999999999999999999987643 3322
Q ss_pred -ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC------------CCCCc
Q 002159 747 -MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN------------DSSQD 813 (958)
Q Consensus 747 -~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~------------~~~~~ 813 (958)
.|+|.....+-+.+++..-..| +++|||+|++. ++..||.. +.||..||--+ -.-..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChH-------HHHHHhcChhhccchhhhccccccchhh
Confidence 3999999999999999988888 88999999998 44444432 35555555211 12246
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHH
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 859 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~ 859 (958)
|++|+|+|..+.|+++|+. |+. +|.++= ...++...|-+.++
T Consensus 555 VLFicTAN~idtIP~pLlD--RME-vIelsG-Yv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RME-VIELSG-YVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhh--hhh-eeeccC-ccHHHHHHHHHHhh
Confidence 9999999999999999998 985 778874 77888888887776
No 104
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=1.8e-12 Score=149.13 Aligned_cols=220 Identities=24% Similarity=0.335 Sum_probs=142.1
Q ss_pred cccccccccccceeeeccccchhhh-h---cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh-hccccc
Q 002159 677 VGGLEDVKKSILDTVQLPLLHKDLF-S---SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGE 751 (958)
Q Consensus 677 i~Gl~~vk~~l~e~i~~~l~~~~~~-~---~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~-~~~~Ge 751 (958)
+.|++.+|+.+..++..++..-... . ....+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 6788888877754442111110000 0 0112357899999999999999999999999999999998875 368888
Q ss_pred hhhh-HHHHHHHH----HhcCCcEEEEcccccccCCCCCCC---CCcchHHHHHHHHHHhhcCCC----------CCCCc
Q 002159 752 SEKN-VRDIFQKA----RSARPCVIFFDELDSLAPARGASG---DSGGVMDRVVSQMLAEIDGLN----------DSSQD 813 (958)
Q Consensus 752 se~~-vr~lf~~A----~~~~P~ILfiDEiD~l~~~r~~~~---~~~~~~~rv~~~LL~~ldg~~----------~~~~~ 813 (958)
...+ +..+++.+ ....++||||||||.+..++.+.+ +.++ ..+.+.||..|||-. ....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~--~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSG--EGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCccc--HHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 6444 45555432 345789999999999987643211 1122 358889999998631 01123
Q ss_pred EEEEEecCCCC----------------------------------------------------CCChhhcCcCCccceee
Q 002159 814 LFIIGASNRPD----------------------------------------------------LIDPALLRPGRFDKLLY 841 (958)
Q Consensus 814 v~VI~aTNrp~----------------------------------------------------~ldpaLlrpgRfd~~I~ 841 (958)
.++|.|+|-.. .+.|+++ ||+|.+++
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeee
Confidence 45565555410 0234444 59999999
Q ss_pred ccCCCCHHHHHHHHH----HHHhhcc-------CC---CCcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 002159 842 VGVNSDVSYRERVLK----ALTRKFK-------LL---EDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRK 901 (958)
Q Consensus 842 v~~ppd~~~r~~Il~----~~~~~~~-------~~---~d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~ 901 (958)
+. |-+.+....|+. .+++.+. +. .+.-+..||+.+ ..+|-++-|+.++++.....+.+.
T Consensus 309 f~-~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 309 LE-ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 97 478999999987 3443221 11 112256777763 445566799999998888877664
No 105
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.42 E-value=1.3e-12 Score=155.91 Aligned_cols=212 Identities=21% Similarity=0.261 Sum_probs=137.2
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeee
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSV 739 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v 739 (958)
...+|+++.|.+...+.+...+ + -..+.+++|+||||||||++|+++...+ +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al---------~---~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAAL---------C---GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHH---------h---CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 3467888998887766664321 1 1235689999999999999999998653 3578888
Q ss_pred ccchh-------hhccccchhh----------------hHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHH
Q 002159 740 KGPEL-------INMYIGESEK----------------NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRV 796 (958)
Q Consensus 740 ~~~~l-------~~~~~Gese~----------------~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv 796 (958)
++... ....+|.... .-...+. .+...+|||||+|.+.+ ..
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~-------------~~ 191 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHP-------------VQ 191 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCH-------------HH
Confidence 86531 1111111000 0001122 23446999999999863 34
Q ss_pred HHHHHHhhcCCC-------------------------CCCCc-EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHH
Q 002159 797 VSQMLAEIDGLN-------------------------DSSQD-LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 850 (958)
Q Consensus 797 ~~~LL~~ldg~~-------------------------~~~~~-v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~ 850 (958)
.+.||..|+.-. ....+ .+|++|||.|+.|+|++++ |+. .|+++. ...++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~p-L~~ee 267 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRP-LLDEE 267 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCC-CCHHH
Confidence 455555443200 00112 4556667789999999999 986 566763 66888
Q ss_pred HHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHH
Q 002159 851 RERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 929 (958)
Q Consensus 851 r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~ 929 (958)
...|++...++.... ++..++.++..+ ++++++.++|+.|+..|..+. ...|+.+|++.
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~---~n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI~~ 327 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA---SNGREAVNIVQLAAGIALGEG-----------------RKRILAEDIEW 327 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHHHH
Confidence 999999988876532 222355666553 379999999999988776431 13589999999
Q ss_pred HHHH
Q 002159 930 VLRE 933 (958)
Q Consensus 930 al~~ 933 (958)
++..
T Consensus 328 vl~~ 331 (531)
T TIGR02902 328 VAEN 331 (531)
T ss_pred HhCC
Confidence 9873
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.42 E-value=4.5e-13 Score=167.86 Aligned_cols=184 Identities=27% Similarity=0.433 Sum_probs=133.3
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
.|+.+.|.+...+.+.+.+ ..+...+++|+||||||||++|+++|... +..++.++..
T Consensus 177 ~~~~~igr~~ei~~~~~~L------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 177 NLDPVIGREKEIERVIQIL------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred CCCCCCCcHHHHHHHHHHH------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 4667777776665554432 23346689999999999999999999986 3679999988
Q ss_pred hhh--hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 743 ELI--NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 743 ~l~--~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
.++ .+|.|+.|+.++.+|+.++...++||||||+|.+.+.++..+.. .+.+-|...+. .+.+.+||||
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l~-----rg~l~~IgaT 314 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI-----DAANILKPALA-----RGELQCIGAT 314 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc-----cHHHHhHHHHh-----CCCcEEEEeC
Confidence 887 57999999999999999988889999999999999765432211 12222222222 4678999999
Q ss_pred CCCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc----cC-CCCcCHHHHHhhCCCCCCH
Q 002159 821 NRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF----KL-LEDVSLYSIAKKCPPNFTG 883 (958)
Q Consensus 821 Nrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~----~~-~~d~~l~~la~~~t~g~sG 883 (958)
+..+ ..||++.| ||.. |.++. |+.++...|++.+...+ .+ -++..+..++.. +.+|.+
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~~-I~v~e-p~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~l-s~~yi~ 382 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQP-VYVGE-PSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKL-SDQYIA 382 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cceE-EecCC-CCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCc
Confidence 9775 57999999 9974 78886 77888888988765432 22 123335566665 467764
No 107
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.3e-12 Score=147.44 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 533 ~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..++.+..+.+....+|+| |++|++++++++.++++| |+|+....||+.++..+.. .|+||..+|..
T Consensus 184 glGFt~emq~~pt~slSGG---WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 184 GLGFTPEMQLQPTKSLSGG---WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred hCCCCHHHHhccccccCcc---hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 3577888888888999999 999999999999999988 4455568999999998876 78999999985
Q ss_pred HH
Q 002159 603 DA 604 (958)
Q Consensus 603 eA 604 (958)
-+
T Consensus 261 V~ 262 (582)
T KOG0062|consen 261 VC 262 (582)
T ss_pred HH
Confidence 43
No 108
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.41 E-value=3.5e-12 Score=140.68 Aligned_cols=177 Identities=25% Similarity=0.420 Sum_probs=112.5
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 751 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ge 751 (958)
.+++++.|++.+...-. ++ ...+. -..-..++|||||||||||||++||+..+.+|..+++.. .
T Consensus 21 ~~lde~vGQ~HLlg~~~-----~l--rr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~ 84 (436)
T COG2256 21 KSLDEVVGQEHLLGEGK-----PL--RRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------S 84 (436)
T ss_pred CCHHHhcChHhhhCCCc-----hH--HHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------c
Confidence 45777888776543210 00 00111 122356999999999999999999999999999998632 3
Q ss_pred hhhhHHHHHHHHHhcC----CcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec-CCCC-C
Q 002159 752 SEKNVRDIFQKARSAR----PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS-NRPD-L 825 (958)
Q Consensus 752 se~~vr~lf~~A~~~~----P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT-Nrp~-~ 825 (958)
+-+.+|++|+.|++.. ..|||+|||+.+.... ...||-.|+ .+.+++|||| -.|. .
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------------QD~lLp~vE-----~G~iilIGATTENPsF~ 146 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHVE-----NGTIILIGATTENPSFE 146 (436)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------------hhhhhhhhc-----CCeEEEEeccCCCCCee
Confidence 4578999999996533 4799999999997432 224555554 3566666665 4454 8
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHH-HHh-hccCC------CCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKA-LTR-KFKLL------EDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~-~~~-~~~~~------~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
|.+||++ |......-|+ +.+.-..+++. ... ...+. ++.-++.++.. +.+|.+.+.+
T Consensus 147 ln~ALlS--R~~vf~lk~L--~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~-----s~GD~R~aLN 211 (436)
T COG2256 147 LNPALLS--RARVFELKPL--SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL-----SNGDARRALN 211 (436)
T ss_pred ecHHHhh--hhheeeeecC--CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh-----cCchHHHHHH
Confidence 9999999 8865444444 55555555554 332 22222 12223444443 5677776655
No 109
>PLN03073 ABC transporter F family; Provisional
Probab=99.39 E-value=5.8e-13 Score=163.58 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=60.0
Q ss_pred cCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCC-------CCCcH
Q 002159 507 SHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTS-------DTGSE 579 (958)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~-------D~~~~ 579 (958)
.++|..+.+..... ...++++..+.+...++|+| +++|+.|++.++.+++.+.+ |....
T Consensus 315 ~~~~~~~~r~~~~L-----------~~lgl~~~~~~~~~~~LSgG---~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 315 IDAYTAEARAASIL-----------AGLSFTPEMQVKATKTFSGG---WRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred cCcchHHHHHHHHH-----------HHCCCChHHHhCchhhCCHH---HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 34565555555444 44566656666777899999 99999999999999887744 44457
Q ss_pred HHHHHHhhhcCC---CChhhHHHHH
Q 002159 580 EFVKDIIGQTSG---FMPRDLHALV 601 (958)
Q Consensus 580 ~~L~~la~~t~G---fv~~DL~~Lv 601 (958)
.|+.++.....+ ++.||+..+.
T Consensus 381 ~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 381 LWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHH
Confidence 788888877655 8899998876
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.39 E-value=9.8e-13 Score=165.23 Aligned_cols=162 Identities=25% Similarity=0.438 Sum_probs=122.0
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhh--hccccchhhhHHHHHHHHHh-cCCcEEE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARS-ARPCVIF 772 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~--~~~~Gese~~vr~lf~~A~~-~~P~ILf 772 (958)
+...+++|+||||||||++++++|..+ +.+++.++...+. .+|.|+.++.++.+|+.+.. ..|+|||
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILf 271 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILF 271 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 345789999999999999999999876 5678888877775 57899999999999999865 4689999
Q ss_pred EcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-----CCChhhcCcCCccceeeccCCCC
Q 002159 773 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSD 847 (958)
Q Consensus 773 iDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-----~ldpaLlrpgRfd~~I~v~~ppd 847 (958)
|||+|.+.+.+...+ .. ...+.|...+ ..+.+.+||||+..+ .+|+|+.| ||+ .|+++. |+
T Consensus 272 IDEih~l~~~g~~~~----~~-d~~~~Lk~~l-----~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~-p~ 337 (852)
T TIGR03346 272 IDELHTLVGAGKAEG----AM-DAGNMLKPAL-----ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDE-PT 337 (852)
T ss_pred eccHHHhhcCCCCcc----hh-HHHHHhchhh-----hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCC-CC
Confidence 999999986543221 11 1223332222 246799999999875 47999999 996 578996 78
Q ss_pred HHHHHHHHHHHHhhccCCCCcC-----HHHHHhhCCCCCC
Q 002159 848 VSYRERVLKALTRKFKLLEDVS-----LYSIAKKCPPNFT 882 (958)
Q Consensus 848 ~~~r~~Il~~~~~~~~~~~d~~-----l~~la~~~t~g~s 882 (958)
.+++..|++.+..++.....+. +...+.. +++|.
T Consensus 338 ~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l-s~~yi 376 (852)
T TIGR03346 338 VEDTISILRGLKERYEVHHGVRITDPAIVAAATL-SHRYI 376 (852)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh-ccccc
Confidence 9999999999988876655543 4444544 35664
No 111
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=6.2e-12 Score=143.93 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=122.8
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC---------Cceeeeccchhh
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS---------LNFLSVKGPELI 745 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~---------~~~i~v~~~~l~ 745 (958)
+++.|-+...+.+...+.. ... + ..+..++++||||||||+++++++.++. ..++.+++....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~------~~~-~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRP------ILR-G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHH------HHc-C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3566766666555443311 011 1 2346799999999999999999998653 456777764432
Q ss_pred h----------ccc--cc--------hhhhHHHHHHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhh
Q 002159 746 N----------MYI--GE--------SEKNVRDIFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEI 804 (958)
Q Consensus 746 ~----------~~~--Ge--------se~~vr~lf~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~l 804 (958)
+ ... |. .++....+++... ...+.||+|||+|.+.... +.++.+|+...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~l~~~~ 156 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQLSRAR 156 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHhHhccc
Confidence 2 111 11 1222345555443 3456899999999997211 13556666542
Q ss_pred cCCCCCCCcEEEEEecCCCC---CCChhhcCcCCcc-ceeeccCCCCHHHHHHHHHHHHhhc-c--CCCCcCHHHHHhhC
Q 002159 805 DGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD-KLLYVGVNSDVSYRERVLKALTRKF-K--LLEDVSLYSIAKKC 877 (958)
Q Consensus 805 dg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd-~~I~v~~ppd~~~r~~Il~~~~~~~-~--~~~d~~l~~la~~~ 877 (958)
+.......++.+|+++|+++ .+++.+.+ ||. ..|+++ |++.++...|++...+.. . .-.+.-+..++..+
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~-p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 233 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFP-PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALA 233 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeC-CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHH
Confidence 21111235789999999987 47888877 785 678898 488999999999887631 1 11122233344432
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHH
Q 002159 878 --PPNFTGADMYALCADAWFHAAKR 900 (958)
Q Consensus 878 --t~g~sGaDi~~l~~~A~~~A~~r 900 (958)
+.|. .+....+|+.|+..|..+
T Consensus 234 ~~~~Gd-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 234 AQEHGD-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHhcCC-HHHHHHHHHHHHHHHHHc
Confidence 1232 234455788888777654
No 112
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.36 E-value=8.3e-12 Score=155.62 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=123.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---------ccchhchHHHHHHHHHHhhcCCCeEEeecchhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM---------ASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~---------s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~ 467 (958)
+..++|+||||||||++++++|+.++.+++.+++..+. ..+.|...+.+.+.|..+....| ++||||+|.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk 425 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDK 425 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhh
Confidence 34799999999999999999999999999999875432 23455667778888888876666 789999999
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchh-hhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK-EIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~-~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
+.+.. . .+ . ...|.++++.. .++.+... ........++++|+|||..+.+++++++|| .
T Consensus 426 ~~~~~--~---~~---~----~~aLl~~ld~~-------~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-~ 485 (775)
T TIGR00763 426 IGSSF--R---GD---P----ASALLEVLDPE-------QNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-E 485 (775)
T ss_pred cCCcc--C---CC---H----HHHHHHhcCHH-------hcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-e
Confidence 97521 0 01 1 12222322210 00101100 011122368999999999999999999999 5
Q ss_pred EEEcCCCCHHHHHHHHHHhccC-----Ccc--cCCCCCcHHHHHHHhhhcC-CCChhhHHHHHHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQP-----VSE--LTSDTGSEEFVKDIIGQTS-GFMPRDLHALVADAGANL 608 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~-----~~~--l~~D~~~~~~L~~la~~t~-Gfv~~DL~~Lv~eA~~~a 608 (958)
.+.++.|+..++.+|++.++.. ... ..... .++.+..+++.+. .+-.+++..++....+..
T Consensus 486 vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~-~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 486 VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKI-TDEALLLLIKYYTREAGVRNLERQIEKICRKA 554 (775)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEE-CHHHHHHHHHhcChhcCChHHHHHHHHHHHHH
Confidence 8999999999999999877621 111 00111 1344566665443 356667776665544443
No 113
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.3e-12 Score=148.34 Aligned_cols=165 Identities=28% Similarity=0.397 Sum_probs=125.9
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc------hhhh--
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELIN-- 746 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~------~l~~-- 746 (958)
.|--|++++|+++.+++...... .-.++.-++|+||||+|||+|++.||..++..|+.++-. |+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 35679999999998775322111 223456799999999999999999999999999988643 3333
Q ss_pred -ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC------------CCCCCc
Q 002159 747 -MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL------------NDSSQD 813 (958)
Q Consensus 747 -~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~------------~~~~~~ 813 (958)
.|+|.....+-+-+++|....| ++++||||++...- .||.. +.||.-||-- .-.-.+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~--rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF--RGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC--CCChH-------HHHHhhcCHhhcCchhhccccCccchhh
Confidence 3999999999999999999888 89999999998542 23332 3455555421 112347
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHH
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 859 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~ 859 (958)
|++|+|+|..+.|+.+|+. |+. +|.++= ...++..+|-+.|+
T Consensus 467 VmFiaTANsl~tIP~PLlD--RME-iI~lsg-Yt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLD--RME-VIRLSG-YTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhc--cee-eeeecC-CChHHHHHHHHHhc
Confidence 9999999999999999998 985 678874 78899999988775
No 114
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.35 E-value=4.7e-12 Score=131.70 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=94.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
.+++||||||+||||||+.+|++++.++..++++.+- ....+..++.... ...||||||||.+...
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~------ 116 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------KAGDLAAILTNLK--EGDILFIDEIHRLNKA------ 116 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHHHHHHHHT----TT-EEEECTCCC--HH------
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------hHHHHHHHHHhcC--CCcEEEEechhhccHH------
Confidence 4699999999999999999999999999988876432 1233334443332 4579999999988651
Q ss_pred CCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHH
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQ 557 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~q 557 (958)
+++.|-..++.... .-.-|.......-...-.++.+||||++...+++.+|.||.....+..++.++
T Consensus 117 ----------~qe~LlpamEd~~i---diiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~e 183 (233)
T PF05496_consen 117 ----------QQEILLPAMEDGKI---DIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEE 183 (233)
T ss_dssp ----------HHHHHHHHHHCSEE---EEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHH
T ss_pred ----------HHHHHHHHhccCeE---EEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHH
Confidence 22233333321100 00001111111111224678999999999999999999999989999999999
Q ss_pred HHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 558 RVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 558 R~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
...|++.-...... +.+ ++-...+|.++.|
T Consensus 184 l~~Iv~r~a~~l~i---~i~-~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 184 LAKIVKRSARILNI---EID-EDAAEEIARRSRG 213 (233)
T ss_dssp HHHHHHHCCHCTT----EE--HHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhCC---CcC-HHHHHHHHHhcCC
Confidence 99988865543222 222 3345667777766
No 115
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=3.4e-12 Score=146.15 Aligned_cols=192 Identities=18% Similarity=0.287 Sum_probs=124.1
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce---------------e
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF---------------L 737 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~---------------i 737 (958)
.|++|+|.+.+++.+...+..+..+...+ +.+.+..+||+||+|+|||++|+++|..+...- .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 48999999999999888875544332221 333467899999999999999999998764321 0
Q ss_pred eeccchhhhcc---ccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC
Q 002159 738 SVKGPELINMY---IGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 810 (958)
Q Consensus 738 ~v~~~~l~~~~---~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~ 810 (958)
.-+-+++.--. ..-.-..+|++++.+.. ....|+||||+|.+. ....|.||+.|+.. .
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------~~aanaLLk~LEep--~ 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------ERAANALLKAVEEP--P 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-------------HHHHHHHHHHhhcC--C
Confidence 00011110000 00112347888887754 334699999999985 23457888888854 2
Q ss_pred CCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHH
Q 002159 811 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 811 ~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~ 890 (958)
.+.+||+ +|+.++.|.|++++ |+ ..++|+. |+.+....+|. ++..+. ......++.. +.|..|.-+.-+.
T Consensus 146 ~~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~-~~~~~i~~~L~---~~~~~~-~~~a~~la~~-s~G~~~~A~~l~~ 215 (394)
T PRK07940 146 PRTVWLL-CAPSPEDVLPTIRS--RC-RHVALRT-PSVEAVAEVLV---RRDGVD-PETARRAARA-SQGHIGRARRLAT 215 (394)
T ss_pred CCCeEEE-EECChHHChHHHHh--hC-eEEECCC-CCHHHHHHHHH---HhcCCC-HHHHHHHHHH-cCCCHHHHHHHhc
Confidence 3345555 45559999999999 98 5888986 66666555554 222332 3345567777 5888887665554
Q ss_pred H
Q 002159 891 A 891 (958)
Q Consensus 891 ~ 891 (958)
.
T Consensus 216 ~ 216 (394)
T PRK07940 216 D 216 (394)
T ss_pred C
Confidence 4
No 116
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=1.4e-11 Score=143.37 Aligned_cols=178 Identities=25% Similarity=0.384 Sum_probs=115.5
Q ss_pred ccccccccccccccc---cceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 672 VKWEDVGGLEDVKKS---ILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 672 v~~~di~Gl~~vk~~---l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
.+++++.|.+.+... +...+ .. .....++|+|||||||||+|+++|..++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i----------~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~---- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMI----------EA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS---- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHH----------Hc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc----
Confidence 457788887776544 33322 11 123479999999999999999999999999998876432
Q ss_pred ccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC-C-
Q 002159 749 IGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN-R- 822 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN-r- 822 (958)
....++++++.+. .....||||||+|.+.. ...+.|+..++. +.+++|++|+ .
T Consensus 73 ---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~-----~~iilI~att~n~ 131 (413)
T PRK13342 73 ---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------------AQQDALLPHVED-----GTITLIGATTENP 131 (413)
T ss_pred ---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-------------HHHHHHHHHhhc-----CcEEEEEeCCCCh
Confidence 2345667777664 23568999999998752 234556666552 3566666653 3
Q ss_pred CCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc-----cCCCCcCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 823 PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-----KLLEDVSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 823 p~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~-----~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
...++++|++ |+ ..+.++. ++.++...+++..+... .+. +..+..+++.+ +-..+.+.+++..+
T Consensus 132 ~~~l~~aL~S--R~-~~~~~~~-ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s--~Gd~R~aln~Le~~ 200 (413)
T PRK13342 132 SFEVNPALLS--RA-QVFELKP-LSEEDIEQLLKRALEDKERGLVELD-DEALDALARLA--NGDARRALNLLELA 200 (413)
T ss_pred hhhccHHHhc--cc-eeeEeCC-CCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3478999999 99 5777874 67777888887766542 222 22245666653 22334444444443
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=2.4e-11 Score=140.57 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=124.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhh----------hccccc-------h-hhhHHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELI----------NMYIGE-------S-EKNVRDIFQKAR 764 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~----------~~~~Ge-------s-e~~vr~lf~~A~ 764 (958)
+..++++||||||||++++.++.++ +..++.+++.... ....+. + ++.+..+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999876 4667888765332 112221 1 122333333333
Q ss_pred h-cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCcc-ce
Q 002159 765 S-ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD-KL 839 (958)
Q Consensus 765 ~-~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd-~~ 839 (958)
. ..+.||+|||+|.+...++ ..++..|+..++... ..++.+|+++|.++ .+++.+.+ ||. ..
T Consensus 135 ~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 3568999999999972211 235667776666542 23788899988775 56777766 664 57
Q ss_pred eeccCCCCHHHHHHHHHHHHhhc---cCCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 002159 840 LYVGVNSDVSYRERVLKALTRKF---KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRI 914 (958)
Q Consensus 840 I~v~~ppd~~~r~~Il~~~~~~~---~~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~ 914 (958)
|+++ |++.++...|++...+.. ..-.+..++.+++.+ .+.+| +.+-.+|..|+..|..+..
T Consensus 202 i~f~-py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~-~~~~Gd~r~a~~ll~~a~~~a~~~~~------------ 267 (394)
T PRK00411 202 IYFP-PYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT-AREHGDARVAIDLLRRAGLIAEREGS------------ 267 (394)
T ss_pred eecC-CCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHcCC------------
Confidence 8888 488899999998877542 111233356666663 33333 3445778888777765421
Q ss_pred ccCCcccccHHHHHHHHHHhCC
Q 002159 915 DQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 915 ~~~~~~~i~~~df~~al~~~~p 936 (958)
..|+.+|+.+|+..+.+
T Consensus 268 -----~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 268 -----RKVTEEDVRKAYEKSEI 284 (394)
T ss_pred -----CCcCHHHHHHHHHHHHH
Confidence 13566666666665533
No 118
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.33 E-value=5.1e-12 Score=146.58 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=99.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----EEE--ecCcccccchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV----VEY--SCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~----~~I--~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
.|.+.+|..+.|+|.+||||||+++++-+-+.... ++| ++.++.+ .++... ...++..-+++|-|-
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~----l~~~~~----r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG----LSEREM----RKLRGKRIAMIFQDP 100 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc----CCHHHH----HHhccccEEEEecCc
Confidence 34445555599999999999999999999886552 333 3333332 222222 333445567778777
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhh-cc
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIR-RC 543 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alr-rr 543 (958)
+.++.+.. .+...+.+++..-.... ......+..... ..-+|++..+ ++
T Consensus 101 ~~slnP~~----------tIg~Qi~E~~~~h~~~~---------~~ea~~~a~elL-----------~~Vgl~~~~~~~~ 150 (539)
T COG1123 101 MTSLNPVM----------TIGDQIREALRLHGKGS---------RAEARKRAVELL-----------EQVGLPDPERRDR 150 (539)
T ss_pred hhhcCchh----------hHHHHHHHHHHHhcccc---------HHHHHHHHHHHH-----------HHcCCCChhhhcc
Confidence 77776521 12223333222111000 000001111111 1225555444 47
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHHHHH
Q 002159 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVADA 604 (958)
Q Consensus 544 f~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv~eA 604 (958)
+.|++|+| ++||+-|+.++..++.++..|+.+ -+.++++.++..- |++||+.-+..-|
T Consensus 151 yPheLSGG---~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 151 YPHQLSGG---MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA 222 (539)
T ss_pred CCcccCch---HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc
Confidence 99999999 999999999999999888666544 1233444433322 8999998765443
No 119
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.2e-11 Score=136.78 Aligned_cols=197 Identities=18% Similarity=0.247 Sum_probs=129.4
Q ss_pred CchHHHHHHHHHHhhcCCCccc----CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHH
Q 002159 371 LQGDTVKILASILAPTLCPSVL----SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALA 446 (958)
Q Consensus 371 l~~~~~k~L~~ii~p~l~p~~~----~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~ 446 (958)
.+.+..+.+.+.+.-++....+ +....+|.|||||||||||+++-|+|+.|+.+++-++..++.. ... |+
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr 278 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LR 278 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HH
Confidence 4456667777777666665555 5677799999999999999999999999999999887765322 222 77
Q ss_pred HHHHHhhcCCCeEEeecchhhhhhcccCCCCCCcccc-chH--HHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 447 QAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVG-LSS--EVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 447 ~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~-~~~--~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++-.+. ..+||+|++||.-...+.+......... ..+ -+..+|+ +++-+|. . .+..
T Consensus 279 ~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN-fiDGlwS----------s-------cg~E 338 (457)
T KOG0743|consen 279 HLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLN-FLDGLWS----------S-------CGDE 338 (457)
T ss_pred HHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhh-hhccccc----------c-------CCCc
Confidence 7776654 4589999999986543322221110000 001 1222332 2222211 1 1235
Q ss_pred EEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC--CChhhHHH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG--FMPRDLHA 599 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G--fv~~DL~~ 599 (958)
-|+|.|||..+.|||||.| |.+..|.+|.-+..+-..+++.++.-.. + ....+++.+.-.+ .+++|++.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~---h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----D---HRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----C---cchhHHHHHHhhcCccCHHHHHH
Confidence 6899999999999999999 8999999999999999999999885421 1 1122333333333 67777764
Q ss_pred H
Q 002159 600 L 600 (958)
Q Consensus 600 L 600 (958)
.
T Consensus 412 ~ 412 (457)
T KOG0743|consen 412 E 412 (457)
T ss_pred H
Confidence 3
No 120
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=1.2e-11 Score=141.72 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=129.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh-hccccchh-hhHHHHHHHH----HhcCCcEEEEcccccccC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGESE-KNVRDIFQKA----RSARPCVIFFDELDSLAP 781 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~-~~~~Gese-~~vr~lf~~A----~~~~P~ILfiDEiD~l~~ 781 (958)
..++||+||||||||++|+++|..++.+|..+++..+. ..|+|+.. ..+..+++.+ ....++||||||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 45899999999999999999999999999999888765 35888853 4455555432 345678999999999997
Q ss_pred CCCCCCCCcch-HHHHHHHHHHhhcCCCC----------CCCcEEEEEecCCC---------------------------
Q 002159 782 ARGASGDSGGV-MDRVVSQMLAEIDGLND----------SSQDLFIIGASNRP--------------------------- 823 (958)
Q Consensus 782 ~r~~~~~~~~~-~~rv~~~LL~~ldg~~~----------~~~~v~VI~aTNrp--------------------------- 823 (958)
++.+.+-...+ ...+.+.||+.|+|... ..++.++|.|+|-.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~ 275 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGA 275 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccc
Confidence 64322111111 13578888888887531 12356777777751
Q ss_pred C-----------------------CCChhhcCcCCccceeeccCCCCHHHHHHHHHH----HHhhc-------cCCC---
Q 002159 824 D-----------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA----LTRKF-------KLLE--- 866 (958)
Q Consensus 824 ~-----------------------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~----~~~~~-------~~~~--- 866 (958)
+ .+.|+++ ||+|.++++. |-+.+...+|+.. +.+.+ .+.-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~-pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t 352 (413)
T TIGR00382 276 EVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLE-KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFE 352 (413)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEC
Confidence 0 0224444 5999999996 3788888888865 23322 1111
Q ss_pred CcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 002159 867 DVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRK 901 (958)
Q Consensus 867 d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~ 901 (958)
+.-++.||+++ ...|-++-|+.++++..+.++-+.
T Consensus 353 ~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 353 EEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 12256788764 345556789999998887777654
No 121
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6.3e-12 Score=148.23 Aligned_cols=186 Identities=18% Similarity=0.248 Sum_probs=125.0
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC---------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--------------- 734 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--------------- 734 (958)
...+|+++.|.+.+++.|...+.. -+.+..+||+||+|+||||+|+++|+.+..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 345789999999999877665421 122456899999999999999999998865
Q ss_pred --------------ceeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHH
Q 002159 735 --------------NFLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRV 796 (958)
Q Consensus 735 --------------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv 796 (958)
.++.+++.. ..+-..+|++.+.+. .....|+||||+|.|. ...
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------~~A 140 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------NHA 140 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------HHH
Confidence 122222110 011244666666654 3345799999999885 345
Q ss_pred HHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHh
Q 002159 797 VSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAK 875 (958)
Q Consensus 797 ~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~ 875 (958)
.|.||+.|+.- ..++++|++||.++.|.+.+++ |+ ..+.|.. ++.+.-...|+..+.+..+..+ ..+..|++
T Consensus 141 aNALLKTLEEP---P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~-ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 141 FNAMLKTLEEP---PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHhhccC---CCCceEEEEeCChHhhhhHHHH--HH-HhcccCC-CChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 78899988753 4677888889999999999998 98 4667774 5566666666655544333222 23566777
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 002159 876 KCPPNFTGADMYALCADAW 894 (958)
Q Consensus 876 ~~t~g~sGaDi~~l~~~A~ 894 (958)
.+ +-+.+|..+++..+.
T Consensus 214 ~A--~Gs~RdALsLLdQai 230 (700)
T PRK12323 214 AA--QGSMRDALSLTDQAI 230 (700)
T ss_pred Hc--CCCHHHHHHHHHHHH
Confidence 63 456667767665543
No 122
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.9e-11 Score=143.20 Aligned_cols=170 Identities=18% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC---------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--------------- 734 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--------------- 734 (958)
.+.+|+++.|.+.+++.+...+. .+ +.+..++|+|||||||||+|+++|..++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~----------~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALK----------KN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 34578999999988776654331 11 23456899999999999999999998754
Q ss_pred ---------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 735 ---------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 735 ---------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
.++.++++. ...-..+|++.+.+.. ....|+||||+|.+. ....+.|+
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~~~LL 138 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAFNALL 138 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHHHHHH
Confidence 233333211 1112346666665543 234699999999885 23457788
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhh
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 876 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~ 876 (958)
..|+.. .+.+++|++|+.|+.+++++.+ |+. .+.+.. ++.+....+++...+...+. .+..+..|++.
T Consensus 139 k~LE~p---~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~-l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 139 KTLEEP---PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRN-ISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHhC---CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECC-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888754 3467777777788899999998 885 778874 67777777777776543321 23346777776
No 123
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.30 E-value=4.2e-11 Score=126.24 Aligned_cols=170 Identities=24% Similarity=0.445 Sum_probs=124.4
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 744 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l 744 (958)
....+.++++.|++..|+.+.+.. +.|-.|. +..++||+|+.|||||+++|++..++ |..++.|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt-------~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENT-------EQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHH-------HHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 345678999999999999885543 4455554 57899999999999999999999877 567888876655
Q ss_pred hhccccchhhhHHHHHHHHHh-cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-CCCCCCcEEEEEecCC
Q 002159 745 INMYIGESEKNVRDIFQKARS-ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-LNDSSQDLFIIGASNR 822 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~-~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-~~~~~~~v~VI~aTNr 822 (958)
..+.++++..+. ..+-|||+|++. +. .+ +.-...|-..||| +...+.||+|.+|+||
T Consensus 92 ---------~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-------~~---d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 ---------GDLPELLDLLRDRPYKFILFCDDLS--FE-------EG---DTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ---------ccHHHHHHHHhcCCCCEEEEecCCC--CC-------CC---cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 345566666553 345799999963 21 11 2234566666776 4456789999999999
Q ss_pred CCCCChhhc----------C-----------cCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC
Q 002159 823 PDLIDPALL----------R-----------PGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED 867 (958)
Q Consensus 823 p~~ldpaLl----------r-----------pgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d 867 (958)
-+++...+. . ..||.-+|.|. ||+.+.-.+|++.+.++..+.-+
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~-~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY-PPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec-CCCHHHHHHHHHHHHHHcCCCCC
Confidence 876654221 1 12999999999 49999999999999987765433
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.29 E-value=4.6e-11 Score=138.82 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=112.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchhh-hHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese~-~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
...++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+.+..+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3568999999999999999999987 5678888888876655443221 2222223333 357999999999874
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCccc--eeeccCCCCHHHHHHHHH
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd~--~I~v~~ppd~~~r~~Il~ 856 (958)
++. ....++..++.+.. .+..+||+++..|+. +++.+.+ ||.. .+.++. ||.+.|..|++
T Consensus 214 ~~~-----------~~~~l~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~-pd~~~r~~il~ 278 (405)
T TIGR00362 214 KER-----------TQEEFFHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEP-PDLETRLAILQ 278 (405)
T ss_pred CHH-----------HHHHHHHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCC-CCHHHHHHHHH
Confidence 321 11223333322211 123456655555654 5678887 9975 688884 99999999999
Q ss_pred HHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002159 857 ALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 857 ~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A 897 (958)
...+...+. ++.-++.||+++ .-+.++|..++......|
T Consensus 279 ~~~~~~~~~l~~e~l~~ia~~~--~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 279 KKAEEEGLELPDEVLEFIAKNI--RSNVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHcCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 988765432 333477888874 446788888777655444
No 125
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=3.7e-11 Score=143.43 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=125.1
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
...+|+++.|.+.+++.|...+. .-+....+||+||+|+||||+++++|+.++..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 34579999999999887765532 11224568999999999999999999988542
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.++... ...-..+|++.+.+.. ....|+||||+|.|. ....|.||
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-------------~~A~NALL 140 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-------------NHAFNAML 140 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------HHHHHHHH
Confidence 22222110 1112346677766542 345799999999885 24578888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
+.|+.. ..++.+|++||.++.|.+.+++ |+. .+.|.. ...+.-..+|+...++..+. ++..+..|++.+ .|
T Consensus 141 KtLEEP---P~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~-Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A-~G 212 (830)
T PRK07003 141 KTLEEP---PPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQ-MPAGHIVSHLERILGEERIAFEPQALRLLARAA-QG 212 (830)
T ss_pred HHHHhc---CCCeEEEEEECChhhccchhhh--heE-EEecCC-cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC
Confidence 888753 4578888888999999999998 994 566664 55666666666666544332 334467777774 33
Q ss_pred CCHHHHHHHHHHHH
Q 002159 881 FTGADMYALCADAW 894 (958)
Q Consensus 881 ~sGaDi~~l~~~A~ 894 (958)
+.+|..+++..|.
T Consensus 213 -smRdALsLLdQAi 225 (830)
T PRK07003 213 -SMRDALSLTDQAI 225 (830)
T ss_pred -CHHHHHHHHHHHH
Confidence 4566666665544
No 126
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=5e-11 Score=136.32 Aligned_cols=185 Identities=20% Similarity=0.242 Sum_probs=123.7
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
+.+|+++.|.+.+++.+...+. .+ +.+..++|+||+|+||||+|+++|..+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~----------~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLS----------LG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHH----------cC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3579999999998887755431 11 224458999999999999999999987532
Q ss_pred ---------eeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 736 ---------FLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 736 ---------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
++.+++.. ...-..++++.+.+.. ....|++|||+|.+. ....+.||+
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------~~a~naLLk 141 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------RHSFNALLK 141 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------HHHHHHHHH
Confidence 11111110 0122346666665542 234699999999874 235567888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~ 881 (958)
.|+.. ..++.+|++|+.++.+.+++.. |+ ..+.++. ++.++...+++...++.... ++..+..++..+ +-
T Consensus 142 ~lEe~---~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~-l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s--~G 212 (363)
T PRK14961 142 TLEEP---PQHIKFILATTDVEKIPKTILS--RC-LQFKLKI-ISEEKIFNFLKYILIKESIDTDEYALKLIAYHA--HG 212 (363)
T ss_pred HHhcC---CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CC
Confidence 87754 3466677777888889999987 88 4678884 77888888888877665432 233466777773 33
Q ss_pred CHHHHHHHHHHHH
Q 002159 882 TGADMYALCADAW 894 (958)
Q Consensus 882 sGaDi~~l~~~A~ 894 (958)
+.+++.+++..++
T Consensus 213 ~~R~al~~l~~~~ 225 (363)
T PRK14961 213 SMRDALNLLEHAI 225 (363)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666543
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.28 E-value=4.9e-11 Score=140.31 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=111.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchhhh-HHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKN-VRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese~~-vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..++||||+|+|||+|++++++++ +..++.+++.++.+.+.+..... ...+.+..+ .+.+|+|||+|.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 569999999999999999999987 45688888888876665443222 222222322 4679999999998643
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCccc--eeeccCCCCHHHHHHHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd~--~I~v~~ppd~~~r~~Il~~ 857 (958)
+. ....++..++.+... +..+||+++..|.. +++.|.. ||.. .+.+. ||+.+.|..|++.
T Consensus 227 ~~-----------~~~~l~~~~n~l~~~-~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~-~pd~~~r~~il~~ 291 (450)
T PRK00149 227 ER-----------TQEEFFHTFNALHEA-GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIE-PPDLETRIAILKK 291 (450)
T ss_pred HH-----------HHHHHHHHHHHHHHC-CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEec-CCCHHHHHHHHHH
Confidence 21 112233333322222 23355555555554 6788887 9964 67888 4999999999999
Q ss_pred HHhhc--cCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002159 858 LTRKF--KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 858 ~~~~~--~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A 897 (958)
..... .+.+ .-++.||+++ +=+.++|..++......|
T Consensus 292 ~~~~~~~~l~~-e~l~~ia~~~--~~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 292 KAEEEGIDLPD-EVLEFIAKNI--TSNVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHcCCCCCH-HHHHHHHcCc--CCCHHHHHHHHHHHHHHH
Confidence 88754 3433 3378888874 346677777766554443
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.27 E-value=2.3e-10 Score=138.74 Aligned_cols=224 Identities=24% Similarity=0.358 Sum_probs=132.6
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeec
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVK 740 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~ 740 (958)
..+++++.|.+...+.+...+. ...+..++|+|||||||||+|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 3467888887776665433221 1224579999999999999999998765 35688888
Q ss_pred cchhh-------hccccchhhh----HHHHHHH----------HHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHH
Q 002159 741 GPELI-------NMYIGESEKN----VRDIFQK----------ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQ 799 (958)
Q Consensus 741 ~~~l~-------~~~~Gese~~----vr~lf~~----------A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~ 799 (958)
+..+. +.++|..... .+..+.. .......+|||||++.+.. .....
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~ 284 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNK 284 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHH
Confidence 76541 1223321111 1111110 1122346999999987752 23344
Q ss_pred HHHhhcCCC-------------------------CCCCcEEEEE-ecCCCCCCChhhcCcCCccceeeccCCCCHHHHHH
Q 002159 800 MLAEIDGLN-------------------------DSSQDLFIIG-ASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRER 853 (958)
Q Consensus 800 LL~~ldg~~-------------------------~~~~~v~VI~-aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~ 853 (958)
|+..|+.-. ....++++|+ ||+.++.++++|++ ||.. ++++ |.+.++...
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~-i~~~-pls~edi~~ 360 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAE-VFFE-PLTPEDIAL 360 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeE-EEeC-CCCHHHHHH
Confidence 444443210 0112345554 55668899999988 9974 5666 477888999
Q ss_pred HHHHHHhhccCCC-CcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 854 VLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 854 Il~~~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
|++...++....- +.-+..|++.+ +.|....++..+|...+..+.....+ ......|+.+|++++++
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys---~~gRraln~L~~~~~~~~~~~~~~~~---------~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYT---IEGRKAVNILADVYGYALYRAAEAGK---------ENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCC---CcHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCeeECHHHHHHHhC
Confidence 9999887654321 22234454442 35666666666665555444321000 11235799999999998
Q ss_pred HhC
Q 002159 933 ELS 935 (958)
Q Consensus 933 ~~~ 935 (958)
.-+
T Consensus 429 ~~r 431 (615)
T TIGR02903 429 ISR 431 (615)
T ss_pred CCc
Confidence 654
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.26 E-value=3.3e-11 Score=136.13 Aligned_cols=144 Identities=27% Similarity=0.473 Sum_probs=110.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-cccc-chhhhHHHHHHHHH--------------------
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIG-ESEKNVRDIFQKAR-------------------- 764 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~G-ese~~vr~lf~~A~-------------------- 764 (958)
++.+|+|+||||||||++|+++|..++.+|+.++++++.. .|+| +.++.++.+|..|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3589999999999999999999999999999999988874 7888 56777888877760
Q ss_pred --------------------------------------------------------------------------------
Q 002159 765 -------------------------------------------------------------------------------- 764 (958)
Q Consensus 765 -------------------------------------------------------------------------------- 764 (958)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred ---------------------------------------hcCCcEEEEcccccccCCCCC-CCCCcchHHHHHHHHHHhh
Q 002159 765 ---------------------------------------SARPCVIFFDELDSLAPARGA-SGDSGGVMDRVVSQMLAEI 804 (958)
Q Consensus 765 ---------------------------------------~~~P~ILfiDEiD~l~~~r~~-~~~~~~~~~rv~~~LL~~l 804 (958)
...-.|+||||||+++.+.++ +.+.++ .-+...||..|
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~--eGVQ~~LLkil 283 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSR--EGVQRDLLPIV 283 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCc--cchhccccccc
Confidence 013359999999999976532 222222 35888999999
Q ss_pred cCCCC-------CCCcEEEEEecC----CCCCCChhhcCcCCccceeeccCCCCHHHHHHHH
Q 002159 805 DGLND-------SSQDLFIIGASN----RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 855 (958)
Q Consensus 805 dg~~~-------~~~~v~VI~aTN----rp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il 855 (958)
+|-.- ...++++|++.- .|+.|=|.|. |||..++.+.. .+.+....||
T Consensus 284 EGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~-L~~edL~rIL 342 (441)
T TIGR00390 284 EGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQA-LTTDDFERIL 342 (441)
T ss_pred cCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC-CCHHHHHHHh
Confidence 88321 235788887753 4666667776 59999999994 8888888887
No 130
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.26 E-value=3.4e-11 Score=133.01 Aligned_cols=119 Identities=22% Similarity=0.361 Sum_probs=93.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCC----CeEEeecchhhhhhcccC
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS----PTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~----P~IL~iDeid~L~~~~s~ 474 (958)
+++|+||||||||||+++||+.++.+|..++.. ....+.+++++++|+... ..|||+|||+.+-..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--- 119 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--- 119 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh---
Confidence 589999999999999999999999999999874 345677899999996443 489999999988651
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecC--CCCCCChhhhccccEEEEcCC
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD--SSEGLPPTIRRCFSHEISMGP 552 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn--~~~~Ld~alrrrf~~eIsig~ 552 (958)
+| ..+| -. ...+.+++||||+ ..-.+.+++++|. +.+.+.+
T Consensus 120 -----QQ-------D~lL-p~-----------------------vE~G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~ 162 (436)
T COG2256 120 -----QQ-------DALL-PH-----------------------VENGTIILIGATTENPSFELNPALLSRA-RVFELKP 162 (436)
T ss_pred -----hh-------hhhh-hh-----------------------hcCCeEEEEeccCCCCCeeecHHHhhhh-heeeeec
Confidence 11 1111 11 1278899999884 4568899999984 6778888
Q ss_pred CCHHHHHHHHHH
Q 002159 553 LTEQQRVEMLSQ 564 (958)
Q Consensus 553 Pde~qR~~Il~~ 564 (958)
.+.++-..+++.
T Consensus 163 L~~~di~~~l~r 174 (436)
T COG2256 163 LSSEDIKKLLKR 174 (436)
T ss_pred CCHHHHHHHHHH
Confidence 889988888877
No 131
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-10 Score=141.67 Aligned_cols=139 Identities=18% Similarity=0.260 Sum_probs=92.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--cchhchHHHHHHHHHHhh-cCCCeEEeecc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQ-SYSPTILLLRD 464 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s--~~~g~~e~~l~~~f~~A~-~~~P~IL~iDe 464 (958)
.+-+|+|.||+|||.++.-+|+.. +..++.++...+.+ ++-++.+..+..+..++. .....|+||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 456999999999999999999876 22455555544443 445778899999998887 44567889999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCChh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPT 539 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~a 539 (958)
++.+.....+ .+ .-....+|.... .++.+.+||||+.- ..-+|+
T Consensus 289 lh~lvg~g~~-------~~-~~d~~nlLkp~L-----------------------~rg~l~~IGatT~e~Y~k~iekdPa 337 (898)
T KOG1051|consen 289 LHWLVGSGSN-------YG-AIDAANLLKPLL-----------------------ARGGLWCIGATTLETYRKCIEKDPA 337 (898)
T ss_pred eeeeecCCCc-------ch-HHHHHHhhHHHH-----------------------hcCCeEEEecccHHHHHHHHhhCcc
Confidence 9988753211 11 112222332221 15558999998622 234788
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccC
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
+.++|. -+.+..|+...-..|+..+-.+
T Consensus 338 lErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 338 LERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred hhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 888884 4557777777767777766654
No 132
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3e-11 Score=139.57 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=116.4
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
+.+|+++.|.+.+...|...+. .+ +.+..++|+||+||||||+|+++|..++..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~----------~~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALK----------SG-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 4568999999988876654431 11 123458999999999999999999988652
Q ss_pred ---------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 736 ---------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 736 ---------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
|+.+++.. ...-..+|++.+.+. .....|+||||+|.+. ....+.||+
T Consensus 83 ~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-------------~~A~NALLK 143 (484)
T PRK14956 83 EITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-------------DQSFNALLK 143 (484)
T ss_pred HHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------HHHHHHHHH
Confidence 22222210 011234566655543 3345799999999885 346788888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~ 881 (958)
.|+. ...++++|++|+.++.|.+++++ |+.. +.+.. .+.+.-...++...++..+. .+..+..||+.. + =
T Consensus 144 tLEE---Pp~~viFILaTte~~kI~~TI~S--RCq~-~~f~~-ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S-~-G 214 (484)
T PRK14956 144 TLEE---PPAHIVFILATTEFHKIPETILS--RCQD-FIFKK-VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG-D-G 214 (484)
T ss_pred Hhhc---CCCceEEEeecCChhhccHHHHh--hhhe-eeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-C
Confidence 8875 34678888899999999999999 9964 45553 44455556666665543332 233355566552 2 2
Q ss_pred CHHHHHHHHH
Q 002159 882 TGADMYALCA 891 (958)
Q Consensus 882 sGaDi~~l~~ 891 (958)
+.+|.-+++.
T Consensus 215 d~RdAL~lLe 224 (484)
T PRK14956 215 SVRDMLSFME 224 (484)
T ss_pred hHHHHHHHHH
Confidence 3344444443
No 133
>PRK04195 replication factor C large subunit; Provisional
Probab=99.25 E-value=3.5e-11 Score=142.65 Aligned_cols=190 Identities=25% Similarity=0.321 Sum_probs=127.4
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
..+.+++++.|.+.+++.+.+.+.. +..| .++..++|+||||||||++|+++|++++.+++.+++++..+.
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~-------~~~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIES-------WLKG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHH-------HhcC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 3445688899999888877665421 1112 236789999999999999999999999999999988764321
Q ss_pred ccchhhhHHHHHHHHHh------cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 749 IGESEKNVRDIFQKARS------ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~------~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
..++.+...+.. ..+.||+|||+|.+.... + ...++.|+..++.. +..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d-----~~~~~aL~~~l~~~-----~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----D-----RGGARAILELIKKA-----KQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----c-----hhHHHHHHHHHHcC-----CCCEEEeccC
Confidence 233333333322 256799999999987421 1 12345566666521 2345667888
Q ss_pred CCCCCh-hhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002159 823 PDLIDP-ALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWF 895 (958)
Q Consensus 823 p~~ldp-aLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~ 895 (958)
+..+++ .|.+ |+ ..|.|+. ++......+++...++..+. .+..+..|++. +++|++.+++....
T Consensus 140 ~~~~~~k~Lrs--r~-~~I~f~~-~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~-----s~GDlR~ain~Lq~ 205 (482)
T PRK04195 140 PYDPSLRELRN--AC-LMIEFKR-LSTRSIVPVLKRICRKEGIECDDEALKEIAER-----SGGDLRSAINDLQA 205 (482)
T ss_pred ccccchhhHhc--cc-eEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 888887 5554 44 5788885 77888888888877654432 23346777777 35688888776544
No 134
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.24 E-value=1.1e-11 Score=151.84 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=47.6
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
.+...++|+| +++|+.|++.++.+++++ ++|.....|+.++.....+ ++.||+.++..
T Consensus 151 ~~~~~~LSgG---ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 151 DAALSSLSGG---WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN 218 (635)
T ss_pred CCchhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 3455789999 999999999999998877 4455557899999888766 88999998863
No 135
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.24 E-value=6.4e-11 Score=133.93 Aligned_cols=189 Identities=21% Similarity=0.266 Sum_probs=116.9
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC-----Cceeeeccchhh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELI 745 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~-----~~~i~v~~~~l~ 745 (958)
+..|+++.|.+.+++.+...+. .+ ...+++|+||||||||++|++++.++. .+++.+++.++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~----------~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVD----------SP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHh----------CC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3457888888887776655431 11 123699999999999999999999873 356777776653
Q ss_pred hcc-------------ccc-------hhhhHHHHHHHHHh-----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHH
Q 002159 746 NMY-------------IGE-------SEKNVRDIFQKARS-----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQM 800 (958)
Q Consensus 746 ~~~-------------~Ge-------se~~vr~lf~~A~~-----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~L 800 (958)
..+ .+. ....++.+.+.... ..+.+|+|||+|.+.. ...+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------------~~~~~L 145 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------------DAQQAL 145 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------------HHHHHH
Confidence 221 111 01223333333322 2346999999997741 223455
Q ss_pred HHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCC
Q 002159 801 LAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPP 879 (958)
Q Consensus 801 L~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~ 879 (958)
...|+... ....+|.+|+.+..+.+.|.+ |+ ..+.+.. ++.++...+++...++..+. ++..+..++..
T Consensus 146 ~~~le~~~---~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~-~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~--- 215 (337)
T PRK12402 146 RRIMEQYS---RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRA-PTDDELVDVLESIAEAEGVDYDDDGLELIAYY--- 215 (337)
T ss_pred HHHHHhcc---CCCeEEEEeCChhhCchhhcC--Cc-eEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Confidence 55565442 223345566667777788877 76 4577774 77788888888877655432 23345666665
Q ss_pred CCCHHHHHHHHHHHHHH
Q 002159 880 NFTGADMYALCADAWFH 896 (958)
Q Consensus 880 g~sGaDi~~l~~~A~~~ 896 (958)
+++|++.+++.....
T Consensus 216 --~~gdlr~l~~~l~~~ 230 (337)
T PRK12402 216 --AGGDLRKAILTLQTA 230 (337)
T ss_pred --cCCCHHHHHHHHHHH
Confidence 356777776654443
No 136
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.23 E-value=2.3e-10 Score=129.28 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=114.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCC
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNE 475 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~ 475 (958)
...+++|+||||+|||++++++|++++..+..++++.+. ....+...+... ..+.++||||+|.+...
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~---- 117 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPV---- 117 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchH----
Confidence 345799999999999999999999999988777765422 223344444433 35789999999988541
Q ss_pred CCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCH
Q 002159 476 SLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTE 555 (958)
Q Consensus 476 ~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde 555 (958)
..+.+...++......... .+.... .. .....++.+|++|++...+++.+++||...+.++.|+.
T Consensus 118 --------~~e~l~~~~e~~~~~~~l~-----~~~~~~-~~-~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~ 182 (328)
T PRK00080 118 --------VEEILYPAMEDFRLDIMIG-----KGPAAR-SI-RLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTV 182 (328)
T ss_pred --------HHHHHHHHHHhcceeeeec-----cCcccc-ce-eecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCH
Confidence 1112222232221100000 000000 00 01124588999999999999999999988999999999
Q ss_pred HHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 556 QQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 556 ~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
.++.+|++........ ..+ ++.+..++..+.|.. +.+..+++.
T Consensus 183 ~e~~~il~~~~~~~~~---~~~-~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 183 EELEKIVKRSARILGV---EID-EEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred HHHHHHHHHHHHHcCC---CcC-HHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 9999999988765432 222 345788888888854 444444443
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.23 E-value=5.9e-11 Score=125.53 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=112.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
..+|||||||.||||||+.+|+++|..+-..+++-+ +..+.+..++...+ ..-|+||||||.+.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------eK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~------ 118 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLE--EGDVLFIDEIHRLSPA------ 118 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------cChhhHHHHHhcCC--cCCeEEEehhhhcChh------
Confidence 469999999999999999999999999988888753 33445555555443 3479999999999762
Q ss_pred CCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHH
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQ 557 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~q 557 (958)
..+-+..+++.+.-.... |.-.....-...-.++-+||||++.-.+...+|.||.....+..++.++
T Consensus 119 ------vEE~LYpaMEDf~lDI~I-------G~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~e 185 (332)
T COG2255 119 ------VEEVLYPAMEDFRLDIII-------GKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEE 185 (332)
T ss_pred ------HHHHhhhhhhheeEEEEE-------ccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHH
Confidence 122233333333211100 1011111112225688999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 558 RVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 558 R~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
..+|++.-...... +.+ ++-...+|+++.|
T Consensus 186 L~~Iv~r~a~~l~i---~i~-~~~a~eIA~rSRG 215 (332)
T COG2255 186 LEEIVKRSAKILGI---EID-EEAALEIARRSRG 215 (332)
T ss_pred HHHHHHHHHHHhCC---CCC-hHHHHHHHHhccC
Confidence 99998876643332 333 2234667877777
No 138
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=3.5e-11 Score=136.00 Aligned_cols=173 Identities=24% Similarity=0.417 Sum_probs=122.5
Q ss_pred cccccccccccceeeeccccchhhhhcCC---CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-cccc-c
Q 002159 677 VGGLEDVKKSILDTVQLPLLHKDLFSSGL---RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIG-E 751 (958)
Q Consensus 677 i~Gl~~vk~~l~e~i~~~l~~~~~~~~~i---~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~G-e 751 (958)
+.|++..|+.+..++........+ ..+. ..+.+++|+||||||||++|++||..++.+|+.++++++.. .|+| .
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l-~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQL-PEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-CcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 667777777665444211111000 0011 12578999999999999999999999999999999998885 6999 5
Q ss_pred hhhhHHHHHHHHH-------------------------------------------------------------------
Q 002159 752 SEKNVRDIFQKAR------------------------------------------------------------------- 764 (958)
Q Consensus 752 se~~vr~lf~~A~------------------------------------------------------------------- 764 (958)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5777888887771
Q ss_pred ---h--------------------------------------------------------------------cCCcEEEE
Q 002159 765 ---S--------------------------------------------------------------------ARPCVIFF 773 (958)
Q Consensus 765 ---~--------------------------------------------------------------------~~P~ILfi 773 (958)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCC-------CCCcEEEEEec----CCCCCCChhhcCcCCccceee
Q 002159 774 DELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLND-------SSQDLFIIGAS----NRPDLIDPALLRPGRFDKLLY 841 (958)
Q Consensus 774 DEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~-------~~~~v~VI~aT----Nrp~~ldpaLlrpgRfd~~I~ 841 (958)
||||+++.+.+++ .+.++ .-+...||..|+|-.- ...++++|++- ..|+.|-|.|.- ||..++.
T Consensus 256 DEiDKIa~~~~~~~~DvS~--eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSR--EGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCCCCCc--cchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 9999999765321 12222 3588899999998321 23578888765 356667788874 9999999
Q ss_pred ccCCCCHHHHHHHH
Q 002159 842 VGVNSDVSYRERVL 855 (958)
Q Consensus 842 v~~ppd~~~r~~Il 855 (958)
+. |.+.+...+||
T Consensus 332 L~-~L~~~dL~~IL 344 (443)
T PRK05201 332 LD-ALTEEDFVRIL 344 (443)
T ss_pred CC-CCCHHHHHHHh
Confidence 98 48888888887
No 139
>PLN03025 replication factor C subunit; Provisional
Probab=99.21 E-value=5e-11 Score=134.06 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=113.7
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC-----Cceeeeccchh
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPEL 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~-----~~~i~v~~~~l 744 (958)
.+.+++++.|.+++...+...+ .. ....+++|+||||||||++|+++|.++. ..++.++.++.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~----------~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIA----------RD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHH----------hc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 3456888888888777664432 11 1123699999999999999999999872 34566665443
Q ss_pred hhccccchhhhHHHHHHHH-H------hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEE
Q 002159 745 INMYIGESEKNVRDIFQKA-R------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFII 817 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A-~------~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI 817 (958)
.+ -..+++..+.. . ...+.|++|||+|.+.. ...+.|+..|+... ....+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-------------~aq~aL~~~lE~~~---~~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-------------GAQQALRRTMEIYS---NTTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-------------HHHHHHHHHHhccc---CCceEE
Confidence 21 11233333221 1 12457999999999862 22455566665432 334466
Q ss_pred EecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 818 GASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 818 ~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
.+||.++.+.++|++ |+. .+.++. ++.++...+++...++..+. .+..+..++..+ ++|++.+.+.
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~-l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~-----~gDlR~aln~ 200 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSR-LSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTA-----DGDMRQALNN 200 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHH
Confidence 678888888899988 874 678885 66777777777766543321 233467777763 4566665543
No 140
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.1e-10 Score=138.12 Aligned_cols=191 Identities=19% Similarity=0.218 Sum_probs=121.1
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCcee-e------e-c-
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL-S------V-K- 740 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i-~------v-~- 740 (958)
.+.+|+++.|.+.+++.|...+. .+ +.+..+||+||+||||||+|+++|..++..-. . . .
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~----------~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALT----------QQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----------hC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 34579999999999887755431 11 22445799999999999999999998865310 0 0 0
Q ss_pred -------cchhhhccccc---hhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC
Q 002159 741 -------GPELINMYIGE---SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 806 (958)
Q Consensus 741 -------~~~l~~~~~Ge---se~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg 806 (958)
..+++. +-+. .-..+|++.+.+. .....|+||||+|.|. ....+.||+.|+.
T Consensus 80 ~~i~~g~~~DviE-idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqNALLKtLEE 145 (944)
T PRK14949 80 VEIAQGRFVDLIE-VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFNALLKTLEE 145 (944)
T ss_pred HHHhcCCCceEEE-eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHHHHHHHHhc
Confidence 000100 0011 1234566665543 2345699999999985 3567889998885
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHH
Q 002159 807 LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGAD 885 (958)
Q Consensus 807 ~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaD 885 (958)
. ..++.+|++|+.+..|.+.++. |+ ..+.|.. ...++-...|+...+...+. .+..+..|++.+ +=+.++
T Consensus 146 P---P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkp-Ls~eEI~~~L~~il~~EgI~~edeAL~lIA~~S--~Gd~R~ 216 (944)
T PRK14949 146 P---PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKS-LTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA--NGSMRD 216 (944)
T ss_pred c---CCCeEEEEECCCchhchHHHHH--hh-eEEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHH
Confidence 4 4567777778888889899988 88 4566664 55555555555555443322 222356677663 335567
Q ss_pred HHHHHHHHH
Q 002159 886 MYALCADAW 894 (958)
Q Consensus 886 i~~l~~~A~ 894 (958)
+-++|..|.
T Consensus 217 ALnLLdQal 225 (944)
T PRK14949 217 ALSLTDQAI 225 (944)
T ss_pred HHHHHHHHH
Confidence 777776554
No 141
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.18 E-value=8.4e-10 Score=123.29 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=112.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~ 476 (958)
..+++|+||||||||++++++|++++..+..+++..+.. ...+...+... ..+.++||||++.+.+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~----- 96 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPA----- 96 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHH-----
Confidence 346999999999999999999999998877666543211 12233333322 35689999999988651
Q ss_pred CCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHH
Q 002159 477 LPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQ 556 (958)
Q Consensus 477 ~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~ 556 (958)
....+..++++........ .++... .......++.+|++||++..+++++++||...+.++.|+..
T Consensus 97 -------~~e~l~~~~~~~~~~~v~~-----~~~~~~--~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 97 -------VEELLYPAMEDFRLDIVIG-----KGPSAR--SVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred -------HHHHhhHHHhhhheeeeec-----cCcccc--ceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHH
Confidence 1112222222221110000 000000 00112346899999999999999999999888999999999
Q ss_pred HHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 557 QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 557 qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
++.++++........ ..+ ++.++.++..+.|.. +.+..++..+
T Consensus 163 e~~~il~~~~~~~~~---~~~-~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 163 ELAEIVSRSAGLLNV---EIE-PEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred HHHHHHHHHHHHhCC---CcC-HHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 999999987754322 222 445678888888854 4445555543
No 142
>PRK06893 DNA replication initiation factor; Validated
Probab=99.18 E-value=2.4e-10 Score=122.39 Aligned_cols=158 Identities=13% Similarity=0.197 Sum_probs=96.5
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 785 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~ 785 (958)
..++||||||||||+|+.++|+++ +.....+...+. .....++++..+ ...+|+|||++.+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 357999999999999999999886 233333333211 111123344333 447999999999864321
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC---hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh-
Q 002159 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID---PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK- 861 (958)
Q Consensus 786 ~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld---paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~- 861 (958)
....+..++..+. ...+.++|++++..|..++ |.|.+..++...+.++. |+.+.|..|++.....
T Consensus 109 -------~~~~l~~l~n~~~---~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~-pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 109 -------WELAIFDLFNRIK---EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND-LTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHHHHHHHHHHH---HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC-CCHHHHHHHHHHHHHHc
Confidence 1223334444332 2223455666666677554 88888344467888885 8999999999876653
Q ss_pred -ccCCCCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 862 -FKLLEDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 862 -~~~~~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
+.+.+ .-+..|++++ +=+.+.+.+++.
T Consensus 178 ~l~l~~-~v~~~L~~~~--~~d~r~l~~~l~ 205 (229)
T PRK06893 178 GIELSD-EVANFLLKRL--DRDMHTLFDALD 205 (229)
T ss_pred CCCCCH-HHHHHHHHhc--cCCHHHHHHHHH
Confidence 44433 3367888884 234445555444
No 143
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.18 E-value=1.1e-10 Score=130.99 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=103.7
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
..+.+++++.|.+.+++.+...+. .+ ..+..++|+||||+|||++|++++.+.+.+++.+++.+ ..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVK----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHh----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 334567888888888777655432 11 12345666999999999999999999998998888765 11
Q ss_pred ccchhhhHHHHHHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
.......+........ ...+.||+|||+|.+.. ....+.|...|+.. ..++.+|++||.++.++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~~L~~~le~~---~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------ADAQRHLRSFMEAY---SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------HHHHHHHHHHHHhc---CCCceEEEEcCChhhch
Confidence 1111111222111111 13578999999998731 11223333345543 24567888999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHh
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 860 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~ 860 (958)
+++++ ||. .+.++. |+.+.+..|++.+.+
T Consensus 146 ~~l~s--R~~-~i~~~~-p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRS--RCR-VIDFGV-PTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHh--hce-EEEeCC-CCHHHHHHHHHHHHH
Confidence 99998 996 678876 677788777765443
No 144
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.2e-10 Score=134.26 Aligned_cols=149 Identities=21% Similarity=0.324 Sum_probs=107.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---------ccchhchHHHHHHHHHHhhcCCCeEEeecchhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM---------ASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~---------s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
.-++|+||||+|||+|++.||..+|..|+.++...+- ..|.|...+++-|.+..|....| +++|||||.+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm 429 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM 429 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence 4589999999999999999999999999999864332 24678888899999999987666 5569999998
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEE
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eI 548 (958)
... -.| .=.++|-+.++.-.+.... +.| ++. ..--.+|+||||+|..+.+|..|+.|. ..|
T Consensus 430 ~ss--~rG----------DPaSALLEVLDPEQN~~F~--DhY-Lev---~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI 490 (782)
T COG0466 430 GSS--FRG----------DPASALLEVLDPEQNNTFS--DHY-LEV---PYDLSKVMFIATANSLDTIPAPLLDRM-EVI 490 (782)
T ss_pred cCC--CCC----------ChHHHHHhhcCHhhcCchh--hcc-ccC---ccchhheEEEeecCccccCChHHhcce-eee
Confidence 752 111 1122222333321111110 111 111 111467999999999999999999996 678
Q ss_pred EcCCCCHHHHHHHHHHhc
Q 002159 549 SMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll 566 (958)
.+..+++.+.++|++.|+
T Consensus 491 ~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 491 RLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCCChHHHHHHHHHhc
Confidence 999999999999999887
No 145
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1.7e-10 Score=135.84 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=132.0
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeec--------
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK-------- 740 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~-------- 740 (958)
..+.+|+++.|.+.+.+.+...+ ..+ +.+..+||+||+||||||+|+++|..++...-...
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai----------~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTI----------LND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHH----------HcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 34557899999998887665432 111 23567999999999999999999998864211000
Q ss_pred ----c--------chhhhcc--ccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 741 ----G--------PELINMY--IGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 741 ----~--------~~l~~~~--~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
+ +++...- ...+...++++++.+... ...|++|||+|.+. ....+.|++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------~~a~naLLk 150 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------KGAFNALLK 150 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-------------HHHHHHHHH
Confidence 0 1111000 011234678888777533 34699999999884 245778888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~ 881 (958)
.|+.. ...+++|++|+.++.+.+++++ |+ ..+.+.. ++.++...+++...++....- +..+..|++.+ . -
T Consensus 151 ~LEep---p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~-ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-~-G 221 (507)
T PRK06645 151 TLEEP---PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRR-LSFEEIFKLLEYITKQENLKTDIEALRIIAYKS-E-G 221 (507)
T ss_pred HHhhc---CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-C
Confidence 88753 4567777778888999999988 88 4677874 778888888888887655432 23467788873 4 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 002159 882 TGADMYALCADAWFHA 897 (958)
Q Consensus 882 sGaDi~~l~~~A~~~A 897 (958)
+.+++.+++..|...+
T Consensus 222 slR~al~~Ldkai~~~ 237 (507)
T PRK06645 222 SARDAVSILDQAASMS 237 (507)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 7788877777765443
No 146
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-10 Score=138.20 Aligned_cols=185 Identities=17% Similarity=0.280 Sum_probs=123.5
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC----------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------------- 734 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---------------- 734 (958)
+.+|+++.|.+.+++.|...+. .+ +.+..+||+||+|+||||+|+++|+.++.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~----------~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALE----------RG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4579999999999887765542 11 23467899999999999999999998764
Q ss_pred --------ceeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 735 --------NFLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 735 --------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
.++.++++.- .+-..+|++...+. ..+..|++|||+|.|. ....+.|++
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-------------~~A~NALLK 140 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-------------THSFNALLK 140 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------HHHHHHHHH
Confidence 2333333210 12235666666553 2345799999999885 235678888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~ 881 (958)
.|+.. ...+.+|++|+.+..+.+.+++ |+. .+.+.. .+.++-..+++..+++..+. .+..+..||+.+ +-
T Consensus 141 tLEEP---P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkp-Ls~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S--~G 211 (702)
T PRK14960 141 TLEEP---PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRP-LAVDEITKHLGAILEKEQIAADQDAIWQIAESA--QG 211 (702)
T ss_pred HHhcC---CCCcEEEEEECChHhhhHHHHH--hhh-eeeccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CC
Confidence 88854 3566777778888888888887 884 566663 56666666666666554332 233467778773 34
Q ss_pred CHHHHHHHHHHHH
Q 002159 882 TGADMYALCADAW 894 (958)
Q Consensus 882 sGaDi~~l~~~A~ 894 (958)
+.+++.+++..+.
T Consensus 212 dLRdALnLLDQaI 224 (702)
T PRK14960 212 SLRDALSLTDQAI 224 (702)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665543
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=5.3e-10 Score=132.61 Aligned_cols=167 Identities=18% Similarity=0.230 Sum_probs=109.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 783 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r 783 (958)
..++|||++|+|||+|+++|++++ +..+++++..++.+.+.........+.|.+- -..+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 349999999999999999999986 4678899998888776554333322334432 2346899999999997432
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC----CCCChhhcCcCCccce--eeccCCCCHHHHHHHHHH
Q 002159 784 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP----DLIDPALLRPGRFDKL--LYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 784 ~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp----~~ldpaLlrpgRfd~~--I~v~~ppd~~~r~~Il~~ 857 (958)
. ..+.+-.+++.+. .. +.- ||.|+|++ ..+++.|.+ ||..- +.+. +||.+.|..||+.
T Consensus 394 ~--------tqeeLF~l~N~l~---e~-gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~-~PD~EtR~aIL~k 457 (617)
T PRK14086 394 S--------TQEEFFHTFNTLH---NA-NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQ-PPELETRIAILRK 457 (617)
T ss_pred H--------HHHHHHHHHHHHH---hc-CCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcC-CCCHHHHHHHHHH
Confidence 1 1222233444333 11 222 34466664 357888988 99654 4666 4899999999998
Q ss_pred HHhhccCCC-CcCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002159 858 LTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAW 894 (958)
Q Consensus 858 ~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~~l~~~A~ 894 (958)
..+...+.- +.-++.|+.++ .=+-++|..++..-.
T Consensus 458 ka~~r~l~l~~eVi~yLa~r~--~rnvR~LegaL~rL~ 493 (617)
T PRK14086 458 KAVQEQLNAPPEVLEFIASRI--SRNIRELEGALIRVT 493 (617)
T ss_pred HHHhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHH
Confidence 887554332 22367788874 235567776666543
No 148
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=2.1e-10 Score=137.65 Aligned_cols=184 Identities=18% Similarity=0.293 Sum_probs=122.1
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
..+|+++.|.+.+++.|...+. .+ +.+..+||+||+|+||||+|+++|..++..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~----------~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALD----------LG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 3578999999999887755431 11 224457999999999999999999988652
Q ss_pred ---------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 736 ---------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 736 ---------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
++.+++.. . ..-..+|++.+.+. .....|+||||+|.|. ....|.||+
T Consensus 81 ~i~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-------------~~a~NALLK 141 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLK 141 (647)
T ss_pred HHHcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------HHHHHHHHH
Confidence 22222211 0 11234666655543 2345799999999885 346788999
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~ 881 (958)
.|+.- .+++.+|++|+.++.|.+.+++ |+ ..++|.. ++.+.-...|+...+...+. .+..+..|+..+ +-
T Consensus 142 tLEEP---p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~-Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s--~G 212 (647)
T PRK07994 142 TLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRQQLEHILQAEQIPFEPRALQLLARAA--DG 212 (647)
T ss_pred HHHcC---CCCeEEEEecCCccccchHHHh--hh-eEeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CC
Confidence 88853 4577777788889999999998 97 5677774 56666666666665543332 223356677663 44
Q ss_pred CHHHHHHHHHHH
Q 002159 882 TGADMYALCADA 893 (958)
Q Consensus 882 sGaDi~~l~~~A 893 (958)
+.++..+++..|
T Consensus 213 s~R~Al~lldqa 224 (647)
T PRK07994 213 SMRDALSLTDQA 224 (647)
T ss_pred CHHHHHHHHHHH
Confidence 556666666543
No 149
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.16 E-value=2.5e-10 Score=130.11 Aligned_cols=186 Identities=22% Similarity=0.324 Sum_probs=124.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
.+..|+++.|.+.+++.+.+.+. .+ +.+..+|||||||+|||++|++++..+...
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~----------~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIK----------NG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 44679999999998887765431 11 224568999999999999999999887432
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++.. ......++++++.+... ...|++|||+|.+. ....+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-------------~~~~~~Ll 138 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-------------KSAFNALL 138 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------HHHHHHHH
Confidence 22222210 11223577787776532 23599999998874 23567888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
..++.. ..++++|++||.++.+.+++.+ |+. .+.++ |++.++...+++...++..+. ++..+..+++.+ |
T Consensus 139 ~~le~~---~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~-~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~--~ 209 (355)
T TIGR02397 139 KTLEEP---PEHVVFILATTEPHKIPATILS--RCQ-RFDFK-RIPLEDIVERLKKILDKEGIKIEDEALELIARAA--D 209 (355)
T ss_pred HHHhCC---ccceeEEEEeCCHHHHHHHHHh--hee-EEEcC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 888754 3467777788889988899988 884 67887 477888888888877765432 223356667763 3
Q ss_pred CCHHHHHHHHHHHH
Q 002159 881 FTGADMYALCADAW 894 (958)
Q Consensus 881 ~sGaDi~~l~~~A~ 894 (958)
.+.+.+.+.+..+.
T Consensus 210 g~~~~a~~~lekl~ 223 (355)
T TIGR02397 210 GSLRDALSLLDQLI 223 (355)
T ss_pred CChHHHHHHHHHHH
Confidence 35555555554433
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=8.6e-10 Score=128.70 Aligned_cols=192 Identities=14% Similarity=0.207 Sum_probs=114.9
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 785 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~ 785 (958)
..++||||+|+|||+|++++++++ +..++.++..++...+...-...-.+.|.... ..+.+|+|||++.+.++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 57888888877665443322111112344322 3567999999999864321
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCcc--ceeeccCCCCHHHHHHHHHHHHh
Q 002159 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKALTR 860 (958)
Q Consensus 786 ~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~~~~ 860 (958)
..+.+-.++..+. . .+..+|+++++.|. .+++.|.+ ||. ..+.+. ||+.+.|..|++...+
T Consensus 220 -------~qeelf~l~N~l~---~-~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~-~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 220 -------TQEEFFHTFNSLH---T-EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLH-PLTKEGLRSFLERKAE 285 (445)
T ss_pred -------hHHHHHHHHHHHH---H-CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecC-CCCHHHHHHHHHHHHH
Confidence 1122222332221 1 12334444444454 56789988 996 566676 4889999999998877
Q ss_pred hccCCC-CcCHHHHHhhCCCCCCHHHHHHHHHHHHHH-HHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 861 KFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFH-AAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 861 ~~~~~~-d~~l~~la~~~t~g~sGaDi~~l~~~A~~~-A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
...+.- +.-++.||.+. .-..++|...+...+.. |..+. ...+++.++..++++.+
T Consensus 286 ~~~~~l~~evl~~la~~~--~~dir~L~g~l~~l~~~~a~~~~----------------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 286 ALSIRIEETALDFLIEAL--SSNVKSLLHALTLLAKRVAYKKL----------------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HcCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHh----------------hCCCCCHHHHHHHHHHh
Confidence 654322 22356677774 22445555555544322 22221 11246777777777654
No 151
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.14 E-value=3.4e-10 Score=138.49 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=112.0
Q ss_pred ccccccccccccccc---cceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 672 VKWEDVGGLEDVKKS---ILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 672 v~~~di~Gl~~vk~~---l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
.+++++.|.+.+... +... +. -....+++|||||||||||+|+++++.++.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~----------i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~---- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRA----------IK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA---- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHH----------Hh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh----
Confidence 457778887765432 2111 11 1223579999999999999999999999999988876421
Q ss_pred ccchhhhHHHHHHHHH-----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC-
Q 002159 749 IGESEKNVRDIFQKAR-----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR- 822 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~-----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr- 822 (958)
| .+.+++++..+. .....+|||||+|.+.. ...+.|+..++. +.+++|++|+.
T Consensus 89 -~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE~-----g~IiLI~aTTen 147 (725)
T PRK13341 89 -G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------------AQQDALLPWVEN-----GTITLIGATTEN 147 (725)
T ss_pred -h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------------HHHHHHHHHhcC-----ceEEEEEecCCC
Confidence 1 123444444442 13457999999998852 123455555542 45667766543
Q ss_pred C-CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh-------ccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 823 P-DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK-------FKLL-EDVSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 823 p-~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~-------~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
| ..+++++++ |+ ..+.++. ++.+....|++..+.. ..+. ++.-+..|++.+ +-..+++.++++.|
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~p-Ls~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a 221 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKS-LSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELA 221 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCC-CCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3 468899998 75 4678884 7888899998887762 1111 122356666663 22345555555544
Q ss_pred H
Q 002159 894 W 894 (958)
Q Consensus 894 ~ 894 (958)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 3
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.14 E-value=3.3e-10 Score=123.77 Aligned_cols=135 Identities=25% Similarity=0.360 Sum_probs=92.5
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc------hhhhccccchhhhHH---------------------H
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELINMYIGESEKNVR---------------------D 758 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~------~l~~~~~Gese~~vr---------------------~ 758 (958)
..+..++|+||||||||++|+++|..++.+|+.+++. ++++.|.|.....+. .
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR 98 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch
Confidence 3467899999999999999999999999999988653 444444433222111 1
Q ss_pred HHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC----C---------CCCcEEEEEecCCCC-
Q 002159 759 IFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----D---------SSQDLFIIGASNRPD- 824 (958)
Q Consensus 759 lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----~---------~~~~v~VI~aTNrp~- 824 (958)
++..++ ...+|+|||++.+. ..+.+.|+..|+.-. . ...++.||+|+|...
T Consensus 99 l~~A~~--~g~~lllDEi~r~~-------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 99 LTLAVR--EGFTLVYDEFTRSK-------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred HHHHHH--cCCEEEEcchhhCC-------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 222222 34699999998864 234555555554211 0 113567999999763
Q ss_pred ----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHH
Q 002159 825 ----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 859 (958)
Q Consensus 825 ----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~ 859 (958)
.++++|++ || ..++++. |+.+...+|++.+.
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~-P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDY-PDIDTETAILRAKT 198 (262)
T ss_pred cceecccHHHHh--hc-EEEECCC-CCHHHHHHHHHHhh
Confidence 56899999 99 5789998 77788888888764
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=5.7e-10 Score=130.40 Aligned_cols=167 Identities=19% Similarity=0.321 Sum_probs=105.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccch-hhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Ges-e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..++||||+|+|||+|++++++++ +..++.+++.++...+.... ...+.+ |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 45678888877766554321 112222 32222235789999999988643
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCcc--ceeeccCCCCHHHHHHHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFD--KLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~ 857 (958)
.+ ....+.. ++..+. . .+..+|+++.+.|.. +++.+.+ ||. ..+.+. |||.+.|..|++.
T Consensus 210 ~~-------~q~elf~-~~n~l~---~-~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~-~pd~e~r~~IL~~ 274 (440)
T PRK14088 210 TG-------VQTELFH-TFNELH---D-SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLE-PPDEETRKKIARK 274 (440)
T ss_pred HH-------HHHHHHH-HHHHHH---H-cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeC-CCCHHHHHHHHHH
Confidence 21 1122222 222222 1 133455555566664 4567777 884 466677 5899999999998
Q ss_pred HHhh--ccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002159 858 LTRK--FKLLEDVSLYSIAKKCPPNFTGADMYALCADAW 894 (958)
Q Consensus 858 ~~~~--~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~ 894 (958)
..+. ..+.+++ ++.||+++ .-+.++|..++..-.
T Consensus 275 ~~~~~~~~l~~ev-~~~Ia~~~--~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 275 MLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHhcCCCCCHHH-HHHHHhcc--ccCHHHHHHHHHHHH
Confidence 8764 4444333 77888874 335566766666543
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=4.9e-10 Score=134.43 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=126.2
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC----------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------------- 734 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---------------- 734 (958)
+.+|+++.|.+.+++.+...+.. -+.+..+||+||+|||||++|+.+|..+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 45799999999988877655421 123456899999999999999999998742
Q ss_pred --------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 735 --------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 735 --------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
+++.+++. .+.+-..+|++...+.. ....|++|||+|.+. ....+.||+
T Consensus 81 ~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------~~a~naLLK 141 (559)
T PRK05563 81 AITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------TGAFNALLK 141 (559)
T ss_pred HHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHHHHHH
Confidence 23333221 11223457777777653 345699999999885 235778888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~ 881 (958)
.|+.. ...+++|.+|+.|+.|.+.+++ |+. .+.|.. ++.++-..+++...++..+.- +..+..+|..+ .|
T Consensus 142 tLEep---p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~-~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s-~G- 212 (559)
T PRK05563 142 TLEEP---PAHVIFILATTEPHKIPATILS--RCQ-RFDFKR-ISVEDIVERLKYILDKEGIEYEDEALRLIARAA-EG- 212 (559)
T ss_pred HhcCC---CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-
Confidence 88754 3466666677889999999988 886 466774 667777777777776554322 23466777773 33
Q ss_pred CHHHHHHHHHHHH
Q 002159 882 TGADMYALCADAW 894 (958)
Q Consensus 882 sGaDi~~l~~~A~ 894 (958)
+.+|..+++..+.
T Consensus 213 ~~R~al~~Ldq~~ 225 (559)
T PRK05563 213 GMRDALSILDQAI 225 (559)
T ss_pred CHHHHHHHHHHHH
Confidence 6667666666543
No 155
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.14 E-value=1.2e-10 Score=124.60 Aligned_cols=180 Identities=24% Similarity=0.288 Sum_probs=116.5
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc------eeeeccchh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN------FLSVKGPEL 744 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~------~i~v~~~~l 744 (958)
+-+++++.|.+.+.+.+..++.. +-..++|||||||||||+.|+++|.++..+ +.+.+.++-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 34678899999888877665421 234579999999999999999999998652 233344333
Q ss_pred hhcccc-chhhhHHHHHHHHHhc---------CC-cEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCc
Q 002159 745 INMYIG-ESEKNVRDIFQKARSA---------RP-CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQD 813 (958)
Q Consensus 745 ~~~~~G-ese~~vr~lf~~A~~~---------~P-~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~ 813 (958)
.+.-++ +.-++ |.+.... .| .|++|||.|++. ...++.|..-||.. .+.
T Consensus 100 rGisvvr~Kik~----fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------sdaq~aLrr~mE~~---s~~ 159 (346)
T KOG0989|consen 100 RGISVVREKIKN----FAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------SDAQAALRRTMEDF---SRT 159 (346)
T ss_pred ccccchhhhhcC----HHHHhhccccccCCCCCcceEEEEechhhhh-------------HHHHHHHHHHHhcc---ccc
Confidence 222221 11122 3332221 22 699999999986 35677888888874 356
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhhCCCCCCHHHHHHHHH
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
+.+|..||.++.|.+.+.. |+.+.-+=++ + .+.....|+....+-.+.-|- .+..|++. ||+||+....
T Consensus 160 trFiLIcnylsrii~pi~S--RC~KfrFk~L-~-d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~-----S~GdLR~Ait 229 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQKFRFKKL-K-DEDIVDRLEKIASKEGVDIDDDALKLIAKI-----SDGDLRRAIT 229 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHHHhcCCCc-c-hHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-----cCCcHHHHHH
Confidence 7777889999999888888 8887655555 4 344455555555544433222 24556655 6778776543
No 156
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3.3e-10 Score=133.87 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=121.7
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC--------------
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL-------------- 734 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~-------------- 734 (958)
+.+..|+++.|.+.++..|...+.. -+.+..+||+|||||||||+|+++|..+..
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3446799999999998877655421 122445799999999999999999998743
Q ss_pred ---------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 735 ---------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 735 ---------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
.++.+++.. ..+-..+|++...+.. ..+.|++|||+|.+. ...++.|+
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~naLL 137 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFNALL 137 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHHHHH
Confidence 133333211 1112346666554432 356799999998663 34577888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
..|+.. ..++++|.+||.++.+.+++.+ |+. .+.|.. ++.++-..+++...++..+. .+..+..+++.+ +
T Consensus 138 k~LEep---~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~-ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~ 208 (504)
T PRK14963 138 KTLEEP---PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRR-LTEEEIAGKLRRLLEAEGREAEPEALQLVARLA--D 208 (504)
T ss_pred HHHHhC---CCCEEEEEEcCChhhCChHHhc--ceE-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 888754 3466777788889999999988 875 678884 67777777777776654432 223356677663 2
Q ss_pred CCHHHHHHHHHH
Q 002159 881 FTGADMYALCAD 892 (958)
Q Consensus 881 ~sGaDi~~l~~~ 892 (958)
-+-+++.++++.
T Consensus 209 GdlR~aln~Lek 220 (504)
T PRK14963 209 GAMRDAESLLER 220 (504)
T ss_pred CCHHHHHHHHHH
Confidence 233444444443
No 157
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.12 E-value=7.4e-10 Score=132.64 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=105.1
Q ss_pred EEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhhhc----------cccc-------hhhhHHHHHHHH
Q 002159 711 VLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINM----------YIGE-------SEKNVRDIFQKA 763 (958)
Q Consensus 711 iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~~~----------~~Ge-------se~~vr~lf~~A 763 (958)
++++|+||||||++++.+..++ ...++.|++..+.+. ..|. +.+.+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998766 145678887443222 1111 223455666654
Q ss_pred H--hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC---CCCCChhhcCcCCccc
Q 002159 764 R--SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR---PDLIDPALLRPGRFDK 838 (958)
Q Consensus 764 ~--~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr---p~~ldpaLlrpgRfd~ 838 (958)
. .....||+|||||.|..+. +.++-.|+.... . ....+.|||++|. |+.++|.+.. ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~----------QDVLYnLFR~~~-~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKT----------QKVLFTLFDWPT-K--INSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCccH----------HHHHHHHHHHhh-c--cCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 2335799999999997421 345555555433 1 2457899999986 5567788877 7754
Q ss_pred -eeeccCCCCHHHHHHHHHHHHhhcc-CCCCcCHHHHHhhCCCCCCHHHHHHHH
Q 002159 839 -LLYVGVNSDVSYRERVLKALTRKFK-LLEDVSLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 839 -~I~v~~ppd~~~r~~Il~~~~~~~~-~~~d~~l~~la~~~t~g~sGaDi~~l~ 890 (958)
.|.|+ |++.++...||+....... .-.+.-+..+|+.. ...++|++.++
T Consensus 929 eeIvF~-PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV--Aq~SGDARKAL 979 (1164)
T PTZ00112 929 GRLVFS-PYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV--ANVSGDIRKAL 979 (1164)
T ss_pred ccccCC-CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh--hhcCCHHHHHH
Confidence 36666 6999999999999887542 22233366666652 23456766543
No 158
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.12 E-value=3.7e-10 Score=110.01 Aligned_cols=122 Identities=39% Similarity=0.614 Sum_probs=84.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhh---HHHHHHHHHhcCCcEEEEccccccc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKN---VRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~---vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
.+..++++||||||||++++.++..+ +.+++.+...+....+....... ....+..+....+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46689999999999999999999998 88888888877655433322111 1223344556678999999998873
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhcCCCC---CCCcEEEEEecCCCC--CCChhhcCcCCccceeecc
Q 002159 781 PARGASGDSGGVMDRVVSQMLAEIDGLND---SSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVG 843 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~~ldg~~~---~~~~v~VI~aTNrp~--~ldpaLlrpgRfd~~I~v~ 843 (958)
. .....++..+..... ...++.+|++||.+. .+++.+.. ||+..++++
T Consensus 98 ~-------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 122333333333321 135788899999887 67888887 999888775
No 159
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.3e-10 Score=130.18 Aligned_cols=154 Identities=16% Similarity=0.318 Sum_probs=111.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---------ccchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM---------ASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~---------s~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
.-.|.-++++||||+|||+++|.||..||..|+.++...+. ..|.|...+++-+.+.....+.|. ++|||
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPl-iLiDE 513 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPL-ILIDE 513 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCce-EEeeh
Confidence 34466789999999999999999999999999988764432 256788888899999888877765 56999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccc
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCF 544 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf 544 (958)
+|.+.. ...| .=.+.|-++++.-.+ ..|.-...+-..--.+|++|||+|..+.||+.|+.|.
T Consensus 514 vDKlG~--g~qG----------DPasALLElLDPEQN------anFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM 575 (906)
T KOG2004|consen 514 VDKLGS--GHQG----------DPASALLELLDPEQN------ANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM 575 (906)
T ss_pred hhhhCC--CCCC----------ChHHHHHHhcChhhc------cchhhhccccccchhheEEEEeccccccCChhhhhhh
Confidence 999974 1111 112233344432111 1111111122222568999999999999999999996
Q ss_pred cEEEEcCCCCHHHHHHHHHHhcc
Q 002159 545 SHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 545 ~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
..|++.-+..++.++|++.++-
T Consensus 576 -EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 576 -EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred -heeeccCccHHHHHHHHHHhhh
Confidence 6789999999999999998873
No 160
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.4e-10 Score=135.36 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=123.0
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
.+.+|+++.|.+.+++.+...+. .-+.+..+||+||+|+||||+|+++|..++..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 34578999999999887765541 11224568999999999999999999988542
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++.. ...-..+|++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-------------~~a~naLL 140 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-------------GHSFNALL 140 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------HHHHHHHH
Confidence 33333221 1122346776665542 344699999999886 23567888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
+.|+.. ..++.+|++|+.+..+.+.+++ |+. .+.+.. .+.+.-...++..+++..+. .+..+..+++.+ +
T Consensus 141 k~LEep---p~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~-l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~ 211 (509)
T PRK14958 141 KTLEEP---PSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQ-LPPLQIAAHCQHLLKEENVEFENAALDLLARAA--N 211 (509)
T ss_pred HHHhcc---CCCeEEEEEECChHhchHHHHH--Hhh-hhhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 888864 3467677777888888888888 884 456663 44555555566555544332 233466777773 4
Q ss_pred CCHHHHHHHHHHHH
Q 002159 881 FTGADMYALCADAW 894 (958)
Q Consensus 881 ~sGaDi~~l~~~A~ 894 (958)
-+..++.+++..++
T Consensus 212 GslR~al~lLdq~i 225 (509)
T PRK14958 212 GSVRDALSLLDQSI 225 (509)
T ss_pred CcHHHHHHHHHHHH
Confidence 46677777776554
No 161
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=4.1e-10 Score=134.68 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=126.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceee-----------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS----------- 738 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~----------- 738 (958)
...+|+++.|.+.+++.|...+.. -+.+..+||+||+|+|||++|+++|..++..-..
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 445799999999998877665421 1235679999999999999999999987542100
Q ss_pred --ecc---chhhh--ccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 002159 739 --VKG---PELIN--MYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 739 --v~~---~~l~~--~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~ 807 (958)
+.. .+++. ...+.+-..+|++++.+.. ....|+||||+|.+. ....+.||+.|+..
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-------------~~A~NALLKtLEEP 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-------------KSAFNAMLKTLEEP 146 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------HHHHHHHHHHHHhC
Confidence 000 01110 0011123457777776532 344799999998764 24567888888854
Q ss_pred CCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHH
Q 002159 808 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADM 886 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi 886 (958)
...+.+|++||.+..+.+.++. |+ ..+.|.. ++.+.-..+++..+++..+. .+..+..|++.+ +-+.+++
T Consensus 147 ---p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~-Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdA 217 (709)
T PRK08691 147 ---PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRN-MTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDA 217 (709)
T ss_pred ---CCCcEEEEEeCCccccchHHHH--HH-hhhhcCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHH
Confidence 3567777788889989888886 88 3456654 56666677777777655432 223467778773 5567777
Q ss_pred HHHHHHHHH
Q 002159 887 YALCADAWF 895 (958)
Q Consensus 887 ~~l~~~A~~ 895 (958)
.+++..+..
T Consensus 218 lnLLDqaia 226 (709)
T PRK08691 218 LSLLDQAIA 226 (709)
T ss_pred HHHHHHHHH
Confidence 777766544
No 162
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.5e-11 Score=142.28 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=47.2
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCC-------CcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-------GSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~-------~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
+++..+.++...++|+| +++|+.|++.++.+++.+.+|+ ....++.++.....+ ++.||+..+..
T Consensus 143 gl~~~~~~~~~~~LSgG---q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPG---WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNS 217 (530)
T ss_pred CCChhHhcCchhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 44433334455789999 9999999999999888774444 446677777765433 88999998764
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=5.7e-10 Score=138.09 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=118.9
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
...+|++|.|.+.+++.|...+. .+ +....+||+||+|||||++|+++|..+.+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~----------~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALD----------SG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----------hC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 34579999999998887765541 11 224458999999999999999999988531
Q ss_pred ------------eeeeccchhhhccccchhhhHHHHHHHH----HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHH
Q 002159 736 ------------FLSVKGPELINMYIGESEKNVRDIFQKA----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQ 799 (958)
Q Consensus 736 ------------~i~v~~~~l~~~~~Gese~~vr~lf~~A----~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~ 799 (958)
|+.+++... ..-..+|++-+.+ ......|+||||+|.|. ....|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-------------~~a~Na 139 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-------------PQGFNA 139 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-------------HHHHHH
Confidence 222222110 0123345543333 23456799999999985 345788
Q ss_pred HHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCC
Q 002159 800 MLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCP 878 (958)
Q Consensus 800 LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t 878 (958)
||+.|+.. ..++++|++|+.++.|-+.|+. |+. .+.|.. ...+....+|+..+++..+.- +..+..+++.+
T Consensus 140 LLK~LEEp---P~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~-l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s- 211 (824)
T PRK07764 140 LLKIVEEP---PEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRL-VPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG- 211 (824)
T ss_pred HHHHHhCC---CCCeEEEEEeCChhhhhHHHHh--hee-EEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-
Confidence 99988865 3567777777888888899988 874 566764 556666777777665544432 22355566663
Q ss_pred CCCCHHHHHHHHHH
Q 002159 879 PNFTGADMYALCAD 892 (958)
Q Consensus 879 ~g~sGaDi~~l~~~ 892 (958)
|-+-.++.+++..
T Consensus 212 -gGdlR~Al~eLEK 224 (824)
T PRK07764 212 -GGSVRDSLSVLDQ 224 (824)
T ss_pred -CCCHHHHHHHHHH
Confidence 3345555555544
No 164
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=5.7e-10 Score=133.79 Aligned_cols=185 Identities=17% Similarity=0.225 Sum_probs=122.0
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
..+|+++.|.+.+++.|...+. .-+.+..+||+||+|+||||+|+++|+.++..
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 3578999999988877765431 11224567999999999999999999987541
Q ss_pred --------------eeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHH
Q 002159 736 --------------FLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVV 797 (958)
Q Consensus 736 --------------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~ 797 (958)
++.+++.. ...-..+|++.+.+.. ....|++|||+|.+. ....
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------~~a~ 141 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------NTAF 141 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------HHHH
Confidence 22222110 0112356777766543 234699999999985 2347
Q ss_pred HHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhh
Q 002159 798 SQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKK 876 (958)
Q Consensus 798 ~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~ 876 (958)
|.||+.|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.+.. .+.+....+++...++..+.- +..+..|++.
T Consensus 142 NaLLKtLEEP---P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~-Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 142 NAMLKTLEEP---PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRP-MAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHhcccC---CCCeEEEEEECCchhhhHHHHH--hc-eeeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7888888753 3566677777888888888888 88 5667764 556666777776665544322 2336777877
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 002159 877 CPPNFTGADMYALCADAW 894 (958)
Q Consensus 877 ~t~g~sGaDi~~l~~~A~ 894 (958)
+ +-+.+++.+++..+.
T Consensus 215 s--~GslR~al~lLdq~i 230 (618)
T PRK14951 215 A--RGSMRDALSLTDQAI 230 (618)
T ss_pred c--CCCHHHHHHHHHHHH
Confidence 3 336677777665443
No 165
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=2.1e-09 Score=129.84 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=124.1
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee---c------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV---K------ 740 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v---~------ 740 (958)
.+.+|+++.|.+.+++.+...+.. + +.+..+||+||+|+|||++|+++|..+...--.. .
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS----------N-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 345799999999988777655421 1 2245689999999999999999998875421000 0
Q ss_pred ----cchhhhcccc---chhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q 002159 741 ----GPELINMYIG---ESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND 809 (958)
Q Consensus 741 ----~~~l~~~~~G---ese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~ 809 (958)
.++++.. -+ .+...+|++.+.+.. ....|++|||+|.+. ....+.||..|+..
T Consensus 82 ~~~~~~Dviei-daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------~~A~NALLKtLEEP-- 145 (725)
T PRK07133 82 NVNNSLDIIEM-DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------KSAFNALLKTLEEP-- 145 (725)
T ss_pred hhcCCCcEEEE-eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------HHHHHHHHHHhhcC--
Confidence 0011000 01 123447888777664 344699999999875 23578889888864
Q ss_pred CCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHhhCCCCCCHHHHHH
Q 002159 810 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYA 888 (958)
Q Consensus 810 ~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~~~t~g~sGaDi~~ 888 (958)
+..+++|++|+.++.|.+.+++ |+. .+.|.. ++.+.-..+++...++..+.-+ ..+..+|..+ +-+.+++.+
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~-L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS--~GslR~Als 218 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRR-ISEDEIVSRLEFILEKENISYEKNALKLIAKLS--SGSLRDALS 218 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHH
Confidence 3567777788889999999998 885 678874 6677777777766655443222 2356677763 344455555
Q ss_pred HHHHH
Q 002159 889 LCADA 893 (958)
Q Consensus 889 l~~~A 893 (958)
++..+
T Consensus 219 lLekl 223 (725)
T PRK07133 219 IAEQV 223 (725)
T ss_pred HHHHH
Confidence 55543
No 166
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=4.9e-10 Score=130.96 Aligned_cols=187 Identities=16% Similarity=0.205 Sum_probs=128.4
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC---------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--------------- 734 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--------------- 734 (958)
.+.+|+|+.|.+.+++.+...+ ..+ +.+..+||+||+|+||||+|+++|..++.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~----------~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAF----------TLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHH----------HcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 3457999999999888775432 212 23567999999999999999999986532
Q ss_pred ---------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 735 ---------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 735 ---------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
.++.+++++- .+-..+|++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~NaLL 137 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFNALL 137 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHHHHH
Confidence 2344433211 123457777777653 345699999998885 24578899
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
+.|+.. ...+.+|++|+.++.+.+.+++ |+. .+.+.. ++.++...+++...++.... ++..+..|++.+ +
T Consensus 138 K~LEeP---p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~-l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s--~ 208 (491)
T PRK14964 138 KTLEEP---APHVKFILATTEVKKIPVTIIS--RCQ-RFDLQK-IPTDKLVEHLVDIAKKENIEHDEESLKLIAENS--S 208 (491)
T ss_pred HHHhCC---CCCeEEEEEeCChHHHHHHHHH--hhe-eeeccc-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 998864 3467777777888889999988 884 567764 56666777777766654432 334467788874 4
Q ss_pred CCHHHHHHHHHHHHH
Q 002159 881 FTGADMYALCADAWF 895 (958)
Q Consensus 881 ~sGaDi~~l~~~A~~ 895 (958)
-+.+++.+++..++.
T Consensus 209 GslR~alslLdqli~ 223 (491)
T PRK14964 209 GSMRNALFLLEQAAI 223 (491)
T ss_pred CCHHHHHHHHHHHHH
Confidence 577777777766554
No 167
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.08 E-value=1.9e-09 Score=116.94 Aligned_cols=120 Identities=29% Similarity=0.577 Sum_probs=85.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCc---eeeeccchhhhccccchhhhHHHHHHHHHh-----cCCcEEEEccccccc
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLN---FLSVKGPELINMYIGESEKNVRDIFQKARS-----ARPCVIFFDELDSLA 780 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~---~i~v~~~~l~~~~~Gese~~vr~lf~~A~~-----~~P~ILfiDEiD~l~ 780 (958)
..++||||||||||+||+.|+.....+ |+.+++.. ...+.+|++|+.++. .+..|||||||+.+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 469999999999999999999988766 77777533 234678999999874 355799999999886
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec-CCC-CCCChhhcCcCCccceeeccCCCCHHHHHHHHHH
Q 002159 781 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS-NRP-DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT-Nrp-~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~ 857 (958)
...+ ..+|-.++ .+.|.+|||| ..| -.+..||+. |+-..+.-++| ...-..||..
T Consensus 236 ksQQ-------------D~fLP~VE-----~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~--~n~v~~iL~r 292 (554)
T KOG2028|consen 236 KSQQ-------------DTFLPHVE-----NGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLP--VNAVVTILMR 292 (554)
T ss_pred hhhh-------------hcccceec-----cCceEEEecccCCCccchhHHHHh--ccceeEeccCC--HHHHHHHHHH
Confidence 4321 12332222 3567777776 334 478999999 98766666663 3455566654
No 168
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=1.5e-09 Score=128.67 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=120.6
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC----------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------------- 734 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---------------- 734 (958)
+..|+++.|.+.+++.+...+. .+ +.+..+||+||+|+|||++|+++|..+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~----------~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAIL----------NN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 3568899999998877755431 11 22466999999999999999999998742
Q ss_pred --------ceeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 735 --------NFLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 735 --------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
.++.+++.. .-.-..+|.+.+.+... ...|++|||+|.+. ....+.||.
T Consensus 81 ~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-------------~~A~NaLLK 141 (605)
T PRK05896 81 SINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------------TSAWNALLK 141 (605)
T ss_pred HHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------HHHHHHHHH
Confidence 122222211 01123467776665432 33599999999884 124678888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~t~g~ 881 (958)
.|+.. ...+++|++|+.++.|.+++++ |+. .+.+.. ++.++...+++...++... -++..+..++..+ +-
T Consensus 142 tLEEP---p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~-Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS--~G 212 (605)
T PRK05896 142 TLEEP---PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKK-LNNSELQELLKSIAKKEKIKIEDNAIDKIADLA--DG 212 (605)
T ss_pred HHHhC---CCcEEEEEECCChHhhhHHHHh--hhh-hcccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CC
Confidence 88854 3567777788889999999998 886 678874 6677777777776655432 1223366677763 33
Q ss_pred CHHHHHHHHHH
Q 002159 882 TGADMYALCAD 892 (958)
Q Consensus 882 sGaDi~~l~~~ 892 (958)
+.+++.+++..
T Consensus 213 dlR~AlnlLek 223 (605)
T PRK05896 213 SLRDGLSILDQ 223 (605)
T ss_pred cHHHHHHHHHH
Confidence 45555555554
No 169
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.07 E-value=1.7e-09 Score=115.32 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=103.4
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..+..++|+||+|||||++|++++..+ +.+++.+++.++.... ..++.... .+.+|+|||+|.+...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ 105 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC
Confidence 346789999999999999999999876 4678888877764321 23333332 2359999999988532
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC---hhhcCcCCc--cceeeccCCCCHHHHHHHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID---PALLRPGRF--DKLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld---paLlrpgRf--d~~I~v~~ppd~~~r~~Il~~ 857 (958)
. .. ...+..++..+.. .+..+|+.++..+..++ +.|.+ || ...+.++. ++.+++..+++.
T Consensus 106 ~-------~~-~~~L~~~l~~~~~----~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~-l~~~e~~~~l~~ 170 (226)
T TIGR03420 106 P-------EW-QEALFHLYNRVRE----AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPP-LSDEEKIAALQS 170 (226)
T ss_pred h-------HH-HHHHHHHHHHHHH----cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCC-CCHHHHHHHHHH
Confidence 1 01 1223333333322 12344444444444332 67776 66 46788884 778888999887
Q ss_pred HHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 002159 858 LTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAA 898 (958)
Q Consensus 858 ~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~ 898 (958)
...+..+. .+.-+..|+.. -+-+.+++.++++++...+.
T Consensus 171 ~~~~~~~~~~~~~l~~L~~~--~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 171 RAARRGLQLPDEVADYLLRH--GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHHHcCCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHH
Confidence 76544332 22235666665 35567888888887665443
No 170
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.05 E-value=7.3e-11 Score=140.58 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=41.4
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc--CC----CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT--SG----FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t--~G----fv~~DL~~Lv~ 602 (958)
.+.+...++|+| ++||+.|++.++.+++.+.+|+.. ..++.++..+. .| ++.||+..+..
T Consensus 128 ~~~~~~~~LSgG---~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~ 200 (490)
T PRK10938 128 LLDRRFKYLSTG---ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPD 200 (490)
T ss_pred hhhCCcccCCHH---HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 345666899999 999999999999998887666543 33333333222 13 78898877653
No 171
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.05 E-value=1.3e-08 Score=116.54 Aligned_cols=199 Identities=19% Similarity=0.255 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCcccccc-------
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHNLMASS------- 437 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg---------~~~~~I~~~~l~s~~------- 437 (958)
+..+.|...+.+.+.. ..+.+++|+||||||||++++.+++++. ..+++++|....+.+
T Consensus 22 ~e~~~l~~~l~~~~~~-----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 22 EQIEELAKALRPILRG-----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred HHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 3455666666655442 2335699999999999999999998763 468889986533211
Q ss_pred ------------hh-chHHHHHHHHHHhh-cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcc
Q 002159 438 ------------ER-KTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (958)
Q Consensus 438 ------------~g-~~e~~l~~~f~~A~-~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~ 503 (958)
.+ .....+..++.... ...+.+++|||+|.+... . ...+..++ ++.+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~----~~~L~~l~-~~~~------ 157 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D----DDLLYQLS-RARS------ 157 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C----cHHHHhHh-cccc------
Confidence 00 01122333444332 245789999999998631 0 01122211 2100
Q ss_pred ccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChhhhcccc-EEEEcCCCCHHHHHHHHHHhccCC-cccCCCCCc
Q 002159 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPV-SELTSDTGS 578 (958)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf~-~eIsig~Pde~qR~~Il~~ll~~~-~~l~~D~~~ 578 (958)
.......++.+|+++|.+. .+++.+.++|. ..+.+++++.++..+|++..+... .....+.+.
T Consensus 158 ------------~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~ 225 (365)
T TIGR02928 158 ------------NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV 225 (365)
T ss_pred ------------ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH
Confidence 0011246789999998875 57778888874 679999999999999999887521 110111122
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002159 579 EEFVKDIIGQTSGFMPRDLHALVADAGANLI 609 (958)
Q Consensus 579 ~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~ 609 (958)
...+..++..+.|..- ....+++.|...+.
T Consensus 226 l~~i~~~~~~~~Gd~R-~al~~l~~a~~~a~ 255 (365)
T TIGR02928 226 IPLCAALAAQEHGDAR-KAIDLLRVAGEIAE 255 (365)
T ss_pred HHHHHHHHHHhcCCHH-HHHHHHHHHHHHHH
Confidence 2234445555555322 22334555554443
No 172
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=1.7e-09 Score=124.14 Aligned_cols=190 Identities=18% Similarity=0.291 Sum_probs=119.1
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh-----
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL----- 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l----- 744 (958)
.+..|+++.|.+.+++.+...+. .+ ..+..++||||||+|||++|++++..+..+.....+...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~----------~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIE----------NN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 34578999999988776655442 11 234689999999999999999999987542211110000
Q ss_pred -hhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 745 -INMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 745 -~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.+.........++++++.+.. ..+.|++|||+|.+. ...++.|+..++.. ....++|++
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~---~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEP---PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCC---CCceEEEEE
Confidence 011111123567777776643 235699999998774 23467788777753 234556666
Q ss_pred cCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 820 SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 820 TNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
|+.+..+.+++.+ |+. .+.++. ++.++...++....++..+ -++..+..++..+ |-+-+.+.+.++.
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~-~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~--~gdlr~~~~~lek 212 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKR-ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA--DGALRDALSIFDR 212 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCC-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 7778888899987 774 577874 6677777777766655443 2234466677763 3344444444443
No 173
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.05 E-value=3.3e-09 Score=114.11 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC---CceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARG 784 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~---~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~ 784 (958)
...++||||+|||||+|+++++.+.. ..+..+...+... ...++.+.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 45799999999999999999998764 3344444333211 11222333222 2599999999886321
Q ss_pred CCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCcc--ceeeccCCCCHHHHHHHHHHHH
Q 002159 785 ASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFD--KLLYVGVNSDVSYRERVLKALT 859 (958)
Q Consensus 785 ~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~~~ 859 (958)
. ....+-.++..+- +..+.-+++.+++.|.. +.|.|++ |+. ..+.+. ||+.+.+..|++...
T Consensus 114 ------~-~~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~-~~~~~~~~~~l~~~a 180 (235)
T PRK08084 114 ------L-WEMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQ-PLSDEEKLQALQLRA 180 (235)
T ss_pred ------H-HHHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeec-CCCHHHHHHHHHHHH
Confidence 1 1222333333321 11122355555555554 6799998 986 667777 478888999988754
Q ss_pred hh--ccCCCCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 860 RK--FKLLEDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 860 ~~--~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
.. +.+.++ -++.|++++ .=+.+.+..++..
T Consensus 181 ~~~~~~l~~~-v~~~L~~~~--~~d~r~l~~~l~~ 212 (235)
T PRK08084 181 RLRGFELPED-VGRFLLKRL--DREMRTLFMTLDQ 212 (235)
T ss_pred HHcCCCCCHH-HHHHHHHhh--cCCHHHHHHHHHH
Confidence 43 444333 367888885 3456666666665
No 174
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=7.6e-10 Score=131.92 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=121.4
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCcee-ee----------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL-SV---------- 739 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i-~v---------- 739 (958)
+.+|+++.|.+.+++.+...+. .-+.+..+||+||+|+||||+|+++|..+....- ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3578999999998887755432 1122456899999999999999999998854210 00
Q ss_pred --c---cchhhhc--cccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC
Q 002159 740 --K---GPELINM--YIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN 808 (958)
Q Consensus 740 --~---~~~l~~~--~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~ 808 (958)
. -++++.. .....-..+|++.+.+.. ....|++|||+|.+. ....|.||+.|+..
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------~~a~naLLK~LEep- 146 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------KSAFNAMLKTLEEP- 146 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------HHHHHHHHHHHhCC-
Confidence 0 0011000 001122357777776643 234699999999885 24577899888864
Q ss_pred CCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCCCHHHHH
Q 002159 809 DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMY 887 (958)
Q Consensus 809 ~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~ 887 (958)
...+.+|++|+.++.+.+.+++ |+ ..+.|.. ++.+.-...++..+++..+.. +..+..+++.+ +-+.+++.
T Consensus 147 --p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~-l~~~~i~~~L~~il~~egi~~~~~al~~la~~s--~Gslr~al 218 (527)
T PRK14969 147 --PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPPPLIVSHLQHILEQENIPFDATALQLLARAA--AGSMRDAL 218 (527)
T ss_pred --CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHH
Confidence 3567777777888888888887 87 5677774 556666656665554433322 23356667663 45566766
Q ss_pred HHHHHHH
Q 002159 888 ALCADAW 894 (958)
Q Consensus 888 ~l~~~A~ 894 (958)
+++..|.
T Consensus 219 ~lldqai 225 (527)
T PRK14969 219 SLLDQAI 225 (527)
T ss_pred HHHHHHH
Confidence 7766544
No 175
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.1e-09 Score=130.62 Aligned_cols=170 Identities=17% Similarity=0.239 Sum_probs=111.4
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
...+|++|.|.+.+++.|...+. .+ +-...+||+||+|+|||++|+++|+.+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~----------~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQ----------EN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH----------cC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 34578999999988877765442 11 124579999999999999999999988642
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++.. .. .-..+|.+.+.+. .....||||||+|.+. ....+.||
T Consensus 80 ~~i~~g~hpDv~eId~a~----~~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~naLL 140 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS----NR--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAFNALL 140 (624)
T ss_pred HHHhcCCCCceEEEeccc----cc--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHHHHHH
Confidence 22232210 00 1123444333222 3345799999999885 23568888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhh
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKK 876 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~ 876 (958)
+.|+.. ...+++|++||.++.+.+.+++ |+. .+.|+. .+.++-..+|+...++..+ -.+..+..+++.
T Consensus 141 k~LEEP---~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~p-Ls~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 141 KTLEEP---PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTR-LSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHhhcc---CCCEEEEEecCChhhhhHHHHh--hhh-ccccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888753 3467777888888888888888 885 567874 6667677777766655433 122335566665
No 176
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.04 E-value=2.5e-09 Score=132.48 Aligned_cols=193 Identities=19% Similarity=0.267 Sum_probs=119.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc---------cchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s---------~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
.+..++|+||||+||||+++.+|+.++.+++.+++..... .+.|...+.+.+.+..+....| +++|||+|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEid 426 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEID 426 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChh
Confidence 4456999999999999999999999999999988655321 2445556677777776664444 78999999
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
.+.... + + .....|-++++.-.+... .+.|. . -...-.++++|||+|.. .+++++++|+ .
T Consensus 427 k~~~~~--------~-g---~~~~aLlevld~~~~~~~--~d~~~-~---~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ 486 (784)
T PRK10787 427 KMSSDM--------R-G---DPASALLEVLDPEQNVAF--SDHYL-E---VDYDLSDVMFVATSNSM-NIPAPLLDRM-E 486 (784)
T ss_pred hccccc--------C-C---CHHHHHHHHhccccEEEE--ecccc-c---ccccCCceEEEEcCCCC-CCCHHHhcce-e
Confidence 886521 0 0 111222233221000000 00010 0 01124789999999887 6999999998 5
Q ss_pred EEEcCCCCHHHHHHHHHHhccCC--c--ccC-CCCC-cHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPV--S--ELT-SDTG-SEEFVKDIIGQT-SGFMPRDLHALVADAGANLI 609 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~--~--~l~-~D~~-~~~~L~~la~~t-~Gfv~~DL~~Lv~eA~~~a~ 609 (958)
.+.+..+++++..+|++.++... . .+. .... .+..++.++..+ ..+-.+.+..++.......+
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l 556 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAV 556 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHH
Confidence 78999999999999999888310 0 001 0111 133344454432 33556677766665444443
No 177
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.5e-09 Score=129.78 Aligned_cols=183 Identities=16% Similarity=0.244 Sum_probs=118.1
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
..+|+++.|.+.+++.|...+. .+ +.+..+||+||+||||||+|+++|..+...
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~----------~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALD----------AG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 4579999999998887765542 11 223457999999999999999999987531
Q ss_pred -----------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHH
Q 002159 736 -----------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQM 800 (958)
Q Consensus 736 -----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~L 800 (958)
++.+++... ..-..+|++.+.+. .....|++|||+|.+. ....+.|
T Consensus 78 ~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-------------~~A~NAL 138 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-------------TAGFNAL 138 (584)
T ss_pred HhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-------------HHHHHHH
Confidence 222222110 01234555544443 2344699999999885 2367888
Q ss_pred HHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCC
Q 002159 801 LAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPP 879 (958)
Q Consensus 801 L~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~ 879 (958)
|+.|+.. ..++++|++|+.++.|.+++++ |+ ..+.|.. .+.+.-..+++...++.... .+..+..+++. .
T Consensus 139 LK~LEEp---p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~-l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~--s 209 (584)
T PRK14952 139 LKIVEEP---PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRL-LPPRTMRALIARICEQEGVVVDDAVYPLVIRA--G 209 (584)
T ss_pred HHHHhcC---CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--c
Confidence 9988854 4577777788888999999988 86 4677774 55666666777666654432 22234556655 2
Q ss_pred CCCHHHHHHHHHH
Q 002159 880 NFTGADMYALCAD 892 (958)
Q Consensus 880 g~sGaDi~~l~~~ 892 (958)
|-+.+++.+++..
T Consensus 210 ~GdlR~aln~Ldq 222 (584)
T PRK14952 210 GGSPRDTLSVLDQ 222 (584)
T ss_pred CCCHHHHHHHHHH
Confidence 4445555555543
No 178
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.6e-09 Score=128.35 Aligned_cols=185 Identities=19% Similarity=0.246 Sum_probs=118.7
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC----------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------------- 734 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---------------- 734 (958)
+..|+++.|.+.+++.+...+. .+ +.+..+||+||+|+||||+|+++|..+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~----------~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALE----------TQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3568899999998877654431 11 22445899999999999999999997753
Q ss_pred --------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH
Q 002159 735 --------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 802 (958)
Q Consensus 735 --------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~ 802 (958)
.++.+++.. ..| -..++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 81 ~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------~~a~naLLK 141 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------KQSFNALLK 141 (546)
T ss_pred HHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------HHHHHHHHH
Confidence 122222110 011 1245566555542 345699999998875 346778888
Q ss_pred hhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCC
Q 002159 803 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNF 881 (958)
Q Consensus 803 ~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~ 881 (958)
.|+.. .+.+.+|++|+.+..+.+.++. |+ ..+++.. ++.++-..+++...++..+. .+..+..+++.+ +-
T Consensus 142 ~LEep---p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~-Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s--~G 212 (546)
T PRK14957 142 TLEEP---PEYVKFILATTDYHKIPVTILS--RC-IQLHLKH-ISQADIKDQLKIILAKENINSDEQSLEYIAYHA--KG 212 (546)
T ss_pred HHhcC---CCCceEEEEECChhhhhhhHHH--he-eeEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CC
Confidence 88854 3456666666778888888887 88 5677774 66666666676666554432 223356666663 44
Q ss_pred CHHHHHHHHHHHH
Q 002159 882 TGADMYALCADAW 894 (958)
Q Consensus 882 sGaDi~~l~~~A~ 894 (958)
+.+++.+++..++
T Consensus 213 dlR~alnlLek~i 225 (546)
T PRK14957 213 SLRDALSLLDQAI 225 (546)
T ss_pred CHHHHHHHHHHHH
Confidence 5556656655443
No 179
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.02 E-value=6.2e-09 Score=107.96 Aligned_cols=171 Identities=23% Similarity=0.432 Sum_probs=125.1
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccc
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP 742 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~ 742 (958)
.+..+.+...++.|++.+|+.+.+ +.+.|..|. +..++||+|..|||||+|+||+-++. +..++.|...
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~-------NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVR-------NTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHH-------HHHHHHcCC-cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 455667888999999999988744 334455554 47899999999999999999998887 4668888876
Q ss_pred hhhhccccchhhhHHHHHHHHHhc-CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-CCCCCCcEEEEEec
Q 002159 743 ELINMYIGESEKNVRDIFQKARSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-LNDSSQDLFIIGAS 820 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~-~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-~~~~~~~v~VI~aT 820 (958)
++. .+-.+++..+.. ..-|||+|++- -+.+ +.-...|-..||| +...+.||+|.+|+
T Consensus 123 dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLS---------Fe~g---d~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 123 DLA---------TLPDLVELLRARPEKFILFCDDLS---------FEEG---DDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred HHh---------hHHHHHHHHhcCCceEEEEecCCC---------CCCC---chHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 663 344555555543 34699999972 1222 2334455566675 55567899999999
Q ss_pred CCCCCCChhh--------------------cCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC
Q 002159 821 NRPDLIDPAL--------------------LRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE 866 (958)
Q Consensus 821 Nrp~~ldpaL--------------------lrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~ 866 (958)
||-+.|+.-+ .=..||.-++-|. |++.+.-..|...+.+++.++-
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~-~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFY-PCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeeccc-CCCHHHHHHHHHHHHHHcCCCC
Confidence 9988776322 1134999999999 5999999999999998887754
No 180
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.01 E-value=2.1e-09 Score=119.05 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--chhchHHH----------HHHHHHHhhcCCCeEEeecch
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMAS--SERKTSAA----------LAQAFNTAQSYSPTILLLRDF 465 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~--~~g~~e~~----------l~~~f~~A~~~~P~IL~iDei 465 (958)
++|+|.|||||||||+++.+|..++.+++.|+|...+.. ..|...-. ....+..|. ..+.++++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEechh
Confidence 459999999999999999999999999999998754432 12211100 011222333 35789999999
Q ss_pred hhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCch-hhhhhh-hcCcEEEEEecCCCC---------
Q 002159 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV-KEIEKI-CRQQVLLVAAADSSE--------- 534 (958)
Q Consensus 466 d~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~-~~~~~~-~~~~ViVIaaTn~~~--------- 534 (958)
|...+ ++...|..+++. ++.... ...+.. ....+.||||+|...
T Consensus 144 n~a~p----------------~~~~~L~~lLE~---------~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~ 198 (327)
T TIGR01650 144 DAGRP----------------DVMFVIQRVLEA---------GGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYH 198 (327)
T ss_pred hccCH----------------HHHHHHHHHhcc---------CCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCccee
Confidence 97654 223333344331 011111 111122 245789999999753
Q ss_pred ---CCChhhhccccEEEEcCCCCHHHHHHHHHHhcc
Q 002159 535 ---GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 535 ---~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
.++++.+.||...+.++.|+++.-.+|+.....
T Consensus 199 Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 199 GTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc
Confidence 358899999988899999999999999887653
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=4e-09 Score=127.17 Aligned_cols=183 Identities=17% Similarity=0.279 Sum_probs=120.2
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
.+.+|+++.|.+.+++.+...+. .+ +.+..+|||||+|+|||++|+++|+.+...
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~----------~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAID----------TG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 34579999999999887765542 11 234568999999999999999999987532
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++.. ...-..+|++.+.+... ...|++|||+|.+. ....|.||
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------~~a~naLL 140 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------TNAFNALL 140 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------HHHHHHHH
Confidence 22222211 11223567777666432 33699999999885 24568899
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
+.|+.. ..++++|++||.++.|.+.+++ |+. .+.|.. ++.+.-...++...++..+. ++..+..+++.+ +
T Consensus 141 k~LEep---p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~-l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a--~ 211 (576)
T PRK14965 141 KTLEEP---PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRR-IPLQKIVDRLRYIADQEGISISDAALALVARKG--D 211 (576)
T ss_pred HHHHcC---CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc--C
Confidence 988854 3567777788889999999988 874 566764 55555556666655544332 233466777773 2
Q ss_pred CCHHHHHHHHH
Q 002159 881 FTGADMYALCA 891 (958)
Q Consensus 881 ~sGaDi~~l~~ 891 (958)
-+-+++.+++.
T Consensus 212 G~lr~al~~Ld 222 (576)
T PRK14965 212 GSMRDSLSTLD 222 (576)
T ss_pred CCHHHHHHHHH
Confidence 24445555444
No 182
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.00 E-value=3.2e-09 Score=117.51 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=97.6
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc--cccchhh----------hHHHHHHHHHhcCCcEE
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM--YIGESEK----------NVRDIFQKARSARPCVI 771 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~--~~Gese~----------~vr~lf~~A~~~~P~IL 771 (958)
++..+++|+|.||||||||++++.+|..++.+++.+++...... ++|...- -....+..|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 45567889999999999999999999999999999987665544 4554211 11223444443 45789
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHh-----hcCCC---CCCCcEEEEEecCCCC------------CCChhhc
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAE-----IDGLN---DSSQDLFIIGASNRPD------------LIDPALL 831 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~-----ldg~~---~~~~~v~VI~aTNrp~------------~ldpaLl 831 (958)
++||+|..-+. ....++.+|.. +.+.. .....+.||+|+|..+ .+++|++
T Consensus 139 llDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 139 CFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred EechhhccCHH----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99999977431 12334445442 11110 1223688999999864 4578999
Q ss_pred CcCCccceeeccCCCCHHHHHHHHHHHHh
Q 002159 832 RPGRFDKLLYVGVNSDVSYRERVLKALTR 860 (958)
Q Consensus 832 rpgRfd~~I~v~~ppd~~~r~~Il~~~~~ 860 (958)
. ||-..+.++. |+.+.-..|++....
T Consensus 209 D--RF~i~~~~~Y-p~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 209 D--RWSIVTTLNY-LEHDNEAAIVLAKAK 234 (327)
T ss_pred h--heeeEeeCCC-CCHHHHHHHHHhhcc
Confidence 8 9988888998 667777777766543
No 183
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.00 E-value=2.4e-09 Score=120.10 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=109.9
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC-----Cceeeeccchh
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPEL 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~-----~~~i~v~~~~l 744 (958)
.+.+|+++.|.+.+++.+...+. .+ ...+++|+||||||||++++++++++. .+++.++.++-
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~----------~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVK----------EK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHh----------CC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 34578888888887777655431 11 123589999999999999999999873 34454443321
Q ss_pred hhccccchhhhHHHHHH-HHHh-----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 002159 745 INMYIGESEKNVRDIFQ-KARS-----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIG 818 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~-~A~~-----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~ 818 (958)
. ....+++.+. .++. ..+.+++|||+|.+.. ...+.|+..++... .+..+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~---~~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYS---QNTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCC---CCCeEEE
Confidence 1 1111222222 2221 2346999999998852 22345666666542 2344555
Q ss_pred ecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 819 ASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 819 aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
++|.+..+.+++.+ |+. .+.++. ++.++...+++...++..+. .+..+..+++. +|+|++.+.+.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~-l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~-----~~gd~r~~~~~ 203 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSP-LKKEAVAERLRYIAENEGIEITDDALEAIYYV-----SEGDMRKAINA 203 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----cCCCHHHHHHH
Confidence 67777777778877 776 478874 67777788888777655432 23346677766 34455554443
No 184
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.00 E-value=2.6e-09 Score=119.82 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=101.0
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCC-CcEEEecCCCChhHHHHHHHHHHc-------CC--ceeeec
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKR-SGVLLYGPPGTGKTLLAKAVATEC-------SL--NFLSVK 740 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~-~~iLL~GppGtGKTtLakaiA~~~-------~~--~~i~v~ 740 (958)
...|.++.|.+.+++.+.-.. +.++ .++||+|+|||||||+|+++++.+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~-------------~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTA-------------IDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHH-------------hccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 356888999998887653211 1123 579999999999999999999987 22 233222
Q ss_pred cc---------hhhh---------------ccccch--hhhH---HHHHHHH--HhcCCcEEEEcccccccCCCCCCCCC
Q 002159 741 GP---------ELIN---------------MYIGES--EKNV---RDIFQKA--RSARPCVIFFDELDSLAPARGASGDS 789 (958)
Q Consensus 741 ~~---------~l~~---------------~~~Ges--e~~v---r~lf~~A--~~~~P~ILfiDEiD~l~~~r~~~~~~ 789 (958)
+. ++.. ..+|.. ++.+ ...|+.- ..+...+||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 11 1100 012210 0000 0011110 01223599999998875
Q ss_pred cchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 790 GGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 790 ~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
..+++.|+..|+.-. .....+++++|+|..+ .++++|+. ||...+.++.|.+.++|.+|++..
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 356677777665321 1234688888888655 58999999 999999999867778999998874
Q ss_pred H
Q 002159 859 T 859 (958)
Q Consensus 859 ~ 859 (958)
.
T Consensus 216 ~ 216 (334)
T PRK13407 216 D 216 (334)
T ss_pred h
Confidence 3
No 185
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.1e-10 Score=139.79 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=40.5
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHH----HHHhhhcCC----CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFV----KDIIGQTSG----FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L----~~la~~t~G----fv~~DL~~Lv~ 602 (958)
+.+...++|+| ++||+.|++.++.+++.+.+|+.. ..++ .++++. | ++.||+..+..
T Consensus 139 ~~~~~~~LSgG---~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 139 LDEKVANLSIS---HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRR 210 (510)
T ss_pred cccchhhCCHH---HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHH
Confidence 34556789999 999999999999998877555443 3333 333332 3 78999887754
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.00 E-value=2.1e-10 Score=136.92 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=28.7
Q ss_pred hhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 701 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 701 ~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
++..+.++..+.|.||||+|||||+++|++...
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 345678899999999999999999999998764
No 187
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=2.2e-09 Score=126.48 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=119.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc-------------e
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------F 736 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------~ 736 (958)
.+..|+++.|.+.+...+...+. .+ +.+..+|||||+|+|||++|+++|..+... +
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~----------~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVK----------LQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 34578899999998877755541 11 223457899999999999999999987531 0
Q ss_pred eeecc---chhhhc--cccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 002159 737 LSVKG---PELINM--YIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 737 i~v~~---~~l~~~--~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~ 807 (958)
..+.. ++++.. -....-..+|.+.+.+.. ..+.|++|||+|.+. ....+.|+..|+..
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-------------~~a~naLLk~LEep 146 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-------------KEAFNALLKTLEEP 146 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------HHHHHHHHHHHhcC
Confidence 00111 011100 000112335666555543 345799999999774 23467788888754
Q ss_pred CCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHhhCCCCCCHHHH
Q 002159 808 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADM 886 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~~~t~g~sGaDi 886 (958)
...+++|.+|+.++.+.+++.+ |+. .+.+.. ++.+....+++...+...+.-+ ..+..++..+ +-+.+++
T Consensus 147 ---p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~-ls~~el~~~L~~i~k~egi~id~~al~~La~~s--~G~lr~a 217 (486)
T PRK14953 147 ---PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSK-PTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS--EGGMRDA 217 (486)
T ss_pred ---CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHH
Confidence 3345566667778889899988 885 577774 7788888888888776554322 2356666662 3344555
Q ss_pred HHHHHHH
Q 002159 887 YALCADA 893 (958)
Q Consensus 887 ~~l~~~A 893 (958)
.+++..+
T Consensus 218 l~~Ldkl 224 (486)
T PRK14953 218 ASLLDQA 224 (486)
T ss_pred HHHHHHH
Confidence 5555544
No 188
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.99 E-value=5.7e-09 Score=122.25 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=109.9
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchh---hhHHHHHHHHHhcCCcEEEEcccccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESE---KNVRDIFQKARSARPCVIFFDELDSL 779 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese---~~vr~lf~~A~~~~P~ILfiDEiD~l 779 (958)
..+++|||++|+|||+|++++++++ +..++.+++.++...+...-. ..+.++.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999865 467888888888776554322 1222222222 34579999999988
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC-CC---CCChhhcCcCCccce--eeccCCCCHHHHHH
Q 002159 780 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR-PD---LIDPALLRPGRFDKL--LYVGVNSDVSYRER 853 (958)
Q Consensus 780 ~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr-p~---~ldpaLlrpgRfd~~--I~v~~ppd~~~r~~ 853 (958)
..+. .....+-.++..+.. . +.. +|.|+|+ |. .+++.|.. ||..- +.+. ||+.+.|..
T Consensus 219 ~~k~--------~~~e~lf~l~N~~~~---~-~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~-~pd~e~r~~ 282 (450)
T PRK14087 219 SYKE--------KTNEIFFTIFNNFIE---N-DKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQ-KLDNKTATA 282 (450)
T ss_pred cCCH--------HHHHHHHHHHHHHHH---c-CCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccC-CcCHHHHHH
Confidence 6432 112233334443332 1 223 4445555 43 45788888 88644 4455 589999999
Q ss_pred HHHHHHhhccC---CCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 002159 854 VLKALTRKFKL---LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAA 898 (958)
Q Consensus 854 Il~~~~~~~~~---~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~ 898 (958)
|++...+...+ -++.-++.||..+ +=+.+.+..+|.++...|.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~--~gd~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYY--SDDVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHh
Confidence 99998876432 2233467788774 3467888888887665554
No 189
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=5.7e-09 Score=120.89 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=102.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+..+||+||+||||||+|+++|+.++.. +++++... ......++++.+.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l 113 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNV 113 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHH
Confidence 3458999999999999999999998652 23333211 11233444444433
Q ss_pred h----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 Q----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
. .....|++|||+|.+.. ..+..+|+.+.+ ...++++|.
T Consensus 114 ~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKtLEE----------------------Pp~~viFIL 156 (484)
T PRK14956 114 KFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKTLEE----------------------PPAHIVFIL 156 (484)
T ss_pred HhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHHhhc----------------------CCCceEEEe
Confidence 2 22456999999998854 123444443322 157889999
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
+|+.+..+++.+++|. +.+.+..++..+-.+.++..+..... ..+ ++.+..+++.+.|- .+|.-.+..
T Consensus 157 aTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi---~~e-~eAL~~Ia~~S~Gd-~RdAL~lLe 224 (484)
T PRK14956 157 ATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENV---QYD-QEGLFWIAKKGDGS-VRDMLSFME 224 (484)
T ss_pred ecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCCh-HHHHHHHHH
Confidence 9999999999999986 56888888888777777777654332 222 44567777777764 344433433
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.99 E-value=4.7e-09 Score=123.59 Aligned_cols=156 Identities=14% Similarity=0.226 Sum_probs=102.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
.+++||||+|+|||+|++++++++ +..++.+++.+++..............|...- ..+.+|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 459999999999999999999987 55688888877654432222111112222221 246799999999886421
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC---CChhhhcccc--EE
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--HE 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~---Ld~alrrrf~--~e 547 (958)
....++..+++.+.+ .+..++|++...|.. +++.+++||. ..
T Consensus 228 ----------~~~~~l~~~~n~l~~-----------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~ 274 (450)
T PRK00149 228 ----------RTQEEFFHTFNALHE-----------------------AGKQIVLTSDRPPKELPGLEERLRSRFEWGLT 274 (450)
T ss_pred ----------HHHHHHHHHHHHHHH-----------------------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCee
Confidence 122344444444432 233456666655544 6788999985 47
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+.+..||.++|.+|++..+..... .+ .++.++.+|.++.|
T Consensus 275 v~i~~pd~~~r~~il~~~~~~~~~---~l-~~e~l~~ia~~~~~ 314 (450)
T PRK00149 275 VDIEPPDLETRIAILKKKAEEEGI---DL-PDEVLEFIAKNITS 314 (450)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHcCcCC
Confidence 899999999999999998865332 22 24457777777654
No 191
>PRK04195 replication factor C large subunit; Provisional
Probab=98.98 E-value=9.9e-09 Score=121.85 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
+..+.+..++....+ -.++..+||+||||+||||+++++|++++.+++++++++... ...++.....+.
T Consensus 21 ~~~~~l~~~l~~~~~-----g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~ 89 (482)
T PRK04195 21 KAKEQLREWIESWLK-----GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAA 89 (482)
T ss_pred HHHHHHHHHHHHHhc-----CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhh
Confidence 455667766654332 123567999999999999999999999999999999876321 223333333332
Q ss_pred c------CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 454 S------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 454 ~------~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
. ..+.+|+|||+|.+... ... ..+..++ .++. ..+..+|
T Consensus 90 ~~~sl~~~~~kvIiIDEaD~L~~~--------~d~---~~~~aL~-~~l~-----------------------~~~~~iI 134 (482)
T PRK04195 90 TSGSLFGARRKLILLDEVDGIHGN--------EDR---GGARAIL-ELIK-----------------------KAKQPII 134 (482)
T ss_pred ccCcccCCCCeEEEEecCcccccc--------cch---hHHHHHH-HHHH-----------------------cCCCCEE
Confidence 1 24679999999988641 011 1122222 2211 1223456
Q ss_pred EecCCCCCCCh-hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 528 AAADSSEGLPP-TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 528 aaTn~~~~Ld~-alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
.+||.+..+++ .++++ ...+.++.|+..+...+++..+..... ..+ ...++.++..+.| |+..++...
T Consensus 135 li~n~~~~~~~k~Lrsr-~~~I~f~~~~~~~i~~~L~~i~~~egi---~i~-~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 135 LTANDPYDPSLRELRNA-CLMIEFKRLSTRSIVPVLKRICRKEGI---ECD-DEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred EeccCccccchhhHhcc-ceEEEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC----CHHHHHHHH
Confidence 67788888877 56655 478999999999999999988865443 222 4457888887654 666665443
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.98 E-value=3.1e-10 Score=111.59 Aligned_cols=110 Identities=31% Similarity=0.483 Sum_probs=71.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeeccch------hhhccc---cchhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE------LINMYI---GESEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~------l~~~~~---Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
+|+|+||||||||+|++.+|..++.+++.+.++. +...|. +..+-.-..+.+.++ .++++||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 4899999999999999999999999998887654 333332 111100011111111 56899999998664
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhcCCCC----------CCC------cEEEEEecCCCC----CCChhhcCcCCc
Q 002159 781 PARGASGDSGGVMDRVVSQMLAEIDGLND----------SSQ------DLFIIGASNRPD----LIDPALLRPGRF 836 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~~ldg~~~----------~~~------~v~VI~aTNrp~----~ldpaLlrpgRf 836 (958)
..+++.|+..++.-.. ... ++.+|+|+|..+ .+++||++ ||
T Consensus 79 -------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3566666666553210 011 389999999998 89999999 87
No 193
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6.2e-09 Score=122.22 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecCcccccchhchHHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
.+.+++|+|||||||||+|+++|+.++. .+++++... ......++++.+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~ 108 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDA 108 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHH
Confidence 3446899999999999999999999864 344444321 1223445555555
Q ss_pred hhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
+.. ....+++|||+|.+.. .....++..+.+ ..+.+++|
T Consensus 109 ~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk~LE~----------------------p~~~vv~I 151 (472)
T PRK14962 109 VGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLKTLEE----------------------PPSHVVFV 151 (472)
T ss_pred HhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHHHHHh----------------------CCCcEEEE
Confidence 442 1346999999998854 112233332211 14567888
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
++|+.+..+++++++|+ +.+.+..|+..+...+++..+..... ..+ +..+..++..+.|
T Consensus 152 lattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi---~i~-~eal~~Ia~~s~G 210 (472)
T PRK14962 152 LATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGI---EID-REALSFIAKRASG 210 (472)
T ss_pred EEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHhCC
Confidence 88878889999999987 68999999999999888887754332 122 3446777776654
No 194
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.1e-10 Score=139.50 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=28.2
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
++.+.+++.+.|.||||+|||||+++|++...
T Consensus 282 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 44678899999999999999999999998753
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.98 E-value=2.2e-09 Score=103.46 Aligned_cols=122 Identities=31% Similarity=0.478 Sum_probs=83.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCc---eeeeccchhhhc--------------cccchhhhHHHHHHHHHhcCCcE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLN---FLSVKGPELINM--------------YIGESEKNVRDIFQKARSARPCV 770 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~---~i~v~~~~l~~~--------------~~Gese~~vr~lf~~A~~~~P~I 770 (958)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.++..|+...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5679999999999999999999999875 777776654322 22344566788899999888899
Q ss_pred EEEcccccccCCCCCCCCCcchHHHHHHH-----HHHhhcCCCCCCCcEEEEEecCC-CCCCChhhcCcCCccceeeccC
Q 002159 771 IFFDELDSLAPARGASGDSGGVMDRVVSQ-----MLAEIDGLNDSSQDLFIIGASNR-PDLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 771 LfiDEiD~l~~~r~~~~~~~~~~~rv~~~-----LL~~ldg~~~~~~~v~VI~aTNr-p~~ldpaLlrpgRfd~~I~v~~ 844 (958)
|||||++.+..... ...... ...... ...+..+|+++|. ....+..+.+ |++..+.++.
T Consensus 82 iiiDei~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 82 LILDEITSLLDAEQ---------EALLLLLEELRLLLLLK----SEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred EEEECCcccCCHHH---------HHHHHhhhhhHHHHHHH----hcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 99999998874321 011100 011111 2345778888886 3444445554 8999888864
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.98 E-value=4e-10 Score=135.47 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=41.6
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHH----HHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFV----KDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L----~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|++.++.++..+.+|+.. ..++ .+++++... ++.||+..+..
T Consensus 150 ~~~~~~~LSgG---e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 222 (529)
T PRK15134 150 LTDYPHQLSGG---ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222 (529)
T ss_pred HhhCCcccCHH---HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 45566899999 999999999999998888666543 3333 333332112 78999887654
No 197
>PRK08727 hypothetical protein; Validated
Probab=98.98 E-value=1.5e-08 Score=108.80 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=90.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 785 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~ 785 (958)
..++|+||+|||||+|+.+++.++ +...+.+...++. ..+.++++.... ..+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~--~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEG--RSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhc--CCEEEEeCcccccCChH-
Confidence 459999999999999999997765 4455555543322 233445555443 36999999998874321
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC---ChhhcCcCCc--cceeeccCCCCHHHHHHHHHHHHh
Q 002159 786 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI---DPALLRPGRF--DKLLYVGVNSDVSYRERVLKALTR 860 (958)
Q Consensus 786 ~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l---dpaLlrpgRf--d~~I~v~~ppd~~~r~~Il~~~~~ 860 (958)
....+-.++..+.. .+.-+|+.+.+.|..+ +|+|.+ || ...+.++ ||+.+.+..|++...+
T Consensus 111 -------~~~~lf~l~n~~~~----~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~-~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 111 -------DEVALFDFHNRARA----AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLP-VLDDVARAAVLRERAQ 176 (233)
T ss_pred -------HHHHHHHHHHHHHH----cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEec-CCCHHHHHHHHHHHHH
Confidence 12233344444321 1222444444456644 789988 87 4567777 4889999999997654
Q ss_pred h--ccCCCCcCHHHHHhhC
Q 002159 861 K--FKLLEDVSLYSIAKKC 877 (958)
Q Consensus 861 ~--~~~~~d~~l~~la~~~ 877 (958)
. +.++ +.-+..|++++
T Consensus 177 ~~~l~l~-~e~~~~La~~~ 194 (233)
T PRK08727 177 RRGLALD-EAAIDWLLTHG 194 (233)
T ss_pred HcCCCCC-HHHHHHHHHhC
Confidence 3 4432 33467888884
No 198
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=1.6e-09 Score=131.03 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=45.6
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCC-------CCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSD-------TGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D-------~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
.+...++|+| +++|+.|++.++.+++.+.+| .....|+.++.....+ ++.||+..+..
T Consensus 158 ~~~~~~LSgG---qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~ 225 (556)
T PRK11819 158 DAKVTKLSGG---ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN 225 (556)
T ss_pred cCchhhcCHH---HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 4455789999 999999999999988877444 4446777777777656 88999988764
No 199
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.98 E-value=4.8e-10 Score=134.52 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=41.8
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHH----HHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFV----KDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L----~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|++.++.+++.+.+|+.. ..++ .+++++... ++.||+..+..
T Consensus 162 ~~~~~~~LSgG---q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 162 ITHIARDLSGG---EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234 (520)
T ss_pred hhcCcccCCHH---HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 44556899999 999999999999998887555443 4444 444333222 78999887653
No 200
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.98 E-value=7.6e-09 Score=110.60 Aligned_cols=177 Identities=13% Similarity=0.076 Sum_probs=105.2
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
......++|+||+|||||+||++++.+. +..++.+++.++... +. ......+|+|||+|.+..
T Consensus 39 ~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD 104 (227)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc
Confidence 3456789999999999999999999875 557777776554311 11 122457999999998742
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCc--cceeeccCCCCHHHHHHHHH
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRF--DKLLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRf--d~~I~v~~ppd~~~r~~Il~ 856 (958)
. ....+..++..+. . .+..++|.+++.+. .+.+.|.. || ...+.++. ++.+.+..+++
T Consensus 105 ~----------~~~~L~~~~~~~~---~-~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~p-l~~~~~~~~l~ 167 (227)
T PRK08903 105 A----------QQIALFNLFNRVR---A-HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKP-LSDADKIAALK 167 (227)
T ss_pred h----------HHHHHHHHHHHHH---H-cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecC-CCHHHHHHHHH
Confidence 1 1222333333332 2 23333444544332 34577776 77 46888995 66667778887
Q ss_pred HHHhhccCCCC-cCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 857 ALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 857 ~~~~~~~~~~d-~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
.+.....+.-+ .-+..|+..+ .=+.+++.++++.-...|.... ..||.....+++.
T Consensus 168 ~~~~~~~v~l~~~al~~L~~~~--~gn~~~l~~~l~~l~~~~~~~~------------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 168 AAAAERGLQLADEVPDYLLTHF--RRDMPSLMALLDALDRYSLEQK------------------RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHhC------------------CCCCHHHHHHHHh
Confidence 76654433222 2356666653 3355666666665333332221 2577777777765
No 201
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.98 E-value=7.1e-09 Score=120.54 Aligned_cols=156 Identities=14% Similarity=0.215 Sum_probs=100.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
.+++||||+|+|||+|++++++++ +..++.+++.+++..........-...|.... ..+.+|+|||++.+..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCCH
Confidence 458999999999999999999987 56788888876654332211100011122111 135799999999886421
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC---CChhhhccccE--E
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH--E 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~---Ld~alrrrf~~--e 547 (958)
....++..+++.+.+ .+..+||++...|.. +++.+++||.. .
T Consensus 216 ----------~~~~~l~~~~n~~~~-----------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~ 262 (405)
T TIGR00362 216 ----------RTQEEFFHTFNALHE-----------------------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLV 262 (405)
T ss_pred ----------HHHHHHHHHHHHHHH-----------------------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeE
Confidence 122344444444321 233455655555543 56788999864 6
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+.++.||.++|.+|++..+..... .++ ++.++.+|.+..+
T Consensus 263 v~i~~pd~~~r~~il~~~~~~~~~---~l~-~e~l~~ia~~~~~ 302 (405)
T TIGR00362 263 VDIEPPDLETRLAILQKKAEEEGL---ELP-DEVLEFIAKNIRS 302 (405)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhcCC
Confidence 899999999999999999876433 222 4557777877655
No 202
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.97 E-value=3.4e-09 Score=121.42 Aligned_cols=122 Identities=25% Similarity=0.479 Sum_probs=79.0
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCc-------eeeec----cchhhhcc----ccch--hhhHHHHHHHHHhc--
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLN-------FLSVK----GPELINMY----IGES--EKNVRDIFQKARSA-- 766 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------~i~v~----~~~l~~~~----~Ges--e~~vr~lf~~A~~~-- 766 (958)
..+++++|+||||||||++|+.+|..+... ++.+. ..+++..+ +|-. ...+.++.+.|+..
T Consensus 192 ~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE 271 (459)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhccc
Confidence 346789999999999999999999887431 12222 12232222 1111 11234455666643
Q ss_pred CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhc--------------------CCCCCCCcEEEEEecCCCC--
Q 002159 767 RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID--------------------GLNDSSQDLFIIGASNRPD-- 824 (958)
Q Consensus 767 ~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ld--------------------g~~~~~~~v~VI~aTNrp~-- 824 (958)
.|++|||||++.... .++...++..|+ .+ ....++.||||+|..|
T Consensus 272 ~~~vliIDEINRani------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f-~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 272 KKYVFIIDEINRANL------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERF-YVPENVYIIGLMNTADRS 338 (459)
T ss_pred CCcEEEEehhhccCH------------HHhhhhhhhhccccccccccceeeeccccccccc-cCCCCeEEEEecCccccc
Confidence 589999999986643 233344444333 11 1246899999999998
Q ss_pred --CCChhhcCcCCccceeecc
Q 002159 825 --LIDPALLRPGRFDKLLYVG 843 (958)
Q Consensus 825 --~ldpaLlrpgRfd~~I~v~ 843 (958)
.+|.||+| ||. .|.+.
T Consensus 339 ~~~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 339 LAVVDYALRR--RFS-FIDIE 356 (459)
T ss_pred hhhccHHHHh--hhh-eEEec
Confidence 89999999 995 45665
No 203
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=3.4e-09 Score=124.19 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=111.4
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc---------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------------- 735 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--------------- 735 (958)
+.+|+++.|.+.++..+...+. .+ +.+..+|||||+|+|||++|+++|..+...
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~----------~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALR----------FN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 3579999999998877655442 11 224568999999999999999999977432
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++... .| -..++++-+... .....|++|||+|.+. ....+.|+
T Consensus 82 ~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------~~~~n~LL 142 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------KEAFNSLL 142 (451)
T ss_pred HHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-------------HHHHHHHH
Confidence 222322110 11 123444333222 2456799999998885 23467888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhh
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 876 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~ 876 (958)
..|+.. ...+.+|++||.+..|.+++.+ |+. .+++.. ++.++-..+++...++.... ++..+..++..
T Consensus 143 k~lEep---~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~-l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 143 KTLEEP---PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKR-IPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHhhcC---CCCceEEEEeCChHhcchHHHH--hce-EEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888864 3466677777888999999988 885 578874 66676677777666554332 22345667766
No 204
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.97 E-value=2.9e-10 Score=135.99 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=40.7
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc--CC----CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT--SG----FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t--~G----fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|++.++.+++.+.+|+.. ..++.++..+. .| ++.||+..+..
T Consensus 134 ~~~~~~~LSgG---~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 205 (510)
T PRK15439 134 LDSSAGSLEVA---DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQ 205 (510)
T ss_pred ccCChhhCCHH---HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 34555789999 999999999999998887555433 33443333221 23 78999887654
No 205
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.6e-08 Score=115.11 Aligned_cols=176 Identities=21% Similarity=0.266 Sum_probs=115.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCc-----eeeeccchhhhcc---------------ccchh-hhHHHHHHHHHh-
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLN-----FLSVKGPELINMY---------------IGESE-KNVRDIFQKARS- 765 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~-----~i~v~~~~l~~~~---------------~Gese-~~vr~lf~~A~~- 765 (958)
+.++++|||||||||.+++.++.++.-. ++++++...-+.| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4569999999999999999999988544 7888886654432 12221 223333333333
Q ss_pred cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCc-cceee
Q 002159 766 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRF-DKLLY 841 (958)
Q Consensus 766 ~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRf-d~~I~ 841 (958)
...-|+++||+|.|..+.+ .++-.|+...+.. ..+|.+|+.+|..+ .+||-+.+ +| ...|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc----------hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4556999999999985432 4566666554433 35688999999875 78888876 55 34588
Q ss_pred ccCCCCHHHHHHHHHHHHhhccCC---CCcCHHHHHhhCCCCCCH---HHHHHHHHHHHHHHHHHH
Q 002159 842 VGVNSDVSYRERVLKALTRKFKLL---EDVSLYSIAKKCPPNFTG---ADMYALCADAWFHAAKRK 901 (958)
Q Consensus 842 v~~ppd~~~r~~Il~~~~~~~~~~---~d~~l~~la~~~t~g~sG---aDi~~l~~~A~~~A~~r~ 901 (958)
|| |.+.++-..|++...+..-.. .+--+.-+|.. .+..+ +---.+|+.|+..|-++.
T Consensus 187 F~-pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~--~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FP-PYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL--VAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eC-CCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH--HHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 98 599999999998887643111 11113333433 23333 334477888888887664
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-09 Score=129.95 Aligned_cols=152 Identities=24% Similarity=0.423 Sum_probs=117.5
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhhh--ccccchhhhHHHHHHHHHhcCCcEEEE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELIN--MYIGESEKNVRDIFQKARSARPCVIFF 773 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~~--~~~Gese~~vr~lf~~A~~~~P~ILfi 773 (958)
+...+-+|+|+||+|||.++..+|... +..+++++...+.. +|-|+.|+.++.+.+..++..+.||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 445678899999999999999999866 45678888777764 699999999999999999988999999
Q ss_pred cccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-----CCChhhcCcCCccceeeccCCCCH
Q 002159 774 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDV 848 (958)
Q Consensus 774 DEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-----~ldpaLlrpgRfd~~I~v~~ppd~ 848 (958)
||+|.+.+..+..|+ ..-...++...|. .+.+-+||||..-+ .-|+||-| ||. .|+|.- |+.
T Consensus 269 DEiHtiVGAG~~~G~-a~DAaNiLKPaLA--------RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~E-Ps~ 335 (786)
T COG0542 269 DEIHTIVGAGATEGG-AMDAANLLKPALA--------RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDE-PSV 335 (786)
T ss_pred echhhhcCCCccccc-ccchhhhhHHHHh--------cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCC-CCH
Confidence 999999976544332 1112233444332 45678899987554 56899999 997 567885 899
Q ss_pred HHHHHHHHHHHhhccCCCCcCH
Q 002159 849 SYRERVLKALTRKFKLLEDVSL 870 (958)
Q Consensus 849 ~~r~~Il~~~~~~~~~~~d~~l 870 (958)
+.-..||+.+-.++.....|.+
T Consensus 336 e~ti~ILrGlk~~yE~hH~V~i 357 (786)
T COG0542 336 EDTIAILRGLKERYEAHHGVRI 357 (786)
T ss_pred HHHHHHHHHHHHHHHHccCcee
Confidence 9999999999888776666543
No 207
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.96 E-value=5e-08 Score=113.03 Aligned_cols=194 Identities=21% Similarity=0.226 Sum_probs=114.1
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccc----------h-
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASS----------E- 438 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~----------~- 438 (958)
..+.+...+.+.+.. ..+.+++|+||||+|||++++.+++++ +..++.++|....+.+ .
T Consensus 38 e~~~l~~~l~~~~~~-----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~ 112 (394)
T PRK00411 38 QIEELAFALRPALRG-----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFG 112 (394)
T ss_pred HHHHHHHHHHHHhCC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcC
Confidence 445566666554431 223468999999999999999999887 4678999986532210 0
Q ss_pred ------h-chHHHHHHHHHHhh-cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCC
Q 002159 439 ------R-KTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGY 510 (958)
Q Consensus 439 ------g-~~e~~l~~~f~~A~-~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~ 510 (958)
+ .....+..+.+... ...+.+|+|||+|.+... . ....+..+++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~---~--------~~~~l~~l~~~~~~------------- 168 (394)
T PRK00411 113 HPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK---E--------GNDVLYSLLRAHEE------------- 168 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc---C--------CchHHHHHHHhhhc-------------
Confidence 1 11222333333322 235689999999998721 0 01223333322111
Q ss_pred CchhhhhhhhcCcEEEEEecCCCC---CCChhhhcccc-EEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHh
Q 002159 511 FPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDII 586 (958)
Q Consensus 511 ~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf~-~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la 586 (958)
....++.+|+++|... .+++.++++|. ..+.+++++.++..+|++..+... +..+.-.+..++.++
T Consensus 169 --------~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~ 238 (394)
T PRK00411 169 --------YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIA 238 (394)
T ss_pred --------cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHH
Confidence 0123688888887653 46777777763 578999999999999999887432 111222344566666
Q ss_pred hhcCCCChhhHH---HHHHHHHHHH
Q 002159 587 GQTSGFMPRDLH---ALVADAGANL 608 (958)
Q Consensus 587 ~~t~Gfv~~DL~---~Lv~eA~~~a 608 (958)
+.+.+. .+|+. .++..|...+
T Consensus 239 ~~~~~~-~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 239 DLTARE-HGDARVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHh-cCcHHHHHHHHHHHHHHH
Confidence 666442 22443 4445444433
No 208
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=3.5e-09 Score=126.70 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=120.2
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-------------- 735 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~-------------- 735 (958)
.+..|+++.|.+.+++.+...+. .+ +.+..+|||||+|+|||++|+++|..+...
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~----------~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIE----------SN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 34579999999999887765542 11 224569999999999999999999987532
Q ss_pred ----------eeeeccchhhhccccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 736 ----------FLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 736 ----------~i~v~~~~l~~~~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
++.+++.. ...-..++++.+.+. .....|++|||+|.+. ....+.||
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-------------~~a~naLL 140 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------------NSAFNALL 140 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------HHHHHHHH
Confidence 22221110 011234555554433 3455799999999884 34578888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
..|+.. ...+++|++|+.++.|.+++++ |+. .+.+.. ++.+....+++...+...+. .+..+..||+.. .
T Consensus 141 K~LEep---p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~-l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s-~- 211 (563)
T PRK06647 141 KTIEEP---PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRL-LSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS-T- 211 (563)
T ss_pred HhhccC---CCCEEEEEecCChHHhHHHHHH--hce-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-
Confidence 888853 3567777777888999999988 886 467774 56677777777666544332 233456677763 3
Q ss_pred CCHHHHHHHHHH
Q 002159 881 FTGADMYALCAD 892 (958)
Q Consensus 881 ~sGaDi~~l~~~ 892 (958)
-+.+++.+++..
T Consensus 212 GdlR~alslLdk 223 (563)
T PRK06647 212 GSVRDAYTLFDQ 223 (563)
T ss_pred CCHHHHHHHHHH
Confidence 355565555544
No 209
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.7e-08 Score=122.19 Aligned_cols=175 Identities=18% Similarity=0.267 Sum_probs=111.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceee-e---------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS-V--------- 739 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~-v--------- 739 (958)
....|+++.|.+.++..|...+.. + +-...+||+||+|+|||++|+++|..+...... .
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 345789999999988877655421 1 124579999999999999999999988652110 0
Q ss_pred --------ccchhh--hccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhc
Q 002159 740 --------KGPELI--NMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID 805 (958)
Q Consensus 740 --------~~~~l~--~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ld 805 (958)
..++++ ....+..-..+|++...+.. ....|++|||+|.|. ....+.||+.|+
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-------------~~a~naLLK~LE 146 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-------------TAAFNALLKTLE 146 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-------------HHHHHHHHHHHh
Confidence 000110 11112233567888877653 234699999999884 346788899988
Q ss_pred CCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc--cCCCCcCHHHHHhh
Q 002159 806 GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF--KLLEDVSLYSIAKK 876 (958)
Q Consensus 806 g~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~--~~~~d~~l~~la~~ 876 (958)
.. ...+++|++|++++.+-+.+++ |+. .+.|.. +..++-...++...++. .+.. ..+..+++.
T Consensus 147 eP---p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~-l~~~ei~~~L~~ia~kegi~is~-~al~~La~~ 211 (620)
T PRK14948 147 EP---PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRR-IPLEAMVQHLSEIAEKESIEIEP-EALTLVAQR 211 (620)
T ss_pred cC---CcCeEEEEEeCChhhhhHHHHh--hee-EEEecC-CCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence 53 3566777777888888899988 885 456664 44444444444444433 2222 235666666
No 210
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=1.4e-09 Score=110.99 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=76.3
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCC----ceeeeccchhhhccccchhhhHHHHHHHH----HhcCCcEEEEccccc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSL----NFLSVKGPELINMYIGESEKNVRDIFQKA----RSARPCVIFFDELDS 778 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~----~~i~v~~~~l~~~~~Gese~~vr~lf~~A----~~~~P~ILfiDEiD~ 778 (958)
|-..++|+||+|+|||.+|+++|..+.. +++.++++++.. -++.+..+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4557999999999999999999999996 999999988866 111122222322211 111123999999999
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCC
Q 002159 779 LAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD 824 (958)
Q Consensus 779 l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~ 824 (958)
+.+..+. ...-....+.+.||+.||+-. -..+++++|+|+|--.
T Consensus 80 a~~~~~~--~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSG--GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTT--CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccc--cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9986222 222233578888998887421 1235799999999655
No 211
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.95 E-value=1.8e-08 Score=117.38 Aligned_cols=146 Identities=19% Similarity=0.305 Sum_probs=98.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh----cCCCeEEeecchhhhhhccc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s 473 (958)
.+++|+|||||||||+++++|+.++..+..+++.. .....++.+++.+. .....++||||+|.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-- 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-- 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--
Confidence 36999999999999999999999999999998753 12334555555543 225689999999987541
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecC--CCCCCChhhhccccEEEEcC
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD--SSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn--~~~~Ld~alrrrf~~eIsig 551 (958)
....++ ..++ .+.+++|++|+ ....+++++++|+ ..+.+.
T Consensus 108 -------------~q~~LL-~~le-----------------------~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~ 149 (413)
T PRK13342 108 -------------QQDALL-PHVE-----------------------DGTITLIGATTENPSFEVNPALLSRA-QVFELK 149 (413)
T ss_pred -------------HHHHHH-HHhh-----------------------cCcEEEEEeCCCChhhhccHHHhccc-eeeEeC
Confidence 111122 2211 35577777663 3457889999998 789999
Q ss_pred CCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 552 ~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.|++++...+++..+.....-....+ +..++.++..+.|
T Consensus 150 ~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G 188 (413)
T PRK13342 150 PLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG 188 (413)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC
Confidence 99999999999887654211000122 3446666666544
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.94 E-value=9.8e-09 Score=112.26 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=90.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------ccccchhchHHH-HHH-------------------HHH
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASSERKTSAA-LAQ-------------------AFN 450 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~------l~s~~~g~~e~~-l~~-------------------~f~ 450 (958)
+..++|+||||||||++|+++|..+|.+++.++|.. +++.+.+..... +.+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 345999999999999999999999999999998864 222221111111 010 111
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhh-hhhcCcEEEEEe
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE-KICRQQVLLVAA 529 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~-~~~~~~ViVIaa 529 (958)
.|. ..+.++++||++.+.+ ++...|..+++.-. -...+ .....+ .....++.||+|
T Consensus 101 ~A~-~~g~~lllDEi~r~~~----------------~~q~~Ll~~Le~~~----~~i~~--~~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 101 LAV-REGFTLVYDEFTRSKP----------------ETNNVLLSVFEEGV----LELPG--KRGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHH-HcCCEEEEcchhhCCH----------------HHHHHHHHHhcCCe----EEccC--CCCCCceEecCCCCEEEEe
Confidence 122 2357999999997643 22333333332100 00000 000000 012457789999
Q ss_pred cCCCC-----CCChhhhccccEEEEcCCCCHHHHHHHHHHhc
Q 002159 530 ADSSE-----GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 530 Tn~~~-----~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll 566 (958)
+|... .+++++++|| ..+.++.|+.++-.+|++.+.
T Consensus 158 sN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 99753 5688999998 679999999999999998765
No 213
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.94 E-value=6.6e-09 Score=116.69 Aligned_cols=131 Identities=19% Similarity=0.333 Sum_probs=89.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh-cCCCeEEeecchhhhhhcccCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNE 475 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~-~~~P~IL~iDeid~L~~~~s~~ 475 (958)
+..++|+||||+|||+++++++++++.+++.+++.+ .. .......+........ ...+.+++|||+|.+..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----- 114 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----- 114 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----
Confidence 345677999999999999999999999999999876 21 1111111222111111 12578999999987732
Q ss_pred CCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCH
Q 002159 476 SLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTE 555 (958)
Q Consensus 476 ~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde 555 (958)
.+....+..+++.. ...+.+|.+||.+..+++.+++|+ ..+.++.|+.
T Consensus 115 ----------~~~~~~L~~~le~~---------------------~~~~~~Ilt~n~~~~l~~~l~sR~-~~i~~~~p~~ 162 (316)
T PHA02544 115 ----------ADAQRHLRSFMEAY---------------------SKNCSFIITANNKNGIIEPLRSRC-RVIDFGVPTK 162 (316)
T ss_pred ----------HHHHHHHHHHHHhc---------------------CCCceEEEEcCChhhchHHHHhhc-eEEEeCCCCH
Confidence 01122333333211 355678889999999999999998 5789999999
Q ss_pred HHHHHHHHHhcc
Q 002159 556 QQRVEMLSQLLQ 567 (958)
Q Consensus 556 ~qR~~Il~~ll~ 567 (958)
+++.++++.++.
T Consensus 163 ~~~~~il~~~~~ 174 (316)
T PHA02544 163 EEQIEMMKQMIV 174 (316)
T ss_pred HHHHHHHHHHHH
Confidence 999988776543
No 214
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.94 E-value=1.5e-08 Score=111.86 Aligned_cols=175 Identities=18% Similarity=0.247 Sum_probs=94.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~-------~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
|.+..|..+.|+|.+|+|||-.+.++.+-+..+ -+..++.++... ++..++ ..+.+.-+.||-+-
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~----se~~lr----~iRG~~I~MIFQEP 102 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA----SERQLR----GVRGNKIGMIFQEP 102 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC----CHHHHh----hhcccceEEEeccc
Confidence 445566679999999999999999999887431 345555555532 233332 23344445555554
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhh--hc
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI--RR 542 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~al--rr 542 (958)
..+|-+. ..+...+.+.++--.. + .......+.-... ..-+++..- ..
T Consensus 103 MtSLNPl----------~tIg~Qi~E~l~~Hrg-~--------~~~~Ar~r~lelL-----------~~VgI~~p~~rl~ 152 (534)
T COG4172 103 MTSLNPL----------HTIGKQLAEVLRLHRG-L--------SRAAARARALELL-----------ELVGIPEPEKRLD 152 (534)
T ss_pred ccccCcH----------hHHHHHHHHHHHHHhc-c--------cHHHHHHHHHHHH-----------HHcCCCchhhhhh
Confidence 4444331 1122223332221100 0 0000000000000 112444333 34
Q ss_pred cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC----CChhhHHHHHHHHHHH
Q 002159 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG----FMPRDLHALVADAGAN 607 (958)
Q Consensus 543 rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G----fv~~DL~~Lv~eA~~~ 607 (958)
.|.|++|+| ++||+-|+-++..+++.|..|+.+ .. .|.++-+ -.| |+.||+.-+-+-|..-
T Consensus 153 ~yPHeLSGG---qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 153 AYPHELSGG---QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hCCcccCcc---hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHhhhhE
Confidence 799999999 999999999999998888555443 11 2233322 233 8899998665544433
Q ss_pred H
Q 002159 608 L 608 (958)
Q Consensus 608 a 608 (958)
+
T Consensus 229 ~ 229 (534)
T COG4172 229 Y 229 (534)
T ss_pred E
Confidence 3
No 215
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.93 E-value=2.7e-09 Score=128.92 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=45.2
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCC-------CCCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTS-------DTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~-------D~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
.+...++|+| +++|+.|++.++.+++.+.+ |.....++.++.....+ ++.||+..+..
T Consensus 156 ~~~~~~LSgG---qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 156 DADVTKLSGG---ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDN 223 (552)
T ss_pred cCchhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 3445789999 99999999999998887744 44446777777776655 88999988764
No 216
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=2.9e-08 Score=119.32 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccch-----
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSE----- 438 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~~----- 438 (958)
+..+.+...+.+.+.. ..++..++|+|+||||||++++.+..++ ...+++|||..+...+.
T Consensus 762 eEIeeLasfL~paIkg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI 837 (1164)
T PTZ00112 762 KEIKEVHGFLESGIKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVL 837 (1164)
T ss_pred HHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHH
Confidence 4456666666665542 1223335699999999999999998876 25678999965332210
Q ss_pred ------------hchHHHHHHHHHHhh--cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 439 ------------RKTSAALAQAFNTAQ--SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 439 ------------g~~e~~l~~~f~~A~--~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
......+...|.... .....||+|||+|.|... ....+..+++...
T Consensus 838 ~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnLFR~~~-------- 897 (1164)
T PTZ00112 838 YKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTLFDWPT-------- 897 (1164)
T ss_pred HHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHHHHHhh--------
Confidence 112345556666542 224579999999998751 0112222222110
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCC---CCCCChhhhccccE-EEEcCCCCHHHHHHHHHHhccC
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADS---SEGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~---~~~Ld~alrrrf~~-eIsig~Pde~qR~~Il~~ll~~ 568 (958)
....+++|||++|. +..+++.+++|+.. ++.+++++..|+.+|++..+..
T Consensus 898 --------------~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 898 --------------KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred --------------ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 12457999999986 45667888888754 5889999999999999988764
No 217
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.92 E-value=5.4e-09 Score=126.49 Aligned_cols=87 Identities=31% Similarity=0.408 Sum_probs=59.2
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce----eee-c--
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF----LSV-K-- 740 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~----i~v-~-- 740 (958)
.+|..-|+++.|.++.+..+...+ ..+.+++|+||||||||+++++++..++.+. +.+ +
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~--------------~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~ 76 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAA--------------KQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE 76 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHH--------------HcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC
Confidence 456677888999888776554432 2245899999999999999999999997552 112 1
Q ss_pred ---cchhhhccccchhhhHHHHHHHHHhcCC
Q 002159 741 ---GPELINMYIGESEKNVRDIFQKARSARP 768 (958)
Q Consensus 741 ---~~~l~~~~~Gese~~vr~lf~~A~~~~P 768 (958)
.+-+...+.|..++.++..|..|++..|
T Consensus 77 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 107 (608)
T TIGR00764 77 DPNMPRIVEVPAGEGREIVEDYKKKAFKQPS 107 (608)
T ss_pred CCchHHHHHHHHhhchHHHHHHHHHhhcccc
Confidence 1223344566677777777776655443
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.92 E-value=3.4e-10 Score=135.17 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+.+++.+.|.||||+|||||+++|++...
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc
Confidence 44678899999999999999999999998763
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.92 E-value=6.4e-10 Score=132.85 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=28.2
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
++.+.++..+.|.||||+|||||+++|++...
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 34678889999999999999999999998764
No 220
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=6.3e-09 Score=122.82 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=122.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC---------------
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--------------- 734 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--------------- 734 (958)
.+.+|+++.|.+.+++.+...+. .+ +.+..+|||||+|+|||++|+++|..+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~----------~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALD----------NN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH----------cC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34579999999999887765541 11 23455799999999999999999988732
Q ss_pred ---------ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 735 ---------NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 735 ---------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
.++.+++..- ..-..+|++...+.. ....|++|||+|.+. ....+.||
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-------------~~A~NALL 138 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-------------KEAFNALL 138 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHHHHH
Confidence 1222221100 012356666554332 223599999998885 34677888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g 880 (958)
..|+.. ...+.+|.+|+.+..|.++++. |+. .++|.. ++.+.-...++...++.... .+..+..+++.. |
T Consensus 139 K~LEEp---p~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~-Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s--~ 209 (535)
T PRK08451 139 KTLEEP---PSYVKFILATTDPLKLPATILS--RTQ-HFRFKQ-IPQNSIISHLKTILEKEGVSYEPEALEILARSG--N 209 (535)
T ss_pred HHHhhc---CCceEEEEEECChhhCchHHHh--hce-eEEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 888865 3456666677788999999998 874 778875 55666666666655543322 233466777763 3
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002159 881 FTGADMYALCADAWFHA 897 (958)
Q Consensus 881 ~sGaDi~~l~~~A~~~A 897 (958)
-+.+++.+++..|...+
T Consensus 210 GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 210 GSLRDTLTLLDQAIIYC 226 (535)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 46677777776655443
No 221
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=5.1e-09 Score=121.23 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=112.5
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce-e----------e
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF-L----------S 738 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~-i----------~ 738 (958)
.+..|+++.|.+.+++.+...+. .+ +.+..++|+||+|+||||+|+++|..+...- . .
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~----------~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLR----------MG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHH----------hC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 34578999999998887654431 11 2355699999999999999999999885521 0 0
Q ss_pred e-------------ccchhhhccccch---hhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHH
Q 002159 739 V-------------KGPELINMYIGES---EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVS 798 (958)
Q Consensus 739 v-------------~~~~l~~~~~Ges---e~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~ 798 (958)
- +.+++. .+-|.. -..++++.+.+. .....|++|||+|.+. ....+
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------~~~~~ 145 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------IAAFN 145 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-------------HHHHH
Confidence 0 000000 011211 234566555542 1233699999998885 22456
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhC
Q 002159 799 QMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKC 877 (958)
Q Consensus 799 ~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~ 877 (958)
.|++.|+.. ....++|++|+++..+-+++.+ |+. .+.+.. ++.++-..+++...+.... -.+..+..++..+
T Consensus 146 ~LLk~LEep---~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~-l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 146 AFLKTLEEP---PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKR-IPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHhcC---CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 788888754 2345555566677888888887 775 677774 5566666666665554332 1233356666663
Q ss_pred CCCCCHHHHHHHHHH
Q 002159 878 PPNFTGADMYALCAD 892 (958)
Q Consensus 878 t~g~sGaDi~~l~~~ 892 (958)
|-+-..+.+.+..
T Consensus 219 --~g~lr~a~~~L~k 231 (397)
T PRK14955 219 --QGSMRDAQSILDQ 231 (397)
T ss_pred --CCCHHHHHHHHHH
Confidence 2233444444443
No 222
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.90 E-value=5.6e-10 Score=133.05 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=28.1
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+.+++.+.|.||||+|||||+++|++...
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 299 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc
Confidence 34678899999999999999999999998763
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=98.90 E-value=1.4e-08 Score=108.90 Aligned_cols=148 Identities=12% Similarity=0.170 Sum_probs=91.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~ 474 (958)
..++|+||||||||+|++++|+++ +.....++.... .......++... ...+++|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 348999999999999999999986 344444444211 111112233332 45799999999876411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCC---hhhhccc--cEEEE
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLP---PTIRRCF--SHEIS 549 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld---~alrrrf--~~eIs 549 (958)
.....+..++++..+ .+..+++++++..|..++ +.+++|+ ...+.
T Consensus 108 --------~~~~~l~~l~n~~~~----------------------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~ 157 (229)
T PRK06893 108 --------EWELAIFDLFNRIKE----------------------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred --------HHHHHHHHHHHHHHH----------------------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeee
Confidence 011233344433321 133456677777777665 7888875 45889
Q ss_pred cCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
++.||.++|.+|++..+..... ..+ ++.+..++++..|
T Consensus 158 l~~pd~e~~~~iL~~~a~~~~l---~l~-~~v~~~L~~~~~~ 195 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQRGI---ELS-DEVANFLLKRLDR 195 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhccC
Confidence 9999999999999987754332 122 3445666666553
No 224
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.90 E-value=1e-08 Score=114.69 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc----ccccchhchHHHHHHHHHHhhcCCCeEE----eecchh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN----LMASSERKTSAALAQAFNTAQSYSPTIL----LLRDFD 466 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~----l~s~~~g~~e~~l~~~f~~A~~~~P~IL----~iDeid 466 (958)
++|.-+.|.|+||.||||.+|.+|+++-++++..+.+. ++..+.| ..++..|.......-.++ ++|.+-
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrG---tELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG---TELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhh---hHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 44556999999999999999999999999888876532 2222221 224444554433221111 344433
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
.... +.+..+|+...+ .|.. ++.+ ...+|. .+..|-..
T Consensus 175 k~~K---------------G~v~elLk~~de----------~g~~----devv------------e~l~L~-nvl~r~v~ 212 (591)
T COG1245 175 KVVK---------------GKVGELLKKVDE----------RGKF----DEVV------------ERLGLE-NVLDRDVS 212 (591)
T ss_pred HHhc---------------chHHHHHHhhhh----------cCcH----HHHH------------HHhcch-hhhhhhhh
Confidence 2221 233333333211 0000 0000 011222 23445557
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhh--cCCCChhhHHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQ--TSGFMPRDLHALVADA 604 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~--t~Gfv~~DL~~Lv~eA 604 (958)
++|+| +-||++|+..+++..+...-|..+ ...+.++++. +-=.+-||+.-|.--+
T Consensus 213 ~LSGG---ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 213 ELSGG---ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred hcCch---HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence 89999 999999999999987765334322 1223444443 2226788888887433
No 225
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=4.8e-08 Score=117.28 Aligned_cols=165 Identities=17% Similarity=0.257 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I 428 (958)
+.+++.|...+. . -+.+..+||+||+|+||||+++++|+.++.. ++++
T Consensus 22 e~Vv~~L~~aL~----~----gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 22 EHVVRALTHALD----G----GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHHHHHHHHh----c----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 345566655543 1 1234457999999999999999999998642 2333
Q ss_pred ecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 429 ~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
+..+ ......++.+++.+.. ....|++|||+|.|.. ..+..+|+.+.+
T Consensus 94 DAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKtLEE------- 145 (830)
T PRK07003 94 DAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKTLEE------- 145 (830)
T ss_pred cccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHHHHh-------
Confidence 2221 1223445566655432 2347999999998854 123344443322
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
....+.||.+||.+..|.+.+++|+ ..+.+..++.++-.+.++..+..... .. .++.+..
T Consensus 146 ---------------PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI---~i-d~eAL~l 205 (830)
T PRK07003 146 ---------------PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERI---AF-EPQALRL 205 (830)
T ss_pred ---------------cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 1567899999999999999999986 78899999999988888887754332 11 2345677
Q ss_pred HhhhcCCCC
Q 002159 585 IIGQTSGFM 593 (958)
Q Consensus 585 la~~t~Gfv 593 (958)
+++.+.|-.
T Consensus 206 IA~~A~Gsm 214 (830)
T PRK07003 206 LARAAQGSM 214 (830)
T ss_pred HHHHcCCCH
Confidence 777777743
No 226
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=3e-08 Score=119.52 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=115.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCcee-----------e
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL-----------S 738 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i-----------~ 738 (958)
.+..|+++.|.+.+++.+...+ ..+ +-+..+||+||+|+||||+|+++|..+...-- .
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i----------~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSL----------RMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHH----------HcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 3457899999999888765543 111 23456999999999999999999998865210 0
Q ss_pred e-----------cc--chhhhccccch---hhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHH
Q 002159 739 V-----------KG--PELINMYIGES---EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVS 798 (958)
Q Consensus 739 v-----------~~--~~l~~~~~Ges---e~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~ 798 (958)
- .+ .++ ..+-|.+ -..++++.+.+. .....|++|||+|.+. ....+
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-------------~~a~n 145 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-------------TAAFN 145 (620)
T ss_pred CCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------HHHHH
Confidence 0 00 000 0011211 234666555542 2344699999998885 23467
Q ss_pred HHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhC
Q 002159 799 QMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKC 877 (958)
Q Consensus 799 ~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~ 877 (958)
.||+.|+.. ...+++|++|+.++.|-+.+.+ |+ ..+.+.. ++.++-..+++...++..+ -.+..++.++..+
T Consensus 146 aLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~-l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 146 AFLKTLEEP---PPHAIFIFATTELHKIPATIAS--RC-QRFNFKR-IPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHHhCC---CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 888888864 2345555566777888888887 77 4677774 6666666666665554332 2334467777773
Q ss_pred CCCCCHHHHHHHHH
Q 002159 878 PPNFTGADMYALCA 891 (958)
Q Consensus 878 t~g~sGaDi~~l~~ 891 (958)
|-+..++.+.+.
T Consensus 219 --~Gdlr~al~eLe 230 (620)
T PRK14954 219 --QGSMRDAQSILD 230 (620)
T ss_pred --CCCHHHHHHHHH
Confidence 334444444433
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=98.89 E-value=2.6e-08 Score=107.02 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=99.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARG 784 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~ 784 (958)
...++|+||+|+|||+|++++++++ +..++.++..++... ...+.+..+.. .+|+|||++.+.++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCChH
Confidence 3578999999999999999998764 567777877776542 12334444433 5999999998864321
Q ss_pred CCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCcc--ceeeccCCCCHHHHHHHHHHHH
Q 002159 785 ASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFD--KLLYVGVNSDVSYRERVLKALT 859 (958)
Q Consensus 785 ~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~~~ 859 (958)
....+-.+++. ... .+..++++++..|.. ..|.|.+ ||. ..+.+. ||+.+.+..|++...
T Consensus 115 --------~~~~Lf~l~n~---~~~-~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~-~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 --------WEEALFHLFNR---LRD-SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMR-GLSDEDKLRALQLRA 179 (234)
T ss_pred --------HHHHHHHHHHH---HHh-cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecC-CCCHHHHHHHHHHHH
Confidence 11223333333 222 245667766666653 3688888 985 444555 368888999988544
Q ss_pred hh--ccCCCCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 860 RK--FKLLEDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 860 ~~--~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
.. +.+. +.-++.|++++ .-+++.+..++..
T Consensus 180 ~~~~~~l~-~ev~~~L~~~~--~~d~r~l~~~l~~ 211 (234)
T PRK05642 180 SRRGLHLT-DEVGHFILTRG--TRSMSALFDLLER 211 (234)
T ss_pred HHcCCCCC-HHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 43 3333 33467788874 4566666666654
No 228
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=1.1e-08 Score=123.14 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=124.1
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeec-c--------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK-G-------- 741 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~-~-------- 741 (958)
+.+|+++.|.+.+++.+...+ ..+ +.+..+||+||+|+|||++|+++|+.+........ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~----------~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAF----------ETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------HcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 357899999999888775543 212 23567999999999999999999998865322111 1
Q ss_pred ------------chhhhcccc--chhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHh
Q 002159 742 ------------PELINMYIG--ESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAE 803 (958)
Q Consensus 742 ------------~~l~~~~~G--ese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ 803 (958)
++++..... -.-..+|++.+.++. ....|++|||+|.+. ....+.||+.
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~naLLKt 155 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAFNALLKT 155 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHHHHHHHH
Confidence 111110000 112357777776653 235799999998885 2357888888
Q ss_pred hcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHhhCCCCCC
Q 002159 804 IDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFT 882 (958)
Q Consensus 804 ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~~~t~g~s 882 (958)
|+.. ...+.+|++|+.++.+.+.+++ |+. .+.|.. ++.+.-..+++...++....-+ ..+..|+..+ |.+
T Consensus 156 LEeP---p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~-l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gd 226 (598)
T PRK09111 156 LEEP---PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRR-IEADVLAAHLSRIAAKEGVEVEDEALALIARAA--EGS 226 (598)
T ss_pred HHhC---CCCeEEEEEeCChhhhhHHHHh--hee-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCC
Confidence 8864 3456666677888888888887 884 678875 6677777777777665543222 3456667763 445
Q ss_pred HHHHHHHHHHH
Q 002159 883 GADMYALCADA 893 (958)
Q Consensus 883 GaDi~~l~~~A 893 (958)
..++.+++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 229
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=4.2e-08 Score=115.81 Aligned_cols=165 Identities=16% Similarity=0.303 Sum_probs=108.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE------------EecCcccc----------cchhchHHHHHHHHHHhhc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE------------YSCHNLMA----------SSERKTSAALAQAFNTAQS 454 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~------------I~~~~l~s----------~~~g~~e~~l~~~f~~A~~ 454 (958)
+..+||+||+|+||||+|+++|+.++..... -+|..+.. .........++.+++.+..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998642110 01111110 0012345667777777653
Q ss_pred C----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 455 Y----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 455 ~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
. ...|++|||+|.+.. ..+..+++.+.+ ....+++|.+|
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls~---------------~a~naLLk~LEe----------------------pp~~~vfI~aT 165 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLSK---------------GAFNALLKTLEE----------------------PPPHIIFIFAT 165 (507)
T ss_pred ccccCCcEEEEEEChhhcCH---------------HHHHHHHHHHhh----------------------cCCCEEEEEEe
Confidence 2 236999999987753 123333333221 15677888888
Q ss_pred CCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 531 DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 531 n~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
+....+++.+++|. ..+.+..++..+...+++..++.... ..+ .+.++.++..+.| ..+|...+...+
T Consensus 166 te~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi---~ie-~eAL~~Ia~~s~G-slR~al~~Ldka 233 (507)
T PRK06645 166 TEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENL---KTD-IEALRIIAYKSEG-SARDAVSILDQA 233 (507)
T ss_pred CChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 88889999999876 57889999999999999988865433 122 3456778887776 445555555444
No 230
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.88 E-value=7e-09 Score=117.23 Aligned_cols=138 Identities=25% Similarity=0.387 Sum_probs=93.5
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc--cccchhhhH------------HHHHHHHHhcCCc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM--YIGESEKNV------------RDIFQKARSARPC 769 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~--~~Gese~~v------------r~lf~~A~~~~P~ 769 (958)
.+-.+.+++|.||||||||+||+++|..++.+|+.+.+..-+.. .+|...-.. .-+|...+ +
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ 114 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----V 114 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----e
Confidence 34457889999999999999999999999999999987543321 222211110 11122111 4
Q ss_pred EEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC----CC-----CCCcEEEEEecC-----CCCCCChhhcCcCC
Q 002159 770 VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL----ND-----SSQDLFIIGASN-----RPDLIDPALLRPGR 835 (958)
Q Consensus 770 ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~----~~-----~~~~v~VI~aTN-----rp~~ldpaLlrpgR 835 (958)
|+|+|||+... ..+.+.||..|+.. .. -....+||+|+| .-..+++|+++ |
T Consensus 115 ill~DEInra~-------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 115 ILLLDEINRAP-------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred EEEEeccccCC-------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 99999997765 34667777776641 11 125678888889 44578999999 9
Q ss_pred ccceeeccCCCCHHHHHHHHHHHHh
Q 002159 836 FDKLLYVGVNSDVSYRERVLKALTR 860 (958)
Q Consensus 836 fd~~I~v~~ppd~~~r~~Il~~~~~ 860 (958)
|...++++.|++.++...++.....
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCcc
Confidence 9999999986566655555554443
No 231
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.88 E-value=1.8e-08 Score=114.34 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchh-chHHHHHHHHHHh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSER-KTSAALAQAFNTA 452 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g-~~e~~l~~~f~~A 452 (958)
-.+.+|||+||||||||++++++|..++.+++.+++..+.. .+.| ..+..++..|+.|
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999887763 4555 4556566655554
No 232
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.88 E-value=1.8e-08 Score=104.61 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCc------------------------eeeeccchhhhccccchhhhHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 763 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~vr~lf~~A 763 (958)
+..+||+||+|+|||++|++++..+... +..+... ... -+-..++++.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHHH
Confidence 4569999999999999999999986431 1111100 000 1124566666666
Q ss_pred Hh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccce
Q 002159 764 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 839 (958)
Q Consensus 764 ~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~ 839 (958)
.. ....|++|||+|.+. ....+.||..|+.. ..+..+|.+||.++.+.+++.+ |+. .
T Consensus 89 ~~~~~~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~s--r~~-~ 149 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMN-------------EAAANALLKTLEEP---PPNTLFILITPSPEKLLPTIRS--RCQ-V 149 (188)
T ss_pred ccCcccCCeEEEEEechhhhC-------------HHHHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHh--hcE-E
Confidence 54 345699999998885 23467788888764 2455666677788999999998 884 7
Q ss_pred eeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhh
Q 002159 840 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKK 876 (958)
Q Consensus 840 I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~ 876 (958)
+.++. ++.++...+++.. .++ +..+..++..
T Consensus 150 ~~~~~-~~~~~~~~~l~~~----gi~-~~~~~~i~~~ 180 (188)
T TIGR00678 150 LPFPP-LSEEALLQWLIRQ----GIS-EEAAELLLAL 180 (188)
T ss_pred eeCCC-CCHHHHHHHHHHc----CCC-HHHHHHHHHH
Confidence 88884 7777777777665 232 2335556655
No 233
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.87 E-value=5.3e-09 Score=128.00 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=42.4
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC---CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
.+.+..+++|+| ++||+.|++.++.++.++.+|+.. .. .+.++.++... ++.||+..+..
T Consensus 161 ~~~~~~~~LSgG---q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~ 234 (623)
T PRK10261 161 ILSRYPHQLSGG---MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAE 234 (623)
T ss_pred HHhCCCccCCHH---HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 455677899999 999999999999998888666543 22 23344332222 88999887654
No 234
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.2e-08 Score=118.69 Aligned_cols=172 Identities=18% Similarity=0.300 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------------
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH---------------------------- 424 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~---------------------------- 424 (958)
+.+++.|...+..- +.+..+||+||+|+||||+++++|+.++..
T Consensus 22 e~vv~~L~~al~~g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 22 EHVVRALTHALEQQ--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHHHHHHHHHHhC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 34556666555321 234457999999999999999999998751
Q ss_pred -EEEEecCcccccchhchHHHHHHHHHHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCC
Q 002159 425 -VVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPS 499 (958)
Q Consensus 425 -~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l 499 (958)
+++++..+ ......++++.+... .....|++|||+|.+.. .....+|+.+.+.
T Consensus 94 DviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaNALLKTLEEP- 151 (700)
T PRK12323 94 DYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFNAMLKTLEEP- 151 (700)
T ss_pred cceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHHHHHHhhccC-
Confidence 22222211 122344555555543 22347999999998854 2234455443221
Q ss_pred CCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcH
Q 002159 500 AEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE 579 (958)
Q Consensus 500 ~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~ 579 (958)
..+++||.+||.+..|.+.+++|+ ..+.+..++.++..+.++..+..... ..+ .
T Consensus 152 ---------------------P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi---~~d-~ 205 (700)
T PRK12323 152 ---------------------PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI---AHE-V 205 (700)
T ss_pred ---------------------CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC---CCC-H
Confidence 567899999999999999999985 77889999998888887766644322 111 2
Q ss_pred HHHHHHhhhcCCCChhhHHHHH
Q 002159 580 EFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 580 ~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
..++.+++.+.|- .+|...|+
T Consensus 206 eAL~~IA~~A~Gs-~RdALsLL 226 (700)
T PRK12323 206 NALRLLAQAAQGS-MRDALSLT 226 (700)
T ss_pred HHHHHHHHHcCCC-HHHHHHHH
Confidence 3456666666553 33444443
No 235
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.87 E-value=1.9e-08 Score=97.79 Aligned_cols=124 Identities=20% Similarity=0.323 Sum_probs=81.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHH---HHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAA---LAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~---l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
+..++++||||+|||++++.+++.+ +.+++.+++.+............ ....+.......+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4569999999999999999999998 88899999876554322211111 12222334445789999999997732
Q ss_pred cccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC--CCChhhhccccEEE
Q 002159 471 LVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE--GLPPTIRRCFSHEI 548 (958)
Q Consensus 471 ~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~--~Ld~alrrrf~~eI 548 (958)
. ....+...+..+... .....++.+|++++... .+++.+++||...+
T Consensus 99 ~------------~~~~~~~~i~~~~~~-------------------~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i 147 (151)
T cd00009 99 G------------AQNALLRVLETLNDL-------------------RIDRENVRVIGATNRPLLGDLDRALYDRLDIRI 147 (151)
T ss_pred H------------HHHHHHHHHHhcCce-------------------eccCCCeEEEEecCccccCCcChhHHhhhccEe
Confidence 0 112333333332110 01146788889998776 77888888987777
Q ss_pred EcC
Q 002159 549 SMG 551 (958)
Q Consensus 549 sig 551 (958)
.++
T Consensus 148 ~~~ 150 (151)
T cd00009 148 VIP 150 (151)
T ss_pred ecC
Confidence 665
No 236
>PRK06620 hypothetical protein; Validated
Probab=98.86 E-value=3.5e-08 Score=104.52 Aligned_cols=142 Identities=11% Similarity=0.192 Sum_probs=89.5
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~ 788 (958)
..++||||+|||||+|+++++...+..++.-. .. ..+.+ + ...+++|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~--~~-----------~~~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDI--FF-----------NEEIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchh--hh-----------chhHH---h--cCCEEEEeccccch--------
Confidence 56999999999999999999988765433210 00 01111 1 23699999998431
Q ss_pred CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC--CChhhcCcCCccc--eeeccCCCCHHHHHHHHHHHHhhc--
Q 002159 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL--IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKALTRKF-- 862 (958)
Q Consensus 789 ~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~--ldpaLlrpgRfd~--~I~v~~ppd~~~r~~Il~~~~~~~-- 862 (958)
+..+-.+++.+. + .+..++++++..|.. + |+|+. |+.. .+.+. |||.+.+..+++...+..
T Consensus 99 -----~~~lf~l~N~~~---e-~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~-~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 99 -----EPALLHIFNIIN---E-KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN-SPDDELIKILIFKHFSISSV 165 (214)
T ss_pred -----HHHHHHHHHHHH---h-cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC-CCCHHHHHHHHHHHHHHcCC
Confidence 122333433333 2 245677777766654 5 78887 9863 46677 478888999988776543
Q ss_pred cCCCCcCHHHHHhhCCCCCCHHHHHHHHHH
Q 002159 863 KLLEDVSLYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 863 ~~~~d~~l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
.+. +.-++.|++++ .-+.+.+.+++..
T Consensus 166 ~l~-~ev~~~L~~~~--~~d~r~l~~~l~~ 192 (214)
T PRK06620 166 TIS-RQIIDFLLVNL--PREYSKIIEILEN 192 (214)
T ss_pred CCC-HHHHHHHHHHc--cCCHHHHHHHHHH
Confidence 333 33367888884 4455666666554
No 237
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.86 E-value=2.3e-08 Score=119.68 Aligned_cols=187 Identities=16% Similarity=0.239 Sum_probs=105.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccchhchHHHH---HH-------HHH------
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAAL---AQ-------AFN------ 450 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~~g~~e~~l---~~-------~f~------ 450 (958)
+.+++|+||||||||++||++.... +.+|++++|....-+..+.....+ .. .|.
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 3469999999999999999997642 357899998631100000000000 00 000
Q ss_pred ----HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhh----------h
Q 002159 451 ----TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE----------I 516 (958)
Q Consensus 451 ----~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~----------~ 516 (958)
........++||||++.+.+. ....+...+++-.-.+ ..+|..... .
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~------------~q~~LL~~Le~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 226 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPV------------QMNKLLKVLEDRKVFL-------DSAYYNSENPNIPSHIHDIF 226 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHH------------HHHHHHHHHHhCeeee-------ccccccccCcccccchhhhc
Confidence 011223579999999988651 1122333332210000 001100000 0
Q ss_pred hhhhcCcEEEE-EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChh
Q 002159 517 EKICRQQVLLV-AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPR 595 (958)
Q Consensus 517 ~~~~~~~ViVI-aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~ 595 (958)
.......+.+| +||+.++.+++++++|+ .++.++.++.+++.+|++..+++... ..+ ++.++.++..+ ..++
T Consensus 227 ~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i---~is-~~al~~I~~y~--~n~R 299 (531)
T TIGR02902 227 QNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI---NLE-KHALELIVKYA--SNGR 299 (531)
T ss_pred ccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC---CcC-HHHHHHHHHhh--hhHH
Confidence 01112334444 55578999999999997 57889999999999999998876542 122 23344444333 2568
Q ss_pred hHHHHHHHHHHHHH
Q 002159 596 DLHALVADAGANLI 609 (958)
Q Consensus 596 DL~~Lv~eA~~~a~ 609 (958)
++..+++.|+..+.
T Consensus 300 el~nll~~Aa~~A~ 313 (531)
T TIGR02902 300 EAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887765543
No 238
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-08 Score=109.38 Aligned_cols=126 Identities=32% Similarity=0.485 Sum_probs=90.6
Q ss_pred cccccccccccceeeeccccchhhhhcC-----C-CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-ccc
Q 002159 677 VGGLEDVKKSILDTVQLPLLHKDLFSSG-----L-RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYI 749 (958)
Q Consensus 677 i~Gl~~vk~~l~e~i~~~l~~~~~~~~~-----i-~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~ 749 (958)
+.|.+..|+.+.-++ +.|....... + -..++|||.||.|||||+||+.+|..++.||-.-++..|-. .|+
T Consensus 63 VIGQe~AKKvLsVAV---YNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 63 VIGQEQAKKVLSVAV---YNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred eecchhhhceeeeee---hhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 788888888776555 3333222211 1 12468999999999999999999999999999888877754 699
Q ss_pred cchhhh-HHHHHHHHH----hcCCcEEEEcccccccCCCCCC---CCCcchHHHHHHHHHHhhcCC
Q 002159 750 GESEKN-VRDIFQKAR----SARPCVIFFDELDSLAPARGAS---GDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 750 Gese~~-vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~---~~~~~~~~rv~~~LL~~ldg~ 807 (958)
|+.-++ +-++.+.|. .+...||||||||+++.+-.+. .|.+| +-+...||+.++|.
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG--EGVQQALLKiiEGT 203 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG--EGVQQALLKIIEGT 203 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc--hHHHHHHHHHHcCc
Confidence 997665 455655542 3445799999999999765432 12222 46888999999874
No 239
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.86 E-value=3e-08 Score=114.45 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=58.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchhchH-HHHHHHHHHh----hcCCCeEEeecchhhhhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKTS-AALAQAFNTA----QSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g~~e-~~l~~~f~~A----~~~~P~IL~iDeid~L~~ 470 (958)
..++||+||||||||++|+++|..++.+++.+++..+.. .|.|... ..+...++.+ ....++|+||||+|.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 467999999999999999999999999999999987653 4555543 3344444332 234689999999999987
Q ss_pred c
Q 002159 471 L 471 (958)
Q Consensus 471 ~ 471 (958)
+
T Consensus 188 ~ 188 (412)
T PRK05342 188 K 188 (412)
T ss_pred c
Confidence 4
No 240
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=5.8e-08 Score=111.16 Aligned_cols=156 Identities=22% Similarity=0.315 Sum_probs=99.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+..++|+||+|+||||+|+++|..+... +++++.. .......++++.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~------~~~~v~~ir~i~~~~ 111 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA------SRTKVEEMREILDNI 111 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHH
Confidence 3458999999999999999999998632 2222211 012334456665554
Q ss_pred hc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 QS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
.. ....+++|||+|.+.. .....+++.+.+ ....+.+|.
T Consensus 112 ~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk~lEe----------------------~~~~~~fIl 154 (363)
T PRK14961 112 YYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLKTLEE----------------------PPQHIKFIL 154 (363)
T ss_pred hcCcccCCceEEEEEChhhcCH---------------HHHHHHHHHHhc----------------------CCCCeEEEE
Confidence 32 1235999999987753 122334433322 145677777
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
+|+.+..+.+.+++|+ ..+.+..|+.++..++++..++.... ..+ ++.++.++..+.| ..++...++
T Consensus 155 ~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~---~i~-~~al~~ia~~s~G-~~R~al~~l 221 (363)
T PRK14961 155 ATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI---DTD-EYALKLIAYHAHG-SMRDALNLL 221 (363)
T ss_pred EcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-CHHHHHHHH
Confidence 8888888999999886 67999999999999988887755432 122 3445667766655 333433333
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.86 E-value=5.1e-08 Score=103.88 Aligned_cols=162 Identities=14% Similarity=0.207 Sum_probs=98.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
.+..++|+||+|||||+++++++.+. +.+++.++|..+.... ...++... ...+++|||++.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh
Confidence 34579999999999999999999876 4678889887654321 22232222 34689999999875310
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCC--C-hhhhccc--cEE
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL--P-PTIRRCF--SHE 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L--d-~alrrrf--~~e 547 (958)
.....+..+++.... .+..+++.++..+..+ . +.+++|+ ...
T Consensus 107 ----------~~~~~L~~~l~~~~~-----------------------~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 107 ----------EWQEALFHLYNRVRE-----------------------AGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ----------HHHHHHHHHHHHHHH-----------------------cCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 011233333332211 2223444444344333 2 6777776 478
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~ 605 (958)
+.+++|++.++..+++....+... ..+ ...+..++.. .+-..+++..+++++.
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~---~~~-~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGL---QLP-DEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 999999999999999877643322 222 3445666664 4445566666665544
No 242
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.85 E-value=3.3e-08 Score=113.52 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=58.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchhch-HHHHHHHHHHh----hcCCCeEEeecchhhhhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKT-SAALAQAFNTA----QSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g~~-e~~l~~~f~~A----~~~~P~IL~iDeid~L~~ 470 (958)
..++||+||||||||++++++|..++.++..+++..+.. .|.|.. +..+...++.+ ....++|+||||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 357999999999999999999999999999999887653 355553 34444444432 234678999999999987
Q ss_pred cc
Q 002159 471 LV 472 (958)
Q Consensus 471 ~~ 472 (958)
++
T Consensus 196 ~~ 197 (413)
T TIGR00382 196 KS 197 (413)
T ss_pred hh
Confidence 54
No 243
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=2.6e-08 Score=116.62 Aligned_cols=156 Identities=13% Similarity=0.262 Sum_probs=99.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhch-HHHHHHHHHHhhcCCCeEEeecchhhhhhc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKT-SAALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~-e~~l~~~f~~A~~~~P~IL~iDeid~L~~~ 471 (958)
.+++||||+|+|||+|++++++++ +..++++++.+++....... ...+.. |...-...+.+|+|||++.+..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 359999999999999999999986 45678888877554332211 111222 22221235789999999987641
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC---CChhhhcccc--E
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--H 546 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~---Ld~alrrrf~--~ 546 (958)
.+...++..+++.+.+ .+..+|+++.+.|.. +.+.+++||. .
T Consensus 210 ----------~~~q~elf~~~n~l~~-----------------------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl 256 (440)
T PRK14088 210 ----------TGVQTELFHTFNELHD-----------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_pred ----------HHHHHHHHHHHHHHHH-----------------------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCc
Confidence 1122344444444422 334566666566655 4567888874 3
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.+.+..||.+.|.+|++..+..... .+ .++.++.++.+..|
T Consensus 257 ~v~i~~pd~e~r~~IL~~~~~~~~~---~l-~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 257 VAKLEPPDEETRKKIARKMLEIEHG---EL-PEEVLNFVAENVDD 297 (440)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHhcccc
Confidence 5789999999999999998864332 22 24456777776654
No 244
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=3.9e-08 Score=116.95 Aligned_cols=171 Identities=18% Similarity=0.294 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEe
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYS 429 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I~ 429 (958)
..++.|...+.- -+.+..+||+||+|+||||+|+++|+.++. ++++++
T Consensus 22 ~vv~~L~~aI~~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 22 HVSRALSSALER--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 455666655531 133456899999999999999999999864 233443
Q ss_pred cCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccc
Q 002159 430 CHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE 505 (958)
Q Consensus 430 ~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~ 505 (958)
..+ ......++.+...+.. ....|++|||+|.+.. .....+++.+.+
T Consensus 94 AAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKtLEE-------- 144 (702)
T PRK14960 94 AAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKTLEE-------- 144 (702)
T ss_pred ccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHHHhc--------
Confidence 321 1233455565554431 2346999999998754 122333332211
Q ss_pred ccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHH
Q 002159 506 ESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDI 585 (958)
Q Consensus 506 ~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~l 585 (958)
....+.+|.+|+.+..+++.+++|+ ..+.+..++..+-...++..+.+... ..+ ...+..+
T Consensus 145 --------------PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI---~id-~eAL~~I 205 (702)
T PRK14960 145 --------------PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQI---AAD-QDAIWQI 205 (702)
T ss_pred --------------CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHH
Confidence 1456788888888889998988876 67889999999888888877755433 122 3446667
Q ss_pred hhhcCCCChhhHHHHH
Q 002159 586 IGQTSGFMPRDLHALV 601 (958)
Q Consensus 586 a~~t~Gfv~~DL~~Lv 601 (958)
+..+.| ..+|...++
T Consensus 206 A~~S~G-dLRdALnLL 220 (702)
T PRK14960 206 AESAQG-SLRDALSLT 220 (702)
T ss_pred HHHcCC-CHHHHHHHH
Confidence 776665 334444443
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=5.1e-08 Score=113.93 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=99.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~ 474 (958)
.+++||||+|+|||+|++++++++ +..++++++.++...........-.+.|.... ..+.+++|||++.+..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 469999999999999999999986 67788888765443221111110111233222 356799999999876411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChhhhcccc--EEEE
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS--HEIS 549 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf~--~eIs 549 (958)
....++..+++.+.. .+..++++++..|. .+++.+++||. ..+.
T Consensus 219 --------~~qeelf~l~N~l~~-----------------------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHT-----------------------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP 267 (445)
T ss_pred --------hhHHHHHHHHHHHHH-----------------------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe
Confidence 123344444444321 23345555554453 46788999985 6788
Q ss_pred cCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+..|+.+.|.+|++..+..... .++ ++.++.++.+..+
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~---~l~-~evl~~la~~~~~ 305 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSI---RIE-ETALDFLIEALSS 305 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhcCC
Confidence 9999999999999988866432 222 3446667766553
No 246
>PHA02244 ATPase-like protein
Probab=98.83 E-value=4.2e-08 Score=109.84 Aligned_cols=129 Identities=24% Similarity=0.292 Sum_probs=81.1
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc---cccchhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM---YIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~---~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
.+..+..++|+||||||||++|+++|..++.+|+.++.-.-... +++........-|-+|. ....+++|||++.+.
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~ 193 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASI 193 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCC
Confidence 34556789999999999999999999999999998874210001 11111111111222332 245799999998775
Q ss_pred CCCCCCCCCcchHHHHHHHHHH-----hhcCCCCCCCcEEEEEecCCC-----------CCCChhhcCcCCccceeeccC
Q 002159 781 PARGASGDSGGVMDRVVSQMLA-----EIDGLNDSSQDLFIIGASNRP-----------DLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~-----~ldg~~~~~~~v~VI~aTNrp-----------~~ldpaLlrpgRfd~~I~v~~ 844 (958)
+. ....++.++. ..++......++.+|+|+|.+ ..+++|++. ||- .|+++.
T Consensus 194 p~----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dy 260 (383)
T PHA02244 194 PE----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDY 260 (383)
T ss_pred HH----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCC
Confidence 21 1122333332 112221123578999999974 477999999 995 689998
Q ss_pred CC
Q 002159 845 NS 846 (958)
Q Consensus 845 pp 846 (958)
|+
T Consensus 261 p~ 262 (383)
T PHA02244 261 DE 262 (383)
T ss_pred Cc
Confidence 43
No 247
>PRK13409 putative ATPase RIL; Provisional
Probab=98.83 E-value=2.3e-09 Score=129.65 Aligned_cols=59 Identities=27% Similarity=0.224 Sum_probs=41.4
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc-CC----CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT-SG----FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t-~G----fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||++|++.++.+++.+.+|+.. ..++.++.++. .| ++.||+..+..
T Consensus 206 ~~~~~~~LSgG---e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 206 LDRDISELSGG---ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred hcCChhhCCHH---HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45666889999 999999999999998877555433 33333333322 13 78999988754
No 248
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1e-07 Score=109.63 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHhhcC-CCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee--------------cCcccc-
Q 002159 373 GDTVKILASILAPTL-CPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE-YS--------------CHNLMA- 435 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l-~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~-I~--------------~~~l~s- 435 (958)
+.+++.|...+.--. ++..++.+.+.++||+||+|+|||++++++|+.+...... -. .+++.-
T Consensus 11 ~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i 90 (394)
T PRK07940 11 EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVV 90 (394)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 345566666654322 2333344567789999999999999999999987442100 00 011110
Q ss_pred --cchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCC
Q 002159 436 --SSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHG 509 (958)
Q Consensus 436 --~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g 509 (958)
....-....++.+++.+.. ....|++|||+|.+... ....+++.+.+.
T Consensus 91 ~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep----------- 144 (394)
T PRK07940 91 APEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEP----------- 144 (394)
T ss_pred ccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcC-----------
Confidence 0011234457777776652 12359999999988641 122333333221
Q ss_pred CCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc
Q 002159 510 YFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT 589 (958)
Q Consensus 510 ~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t 589 (958)
..++++|.+|++++.+.|.+++|. ..+.++.|+.++....+.... . .+ .+.+..++..+
T Consensus 145 -----------~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~-----~~-~~~a~~la~~s 203 (394)
T PRK07940 145 -----------PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---G-----VD-PETARRAARAS 203 (394)
T ss_pred -----------CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---C-----CC-HHHHHHHHHHc
Confidence 334555555556899999999986 799999999998776665221 1 11 23356778888
Q ss_pred CCCChhhHHHHHH
Q 002159 590 SGFMPRDLHALVA 602 (958)
Q Consensus 590 ~Gfv~~DL~~Lv~ 602 (958)
+|..+..+..+..
T Consensus 204 ~G~~~~A~~l~~~ 216 (394)
T PRK07940 204 QGHIGRARRLATD 216 (394)
T ss_pred CCCHHHHHHHhcC
Confidence 8888777666544
No 249
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=8.8e-08 Score=112.28 Aligned_cols=160 Identities=20% Similarity=0.311 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC------------------------CcEEEEecCcccccchhchHHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLG------------------------IHVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg------------------------~~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
.+..+||+||+|+||||+|+++|..++ +++++++..+ ......++.+.+.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~ 107 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILEN 107 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHH
Confidence 345689999999999999999998763 2345555432 2234557777666
Q ss_pred hhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
+.. ....+++|||+|.+.. +.+..+++.+.+. ...+.+|
T Consensus 108 ~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~LEeP----------------------p~~v~fI 150 (491)
T PRK14964 108 SCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKTLEEP----------------------APHVKFI 150 (491)
T ss_pred HHhccccCCceEEEEeChHhCCH---------------HHHHHHHHHHhCC----------------------CCCeEEE
Confidence 642 2346999999987754 2234444443221 4567888
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
.+|+.+..+++.+++|+ ..+.+..++..+....++..+.+... ..+ .+.++.++..+.| ..+|...++..+
T Consensus 151 latte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi---~i~-~eAL~lIa~~s~G-slR~alslLdql 221 (491)
T PRK14964 151 LATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENI---EHD-EESLKLIAENSSG-SMRNALFLLEQA 221 (491)
T ss_pred EEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 88888899999999886 66899999999988888887765433 122 3446677777765 444555554443
No 250
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=2e-08 Score=121.76 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=115.1
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceee-----ec----
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS-----VK---- 740 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~-----v~---- 740 (958)
...+|+++.|.+.+++.|...+. .+ +.+..+||+||+|+|||++|+++|..+...... +.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~----------~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIA----------EG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH----------hC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34579999999999887755431 11 224558999999999999999999987532110 00
Q ss_pred --------cchhhhcc--ccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC
Q 002159 741 --------GPELINMY--IGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 806 (958)
Q Consensus 741 --------~~~l~~~~--~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg 806 (958)
.++++... ....-..+|++.+.+.. ....|++|||+|.+. ....+.||+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-------------~~a~naLLk~LEe 146 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-------------TAAFNALLKTLEE 146 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-------------HHHHHHHHHHHhc
Confidence 01111000 00112345555544432 334699999999875 2356788888886
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHH
Q 002159 807 LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGAD 885 (958)
Q Consensus 807 ~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaD 885 (958)
.. ..+++|++|+.++.+.+.+.+ |+. .+.|.. ++..+...+++...++..+. .+..+..++..+ |-+..+
T Consensus 147 pp---~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~-l~~~el~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~ 217 (585)
T PRK14950 147 PP---PHAIFILATTEVHKVPATILS--RCQ-RFDFHR-HSVADMAAHLRKIAAAEGINLEPGALEAIARAA--TGSMRD 217 (585)
T ss_pred CC---CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHH
Confidence 42 355666667778888888877 775 567774 66666666666665544332 222356677663 335555
Q ss_pred HHHHHH
Q 002159 886 MYALCA 891 (958)
Q Consensus 886 i~~l~~ 891 (958)
+.+.++
T Consensus 218 al~~Le 223 (585)
T PRK14950 218 AENLLQ 223 (585)
T ss_pred HHHHHH
Confidence 555444
No 251
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.82 E-value=2.9e-08 Score=105.51 Aligned_cols=165 Identities=19% Similarity=0.307 Sum_probs=101.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchh-hhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESE-KNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese-~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..+.||||+|+|||+|++|++++. +..++++++.++...+..... ..+.++.+..+ ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999999875 466888888888766554332 22333333333 3469999999998732
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCccc--eeeccCCCCHHHHHHHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd~--~I~v~~ppd~~~r~~Il~~ 857 (958)
.+....|...++.+.. .++.+|+.+...|.. ++|.|.. ||.. .+.+. ||+.+.|..|++.
T Consensus 113 -----------~~~q~~lf~l~n~~~~-~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~-~pd~~~r~~il~~ 177 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIE-SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQ-PPDDEDRRRILQK 177 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHH-TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE-----HHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHh-hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcC-CCCHHHHHHHHHH
Confidence 1223333333333322 244566666566664 4677777 8865 66666 5899999999998
Q ss_pred HHhhccCCCCcC-HHHHHhhCCCCCCHHHHHHHHHH
Q 002159 858 LTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCAD 892 (958)
Q Consensus 858 ~~~~~~~~~d~~-l~~la~~~t~g~sGaDi~~l~~~ 892 (958)
..+...+.-+.+ ++.|+.++ .-+-++|..++..
T Consensus 178 ~a~~~~~~l~~~v~~~l~~~~--~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIELPEEVIEYLARRF--RRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT--S-HHHHHHHHHHT--TSSHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHhh--cCCHHHHHHHHHH
Confidence 776544332222 56778774 3466777776664
No 252
>PLN03025 replication factor C subunit; Provisional
Probab=98.81 E-value=4.3e-08 Score=110.34 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=97.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-C----CcEEEEecCcccccchhchHHHHHHHHHH---hh----cCCCeEEeecchh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL-G----IHVVEYSCHNLMASSERKTSAALAQAFNT---AQ----SYSPTILLLRDFD 466 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l-g----~~~~~I~~~~l~s~~~g~~e~~l~~~f~~---A~----~~~P~IL~iDeid 466 (958)
+++|+|||||||||+++++|+++ + ..+++++.++..+ ...++..... .. .....+++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 48999999999999999999997 2 2356666554221 1123322221 11 1235799999999
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
.+... ....|.++++.. ...+.+|.+||....+.+.+++|. .
T Consensus 110 ~lt~~----------------aq~aL~~~lE~~---------------------~~~t~~il~~n~~~~i~~~L~SRc-~ 151 (319)
T PLN03025 110 SMTSG----------------AQQALRRTMEIY---------------------SNTTRFALACNTSSKIIEPIQSRC-A 151 (319)
T ss_pred hcCHH----------------HHHHHHHHHhcc---------------------cCCceEEEEeCCccccchhHHHhh-h
Confidence 88641 122223332211 233557778888888888999885 5
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
.+.+..|+.++....++..+++... ..+ .+.++.++..+. +|+..+...
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi---~i~-~~~l~~i~~~~~----gDlR~aln~ 200 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV---PYV-PEGLEAIIFTAD----GDMRQALNN 200 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcC----CCHHHHHHH
Confidence 7899999999999988887765433 122 344666766654 466655543
No 253
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=1.8e-07 Score=102.44 Aligned_cols=196 Identities=16% Similarity=0.247 Sum_probs=113.9
Q ss_pred CCCCCC-cEEEecCCCChhHHHHHHHHHHcCC-ceeee-------ccchhhh---ccccchh------hhHHHHH----H
Q 002159 704 GLRKRS-GVLLYGPPGTGKTLLAKAVATECSL-NFLSV-------KGPELIN---MYIGESE------KNVRDIF----Q 761 (958)
Q Consensus 704 ~i~~~~-~iLL~GppGtGKTtLakaiA~~~~~-~~i~v-------~~~~l~~---~~~Gese------~~vr~lf----~ 761 (958)
++.++. -++|+||+|+||||+++.++.++.. .+... +..+++. ...|... ...+.+. .
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 344444 4889999999999999999998752 22211 1111111 1122111 1122222 2
Q ss_pred HHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---C-C---hhhcCcC
Q 002159 762 KARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---I-D---PALLRPG 834 (958)
Q Consensus 762 ~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---l-d---paLlrpg 834 (958)
......+.+|+|||++.+.. . ....+..+... .......+.|+ .+..|+. + + ..+.+
T Consensus 118 ~~~~~~~~vliiDe~~~l~~---------~-~~~~l~~l~~~---~~~~~~~~~vv-l~g~~~~~~~l~~~~~~~l~~-- 181 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTP---------E-LLEELRMLSNF---QTDNAKLLQIF-LVGQPEFRETLQSPQLQQLRQ-- 181 (269)
T ss_pred HHhCCCCeEEEEECcccCCH---------H-HHHHHHHHhCc---ccCCCCeEEEE-EcCCHHHHHHHcCchhHHHHh--
Confidence 23456778999999988741 1 11222222221 11112223333 3334431 1 1 13444
Q ss_pred CccceeeccCCCCHHHHHHHHHHHHhhccC-----CCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 002159 835 RFDKLLYVGVNSDVSYRERVLKALTRKFKL-----LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNS 909 (958)
Q Consensus 835 Rfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-----~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~ 909 (958)
|+...+.++. .+.++-..++...++.... -.+..+..|++. +.|+... |..+|..|...|..+.
T Consensus 182 r~~~~~~l~~-l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~-s~G~p~~-i~~l~~~~~~~a~~~~-------- 250 (269)
T TIGR03015 182 RIIASCHLGP-LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF-SRGIPRL-INILCDRLLLSAFLEE-------- 250 (269)
T ss_pred heeeeeeCCC-CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH-cCCcccH-HHHHHHHHHHHHHHcC--------
Confidence 7777888884 7788888888877764432 123446777887 4888655 9999999998887652
Q ss_pred CccccccCCcccccHHHHHHHHHHhC
Q 002159 910 DSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 910 ~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
...|+.+++.+++..+.
T Consensus 251 ---------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 ---------KREIGGEEVREVIAEID 267 (269)
T ss_pred ---------CCCCCHHHHHHHHHHhh
Confidence 12589999999998764
No 254
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.80 E-value=3.9e-08 Score=111.58 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchh-chHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSER-KTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g-~~e~~l~~~f~~A 452 (958)
+.++||+||||||||++++++|+.++.+++.+++..+.. .|.| ..+..++..|+.|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999987764 4555 4455566665555
No 255
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.80 E-value=9.5e-09 Score=107.52 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=100.2
Q ss_pred cCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC--cccccchhchHHHHHHHHHHhhcCCCeEEeec
Q 002159 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH--NLMASSERKTSAALAQAFNTAQSYSPTILLLR 463 (958)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~--~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iD 463 (958)
.++.-.+.+..|..+.|+|++|||||||+|++++-..+..+.|... .+..+... + +..+....+|-|
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~------~-----~~~~~VQmVFQD 90 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA------K-----AFYRPVQMVFQD 90 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc------h-----hhccceeEEecC
Confidence 3444455566677799999999999999999999988877666543 22211100 0 112233455555
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCC-chhhhhhhhcCcEEEEEecCCCCCCChhhhc
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYF-PVKEIEKICRQQVLLVAAADSSEGLPPTIRR 542 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~-~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr 542 (958)
=..++-|.+ .+...+.+-... +|.. ....+.... ..-++++..++
T Consensus 91 p~~SLnP~~--------------tv~~~l~Epl~~---------~~~~~~~~~i~~~L-----------~~VgL~~~~l~ 136 (252)
T COG1124 91 PYSSLNPRR--------------TVGRILSEPLRP---------HGLSKSQQRIAELL-----------DQVGLPPSFLD 136 (252)
T ss_pred CccccCcch--------------hHHHHHhhhhcc---------CCccHHHHHHHHHH-----------HHcCCCHHHHh
Confidence 544454411 111111111110 0000 000111111 23478999999
Q ss_pred cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcH-----------HHHHHHhhhcCC---CChhhHHHHHHHH
Q 002159 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE-----------EFVKDIIGQTSG---FMPRDLHALVADA 604 (958)
Q Consensus 543 rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~-----------~~L~~la~~t~G---fv~~DL~~Lv~eA 604 (958)
|+.+++|+| +.||.+|++++..++..+..|+... ..|.++.++..- |++||+..+..-+
T Consensus 137 R~P~eLSGG---Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 137 RRPHELSGG---QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred cCchhcChh---HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 999999999 9999999999999988886665441 123333333221 8999998765544
No 256
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=9.4e-08 Score=108.14 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=98.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCcccccch-------------hc-------hHHHHHHHHHHhh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSE-------------RK-------TSAALAQAFNTAQ 453 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg-----~~~~~I~~~~l~s~~~-------------g~-------~e~~l~~~f~~A~ 453 (958)
+++|+|||||||||+++++++++. ..++.+++.++..... +. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 589999999999999999999984 3467788766432110 00 1223333333332
Q ss_pred cC-----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 454 SY-----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 454 ~~-----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
.. .+.++++||++.+... ....|.++++.. .....+|.
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~----------------~~~~L~~~le~~---------------------~~~~~~Il 160 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED----------------AQQALRRIMEQY---------------------SRTCRFII 160 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH----------------HHHHHHHHHHhc---------------------cCCCeEEE
Confidence 22 3469999999877431 111222332210 22344555
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
+|+.+..+.+.+++|+ ..+.+..|+.++...+++..+.+... .. ..+.++.++..+ +.|+..+....
T Consensus 161 ~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~al~~l~~~~----~gdlr~l~~~l 227 (337)
T PRK12402 161 ATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGV---DY-DDDGLELIAYYA----GGDLRKAILTL 227 (337)
T ss_pred EeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHc----CCCHHHHHHHH
Confidence 6666667777888885 57899999999999999887765433 22 234566677665 45666665443
No 257
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.1e-07 Score=112.84 Aligned_cols=175 Identities=18% Similarity=0.273 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I 428 (958)
+.+++.|...+.-- +.+..+||+||+|+||||+|+++|+.++.. ++++
T Consensus 22 ~~v~~~L~~~~~~~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 22 APVVRALSNALDQQ--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHHHHHHHHHHhC--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 35566666655321 233457999999999999999999998642 3444
Q ss_pred ecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 429 ~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
+..+ ......++.+.+.+.. ..-.|++|||+|.+.. ..+..+++.+.+.
T Consensus 94 daas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~LEep------ 146 (509)
T PRK14958 94 DAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKTLEEP------ 146 (509)
T ss_pred cccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHHHhcc------
Confidence 4321 2234445665554431 1235999999998864 1234444433221
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
...+.+|.+|+.+..+++.+++|. ..+.+..++..+-...++..++.... ..+ ...+..
T Consensus 147 ----------------p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi---~~~-~~al~~ 205 (509)
T PRK14958 147 ----------------PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENV---EFE-NAALDL 205 (509)
T ss_pred ----------------CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 456788888888999998998875 56778888888877777766654432 112 334566
Q ss_pred HhhhcCCCChhhHHHHHHHH
Q 002159 585 IIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 585 la~~t~Gfv~~DL~~Lv~eA 604 (958)
++..+.| ..+|...++..+
T Consensus 206 ia~~s~G-slR~al~lLdq~ 224 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQS 224 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHH
Confidence 7666654 455655555443
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.79 E-value=4.6e-07 Score=96.86 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
.+.+++|+||+|||||+|+++++++. +..+..+++.++... +.. .....+++|||+|.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~- 105 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA- 105 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch-
Confidence 34579999999999999999999876 667888887653211 111 124578999999976430
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc-EEEEEecCCC--CCCChhhhccc--cEE
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ-VLLVAAADSS--EGLPPTIRRCF--SHE 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~-ViVIaaTn~~--~~Ld~alrrrf--~~e 547 (958)
....+..++++.. ..+. +++++++..+ ..+.+.+++|| ...
T Consensus 106 -----------~~~~L~~~~~~~~-----------------------~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 106 -----------QQIALFNLFNRVR-----------------------AHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151 (227)
T ss_pred -----------HHHHHHHHHHHHH-----------------------HcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeE
Confidence 1123333333321 1333 3444444333 23557788776 478
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+.+++|+++++..+++.+...... ..+ ++.+..++..+.|
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~~~v---~l~-~~al~~L~~~~~g 191 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAERGL---QLA-DEVPDYLLTHFRR 191 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhccC
Confidence 999999999999998877654332 122 3456666665444
No 259
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.78 E-value=2.4e-07 Score=101.05 Aligned_cols=49 Identities=37% Similarity=0.708 Sum_probs=42.0
Q ss_pred hhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC--Cceeeeccchhhhccc
Q 002159 701 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYI 749 (958)
Q Consensus 701 ~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~--~~~i~v~~~~l~~~~~ 749 (958)
...+...+++||+.||||||||.||-+||.++| .||..++++++++.-+
T Consensus 58 ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 58 IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 344666799999999999999999999999997 6899999999876533
No 260
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=5e-08 Score=116.03 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=100.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhccc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s 473 (958)
.++|||++|+|||.|++++++++ +..+.++++.+++..+...........|.+.- ..+.+|+||+++.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH-
Confidence 49999999999999999999986 56788898877665543332222222333222 346899999999886521
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC-C---CCCChhhhccccE--E
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS-S---EGLPPTIRRCFSH--E 547 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~-~---~~Ld~alrrrf~~--e 547 (958)
....++-.+++.+.+ .+.-+|| |+|. + ..+++.|++||.. .
T Consensus 394 ---------~tqeeLF~l~N~l~e-----------------------~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLv 440 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHN-----------------------ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLI 440 (617)
T ss_pred ---------HHHHHHHHHHHHHHh-----------------------cCCCEEE-ecCCChHhhhhccHHHHhhhhcCce
Confidence 122344555555432 2233444 4443 3 3567899999855 4
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+.+..||.+.|.+|++..+..... ++. ++.++.|+.+..+
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l---~l~-~eVi~yLa~r~~r 480 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQL---NAP-PEVLEFIASRISR 480 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHhccC
Confidence 588999999999999998865433 222 4456666766543
No 261
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=9.6e-08 Score=115.12 Aligned_cols=148 Identities=19% Similarity=0.296 Sum_probs=99.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+..+||+||+|+||||+++++|+.++.. +++++..+ ......++++.+.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~ 111 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNV 111 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHH
Confidence 3457999999999999999999998652 23332211 11233455555443
Q ss_pred h----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 Q----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
. .....|++|||+|.+.. .....+|+.+.+. ...+.+|.
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKtLEEP----------------------p~~v~FIL 154 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEEP----------------------PEHVKFLL 154 (647)
T ss_pred HhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHHHHcC----------------------CCCeEEEE
Confidence 3 12346999999998854 2234444444321 56788888
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf 592 (958)
+|+.+..|.+.+++|. ..+.+..++..+-...++..+..... ..+ ...+..++..+.|-
T Consensus 155 ~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e-~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI---PFE-PRALQLLARAADGS 213 (647)
T ss_pred ecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCCC
Confidence 8999999999999984 88999999999988888877644322 111 33456666666663
No 262
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.78 E-value=1.3e-08 Score=106.53 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=104.2
Q ss_pred HHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--EEecCcccccchhchHHHHHHHHHHhhc
Q 002159 377 KILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV--EYSCHNLMASSERKTSAALAQAFNTAQS 454 (958)
Q Consensus 377 k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~--~I~~~~l~s~~~g~~e~~l~~~f~~A~~ 454 (958)
+...+.++..+.++.| +.|.||+||||||++|.|-.-+.+..+ .+++.++.....-+....+..+.|...
T Consensus 14 ~~av~~v~l~I~~gef-------~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig- 85 (309)
T COG1125 14 KKAVDDVNLTIEEGEF-------LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG- 85 (309)
T ss_pred ceeeeeeeEEecCCeE-------EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc-
Confidence 3344445666666666 999999999999999999988877654 455655554333333344444444332
Q ss_pred CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC
Q 002159 455 YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (958)
Q Consensus 455 ~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~ 534 (958)
.-|-.-+.++|..+.. . ......++.+..++++ ..-
T Consensus 86 LFPh~Tv~eNIa~VP~-L--------~~w~k~~i~~r~~ELl-----------------------------------~lv 121 (309)
T COG1125 86 LFPHLTVAENIATVPK-L--------LGWDKERIKKRADELL-----------------------------------DLV 121 (309)
T ss_pred cCCCccHHHHHHhhhh-h--------cCCCHHHHHHHHHHHH-----------------------------------HHh
Confidence 2344444455432221 1 1111222222222222 112
Q ss_pred CCCh-hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhh---cCCCChhhHHH
Q 002159 535 GLPP-TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQ---TSGFMPRDLHA 599 (958)
Q Consensus 535 ~Ld~-alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~---t~Gfv~~DL~~ 599 (958)
+|+| .+..|+.+++|+| ++||+.+++++...++.+..|+.. . +.+.++-+. |-=||.||+..
T Consensus 122 gL~p~~~~~RyP~eLSGG---QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 122 GLDPSEYADRYPHELSGG---QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred CCCHHHHhhcCchhcCcc---hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 6777 4888999999999 999999999999988877555432 1 122233222 33399999987
Q ss_pred HHHHHH
Q 002159 600 LVADAG 605 (958)
Q Consensus 600 Lv~eA~ 605 (958)
-.+-|.
T Consensus 199 A~kLad 204 (309)
T COG1125 199 ALKLAD 204 (309)
T ss_pred HHhhhc
Confidence 665543
No 263
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.78 E-value=1.7e-07 Score=99.15 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHH
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
..+.|.....-++. -.+..++||+|++|||||+++|++.++. |..+++|...++. .+..+++.
T Consensus 35 Qk~~l~~Nt~~Fl~-----G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~ 100 (249)
T PF05673_consen 35 QKEALIENTEQFLQ-----GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDL 100 (249)
T ss_pred HHHHHHHHHHHHHc-----CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHH
Confidence 33445444433333 2455679999999999999999999876 6788888765533 34444444
Q ss_pred hh-cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 452 AQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 452 A~-~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.+ ....-|||+|++. +.. .......+.++|+.-+ .....+|++.||+
T Consensus 101 l~~~~~kFIlf~DDLs-Fe~----------~d~~yk~LKs~LeGgl---------------------e~~P~NvliyATS 148 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLS-FEE----------GDTEYKALKSVLEGGL---------------------EARPDNVLIYATS 148 (249)
T ss_pred HhcCCCCEEEEecCCC-CCC----------CcHHHHHHHHHhcCcc---------------------ccCCCcEEEEEec
Confidence 33 3356899999864 221 1112223333332211 1127789999999
Q ss_pred CCCCCCCh-----------------------hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhh
Q 002159 531 DSSEGLPP-----------------------TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIG 587 (958)
Q Consensus 531 n~~~~Ld~-----------------------alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~ 587 (958)
|+..-++. +|-.||.-.|.+..|++++-++|.+.++.................++|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 98744321 2334899999999999999999999999765442111111222345566
Q ss_pred hcCCCChhhHHHHH
Q 002159 588 QTSGFMPRDLHALV 601 (958)
Q Consensus 588 ~t~Gfv~~DL~~Lv 601 (958)
...|.+|+--.+.+
T Consensus 229 ~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 229 RRGGRSGRTARQFI 242 (249)
T ss_pred HcCCCCHHHHHHHH
Confidence 66666665444433
No 264
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.77 E-value=5e-08 Score=109.74 Aligned_cols=155 Identities=22% Similarity=0.351 Sum_probs=95.9
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-------CCcee---------
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-------SLNFL--------- 737 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-------~~~~i--------- 737 (958)
|..|.|.+.+|..+.-... -+...+++|.|+||+|||||++++++.+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVI------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhc------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 5668888888876532221 1124679999999999999999999877 22221
Q ss_pred ----ee--c-------------cchhhh-----ccccchh--hh--------HHHHHHHHHhcCCcEEEEcccccccCCC
Q 002159 738 ----SV--K-------------GPELIN-----MYIGESE--KN--------VRDIFQKARSARPCVIFFDELDSLAPAR 783 (958)
Q Consensus 738 ----~v--~-------------~~~l~~-----~~~Gese--~~--------vr~lf~~A~~~~P~ILfiDEiD~l~~~r 783 (958)
.. . ..++-. ..+|... +. -..++.+ +...+||+||++.+.
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~--- 144 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLE--- 144 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCC---
Confidence 00 0 011100 1222210 00 0011111 234699999999874
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCC---------C-CCCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHHHH
Q 002159 784 GASGDSGGVMDRVVSQMLAEIDGL---------N-DSSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRE 852 (958)
Q Consensus 784 ~~~~~~~~~~~rv~~~LL~~ldg~---------~-~~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~r~ 852 (958)
..+.+.|+..|+.- . ....++++|+|+|-.+ .+.++|+. ||...+.++.|.+.++|.
T Consensus 145 ----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 ----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 34566666666421 0 0123578888877555 68999999 999999999866668888
Q ss_pred HHHHHH
Q 002159 853 RVLKAL 858 (958)
Q Consensus 853 ~Il~~~ 858 (958)
+|++..
T Consensus 213 eIL~~~ 218 (337)
T TIGR02030 213 EIVERR 218 (337)
T ss_pred HHHHhh
Confidence 888774
No 265
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=6.9e-09 Score=102.00 Aligned_cols=123 Identities=24% Similarity=0.323 Sum_probs=67.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc------cchhc------hHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA------SSERK------TSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s------~~~g~------~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
+|+|+||||||||++++.+|..++.++..++++.... .+.-. ..+.+-+.+ ..+.+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-----~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-----RKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-----HEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-----cceeEEEECCcc
Confidence 4899999999999999999999999999999875221 11100 000000000 147899999998
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC----CCChhhhc
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE----GLPPTIRR 542 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~----~Ld~alrr 542 (958)
...+ ++...|..+++..... ....+..............+.+|||+|... .+++++++
T Consensus 76 ~a~~----------------~v~~~L~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~ 137 (139)
T PF07728_consen 76 RAPP----------------EVLESLLSLLEERRIQ--LPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD 137 (139)
T ss_dssp G--H----------------HHHHTTHHHHSSSEEE--E-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT
T ss_pred cCCH----------------HHHHHHHHHHhhCccc--ccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh
Confidence 6543 2333333333321000 000011000000001122599999999888 89999999
Q ss_pred cc
Q 002159 543 CF 544 (958)
Q Consensus 543 rf 544 (958)
||
T Consensus 138 Rf 139 (139)
T PF07728_consen 138 RF 139 (139)
T ss_dssp T-
T ss_pred hC
Confidence 97
No 266
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.76 E-value=4.1e-08 Score=120.01 Aligned_cols=154 Identities=23% Similarity=0.368 Sum_probs=99.4
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCC-CCCcEEEecCCCChhHHHHHHHHHHc--------------------
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLR-KRSGVLLYGPPGTGKTLLAKAVATEC-------------------- 732 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~-~~~~iLL~GppGtGKTtLakaiA~~~-------------------- 732 (958)
|.+|.|.+.+|..+.-.. +. ...+|||.|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~a-------------v~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNA-------------VDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHh-------------hCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 567888888775543221 11 12469999999999999999999887
Q ss_pred ---------------CCceeeeccchhhhccccch--hhhH--------HHHHHHHHhcCCcEEEEcccccccCCCCCCC
Q 002159 733 ---------------SLNFLSVKGPELINMYIGES--EKNV--------RDIFQKARSARPCVIFFDELDSLAPARGASG 787 (958)
Q Consensus 733 ---------------~~~~i~v~~~~l~~~~~Ges--e~~v--------r~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~ 787 (958)
..+|+.+.........+|.- ++.+ ..++. .+...||||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhCC-------
Confidence 24555554333223333421 0000 01111 1233599999999886
Q ss_pred CCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHHHHHHHH
Q 002159 788 DSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 788 ~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~ 856 (958)
..+++.|+..|+.-. ....++.+|+|+|..+ .+.++|+. ||+..|.++.+.+.+.+.+|++
T Consensus 140 ------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 140 ------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred ------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHH
Confidence 356777777775210 1124588899888532 68899999 9999999987667788888876
Q ss_pred HH
Q 002159 857 AL 858 (958)
Q Consensus 857 ~~ 858 (958)
..
T Consensus 212 ~~ 213 (633)
T TIGR02442 212 RR 213 (633)
T ss_pred HH
Confidence 54
No 267
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=6.9e-08 Score=92.89 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcccccc--------------hhchHHHHHHHHHHhhcCCCeE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMASS--------------ERKTSAALAQAFNTAQSYSPTI 459 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~---~~~I~~~~l~s~~--------------~g~~e~~l~~~f~~A~~~~P~I 459 (958)
+..++|+|||||||||+++.+|+.+... ++.+++....... ........+..++.++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3569999999999999999999999765 7888776533221 2234566778888888777899
Q ss_pred EeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC-CCCCCh
Q 002159 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS-SEGLPP 538 (958)
Q Consensus 460 L~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~-~~~Ld~ 538 (958)
+++||++.+.... ......... . ..............+|+++|. ....+.
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 132 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLE-E-----------------LRLLLLLKSEKNLTVILTTNDEKDLGPA 132 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhh-h-----------------hHHHHHHHhcCCCEEEEEeCCCccCchh
Confidence 9999999876511 000000000 0 000011222566788888885 444555
Q ss_pred hhhccccEEEEcCCC
Q 002159 539 TIRRCFSHEISMGPL 553 (958)
Q Consensus 539 alrrrf~~eIsig~P 553 (958)
.++.+++..+.+..+
T Consensus 133 ~~~~~~~~~~~~~~~ 147 (148)
T smart00382 133 LLRRRFDRRIVLLLI 147 (148)
T ss_pred hhhhccceEEEecCC
Confidence 666677777776543
No 268
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=9e-08 Score=102.98 Aligned_cols=147 Identities=9% Similarity=0.129 Sum_probs=89.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg---~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~ 474 (958)
.+++|+||+|||||+|++++++++. ..+..++...... ......+.... ..+++|||++.+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 3699999999999999999998764 3345555433111 11111222211 2578999999875410
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc-EEEEEecCCCCC---CChhhhcccc--EEE
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ-VLLVAAADSSEG---LPPTIRRCFS--HEI 548 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~-ViVIaaTn~~~~---Ld~alrrrf~--~eI 548 (958)
.....+..+++.+.+ .++ -+++++++.|.. +.+++++|+. ..+
T Consensus 114 --------~~~~~lf~l~n~~~e-----------------------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 114 --------LWEMAIFDLYNRILE-----------------------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --------HHHHHHHHHHHHHHH-----------------------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 122334444444422 333 344444455544 5789999975 688
Q ss_pred EcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.+..|+.++|.++++........ .+ .++.++.++.+..|
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~---~l-~~~v~~~L~~~~~~ 201 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGF---EL-PEDVGRFLLKRLDR 201 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhhcC
Confidence 99999999999999886654322 22 24445666666554
No 269
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=1.2e-07 Score=111.38 Aligned_cols=169 Identities=22% Similarity=0.322 Sum_probs=109.7
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHH--------hcCCcEEEEcccc
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR--------SARPCVIFFDELD 777 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~--------~~~P~ILfiDEiD 777 (958)
++.+-+||+||||-||||||+.||..+|+.++.+++++-.+ ...++.....|- ..+|..|++||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 33455889999999999999999999999999999876432 222332222221 2679999999998
Q ss_pred cccCCCCCCCCCcchHHHHHHHHHHhhc-------CCCCCC-----------CcEEEEEecCCCCCCChhhcCcCCccce
Q 002159 778 SLAPARGASGDSGGVMDRVVSQMLAEID-------GLNDSS-----------QDLFIIGASNRPDLIDPALLRPGRFDKL 839 (958)
Q Consensus 778 ~l~~~r~~~~~~~~~~~rv~~~LL~~ld-------g~~~~~-----------~~v~VI~aTNrp~~ldpaLlrpgRfd~~ 839 (958)
.-. ...+..++..+. |-.... =..-||+.+|. +.-|||+.---|.++
T Consensus 398 Ga~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 398 GAP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEI 462 (877)
T ss_pred CCc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEE
Confidence 433 223334443332 221100 01347777775 445888543358999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 002159 840 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKR 900 (958)
Q Consensus 840 I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r 900 (958)
|+|.. |......+=|+....+-.+ ..|...|+..| .++..||++.++.-.+.|.+.
T Consensus 463 i~f~~-p~~s~Lv~RL~~IC~rE~m--r~d~~aL~~L~--el~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 463 IAFVP-PSQSRLVERLNEICHRENM--RADSKALNALC--ELTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred EEecC-CChhHHHHHHHHHHhhhcC--CCCHHHHHHHH--HHhcchHHHHHHHHHHHHHhc
Confidence 99985 6666666666666655444 24555666654 456789999999877777543
No 270
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.74 E-value=2.2e-07 Score=101.22 Aligned_cols=120 Identities=24% Similarity=0.338 Sum_probs=84.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcccccchhchHHHHHHHHHHhhcC-----CCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMASSERKTSAALAQAFNTAQSY-----SPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~---~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~-----~P~IL~iDeid~L~ 469 (958)
.+++|.||||||||||+|.++....-+ |++++.. ......+|.+|+.++.. ...||||||++.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 358999999999999999999988666 6777653 33456789999988743 56899999999886
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecC--CCCCCChhhhccccEE
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD--SSEGLPPTIRRCFSHE 547 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn--~~~~Ld~alrrrf~~e 547 (958)
..+ |. .++ ..+..+.|++||+|. ..-.+..++.+|. +.
T Consensus 236 ksQ--------QD-----------~fL--------------------P~VE~G~I~lIGATTENPSFqln~aLlSRC-~V 275 (554)
T KOG2028|consen 236 KSQ--------QD-----------TFL--------------------PHVENGDITLIGATTENPSFQLNAALLSRC-RV 275 (554)
T ss_pred hhh--------hh-----------ccc--------------------ceeccCceEEEecccCCCccchhHHHHhcc-ce
Confidence 521 10 111 012267899999984 3456778888864 45
Q ss_pred EEcCCCCHHHHHHHHHH
Q 002159 548 ISMGPLTEQQRVEMLSQ 564 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ 564 (958)
+-........-..|+..
T Consensus 276 fvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMR 292 (554)
T ss_pred eEeccCCHHHHHHHHHH
Confidence 55555556666666655
No 271
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=7.5e-08 Score=118.18 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=86.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh-----cCCCeEEeecchhhhhhcc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ-----SYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~-----~~~P~IL~iDeid~L~~~~ 472 (958)
.+++|+|||||||||+++++|+.++.+++.+++... + ...++..+..+. .....++||||+|.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 368999999999999999999999999988887531 1 122333333331 124579999999987541
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC--CCCCChhhhccccEEEEc
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS--SEGLPPTIRRCFSHEISM 550 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~--~~~Ld~alrrrf~~eIsi 550 (958)
....|...++ .+.+++|++|+. ...+++++++|. ..+.+
T Consensus 125 ---------------qQdaLL~~lE-----------------------~g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l 165 (725)
T PRK13341 125 ---------------QQDALLPWVE-----------------------NGTITLIGATTENPYFEVNKALVSRS-RLFRL 165 (725)
T ss_pred ---------------HHHHHHHHhc-----------------------CceEEEEEecCCChHhhhhhHhhccc-cceec
Confidence 1111222221 456788877643 246788998884 56899
Q ss_pred CCCCHHHHHHHHHHhcc
Q 002159 551 GPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 551 g~Pde~qR~~Il~~ll~ 567 (958)
++++.+++..+++..+.
T Consensus 166 ~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 166 KSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998875
No 272
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=3.6e-07 Score=109.90 Aligned_cols=173 Identities=16% Similarity=0.279 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEY 428 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I 428 (958)
+.+++.|...+.- .+.+..+||+||+|+|||++++.+|+.+.. +++++
T Consensus 22 ~~v~~~L~~~i~~--------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei 93 (559)
T PRK05563 22 EHITKTLKNAIKQ--------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI 93 (559)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence 3556666666542 123456899999999999999999998752 33444
Q ss_pred ecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 429 ~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
+..+ +.....++++.+.+.. ....|++|||+|.+.. ..+..+++.+.+.
T Consensus 94 daas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKtLEep------ 146 (559)
T PRK05563 94 DAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKTLEEP------ 146 (559)
T ss_pred eccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHHhcCC------
Confidence 3321 2344556666666542 2346999999997753 1234444433221
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
...+++|.+|+.+..+++.+++|. ..+.+..|+..+-...++..+++... ..+ ...+..
T Consensus 147 ----------------p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi---~i~-~~al~~ 205 (559)
T PRK05563 147 ----------------PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGI---EYE-DEALRL 205 (559)
T ss_pred ----------------CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 456788888888999999999886 56889999999988888887765433 122 334566
Q ss_pred HhhhcCCCChhhHHHHHH
Q 002159 585 IIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 585 la~~t~Gfv~~DL~~Lv~ 602 (958)
++..+.| ..+|...++.
T Consensus 206 ia~~s~G-~~R~al~~Ld 222 (559)
T PRK05563 206 IARAAEG-GMRDALSILD 222 (559)
T ss_pred HHHHcCC-CHHHHHHHHH
Confidence 6766655 4444444443
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.9e-07 Score=110.76 Aligned_cols=172 Identities=20% Similarity=0.357 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------------
Q 002159 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------- 424 (958)
Q Consensus 372 ~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~--------------------------- 424 (958)
++.+++.|...+.-- +.+..+||+||+|+||||+++++|+.++..
T Consensus 21 Qe~vv~~L~~~l~~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 21 QEHVVQALTNALTQQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred cHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 445666666665422 233457999999999999999999998641
Q ss_pred --EEEEecCcccccchhchHHHHHHHHHHhhcCCC-----eEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcC
Q 002159 425 --VVEYSCHNLMASSERKTSAALAQAFNTAQSYSP-----TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497 (958)
Q Consensus 425 --~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P-----~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~ 497 (958)
+++++.. .......++.+.+.+. +.| .|++|||+|.+.. ..+..+++.+.+
T Consensus 93 ~D~~eldaa------s~~~Vd~iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~---------------~a~NaLLKtLEE 150 (618)
T PRK14951 93 VDYTELDAA------SNRGVDEVQQLLEQAV-YKPVQGRFKVFMIDEVHMLTN---------------TAFNAMLKTLEE 150 (618)
T ss_pred CceeecCcc------cccCHHHHHHHHHHHH-hCcccCCceEEEEEChhhCCH---------------HHHHHHHHhccc
Confidence 2222221 1123345666665544 333 5999999998764 123344433322
Q ss_pred CCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC
Q 002159 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (958)
Q Consensus 498 ~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~ 577 (958)
....+.+|.+|+.+..+.+.+++|. ..+.+..++..+....++..+.+... ..+
T Consensus 151 ----------------------PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi---~ie 204 (618)
T PRK14951 151 ----------------------PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV---PAE 204 (618)
T ss_pred ----------------------CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC---CCC
Confidence 1466778888888889998898885 78899999998888888877654432 122
Q ss_pred cHHHHHHHhhhcCCCChhhHHHHH
Q 002159 578 SEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 578 ~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
...+..++..+.| ..+|...++
T Consensus 205 -~~AL~~La~~s~G-slR~al~lL 226 (618)
T PRK14951 205 -PQALRLLARAARG-SMRDALSLT 226 (618)
T ss_pred -HHHHHHHHHHcCC-CHHHHHHHH
Confidence 3346667766665 334444443
No 274
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=7.7e-08 Score=116.55 Aligned_cols=183 Identities=19% Similarity=0.285 Sum_probs=118.8
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC----------------
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------------- 734 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---------------- 734 (958)
+..|+++.|.+.+++.+...+. .+ +.+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~----------~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIA----------TN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 3579999999998887765542 11 22455899999999999999999998752
Q ss_pred ---------ceeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHH
Q 002159 735 ---------NFLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 801 (958)
Q Consensus 735 ---------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL 801 (958)
+++.+++.. ..+-..++++.+.++.. ...|++|||+|.+. ....+.|+
T Consensus 82 ~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-------------~~a~naLL 142 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-------------QAAFNAFL 142 (614)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-------------HHHHHHHH
Confidence 222222210 01123566776665432 24599999998884 24577888
Q ss_pred HhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHhhCCCC
Q 002159 802 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPN 880 (958)
Q Consensus 802 ~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~~~t~g 880 (958)
..|+.. ....++|++|+.+..|-++|++ |+. .+.|.. ++.+.-..+++...++..+.-+ ..+..|+..+ |
T Consensus 143 K~LEep---p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~-ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s--~ 213 (614)
T PRK14971 143 KTLEEP---PSYAIFILATTEKHKILPTILS--RCQ-IFDFNR-IQVADIVNHLQYVASKEGITAEPEALNVIAQKA--D 213 (614)
T ss_pred HHHhCC---CCCeEEEEEeCCchhchHHHHh--hhh-eeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C
Confidence 888864 2455566666677888899988 875 577774 5566666666666555444322 2367788773 4
Q ss_pred CCHHHHHHHHHH
Q 002159 881 FTGADMYALCAD 892 (958)
Q Consensus 881 ~sGaDi~~l~~~ 892 (958)
-+-+++.+++..
T Consensus 214 gdlr~al~~Lek 225 (614)
T PRK14971 214 GGMRDALSIFDQ 225 (614)
T ss_pred CCHHHHHHHHHH
Confidence 455555555443
No 275
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.7e-07 Score=112.97 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=99.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE-ecCc--------cc--ccchhchHHHHHHHHHHhhc---
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVV-------EY-SCHN--------LM--ASSERKTSAALAQAFNTAQS--- 454 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~-------~I-~~~~--------l~--s~~~g~~e~~l~~~f~~A~~--- 454 (958)
.+..+||+||+||||||++|++|+.++.... .+ +|.. +. ..........++++.+.+..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 3445799999999999999999999875311 00 0100 00 00001223345555544431
Q ss_pred -CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC
Q 002159 455 -YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS 533 (958)
Q Consensus 455 -~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~ 533 (958)
....|++|||+|.+.. ..+..+|+.+.+. ...+++|.+|+.+
T Consensus 117 ~gk~KViIIDEAh~LT~---------------eAqNALLKtLEEP----------------------P~~vrFILaTTe~ 159 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSR---------------SSFNALLKTLEEP----------------------PEHVKFLLATTDP 159 (944)
T ss_pred cCCcEEEEEechHhcCH---------------HHHHHHHHHHhcc----------------------CCCeEEEEECCCc
Confidence 2346999999998854 2234444433221 5677888889899
Q ss_pred CCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 534 EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 534 ~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
..|.+.+++|. ..+.+..++..+-.+.++..+..... .. ....+..++..+.|- .++...++
T Consensus 160 ~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI---~~-edeAL~lIA~~S~Gd-~R~ALnLL 221 (944)
T PRK14949 160 QKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL---PF-EAEALTLLAKAANGS-MRDALSLT 221 (944)
T ss_pred hhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCCC-HHHHHHHH
Confidence 99999999875 77999999999888888776654322 11 133456666666552 23333443
No 276
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.72 E-value=3.9e-08 Score=110.60 Aligned_cols=164 Identities=23% Similarity=0.402 Sum_probs=102.4
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC-------ceee-ec
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL-------NFLS-VK 740 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~-------~~i~-v~ 740 (958)
.+...|.+|.|++++|..+.-.... +.-.+++|.|++|||||++|++++..+.. +|.. -+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3456788999999999887544321 12357999999999999999999877631 2220 00
Q ss_pred cchhhh--------------------cc----ccchhhh------HHHHHHHHH---------hcCCcEEEEcccccccC
Q 002159 741 GPELIN--------------------MY----IGESEKN------VRDIFQKAR---------SARPCVIFFDELDSLAP 781 (958)
Q Consensus 741 ~~~l~~--------------------~~----~Gese~~------vr~lf~~A~---------~~~P~ILfiDEiD~l~~ 781 (958)
.+++.. .| .|.++.. +...|.... .+...+||+||++.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 011110 00 1112221 111222111 2234699999998886
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcC---------CC-CCCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHH
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDG---------LN-DSSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSY 850 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg---------~~-~~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~ 850 (958)
..+.+.|+..|+. .. ....++++|+|.|..+ .+.++|+. ||...+.++.|.+.+.
T Consensus 158 ------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 158 ------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred ------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 3455666666642 11 0124577787777555 58999999 9999999998666789
Q ss_pred HHHHHHHHH
Q 002159 851 RERVLKALT 859 (958)
Q Consensus 851 r~~Il~~~~ 859 (958)
+.+|++...
T Consensus 224 e~~il~~~~ 232 (350)
T CHL00081 224 RVKIVEQRT 232 (350)
T ss_pred HHHHHHhhh
Confidence 999998753
No 277
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.70 E-value=1.5e-07 Score=100.13 Aligned_cols=153 Identities=16% Similarity=0.277 Sum_probs=92.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchH-HHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTS-AALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e-~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
.+.||||+|+|||.|++++++++ +..++++++.++...+..... ..+.+..... ...-+++||+++.+..+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-
Confidence 48999999999999999999875 456888887765543322211 1111211222 24578999999988652
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC---CChhhhccccE--E
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH--E 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~---Ld~alrrrf~~--e 547 (958)
.....++-.+++.+.+ .++.+|+++...|.. +++.+++||.. .
T Consensus 113 ---------~~~q~~lf~l~n~~~~-----------------------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~ 160 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIE-----------------------SGKQLILTSDRPPSELSGLLPDLRSRLSWGLV 160 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----------------------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEE
T ss_pred ---------hHHHHHHHHHHHHHHh-----------------------hCCeEEEEeCCCCccccccChhhhhhHhhcch
Confidence 1133455555555432 445556666556554 56788888654 7
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~ 590 (958)
+.+..||.+.|.+|++..+..... +.+ ++.++.++.+..
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~---~l~-~~v~~~l~~~~~ 199 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGI---ELP-EEVIEYLARRFR 199 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT-----S--HHHHHHHHHHTT
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCC---CCc-HHHHHHHHHhhc
Confidence 889999999999999998866543 222 334555565543
No 278
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=2.1e-07 Score=100.02 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=93.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~ 474 (958)
..++|+||+|||||+|+++++.++ |.....++..++ ...+...++... ...+++|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998765 555566654332 223334444433 34689999999775411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec-CCCCCC---Chhhhccc--cEEE
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA-DSSEGL---PPTIRRCF--SHEI 548 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT-n~~~~L---d~alrrrf--~~eI 548 (958)
.....+-.++++..+ .+ .-+|.|+ ..|..+ .+++++|| ...+
T Consensus 110 --------~~~~~lf~l~n~~~~-----------------------~~-~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~ 157 (233)
T PRK08727 110 --------EDEVALFDFHNRARA-----------------------AG-ITLLYTARQMPDGLALVLPDLRSRLAQCIRI 157 (233)
T ss_pred --------HHHHHHHHHHHHHHH-----------------------cC-CeEEEECCCChhhhhhhhHHHHHHHhcCceE
Confidence 011222233332211 22 2244444 456555 68899986 5678
Q ss_pred EcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
.++.|+.++|.+|++........ ..+ ++.+..++.++. +|+..+
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~~l---~l~-~e~~~~La~~~~----rd~r~~ 201 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRRGL---ALD-EAAIDWLLTHGE----RELAGL 201 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhCC----CCHHHH
Confidence 99999999999999986654322 122 445667777765 455544
No 279
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.68 E-value=2.8e-08 Score=116.09 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=125.2
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce-------e-----
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF-------L----- 737 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~-------i----- 737 (958)
.+-.|+++.|.+.+.+.|...+..- +-....+|.||.|+||||+||.+|..+++.- .
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 3456899999999998887665211 2245689999999999999999999875431 0
Q ss_pred -eecc---chhhhc--cccchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 002159 738 -SVKG---PELINM--YIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 738 -~v~~---~~l~~~--~~Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~ 807 (958)
.+.. .+++.. -...+-..+|++-+++. ...+.|++|||+|.|. ....|.||+.|+.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLKTLEE- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLKTLEE- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhccccc-
Confidence 0100 111100 00112345777777765 3456799999999885 4578999998874
Q ss_pred CCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhhCCCCCCHHHH
Q 002159 808 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADM 886 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~~t~g~sGaDi 886 (958)
...+|.+|.||..|+.+++.+++ |+.+--+=.+ +.+.-..-|+....+..+..+. -+..+|+. .+ =+.+|.
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri--~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~-a~-Gs~RDa 217 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQRFDFKRL--DLEEIAKHLAAILDKEGINIEEDALSLIARA-AE-GSLRDA 217 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccccccccCC--CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH-cC-CChhhH
Confidence 46789889999999999999988 8765444444 3344444455555544443333 35556655 23 244676
Q ss_pred HHHHHHHHHH
Q 002159 887 YALCADAWFH 896 (958)
Q Consensus 887 ~~l~~~A~~~ 896 (958)
..+...|...
T Consensus 218 lslLDq~i~~ 227 (515)
T COG2812 218 LSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHc
Confidence 6666655443
No 280
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.4e-08 Score=107.40 Aligned_cols=164 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--ccccc-hhchHHHHHHHHHHhhcCCCeEEeecchhhh
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN--LMASS-ERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~--l~s~~-~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
+.++.++-+.|.||+|+||||++|+||+-..+.-+.|-..+ +.... ....+.++.-+||... .-|-.-+.|+|- +
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA-LF~HmtVa~NIA-F 100 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA-LFPHMTVADNIA-F 100 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh-hcccchHHhhhh-h
Confidence 34455666999999999999999999999988766654332 11100 0111222333344333 223333344442 2
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEE
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eI 548 (958)
+.+.... ..........+.++|+-+. +. .+-.|+...+
T Consensus 101 Gl~~~~~--~p~~~~~r~rv~elL~lvq---------------------------------------L~-~la~ryP~QL 138 (345)
T COG1118 101 GLKVRKE--RPSEAEIRARVEELLRLVQ---------------------------------------LE-GLADRYPAQL 138 (345)
T ss_pred ccccccc--CCChhhHHHHHHHHHHHhc---------------------------------------cc-chhhcCchhc
Confidence 2211111 0111123344554443321 11 3345788999
Q ss_pred EcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
|+| ++||+++++.+...+..|.+|+.. ..||.++-.++.. |+.||.....+
T Consensus 139 SGG---QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 139 SGG---QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred ChH---HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 999 999999999999999888777654 4577777776655 89999876544
No 281
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=2.1e-07 Score=111.75 Aligned_cols=173 Identities=19% Similarity=0.279 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEe
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYS 429 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~ 429 (958)
.+++.|...+.. -+.+..+||+||+|+||||+++++|+.++.. +++++
T Consensus 23 ~vv~~L~~ai~~--------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 23 HVVKALQNALDE--------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHHHHHHHHHc--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 455556555431 1345568999999999999999999987542 12222
Q ss_pred cCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccc
Q 002159 430 CHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE 505 (958)
Q Consensus 430 ~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~ 505 (958)
.. .......++.+++.+.. ....|++|||+|.+.. ..+..+++.+.+
T Consensus 95 aA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKtLEE-------- 145 (709)
T PRK08691 95 AA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKTLEE-------- 145 (709)
T ss_pred cc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHHHHh--------
Confidence 11 12234456676665432 2346999999987643 123334433321
Q ss_pred ccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHH
Q 002159 506 ESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDI 585 (958)
Q Consensus 506 ~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~l 585 (958)
....+.+|.+|+.+..+.+.+++|+ ..+.+..++..+-...++..+..... .++ ...+..+
T Consensus 146 --------------Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id-~eAL~~I 206 (709)
T PRK08691 146 --------------PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKI---AYE-PPALQLL 206 (709)
T ss_pred --------------CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCC---CcC-HHHHHHH
Confidence 1456788888889999999999876 67888889999988888877765433 122 3345666
Q ss_pred hhhcCCCChhhHHHHHHH
Q 002159 586 IGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 586 a~~t~Gfv~~DL~~Lv~e 603 (958)
++.+.| ..+|+..++..
T Consensus 207 a~~A~G-slRdAlnLLDq 223 (709)
T PRK08691 207 GRAAAG-SMRDALSLLDQ 223 (709)
T ss_pred HHHhCC-CHHHHHHHHHH
Confidence 666544 34455555443
No 282
>PRK06620 hypothetical protein; Validated
Probab=98.67 E-value=1.2e-07 Score=100.50 Aligned_cols=132 Identities=13% Similarity=0.232 Sum_probs=85.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
..++||||+|||||+|++++++..+..+.. .... . ...+ ....+++|||++.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH-----hcCCEEEEeccccchH-------
Confidence 469999999999999999999987653322 1100 0 0111 1236889999984411
Q ss_pred CCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC--CChhhhccccE--EEEcCCC
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG--LPPTIRRCFSH--EISMGPL 553 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~--Ld~alrrrf~~--eIsig~P 553 (958)
..+-.+++.+.+ .+..++++++..|.. + +++++|+.. .+.+..|
T Consensus 100 --------~~lf~l~N~~~e-----------------------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~p 147 (214)
T PRK06620 100 --------PALLHIFNIINE-----------------------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSP 147 (214)
T ss_pred --------HHHHHHHHHHHh-----------------------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCC
Confidence 234455555432 455677777766554 5 789998742 6899999
Q ss_pred CHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC
Q 002159 554 TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (958)
Q Consensus 554 de~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~ 590 (958)
|.+.|.++++..+..... . . .++.++.++.+..
T Consensus 148 d~~~~~~~l~k~~~~~~l-~--l-~~ev~~~L~~~~~ 180 (214)
T PRK06620 148 DDELIKILIFKHFSISSV-T--I-SRQIIDFLLVNLP 180 (214)
T ss_pred CHHHHHHHHHHHHHHcCC-C--C-CHHHHHHHHHHcc
Confidence 999999999888764322 1 1 1334556666554
No 283
>PHA02244 ATPase-like protein
Probab=98.67 E-value=2e-07 Score=104.42 Aligned_cols=129 Identities=14% Similarity=0.167 Sum_probs=80.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC----cccccchhchHHHHH-HHHHHhhcCCCeEEeecchhhhhhc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH----NLMASSERKTSAALA-QAFNTAQSYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~----~l~s~~~g~~e~~l~-~~f~~A~~~~P~IL~iDeid~L~~~ 471 (958)
+.+|+|+||+|||||++++++|..++.+++.+++. ++.+. .... +.+. .-|-.|. ....+++|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~-i~~~-g~~~dgpLl~A~-~~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGF-IDAN-GKFHETPFYEAF-KKGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccc-cccc-ccccchHHHHHh-hcCCEEEEeCcCcCCH-
Confidence 34599999999999999999999999999998853 11110 0000 0111 1122222 3568999999997654
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhh-hhhcCcEEEEEecCCC-----------CCCChh
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE-KICRQQVLLVAAADSS-----------EGLPPT 539 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~-~~~~~~ViVIaaTn~~-----------~~Ld~a 539 (958)
.+...|..+++.. + +....+ .....++.+|+|+|.. ..++++
T Consensus 195 ---------------~vq~~L~~lLd~r----------~-l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 195 ---------------EALIIINSAIANK----------F-FDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred ---------------HHHHHHHHHhccC----------e-EEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 1222333333211 0 011111 1125678999999973 567899
Q ss_pred hhccccEEEEcCCCCHH
Q 002159 540 IRRCFSHEISMGPLTEQ 556 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~ 556 (958)
+++||. .+.++.|++.
T Consensus 249 llDRFv-~I~~dyp~~~ 264 (383)
T PHA02244 249 TLDRFA-PIEFDYDEKI 264 (383)
T ss_pred HHhhcE-EeeCCCCcHH
Confidence 999996 5999988743
No 284
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.67 E-value=2.5e-07 Score=109.39 Aligned_cols=140 Identities=22% Similarity=0.307 Sum_probs=83.1
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC------------------
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL------------------ 734 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~------------------ 734 (958)
.++++.|...+++.+.- ....+..++|+||||||||++++++++.+..
T Consensus 190 d~~dv~Gq~~~~~al~~--------------aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~ 255 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI--------------AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGK 255 (499)
T ss_pred CHHHhcCcHHHHhhhhh--------------hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhh
Confidence 56777777766554322 2344678999999999999999999975421
Q ss_pred ----------ceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhh
Q 002159 735 ----------NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEI 804 (958)
Q Consensus 735 ----------~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~l 804 (958)
+|.....+......+|.....-...+..| ...+|||||++.+. ..++..|+..|
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~-------------~~~~~~L~~~L 319 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK-------------RSVLDALREPI 319 (499)
T ss_pred hccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC-------------HHHHHHHHHHH
Confidence 11111111000011121110111123333 33699999998764 34566666666
Q ss_pred cCCC----------CCCCcEEEEEecCCC------C-----------------CCChhhcCcCCccceeeccC
Q 002159 805 DGLN----------DSSQDLFIIGASNRP------D-----------------LIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 805 dg~~----------~~~~~v~VI~aTNrp------~-----------------~ldpaLlrpgRfd~~I~v~~ 844 (958)
+.-. ....++.+|+|+|.- + .|...|+. |||-.+.++.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 4321 012468899999862 1 47778888 9999999984
No 285
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.7e-07 Score=108.21 Aligned_cols=162 Identities=19% Similarity=0.301 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------cEEEEec
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-----------------------HVVEYSC 430 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~-----------------------~~~~I~~ 430 (958)
.+++.|...+.- -+.+..+||+||||+||||+++++|+.+.. .+.+++.
T Consensus 21 ~v~~~L~~~i~~--------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 21 HVKEVLLAALRQ--------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 455556555532 123445799999999999999999999853 1344443
Q ss_pred CcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccc
Q 002159 431 HNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEE 506 (958)
Q Consensus 431 ~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~ 506 (958)
.+ ......++++.+.+.. ..+.+++|||+|.+.. ..+..+++.+.+
T Consensus 93 ~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~---------------~a~naLLk~LEe--------- 142 (504)
T PRK14963 93 AS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK---------------SAFNALLKTLEE--------- 142 (504)
T ss_pred cc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH---------------HHHHHHHHHHHh---------
Confidence 21 1223445554443331 2457999999986632 123334433321
Q ss_pred cCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHh
Q 002159 507 SHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDII 586 (958)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la 586 (958)
....+++|.+|+.+..+.+.+++|. ..+.+..|+..+-...++..+.+... +. ....+..++
T Consensus 143 -------------p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi---~i-~~~Al~~ia 204 (504)
T PRK14963 143 -------------PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGR---EA-EPEALQLVA 204 (504)
T ss_pred -------------CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHH
Confidence 1456788888888999999999875 57899999999999888887765432 22 234466677
Q ss_pred hhcCC
Q 002159 587 GQTSG 591 (958)
Q Consensus 587 ~~t~G 591 (958)
..+.|
T Consensus 205 ~~s~G 209 (504)
T PRK14963 205 RLADG 209 (504)
T ss_pred HHcCC
Confidence 66654
No 286
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.8e-07 Score=106.06 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=113.2
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc----e--eee-----
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN----F--LSV----- 739 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~----~--i~v----- 739 (958)
+..++++.|.+.++..+...+ ..+ +.+..+||+||+|+|||++|+.+|..+... + ...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~----------~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAY----------REG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHH----------HcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 345778889888887775543 111 224469999999999999999999987441 0 000
Q ss_pred cc-----------chhhhc--cccc------h---hhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchH
Q 002159 740 KG-----------PELINM--YIGE------S---EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVM 793 (958)
Q Consensus 740 ~~-----------~~l~~~--~~Ge------s---e~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~ 793 (958)
.+ +++..- -.++ . -..+|++-+... .....|++|||+|.+.
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------- 154 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------- 154 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-------------
Confidence 00 111100 0001 0 123444433322 3455799999999885
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHH
Q 002159 794 DRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSI 873 (958)
Q Consensus 794 ~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~l 873 (958)
....|.||+.|+.. ..+.++|..|+.|+.+.|.++. |+ ..+.++. ++.++-..+++........ .+..+..+
T Consensus 155 ~~aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~p-l~~~~~~~~L~~~~~~~~~-~~~~~~~i 226 (351)
T PRK09112 155 RNAANAILKTLEEP---PARALFILISHSSGRLLPTIRS--RC-QPISLKP-LDDDELKKALSHLGSSQGS-DGEITEAL 226 (351)
T ss_pred HHHHHHHHHHHhcC---CCCceEEEEECChhhccHHHHh--hc-cEEEecC-CCHHHHHHHHHHhhcccCC-CHHHHHHH
Confidence 23567788888864 2345555567889988899988 99 5888884 7778777887764322221 12224556
Q ss_pred HhhCCCCCCHHHHHHHHHHH
Q 002159 874 AKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 874 a~~~t~g~sGaDi~~l~~~A 893 (958)
++.+ |-+.....++.+.+
T Consensus 227 ~~~s--~G~pr~Al~ll~~~ 244 (351)
T PRK09112 227 LQRS--KGSVRKALLLLNYG 244 (351)
T ss_pred HHHc--CCCHHHHHHHHhcC
Confidence 6652 33333444444433
No 287
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.66 E-value=5e-07 Score=103.09 Aligned_cols=148 Identities=17% Similarity=0.309 Sum_probs=97.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
.+..+||+||||+|||+++++++..+... ++.++..+ ......++.+++.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~ 108 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDN 108 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHH
Confidence 34568999999999999999999987421 23333221 1233456667766
Q ss_pred hhcC----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~~~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
+... ...+++|||+|.+.. .....+++.+.+ ....+++|
T Consensus 109 ~~~~p~~~~~~vviidea~~l~~---------------~~~~~Ll~~le~----------------------~~~~~~lI 151 (355)
T TIGR02397 109 VKYAPSSGKYKVYIIDEVHMLSK---------------SAFNALLKTLEE----------------------PPEHVVFI 151 (355)
T ss_pred HhcCcccCCceEEEEeChhhcCH---------------HHHHHHHHHHhC----------------------CccceeEE
Confidence 5532 235999999987743 112333333311 14567778
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.+|+++..+.+.+++|+ ..+.+..|++.+...+++..+++... ..+ ...+..++..+.|
T Consensus 152 l~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~-~~a~~~l~~~~~g 210 (355)
T TIGR02397 152 LATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGI---KIE-DEALELIARAADG 210 (355)
T ss_pred EEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 88888888888999886 57899999999999999887765432 122 3345566665544
No 288
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=107.36 Aligned_cols=142 Identities=25% Similarity=0.349 Sum_probs=86.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHH------HHHhhc--CCC--eEEeecchhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQA------FNTAQS--YSP--TILLLRDFDV 467 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~------f~~A~~--~~P--~IL~iDeid~ 467 (958)
..+||.||||+|||++++.+|..++..++.|.|..-+.....-........ |..-.+ ... +++++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 449999999999999999999999999999999753322111111111110 100000 011 3999999986
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhh-hhhcCcEEEEEecC-----CCCCCChhhh
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE-KICRQQVLLVAAAD-----SSEGLPPTIR 541 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~-~~~~~~ViVIaaTn-----~~~~Ld~alr 541 (958)
..+ .+...|-+.++.. .-...+ .. .....+++||||.| .-..++++++
T Consensus 124 a~p----------------~~q~aLl~~l~e~----~vtv~~------~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 124 APP----------------EVQNALLEALEER----QVTVPG------LTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred CCH----------------HHHHHHHHHHhCc----EEEECC------cCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 544 2233333332210 000011 11 23468899999999 4456799999
Q ss_pred ccccEEEEcCCC-CHHHHHHHHHHh
Q 002159 542 RCFSHEISMGPL-TEQQRVEMLSQL 565 (958)
Q Consensus 542 rrf~~eIsig~P-de~qR~~Il~~l 565 (958)
+||...+.++.| ++.+...+....
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHHHhC
Confidence 999889999999 555555554443
No 289
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.66 E-value=1.5e-08 Score=108.76 Aligned_cols=172 Identities=20% Similarity=0.199 Sum_probs=92.4
Q ss_pred HHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--EEEecCcccccchhchHHHHHHHHHHhhc
Q 002159 377 KILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSCHNLMASSERKTSAALAQAFNTAQS 454 (958)
Q Consensus 377 k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~--~~I~~~~l~s~~~g~~e~~l~~~f~~A~~ 454 (958)
+.+.+.++..+.++.+ +.|.||||||||||+|++++.+.+.- +.+++.++......+....+.-+-|..
T Consensus 15 ~~il~~ls~~i~~G~i-------~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~-- 85 (258)
T COG1120 15 KPILDDLSFSIPKGEI-------TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP-- 85 (258)
T ss_pred eeEEecceEEecCCcE-------EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC--
Confidence 3444445555555555 99999999999999999999998765 455555544332222222222222221
Q ss_pred CCCeEEeecchhhhhhcccCC-CCCC-ccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC
Q 002159 455 YSPTILLLRDFDVFRNLVSNE-SLPN-DQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS 532 (958)
Q Consensus 455 ~~P~IL~iDeid~L~~~~s~~-~~~~-~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~ 532 (958)
..|.-+-.-|+=.+.. ... +-.. ........+...|+.+
T Consensus 86 ~~~~~~tV~d~V~~GR--~p~~~~~~~~~~~D~~~v~~aL~~~------------------------------------- 126 (258)
T COG1120 86 SAPFGLTVYELVLLGR--YPHLGLFGRPSKEDEEIVEEALELL------------------------------------- 126 (258)
T ss_pred CCCCCcEEeehHhhcC--CcccccccCCCHhHHHHHHHHHHHh-------------------------------------
Confidence 1222222222212221 110 0000 0000111233333222
Q ss_pred CCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcH-----------HHHHHHhhhcC---CCChhhHH
Q 002159 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE-----------EFVKDIIGQTS---GFMPRDLH 598 (958)
Q Consensus 533 ~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~-----------~~L~~la~~t~---Gfv~~DL~ 598 (958)
++. .+..|...++|+| |+||.-|++++.++++.+.+|+... +.+.++.++.. =++.||+.
T Consensus 127 --~~~-~la~r~~~~LSGG---erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 127 --GLE-HLADRPVDELSGG---ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred --CcH-HHhcCcccccChh---HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 111 3455667899999 9999999999999999887776541 23344443311 17888887
Q ss_pred HHHH
Q 002159 599 ALVA 602 (958)
Q Consensus 599 ~Lv~ 602 (958)
...+
T Consensus 201 ~A~r 204 (258)
T COG1120 201 LAAR 204 (258)
T ss_pred HHHH
Confidence 6443
No 290
>PRK09087 hypothetical protein; Validated
Probab=98.65 E-value=6.5e-07 Score=95.69 Aligned_cols=143 Identities=18% Similarity=0.291 Sum_probs=88.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 788 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~ 788 (958)
..++|+||+|+|||+|+++++...+..++.. .++.. +++..... .+|+|||++.+.. +
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCCC------C
Confidence 4599999999999999999998766554333 12211 11222111 4889999997631 1
Q ss_pred CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCcc--ceeeccCCCCHHHHHHHHHHHHhhcc
Q 002159 789 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKALTRKFK 863 (958)
Q Consensus 789 ~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~~~~~~~ 863 (958)
..-+-.+++.+. + .+..+||+++..|. ...|.|+. ||. ..+.+. ||+.+.|..|++...+...
T Consensus 103 -----~~~lf~l~n~~~---~-~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~-~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 103 -----ETGLFHLINSVR---Q-AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG-EPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred -----HHHHHHHHHHHH---h-CCCeEEEECCCChHHhccccccHHH--HHhCCceeecC-CCCHHHHHHHHHHHHHHcC
Confidence 111233333332 1 23456666665554 23678887 886 566777 5899999999998887643
Q ss_pred CC-CCcCHHHHHhhCCCCCCHHHHHHHH
Q 002159 864 LL-EDVSLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 864 ~~-~d~~l~~la~~~t~g~sGaDi~~l~ 890 (958)
+. ++.-++.|++++ .++++.+.
T Consensus 171 ~~l~~ev~~~La~~~-----~r~~~~l~ 193 (226)
T PRK09087 171 LYVDPHVVYYLVSRM-----ERSLFAAQ 193 (226)
T ss_pred CCCCHHHHHHHHHHh-----hhhHHHHH
Confidence 32 233467888885 25555554
No 291
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.65 E-value=2.8e-07 Score=99.09 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=91.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-c-----EEEEecCcccccch-hchHHHHHHHHHHh-----hcCCC-eEEeecc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGI-H-----VVEYSCHNLMASSE-RKTSAALAQAFNTA-----QSYSP-TILLLRD 464 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~-~-----~~~I~~~~l~s~~~-g~~e~~l~~~f~~A-----~~~~P-~IL~iDe 464 (958)
...|+|||||||||+.++++|.++.. + +.+.+.++-.+... .+......+.-..- ..+.| .|+++||
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEec
Confidence 34899999999999999999999854 2 22333333222111 11111111111111 11233 6999999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccc
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCF 544 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf 544 (958)
.|.+.. +-...|++.++.. ...+++|..||....|+..+.+|.
T Consensus 138 cdsmts----------------daq~aLrr~mE~~---------------------s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 138 CDSMTS----------------DAQAALRRTMEDF---------------------SRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred hhhhhH----------------HHHHHHHHHHhcc---------------------ccceEEEEEcCChhhCChHHHhhH
Confidence 998865 2334455554421 567899999999999999998874
Q ss_pred cEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 545 SHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 545 ~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
..+.+.......-...++........ +.+ ...++.++..+.|
T Consensus 181 -~KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d-~~al~~I~~~S~G 222 (346)
T KOG0989|consen 181 -QKFRFKKLKDEDIVDRLEKIASKEGV---DID-DDALKLIAKISDG 222 (346)
T ss_pred -HHhcCCCcchHHHHHHHHHHHHHhCC---CCC-HHHHHHHHHHcCC
Confidence 45556666665555555555544333 333 3346777777665
No 292
>PRK05642 DNA replication initiation factor; Validated
Probab=98.64 E-value=2.3e-07 Score=99.71 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=94.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~ 474 (958)
..++|+||+|+|||.|++++++++ +..+++++..+++... ....+.... .-+++||+++.+..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 468999999999999999999765 5677788876655321 122222222 2478999999775411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCC---Chhhhcccc--EEEE
Q 002159 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL---PPTIRRCFS--HEIS 549 (958)
Q Consensus 475 ~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L---d~alrrrf~--~eIs 549 (958)
....++-.+++.+.+ .+..++++++..+..+ .+++++||. ..+.
T Consensus 114 --------~~~~~Lf~l~n~~~~-----------------------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~ 162 (234)
T PRK05642 114 --------DWEEALFHLFNRLRD-----------------------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQ 162 (234)
T ss_pred --------HHHHHHHHHHHHHHh-----------------------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeee
Confidence 112345555544422 4566777777666443 588999974 5677
Q ss_pred cCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+..|+.+.|.++++........ .++ ++.++.++++..+
T Consensus 163 l~~~~~e~~~~il~~ka~~~~~---~l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 163 MRGLSDEDKLRALQLRASRRGL---HLT-DEVGHFILTRGTR 200 (234)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhcCC
Confidence 8999999999999955543322 122 3445556655443
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.64 E-value=4.5e-07 Score=112.17 Aligned_cols=141 Identities=18% Similarity=0.321 Sum_probs=87.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------cccchhc-------hHHHHHHHHHHhhcCCCeEEeec
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNL------MASSERK-------TSAALAQAFNTAQSYSPTILLLR 463 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l------~s~~~g~-------~e~~l~~~f~~A~~~~P~IL~iD 463 (958)
...+|+.||..+|||+++..+|.++|..|+.||-++- .+.|... .++.+- +|.. ..-.+++|
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLV----eAlR-~GyWIVLD 962 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLV----EALR-RGYWIVLD 962 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHH----HHHh-cCcEEEee
Confidence 3469999999999999999999999999999998652 2222211 233332 2332 34678899
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC------CCC
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE------GLP 537 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~------~Ld 537 (958)
|+. |++ ..|.++|+++++.. ..-|..+...-....+.+.+.||-|.|- .+.
T Consensus 963 ELN-LAp---------------TDVLEaLNRLLDDN-------RelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LS 1019 (4600)
T COG5271 963 ELN-LAP---------------TDVLEALNRLLDDN-------RELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLS 1019 (4600)
T ss_pred ccc-cCc---------------HHHHHHHHHhhccc-------cceecCCcceeeccCCCeeEEeecCCCccccchHHHH
Confidence 985 444 35667777776521 0111111111122244566666666553 456
Q ss_pred hhhhccccEEEEcCCCCHHHHHHHHHHhc
Q 002159 538 PTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 538 ~alrrrf~~eIsig~Pde~qR~~Il~~ll 566 (958)
.++|.||. ++.+..-.+.+...|++.-.
T Consensus 1020 rAFRNRFl-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1020 RAFRNRFL-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred HHHHhhhH-hhhcccCcHHHHHHHHhccC
Confidence 78888984 55555555888888877544
No 294
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.64 E-value=4.3e-08 Score=113.36 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=80.5
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccc-hhhhccccch-hhhH--HHHHHHHHhc---CCcEEEEcc
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGP-ELINMYIGES-EKNV--RDIFQKARSA---RPCVIFFDE 775 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~-~l~~~~~Ges-e~~v--r~lf~~A~~~---~P~ILfiDE 775 (958)
.-.+.+++|+||||||||++|++++...+. +|..+... ..-...+|.. -... ..-|...... ...++|+||
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecc
Confidence 345788999999999999999999997653 33322221 0111223321 0000 1122222211 234999999
Q ss_pred cccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-------CCCCcEEEEEecCCCC---CCChhhcCcCCccceeeccCC
Q 002159 776 LDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN-------DSSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVGVN 845 (958)
Q Consensus 776 iD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~-------~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd~~I~v~~p 845 (958)
|..+. ..+.+.||..|..-. ..-...++++|||... ...+|++- ||-..|.+|.|
T Consensus 116 I~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 116 IWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred cccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 96543 467788888883211 1112246666777432 23358888 99888999864
Q ss_pred CCHHHHHHHHHHH
Q 002159 846 SDVSYRERVLKAL 858 (958)
Q Consensus 846 pd~~~r~~Il~~~ 858 (958)
.+.+....|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 4456656676653
No 295
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-07 Score=105.18 Aligned_cols=98 Identities=33% Similarity=0.574 Sum_probs=76.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-ccccch-hhhHHHHHHHHH----hcCCcEEEEcccccccC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGES-EKNVRDIFQKAR----SARPCVIFFDELDSLAP 781 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~Ges-e~~vr~lf~~A~----~~~P~ILfiDEiD~l~~ 781 (958)
..+|||.||.|+|||+||+.||..++.+|...++..|-. .|+|+. |..+.+++..|. .++..|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 468999999999999999999999999999999988754 699986 556777777663 44557999999999984
Q ss_pred CCCCC---CCCcchHHHHHHHHHHhhcCC
Q 002159 782 ARGAS---GDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 782 ~r~~~---~~~~~~~~rv~~~LL~~ldg~ 807 (958)
+-.+. .|.+| +-+...||+.++|-
T Consensus 306 ~~~~i~~~RDVsG--EGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSG--EGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccc--hhHHHHHHHHhccc
Confidence 43221 12222 46788899999873
No 296
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=1.5e-08 Score=120.00 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=97.4
Q ss_pred CCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-ccccchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 388 CPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN-LMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 388 ~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~-l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
.+-.+.+..+..|.|+||||+|||||+|.+++.+++..+.|.+.. +.-.|..+....+ .+.--++|.+.
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l----------~~~~t~~d~l~ 408 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL----------DPDKTVLEELS 408 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc----------CccCcHHHHHH
Confidence 333444455555999999999999999999999988877666432 2222211111000 01112223222
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
...+ + .....+...|.++ .++.........
T Consensus 409 ~~~~---------~--~~e~~~r~~L~~f---------------------------------------~F~~~~~~~~v~ 438 (530)
T COG0488 409 EGFP---------D--GDEQEVRAYLGRF---------------------------------------GFTGEDQEKPVG 438 (530)
T ss_pred hhCc---------c--ccHHHHHHHHHHc---------------------------------------CCChHHHhCchh
Confidence 2211 0 0022333333332 233333344557
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChhhHHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVADA 604 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~DL~~Lv~eA 604 (958)
.+|+| |+.|+.+++.++.++..| |+|+++...|++....+.| +|+||+.++.+-+
T Consensus 439 ~LSGG---Ek~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 439 VLSGG---EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred hcCHh---HHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc
Confidence 89999 999999999999887766 6677778889999999999 9999999997654
No 297
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=5.3e-07 Score=107.26 Aligned_cols=147 Identities=17% Similarity=0.268 Sum_probs=94.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+..+||+||+|+||||+++++|+.+.. .+++++... ......++.+.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~ 111 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNI 111 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHH
Confidence 345899999999999999999998864 223333211 11122344444443
Q ss_pred hc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 QS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
.. ....|++|||+|.+.. .....+++.+.+ ....+++|.
T Consensus 112 ~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~LEe----------------------pp~~v~fIL 154 (546)
T PRK14957 112 QYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKTLEE----------------------PPEYVKFIL 154 (546)
T ss_pred HhhhhcCCcEEEEEechhhccH---------------HHHHHHHHHHhc----------------------CCCCceEEE
Confidence 31 2346999999987754 123333433321 145677888
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+|+.+..+.+.+++|. ..+.+..++..+-...++..+..... .. ....+..++..+.|
T Consensus 155 ~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi---~~-e~~Al~~Ia~~s~G 212 (546)
T PRK14957 155 ATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI---NS-DEQSLEYIAYHAKG 212 (546)
T ss_pred EECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCC
Confidence 8888899998888876 78999999998887777776654332 11 23456666666654
No 298
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=5.1e-07 Score=107.54 Aligned_cols=147 Identities=14% Similarity=0.268 Sum_probs=95.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+.++|++||+|+||||+|+++|..+.. +++++++.+ ......++.+...+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~ 111 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNI 111 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHH
Confidence 456899999999999999999999842 223333211 12234456665554
Q ss_pred hcC----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 QSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~~~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
... ...|++|||+|.+.. +....+++.+.+ ....+++|.
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKtLEE----------------------Pp~~tvfIL 154 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKTLEE----------------------PPKHVVFIF 154 (605)
T ss_pred HhchhhCCcEEEEEechHhCCH---------------HHHHHHHHHHHh----------------------CCCcEEEEE
Confidence 421 235899999997743 112233333221 145678888
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+|+.+..+.+.+++|+ ..+.+..|++.+....++..+..... ..+ ...+..++..+.|
T Consensus 155 ~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi---~Is-~eal~~La~lS~G 212 (605)
T PRK05896 155 ATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKI---KIE-DNAIDKIADLADG 212 (605)
T ss_pred ECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 8888999999999886 57899999999988888876654332 122 3335666666655
No 299
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.5e-07 Score=103.96 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=100.0
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc--ccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM--YIG 750 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~--~~G 750 (958)
.|+++.|.+.+++.+...+. .-+.+..+||+||+|+|||++|+++|..+-.....-.-+++..- +-|
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 47888898888877755431 11224568999999999999999999976321110011111110 011
Q ss_pred c--hhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 751 E--SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 751 e--se~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
. +-..+|++.+.+. .....|++||++|.+. ....|.||+.|+.. +.++++|.+|+.|+
T Consensus 71 ~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-------------~~a~naLLK~LEep---p~~t~~il~~~~~~ 134 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-------------EQAQNAFLKTIEEP---PKGVFIILLCENLE 134 (313)
T ss_pred CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------HHHHHHHHHHhcCC---CCCeEEEEEeCChH
Confidence 1 1234666655432 3345699999998874 34578899998854 35566666778899
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
.+-|.+++ |+. .+++.. ++.+.-..+++..
T Consensus 135 ~ll~TI~S--Rc~-~~~~~~-~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 QILDTIKS--RCQ-IYKLNR-LSKEEIEKFISYK 164 (313)
T ss_pred hCcHHHHh--hce-eeeCCC-cCHHHHHHHHHHH
Confidence 99999988 884 778875 5666655566544
No 300
>PRK04132 replication factor C small subunit; Provisional
Probab=98.61 E-value=3.9e-07 Score=112.53 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEec--CCCChhHHHHHHHHHHc-----CCceeeeccc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYG--PPGTGKTLLAKAVATEC-----SLNFLSVKGP 742 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~G--ppGtGKTtLakaiA~~~-----~~~~i~v~~~ 742 (958)
...-|+++.-.+.++... +.+-+..| +-+-+..| |++.||||+|+++|+++ +.+++.++++
T Consensus 538 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNAS 605 (846)
T PRK04132 538 NELYWDEITEVEELKGDF---IIYDLHVP---------GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNAS 605 (846)
T ss_pred cchhHHhhHhHHhccCce---EEEEeccC---------chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCC
Confidence 345688776655555432 22222222 33345567 99999999999999997 5689999988
Q ss_pred hhhhccccchhhhHHHHHHHHHhcC------CcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEE
Q 002159 743 ELINMYIGESEKNVRDIFQKARSAR------PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFI 816 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~~------P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~V 816 (958)
+-.+ -..+|++.+.+.... ..|+||||+|.+. ....+.|+..|+.. .+++.+
T Consensus 606 d~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt-------------~~AQnALLk~lEep---~~~~~F 663 (846)
T PRK04132 606 DERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------QDAQQALRRTMEMF---SSNVRF 663 (846)
T ss_pred Cccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC-------------HHHHHHHHHHhhCC---CCCeEE
Confidence 7422 235676666544322 3699999999995 23567788888753 357888
Q ss_pred EEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhh
Q 002159 817 IGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 876 (958)
Q Consensus 817 I~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~ 876 (958)
|++||.++.+.+++++ |+ ..+.|+. ++.+.-...++...++..+. ++..+..++..
T Consensus 664 ILi~N~~~kIi~tIrS--RC-~~i~F~~-ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~ 720 (846)
T PRK04132 664 ILSCNYSSKIIEPIQS--RC-AIFRFRP-LRDEDIAKRLRYIAENEGLELTEEGLQAILYI 720 (846)
T ss_pred EEEeCChhhCchHHhh--hc-eEEeCCC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8899999999999998 98 4678874 56666666666665543322 23456677766
No 301
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.5e-07 Score=105.71 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=82.3
Q ss_pred cEEEecCCCChhHHHHHHHHHHcC------------------------CceeeeccchhhhccccchhhhHHHHHHHHHh
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECS------------------------LNFLSVKGPELINMYIGESEKNVRDIFQKARS 765 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~------------------------~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~ 765 (958)
.+||+||||+|||++|.++|+++. .+++.++.++....- -....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 499999999999999999999886 467777766553321 123345555444332
Q ss_pred ----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceee
Q 002159 766 ----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 841 (958)
Q Consensus 766 ----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~ 841 (958)
....|++|||+|.+.. ...+.++..|+. ...+..+|.+||.|+.|-|.+.+ |+. .++
T Consensus 104 ~~~~~~~kviiidead~mt~-------------~A~nallk~lEe---p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE-------------DAANALLKTLEE---PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhcc---CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 3457999999999862 456778877774 35678888899999998888888 885 556
Q ss_pred cc
Q 002159 842 VG 843 (958)
Q Consensus 842 v~ 843 (958)
|+
T Consensus 165 f~ 166 (325)
T COG0470 165 FK 166 (325)
T ss_pred cC
Confidence 65
No 302
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=4.5e-07 Score=108.39 Aligned_cols=159 Identities=18% Similarity=0.306 Sum_probs=101.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
.+..+||+||+|+||||+|+++|+.++.. +++++.. .......++.+.+.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~ 110 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDN 110 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHH
Confidence 34458999999999999999999998642 2222221 12234456666666
Q ss_pred hhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
+.. ....|++|||+|.+.. +....+++.+.+. ...+++|
T Consensus 111 ~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~LEep----------------------p~~~~fI 153 (527)
T PRK14969 111 AQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTLEEP----------------------PEHVKFI 153 (527)
T ss_pred HhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHHhCC----------------------CCCEEEE
Confidence 542 1235999999987753 1233444443221 4678888
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
.+|+++..+.+.+++|. ..+.+..++..+-...+...+..... ..+ ...+..++..+.| ..++...++..
T Consensus 154 L~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi---~~~-~~al~~la~~s~G-slr~al~lldq 223 (527)
T PRK14969 154 LATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI---PFD-ATALQLLARAAAG-SMRDALSLLDQ 223 (527)
T ss_pred EEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 88888999998888875 67889999998888777766644332 112 3345666666554 33444444443
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1e-06 Score=105.65 Aligned_cols=146 Identities=19% Similarity=0.289 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------------------EE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------VV 426 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~--------------------------~~ 426 (958)
..+++.|...+.. -+.+..+||+||+|+||||+++++|+.+... ++
T Consensus 19 ~~i~~~L~~~i~~--------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 19 EHVTEPLSSALDA--------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 3455666665532 1233457999999999999999999988631 22
Q ss_pred EEecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCc
Q 002159 427 EYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (958)
Q Consensus 427 ~I~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~ 502 (958)
++++.+ ......++++.+.+.. ....|++|||+|.+.. .....+++.+.+
T Consensus 91 eidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALLK~LEE----- 144 (584)
T PRK14952 91 ELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALLKIVEE----- 144 (584)
T ss_pred Eecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHHHHHhc-----
Confidence 222211 1123444554444431 2346999999998754 123334433322
Q ss_pred cccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCc
Q 002159 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVS 570 (958)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~ 570 (958)
....+++|.+|+.+..+.+.+++| ...+.+..++..+-.+.++..+....
T Consensus 145 -----------------pp~~~~fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 145 -----------------PPEHLIFIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred -----------------CCCCeEEEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 156788888888999999999988 47889999989888888877775543
No 304
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=5e-07 Score=101.65 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCce----------------eeeccchhhhcccc-----chhhhHHHHHHHHH-
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNF----------------LSVKGPELINMYIG-----ESEKNVRDIFQKAR- 764 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~----------------i~v~~~~l~~~~~G-----ese~~vr~lf~~A~- 764 (958)
.+..+||+||+|+|||++|+++|..+...- ..-+-|++..-... -+-..+|++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 355799999999999999999998774310 00001111110000 12245677665554
Q ss_pred ---hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceee
Q 002159 765 ---SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 841 (958)
Q Consensus 765 ---~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~ 841 (958)
.....|++||++|.+. ....|.||+.|+.- ..++++|.+|+.|+.|.|.+++ |+.. +.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEEP---p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~ 161 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN-------------RNAANALLKSLEEP---SGDTVLLLISHQPSRLLPTIKS--RCQQ-QA 161 (328)
T ss_pred ccccCCCeEEEECChhhCC-------------HHHHHHHHHHHhCC---CCCeEEEEEECChhhCcHHHHh--hcee-ee
Confidence 3445799999999885 35678999998863 4678888899999999999999 9976 77
Q ss_pred ccCCCCHHHHHHHHHHH
Q 002159 842 VGVNSDVSYRERVLKAL 858 (958)
Q Consensus 842 v~~ppd~~~r~~Il~~~ 858 (958)
|+. |+.+.-..+|+..
T Consensus 162 ~~~-~~~~~~~~~L~~~ 177 (328)
T PRK05707 162 CPL-PSNEESLQWLQQA 177 (328)
T ss_pred CCC-cCHHHHHHHHHHh
Confidence 774 6666555566543
No 305
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.60 E-value=3.4e-08 Score=94.41 Aligned_cols=105 Identities=30% Similarity=0.468 Sum_probs=58.8
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeeccc-hhhh-cccc-----chhh----hHHHHHHHHHhcCCcEEEEccccc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP-ELIN-MYIG-----ESEK----NVRDIFQKARSARPCVIFFDELDS 778 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~-~l~~-~~~G-----ese~----~vr~lf~~A~~~~P~ILfiDEiD~ 778 (958)
++||.|+||+|||++|+++|..++..|..|... ++.- ...| .... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988763 3321 1122 1111 011122 25999999976
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCC-----CCChhhcCcCCc
Q 002159 779 LAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD-----LIDPALLRPGRF 836 (958)
Q Consensus 779 l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~-----~ldpaLlrpgRf 836 (958)
.. -++.+.||..|..-. .-.+..+||||-|..+ .|+.|++. ||
T Consensus 74 ap-------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 AP-------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CC-------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 54 456778887775321 1235689999999776 67778877 77
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=7.3e-07 Score=108.21 Aligned_cols=169 Identities=18% Similarity=0.322 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ecC----------ccc--ccc
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY---SCH----------NLM--ASS 437 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I---~~~----------~l~--s~~ 437 (958)
+.+++.|...+.- -+.+..+|++||+|+||||+|+++|..+...-... .|. ++. ...
T Consensus 24 e~~v~~L~~aI~~--------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 24 DHIVQTLKNIIKS--------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 3455666655531 12345589999999999999999999885421100 110 110 000
Q ss_pred hhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCch
Q 002159 438 ERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV 513 (958)
Q Consensus 438 ~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~ 513 (958)
.......++++.+.+.. ....|++|||+|.+.. .....+++.+.+.
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEEP--------------- 145 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEEP--------------- 145 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhcC---------------
Confidence 01224456676666552 2346999999998754 1233444333221
Q ss_pred hhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 514 KEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 514 ~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
...+++|.+|+.+..|++.+++|+ ..+.+..|+..+....++..+..... ..+ ...+..++..+.|
T Consensus 146 -------P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI---~id-~eAl~~LA~lS~G 211 (725)
T PRK07133 146 -------PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENI---SYE-KNALKLIAKLSSG 211 (725)
T ss_pred -------CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 567888888889999999999887 58999999999988888776654332 122 2235556665554
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.2e-06 Score=96.39 Aligned_cols=158 Identities=21% Similarity=0.357 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEecCcccccch-------
Q 002159 371 LQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-----VVEYSCHNLMASSE------- 438 (958)
Q Consensus 371 l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~-----~~~I~~~~l~s~~~------- 438 (958)
.-++..+++...+.|.+..+ .+.++++||+||||||++++.++.++.-. +++|||...-+.+.
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~-----~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 21 HREEEINQLASFLAPALRGE-----RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCC-----CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 33456678888887777643 33469999999999999999999998433 89999975433221
Q ss_pred --------hch-HHHHHHHHHHhh-cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccC
Q 002159 439 --------RKT-SAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (958)
Q Consensus 439 --------g~~-e~~l~~~f~~A~-~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~ 508 (958)
|.. ...+...++... .....|+++||+|.|.... + ..+..+++ ...
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~--------~----~~LY~L~r-~~~----------- 151 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD--------G----EVLYSLLR-APG----------- 151 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc--------c----hHHHHHHh-hcc-----------
Confidence 111 112222222222 2356788999999998621 1 12222221 111
Q ss_pred CCCchhhhhhhhcCcEEEEEecCCC---CCCChhhhccc-cEEEEcCCCCHHHHHHHHHHhcc
Q 002159 509 GYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCF-SHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIaaTn~~---~~Ld~alrrrf-~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
....+|.+|+.+|.. +.+++.+.+++ ..+|.+++++..|-..|++.-..
T Consensus 152 ----------~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 152 ----------ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred ----------ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 015678999999876 46788888864 45699999999999999998764
No 308
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.58 E-value=1.6e-06 Score=90.02 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHH
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+.+..+||+||+|+|||++++.++..+... +..+... + .......++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~--~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---G--QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---c--CcCCHHHHHHHHH
Confidence 344569999999999999999999997431 1222111 0 0112345555555
Q ss_pred Hhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEE
Q 002159 451 TAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (958)
Q Consensus 451 ~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (958)
.+.. ....++++||+|.+... ....++..+ +. .....++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~l-e~---------------------~~~~~~~ 129 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTL-EE---------------------PPPNTLF 129 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHh-cC---------------------CCCCeEE
Confidence 5543 24569999999987541 122233222 21 1345667
Q ss_pred EEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 527 IaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
|.+|+.+..+.+++++|. ..+.+..|+..+...+++.. . .+ .+.++.++..+.|
T Consensus 130 il~~~~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~----g-----i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 130 ILITPSPEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ----G-----IS-EEAAELLLALAGG 183 (188)
T ss_pred EEEECChHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc----C-----CC-HHHHHHHHHHcCC
Confidence 777778889999999887 58999999999988888765 1 11 2335666666555
No 309
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.1e-06 Score=100.06 Aligned_cols=171 Identities=15% Similarity=0.225 Sum_probs=107.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
....++||||.|.|||+|++|++++. ++.++.+...++.+.++-..-.+--+-|++-. .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35669999999999999999999877 34577777777766665543333333455544 446999999999986
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCccce--eeccCCCCHHHHHHHHH
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDKL--LYVGVNSDVSYRERVLK 856 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd~~--I~v~~ppd~~~r~~Il~ 856 (958)
+... ....-.+.|.+. . .++-+|+.+-..|.. ++|-|.+ ||..- +.+. |||.+.|..||+
T Consensus 190 k~~~----qeefFh~FN~l~-------~-~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~-~Pd~e~r~aiL~ 254 (408)
T COG0593 190 KERT----QEEFFHTFNALL-------E-NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIE-PPDDETRLAILR 254 (408)
T ss_pred ChhH----HHHHHHHHHHHH-------h-cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeC-CCCHHHHHHHHH
Confidence 5321 111112233332 2 233455544445554 5588888 99764 4455 589999999998
Q ss_pred HHHhhc--cCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002159 857 ALTRKF--KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 857 ~~~~~~--~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A 897 (958)
...... .+.++ -+..+|.+. .=+.+++..+.......|
T Consensus 255 kka~~~~~~i~~e-v~~~la~~~--~~nvReLegaL~~l~~~a 294 (408)
T COG0593 255 KKAEDRGIEIPDE-VLEFLAKRL--DRNVRELEGALNRLDAFA 294 (408)
T ss_pred HHHHhcCCCCCHH-HHHHHHHHh--hccHHHHHHHHHHHHHHH
Confidence 865544 44333 356778774 235566666665544444
No 310
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=9.4e-07 Score=105.81 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=93.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
..+||+||+|+||||+++++|+.+... ++++++.. ......++.+.+...
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~ 112 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIG 112 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHH
Confidence 468999999999999999999998642 33343321 111223333322222
Q ss_pred ----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEe
Q 002159 454 ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (958)
Q Consensus 454 ----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaa 529 (958)
.....|++|||+|.+.. .....+++.+.+ ....+++|.+
T Consensus 113 ~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk~LEE----------------------P~~~~ifILa 155 (624)
T PRK14959 113 YAPMEGRYKVFIIDEAHMLTR---------------EAFNALLKTLEE----------------------PPARVTFVLA 155 (624)
T ss_pred hhhhcCCceEEEEEChHhCCH---------------HHHHHHHHHhhc----------------------cCCCEEEEEe
Confidence 22347999999998754 112333333211 1456888888
Q ss_pred cCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 530 Tn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
|+.+..+.+.+++|+ ..+.+..++..+-..+++..+..... ..+ ...++.++..+.|
T Consensus 156 Tt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi---~id-~eal~lIA~~s~G 212 (624)
T PRK14959 156 TTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGV---DYD-PAAVRLIARRAAG 212 (624)
T ss_pred cCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 989889998888876 57889999999988888776644322 122 3345666665554
No 311
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.57 E-value=7.8e-07 Score=107.74 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=92.7
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccchhhhccccch--hhhHH---HHHHH--HHhcCCcEEEEcccccc
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGES--EKNVR---DIFQK--ARSARPCVIFFDELDSL 779 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~~l~~~~~Ges--e~~vr---~lf~~--A~~~~P~ILfiDEiD~l 779 (958)
.+|||.|+||||||++|++++..+.. +|+.+.........+|.- +..++ ..|+. ...+...+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 588776432333334431 00000 00000 00122359999999888
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC---CCChhhcCcCCccceeeccCCC
Q 002159 780 APARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVGVNS 846 (958)
Q Consensus 780 ~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd~~I~v~~pp 846 (958)
. ..+.+.|+..|+.-. ....++.||+|+|..+ .+.++|+. ||+..+.+..++
T Consensus 97 ~-------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 97 D-------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred C-------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 5 356777777775211 0123678898888765 68899999 999988888777
Q ss_pred CHHHHHHHHHHHHh
Q 002159 847 DVSYRERVLKALTR 860 (958)
Q Consensus 847 d~~~r~~Il~~~~~ 860 (958)
+.++|.+|++....
T Consensus 162 ~~~er~eil~~~~~ 175 (589)
T TIGR02031 162 SQDLRVEIVRRERC 175 (589)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888999887653
No 312
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.6e-06 Score=107.94 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=93.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc--------------------------EEEEecCcccccchhchHHHHHHHHH
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~--------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+..+||+||+||||||+++++|+.+.+. +++++..+ ......++.+.+
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~ 110 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRE 110 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHH
Confidence 4458999999999999999999999642 22222211 112333444333
Q ss_pred Hhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEE
Q 002159 451 TAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (958)
Q Consensus 451 ~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (958)
.+. .....|++|||+|.|.. .....+|+-+ +.. ...++|
T Consensus 111 ~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLLK~L-EEp---------------------P~~~~f 153 (824)
T PRK07764 111 RAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALLKIV-EEP---------------------PEHLKF 153 (824)
T ss_pred HHHhchhcCCceEEEEechhhcCH---------------HHHHHHHHHH-hCC---------------------CCCeEE
Confidence 322 23456999999998864 1223333332 211 567888
Q ss_pred EEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 527 IaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
|.+|+.++.|.+.+++|. +.+.+..++.++...+++..+.+... .++ ...+..++..+.|
T Consensus 154 Il~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv---~id-~eal~lLa~~sgG 213 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGV---PVE-PGVLPLVIRAGGG 213 (824)
T ss_pred EEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 888888888998999885 77888888888888888877754332 111 2234555555544
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=3.2e-08 Score=104.45 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred HhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--CcccccchhchHHHHHHHHHHhhcCCCeEE
Q 002159 383 LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC--HNLMASSERKTSAALAQAFNTAQSYSPTIL 460 (958)
Q Consensus 383 i~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~--~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL 460 (958)
++..+.+++| |.|.||+|||||||+|.+|+-..+..++|.. ..+.+ ++ ..+..+||+.. .-|=--
T Consensus 22 i~L~v~~GEf-------vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~--p~---~~~~~vFQ~~~-LlPW~T 88 (248)
T COG1116 22 INLSVEKGEF-------VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG--PG---PDIGYVFQEDA-LLPWLT 88 (248)
T ss_pred ceeEECCCCE-------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC--CC---CCEEEEeccCc-ccchhh
Confidence 4455556666 9999999999999999999999888776544 32211 11 11122233221 111111
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhh
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI 540 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~al 540 (958)
++|++..-.... + ....+....+.+.|+.+ +|. ..
T Consensus 89 v~~NV~l~l~~~---~--~~~~e~~~~a~~~L~~V---------------------------------------gL~-~~ 123 (248)
T COG1116 89 VLDNVALGLELR---G--KSKAEARERAKELLELV---------------------------------------GLA-GF 123 (248)
T ss_pred HHhhheehhhcc---c--cchHhHHHHHHHHHHHc---------------------------------------CCc-ch
Confidence 233332111100 0 00000111233333222 111 23
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALV 601 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv 601 (958)
..++.+++|+| ++||++|++.+..++..+..|+.. .+++.++.+++.- |+.||+..-+
T Consensus 124 ~~~~P~qLSGG---MrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 124 EDKYPHQLSGG---MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred hhcCccccChH---HHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 45788999999 999999999999999888666543 2344444444333 8888886544
No 314
>PRK09087 hypothetical protein; Validated
Probab=98.55 E-value=8.1e-07 Score=94.94 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
..++|+||+|+|||+|+++++...+.. .++..++.. ..+.... ...+++|+++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAA---EGPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhh---cCeEEEECCCCCCC-------
Confidence 348999999999999999999886554 333221111 1111111 14788999986532
Q ss_pred CCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCC---Chhhhcccc--EEEEcCC
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL---PPTIRRCFS--HEISMGP 552 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L---d~alrrrf~--~eIsig~ 552 (958)
...++-.+++.+.+ .+..+|++++..+..+ .+++++|+. ..+++..
T Consensus 102 ------~~~~lf~l~n~~~~-----------------------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 102 ------DETGLFHLINSVRQ-----------------------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred ------CHHHHHHHHHHHHh-----------------------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 12345555554432 3455677776555433 578999874 6789999
Q ss_pred CCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC
Q 002159 553 LTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (958)
Q Consensus 553 Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~ 590 (958)
|+.+.|.++++..++.... .. .++.++.++++..
T Consensus 153 pd~e~~~~iL~~~~~~~~~---~l-~~ev~~~La~~~~ 186 (226)
T PRK09087 153 PDDALLSQVIFKLFADRQL---YV-DPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHhh
Confidence 9999999999999876432 12 2445666777665
No 315
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.54 E-value=1.6e-06 Score=97.20 Aligned_cols=152 Identities=17% Similarity=0.233 Sum_probs=93.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCcccccchhchHHHHHHHHHH-hhc-----CCCeEEeecchhh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFNT-AQS-----YSPTILLLRDFDV 467 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg-----~~~~~I~~~~l~s~~~g~~e~~l~~~f~~-A~~-----~~P~IL~iDeid~ 467 (958)
+++|+||||+||||+++++++++. ..++++++.+-. ....++..+.. +.. ..+.++++||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 489999999999999999999973 234555544311 11112222221 111 2356899999987
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEE
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~e 547 (958)
+... ....+.++.+.. .....+|.++|....+.+.+++|+. .
T Consensus 114 l~~~----------------~~~~L~~~le~~---------------------~~~~~lIl~~~~~~~l~~~l~sr~~-~ 155 (319)
T PRK00440 114 LTSD----------------AQQALRRTMEMY---------------------SQNTRFILSCNYSSKIIDPIQSRCA-V 155 (319)
T ss_pred CCHH----------------HHHHHHHHHhcC---------------------CCCCeEEEEeCCccccchhHHHHhh-e
Confidence 7431 112233332211 2334566677777778778888864 5
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
+.+..|+..+...+++..++.... ..+ ...++.++..+. +|+..+..
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~-~~al~~l~~~~~----gd~r~~~~ 202 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EIT-DDALEAIYYVSE----GDMRKAIN 202 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcC----CCHHHHHH
Confidence 899999999999999888765433 222 345677777654 45555443
No 316
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=2.7e-06 Score=103.60 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=88.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccc-------hhch----HHHHHHHHHH-----
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASS-------ERKT----SAALAQAFNT----- 451 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~-------~g~~----e~~l~~~f~~----- 451 (958)
..++|+|||||||||+++++++.. +.+++.++|..+-... .+.. ....+..+..
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 459999999999999999998766 3468999987642100 0000 0000111110
Q ss_pred -----hhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccc---ccCCCCchh-hhhhhhcC
Q 002159 452 -----AQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE---ESHGYFPVK-EIEKICRQ 522 (958)
Q Consensus 452 -----A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~---~~~g~~~~~-~~~~~~~~ 522 (958)
.......+|||||++.+-.. ....+...+++-.-.+. ..+. +..-|.+.. -.......
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~------------~Q~~Ll~~Le~~~v~~~-~~~~~~~~~~~~~~ik~~~~~~~~~ 322 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPL------------LQNKLLKVLEDKRVEFS-SSYYDPDDPNVPKYIKKLFEEGAPA 322 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHH------------HHHHHHHHHhhCeEEee-cceeccCCcccchhhhhhcccCccc
Confidence 01224579999999877541 12233333322100000 0000 000010000 00111234
Q ss_pred cEEEEEec-CCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCC
Q 002159 523 QVLLVAAA-DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPV 569 (958)
Q Consensus 523 ~ViVIaaT-n~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~ 569 (958)
.+++|++| +.+..+++++++|+. .+.+++++..+...|++..+...
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 56777655 567889999999874 67889999999999999987653
No 317
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=6.6e-07 Score=108.16 Aligned_cols=161 Identities=16% Similarity=0.289 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEe
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYS 429 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~ 429 (958)
.+++.|...+.- -+.+..+||+||+|+||||+++++|+.+... +++++
T Consensus 23 ~v~~~L~~~i~~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 23 HVSRTLQNAIDT--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 455666555431 1334568999999999999999999998532 33333
Q ss_pred cCcccccchhchHHHHHHHHHHhhcCCC-----eEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 430 CHNLMASSERKTSAALAQAFNTAQSYSP-----TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 430 ~~~l~s~~~g~~e~~l~~~f~~A~~~~P-----~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
+.+ ......++.+.+.+. ..| .|++|||+|.+.. .....+++.+.+.
T Consensus 95 ~~s------~~~v~~ir~l~~~~~-~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~LEep------ 146 (576)
T PRK14965 95 GAS------NTGVDDIRELRENVK-YLPSRSRYKIFIIDEVHMLST---------------NAFNALLKTLEEP------ 146 (576)
T ss_pred ccC------ccCHHHHHHHHHHHH-hccccCCceEEEEEChhhCCH---------------HHHHHHHHHHHcC------
Confidence 321 123344566655554 233 5899999997754 1233344333221
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
...+++|.+|+.+..|++.+++|. ..+.+..++..+-...+...+++... ..+ ...+..
T Consensus 147 ----------------p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi---~i~-~~al~~ 205 (576)
T PRK14965 147 ----------------PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGI---SIS-DAALAL 205 (576)
T ss_pred ----------------CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCC---CCC-HHHHHH
Confidence 567888888889999999999875 57888888888877777766654332 122 334566
Q ss_pred HhhhcCC
Q 002159 585 IIGQTSG 591 (958)
Q Consensus 585 la~~t~G 591 (958)
++..+.|
T Consensus 206 la~~a~G 212 (576)
T PRK14965 206 VARKGDG 212 (576)
T ss_pred HHHHcCC
Confidence 6666665
No 318
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-06 Score=106.46 Aligned_cols=168 Identities=16% Similarity=0.269 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----Ee---cC-----------ccc-
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE----YS---CH-----------NLM- 434 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~----I~---~~-----------~l~- 434 (958)
++++.|...+.-- +.+..+||+||+|+||||+|+++|+.++..... -. |. ++.
T Consensus 23 ~i~~~L~~~l~~~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 23 AIATTLKNALISN--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred HHHHHHHHHHHcC--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 4555665555321 233468999999999999999999998652110 00 10 110
Q ss_pred -ccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCC
Q 002159 435 -ASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHG 509 (958)
Q Consensus 435 -s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g 509 (958)
..........++++.+.+.. ....|++|||+|.+.. .....+++.+.+
T Consensus 95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLLK~LEe------------ 147 (620)
T PRK14948 95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALLKTLEE------------ 147 (620)
T ss_pred EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHHHHHhc------------
Confidence 11112345567777766642 2236999999997743 122333433322
Q ss_pred CCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc
Q 002159 510 YFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT 589 (958)
Q Consensus 510 ~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t 589 (958)
....+++|.+|+++..+.+.+++|. ..+.+..++..+-...+.+.+.+... ..+ ...+..++..+
T Consensus 148 ----------Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi---~is-~~al~~La~~s 212 (620)
T PRK14948 148 ----------PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESI---EIE-PEALTLVAQRS 212 (620)
T ss_pred ----------CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCC---CCC-HHHHHHHHHHc
Confidence 1456888888888888988999875 66888888888777777666654322 222 23466667666
Q ss_pred CC
Q 002159 590 SG 591 (958)
Q Consensus 590 ~G 591 (958)
.|
T Consensus 213 ~G 214 (620)
T PRK14948 213 QG 214 (620)
T ss_pred CC
Confidence 65
No 319
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2e-06 Score=103.27 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I 428 (958)
+.+++.|...+.- -+.+..+||+||+|+||||+++++|+.+... ++++
T Consensus 22 e~iv~~L~~~i~~--------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i 93 (563)
T PRK06647 22 DFVVETLKHSIES--------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI 93 (563)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence 3455566555531 1234568999999999999999999998642 2222
Q ss_pred ecCcccccchhchHHHHHHHHHHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 429 SCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 429 ~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
++.. ......++++.+.+. .....+++|||+|.+.. .....+++.+.+
T Consensus 94 dgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~LEe------- 145 (563)
T PRK06647 94 DGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKTIEE------- 145 (563)
T ss_pred cCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHhhcc-------
Confidence 2110 122344555554433 22446999999987753 123333333211
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
....+++|.+|+.+..+.+.+++|+ ..+.+..++.++....++..++.... ..+ ...+..
T Consensus 146 ---------------pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi---~id-~eAl~l 205 (563)
T PRK06647 146 ---------------PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQI---KYE-DEALKW 205 (563)
T ss_pred ---------------CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 1567888888888899999999886 46889999999988888877654432 111 334566
Q ss_pred HhhhcCCCChhhHHHHHH
Q 002159 585 IIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 585 la~~t~Gfv~~DL~~Lv~ 602 (958)
++..+.| ..+++..++.
T Consensus 206 La~~s~G-dlR~alslLd 222 (563)
T PRK06647 206 IAYKSTG-SVRDAYTLFD 222 (563)
T ss_pred HHHHcCC-CHHHHHHHHH
Confidence 6666555 3444444443
No 320
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.52 E-value=9.7e-07 Score=103.34 Aligned_cols=182 Identities=18% Similarity=0.268 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EE-EecCccccc--------
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV-------VE-YSCHNLMAS-------- 436 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~-------~~-I~~~~l~s~-------- 436 (958)
+.+++.|...+..-.- ..+.|+.||.|+||||++|.+|.-++..- .+ ..|.++...
T Consensus 22 e~v~~~L~nal~~~ri--------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 22 EHVVKTLSNALENGRI--------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHHHHHHHHHHHhCcc--------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 3566777766643322 23469999999999999999999986531 11 112222211
Q ss_pred --chhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCC
Q 002159 437 --SERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGY 510 (958)
Q Consensus 437 --~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~ 510 (958)
........+|.+.+.+.. ....|++|||+|.|.. +.+.++|+.+.+.
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLKTLEEP------------ 146 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLKTLEEP------------ 146 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhcccccC------------
Confidence 113345677787777762 2335999999998865 3456666666543
Q ss_pred CchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC
Q 002159 511 FPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (958)
Q Consensus 511 ~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~ 590 (958)
...|++|.+|..+..+|+.+++|. +.+.+...+..+-...+...+.+...-+ + +..|.-+++...
T Consensus 147 ----------P~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~---e-~~aL~~ia~~a~ 211 (515)
T COG2812 147 ----------PSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINI---E-EDALSLIARAAE 211 (515)
T ss_pred ----------ccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCcc---C-HHHHHHHHHHcC
Confidence 678999999999999999999974 5677777778888877777776554422 1 344666666666
Q ss_pred CCChhhHHHHHHHHH
Q 002159 591 GFMPRDLHALVADAG 605 (958)
Q Consensus 591 Gfv~~DL~~Lv~eA~ 605 (958)
| +.+|...|...+.
T Consensus 212 G-s~RDalslLDq~i 225 (515)
T COG2812 212 G-SLRDALSLLDQAI 225 (515)
T ss_pred C-ChhhHHHHHHHHH
Confidence 6 3467666666553
No 321
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.2e-06 Score=101.36 Aligned_cols=153 Identities=14% Similarity=0.262 Sum_probs=92.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc-------EEE-EecCcccc----------cchhchHHHHHHHHHHhhc----
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVE-YSCHNLMA----------SSERKTSAALAQAFNTAQS---- 454 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~-------~~~-I~~~~l~s----------~~~g~~e~~l~~~f~~A~~---- 454 (958)
+..+||+||+|+||||+++++|..++.. ... .+|..+.+ .........++.+.+.+..
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~ 117 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK 117 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc
Confidence 3457999999999999999999998631 000 11111000 0011223334554444432
Q ss_pred CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC
Q 002159 455 YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (958)
Q Consensus 455 ~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~ 534 (958)
....|++|||+|.+.. ..+..+++.+.+. ...+++|.+|+.++
T Consensus 118 ~~~KVvIIDEad~Lt~---------------~a~naLLk~LEep----------------------p~~~v~Il~tt~~~ 160 (486)
T PRK14953 118 GKYKVYIIDEAHMLTK---------------EAFNALLKTLEEP----------------------PPRTIFILCTTEYD 160 (486)
T ss_pred CCeeEEEEEChhhcCH---------------HHHHHHHHHHhcC----------------------CCCeEEEEEECCHH
Confidence 2346999999997753 1223333333211 34566666777788
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.+++.+++|+ ..+.+..|+..+....++..++.... +.+ ...+..++..+.|
T Consensus 161 kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi---~id-~~al~~La~~s~G 212 (486)
T PRK14953 161 KIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKI---EYE-EKALDLLAQASEG 212 (486)
T ss_pred HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 8988888876 47899999999999988888765443 222 2335556655544
No 322
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.51 E-value=6e-07 Score=101.31 Aligned_cols=172 Identities=17% Similarity=0.217 Sum_probs=100.2
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchh-------hhHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese-------~~vr~lf~~A~~~~P~IL 771 (958)
....|+|+|++||||+++|++|.... +.+|+.+++..+... .+|... ......|..| ...+|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 45679999999999999999997655 468999998755321 222110 0111234443 34699
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCC-------CCChhhcCcCCc
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD-------LIDPALLRPGRF 836 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~-------~ldpaLlrpgRf 836 (958)
|||||+.+. ..+...|+..|+.-. ....++-+|+|||..- .+.+.|+. ||
T Consensus 98 ~Ldei~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 98 FLDELATAS-------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred EeCChHhCC-------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 999999886 234556666554211 1124678999998641 33455555 56
Q ss_pred cceeeccCCCCHHHHHHHH---HHHHhhc----cCC--CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 837 DKLLYVGVNSDVSYRERVL---KALTRKF----KLL--EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 837 d~~I~v~~ppd~~~r~~Il---~~~~~~~----~~~--~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
.. +.+.+||=.+++.+|. +.++..+ ... ..++-+.+.....+.|-| ++|++++.+|+..+
T Consensus 163 ~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AF-DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cc-hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 32 3344456555555553 3333321 111 233333333332356666 68888888877654
No 323
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.51 E-value=5.4e-07 Score=107.61 Aligned_cols=135 Identities=22% Similarity=0.246 Sum_probs=85.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCc-eeeeccch---hhh-----ccccchhhhHHHHHHHHHhcCCcEEEEccccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLN-FLSVKGPE---LIN-----MYIGESEKNVRDIFQKARSARPCVIFFDELDS 778 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~-~i~v~~~~---l~~-----~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~ 778 (958)
..+|||+|+||||||++|++++...... |....++. +.. ...|+..-. ...+.. +...+++|||+|.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLE-GGALVL---ADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEec-CccEEe---cCCCEEEEechhh
Confidence 4579999999999999999999987543 33211111 111 111110000 001111 2346999999998
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC-------------CCChhhcCcCC
Q 002159 779 LAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-------------LIDPALLRPGR 835 (958)
Q Consensus 779 l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-------------~ldpaLlrpgR 835 (958)
+. ....+.|+..|+.-. ....++.||+|+|..+ .|+++++. |
T Consensus 312 l~-------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--R 376 (509)
T smart00350 312 MD-------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--R 376 (509)
T ss_pred CC-------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--c
Confidence 85 234455565554311 0124678999999653 58999999 9
Q ss_pred ccceeeccCCCCHHHHHHHHHHHHhh
Q 002159 836 FDKLLYVGVNSDVSYRERVLKALTRK 861 (958)
Q Consensus 836 fd~~I~v~~ppd~~~r~~Il~~~~~~ 861 (958)
||-...+.-+|+.+....|.+..++.
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHHHh
Confidence 99877775568899888998877653
No 324
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.49 E-value=2.1e-06 Score=101.22 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=76.7
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCC----------ceeeeccc-----hhh-------------hccccchhhhH
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSL----------NFLSVKGP-----ELI-------------NMYIGESEKNV 756 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~----------~~i~v~~~-----~l~-------------~~~~Gese~~v 756 (958)
...+..++|+||||+|||+|++.+++.+.. .+.++.+. .+. ...+|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 445788999999999999999999986631 11111111 000 00122221111
Q ss_pred HHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC--
Q 002159 757 RDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-- 824 (958)
Q Consensus 757 r~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-- 824 (958)
...+..|.. .+||+||++.+. ..++..|+.-|+.-. ....++.+|+|+|...
T Consensus 287 pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG 350 (506)
T PRK09862 287 PGEISLAHN---GVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG 350 (506)
T ss_pred hhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccce
Confidence 233444444 499999997653 356667776664211 0134689999999752
Q ss_pred -------------------CCChhhcCcCCccceeeccCC
Q 002159 825 -------------------LIDPALLRPGRFDKLLYVGVN 845 (958)
Q Consensus 825 -------------------~ldpaLlrpgRfd~~I~v~~p 845 (958)
.|..+++. |||-.+.++.|
T Consensus 351 ~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~ 388 (506)
T PRK09862 351 HYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLP 388 (506)
T ss_pred ecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCC
Confidence 36678888 99999999964
No 325
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.49 E-value=6.9e-07 Score=100.22 Aligned_cols=66 Identities=24% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcCCCC--------CCCcEEEEEecCCCC-------CCChhhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 794 DRVVSQMLAEIDGLND--------SSQDLFIIGASNRPD-------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 794 ~rv~~~LL~~ldg~~~--------~~~~v~VI~aTNrp~-------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
..+++.||+.++.-.- -.-+.+||++||..+ ...+|+++ ||. .|++|.|-+...-.+|.+..
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~ 326 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKL 326 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHH
Confidence 4678888888763211 112368899999873 56789999 998 88999888888888888887
Q ss_pred Hhhc
Q 002159 859 TRKF 862 (958)
Q Consensus 859 ~~~~ 862 (958)
+...
T Consensus 327 ~~~s 330 (361)
T smart00763 327 LRNS 330 (361)
T ss_pred hccC
Confidence 7653
No 326
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.49 E-value=9.9e-06 Score=88.67 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=98.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCc-EEE---EecC----c----cccc----chhch-H---HHHHHHH-HHhhcCCC
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIH-VVE---YSCH----N----LMAS----SERKT-S---AALAQAF-NTAQSYSP 457 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~-~~~---I~~~----~----l~s~----~~g~~-e---~~l~~~f-~~A~~~~P 457 (958)
.++|+||+|+||||+++.+++++... +.. +++. + +... ..+.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 38999999999999999999998632 211 1111 0 0000 00111 1 1222212 22234567
Q ss_pred eEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC--cEEEEEecCCCCC
Q 002159 458 TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ--QVLLVAAADSSEG 535 (958)
Q Consensus 458 ~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~--~ViVIaaTn~~~~ 535 (958)
.++++||++.+.. .....++.+.... . .... .++++|...-...
T Consensus 125 ~vliiDe~~~l~~----------------~~~~~l~~l~~~~----------------~--~~~~~~~vvl~g~~~~~~~ 170 (269)
T TIGR03015 125 ALLVVDEAQNLTP----------------ELLEELRMLSNFQ----------------T--DNAKLLQIFLVGQPEFRET 170 (269)
T ss_pred eEEEEECcccCCH----------------HHHHHHHHHhCcc----------------c--CCCCeEEEEEcCCHHHHHH
Confidence 8999999987643 1112222322100 0 0022 2233333221111
Q ss_pred C----ChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002159 536 L----PPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIR 610 (958)
Q Consensus 536 L----d~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~ 610 (958)
+ ...+++|+...+.++..++++-.+++...+.....-....-..+.++.+.+.+.|.. ..+..++..+...+..
T Consensus 171 l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 171 LQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFL 248 (269)
T ss_pred HcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHH
Confidence 1 124666778889999999999999998887543321111123567888899999875 5588888887766654
No 327
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=4.1e-06 Score=101.13 Aligned_cols=169 Identities=15% Similarity=0.284 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------------cC--------
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS-------------CH-------- 431 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~-------------~~-------- 431 (958)
+..++.|...+.- -+.+..+||+||+|+||||+++++|+.+.......+ |.
T Consensus 30 ~~~v~~L~~~~~~--------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 30 EAMVRTLTNAFET--------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHHHHHHHHHHHc--------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 3556666655531 134456899999999999999999999864321111 11
Q ss_pred ccccc--chhchHHHHHHHHHHhhcC----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccc
Q 002159 432 NLMAS--SERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE 505 (958)
Q Consensus 432 ~l~s~--~~g~~e~~l~~~f~~A~~~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~ 505 (958)
+++.- ........++++.+.+... ...|++|||+|.+.. ..+..+++.+.+.
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~naLLKtLEeP------- 159 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFNALLKTLEEP------- 159 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHHHHHHHHHhC-------
Confidence 11100 0112245567776665422 346999999988753 1233333333211
Q ss_pred ccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHH
Q 002159 506 ESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDI 585 (958)
Q Consensus 506 ~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~l 585 (958)
...+++|.+|+....+.+.+++|. ..+.+..|++.+....++..+++... ..+ .+.++.+
T Consensus 160 ---------------p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi---~i~-~eAl~lI 219 (598)
T PRK09111 160 ---------------PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGV---EVE-DEALALI 219 (598)
T ss_pred ---------------CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHH
Confidence 456777778888888988999876 67999999999988888877654432 122 2345566
Q ss_pred hhhcCC
Q 002159 586 IGQTSG 591 (958)
Q Consensus 586 a~~t~G 591 (958)
+..+.|
T Consensus 220 a~~a~G 225 (598)
T PRK09111 220 ARAAEG 225 (598)
T ss_pred HHHcCC
Confidence 666555
No 328
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=1.2e-06 Score=102.84 Aligned_cols=157 Identities=15% Similarity=0.229 Sum_probs=98.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchH---HHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTS---AALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e---~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
.+++|||++|+|||+|++++++++ +..++++++.++......... ..+....+.. ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 459999999999999999999965 457788888776654332211 1122221222 245689999999876
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChhhhcccc-
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS- 545 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf~- 545 (958)
.+ .....++-.+++.+.+ .+..+|+.+...|. .+++.+++||.
T Consensus 220 ~k----------~~~~e~lf~l~N~~~~-----------------------~~k~iIltsd~~P~~l~~l~~rL~SR~~~ 266 (450)
T PRK14087 220 YK----------EKTNEIFFTIFNNFIE-----------------------NDKQLFFSSDKSPELLNGFDNRLITRFNM 266 (450)
T ss_pred CC----------HHHHHHHHHHHHHHHH-----------------------cCCcEEEECCCCHHHHhhccHHHHHHHhC
Confidence 41 1123445555555432 23334444333443 45788888885
Q ss_pred -EEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 546 -HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 546 -~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
-.+.+..|+.++|.+|++..++.... ...+ .++.++.++..+.|
T Consensus 267 Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l-~~evl~~Ia~~~~g 311 (450)
T PRK14087 267 GLSIAIQKLDNKTATAIIKKEIKNQNI-KQEV-TEEAINFISNYYSD 311 (450)
T ss_pred CceeccCCcCHHHHHHHHHHHHHhcCC-CCCC-CHHHHHHHHHccCC
Confidence 45778899999999999998865432 1112 24456667776665
No 329
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.49 E-value=6.8e-08 Score=108.15 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=80.6
Q ss_pred HhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE--ecCcccccchhchHHHHHHHHHHhhcCCCeEE
Q 002159 383 LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY--SCHNLMASSERKTSAALAQAFNTAQSYSPTIL 460 (958)
Q Consensus 383 i~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I--~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL 460 (958)
++..+.+++| +-|.||+||||||++|+||+-..+.-++| ++.++..- .-....+..+||.-. .-|-.-
T Consensus 24 isl~i~~Gef-------~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l--pp~kR~ig~VFQ~YA-LFPHlt 93 (352)
T COG3842 24 ISLDIKKGEF-------VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV--PPEKRPIGMVFQSYA-LFPHMT 93 (352)
T ss_pred ceeeecCCcE-------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhhcccceeecCcc-cCCCCc
Confidence 4555566666 99999999999999999999887766544 44443331 111223444555332 123333
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhh
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI 540 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~al 540 (958)
+.+++. +.-+.... ........++.++++.+ .+. .+
T Consensus 94 V~~NVa-fGLk~~~~---~~~~~i~~rv~e~L~lV---------------------------------------~L~-~~ 129 (352)
T COG3842 94 VEENVA-FGLKVRKK---LKKAEIKARVEEALELV---------------------------------------GLE-GF 129 (352)
T ss_pred HHHHhh-hhhhhcCC---CCHHHHHHHHHHHHHHc---------------------------------------Cch-hh
Confidence 444432 11110000 00001122333333221 122 24
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS 578 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~ 578 (958)
..|..+++|+| ++||++|++++..++..+.+|+..
T Consensus 130 ~~R~p~qLSGG---QqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 130 ADRKPHQLSGG---QQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred hhhChhhhChH---HHHHHHHHHHhhcCcchhhhcCcc
Confidence 56778999999 999999999999999888777654
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=6.2e-07 Score=101.04 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=90.7
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceee-----------------eccchhhhcc--------------------
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS-----------------VKGPELINMY-------------------- 748 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~-----------------v~~~~l~~~~-------------------- 748 (958)
+.+..+||+||+|+||+++|+++|..+....-. -+-+++.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456789999999999999999999876432100 0001111000
Q ss_pred --cc---------chhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCc
Q 002159 749 --IG---------ESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQD 813 (958)
Q Consensus 749 --~G---------ese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~ 813 (958)
-| -+-..+|++.+.+. .....|++||++|.+. ....|.||+.|+. ...+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------VAAANALLKTLEE---PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------HHHHHHHHHHhcC---CCcC
Confidence 00 01134566655543 2344699999999885 3567899999985 3567
Q ss_pred EEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHH
Q 002159 814 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 814 v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~ 857 (958)
+++|.+|++|+.|.|.+++ |+ +.+.|+. |+.++...+|..
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~-~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTV-PAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecC-CCHHHHHHHHHH
Confidence 8888899999999999999 99 5788885 666777777654
No 331
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=3.4e-06 Score=99.93 Aligned_cols=174 Identities=18% Similarity=0.293 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEE
Q 002159 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEY 428 (958)
Q Consensus 373 ~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~~~I 428 (958)
+.+++.|...+. .+ +.+..+||+||+|+||||+++++|+.+.. .++++
T Consensus 20 e~v~~~L~~~I~----~g----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 20 ESVSKTLSLALD----NN----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHHHHHHHHHHH----cC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 345556655553 11 33455799999999999999999998732 12222
Q ss_pred ecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccc
Q 002159 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (958)
Q Consensus 429 ~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~ 504 (958)
+..+ ......++...+.... ....|++|||+|.+.. .....+++.+.+.
T Consensus 92 daas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~LEEp------ 144 (535)
T PRK08451 92 DAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKTLEEP------ 144 (535)
T ss_pred cccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHHHhhc------
Confidence 2211 1123455555554321 1235899999987754 1223333333211
Q ss_pred cccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHH
Q 002159 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (958)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~ 584 (958)
...+.+|.+|+.+..+++.+++| ...+.+..++..+-...++..+..... ..+ ...+..
T Consensus 145 ----------------p~~t~FIL~ttd~~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~-~~Al~~ 203 (535)
T PRK08451 145 ----------------PSYVKFILATTDPLKLPATILSR-TQHFRFKQIPQNSIISHLKTILEKEGV---SYE-PEALEI 203 (535)
T ss_pred ----------------CCceEEEEEECChhhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 45577777788889999999998 478999999998888888777655432 111 344566
Q ss_pred HhhhcCCCChhhHHHHHHH
Q 002159 585 IIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 585 la~~t~Gfv~~DL~~Lv~e 603 (958)
++..+.| ..++...++..
T Consensus 204 Ia~~s~G-dlR~alnlLdq 221 (535)
T PRK08451 204 LARSGNG-SLRDTLTLLDQ 221 (535)
T ss_pred HHHHcCC-cHHHHHHHHHH
Confidence 6666555 44454444443
No 332
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.48 E-value=2.6e-06 Score=105.78 Aligned_cols=148 Identities=20% Similarity=0.330 Sum_probs=95.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------ccccc-hhc--hHHHH-HHHHHHhhcCCCeEEeecc
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASS-ERK--TSAAL-AQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~------l~s~~-~g~--~e~~l-~~~f~~A~~~~P~IL~iDe 464 (958)
..++++||-|.||+|||+|+.++|+.+|..++.||.++ +++.+ +++ .+-.+ ..-|-.|.+ ....+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 45567999999999999999999999999999999764 33322 222 11112 223333433 356788999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC------CCCCh
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS------EGLPP 538 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~------~~Ld~ 538 (958)
+. |+.. ...+.+.++|+.--+ .|..+........++..|.||-|.. .++|.
T Consensus 1620 iN-LaSQ-----------SVlEGLNacLDhR~e-----------ayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPk 1676 (4600)
T COG5271 1620 IN-LASQ-----------SVLEGLNACLDHRRE-----------AYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPK 1676 (4600)
T ss_pred hh-hhHH-----------HHHHHHHHHHhhccc-----------cccccccceeeccCCeeeeeecCchhcCCCcccCCH
Confidence 85 3320 122334444433222 2333333333346777888887643 47899
Q ss_pred hhhccccEEEEcCCCCHHHHHHHHHHhcc
Q 002159 539 TIRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 539 alrrrf~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
.+..||. .+.+...+......|+..+..
T Consensus 1677 SF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1677 SFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred HHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 9999994 567778888888888887764
No 333
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.48 E-value=1.7e-06 Score=107.32 Aligned_cols=172 Identities=18% Similarity=0.264 Sum_probs=100.9
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh-----ccccchh-------hhHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESE-------KNVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-----~~~Gese-------~~vr~lf~~A~~~~P~IL 771 (958)
....|+|+|++|||||++|++|.... +.+|+.+++..+.. .++|... ......|..| ...+|
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL 474 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA---DKSSL 474 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhc---CCCeE
Confidence 35689999999999999999998765 56899998866522 2333211 1111234333 34699
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCCCCChhhcCcCCccc-----
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPDLIDPALLRPGRFDK----- 838 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~----- 838 (958)
|||||+.+. ..+..+|+..|+.-. ....++-+|++|+.+- ..+...|+|..
T Consensus 475 ~Ldei~~L~-------------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~ 538 (686)
T PRK15429 475 FLDEVGDMP-------------LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL---KKMVADREFRSDLYYR 538 (686)
T ss_pred EEechhhCC-------------HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH---HHHHHcCcccHHHHhc
Confidence 999999885 234556665554311 1124678999997652 12222344443
Q ss_pred --eeeccCCCCHHHHHHH---HHHHHhhc----cCC-CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 839 --LLYVGVNSDVSYRERV---LKALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 839 --~I~v~~ppd~~~r~~I---l~~~~~~~----~~~-~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
.+.+.+||=.+++.+| ++.++++. ... ..+.-+.+..-....|-| .+|++++++|+..+
T Consensus 539 l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 539 LNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2345566766666655 34443332 111 122323333322356766 79999999988754
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.7e-07 Score=103.30 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=102.3
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce-------------e
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF-------------L 737 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~-------------i 737 (958)
+..++++.|.+.+++.+...+. .+ +.+..+||+||+|+||+++|.++|..+-..- +
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~----------~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYR----------SG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CCchhhccChHHHHHHHHHHHH----------cC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 3467889999999887765431 12 3355799999999999999999998762210 0
Q ss_pred eec-------------cchhhhccc---cc--------hhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCC
Q 002159 738 SVK-------------GPELINMYI---GE--------SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDS 789 (958)
Q Consensus 738 ~v~-------------~~~l~~~~~---Ge--------se~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~ 789 (958)
.+. -+++.--.. +. .-..+|++-+.+. ...|.|++|||+|.+.
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------- 154 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------- 154 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC---------
Confidence 000 011110000 11 1123555554432 4567899999999874
Q ss_pred cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 790 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 790 ~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
....|.||+.++.. ..+.++|.+|++++.+.|.+++ |+. .+.++. ++.+.-..++...
T Consensus 155 ----~~aanaLLK~LEep---p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~-l~~~~i~~~L~~~ 212 (365)
T PRK07471 155 ----ANAANALLKVLEEP---PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRP-LAPEDVIDALAAA 212 (365)
T ss_pred ----HHHHHHHHHHHhcC---CCCeEEEEEECCchhchHHhhc--cce-EEECCC-CCHHHHHHHHHHh
Confidence 35678888888853 3566777789999999999887 885 667774 6666666666554
No 335
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.47 E-value=6.7e-08 Score=100.24 Aligned_cols=45 Identities=38% Similarity=0.679 Sum_probs=33.6
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+.+|.|++..|..+.-+. .| +.++|++||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAA-----------aG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA-----------AG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH-----------HC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHH-----------cC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 678899998887663221 23 4689999999999999999999876
No 336
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.7e-06 Score=97.75 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=97.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec-------CcccccchhchHHHHHHHHHHhhc----CCCeEEeecch
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC-------HNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDF 465 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~-------~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDei 465 (958)
+..++||||+|+|||++++++|+.+........+ .++. .........++.+++.+.. ....++++||+
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~ 117 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEV 117 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeCh
Confidence 4569999999999999999999988542111100 0010 0111234556666665542 23469999999
Q ss_pred hhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhcccc
Q 002159 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (958)
Q Consensus 466 d~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~ 545 (958)
|.+.. ..+..+++.+.+ .....++|.+|+....+.+++++|+
T Consensus 118 ~~l~~---------------~~~~~ll~~le~----------------------~~~~~~~Il~~~~~~kl~~~l~sr~- 159 (367)
T PRK14970 118 HMLSS---------------AAFNAFLKTLEE----------------------PPAHAIFILATTEKHKIIPTILSRC- 159 (367)
T ss_pred hhcCH---------------HHHHHHHHHHhC----------------------CCCceEEEEEeCCcccCCHHHHhcc-
Confidence 87643 112333322211 1344566667777888888998876
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 546 HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 546 ~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
..+.+..|++++...++...+.+... ..+ .+.+..++..+. +|+..+..
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~-~~al~~l~~~~~----gdlr~~~~ 208 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGI---KFE-DDALHIIAQKAD----GALRDALS 208 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhCC----CCHHHHHH
Confidence 56899999999988888876655432 122 334566666543 45555544
No 337
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.45 E-value=8.9e-08 Score=106.66 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--CcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC--HNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~--~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
..|.-+.|.||+||||||++|.||+-..+.-++|.. .++.. . .-....+..+||.-. ..|-.-+.+++..=...
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~-l-~P~~R~iamVFQ~yA-LyPhmtV~~Niaf~Lk~- 102 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD-L-PPEKRGIAMVFQNYA-LYPHMTVYENIAFGLKL- 102 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-C-ChhHCCEEEEeCCcc-ccCCCcHHHHhhhhhhh-
Confidence 333449999999999999999999998887666543 22222 1 112233444454332 12333344444211110
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCC
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGP 552 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~ 552 (958)
.+ ........++.++.+. .+|+ .+..|...++|+|
T Consensus 103 --~~--~~k~ei~~rV~eva~~---------------------------------------L~l~-~lL~r~P~~LSGG- 137 (338)
T COG3839 103 --RG--VPKAEIDKRVKEVAKL---------------------------------------LGLE-HLLNRKPLQLSGG- 137 (338)
T ss_pred --CC--CchHHHHHHHHHHHHH---------------------------------------cCCh-hHHhcCcccCChh-
Confidence 00 0011122223322211 2333 3456668999999
Q ss_pred CCHHHHHHHHHHhccCCcccCCCCCc
Q 002159 553 LTEQQRVEMLSQLLQPVSELTSDTGS 578 (958)
Q Consensus 553 Pde~qR~~Il~~ll~~~~~l~~D~~~ 578 (958)
++||++|.+++.+++..+..|+..
T Consensus 138 --QrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 138 --QRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred --hHHHHHHHHHHhcCCCEEEecCch
Confidence 999999999999998877666654
No 338
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.45 E-value=3.4e-07 Score=93.52 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCcccccchhchHHHHHHHHHHhh----cCCCeEEeecchhh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI----HVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDV 467 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~----~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iDeid~ 467 (958)
+-.+++|.||+|+|||.+++++|..+.. +++.+++..+..... ....+...+..+. .....|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456899999999999999999999996 999999987665111 1111111111110 01123999999999
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~ 534 (958)
+.+. .....+. ....+...|-++++ +|.............++++|+|+|-..
T Consensus 80 a~~~---~~~~~~v--~~~~V~~~LL~~le----------~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS---NSGGADV--SGEGVQNSLLQLLE----------GGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT---TTTCSHH--HHHHHHHHHHHHHH----------HSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc---ccccchh--hHHHHHHHHHHHhc----------ccceecccceEEEeCCceEEEeccccc
Confidence 8773 1111111 11233443334332 111122222345577899999998654
No 339
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=3.3e-06 Score=99.26 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=92.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcccccchhchHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI-------------------------HVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~-------------------------~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
.+..+||+||+|+||||+++++|+.+.. .++++++.+ ......++++.+
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~ 111 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINE 111 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHH
Confidence 3456899999999999999999998743 223333211 011223333322
Q ss_pred Hhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEE
Q 002159 451 TAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (958)
Q Consensus 451 ~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (958)
... .....|++|||+|.+.. .....++ ++++. ....+++
T Consensus 112 ~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LL-k~lEe---------------------p~~~~~~ 154 (451)
T PRK06305 112 TVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLL-KTLEE---------------------PPQHVKF 154 (451)
T ss_pred HHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHH-HHhhc---------------------CCCCceE
Confidence 221 23568999999988754 1122223 33221 1456778
Q ss_pred EEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 527 IaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
|.+|+.+..+.+.+++|+ ..+.+..+++++-...++..++.... ..+ .+.++.++..+.|
T Consensus 155 Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~---~i~-~~al~~L~~~s~g 214 (451)
T PRK06305 155 FLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGI---ETS-REALLPIARAAQG 214 (451)
T ss_pred EEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 888888889999999886 57899999999888877776654322 122 3345666666554
No 340
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.9e-07 Score=95.41 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-ccchhchHHH-HHHHHHHhh----cCCCeEEeecchhhhhhc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM-ASSERKTSAA-LAQAFNTAQ----SYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~-s~~~g~~e~~-l~~~f~~A~----~~~P~IL~iDeid~L~~~ 471 (958)
.+|||+||.|||||.||+.+|..++.+|-.-++..|. +.|.|+...+ +...++.|. .....|++|||||.++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 4799999999999999999999999999998888776 4677776444 455555544 235689999999999987
Q ss_pred ccCCCCCCc
Q 002159 472 VSNESLPND 480 (958)
Q Consensus 472 ~s~~~~~~~ 480 (958)
..+..-.+|
T Consensus 178 SeN~SITRD 186 (408)
T COG1219 178 SENPSITRD 186 (408)
T ss_pred CCCCCcccc
Confidence 654433333
No 341
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.44 E-value=1.6e-06 Score=97.91 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=101.8
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhh-----hccccchhh-------hHHHHHHHHHhcCCcE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI-----NMYIGESEK-------NVRDIFQKARSARPCV 770 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~-----~~~~Gese~-------~vr~lf~~A~~~~P~I 770 (958)
.....|+|+|++||||+++|++|.... +.+|+.+++..+- ..++|.... .....|..| ....
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGt 103 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGT 103 (326)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCe
Confidence 345679999999999999999997665 4689999987652 223332110 111233333 3469
Q ss_pred EEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCC-------CCCChhhcCcCC
Q 002159 771 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP-------DLIDPALLRPGR 835 (958)
Q Consensus 771 LfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp-------~~ldpaLlrpgR 835 (958)
|||||+|.+. ..+...|+..++.-. ....++.||+||+.. ..+.+.|.. |
T Consensus 104 L~l~~i~~L~-------------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~ 168 (326)
T PRK11608 104 LFLDELATAP-------------MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--R 168 (326)
T ss_pred EEeCChhhCC-------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--h
Confidence 9999999986 234555555554311 111257888888764 245566666 6
Q ss_pred cc-ceeeccCCCCHHHHHHH---HHHHHh----hccCC--CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 836 FD-KLLYVGVNSDVSYRERV---LKALTR----KFKLL--EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 836 fd-~~I~v~~ppd~~~r~~I---l~~~~~----~~~~~--~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
|. ..|.+ ||=.+++.+| +..++. +.... ..++-+.+..-....|-| .+|++++++|+..+
T Consensus 169 l~~~~i~l--PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 169 LAFDVVQL--PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred cCCCEEEC--CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 73 34555 4655555554 333332 22211 233434333333457776 68889888877643
No 342
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.43 E-value=4.4e-07 Score=104.71 Aligned_cols=195 Identities=19% Similarity=0.328 Sum_probs=117.8
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhh---
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI--- 745 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~--- 745 (958)
.++++|.|-......+.+. ....-+....||+.|.+||||..+|++|-+.. +.+|+.++|..+-
T Consensus 242 y~f~~Iig~S~~m~~~~~~----------akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 242 YTFDDIIGESPAMLRVLEL----------AKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cchhhhccCCHHHHHHHHH----------HHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 4577777755443333221 12233456789999999999999999998876 5789999985432
Q ss_pred ------hc----cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----C---
Q 002159 746 ------NM----YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----L--- 807 (958)
Q Consensus 746 ------~~----~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~--- 807 (958)
+- |.|.....-..+|+.|... -||+|||..+. -.+...||.-|+. +
T Consensus 312 lESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 312 LESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC-------------HHHHHHHHHHHhhceEEecCCC
Confidence 21 3333332234567766554 89999997764 4567777776652 1
Q ss_pred CCCCCcEEEEEecCCCCCCChhhcCcCCccceee-------ccCCCCHHHHHHHH---HHHHh----hccC-CCCcCHHH
Q 002159 808 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY-------VGVNSDVSYRERVL---KALTR----KFKL-LEDVSLYS 872 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~-------v~~ppd~~~r~~Il---~~~~~----~~~~-~~d~~l~~ 872 (958)
....-+|-||+|||+.= - .+...|||-.-+| +.+||=.++.++|. ..++. +++- ...+.-+.
T Consensus 376 ~~~~vDVRIIAATN~nL--~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 376 KPIPVDVRIIAATNRNL--E-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CceeeEEEEEeccCcCH--H-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 12234699999999842 2 2334577765444 45677666666653 23333 2221 11222233
Q ss_pred HHhhCCCCCCH--HHHHHHHHHHHH
Q 002159 873 IAKKCPPNFTG--ADMYALCADAWF 895 (958)
Q Consensus 873 la~~~t~g~sG--aDi~~l~~~A~~ 895 (958)
++.-..+.|-| ++|.+++.+|+.
T Consensus 453 ~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 453 LALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHh
Confidence 33322356766 688888888775
No 343
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=3.4e-07 Score=98.02 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=83.2
Q ss_pred cccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 390 SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 390 ~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
-.|.++.+..+.|+|.+||||||++|.+.+-..+..++|-... .....+.
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g-------~~i~~~~----------------------- 81 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------KDITKLS----------------------- 81 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC-------cchhhcc-----------------------
Confidence 3455667777999999999999999999999888777665421 1100000
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEE
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEIS 549 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIs 549 (958)
. .+....+.++|..+ ++++....|++|++|
T Consensus 82 ~-----------~~~~~~v~elL~~V---------------------------------------gl~~~~~~ryPhelS 111 (268)
T COG4608 82 K-----------EERRERVLELLEKV---------------------------------------GLPEEFLYRYPHELS 111 (268)
T ss_pred h-----------hHHHHHHHHHHHHh---------------------------------------CCCHHHhhcCCcccC
Confidence 0 01122344444322 467788889999999
Q ss_pred cCCCCHHHHHHHHHHhccCCcccCC-------CCCcHHHHHHHh---hhcCC----CChhhHHHH
Q 002159 550 MGPLTEQQRVEMLSQLLQPVSELTS-------DTGSEEFVKDII---GQTSG----FMPRDLHAL 600 (958)
Q Consensus 550 ig~Pde~qR~~Il~~ll~~~~~l~~-------D~~~~~~L~~la---~~t~G----fv~~DL~~L 600 (958)
+| +.||..|++++.-++..+.. |++....+-.+. +...| |++||+...
T Consensus 112 GG---QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 112 GG---QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred ch---hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 99 99999999999988876633 333322222222 12223 899998764
No 344
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.41 E-value=1e-06 Score=106.62 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=68.2
Q ss_pred cEEEEEecCCC--CCCChhhcCcCCcc---ceeecc--CCCCHHHHHHHHHHHHhhcc---CCCCcCHH---HHHhhC--
Q 002159 813 DLFIIGASNRP--DLIDPALLRPGRFD---KLLYVG--VNSDVSYRERVLKALTRKFK---LLEDVSLY---SIAKKC-- 877 (958)
Q Consensus 813 ~v~VI~aTNrp--~~ldpaLlrpgRfd---~~I~v~--~ppd~~~r~~Il~~~~~~~~---~~~d~~l~---~la~~~-- 877 (958)
++.||+++|+. ..+||+|.. ||. ..+++. .+.+.+.+..+++.+.+... ....++-+ .+.+..
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889999885 467899988 885 445554 22345666666654443321 11233322 222211
Q ss_pred -C--CC---CCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002159 878 -P--PN---FTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYEL 948 (958)
Q Consensus 878 -t--~g---~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~ 948 (958)
. .+ ..-++|..++++|...|..+. ...++.+|..+|... ..++.++.++.|-.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~-----------------~~~i~~~~v~~a~~~-~~~i~~~~~~~~l~ 413 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEG-----------------AELTTAEHVLEAKKI-ARSIEQQLADRYIE 413 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhc-----------------cceecHHHHHHHHHh-hhhhhHHHHHHHhC
Confidence 0 11 235788999999888776542 124788899888854 34466666666654
No 345
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.2e-06 Score=97.96 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=113.5
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc----------eeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN----------FLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~----------~i~v~~~ 742 (958)
.|+++.|.+.+++.+...+. .+ +-+..+||+||.|+||+++|+++|..+-.. +...+-|
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~----------~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK----------QN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH----------hC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 47889999999887766542 11 225679999999999999999999875221 1111222
Q ss_pred hhhhcc-----ccc--------------------hhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchH
Q 002159 743 ELINMY-----IGE--------------------SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVM 793 (958)
Q Consensus 743 ~l~~~~-----~Ge--------------------se~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~ 793 (958)
++.-.+ -|. .-..+|++.+.+. .....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 222100 011 0124566655554 3455799999998885
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHH
Q 002159 794 DRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSI 873 (958)
Q Consensus 794 ~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~l 873 (958)
....|.||+.|+.. ++. ++|..|+.|+.|-|.+++ |+ ..+.|+. ++.+.-..+|+........ +.++..+
T Consensus 138 ~~aaNaLLK~LEEP---p~~-~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~-l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 138 EAAANALLKTLEEP---GNG-TLILIAPSPESLLPTIVS--RC-QIIPFYR-LSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHHHhCC---CCC-eEEEEECChHhCcHHHHh--hc-eEEecCC-CCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 34678899998864 233 456677789999999998 88 4677874 6667667777654321111 1224566
Q ss_pred HhhCCCCCCHHHHHHHHH
Q 002159 874 AKKCPPNFTGADMYALCA 891 (958)
Q Consensus 874 a~~~t~g~sGaDi~~l~~ 891 (958)
+... . -+..+..++.+
T Consensus 208 ~~~a-~-Gs~~~al~~l~ 223 (314)
T PRK07399 208 LALA-Q-GSPGAAIANIE 223 (314)
T ss_pred HHHc-C-CCHHHHHHHHH
Confidence 6652 3 34444444443
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.39 E-value=2.4e-06 Score=84.54 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=79.4
Q ss_pred cCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--CcccccchhchHHHHHHHHHHhhcCCCeEE---
Q 002159 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC--HNLMASSERKTSAALAQAFNTAQSYSPTIL--- 460 (958)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~--~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL--- 460 (958)
.+++-.+.+..|..+++.||+|||||||+|++|.-..+..+++-. .++. .......++-..... +.|..+
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs----~~~pea~Rq~VsY~~-Q~paLfg~t 92 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS----TLKPEAYRQQVSYCA-QTPALFGDT 92 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc----ccChHHHHHHHHHHH-cCccccccc
Confidence 445555555556669999999999999999999998877666543 2221 122334444444443 345543
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhh
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI 540 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~al 540 (958)
+-|++ +.+-+-. .+.-.......+|.++ ++|..+
T Consensus 93 VeDNl--ifP~~~r-----~rr~dr~aa~~llar~---------------------------------------~l~~~~ 126 (223)
T COG4619 93 VEDNL--IFPWQIR-----NRRPDRAAALDLLARF---------------------------------------ALPDSI 126 (223)
T ss_pred hhhcc--ccchHHh-----ccCCChHHHHHHHHHc---------------------------------------CCchhh
Confidence 22332 2221100 0000112233333332 334444
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~ 577 (958)
...-..++++| |+||.+|++.+--.+..|.+|+.
T Consensus 127 L~k~it~lSGG---E~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 127 LTKNITELSGG---EKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred hcchhhhccch---HHHHHHHHHHhhcCCceEEecCc
Confidence 54445689999 99999999998777777766654
No 347
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.5e-07 Score=98.99 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=45.1
Q ss_pred hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC----CChhhHHHHHH
Q 002159 539 TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG----FMPRDLHALVA 602 (958)
Q Consensus 539 alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G----fv~~DL~~Lv~ 602 (958)
.++.|-..++|+| |.||+-|+++++++++++.+|+.. ..+|.++.++ | .+.||+..+.+
T Consensus 131 ~~~~r~i~~LSGG---Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 131 DLRDRQIGELSGG---QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMA 204 (254)
T ss_pred hhhCCcccccCcH---HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHh
Confidence 4566777899999 999999999999999988777654 2445555555 4 78888887643
No 348
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=3.3e-06 Score=101.96 Aligned_cols=200 Identities=11% Similarity=0.110 Sum_probs=105.0
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee-ccchh---hh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV-KGPEL---IN 746 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v-~~~~l---~~ 746 (958)
+...+++.|.+...+.+...+.. ...+..++.-++|+|||||||||+++++|++++..++.. +.... .+
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~-------~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKA-------QVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------cccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 34566777766655544433210 011234455699999999999999999999998766542 11100 00
Q ss_pred cc------------ccchhhhHHHHHHHHHh----------cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHH-h
Q 002159 747 MY------------IGESEKNVRDIFQKARS----------ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA-E 803 (958)
Q Consensus 747 ~~------------~Gese~~vr~lf~~A~~----------~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~-~ 803 (958)
.| +...-+.++.++..|.. ....||||||++.++.. . .+.+..+|. .
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~---------~~~lq~lLr~~ 222 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D---------TRALHEILRWK 222 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h---------HHHHHHHHHHH
Confidence 00 01122344555555542 24569999999987731 1 123444444 2
Q ss_pred hcCCCCCCCcEEEEEecCCCC--------------CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc--cCCC-
Q 002159 804 IDGLNDSSQDLFIIGASNRPD--------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF--KLLE- 866 (958)
Q Consensus 804 ldg~~~~~~~v~VI~aTNrp~--------------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~--~~~~- 866 (958)
... ...-.+|+++|..|. .|.++++.--|.. +|.|+ |.....-...|+..++.. ....
T Consensus 223 ~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~Fn-Pia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 223 YVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFN-PIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeC-CCCHHHHHHHHHHHHHhhhhccccc
Confidence 211 112223433442221 1346777422443 56776 366666555555444432 1111
Q ss_pred -----CcCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002159 867 -----DVSLYSIAKKCPPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 867 -----d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A 897 (958)
...+..|+.. +++|++.++..--+.+
T Consensus 298 ~~~p~~~~l~~I~~~-----s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 298 IKVPKKTSVELLCQG-----CSGDIRSAINSLQFSS 328 (637)
T ss_pred cccCCHHHHHHHHHh-----CCChHHHHHHHHHHHH
Confidence 1234555553 6789998877544433
No 349
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=9e-08 Score=102.35 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=79.4
Q ss_pred cccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--cCcccc-cchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 390 SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS--CHNLMA-SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 390 ~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~--~~~l~s-~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
-.+.++.+..++|+|+||+|||||++.+++-+.+..+.|. +.++.. ....+....+.-+||.+..+--+--+.||+.
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 3444555666999999999999999999999887765553 322211 1111112222223443333222222334432
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
+.+ .+.+.. ...+..++...++.+ ++. .+++|..+
T Consensus 103 -fg~--~n~g~~--~~e~~~rv~~~l~~v---------------------------------------gl~-~~~~r~p~ 137 (235)
T COG1122 103 -FGL--ENLGLP--REEIEERVAEALELV---------------------------------------GLE-ELLDRPPF 137 (235)
T ss_pred -hch--hhcCCC--HHHHHHHHHHHHHHc---------------------------------------Cch-hhccCCcc
Confidence 221 011111 111223333333222 121 33667789
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCc
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGS 578 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~ 578 (958)
.+|+| |+||++|+..+..++..+.+|+..
T Consensus 138 ~LSGG---qkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 138 NLSGG---QKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred ccCCc---ceeeHHhhHHHHcCCCEEEEcCCC
Confidence 99999 999999999999999888767654
No 350
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.36 E-value=9.4e-06 Score=91.56 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=38.6
Q ss_pred cCcEEEEEecCCCC-CCChhhhccccEEEEcCCCCH-HHHHHHHHHhc
Q 002159 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLTE-QQRVEMLSQLL 566 (958)
Q Consensus 521 ~~~ViVIaaTn~~~-~Ld~alrrrf~~eIsig~Pde-~qR~~Il~~ll 566 (958)
..++++|+++|-.+ .+++++..||...+.++.|+. ++|.+|++...
T Consensus 172 ~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 172 PARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 45789999988554 689999999999999999976 89999998743
No 351
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=8.6e-07 Score=100.15 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=94.8
Q ss_pred cccccc-ccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce-e--------------
Q 002159 674 WEDVGG-LEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF-L-------------- 737 (958)
Q Consensus 674 ~~di~G-l~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~-i-------------- 737 (958)
|+.+.| .+.+.+.+...+. .-+.+..+||+||+|+||+++|+++|..+-..- .
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 666655 7777766654431 112345689999999999999999998763210 0
Q ss_pred -eeccchhhhcc-ccc--hhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q 002159 738 -SVKGPELINMY-IGE--SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND 809 (958)
Q Consensus 738 -~v~~~~l~~~~-~Ge--se~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~ 809 (958)
.-+-+++.-.. .|. +-..+|++.+.+. .....|++|||+|.+. ....|.||+.|+..
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-------------~~a~NaLLK~LEEP-- 137 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-------------ASAANSLLKFLEEP-- 137 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-------------HHHHHHHHHHhcCC--
Confidence 00001111000 111 1234566655443 2344699999998874 34678999999864
Q ss_pred CCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHH
Q 002159 810 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 810 ~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~ 856 (958)
++++++|.+|+.++.|-|++++ |+. .+++.. ++.+.-..+++
T Consensus 138 -p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~-~~~~~~~~~L~ 179 (329)
T PRK08058 138 -SGGTTAILLTENKHQILPTILS--RCQ-VVEFRP-LPPESLIQRLQ 179 (329)
T ss_pred -CCCceEEEEeCChHhCcHHHHh--hce-eeeCCC-CCHHHHHHHHH
Confidence 4566677788888999999998 885 566664 55555555554
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.35 E-value=6.6e-07 Score=99.18 Aligned_cols=167 Identities=18% Similarity=0.301 Sum_probs=98.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE--ecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhh
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY--SCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I--~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
.+.++.+..+.|+|.+||||||+.+++..-+... +.| .+.++.+. +...++- ....-.++|-|-+.+|
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~----~~~~mrp-----lR~~mQvVFQDPygSL 376 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL----SRKEMRP-----LRRRMQVVFQDPYGSL 376 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc----Chhhhhh-----hhhhceEEEeCCCCCC
Confidence 3345667779999999999999999999887654 443 34443322 2222211 1123468888888888
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEE
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eI 548 (958)
.+..+ ...-+.+-| .+.+.-.+..+ -..+..... ..-++||+.+.|+.||+
T Consensus 377 sPRmt----------V~qII~EGL-~vh~~~ls~~e-------R~~rv~~aL-----------~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 377 SPRMT----------VGQIIEEGL-RVHEPKLSAAE-------RDQRVIEAL-----------EEVGLDPATRNRYPHEF 427 (534)
T ss_pred CcccC----------HHHHhhhhh-hhcCCCCCHHH-------HHHHHHHHH-----------HHcCCChhHhhcCCccc
Confidence 76321 111111111 01110000000 000111111 23478999999999999
Q ss_pred EcCCCCHHHHHHHHHHhccCCcccCCCCCcH-----------HHHHHHhhhcCC----CChhhHHHH
Q 002159 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSE-----------EFVKDIIGQTSG----FMPRDLHAL 600 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~~~~l~~D~~~~-----------~~L~~la~~t~G----fv~~DL~~L 600 (958)
|+| ++||.+|++.+.-++..+.+|+... +.|.++ ++-+| |++||+.-.
T Consensus 428 SGG---QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L-Q~k~~LsYLFISHDL~Vv 490 (534)
T COG4172 428 SGG---QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL-QQKHGLSYLFISHDLAVV 490 (534)
T ss_pred Ccc---hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH-HHHhCCeEEEEeccHHHH
Confidence 999 9999999999998887776665541 223333 33455 899999754
No 353
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.35 E-value=3e-06 Score=101.48 Aligned_cols=174 Identities=21% Similarity=0.244 Sum_probs=102.3
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh-----ccccchhh-------hHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESEK-------NVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-----~~~Gese~-------~vr~lf~~A~~~~P~IL 771 (958)
....|+|+|++||||+++|++|.... +.+|+.+++..+-. ..+|.... .....|..| ....|
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL 285 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTL 285 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEE
Confidence 36689999999999999999998875 46899999876532 22332110 011234443 34689
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCCCCChhhcCcCCccc-----
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPDLIDPALLRPGRFDK----- 838 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~----- 838 (958)
||||||.+. ..+...|+..++.-. ....++-||+|||+.- ..+...|+|..
T Consensus 286 ~ldeI~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l---~~~~~~~~f~~dL~~r 349 (509)
T PRK05022 286 FLDEIGELP-------------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL---REEVRAGRFRADLYHR 349 (509)
T ss_pred EecChhhCC-------------HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH---HHHHHcCCccHHHHhc
Confidence 999999986 234555665554211 1123678999998752 12222344432
Q ss_pred --eeeccCCCCHHHHHHHH---HHHHhhc----c-CCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHH
Q 002159 839 --LLYVGVNSDVSYRERVL---KALTRKF----K-LLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAK 899 (958)
Q Consensus 839 --~I~v~~ppd~~~r~~Il---~~~~~~~----~-~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A~~ 899 (958)
.+.+.+||=.+++.+|. +.++++. . -...++-+.+..-..+.|.| .+|++++.+|+..+-.
T Consensus 350 l~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 350 LSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred ccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 23344566666666553 3333322 1 11223333333332356766 7999999998887643
No 354
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.34 E-value=5.5e-07 Score=91.70 Aligned_cols=118 Identities=27% Similarity=0.514 Sum_probs=75.1
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh-----ccccchh-------hhHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESE-------KNVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-----~~~Gese-------~~vr~lf~~A~~~~P~IL 771 (958)
.+..|+|+|++||||+++|++|.... +.+|+.+++..+-. ..+|... ..-..+|..|... +|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EE
Confidence 35789999999999999999998865 46899999976532 2344321 1223677777555 99
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----CCC---CCCcEEEEEecCCCCCCChhhcCcCCccceeecc
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----LND---SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVG 843 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~~~---~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~ 843 (958)
|||||+.|. ..+...|+..|+. +.. ..-++-||+||+.+ +.. +...|+|..-+|.-
T Consensus 98 ~Ld~I~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~-~v~~g~fr~dLy~r 161 (168)
T PF00158_consen 98 FLDEIEDLP-------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEE-LVEQGRFREDLYYR 161 (168)
T ss_dssp EEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHH-HHHTTSS-HHHHHH
T ss_pred eecchhhhH-------------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHH-HHHcCCChHHHHHH
Confidence 999999986 3455666666652 111 12368999999863 333 34447887666654
No 355
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=98.23 Aligned_cols=147 Identities=13% Similarity=0.245 Sum_probs=91.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEecCcccccchhchHHHHHHHHHH
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHV-------------------------VEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~-------------------------~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
+..+||+||+|+||||+++++|+.++... ++++.. .......++++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~------~~~~vd~ir~ii~~ 111 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA------SHTSVDDAREIIER 111 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecc------ccCCHHHHHHHHHH
Confidence 44589999999999999999999985321 222211 11223344554443
Q ss_pred hhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
+.. ....|++|||+|.+.. ..+..+++.+.+. ...+++|
T Consensus 112 ~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk~LEep----------------------p~~tv~I 154 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVHMLST---------------AAFNALLKTLEEP----------------------PPHAIFI 154 (585)
T ss_pred HhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHHHHhcC----------------------CCCeEEE
Confidence 331 2346999999987753 1233333332211 3456777
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.+|+....+.+.+++|+ ..+.+..++..+...+++..+..... ..+ .+.+..++..+.|
T Consensus 155 l~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl---~i~-~eal~~La~~s~G 213 (585)
T PRK14950 155 LATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGI---NLE-PGALEAIARAATG 213 (585)
T ss_pred EEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 77778888888888875 46889889999888888877654332 122 3345666666554
No 356
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=4.1e-06 Score=97.17 Aligned_cols=148 Identities=11% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--------------------------------EEEEecCcccccchhchHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------------VVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~--------------------------------~~~I~~~~l~s~~~g~~e~ 443 (958)
.+..+||+||+|+||||+|+++|+.+... +.++++. ......
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~------~~~~id 110 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAA------SNNSVD 110 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccc------ccCCHH
Confidence 34468999999999999999999998652 1111111 011234
Q ss_pred HHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhh
Q 002159 444 ALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKI 519 (958)
Q Consensus 444 ~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~ 519 (958)
.++++.+.+.. ....+++|||+|.+.. .....+++.+.+
T Consensus 111 ~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~~~~~LLk~LEe---------------------- 153 (397)
T PRK14955 111 DIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------AAFNAFLKTLEE---------------------- 153 (397)
T ss_pred HHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------HHHHHHHHHHhc----------------------
Confidence 45554444421 1235899999987753 112233322211
Q ss_pred hcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 520 CRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 520 ~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
....+++|.+|+.+..+.+.+++|. ..+++..+++.+-...++..++.... ..+ .+.++.++..+.|
T Consensus 154 p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~-~~al~~l~~~s~g 220 (397)
T PRK14955 154 PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGI---SVD-ADALQLIGRKAQG 220 (397)
T ss_pred CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 1345666777777788888888775 36888888888877777766643322 122 3345666666554
No 357
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.34 E-value=8e-06 Score=96.37 Aligned_cols=216 Identities=22% Similarity=0.293 Sum_probs=135.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC----------Cceeeeccchhhhc----------cccchhh------hHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS----------LNFLSVKGPELINM----------YIGESEK------NVRDIFQ 761 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~----------~~~i~v~~~~l~~~----------~~Gese~------~vr~lf~ 761 (958)
+..+.+.|-||||||.++..+..++. ..++.++|-.+.+. +.|+.-. .+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 34588899999999999999988663 56778887555432 3343211 1222233
Q ss_pred HH-HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhc-C-cCCcc-
Q 002159 762 KA-RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALL-R-PGRFD- 837 (958)
Q Consensus 762 ~A-~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLl-r-pgRfd- 837 (958)
.. ....++|++|||+|.|.... ..++.-+..+- ......++||+.+|..+....-|. | ..|++
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWp---t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~ 568 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWP---TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGL 568 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCC---cCCCCceEEEEecccccCHHHHhccchhhhccc
Confidence 11 23567999999999998542 23555554432 223457889999998886554443 1 12443
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 002159 838 KLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRID 915 (958)
Q Consensus 838 ~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~ 915 (958)
..|.|. |.+.++.++|+...++....-.+--++-+|++. ..-|| .--..+|++|...|-.+.... .
T Consensus 569 tRi~F~-pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV-AavSGDaRraldic~RA~Eia~~~~~~~----------k 636 (767)
T KOG1514|consen 569 TRICFQ-PYTHEQLQEIISARLKGLDAFENKAIELVARKV-AAVSGDARRALDICRRAAEIAEERNVKG----------K 636 (767)
T ss_pred eeeecC-CCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH-HhccccHHHHHHHHHHHHHHhhhhcccc----------c
Confidence 345555 488999999999998877433222233444442 34455 345578999998888776411 1
Q ss_pred cCCcccccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002159 916 QADSVVVEYDDFVKVLRELSPSLSMAELKKYEL 948 (958)
Q Consensus 916 ~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~ 948 (958)
.+....|++.|+.+|+.++.-+.-..-|....-
T Consensus 637 ~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~ 669 (767)
T KOG1514|consen 637 LAVSQLVGILHVMEAINEMLASPYIKALKGLSF 669 (767)
T ss_pred ccccceeehHHHHHHHHHHhhhhHHHHhcchHH
Confidence 123347899999999999877654444443333
No 358
>PRK08181 transposase; Validated
Probab=98.34 E-value=1.5e-06 Score=94.96 Aligned_cols=102 Identities=22% Similarity=0.351 Sum_probs=67.8
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhcccc-chhhhHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIG-ESEKNVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~G-ese~~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
..+.+++|+||+|||||+|+.+++.++ |..++.++.++++..+.. ..+....+.++... .+.+|+|||++.+..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK 181 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC
Confidence 456789999999999999999999754 677888888888775422 12233445555543 457999999987653
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
. ......+-+++....+ . . -+|.|||.+
T Consensus 182 ~--------~~~~~~Lf~lin~R~~---~--~-s~IiTSN~~ 209 (269)
T PRK08181 182 D--------QAETSVLFELISARYE---R--R-SILITANQP 209 (269)
T ss_pred C--------HHHHHHHHHHHHHHHh---C--C-CEEEEcCCC
Confidence 2 1123455555554332 1 1 367788876
No 359
>PRK04132 replication factor C small subunit; Provisional
Probab=98.33 E-value=6.1e-06 Score=102.22 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=103.5
Q ss_pred eEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCC------CeEEeecch
Q 002159 399 AVLLHG--LPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS------PTILLLRDF 465 (958)
Q Consensus 399 ~VLL~G--ppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~------P~IL~iDei 465 (958)
.-+..| |++.||||+|+++|+++ +.+++++|+++-. ....++++...+.... ..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 99999999999999998 5679999998622 2345666655443222 269999999
Q ss_pred hhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhcccc
Q 002159 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (958)
Q Consensus 466 d~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~ 545 (958)
|.+.. .....|...++.. ...+.+|.+||.+..+.+.+++|.
T Consensus 640 D~Lt~----------------~AQnALLk~lEep---------------------~~~~~FILi~N~~~kIi~tIrSRC- 681 (846)
T PRK04132 640 DALTQ----------------DAQQALRRTMEMF---------------------SSNVRFILSCNYSSKIIEPIQSRC- 681 (846)
T ss_pred ccCCH----------------HHHHHHHHHhhCC---------------------CCCeEEEEEeCChhhCchHHhhhc-
Confidence 98854 1122333333321 467889999999999999999984
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 546 HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 546 ~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
..+.+..|+..+-...++..+.+... +.+ +..+..++..+.|
T Consensus 682 ~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~-~e~L~~Ia~~s~G 723 (846)
T PRK04132 682 AIFRFRPLRDEDIAKRLRYIAENEGL---ELT-EEGLQAILYIAEG 723 (846)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHHcCC
Confidence 78999999999888888877654332 122 4457778877776
No 360
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.32 E-value=1.2e-05 Score=83.89 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHH
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
..+.|...-..++. -.+..+|||+|..|||||+|+|++-++. |..+++|+..++.. +..+++.
T Consensus 68 qk~~L~~NT~~F~~-----G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~ 133 (287)
T COG2607 68 QKEALVRNTEQFAE-----GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVEL 133 (287)
T ss_pred HHHHHHHHHHHHHc-----CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHH
Confidence 34555555443332 1344679999999999999999998887 67899998766432 3444444
Q ss_pred hhc-CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 452 AQS-YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 452 A~~-~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.+. ....|+|.|++. +-. + ..-.+.|+..++.-. .....+|+|.||+
T Consensus 134 Lr~~~~kFIlFcDDLS-Fe~-----g---------d~~yK~LKs~LeG~v-----------------e~rP~NVl~YATS 181 (287)
T COG2607 134 LRARPEKFILFCDDLS-FEE-----G---------DDAYKALKSALEGGV-----------------EGRPANVLFYATS 181 (287)
T ss_pred HhcCCceEEEEecCCC-CCC-----C---------chHHHHHHHHhcCCc-----------------ccCCCeEEEEEec
Confidence 432 345799999873 211 1 111233333332110 1126789999999
Q ss_pred CCCCCCCh----------------------hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhh
Q 002159 531 DSSEGLPP----------------------TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (958)
Q Consensus 531 n~~~~Ld~----------------------alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~ 588 (958)
|+..-++. ++-.||.--+++..+++++-+.|...+++...+-..+......-.++|..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 98865542 12237888999999999999999999997765422121122222345554
Q ss_pred cCCCChhhHHH
Q 002159 589 TSGFMPRDLHA 599 (958)
Q Consensus 589 t~Gfv~~DL~~ 599 (958)
..|-+|+--.+
T Consensus 262 rg~RSGR~A~Q 272 (287)
T COG2607 262 RGGRSGRVAWQ 272 (287)
T ss_pred cCCCccHhHHH
Confidence 45555544333
No 361
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=3.5e-06 Score=94.40 Aligned_cols=127 Identities=16% Similarity=0.228 Sum_probs=86.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCc------------------------eeeeccchhhhccccchhhhHHHHHHH
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQK 762 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~vr~lf~~ 762 (958)
.+..+||+||.|+||+++|+++|..+-.. |+.+... -++.+ .-..+|++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHHH
Confidence 35679999999999999999999876321 2222110 01111 23456665554
Q ss_pred HH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccc
Q 002159 763 AR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 838 (958)
Q Consensus 763 A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~ 838 (958)
+. .....|++||++|.+. ....|.||+.|+. ...++++|.+|+.|+.|-|.+++ |+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLEE---Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT-------------EAAANALLKTLEE---PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HhhccccCCceEEEEechhhhC-------------HHHHHHHHHHhcC---CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 43 3445799999999885 4567899999885 35678888899999999999998 886
Q ss_pred eeeccCCCCHHHHHHHHHH
Q 002159 839 LLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 839 ~I~v~~ppd~~~r~~Il~~ 857 (958)
.+.++. ++.+.-...|..
T Consensus 160 ~~~~~~-~~~~~~~~~L~~ 177 (325)
T PRK06871 160 TWLIHP-PEEQQALDWLQA 177 (325)
T ss_pred EEeCCC-CCHHHHHHHHHH
Confidence 456764 555555555544
No 362
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.4e-05 Score=91.29 Aligned_cols=139 Identities=14% Similarity=0.257 Sum_probs=90.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC--cEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GI--HVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~--~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
..++|||+.|+|||.|+++++++. ++ .++.+...+++..........-.+.|.+- ++--+++||+++.+..+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~--y~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK--YSLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh--hccCeeeechHhHhcCCh
Confidence 349999999999999999999986 33 45566555444333222111111223222 234588999999987621
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCC---ChhhhccccE--E
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL---PPTIRRCFSH--E 547 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L---d~alrrrf~~--e 547 (958)
....++-.+++.+.+ .++-+|+.+-..|..+ .+.+++||.. .
T Consensus 192 ----------~~qeefFh~FN~l~~-----------------------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 192 ----------RTQEEFFHTFNALLE-----------------------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred ----------hHHHHHHHHHHHHHh-----------------------cCCEEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 134556666666543 3445556555566554 5899999765 5
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcc
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSE 571 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~ 571 (958)
+.+..||.+.|.+|++........
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~~~~~ 262 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAEDRGI 262 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCC
Confidence 788999999999999997755443
No 363
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.31 E-value=4.8e-06 Score=95.91 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=75.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEec----Ccccccchhc------hHHHHHHHHHHhhc--CCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGI--H-----VVEYSC----HNLMASSERK------TSAALAQAFNTAQS--YSP 457 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~--~-----~~~I~~----~~l~s~~~g~------~e~~l~~~f~~A~~--~~P 457 (958)
+.+++|+||||||||++|+.+|..+.. + .+++.. .+++..+... ..+.+.+..+.|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 456999999999999999999998843 1 122221 1232221111 11233444555553 358
Q ss_pred eEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---
Q 002159 458 TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE--- 534 (958)
Q Consensus 458 ~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~--- 534 (958)
.+++|||++.-.. ....+++..+++.=.. .. .....-.|.-..........++.+|||+|..+
T Consensus 274 ~vliIDEINRani-----------~kiFGel~~lLE~~~r--g~-~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 274 YVFIIDEINRANL-----------SKVFGEVMMLMEHDKR--GE-NWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cEEEEehhhccCH-----------HHhhhhhhhhcccccc--cc-ccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 9999999985432 1122232222211000 00 00000000000011233478999999999887
Q ss_pred -CCChhhhccccEEEEcC
Q 002159 535 -GLPPTIRRCFSHEISMG 551 (958)
Q Consensus 535 -~Ld~alrrrf~~eIsig 551 (958)
.+|.+++|||.. +.+.
T Consensus 340 ~~lD~AlrRRF~f-i~i~ 356 (459)
T PRK11331 340 AVVDYALRRRFSF-IDIE 356 (459)
T ss_pred hhccHHHHhhhhe-EEec
Confidence 689999999954 4444
No 364
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.31 E-value=2.1e-06 Score=99.32 Aligned_cols=174 Identities=20% Similarity=0.333 Sum_probs=111.4
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchh----hh---HHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE----KN---VRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese----~~---vr~lf~~A~~~~P~IL 771 (958)
....||++|++||||.++|++|-... +.+|+.+++..+-.. .+|... .. -...|+.|.. ..|
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTL 239 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTL 239 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceE
Confidence 35679999999999999999998766 469999998554221 233211 11 1224555544 499
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----CCC---CCCcEEEEEecCCCCCCChhhcCcCCccc-----
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----LND---SSQDLFIIGASNRPDLIDPALLRPGRFDK----- 838 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~~~---~~~~v~VI~aTNrp~~ldpaLlrpgRfd~----- 838 (958)
|+|||..+. -.+...||.-|+. +.. -.-+|-||+|||+. |. ++..-|||-.
T Consensus 240 fLDEI~~mp-------------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyR 303 (464)
T COG2204 240 FLDEIGEMP-------------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--LE-EEVAAGRFREDLYYR 303 (464)
T ss_pred EeeccccCC-------------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--HH-HHHHcCCcHHHHHhh
Confidence 999998775 3456666666542 221 12368899999974 22 2233366654
Q ss_pred --eeeccCCCCHHHHHHHH---HHHHhhc-----cCCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHH
Q 002159 839 --LLYVGVNSDVSYRERVL---KALTRKF-----KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAK 899 (958)
Q Consensus 839 --~I~v~~ppd~~~r~~Il---~~~~~~~-----~~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A~~ 899 (958)
++.+.+||=.++++.|. +++++++ .-...++-+.++..+++.|-| ++|.|+|.+|+..+-.
T Consensus 304 LnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 304 LNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred hccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 34455678788888773 3334332 122455566666666678877 6999999988877643
No 365
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.31 E-value=4.9e-06 Score=99.73 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=98.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchh-------hhHHHHHHHHHhcCCcEEE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVIF 772 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese-------~~vr~lf~~A~~~~P~ILf 772 (958)
...|+|+|++||||+++|+++.... ..+|+.+++..+-.. .+|... +.-..+|+.| ....||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~ 303 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVL 303 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEE
Confidence 4569999999999999999997654 368999998765321 223211 1112345544 345899
Q ss_pred EcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC-----CC---CCCcEEEEEecCCCC-------CCChhhcCcCCcc
Q 002159 773 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL-----ND---SSQDLFIIGASNRPD-------LIDPALLRPGRFD 837 (958)
Q Consensus 773 iDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~-----~~---~~~~v~VI~aTNrp~-------~ldpaLlrpgRfd 837 (958)
|||||.+.+ .+...|+..++.- .. ...++-||+||+++- .+.+.|.. |+.
T Consensus 304 LdeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 304 LDEIGEMSP-------------RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred EeChhhCCH-------------HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 999999862 3444555555321 11 123577888887652 23344444 543
Q ss_pred ceeeccCCCCHHHHHHHH---HHHHh----hccC-CCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 838 KLLYVGVNSDVSYRERVL---KALTR----KFKL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 838 ~~I~v~~ppd~~~r~~Il---~~~~~----~~~~-~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
. +.+.+||=.+++..|. ..+++ +... ...+.-+.+.....+.|.| .+|++++.+|+..+
T Consensus 369 ~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 369 V-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred e-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 2 4555666556555542 33332 2211 1234434444433456766 68888888776653
No 366
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=96.42 Aligned_cols=154 Identities=13% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------Eec------Ccccc-------cchh---chHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE----------YSC------HNLMA-------SSER---KTSAALAQAF 449 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~----------I~~------~~l~s-------~~~g---~~e~~l~~~f 449 (958)
.+..+||+||+|+||||+|+++|+.+...... -.| ..+.. ...+ .....++.+.
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~ 116 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLR 116 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHH
Confidence 34458999999999999999999998652100 011 00000 0011 1134455544
Q ss_pred HHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEE
Q 002159 450 NTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVL 525 (958)
Q Consensus 450 ~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~Vi 525 (958)
+... .....|++|||+|.+.. .....+++-+.+. ...++
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a~naLLK~LEeP----------------------p~~tv 159 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLST---------------AAFNAFLKTLEEP----------------------PPHAI 159 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCH---------------HHHHHHHHHHhCC----------------------CCCeE
Confidence 4442 12346999999987753 1223333332211 34567
Q ss_pred EEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 526 LVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 526 VIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+|.+|+.+..+.+.+++|. ..+.+..+++.+-...++..+..... ..+ ...++.++..+.|
T Consensus 160 ~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi---~I~-~eal~~La~~s~G 220 (620)
T PRK14954 160 FIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGI---QID-ADALQLIARKAQG 220 (620)
T ss_pred EEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHhCC
Confidence 7777777888888888875 67889999888877766665543222 111 2334555555554
No 367
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.4e-05 Score=90.02 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=87.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHH
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+.+..+|++||+|+||+++|+++|+.+... +..+...+ ....-....+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCCCCHHHHHHHHH
Confidence 345579999999999999999999988432 22221110 000123455666555
Q ss_pred Hhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEE
Q 002159 451 TAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (958)
Q Consensus 451 ~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (958)
.+.. ....|++||++|.+.. .....+|+.+.+. ..++++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEP----------------------p~~~~f 139 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEP----------------------SGDTVL 139 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCC----------------------CCCeEE
Confidence 4432 2346889999998754 2234455544332 567889
Q ss_pred EEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHh
Q 002159 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL 565 (958)
Q Consensus 527 IaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~l 565 (958)
|.+|+.+..+.|.+++|. ..+.+..|+.++-.+.+...
T Consensus 140 iL~t~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 140 LLISHQPSRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred EEEECChhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 999999999999999986 56999999998877766644
No 368
>PRK09183 transposase/IS protein; Provisional
Probab=98.30 E-value=1.8e-06 Score=94.13 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=54.1
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-hhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
+..+.+++|+||||||||+|+.+++... |..+..++.+++...+... ....+..+|+.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 4567899999999999999999997653 6677777777776543221 223355566554 3466899999998764
No 369
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.29 E-value=3.4e-06 Score=95.89 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=105.1
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHH----cCCceeeeccchhhhc-------------cccchhhhHHHHHHHHHhcCC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATE----CSLNFLSVKGPELINM-------------YIGESEKNVRDIFQKARSARP 768 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~----~~~~~i~v~~~~l~~~-------------~~Gese~~vr~lf~~A~~~~P 768 (958)
+.+..||++|++||||+++|++|... ...+|+++++..+... |.| ....-..+|+.|...
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG-- 175 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG-- 175 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCCC--
Confidence 34678999999999999999999643 3578999999776542 333 333445567776544
Q ss_pred cEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----CC---CCCCcEEEEEecCCCCCCChhhcC-----cCC
Q 002159 769 CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----LN---DSSQDLFIIGASNRPDLIDPALLR-----PGR 835 (958)
Q Consensus 769 ~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~~---~~~~~v~VI~aTNrp~~ldpaLlr-----pgR 835 (958)
+||+|||..+.+ .....|+..||. +. ....+|.+|+|||- .++.+++. .-|
T Consensus 176 -tLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl 239 (403)
T COG1221 176 -TLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRL 239 (403)
T ss_pred -EEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhh
Confidence 999999998873 234456666654 22 12346888888874 33333332 004
Q ss_pred ccceeeccCCCCHHHHHHHH---HHH----HhhccCCCCcCHHHHHhhC-CCCCCH--HHHHHHHHHHHHHHH
Q 002159 836 FDKLLYVGVNSDVSYRERVL---KAL----TRKFKLLEDVSLYSIAKKC-PPNFTG--ADMYALCADAWFHAA 898 (958)
Q Consensus 836 fd~~I~v~~ppd~~~r~~Il---~~~----~~~~~~~~d~~l~~la~~~-t~g~sG--aDi~~l~~~A~~~A~ 898 (958)
+...|.+ ||=.+++.+|. +.+ .++......++..+..+.. ...|.| ++|+++++.++..+-
T Consensus 240 ~~~~I~L--PpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 240 NILTITL--PPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred cCceecC--CChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 4444444 56666666664 233 3333333333332222221 123455 799999999888874
No 370
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.29 E-value=1.1e-05 Score=88.18 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=104.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC---------Cceeeeccchh------hh--------cc-ccc-hhhhHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS---------LNFLSVKGPEL------IN--------MY-IGE-SEKNVRDIFQK 762 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~---------~~~i~v~~~~l------~~--------~~-~Ge-se~~vr~lf~~ 762 (958)
..++||+|++|.|||++++..+.... .+++.+.++.- +. .| ... ..+.-.++...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999986542 35666655331 11 01 111 11223334555
Q ss_pred HHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC--CCChhhcCcCCcccee
Q 002159 763 ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLL 840 (958)
Q Consensus 763 A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~--~ldpaLlrpgRfd~~I 840 (958)
.+..++.+|+|||++.+..... ...+.+-.+|+.|-.- -.-.++.+||-.--. .-|+.|.+ ||+..
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~-------~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~~A~~al~~D~QLa~--RF~~~- 208 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSY-------RKQREFLNALKFLGNE--LQIPIVGVGTREAYRALRTDPQLAS--RFEPF- 208 (302)
T ss_pred HHHcCCcEEEeechHHHhcccH-------HHHHHHHHHHHHHhhc--cCCCeEEeccHHHHHHhccCHHHHh--ccCCc-
Confidence 6677888999999999873221 1122222333333211 112344455432112 34788888 99754
Q ss_pred eccCCCCHHHHHHHHHHHHhhccCCCCcC--H----HHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 002159 841 YVGVNSDVSYRERVLKALTRKFKLLEDVS--L----YSIAKKCPPNFTGADMYALCADAWFHAAKR 900 (958)
Q Consensus 841 ~v~~ppd~~~r~~Il~~~~~~~~~~~d~~--l----~~la~~~t~g~sGaDi~~l~~~A~~~A~~r 900 (958)
.+|.=...++...++..+.+.+++...-+ - ..|... ++|.+| ++..+++.|+..|++.
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~-s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHER-SEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-cCCchH-HHHHHHHHHHHHHHhc
Confidence 44421223445667777777766543322 2 344455 577776 7889999999999865
No 371
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.29 E-value=8.3e-06 Score=91.60 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=82.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC------------------------CcEEEEecCcccccchhchHHHHHHHHHHhhc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG------------------------IHVVEYSCHNLMASSERKTSAALAQAFNTAQS 454 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg------------------------~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~ 454 (958)
.+||+||||+||||++.++|+++. ..+++++.++..... .....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 589999999999999999999997 577888776533211 123344444443332
Q ss_pred ----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 455 ----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 455 ----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
....+++|||+|.+.. .....+...++. ......+|.+|
T Consensus 104 ~~~~~~~kviiidead~mt~----------------~A~nallk~lEe---------------------p~~~~~~il~~ 146 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE----------------DAANALLKTLEE---------------------PPKNTRFILIT 146 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH----------------HHHHHHHHHhcc---------------------CCCCeEEEEEc
Confidence 2357999999998865 112222222221 16678899999
Q ss_pred CCCCCCChhhhccccEEEEcCCCCHHHHHHHH
Q 002159 531 DSSEGLPPTIRRCFSHEISMGPLTEQQRVEML 562 (958)
Q Consensus 531 n~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il 562 (958)
|.+..+-+.+++|. ..+.+.+|+...+....
T Consensus 147 n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 147 NDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred CChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 99999999999874 56777755444444433
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=3.6e-06 Score=95.04 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=87.5
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCc----------------eeeeccchhhhcccc-----chhhhHHHHHHHH-
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLN----------------FLSVKGPELINMYIG-----ESEKNVRDIFQKA- 763 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~----------------~i~v~~~~l~~~~~G-----ese~~vr~lf~~A- 763 (958)
+.+..+||+||.|+||+++|.++|..+-.. +-.-+-|++.--... -+-..+|++-+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345679999999999999999999876221 000011222111100 0123455555444
Q ss_pred ---HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCcccee
Q 002159 764 ---RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 840 (958)
Q Consensus 764 ---~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I 840 (958)
......|++||++|.+. ....|.||+.|+. ...++++|.+|++|+.|-|.+++ |+. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT-------------DAAANALLKTLEE---PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC-------------HHHHHHHHHHhcC---CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 34455799999999885 4567899999985 35678888889999999999999 997 46
Q ss_pred eccCCCCHHHHHHHHH
Q 002159 841 YVGVNSDVSYRERVLK 856 (958)
Q Consensus 841 ~v~~ppd~~~r~~Il~ 856 (958)
.++. |+.+.-...|.
T Consensus 163 ~~~~-~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAP-PPEQYALTWLS 177 (334)
T ss_pred cCCC-CCHHHHHHHHH
Confidence 8875 55555555554
No 373
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.29 E-value=1.1e-05 Score=95.30 Aligned_cols=145 Identities=19% Similarity=0.341 Sum_probs=84.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh--------cCCCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ--------SYSPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~--------~~~P~IL~iDeid~L~ 469 (958)
+-+||+||||.||||||+.||.+.|..+++||.++ ..+...++.....|. ...|..+++||||.-.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASD------eRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD------ERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccc------cccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 45799999999999999999999999999999987 223333333333322 2579999999998422
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchh--hhhhhhcCcEEEEEecCCCCCCChhhhc--ccc
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK--EIEKICRQQVLLVAAADSSEGLPPTIRR--CFS 545 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~--~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~ 545 (958)
+ .....+.++++.-..+... ..++-.-.. ........+ +||.||.. .-|+||. .|.
T Consensus 401 ~------------~~Vdvilslv~a~~k~~~G----kq~~~~~~rkkkr~~~L~RP--IICICNdL--YaPaLR~Lr~~A 460 (877)
T KOG1969|consen 401 R------------AAVDVILSLVKATNKQATG----KQAKKDKKRKKKRSKLLTRP--IICICNDL--YAPALRPLRPFA 460 (877)
T ss_pred H------------HHHHHHHHHHHhhcchhhc----CcccchhhhhhhccccccCC--EEEEecCc--cchhhhhcccce
Confidence 1 1112222322211111000 000000000 000111223 66777764 3567764 577
Q ss_pred EEEEcCCCCHHHHHHHHHHhccC
Q 002159 546 HEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 546 ~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
..+.+..|.+...++=|+....+
T Consensus 461 ~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred EEEEecCCChhHHHHHHHHHHhh
Confidence 88899999887766666655533
No 374
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.28 E-value=2.5e-06 Score=102.89 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=96.7
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchhhh-------HHHHHHHHHhcCCcE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEKN-------VRDIFQKARSARPCV 770 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese~~-------vr~lf~~A~~~~P~I 770 (958)
.....|+|+|++||||+++|++|.... +.+|+.+++..+... .+|..... ....|..| ...+
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~Gt 293 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGT 293 (534)
T ss_pred CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCe
Confidence 345679999999999999999999875 568999998765322 12221100 01112322 3469
Q ss_pred EEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-----C---CCCcEEEEEecCCCCCCChhhcCcCCccc----
Q 002159 771 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN-----D---SSQDLFIIGASNRPDLIDPALLRPGRFDK---- 838 (958)
Q Consensus 771 LfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~-----~---~~~~v~VI~aTNrp~~ldpaLlrpgRfd~---- 838 (958)
|||||||.+.. .+...|+..++.-. . ...++-+|+||+..- . .+...|+|..
T Consensus 294 L~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l--~-~~~~~~~f~~~L~~ 357 (534)
T TIGR01817 294 LFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDL--E-EAVAKGEFRADLYY 357 (534)
T ss_pred EEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCH--H-HHHHcCCCCHHHHH
Confidence 99999999862 34556666554311 0 012478888887642 1 1223345532
Q ss_pred ---eeeccCCCCHHHHHHH---HHHHHhhc----cCCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 839 ---LLYVGVNSDVSYRERV---LKALTRKF----KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 839 ---~I~v~~ppd~~~r~~I---l~~~~~~~----~~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
.+.+.+||=.+++.+| ++.+++.. .....++-+.+.....+.|-| .+|++++++|+..+
T Consensus 358 rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 358 RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2233344544444433 44444432 111223323232222345655 78999998887654
No 375
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.28 E-value=3.9e-06 Score=99.96 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=100.5
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHH-----------cCCceeeeccchhhh-----ccccchhh--------hHHHHHHH
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATE-----------CSLNFLSVKGPELIN-----MYIGESEK--------NVRDIFQK 762 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~-----------~~~~~i~v~~~~l~~-----~~~Gese~--------~vr~lf~~ 762 (958)
....|+|+|++||||+++|++|... .+.+|+.+++..+-. ..+|..+. .-..+|+.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~ 320 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 320 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc
Confidence 3567999999999999999999876 457899999876532 22332111 11234555
Q ss_pred HHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCCCCChhhcCcC
Q 002159 763 ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPDLIDPALLRPG 834 (958)
Q Consensus 763 A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~~ldpaLlrpg 834 (958)
|. ...||||||+.|. ..+...|+..|+.-. ...-++-||+|||+.- . .+...|
T Consensus 321 A~---gGTLfLdeI~~Lp-------------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g 381 (538)
T PRK15424 321 AH---GGTLFLDEIGEMP-------------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQG 381 (538)
T ss_pred cC---CCEEEEcChHhCC-------------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH--H-HHHhcc
Confidence 43 3599999999886 234556666554211 1123568899998642 1 333445
Q ss_pred Cccc-------eeeccCCCCHHHHHHH---HHHHHhhcc--CCCCcCHHHH-------HhhCCCCCCH--HHHHHHHHHH
Q 002159 835 RFDK-------LLYVGVNSDVSYRERV---LKALTRKFK--LLEDVSLYSI-------AKKCPPNFTG--ADMYALCADA 893 (958)
Q Consensus 835 Rfd~-------~I~v~~ppd~~~r~~I---l~~~~~~~~--~~~d~~l~~l-------a~~~t~g~sG--aDi~~l~~~A 893 (958)
+|.. .+.+.+||=.+++.+| .+.++++.. ....+.-+.+ ...+.+.|-| .+|++++.++
T Consensus 382 ~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~ 461 (538)
T PRK15424 382 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERL 461 (538)
T ss_pred cchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 6653 2445566766666655 344444320 1111211111 1122356666 7999999988
Q ss_pred HHH
Q 002159 894 WFH 896 (958)
Q Consensus 894 ~~~ 896 (958)
+..
T Consensus 462 ~i~ 464 (538)
T PRK15424 462 ALF 464 (538)
T ss_pred HHh
Confidence 764
No 376
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.28 E-value=3.5e-06 Score=103.85 Aligned_cols=172 Identities=18% Similarity=0.278 Sum_probs=97.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhh-----hccccch----hhhHHHHHHHHHhcCCcEEEEc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI-----NMYIGES----EKNVRDIFQKARSARPCVIFFD 774 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~-----~~~~Ges----e~~vr~lf~~A~~~~P~ILfiD 774 (958)
....|+|+|++||||+++|++|.... +.+|+.+++..+- +.++|.. .......|..| ....||||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ld 423 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLE 423 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEc
Confidence 35669999999999999999998865 4689999986542 2334421 11111123333 45699999
Q ss_pred ccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-----C---CCCcEEEEEecCCCCCCChhhcCcCCccc-------e
Q 002159 775 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN-----D---SSQDLFIIGASNRPDLIDPALLRPGRFDK-------L 839 (958)
Q Consensus 775 EiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~-----~---~~~~v~VI~aTNrp~~ldpaLlrpgRfd~-------~ 839 (958)
||+.+. ..+...|+..|+.-. . ..-++-||+|||+.- ..+...|+|.. .
T Consensus 424 ei~~l~-------------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~ 487 (638)
T PRK11388 424 KVEYLS-------------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHA 487 (638)
T ss_pred ChhhCC-------------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhce
Confidence 999886 234455555554211 0 011577999988652 23334455532 2
Q ss_pred eeccCCCCHHHHHHH---HHHHHhhc----cCCCCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 840 LYVGVNSDVSYRERV---LKALTRKF----KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 840 I~v~~ppd~~~r~~I---l~~~~~~~----~~~~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
+.+.+||=.+++.+| ++.+++.+ .....++-+.+.......|-| ++|+++++.|+..+
T Consensus 488 ~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 488 FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred eEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 344555655554544 34444322 111123333333322245555 78888888877543
No 377
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.28 E-value=3.8e-07 Score=87.27 Aligned_cols=117 Identities=22% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-----ccchhchHHHHHHHHHHhh-cCCCeEEeecchhhhhhcc
Q 002159 400 VLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH-NLM-----ASSERKTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~-~l~-----s~~~g~~e~~l~~~f~~A~-~~~P~IL~iDeid~L~~~~ 472 (958)
|||.|+||+||||+++++|+.+|..+..|.+. +++ +...-.... ..|+... --...|+++|||....++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrappk- 77 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPPK- 77 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-HH-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCHH-
Confidence 89999999999999999999999999988874 332 111000000 0000000 001258999999876652
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhhcccc
Q 002159 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRRCFS 545 (958)
Q Consensus 473 s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alrrrf~ 545 (958)
..+.+.+++.+-.- ..+|.. .....+++||||-|..+ .||.+++.||.
T Consensus 78 -----------tQsAlLeam~Er~V--------t~~g~~------~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 -----------TQSALLEAMEERQV--------TIDGQT------YPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -----------HHHHHHHHHHHSEE--------EETTEE------EE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -----------HHHHHHHHHHcCeE--------EeCCEE------EECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 22333333322110 011111 22367899999999766 67888888884
No 378
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=1.7e-06 Score=94.77 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=67.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccc----cchhhhHHHHHHHHHhcCCcEEEEcccccc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYI----GESEKNVRDIFQKARSARPCVIFFDELDSL 779 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~----Gese~~vr~lf~~A~~~~P~ILfiDEiD~l 779 (958)
.+.+++|+|++|||||+||.++++++ +.+++.++.++++..+. +.+.....++++.... ..+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCC
Confidence 34579999999999999999999986 67888888888766532 2222223344444433 359999998542
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC-C----CChhhcC
Q 002159 780 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-L----IDPALLR 832 (958)
Q Consensus 780 ~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~-~----ldpaLlr 832 (958)
.. . +....+|...++.... .+..+|.|||.+. . ++..+..
T Consensus 191 ~~--------t---~~~~~~l~~iin~r~~--~~~~~IiTsN~~~~eL~~~~~~ri~s 235 (268)
T PRK08116 191 RD--------T---EWAREKVYNIIDSRYR--KGLPTIVTTNLSLEELKNQYGKRIYD 235 (268)
T ss_pred CC--------C---HHHHHHHHHHHHHHHH--CCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 21 1 2233344444443321 2234777888752 2 3555554
No 379
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.26 E-value=2.7e-06 Score=99.55 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=98.2
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--EEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV--EYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~--~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
.-.|.+..|..+.|+|++||||||++|++++-+.+.-+ .+++.+ ..-. ...++. ......++|.|-..
T Consensus 309 ~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~----~~~~~~-----~r~~~QmvFQdp~~ 378 (539)
T COG1123 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLT----GGELRR-----LRRRIQMVFQDPYS 378 (539)
T ss_pred eeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccc----cchhhh-----hhhheEEEEeCccc
Confidence 33455677788999999999999999999998877554 344443 1111 111111 11234678888777
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
+|.+..+ ....+.+-+...... .+-.......... ..-++++.+..|+.+
T Consensus 379 SLnPr~t----------V~~~i~epL~~~~~~---------~~~~~~~rv~~ll-----------~~VgL~~~~l~ryP~ 428 (539)
T COG1123 379 SLNPRMT----------VGDILAEPLRIHGGG---------SGAERRARVAELL-----------ELVGLPPEFLDRYPH 428 (539)
T ss_pred ccCcccc----------HHHHHHhHHhhhccc---------chHHHHHHHHHHH-----------HHcCCCHHHHhcCch
Confidence 7766221 111122211110000 0000000011111 223567778899999
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhc---CCCChhhHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQT---SGFMPRDLHALVA 602 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t---~Gfv~~DL~~Lv~ 602 (958)
++|+| ++||..|++++..++..+..|+.. . ..+.++-++. -=|++||+...-.
T Consensus 429 elSGG---QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 429 ELSGG---QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred hcCcc---hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 99999 999999999999998877555433 1 2233333332 2299999987643
No 380
>PRK06526 transposase; Provisional
Probab=98.25 E-value=2.4e-06 Score=92.85 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=64.4
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-hhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
+..+.+++|+||||||||+||.+|+.++ |..+..+..++++...... ........+... ..+.+|+|||++.+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 3457789999999999999999998875 5666666666665543211 112223333332 346799999998775
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 781 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
..+ ....++.+++..... . . -+|.|||.|
T Consensus 173 ~~~--------~~~~~L~~li~~r~~---~--~-s~IitSn~~ 201 (254)
T PRK06526 173 FEP--------EAANLFFQLVSSRYE---R--A-SLIVTSNKP 201 (254)
T ss_pred CCH--------HHHHHHHHHHHHHHh---c--C-CEEEEcCCC
Confidence 321 123455555554322 1 1 267788876
No 381
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.24 E-value=5.9e-06 Score=98.51 Aligned_cols=197 Identities=16% Similarity=0.233 Sum_probs=108.9
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh--
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-- 746 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-- 746 (958)
..++++.|.....+.+.+.+. .-......|+|+|++||||+++|++|.... +.+|+.+++..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~----------~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVR----------LYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHH----------HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 346667776554444433321 111235679999999999999999998754 57899999865532
Q ss_pred ---ccccchhh--------hHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-------
Q 002159 747 ---MYIGESEK--------NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN------- 808 (958)
Q Consensus 747 ---~~~Gese~--------~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~------- 808 (958)
..+|..+. .-..+|+.|. ...||||||+.|. ..+...|+..|+.-.
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp-------------~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP-------------LPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC-------------HHHHHHHHHHHhcCcEEecCCC
Confidence 22332111 1223455443 3599999999886 234555555554211
Q ss_pred -CCCCcEEEEEecCCCCCCChhhcCcCCccc-------eeeccCCCCHHHHHHHH---HHHHhhccCC--CCcCHHHHHh
Q 002159 809 -DSSQDLFIIGASNRPDLIDPALLRPGRFDK-------LLYVGVNSDVSYRERVL---KALTRKFKLL--EDVSLYSIAK 875 (958)
Q Consensus 809 -~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~-------~I~v~~ppd~~~r~~Il---~~~~~~~~~~--~d~~l~~la~ 875 (958)
...-++-+|+|||++- ..+...|+|.. .+.+.+||=.+++.+|. ..+++..... ..++-+.+..
T Consensus 343 ~~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred ceeeecceEEeccCCCH---HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1112467888888753 12222334432 23455567666666553 3444432110 0122122111
Q ss_pred -------hCCCCCCH--HHHHHHHHHHHHHH
Q 002159 876 -------KCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 876 -------~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
.+...|-| .+|++++.+|+..+
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 11356766 68888888877653
No 382
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.24 E-value=9.2e-06 Score=94.35 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=71.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-----cccccchhchHHHH--HHHHHHhh-cC--CCeEEeecc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCH-----NLMASSERKTSAAL--AQAFNTAQ-SY--SPTILLLRD 464 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~--~~~~I~~~-----~l~s~~~g~~e~~l--~~~f~~A~-~~--~P~IL~iDe 464 (958)
+.+|||.||||||||++|++++...+. .|..+.+. ++++.. +.... ...|.... +. ...++|+||
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEeecc
Confidence 345999999999999999999998753 33333332 222211 00000 11122111 10 224899999
Q ss_pred hhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhh--hhcCcEEEEEecCCCCCCC-----
Q 002159 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK--ICRQQVLLVAAADSSEGLP----- 537 (958)
Q Consensus 465 id~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~--~~~~~ViVIaaTn~~~~Ld----- 537 (958)
|..+.++ ....+..+++ +.. ... .+. ....+++++ ||| .+|
T Consensus 116 I~rasp~------------~QsaLLeam~---Er~------------~t~-g~~~~~lp~rfiv~-ATN---~LPE~g~~ 163 (498)
T PRK13531 116 IWKAGPA------------ILNTLLTAIN---ERR------------FRN-GAHEEKIPMRLLVT-ASN---ELPEADSS 163 (498)
T ss_pred cccCCHH------------HHHHHHHHHH---hCe------------Eec-CCeEEeCCCcEEEE-ECC---CCcccCCc
Confidence 9765441 2222333221 110 000 111 112334444 445 344
Q ss_pred -hhhhccccEEEEcCCCCH-HHHHHHHHHh
Q 002159 538 -PTIRRCFSHEISMGPLTE-QQRVEMLSQL 565 (958)
Q Consensus 538 -~alrrrf~~eIsig~Pde-~qR~~Il~~l 565 (958)
+++..||...+.+|+|+. +.-.+|+...
T Consensus 164 leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 164 LEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 488889999999999974 5557777653
No 383
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.24 E-value=1.4e-05 Score=90.00 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=39.0
Q ss_pred cCcEEEEEecCCCC-CCChhhhccccEEEEcCCCCH-HHHHHHHHHhc
Q 002159 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLTE-QQRVEMLSQLL 566 (958)
Q Consensus 521 ~~~ViVIaaTn~~~-~Ld~alrrrf~~eIsig~Pde-~qR~~Il~~ll 566 (958)
..++++|+++|..+ .+++++..||...+.++.|.. ++|.+|++...
T Consensus 169 p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 169 PARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 56789999998654 589999999999999998877 89999998754
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.23 E-value=1.6e-06 Score=91.44 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~ 577 (958)
++.+....++..++|+| |+||++|++++..++..+..|+.
T Consensus 130 gl~~~~~~~~p~eLSGG---qqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 130 GLEDRLLKKKPSELSGG---QQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred CChhhhccCCchhcCHH---HHHHHHHHHHHhcCCCeEEeeCc
Confidence 44444455778999999 99999999999998887755544
No 385
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.4e-06 Score=94.17 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=62.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-ccchhch-HHHHHHHHHHhh----cCCCeEEeecchhhhhhc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM-ASSERKT-SAALAQAFNTAQ----SYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~-s~~~g~~-e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~ 471 (958)
.+|||.||.|+|||.|++.+|.-++.+|...+|..|. +.|.|+. +.-+...++.|. .++-.|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999999876 4566765 556677777765 346789999999999853
No 386
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.22 E-value=1.1e-06 Score=88.61 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 380 ASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 380 ~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
...++..+.+++| +.|+||+|+||||++|.+.++..+.-+.|.
T Consensus 18 L~~vs~~i~~Gef-------~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 18 LRDVSFHIPKGEF-------VFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred hhCceEeecCceE-------EEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 3456677777777 999999999999999999999987765553
No 387
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.22 E-value=1.4e-06 Score=95.67 Aligned_cols=145 Identities=20% Similarity=0.352 Sum_probs=86.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcccccchhchHHHHHHHHHHhh-----------cCCCeEEee
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMASSERKTSAALAQAFNTAQ-----------SYSPTILLL 462 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~---~~~I~~~~l~s~~~g~~e~~l~~~f~~A~-----------~~~P~IL~i 462 (958)
+..+||+||+|||||++++..-..+... ...++++. ..+...++...+... ....+|+|+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~------~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA------QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T------THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC------CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 4569999999999999999877666543 23344432 223333433332211 123479999
Q ss_pred cchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChh
Q 002159 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPT 539 (958)
Q Consensus 463 Deid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~a 539 (958)
|++..-.+ +..+.. ...++|+++++ .+||.-........-..+.+|||++... .+++.
T Consensus 107 DDlN~p~~---------d~ygtq-~~iElLRQ~i~---------~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R 167 (272)
T PF12775_consen 107 DDLNMPQP---------DKYGTQ-PPIELLRQLID---------YGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPR 167 (272)
T ss_dssp ETTT-S------------TTS---HHHHHHHHHHH---------CSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHH
T ss_pred cccCCCCC---------CCCCCc-CHHHHHHHHHH---------hcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChH
Confidence 99975443 223333 34578888865 3566544333444456788999987543 25666
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhcc
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
+.|.| ..+.++.|+.+....|+..++.
T Consensus 168 ~~r~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 168 FLRHF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHTTE-EEEE----TCCHHHHHHHHHHH
T ss_pred Hhhhe-EEEEecCCChHHHHHHHHHHHh
Confidence 66666 6899999999999988887764
No 388
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=4.8e-07 Score=103.17 Aligned_cols=38 Identities=34% Similarity=0.386 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..+.|.||||||||||+|++|+...+.-++|.
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~ 62 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 33444555999999999999999999998877766654
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.21 E-value=4.7e-06 Score=96.97 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=32.5
Q ss_pred cccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 390 SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 390 ~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
-.|.+.+|.-..|.|.||+|||||+|.+++...++-++|..
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~ 67 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI 67 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEE
Confidence 33444555559999999999999999999998887766643
No 390
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.20 E-value=1.7e-06 Score=98.64 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=114.9
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM 747 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~ 747 (958)
......|+|.......+.+.+. .-......|||.|.+||||..+||+|-... ..+|+.++++.+-..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~----------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIE----------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHH----------HHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 3444556665555444444331 122446789999999999999999998776 578999998654321
Q ss_pred -----cccc----hhhh---HHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhc-----CCCCC
Q 002159 748 -----YIGE----SEKN---VRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID-----GLNDS 810 (958)
Q Consensus 748 -----~~Ge----se~~---vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ld-----g~~~~ 810 (958)
.+|. .... -+.-|+.|.. .-||+|||..|. -.+...||.-|+ .+...
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP-------------L~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP-------------LALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC-------------HHHHHHHHHHHhhcceeecCCC
Confidence 2221 1111 1222444433 499999997665 245556665543 33221
Q ss_pred ---CCcEEEEEecCCCCCCChhhcCcCCccceee-------ccCCCCHHHHHHHH---HHHHhhc----cC-CCCcCHHH
Q 002159 811 ---SQDLFIIGASNRPDLIDPALLRPGRFDKLLY-------VGVNSDVSYRERVL---KALTRKF----KL-LEDVSLYS 872 (958)
Q Consensus 811 ---~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~-------v~~ppd~~~r~~Il---~~~~~~~----~~-~~d~~l~~ 872 (958)
.-+|-||+|||| .|..++ +-|+|-.-+| +.+||=.++...|. +++++++ .. ....+-+.
T Consensus 353 r~ikVDVRiIAATNR--DL~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNR--DLEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccch--hHHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 125899999998 333344 4477764443 33567666666553 3333332 22 11112122
Q ss_pred HHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 873 IAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 873 la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
+-.-...+|-| ++|++++.+|+..|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 22211246766 79999999999988
No 391
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2e-05 Score=95.74 Aligned_cols=148 Identities=14% Similarity=0.235 Sum_probs=93.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcccccchhchHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI-------------------------HVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~-------------------------~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
.+..+|||||+|+||||+++++|+.+.. ++.++++.+ ......++.+..
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~ 111 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIE 111 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHH
Confidence 3455899999999999999999998852 223333221 122445666665
Q ss_pred HhhcC----CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEE
Q 002159 451 TAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (958)
Q Consensus 451 ~A~~~----~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (958)
.+... ...|++|||+|.+.. .....+++.+ +.. ...+++
T Consensus 112 ~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~L-Eep---------------------p~~tif 154 (614)
T PRK14971 112 QVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKTL-EEP---------------------PSYAIF 154 (614)
T ss_pred HHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHHH-hCC---------------------CCCeEE
Confidence 55421 235899999987743 1223333222 211 455677
Q ss_pred EEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 527 IaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
|.+|+....+.+.+++|. ..+.+..++..+-...++..+..... ..+ ...+..++..+.|
T Consensus 155 IL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi---~i~-~~al~~La~~s~g 214 (614)
T PRK14971 155 ILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGI---TAE-PEALNVIAQKADG 214 (614)
T ss_pred EEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 777777888999999885 56899999898888777766654432 112 2335666666544
No 392
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=1.5e-05 Score=96.50 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-E---ecCcccccc------------
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE-Y---SCHNLMASS------------ 437 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~-I---~~~~l~s~~------------ 437 (958)
+.++.+..++... .+....+..++|+|||||||||+++++|++++..+.+ + +|......+
T Consensus 91 ~ki~~l~~~l~~~----~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~ 166 (637)
T TIGR00602 91 KKIEEVETWLKAQ----VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSN 166 (637)
T ss_pred HHHHHHHHHHHhc----ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhcccc
Confidence 3444555554433 2223445569999999999999999999999876544 1 111100000
Q ss_pred hhchHHHHHHHHHHhh----------cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHH-HhcCCCCCccccc
Q 002159 438 ERKTSAALAQAFNTAQ----------SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIR-EFTEPSAEDEDEE 506 (958)
Q Consensus 438 ~g~~e~~l~~~f~~A~----------~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~-~l~~~l~~~~~~~ 506 (958)
.......+...+..+. .....||||||++.+... ....+..+|+ .+.+
T Consensus 167 ~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r------------~~~~lq~lLr~~~~e--------- 225 (637)
T TIGR00602 167 FQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR------------DTRALHEILRWKYVS--------- 225 (637)
T ss_pred ccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh------------hHHHHHHHHHHHhhc---------
Confidence 0112233444444443 124679999999876541 1123344443 2211
Q ss_pred cCCCCchhhhhhhhcCcEEEEEecC-CCC--------CC------Chhhhc-cccEEEEcCCCCHHHHHHHHHHhccCCc
Q 002159 507 SHGYFPVKEIEKICRQQVLLVAAAD-SSE--------GL------PPTIRR-CFSHEISMGPLTEQQRVEMLSQLLQPVS 570 (958)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIaaTn-~~~--------~L------d~alrr-rf~~eIsig~Pde~qR~~Il~~ll~~~~ 570 (958)
.+.+.+|++++ .+. .+ .+++++ .-...|.+.+.+..+....++..+....
T Consensus 226 --------------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 226 --------------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred --------------CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 22233333333 221 12 367774 3346899999999987777766664321
Q ss_pred ccC-CC--CCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 571 ELT-SD--TGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 571 ~l~-~D--~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
... .+ +.....++.++....| |++..+.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn 322 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGCSG----DIRSAIN 322 (637)
T ss_pred hccccccccCCHHHHHHHHHhCCC----hHHHHHH
Confidence 111 11 2234567777775554 6655543
No 393
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.18 E-value=6.1e-06 Score=88.96 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=67.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc---hhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE---SEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge---se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
.+++|+|+||||||+|+.+||.++ +..++.+..+++...+.+. ......++++... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 6778888888887643321 1223344555543 467999999987641
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
......++.+++..--. .+.-+|.|||..
T Consensus 177 -------s~~~~~~l~~Ii~~Ry~-----~~~~tiitSNl~ 205 (244)
T PRK07952 177 -------SRYEKVIINQIVDRRSS-----SKRPTGMLTNSN 205 (244)
T ss_pred -------CHHHHHHHHHHHHHHHh-----CCCCEEEeCCCC
Confidence 12334567777665221 123466688865
No 394
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.18 E-value=1.7e-06 Score=91.34 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..+..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 33445555999999999999999999998876655553
No 395
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.16 E-value=1e-06 Score=99.66 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=44.6
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhcCC----CChhhHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTSG----FMPRDLHA 599 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t~G----fv~~DL~~ 599 (958)
++++....++.+++|+| ++||+.|+++++.++..+..|+.. . ..+.++.++ .| |+.||+..
T Consensus 149 gl~~~~~~~~p~~LSgG---~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~ 224 (331)
T PRK15079 149 GLLPNLINRYPHEFSGG---QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAV 224 (331)
T ss_pred CCChHHhcCCcccCCHH---HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 34445667788999999 999999999999998887555433 2 223333332 13 88999986
Q ss_pred HHH
Q 002159 600 LVA 602 (958)
Q Consensus 600 Lv~ 602 (958)
+..
T Consensus 225 ~~~ 227 (331)
T PRK15079 225 VKH 227 (331)
T ss_pred HHH
Confidence 643
No 396
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.16 E-value=4.1e-06 Score=86.72 Aligned_cols=141 Identities=22% Similarity=0.312 Sum_probs=78.0
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-C----Cceeeeccchhh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-S----LNFLSVKGPELI 745 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-~----~~~i~v~~~~l~ 745 (958)
+..+.||.|-++....+.-.. ..| .-.+++|.|||||||||-+.++|.++ | -.++.+++++-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via----------~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIA----------KEG--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHH----------HcC--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 345678888877665543211 112 13479999999999999999999987 2 235566654432
Q ss_pred hccccchhhhHHHHHHHHHhcC----CcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC
Q 002159 746 NMYIGESEKNVRDIFQKARSAR----PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 821 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~----P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN 821 (958)
+- ..-++--+.|..-+-.- -.|+++||+|++... ...+++|. |+-. + +..-+..|+|
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g------AQQAlRRt-------MEiy--S-~ttRFalaCN 151 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG------AQQALRRT-------MEIY--S-NTTRFALACN 151 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH------HHHHHHHH-------HHHH--c-ccchhhhhhc
Confidence 11 01122233454433222 259999999998621 11223333 3322 1 2233555778
Q ss_pred CCCCCChhhcCcCCccceeeccC
Q 002159 822 RPDLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 822 rp~~ldpaLlrpgRfd~~I~v~~ 844 (958)
..+.|=+.+.+ |+...=|-.+
T Consensus 152 ~s~KIiEPIQS--RCAiLRyskl 172 (333)
T KOG0991|consen 152 QSEKIIEPIQS--RCAILRYSKL 172 (333)
T ss_pred chhhhhhhHHh--hhHhhhhccc
Confidence 77766554444 5543334444
No 397
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=9.1e-06 Score=90.92 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=84.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCce-------------eeeccchhhhc--c---ccc------hhhhHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNF-------------LSVKGPELINM--Y---IGE------SEKNVRDIFQKA 763 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~-------------i~v~~~~l~~~--~---~Ge------se~~vr~lf~~A 763 (958)
+..+||+||+|+||+++|.++|..+-..- ..-+-|++.-- . .|. .-..+|++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 55799999999999999999998653210 00001122110 0 011 123466666554
Q ss_pred Hh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccce
Q 002159 764 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 839 (958)
Q Consensus 764 ~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~ 839 (958)
.. ..-.|++||++|.+. ....|.||+.|+.- ..++++|.+|+.++.|-|.+++ |+. .
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~~~fiL~~~~~~~lLpTIrS--RCq-~ 166 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLEEP---SPGRYLWLISAQPARLPATIRS--RCQ-R 166 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhhCC---CCCCeEEEEECChhhCchHHHh--hhe-E
Confidence 33 234699999999885 35678999988853 4567777788999999999999 996 5
Q ss_pred eeccCCCCHHHHHHHHH
Q 002159 840 LYVGVNSDVSYRERVLK 856 (958)
Q Consensus 840 I~v~~ppd~~~r~~Il~ 856 (958)
+.|+. |+.+.-..+|.
T Consensus 167 i~~~~-~~~~~~~~~L~ 182 (319)
T PRK08769 167 LEFKL-PPAHEALAWLL 182 (319)
T ss_pred eeCCC-cCHHHHHHHHH
Confidence 56774 55555555554
No 398
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=1.3e-05 Score=89.66 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=88.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCce---------------eeeccchhhhccc---cc--hhhhHHHHHHHHH-
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNF---------------LSVKGPELINMYI---GE--SEKNVRDIFQKAR- 764 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~---------------i~v~~~~l~~~~~---Ge--se~~vr~lf~~A~- 764 (958)
+-+..+||+||.|+||+++|+++|..+-..- ..-+-|++.--.. |. +-..+|++-+.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 3356799999999999999999998662110 0001122211111 11 1234566555443
Q ss_pred ---hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceee
Q 002159 765 ---SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 841 (958)
Q Consensus 765 ---~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~ 841 (958)
.....|++||++|.+. ....|.||+.|+.- ..++++|..|+.|+.|-|.+++ |+. .+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN-------------ESASNALLKTLEEP---APNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred CcccCCceEEEecchhhhC-------------HHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 2345799999999885 35678999998853 5678888888999999999998 996 667
Q ss_pred ccCCCCHHHHHHHHHH
Q 002159 842 VGVNSDVSYRERVLKA 857 (958)
Q Consensus 842 v~~ppd~~~r~~Il~~ 857 (958)
++. |+.+.-.+++..
T Consensus 164 ~~~-~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTP-PSTAQAMQWLKG 178 (319)
T ss_pred CCC-CCHHHHHHHHHH
Confidence 774 666666666643
No 399
>PRK12377 putative replication protein; Provisional
Probab=98.15 E-value=8.1e-06 Score=88.21 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccch--hhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGES--EKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ges--e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..+++|+||||||||+||.||++++ +..++.+..++++......- .....++++.. ....+|+|||++.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 4689999999999999999999987 56677777777766432110 01122344443 34579999999765321
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.....++.+++..-.+ ...-+|.|||..
T Consensus 179 --------~~~~~~l~~ii~~R~~-----~~~ptiitSNl~ 206 (248)
T PRK12377 179 --------KNEQVVLNQIIDRRTA-----SMRSVGMLTNLN 206 (248)
T ss_pred --------HHHHHHHHHHHHHHHh-----cCCCEEEEcCCC
Confidence 1234566666554321 122356689865
No 400
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.15 E-value=5.8e-06 Score=83.82 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCc-----------------------eeeeccchhhhccccchhhhHHHHHHHH
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLN-----------------------FLSVKGPELINMYIGESEKNVRDIFQKA 763 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~-----------------------~i~v~~~~l~~~~~Gese~~vr~lf~~A 763 (958)
.+..+||+||+|+||+++|+++|..+-.. ++.++...-. .. -.-..+|++...+
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-~~--i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-KS--IKIDQIREIIEFL 94 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-SS--BSHHHHHHHHHHC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-ch--hhHHHHHHHHHHH
Confidence 35668999999999999999999876221 2222111100 00 1124566665554
Q ss_pred Hh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccce
Q 002159 764 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 839 (958)
Q Consensus 764 ~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~ 839 (958)
.. ....|++|||+|.+. ....|.||+.|+.. ..++.+|.+|+.++.|-|.+++ |+- .
T Consensus 95 ~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEep---p~~~~fiL~t~~~~~il~TI~S--Rc~-~ 155 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLEEP---PENTYFILITNNPSKILPTIRS--RCQ-V 155 (162)
T ss_dssp TSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHST---TTTEEEEEEES-GGGS-HHHHT--TSE-E
T ss_pred HHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhcCC---CCCEEEEEEECChHHChHHHHh--hce-E
Confidence 32 345699999999885 56789999999964 4678888899999999999998 874 3
Q ss_pred eecc
Q 002159 840 LYVG 843 (958)
Q Consensus 840 I~v~ 843 (958)
+.++
T Consensus 156 i~~~ 159 (162)
T PF13177_consen 156 IRFR 159 (162)
T ss_dssp EEE-
T ss_pred EecC
Confidence 4443
No 401
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.14 E-value=5.4e-05 Score=85.52 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=39.0
Q ss_pred cCcEEEEEecCCCC-CCChhhhccccEEEEcCCCC-HHHHHHHHHHhc
Q 002159 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLT-EQQRVEMLSQLL 566 (958)
Q Consensus 521 ~~~ViVIaaTn~~~-~Ld~alrrrf~~eIsig~Pd-e~qR~~Il~~ll 566 (958)
..++++|+|.|..+ .+++++..||...++++.|+ ...|.+|++...
T Consensus 185 p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 185 PARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 56889999888555 58999999999999999998 599999998753
No 402
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=1.7e-06 Score=91.62 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=30.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 334445555999999999999999999998876666553
No 403
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.12 E-value=1.1e-06 Score=100.03 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..+..+.|.||+|||||||+|++|+...+.-++|.
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 3444555999999999999999999999877666554
No 404
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.12 E-value=6.3e-07 Score=110.17 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=46.1
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCC-------CCCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTS-------DTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~-------D~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
...+...++|+| +++|+.|++.++.++..+.+ |......+.++.....| +++||+.++..
T Consensus 433 ~~~~~~~~LSgG---ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 433 RAMTPVKALSGG---ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred HHhChhhhCCHH---HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 344555789999 99999999999998877744 44446677777777666 89999988754
No 405
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.2e-05 Score=85.08 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=90.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc-------EE-EEe---c-----------Cccc---ccc-h-------hchHH
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH-------VV-EYS---C-----------HNLM---ASS-E-------RKTSA 443 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~-------~~-~I~---~-----------~~l~---s~~-~-------g~~e~ 443 (958)
+..+||+||+|+||||+++.+|..+..+ .. ... | +++. ... . .-+..
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd 124 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVD 124 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHH
Confidence 4468999999999999999999998541 10 001 1 1111 000 0 01123
Q ss_pred HHHHHHHHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhh
Q 002159 444 ALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKI 519 (958)
Q Consensus 444 ~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~ 519 (958)
.++.+.+... .....|++|||+|.+.. .....+++.+.+.
T Consensus 125 ~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------------~aanaLLk~LEEp--------------------- 168 (351)
T PRK09112 125 EIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------------NAANAILKTLEEP--------------------- 168 (351)
T ss_pred HHHHHHHHhhhccccCCceEEEEEchhhcCH---------------HHHHHHHHHHhcC---------------------
Confidence 3333332221 23457999999998754 1123334333221
Q ss_pred hcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC
Q 002159 520 CRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (958)
Q Consensus 520 ~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf 592 (958)
..++++|..|+.+..+.+.+++|. ..+.++.|+.++-..++....... +.+ ...+..++..+.|-
T Consensus 169 -p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~-----~~~-~~~~~~i~~~s~G~ 233 (351)
T PRK09112 169 -PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQ-----GSD-GEITEALLQRSKGS 233 (351)
T ss_pred -CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhccc-----CCC-HHHHHHHHHHcCCC
Confidence 345566666788889999999987 699999999999999888743211 111 23355566666553
No 406
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.11 E-value=1.6e-06 Score=91.18 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 58 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 33445555999999999999999999998877666654
No 407
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.0001 Score=80.84 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=108.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc--------------ccccc-hhc-hHHHHHHHHHHh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHN--------------LMASS-ERK-TSAALAQAFNTA 452 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg---------~~~~~I~~~~--------------l~s~~-~g~-~e~~l~~~f~~A 452 (958)
.++||+|++|.|||++++..+..-. .+++.+..+. +...+ ... ....-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999987542 2455555432 11111 111 122233444555
Q ss_pred hcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC
Q 002159 453 QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS 532 (958)
Q Consensus 453 ~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~ 532 (958)
+...+.+|+|||++.+.... .....++..+|+.+... ..-+++.+||-..
T Consensus 142 r~~~vrmLIIDE~H~lLaGs---------~~~qr~~Ln~LK~L~Ne---------------------L~ipiV~vGt~~A 191 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS---------YRKQREFLNALKFLGNE---------------------LQIPIVGVGTREA 191 (302)
T ss_pred HHcCCcEEEeechHHHhccc---------HHHHHHHHHHHHHHhhc---------------------cCCCeEEeccHHH
Confidence 66789999999999976421 11234566666665432 2567777777643
Q ss_pred CC--CCChhhhccccEEEEcCC--CCHHHHHHHHHHhccCCccc-CCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 002159 533 SE--GLPPTIRRCFSHEISMGP--LTEQQRVEMLSQLLQPVSEL-TSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGAN 607 (958)
Q Consensus 533 ~~--~Ld~alrrrf~~eIsig~--Pde~qR~~Il~~ll~~~~~l-~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~ 607 (958)
.. .-|+.+.+||. .+.++. +|+ +-..++..+-...++- ..+.........+...+.|.+ +++..|+..|+..
T Consensus 192 ~~al~~D~QLa~RF~-~~~Lp~W~~d~-ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~ 268 (302)
T PF05621_consen 192 YRALRTDPQLASRFE-PFELPRWELDE-EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIA 268 (302)
T ss_pred HHHhccCHHHHhccC-CccCCCCCCCc-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHH
Confidence 33 34677888874 233333 223 3344555554333221 223444555577778888876 4788888888888
Q ss_pred HHHh
Q 002159 608 LIRK 611 (958)
Q Consensus 608 a~~r 611 (958)
|++.
T Consensus 269 AI~s 272 (302)
T PF05621_consen 269 AIRS 272 (302)
T ss_pred HHhc
Confidence 8875
No 408
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=1.4e-06 Score=99.26 Aligned_cols=36 Identities=36% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..+..+.|.||+|||||||+|+||+...+.-+.|.
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 64 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 344444999999999999999999999877766553
No 409
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.4e-07 Score=109.47 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=47.7
Q ss_pred CChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCC-------CCcHHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSD-------TGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 536 Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D-------~~~~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
++.....+....+|+| +++|+.|++.++.++..+.+| ......+.++.....| +++||+..+..
T Consensus 419 l~~~~~~~~~~~LSgG---ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 419 FQGDKVTEETRRFSGG---EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred CChhHhcCchhhCCHH---HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 3333344556789999 999999999999988777444 4445667777777666 89999988754
No 410
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=1.2e-05 Score=90.55 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCC-------------------------ceeeeccchhhhcccc-----chhhh
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSL-------------------------NFLSVKGPELINMYIG-----ESEKN 755 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~-------------------------~~i~v~~~~l~~~~~G-----ese~~ 755 (958)
+.+..+||+||+|+|||++|+.+|..+.. .|+.+....- ...-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 44567999999999999999999987632 2333321100 00001 12345
Q ss_pred HHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhc
Q 002159 756 VRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALL 831 (958)
Q Consensus 756 vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLl 831 (958)
+|++.+.+.. ....|++||+++.+- ....+.|++.|+... .++.+|.+|+.++.+.|.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld-------------~~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN-------------LQAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC-------------HHHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHH
Confidence 7777766653 344699999998875 345677888777652 34556668889999999998
Q ss_pred CcCCccceeeccCCCCHHHHHHHHH
Q 002159 832 RPGRFDKLLYVGVNSDVSYRERVLK 856 (958)
Q Consensus 832 rpgRfd~~I~v~~ppd~~~r~~Il~ 856 (958)
+ |+. .+.|+. |+.+.-...|+
T Consensus 162 S--Rc~-~~~~~~-~~~~~~~~~L~ 182 (325)
T PRK08699 162 S--RCR-KMVLPA-PSHEEALAYLR 182 (325)
T ss_pred H--Hhh-hhcCCC-CCHHHHHHHHH
Confidence 8 885 556764 66665555554
No 411
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=1.5e-06 Score=97.23 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc--CC----CChhhHHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT--SG----FMPRDLHALV 601 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t--~G----fv~~DL~~Lv 601 (958)
++++.+..+....+|+| +++|+.|++.++.+++.+.+|... ...+.++..+. .| ++.||+..+.
T Consensus 153 gL~~~~~~~~~~~LSgG---qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 153 GLDESYLQRSPFELSGG---QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred CCChhhhhCChhhCCHH---HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHH
Confidence 45444566777899999 999999999999998888665543 22222222211 23 7788887664
Q ss_pred H
Q 002159 602 A 602 (958)
Q Consensus 602 ~ 602 (958)
.
T Consensus 230 ~ 230 (305)
T PRK13651 230 E 230 (305)
T ss_pred H
Confidence 3
No 412
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.10 E-value=3.6e-05 Score=87.02 Aligned_cols=160 Identities=22% Similarity=0.333 Sum_probs=101.5
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeecc--------c---
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG--------P--- 742 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~--------~--- 742 (958)
+..+.|.+..|..|.-.. -.+.-.|+|+-|+.|+||||++|+||..+.---....+ +
T Consensus 16 f~aivGqd~lk~aL~l~a------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~ 83 (423)
T COG1239 16 FTAIVGQDPLKLALGLNA------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEM 83 (423)
T ss_pred hhhhcCchHHHHHHhhhh------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhh
Confidence 455777777776552111 12234689999999999999999999987321111100 0
Q ss_pred ---------------------hhhhccccchhhh------HHHH-------HH---HHHhcCCcEEEEcccccccCCCCC
Q 002159 743 ---------------------ELINMYIGESEKN------VRDI-------FQ---KARSARPCVIFFDELDSLAPARGA 785 (958)
Q Consensus 743 ---------------------~l~~~~~Gese~~------vr~l-------f~---~A~~~~P~ILfiDEiD~l~~~r~~ 785 (958)
.+++.=.|.++.. +.++ |+ .| .+...|++|||+..|.
T Consensus 84 c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa-~AnRGIlYvDEvnlL~----- 157 (423)
T COG1239 84 CDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLA-RANRGILYVDEVNLLD----- 157 (423)
T ss_pred hHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchh-hccCCEEEEecccccc-----
Confidence 0111112223331 1111 11 11 1233699999997775
Q ss_pred CCCCcchHHHHHHHHHHhhcC---------CC-CCCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHHHHHH
Q 002159 786 SGDSGGVMDRVVSQMLAEIDG---------LN-DSSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERV 854 (958)
Q Consensus 786 ~~~~~~~~~rv~~~LL~~ldg---------~~-~~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~r~~I 854 (958)
+++++.||+-+.. +. ...-++++|||+|.-+ .|-|.|+- ||...|.+..|.+.+.|.+|
T Consensus 158 --------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 --------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred --------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 6788888887643 21 1234688999888654 67788888 99999999988899999999
Q ss_pred HHHHHhh
Q 002159 855 LKALTRK 861 (958)
Q Consensus 855 l~~~~~~ 861 (958)
.+.....
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 8766553
No 413
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.10 E-value=6e-05 Score=91.52 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=83.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccccchhchHHHHHHHHHHhh---------cCCCeEEeecchhh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMASSERKTSAALAQAFNTAQ---------SYSPTILLLRDFDV 467 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~--~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~---------~~~P~IL~iDeid~ 467 (958)
+|||.|++|||||+++++++..++. .|+.+.+........|.. .+...+.... .....++|+||++.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 5999999999999999999998764 477776522111111111 1111111110 12236899999998
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhh--hhhcCcEEEEEecCCCC---CCChhhhc
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE--KICRQQVLLVAAADSSE---GLPPTIRR 542 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~--~~~~~~ViVIaaTn~~~---~Ld~alrr 542 (958)
+.+. ....+. +.++.- .......+ .....++.||||+|..+ .+++++..
T Consensus 96 l~~~------------~q~~Ll----~al~~g----------~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld 149 (589)
T TIGR02031 96 LDDG------------LSNRLL----QALDEG----------VVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD 149 (589)
T ss_pred CCHH------------HHHHHH----HHHHcC----------CeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH
Confidence 7651 112222 222110 00000001 11245789999988765 68899999
Q ss_pred cccEEEEcC-CCCHHHHHHHHHHhc
Q 002159 543 CFSHEISMG-PLTEQQRVEMLSQLL 566 (958)
Q Consensus 543 rf~~eIsig-~Pde~qR~~Il~~ll 566 (958)
||...+.+. .|+.++|.+|++..+
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHH
Confidence 998877665 467788999998876
No 414
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.7e-05 Score=80.38 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=40.2
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHA 599 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~ 599 (958)
+++..++|+| .+||+.|++.+.-++..+.+|... .+.|-++.+.|.. ++.||+..
T Consensus 127 ~~~i~qLSGG---mrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 127 HKYIWQLSGG---MRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred ccceEeecch---HHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 4677899999 999999999999998888777653 1233444455544 67777764
No 415
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=2.9e-06 Score=90.27 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..+..++|.||||+|||||++++++.+.+.-++|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 58 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3344445999999999999999999998877666554
No 416
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.08 E-value=1.4e-06 Score=99.94 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..+.-+.|.||+|||||||+++||+...+.-+.|.
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~ 72 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 344445999999999999999999998877666554
No 417
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.08 E-value=1.8e-06 Score=92.21 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
++.+..++|.||||+|||||++++++...+.-++|.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 65 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 344444999999999999999999998766655554
No 418
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.08 E-value=1.4e-06 Score=99.55 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC----CChhhHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG----FMPRDLHALV 601 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G----fv~~DL~~Lv 601 (958)
+..+..+++|+| ++||++|++.+..++..+.+|+.. ...+.++.++..| |+.||...+.
T Consensus 130 ~~~~~~~~LSgG---q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 130 AAAHLPAQLSGG---MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred hhhCChhhCCHH---HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 345667899999 999999999999998888666543 1233444444323 7888876543
No 419
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.08 E-value=5.5e-06 Score=85.29 Aligned_cols=73 Identities=27% Similarity=0.541 Sum_probs=49.6
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-hhhhHHHHHHHHHhcCCcEEEEcccccc
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSL 779 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l 779 (958)
+..+.+++|+||+|||||+||.+++.++ +..+..++.++++...-.. ......+.++.... ..+|+|||+...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 4567899999999999999999999865 7788888888887754321 12233445555543 469999998543
No 420
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1.3e-06 Score=100.14 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..+..+.|.||||||||||++++|+.+.+.-++|.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~ 61 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3444455999999999999999999998877666554
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=1.1e-05 Score=89.97 Aligned_cols=102 Identities=26% Similarity=0.363 Sum_probs=65.0
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-hhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
.+.|++|+||+|||||+|+.|+|.++ |.++..+..++++...... ....+.+.++... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 46799999999999999999999988 6777777777776543221 1122344455544 346999999965431
Q ss_pred CCCCCCCcchHHHHHHHHHHh-hcCCCCCCCcEEEEEecCCC
Q 002159 783 RGASGDSGGVMDRVVSQMLAE-IDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~-ldg~~~~~~~v~VI~aTNrp 823 (958)
+.-..+.++..++.. +. .+.-.|.|||.+
T Consensus 232 ------s~~~~~~ll~~Il~~R~~------~~~~ti~TSNl~ 261 (306)
T PRK08939 232 ------SSWVRDEVLGVILQYRMQ------EELPTFFTSNFD 261 (306)
T ss_pred ------cHHHHHHHHHHHHHHHHH------CCCeEEEECCCC
Confidence 111122455555543 22 223467788865
No 422
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.06 E-value=2.2e-06 Score=90.56 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++.+++.+.+.-+++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~ 58 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 33444555999999999999999999998876655554
No 423
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=6.9e-06 Score=84.36 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=41.9
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+....+.+ +.+.+.++..+.|++. +.+.||||+|||||+|++++++.+.-+++..
T Consensus 6 nls~~~~G---r~ll~~vsl~~~pGev-------~ailGPNGAGKSTlLk~LsGel~p~~G~v~~ 60 (259)
T COG4559 6 NLSYSLAG---RRLLDGVSLDLRPGEV-------LAILGPNGAGKSTLLKALSGELSPDSGEVTL 60 (259)
T ss_pred eeEEEeec---ceeccCcceeccCCcE-------EEEECCCCccHHHHHHHhhCccCCCCCeEee
Confidence 33444455 6666667666666666 9999999999999999999999877655543
No 424
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.1e-05 Score=85.59 Aligned_cols=82 Identities=26% Similarity=0.469 Sum_probs=58.2
Q ss_pred cEEEEcccccccCCCCCCCCCcchH-HHHHHHHHHhhcCCCC-------CCCcEEEEEec----CCCCCCChhhcCcCCc
Q 002159 769 CVIFFDELDSLAPARGASGDSGGVM-DRVVSQMLAEIDGLND-------SSQDLFIIGAS----NRPDLIDPALLRPGRF 836 (958)
Q Consensus 769 ~ILfiDEiD~l~~~r~~~~~~~~~~-~rv~~~LL~~ldg~~~-------~~~~v~VI~aT----Nrp~~ldpaLlrpgRf 836 (958)
.|+||||||+++.+.+.++ . ++. .-+...||-.++|-.- ..+.+++||+. ..|+.|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~-~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGG-P-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCC-C-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 3999999999997654222 1 222 3567778888877432 23568888875 56888888886 599
Q ss_pred cceeeccCCCCHHHHHHHH
Q 002159 837 DKLLYVGVNSDVSYRERVL 855 (958)
Q Consensus 837 d~~I~v~~ppd~~~r~~Il 855 (958)
...+++.. -+.+.-..||
T Consensus 328 PIRVEL~~-Lt~~Df~rIL 345 (444)
T COG1220 328 PIRVELDA-LTKEDFERIL 345 (444)
T ss_pred ceEEEccc-CCHHHHHHHH
Confidence 99999884 6777777776
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.05 E-value=2.9e-06 Score=90.08 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=30.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 34445555999999999999999999999877666654
No 426
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=2.3e-06 Score=95.02 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..|..+.|.||||+|||||++++++.+.+.-+.|.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 3444445999999999999999999998877665554
No 427
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.8e-06 Score=99.21 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..+..+.|.||+|||||||+|++|+...+.-++|.
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3344455999999999999999999999877665553
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=2.2e-06 Score=88.45 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc--------H---HHHHHHhhh--cCCCChhhHHHHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS--------E---EFVKDIIGQ--TSGFMPRDLHALVA 602 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~--------~---~~L~~la~~--t~Gfv~~DL~~Lv~ 602 (958)
..+...+|+| ++||++|++++..++..+.-|+.+ . ..+.++|.. |--.+.|++.+.-+
T Consensus 131 ~~yP~qLSGG---QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 131 DAYPAQLSGG---QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred hhCccccCcH---HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 3567899999 999999999999988776445433 1 123344432 11167788777533
No 429
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.03 E-value=9.7e-05 Score=78.95 Aligned_cols=42 Identities=43% Similarity=0.627 Sum_probs=35.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcC--Cceeeeccchhhhc
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINM 747 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~--~~~i~v~~~~l~~~ 747 (958)
..++.+||.||||||||.||-+|+.++| .+|....++++++.
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~ 105 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSN 105 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhh
Confidence 3478899999999999999999999996 56777777776654
No 430
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=8.4e-06 Score=92.06 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=43.7
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHH----HHHHhhhcCC---CChhhHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEF----VKDIIGQTSG---FMPRDLHAL 600 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~----L~~la~~t~G---fv~~DL~~L 600 (958)
++++....++.+++|+| ++||+.|++.++.++..+..|+.. ... |.++.++... ++.||+..+
T Consensus 142 gL~~~~~~~~p~~LSgG---q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 142 GLRPEHYDRYPHMFSGG---QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV 218 (327)
T ss_pred CCChHHhcCCCccCCHH---HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45545566778999999 999999999999998877555433 222 2333222111 789998866
Q ss_pred HH
Q 002159 601 VA 602 (958)
Q Consensus 601 v~ 602 (958)
.+
T Consensus 219 ~~ 220 (327)
T PRK11308 219 EH 220 (327)
T ss_pred HH
Confidence 43
No 431
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.03 E-value=3.4e-06 Score=89.45 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..|..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3444555999999999999999999998877666554
No 432
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.03 E-value=1.9e-05 Score=88.90 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=50.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc---hhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE---SEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge---se~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
..+++|+||+|+|||+|+.|||.++ +..++.+..++++...... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 4789999999999999999999987 6778888888876654221 1111122244443 34699999997654
No 433
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2e-06 Score=89.86 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 381 SILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 381 ~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.++..++++++ |.|+||+|+|||||+|++++..++..++|-
T Consensus 21 ~~Vnl~I~~GE~-------VaiIG~SGaGKSTLLR~lngl~d~t~G~i~ 62 (258)
T COG3638 21 KDVNLEINQGEM-------VAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62 (258)
T ss_pred eeEeEEeCCCcE-------EEEECCCCCcHHHHHHHHhcccCCCcceEE
Confidence 335556666666 999999999999999999997777655543
No 434
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.02 E-value=4.4e-06 Score=89.30 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=30.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~ 429 (958)
+.+..|..+.|.||||+|||||++++++.+ .+.-++|.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 63 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL 63 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE
Confidence 334455559999999999999999999998 66656554
No 435
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.02 E-value=3.9e-05 Score=90.71 Aligned_cols=172 Identities=20% Similarity=0.322 Sum_probs=98.9
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchhh-------hHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEK-------NVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese~-------~vr~lf~~A~~~~P~IL 771 (958)
....++++|++||||+++|+++.... +.+|+.+++..+... .+|.... .....|.. ....+|
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEE
Confidence 35679999999999999999997764 468999988765322 2221100 00112222 234699
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC-----C---CCCcEEEEEecCCCCCCChhhcCcCCccc-----
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN-----D---SSQDLFIIGASNRPDLIDPALLRPGRFDK----- 838 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~-----~---~~~~v~VI~aTNrp~~ldpaLlrpgRfd~----- 838 (958)
||||+|.+.. .+...|+..++.-. . ...++.||+|||++- ..+.+.|+|..
T Consensus 242 ~ld~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 242 LLDEIGEMPL-------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYR 305 (457)
T ss_pred EEechhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHH
Confidence 9999999862 34455555554311 1 123578999998642 24444566655
Q ss_pred --eeeccCCCCHHHHHHHH---HHHHhhcc----CC-CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 839 --LLYVGVNSDVSYRERVL---KALTRKFK----LL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 839 --~I~v~~ppd~~~r~~Il---~~~~~~~~----~~-~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
.+.+.+||-.+++.+|. ..++.+.. .. ..++-+.+.......|-| .+|++++.+|...+
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 24456667666666553 33333221 11 123333222222345655 78888888877543
No 436
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=3.4e-06 Score=93.31 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=28.3
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~ 577 (958)
..++....+|+| +++|+.|++.++.+++.+..|..
T Consensus 136 ~~~~~~~~LS~G---~~qrv~laral~~~P~llllDEP 170 (282)
T PRK13640 136 YIDSEPANLSGG---QKQRVAIAGILAVEPKIIILDES 170 (282)
T ss_pred HhcCCcccCCHH---HHHHHHHHHHHHcCCCEEEEECC
Confidence 344556899999 99999999999999888755544
No 437
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=3.9e-06 Score=90.20 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..|..+.|.||||+|||||++++++.+.+.-+.|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 344445999999999999999999998877666654
No 438
>PF13173 AAA_14: AAA domain
Probab=98.02 E-value=2.6e-05 Score=75.70 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=46.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg--~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
..++|+||.|+||||+++.++..+. .+++.+++.+.......... +.+.+.+.....+.++||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 77888888753321111000 223333222236789999999866
No 439
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.01 E-value=0.00017 Score=77.37 Aligned_cols=43 Identities=33% Similarity=0.556 Sum_probs=36.5
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcC--Cceeeeccchhhh
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELIN 746 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~--~~~i~v~~~~l~~ 746 (958)
|--.++.+|+.|+||||||.+|-.+++.+| .+|.++.++++++
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 444578899999999999999999999997 4788888888764
No 440
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=6e-05 Score=85.12 Aligned_cols=132 Identities=15% Similarity=0.232 Sum_probs=86.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EEec--------------Cccccc--c------------------
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV---EYSC--------------HNLMAS--S------------------ 437 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~---~I~~--------------~~l~s~--~------------------ 437 (958)
+.+..+||+||+|+||+++++.+|+.+....- .-.| +++.-- .
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45567999999999999999999998844210 0011 111000 0
Q ss_pred --h---------hchHHHHHHHHHHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCc
Q 002159 438 --E---------RKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (958)
Q Consensus 438 --~---------g~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~ 502 (958)
. .-....++.+.+... ...-.|++||+.|.+.. .....+|+.+.+.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEP---- 159 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEP---- 159 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCC----
Confidence 0 012234555444332 12235888888887754 2234455554332
Q ss_pred cccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHH
Q 002159 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (958)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ 564 (958)
..++++|.+|++++.|.|.+++|. +.+.++.|+.++..+.+..
T Consensus 160 ------------------p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 ------------------PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ------------------CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 678899999999999999999986 7899999999888877765
No 441
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=3.5e-06 Score=93.50 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..|..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 334444999999999999999999998877665553
No 442
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=4e-06 Score=92.61 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..|..++|.||||+|||||++++++.+.+.-+.|.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 344444999999999999999999998876655543
No 443
>PF13173 AAA_14: AAA domain
Probab=98.01 E-value=1.1e-05 Score=78.23 Aligned_cols=71 Identities=27% Similarity=0.387 Sum_probs=47.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC--CceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~--~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
++-++|+||.|+||||+++.++..+. .+++.++..+.........+ +.+.+.......+.+|||||++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 35689999999999999999998876 77777776554332111111 2233333222367899999998773
No 444
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=4.9e-06 Score=89.86 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=29.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 34455555999999999999999999998766555443
No 445
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=3.3e-06 Score=95.34 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=42.1
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhcCC---CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
...++.+++|+| ++||+.|++.++.++..+..|+.. . ..+.++.++... |+.||+..+.+
T Consensus 146 ~l~~~p~~LSgG---q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 146 RLDVYPHQLSGG---MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219 (326)
T ss_pred HHhCCchhCCHH---HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 345678999999 999999999999998887655443 1 234444332222 88999986543
No 446
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00018 Score=82.39 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=83.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcE----E---------EE--ec-----------Cccc--cc---chh-----
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHV----V---------EY--SC-----------HNLM--AS---SER----- 439 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~----~---------~I--~~-----------~~l~--s~---~~g----- 439 (958)
.+..+||+||+|+||+|++.++|+.+-..- . .+ .| +++. .. ..+
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~ 119 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRT 119 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccc
Confidence 345689999999999999999999873211 0 00 01 1111 00 000
Q ss_pred -chHHHHHHHHHHhh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchh
Q 002159 440 -KTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK 514 (958)
Q Consensus 440 -~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~ 514 (958)
-....++.+.+... ...+.|++||++|.+.. .....+++.+.+.
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~---------------~aanaLLK~LEep---------------- 168 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA---------------NAANALLKVLEEP---------------- 168 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH---------------HHHHHHHHHHhcC----------------
Confidence 12234454444332 23678999999987643 1223333333221
Q ss_pred hhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhc
Q 002159 515 EIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 515 ~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll 566 (958)
...+++|.+|+.+..+.+.+++|. ..+.++.|+..+-.+++....
T Consensus 169 ------p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 169 ------PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ------CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 456777888889989999998875 789999999999888887653
No 447
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.00 E-value=5.1e-06 Score=92.89 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.+..|..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~ 51 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR 51 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 344555566999999999999999999999877766654
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=5.8e-06 Score=88.70 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=30.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.+..+..++|.||||+|||||++++++.+.+.-++|.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 344455556999999999999999999999876555543
No 449
>PRK06921 hypothetical protein; Provisional
Probab=98.00 E-value=2.8e-05 Score=85.24 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=45.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc----CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEccccc
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDS 778 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~----~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~ 778 (958)
.+.+++|+||+|+|||+|+.|||.++ +..++.+...+++...... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999976 4566777766654432111 11122223333 3457999999944
No 450
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.00 E-value=4.5e-06 Score=89.17 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=30.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.++.|..++|.||||+|||||++.+++.+.+.-++|.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 334445555999999999999999999998876655553
No 451
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.99 E-value=3.3e-06 Score=92.17 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..|..++|.||||+|||||++.+++.+.+.-++|.
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 344444999999999999999999998877666653
No 452
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.99 E-value=2.8e-06 Score=96.85 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=40.5
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhcCC---CChhhHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTSG---FMPRDLHALV 601 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t~G---fv~~DL~~Lv 601 (958)
+..+...++|+| ++||+.|++.++.+++.+.+|+.. . ..+.++.++... ++.||+..+.
T Consensus 129 ~~~~~~~~LSgG---q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~ 201 (353)
T PRK10851 129 LADRYPAQLSGG---QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201 (353)
T ss_pred hhhCChhhCCHH---HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 345666899999 999999999999998887665543 2 233444333221 7888886654
No 453
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.99 E-value=3.8e-06 Score=89.32 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=30.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..+..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 33445555999999999999999999999877666554
No 454
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.99 E-value=5.8e-06 Score=91.88 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.|.-++|.||||+||||++|++++.+.+.-++|..
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i 64 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 34444459999999999999999999999887666543
No 455
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=2.1e-06 Score=94.36 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 380 ASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 380 ~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
...++..+.++.. ++|.||||+|||||++++++.+.+.-++|.
T Consensus 17 l~~isl~i~~Ge~-------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 59 (271)
T PRK13638 17 LKGLNLDFSLSPV-------TGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59 (271)
T ss_pred ccceEEEEcCCCE-------EEEECCCCCCHHHHHHHHcCCCCCCccEEE
Confidence 3344445555544 999999999999999999998877655553
No 456
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=3.4e-06 Score=90.91 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=30.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 34445555999999999999999999998876656553
No 457
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=3.5e-06 Score=93.61 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.++.|..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT 65 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 33444555999999999999999999998876655553
No 458
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=4.5e-06 Score=92.56 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|..+.|.||||+|||||++++++.+.+.-++|..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 334444559999999999999999999988776665543
No 459
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.98 E-value=5.1e-06 Score=91.22 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
++.+..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 71 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL 71 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 344444999999999999999999999876655543
No 460
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.98 E-value=1.6e-05 Score=85.83 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence 344444999999999999999999998766555553
No 461
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.98 E-value=1.4e-05 Score=95.65 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=82.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecCcccccchhch-HH--HHHH-HHHHhhcCCCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY----SCHNLMASSERKT-SA--ALAQ-AFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I----~~~~l~s~~~g~~-e~--~l~~-~f~~A~~~~P~IL~iDeid~L~ 469 (958)
.+|||+|+||+|||+++|++++......+.. ++..+........ .+ .++. .+. .....+++|||++.+.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~ 313 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKMD 313 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhCC
Confidence 4799999999999999999998875433221 2222211100000 00 0000 011 1235799999999875
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-------------CC
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-------------GL 536 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-------------~L 536 (958)
+. ....|.+.+++-.. .-..+|. ......++.||||+|... .+
T Consensus 314 ~~----------------~q~~L~e~me~~~i--~i~k~G~------~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 314 DS----------------DRTAIHEAMEQQTI--SIAKAGI------TTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred HH----------------HHHHHHHHHhcCEE--EEEeCCE------EEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 41 12222222221000 0000110 112256789999998653 48
Q ss_pred ChhhhccccE-EEEcCCCCHHHHHHHHHHhcc
Q 002159 537 PPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 537 d~alrrrf~~-eIsig~Pde~qR~~Il~~ll~ 567 (958)
++++++||+- -+..+.|+++...+|+++.+.
T Consensus 370 ~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 370 PAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999999965 466688999999999998653
No 462
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=5.3e-06 Score=89.59 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=29.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 61 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 33444455999999999999999999998876655553
No 463
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=9.8e-06 Score=80.35 Aligned_cols=145 Identities=23% Similarity=0.275 Sum_probs=84.2
Q ss_pred HhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec------Ccccccchh-------chHHHHHHHH
Q 002159 383 LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC------HNLMASSER-------KTSAALAQAF 449 (958)
Q Consensus 383 i~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~------~~l~s~~~g-------~~e~~l~~~f 449 (958)
.+|.++.-.+.++-|.++.|+||+|+||||++|.+-+...++.+.|-. -++....+. .+.+++.|.+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 456666677778889999999999999999999998877665444421 122221111 1233333332
Q ss_pred HHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEe
Q 002159 450 NTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (958)
Q Consensus 450 ~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaa 529 (958)
.- -|.+--+| ..+.-.-..+...+ ........++
T Consensus 103 Rv----iPRV~aLd---VvaePll~~gv~~~--~a~~~a~~Ll------------------------------------- 136 (235)
T COG4778 103 RV----IPRVSALD---VVAEPLLARGVPRE--VARAKAADLL------------------------------------- 136 (235)
T ss_pred Hh----ccCcchHH---HHHhHHHHcCCCHH--HHHHHHHHHH-------------------------------------
Confidence 21 22222222 11110000000000 0111112222
Q ss_pred cCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc
Q 002159 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS 578 (958)
Q Consensus 530 Tn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~ 578 (958)
....+|+.+++.-...+++| |+||+.|++.++-..+.+.+|...
T Consensus 137 --~rLnlperLW~LaPaTFSGG---EqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 137 --TRLNLPERLWSLAPATFSGG---EQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred --HHcCCCHHHhcCCCcccCCc---hheehhhhhhhhccCceEEecCCc
Confidence 22357778888777899999 999999999999998888777653
No 464
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=4.8e-06 Score=91.77 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+..|..+.|.||||+|||||++++++.+.+.-++|..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 64 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 3444459999999999999999999988776666543
No 465
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00016 Score=81.40 Aligned_cols=129 Identities=13% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecCcccccchhchHHHHHHHHHHhh----cCCCeEEeec
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI--------HVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLR 463 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~--------~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iD 463 (958)
.+..+|++||+|+||||+++.+|..+-. ++..+...+ + ..-....++...+.+. .....|++|+
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~ 100 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIY 100 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--C--CCCCHHHHHHHHHHHhcCcccCCceEEEEe
Confidence 3456899999999999999999998732 223332210 0 1112334555554332 2234699999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhcc
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC 543 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrr 543 (958)
++|.+.. +....+++.+.+. ...+++|.+|+.++.+.+.+++|
T Consensus 101 ~ad~m~~---------------~a~naLLK~LEep----------------------p~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 101 NSEKMTE---------------QAQNAFLKTIEEP----------------------PKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred chhhcCH---------------HHHHHHHHHhcCC----------------------CCCeEEEEEeCChHhCcHHHHhh
Confidence 9887743 1223344333221 45566666778889999999988
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhc
Q 002159 544 FSHEISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 544 f~~eIsig~Pde~qR~~Il~~ll 566 (958)
. ..+.+..|++++-...+....
T Consensus 144 c-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 144 C-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred c-eeeeCCCcCHHHHHHHHHHHh
Confidence 6 689999999988776665443
No 466
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.96 E-value=6.1e-06 Score=90.45 Aligned_cols=37 Identities=30% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..|..+.|.||||+|||||++++++.+.+.-++|.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3444455999999999999999999998877665554
No 467
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=2.2e-05 Score=83.64 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=31.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.|.+++|.-+++.||||+||||++|.+.+.+-+.-+.|.
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 455666777999999999999999999999877655544
No 468
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.96 E-value=3.4e-05 Score=90.94 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchh-------hhHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese-------~~vr~lf~~A~~~~P~IL 771 (958)
....++++|++||||+++|+++.... ..+|+.+++..+... .+|... ......|.. +...+|
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 237 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTL 237 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEE
Confidence 35679999999999999999998765 468999988765322 122110 001111222 345699
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCC-------CCChhhcCcCCc
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD-------LIDPALLRPGRF 836 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~-------~ldpaLlrpgRf 836 (958)
||||++.+. ..+...|+..++.-. ....++-+|+||+..- .+.+.|.. |+
T Consensus 238 ~l~~i~~l~-------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 302 (445)
T TIGR02915 238 FLDEIGDLP-------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI 302 (445)
T ss_pred EEechhhCC-------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh
Confidence 999999886 234555555554211 1122678888887652 23333332 33
Q ss_pred cceeeccCCCCHHHHHHH---HHHHHhhc----cCC-CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 837 DKLLYVGVNSDVSYRERV---LKALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 837 d~~I~v~~ppd~~~r~~I---l~~~~~~~----~~~-~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
. .+.+.+||=.+++..| .+.+++.+ ... ..++-+.+..-....|.| .+|++++.+|+..+
T Consensus 303 ~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 303 A-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred c-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2 2344555666665554 33333322 111 123322232222345655 79999999887654
No 469
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=2.8e-05 Score=75.14 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=53.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc--------CCceeeeccchhhhc--------------ccc-ch-hhhHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGPELINM--------------YIG-ES-EKNVRDIFQKA 763 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~--------~~~~i~v~~~~l~~~--------------~~G-es-e~~vr~lf~~A 763 (958)
+..++++||+|+|||++++.++... ..+++.+..+...+. ..+ .+ ......+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 666777765443310 011 12 22334444455
Q ss_pred HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhc
Q 002159 764 RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID 805 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ld 805 (958)
......+|+|||+|.+. + ...++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh
Confidence 55555699999999975 1 356666655555
No 470
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=5e-06 Score=87.77 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=31.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.+..|..++|.||||+|||||++++++.+.+.-++|..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3344555559999999999999999999988776666643
No 471
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=9.9e-06 Score=84.93 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.4
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~ 577 (958)
+|+++....|..|+|+| .+.|.++++++.-.++++..|+.
T Consensus 133 GL~~~~~~~~PsELSGG---M~KRvaLARAialdPell~~DEP 172 (263)
T COG1127 133 GLRGAAADLYPSELSGG---MRKRVALARAIALDPELLFLDEP 172 (263)
T ss_pred CCChhhhhhCchhhcch---HHHHHHHHHHHhcCCCEEEecCC
Confidence 67777778899999999 99999999999999888766654
No 472
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.95 E-value=3.2e-06 Score=96.47 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=31.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.++.|..+.|.||+|||||||++++++...+.-++|.
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~ 51 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF 51 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE
Confidence 344555666999999999999999999999877765553
No 473
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00011 Score=83.26 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=81.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHH
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
.+..+||+||+|+||+++++++|+.+-.. +..+... + ..-....++...+.
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~ 101 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEE 101 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---c--ccCCHHHHHHHHHH
Confidence 44567999999999999999999987321 2222110 0 01123345554443
Q ss_pred hh----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 452 AQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 452 A~----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
.. .....|++||++|.+.. .....+++.+.+. ...+++|
T Consensus 102 ~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEEP----------------------p~~~~~I 144 (329)
T PRK08058 102 FSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEEP----------------------SGGTTAI 144 (329)
T ss_pred HhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcCC----------------------CCCceEE
Confidence 33 12346999999987754 1223444443321 5677888
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHH
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~ 563 (958)
.+|+.+..+.+.+++|. ..+.+..|+..+-...++
T Consensus 145 l~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 145 LLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 88889999999999985 789999998888766654
No 474
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.95 E-value=3.2e-06 Score=89.64 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=30.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.+..|..++|.|+||+|||||++++++...+.-++|..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 70 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence 334444459999999999999999999988776666543
No 475
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.95 E-value=2e-05 Score=90.79 Aligned_cols=171 Identities=17% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAAL 445 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l 445 (958)
+...++.+.. .++..+++-++++.+ |.++||||||||||+|.+.+.+.+..+.+.... +......
T Consensus 394 nv~F~y~~~~--~iy~~l~fgid~~sr-------vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~------H~~~~~y 458 (614)
T KOG0927|consen 394 NVSFGYSDNP--MIYKKLNFGIDLDSR-------VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS------HNKLPRY 458 (614)
T ss_pred ccccCCCCcc--hhhhhhhcccCcccc-------eeEecCCCCchhhhHHHHhhccccccccccccc------cccchhh
Confidence 4444444422 455555555555555 999999999999999999999988888776543 1111122
Q ss_pred HHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEE
Q 002159 446 AQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVL 525 (958)
Q Consensus 446 ~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~Vi 525 (958)
.|....+....-+. ++.+.++-. + ....+++..++.++
T Consensus 459 ~Qh~~e~ldl~~s~-----le~~~~~~~------~-~~~~e~~r~ilgrf------------------------------ 496 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSS-----LEFMMPKFP------D-EKELEEMRSILGRF------------------------------ 496 (614)
T ss_pred hhhhHhhcCcchhH-----HHHHHHhcc------c-cchHHHHHHHHHHh------------------------------
Confidence 22222111100000 001111000 0 01223344444443
Q ss_pred EEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc-------CCCCCcHHHHHHHhhhcCC---CChh
Q 002159 526 LVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPR 595 (958)
Q Consensus 526 VIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l-------~~D~~~~~~L~~la~~t~G---fv~~ 595 (958)
+|......+....+|.| ++.|+..+....+.+.+| |+|++..+.+.+....+.| +++|
T Consensus 497 ---------gLtgd~q~~p~~~LS~G---qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSH 564 (614)
T KOG0927|consen 497 ---------GLTGDAQVVPMSQLSDG---QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSH 564 (614)
T ss_pred ---------CCCccccccchhhcccc---cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeec
Confidence 22323334555778999 888888888888776655 6677778888888888988 8999
Q ss_pred hHHHHHHHHH
Q 002159 596 DLHALVADAG 605 (958)
Q Consensus 596 DL~~Lv~eA~ 605 (958)
|...+..-|.
T Consensus 565 DfrlI~qVae 574 (614)
T KOG0927|consen 565 DFRLISQVAE 574 (614)
T ss_pred hhhHHHHHHH
Confidence 9988865543
No 476
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.95 E-value=6.7e-06 Score=86.65 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=31.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.+..+..++|.||||+|||||++.+++.+.+.-++|..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3444555569999999999999999999988776666543
No 477
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.95 E-value=3.1e-05 Score=82.89 Aligned_cols=139 Identities=19% Similarity=0.292 Sum_probs=77.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
.+-.++||+|||||..+|.+|..+|.+++.++|.+ +-....+.++|.-+.. ..+.+.+||++.+..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~------~~~~~~l~ril~G~~~-~GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSE------QMDYQSLSRILKGLAQ-SGAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTS------SS-HHHHHHHHHHHHH-HT-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccc------cccHHHHHHHHHHHhh-cCchhhhhhhhhhhH-------
Confidence 34689999999999999999999999999999987 4456677787776653 579999999997754
Q ss_pred CCccccchHHHHHHHHHhcCCCCCc-cccccCCCCchhhhhhhhcCcEEEEEecCC----CCCCChhhhccccEEEEcCC
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAED-EDEESHGYFPVKEIEKICRQQVLLVAAADS----SEGLPPTIRRCFSHEISMGP 552 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~-~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~----~~~Ld~alrrrf~~eIsig~ 552 (958)
...+.+...+..+...+... ..-...|. ....+...-+..|.|. ...+|+.++..| +.+.+..
T Consensus 99 -----~vLS~i~~~i~~i~~al~~~~~~~~~~g~------~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~ 166 (231)
T PF12774_consen 99 -----EVLSVISQQIQSIQDALRAKQKSFTLEGQ------EIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMV 166 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTSSEEEETTC------EEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S
T ss_pred -----HHHHHHHHHHHHHHHhhcccccccccCCC------EEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeC
Confidence 12233333332221110000 00000111 1111233444555552 357888887766 8899998
Q ss_pred CCHHHHHHHH
Q 002159 553 LTEQQRVEML 562 (958)
Q Consensus 553 Pde~qR~~Il 562 (958)
||.+.-.++.
T Consensus 167 PD~~~I~ei~ 176 (231)
T PF12774_consen 167 PDLSLIAEIL 176 (231)
T ss_dssp --HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8887755543
No 478
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.94 E-value=5.4e-06 Score=88.00 Aligned_cols=36 Identities=28% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..+..++|.|+||+|||||++++++.+.+.-++|.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 344444999999999999999999998766555543
No 479
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=5.9e-06 Score=86.91 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.+..++|.||||+|||||++.+++.+.+.-++|..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3444555569999999999999999999998776665543
No 480
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.93 E-value=6.8e-06 Score=86.95 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..+..++|.||||+|||||++++++.+.+.-++|.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 33444555999999999999999999998876665554
No 481
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.93 E-value=5.7e-05 Score=80.06 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=83.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCC---ceeeecc---ch------h-------------hh-cc------------c
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSL---NFLSVKG---PE------L-------------IN-MY------------I 749 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~---~~i~v~~---~~------l-------------~~-~~------------~ 749 (958)
...++++||.|+|||+|++.+...... ..+.+.. .. + .. .. .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 567999999999999999999998832 1111111 00 0 00 00 0
Q ss_pred cchhhhHHHHHHHHHhcC-CcEEEEccccccc-CCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC--
Q 002159 750 GESEKNVRDIFQKARSAR-PCVIFFDELDSLA-PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL-- 825 (958)
Q Consensus 750 Gese~~vr~lf~~A~~~~-P~ILfiDEiD~l~-~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~-- 825 (958)
......+..+++...... ..||+|||++.+. ..+. ....+..|...++.... ..++.+|.++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH-----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhhccc-cCCceEEEECCchHHHH
Confidence 112345667777666543 4899999999998 3221 13456666666665333 344444444333211
Q ss_pred ----CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc-C-CCCcCHHHHHhhCCCCC
Q 002159 826 ----IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK-L-LEDVSLYSIAKKCPPNF 881 (958)
Q Consensus 826 ----ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~-~-~~d~~l~~la~~~t~g~ 881 (958)
-...+. ||+.. ++++. -+.++-.++++...+... + ..+.+++.+... +.|+
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~-l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~gG~ 227 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKP-LSKEEAREFLKELFKELIKLPFSDEDIEEIYSL-TGGN 227 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE-----HHHHHHHHHHHHHCC------HHHHHHHHHH-HTT-
T ss_pred HhhcccCccc--cccce-EEEee-CCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH-hCCC
Confidence 112233 48877 88884 777777888887766551 1 245556666666 3554
No 482
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.93 E-value=6.4e-06 Score=94.04 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..+..+.|.||||||||||+|++++.+.+.-+.|.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 56 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV 56 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 344455999999999999999999998877665554
No 483
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.93 E-value=3e-05 Score=84.36 Aligned_cols=73 Identities=22% Similarity=0.476 Sum_probs=51.1
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchh-hhHH-HHHHHHHhcCCcEEEEccccccc
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESE-KNVR-DIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese-~~vr-~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
..+.+++|+||||+|||+||-||+.++ |..++.+..++++...-..-. .... ++.+.. ....+|+|||+....
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~ 180 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP 180 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc
Confidence 378899999999999999999999877 677888888888765332111 1111 122212 234699999996654
No 484
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=5.1e-06 Score=92.17 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.|..+.|.||||+|||||++++++.+.+.-+.|..
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~ 66 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI 66 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 34444559999999999999999999988776665543
No 485
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.92 E-value=7.5e-06 Score=87.77 Aligned_cols=37 Identities=27% Similarity=0.195 Sum_probs=29.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3344445599999999999999999999886655544
No 486
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00014 Score=81.74 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=86.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE--EEEec--------------Cccc--ccchh--chHHHHHHHHHHhh---
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSC--------------HNLM--ASSER--KTSAALAQAFNTAQ--- 453 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~--~~I~~--------------~~l~--s~~~g--~~e~~l~~~f~~A~--- 453 (958)
+..+|++||.|+||+++|+++|+.+-..- ..-.| +++. ....+ -....+|++.+.+.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 44689999999999999999999873311 00011 1111 00011 23455665544433
Q ss_pred -cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC
Q 002159 454 -SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS 532 (958)
Q Consensus 454 -~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~ 532 (958)
...-.|++||++|.+.. ....++|+.+.+. ...+++|-+|+.
T Consensus 104 ~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEEP----------------------p~~~~fiL~t~~ 146 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE---------------AAANALLKTLEEP----------------------RPNTYFLLQADL 146 (325)
T ss_pred ccCCceEEEEechhhhCH---------------HHHHHHHHHhcCC----------------------CCCeEEEEEECC
Confidence 22346999999998754 2234555555432 677899999999
Q ss_pred CCCCChhhhccccEEEEcCCCCHHHHHHHHHHh
Q 002159 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL 565 (958)
Q Consensus 533 ~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~l 565 (958)
+..+.|.+++|. ..+.+..|+.++-.+.+...
T Consensus 147 ~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 147 SAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 999999999985 77899999888877666543
No 487
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=6.6e-06 Score=93.11 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=41.4
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC----CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG----FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G----fv~~DL~~Lv~ 602 (958)
...++.+++|+| ++||+.|++.++.++.++..|+.. .. .+.++.++ .| |+.||+..+..
T Consensus 151 ~~~~~p~~LSgG---~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~ 224 (330)
T PRK15093 151 AMRSFPYELTEG---ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQ 224 (330)
T ss_pred HHhCCchhCCHH---HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHH
Confidence 445677899999 999999999999998887555433 22 23333322 23 88999876643
No 488
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.91 E-value=6.5e-06 Score=92.09 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.++.|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~ 62 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 33444555999999999999999999998877666654
No 489
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.91 E-value=1.6e-05 Score=98.05 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=77.7
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCC-------ceeeeccchhhhccccc-hhhhH--HHHHHHHHhcCCcEEEEc
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSL-------NFLSVKGPELINMYIGE-SEKNV--RDIFQKARSARPCVIFFD 774 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~-------~~i~v~~~~l~~~~~Ge-se~~v--r~lf~~A~~~~P~ILfiD 774 (958)
++...+|||+|.||||||++|++++..... ++..+....... +.+. +.... ...+.. +...+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEE---cCCCeEEec
Confidence 344568999999999999999999986532 222222211110 0000 00000 001111 223599999
Q ss_pred ccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC-------------CCChhhc
Q 002159 775 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-------------LIDPALL 831 (958)
Q Consensus 775 EiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-------------~ldpaLl 831 (958)
|+|.+. ......|+..|+.-. .-..++.||||+|... .|+++|+
T Consensus 565 Eidkms-------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 565 ELDKCH-------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred chhhCC-------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 999885 234455666564221 1124688999999642 5679999
Q ss_pred CcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 832 RPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 832 rpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
. |||-+..+--+|+.+.=..|-++.
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHH
Confidence 9 999776555446655444443333
No 490
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.91 E-value=6.7e-06 Score=87.92 Aligned_cols=38 Identities=29% Similarity=0.215 Sum_probs=30.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 33444555999999999999999999998877666554
No 491
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.91 E-value=7e-06 Score=86.79 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+..|..++|.||||+|||||++++++.+.+.-++|.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 3444555999999999999999999998876666554
No 492
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=3.2e-05 Score=82.51 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=90.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE--ecCcccccchhc----hHHHHHHHHHHhhcCCCeEEeecchhhhhhcc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY--SCHNLMASSERK----TSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I--~~~~l~s~~~g~----~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~ 472 (958)
-..|+|++|+||||+++.||+-+.+.-+.| ++.-+.....+. ....+..+||.|+- -|-.-+-.++..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL-FpH~tVrgNL~Y----- 99 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL-FPHYTVRGNLRY----- 99 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc-ccceEEecchhh-----
Confidence 358999999999999999999998875554 443333322111 12334555666552 121111111100
Q ss_pred cCCCCCCcccc-chHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcC
Q 002159 473 SNESLPNDQVG-LSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 473 s~~~~~~~~~~-~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig 551 (958)
.... ....+..+. ...++. .+..|+...+|+|
T Consensus 100 -------G~~~~~~~~fd~iv---------------------------------------~lLGI~-hLL~R~P~~LSGG 132 (352)
T COG4148 100 -------GMWKSMRAQFDQLV---------------------------------------ALLGIE-HLLDRYPGTLSGG 132 (352)
T ss_pred -------hhcccchHhHHHHH---------------------------------------HHhCcH-HHHhhCCCccCcc
Confidence 0000 111222211 112333 4567778999999
Q ss_pred CCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHHHHH
Q 002159 552 PLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVADA 604 (958)
Q Consensus 552 ~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv~eA 604 (958)
|+||++|-++++..+.++..|+.. -.+++++.+.++= ||+|-+..+.+-|
T Consensus 133 ---EkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLA 196 (352)
T COG4148 133 ---EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 (352)
T ss_pred ---hhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhh
Confidence 999999999999998887555433 3467777777766 8999888776654
No 493
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=8.5e-06 Score=86.07 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+..+ .++|.||||+|||||++++++.+.+.-++|.
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 57 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 3344 4999999999999999999998877666554
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.91 E-value=3.4e-05 Score=79.51 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=29.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.+.+..+..++|.||||+|||||++.+++.+.+.-++|
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 33445555599999999999999999999876654444
No 495
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=1e-05 Score=87.88 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=37.4
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc-CC----CChhhHHHHH
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT-SG----FMPRDLHALV 601 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t-~G----fv~~DL~~Lv 601 (958)
.+...++|+| ++||+.|++.++.+++.+.+|+.. ..++.++..+. .| ++.||+..+.
T Consensus 141 ~~~~~~LSgG---~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14247 141 DAPAGKLSGG---QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA 209 (250)
T ss_pred cCCcccCCHH---HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4455789999 999999999999988877555433 33333333221 22 6677776543
No 496
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.90 E-value=3.5e-05 Score=76.74 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred EEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh----------------------ccccc--hhhhHHHHHHHH
Q 002159 711 VLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN----------------------MYIGE--SEKNVRDIFQKA 763 (958)
Q Consensus 711 iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~----------------------~~~Ge--se~~vr~lf~~A 763 (958)
++++||||+|||++++.++... +.+++.++...... .+... .+...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 34454444322211 00011 111122335566
Q ss_pred HhcCCcEEEEcccccccCCCCC-CCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 764 RSARPCVIFFDELDSLAPARGA-SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~~r~~-~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
....|.+++|||+..+...... .+.......+.+..++..+.. .++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-----CCceEEEEEecCC
Confidence 6778899999999988743211 001112233445555544432 3555666666554
No 497
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.90 E-value=7.3e-05 Score=88.79 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=98.0
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-----cccchhh-------hHHHHHHHHHhcCCcEE
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEK-------NVRDIFQKARSARPCVI 771 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-----~~Gese~-------~vr~lf~~A~~~~P~IL 771 (958)
....++++|++||||+++|+++.... +.+|+.+++..+... .+|.... .....|.. .....|
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl 236 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTL 236 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEE
Confidence 35569999999999999999998876 468999998766321 1221110 00111222 234589
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCCC-------CCChhhcCcCCc
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD-------LIDPALLRPGRF 836 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp~-------~ldpaLlrpgRf 836 (958)
||||+|.+.. .+...|+..++.-. ...-++-+|+||+..- .+.+.|.. ||
T Consensus 237 ~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 301 (469)
T PRK10923 237 FLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL 301 (469)
T ss_pred EEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh
Confidence 9999998862 34455555554221 1123578888887642 34445554 55
Q ss_pred cceeeccCCCCHHHHHHH---HHHHHhhc----cCC-CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 837 DKLLYVGVNSDVSYRERV---LKALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 837 d~~I~v~~ppd~~~r~~I---l~~~~~~~----~~~-~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
. .+.+.+||=.+++.+| ...+++.. ... ..++-+.+...+.+.|.| ++|++++++|...+
T Consensus 302 ~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 302 N-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred c-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2 2344445655555444 34444322 111 112223333333467776 79999998887654
No 498
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.90 E-value=6.6e-06 Score=100.99 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=45.3
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC---CChhhHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG---FMPRDLHAL 600 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G---fv~~DL~~L 600 (958)
++++....+..+++|+| ++||+.|+++++.++.++..|+.. .. .+.++.++... |+.||+..+
T Consensus 451 gL~~~~~~~~~~~LSgG---qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v 527 (623)
T PRK10261 451 GLLPEHAWRYPHEFSGG---QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527 (623)
T ss_pred CCCHHHhhCCcccCCHH---HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45545566778999999 999999999999998877555443 22 23333333222 889999876
Q ss_pred HH
Q 002159 601 VA 602 (958)
Q Consensus 601 v~ 602 (958)
..
T Consensus 528 ~~ 529 (623)
T PRK10261 528 ER 529 (623)
T ss_pred HH
Confidence 44
No 499
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.89 E-value=7.4e-06 Score=88.14 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=30.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.+..|..++|.||||+|||||++++++...+.-+.|.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 59 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 334455555999999999999999999998876666554
No 500
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.89 E-value=2.2e-05 Score=88.85 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=40.6
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC----CChhhHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG----FMPRDLHALV 601 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G----fv~~DL~~Lv 601 (958)
..++.+++|+| ++||+.|++.++.++.++..|+.. .. .+.++.++ .| |+.||+..+.
T Consensus 155 ~~~~p~~LSgG---~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~ 226 (330)
T PRK09473 155 MKMYPHEFSGG---MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVA 226 (330)
T ss_pred hcCCcccCCHH---HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHH
Confidence 35788999999 999999999999998877555433 22 23344332 23 8899998654
Done!