Query 002159
Match_columns 958
No_of_seqs 722 out of 4596
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2E-107 6E-112 994.8 46.8 738 66-956 10-765 (806)
2 1ypw_A Transitional endoplasmi 100.0 8.2E-80 2.8E-84 764.3 32.4 738 65-955 9-764 (806)
3 4b4t_J 26S protease regulatory 100.0 8.4E-54 2.9E-58 483.8 21.5 264 666-949 139-404 (405)
4 4b4t_I 26S protease regulatory 100.0 3.5E-52 1.2E-56 471.2 17.2 258 667-944 174-433 (437)
5 4b4t_L 26S protease subunit RP 100.0 1E-50 3.4E-55 465.9 22.1 262 667-948 173-436 (437)
6 4b4t_H 26S protease regulatory 100.0 9.4E-51 3.2E-55 463.8 21.6 263 667-949 201-466 (467)
7 4b4t_M 26S protease regulatory 100.0 1.9E-50 6.5E-55 463.2 21.5 255 666-940 172-428 (434)
8 4b4t_K 26S protease regulatory 100.0 2.2E-50 7.5E-55 462.4 18.7 261 667-946 164-427 (428)
9 3cf2_A TER ATPase, transitiona 100.0 2.4E-44 8.4E-49 439.2 17.7 281 668-953 197-489 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.1E-43 7.3E-48 394.6 23.6 282 668-955 5-320 (322)
11 3cf0_A Transitional endoplasmi 100.0 1.1E-42 3.8E-47 385.3 21.8 285 667-954 7-301 (301)
12 3hu3_A Transitional endoplasmi 100.0 4.4E-41 1.5E-45 394.6 36.0 468 65-682 9-484 (489)
13 2x8a_A Nuclear valosin-contain 100.0 2.5E-42 8.4E-47 377.2 18.3 266 668-943 3-273 (274)
14 3eie_A Vacuolar protein sortin 100.0 1.9E-41 6.6E-46 378.9 18.5 284 667-956 10-320 (322)
15 2qp9_X Vacuolar protein sortin 100.0 7.2E-41 2.5E-45 379.1 22.5 283 667-955 43-352 (355)
16 2zan_A Vacuolar protein sortin 100.0 2.4E-40 8.1E-45 385.6 20.5 283 667-955 126-442 (444)
17 3d8b_A Fidgetin-like protein 1 100.0 1.9E-35 6.7E-40 334.9 18.8 278 668-956 77-356 (357)
18 3b9p_A CG5977-PA, isoform A; A 100.0 3.5E-35 1.2E-39 323.7 17.3 278 667-955 13-293 (297)
19 3hu3_A Transitional endoplasmi 100.0 2.1E-35 7.3E-40 346.3 15.8 263 671-938 200-463 (489)
20 2ce7_A Cell division protein F 100.0 2.3E-34 7.9E-39 335.0 22.9 247 669-936 10-258 (476)
21 4b4t_J 26S protease regulatory 100.0 8.4E-34 2.9E-38 320.7 25.2 240 365-658 147-391 (405)
22 4b4t_I 26S protease regulatory 100.0 4.6E-33 1.6E-37 315.2 26.6 240 365-658 181-425 (437)
23 1lv7_A FTSH; alpha/beta domain 100.0 4.9E-33 1.7E-37 300.4 24.8 249 668-937 5-255 (257)
24 4b4t_M 26S protease regulatory 100.0 7.9E-33 2.7E-37 317.3 26.9 241 365-659 180-425 (434)
25 3h4m_A Proteasome-activating n 100.0 3.1E-33 1.1E-37 306.1 21.4 268 667-954 9-280 (285)
26 3vfd_A Spastin; ATPase, microt 100.0 4.5E-33 1.5E-37 319.2 20.2 279 667-956 107-387 (389)
27 4b4t_H 26S protease regulatory 100.0 2.8E-32 9.4E-37 311.7 25.0 239 365-657 208-451 (467)
28 2dhr_A FTSH; AAA+ protein, hex 100.0 1.9E-32 6.6E-37 320.6 20.7 247 670-937 26-274 (499)
29 4b4t_L 26S protease subunit RP 100.0 5E-32 1.7E-36 310.9 22.8 240 365-658 180-424 (437)
30 4b4t_K 26S protease regulatory 100.0 3.2E-31 1.1E-35 303.8 25.7 238 365-656 171-414 (428)
31 1ixz_A ATP-dependent metallopr 100.0 1.1E-31 3.8E-36 289.2 20.4 244 667-931 8-253 (254)
32 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.3E-32 7.7E-37 294.9 13.4 247 670-937 1-252 (262)
33 2r62_A Cell division protease 100.0 5.5E-33 1.9E-37 301.5 5.2 256 667-942 3-261 (268)
34 1r6b_X CLPA protein; AAA+, N-t 100.0 2.2E-30 7.6E-35 321.4 24.0 420 396-904 206-722 (758)
35 1iy2_A ATP-dependent metallopr 100.0 4.5E-30 1.5E-34 280.7 21.4 243 668-931 33-277 (278)
36 3pxi_A Negative regulator of g 100.0 3E-29 1E-33 311.0 26.3 431 397-905 201-732 (758)
37 1ypw_A Transitional endoplasmi 100.0 1.9E-29 6.4E-34 313.1 19.6 265 669-938 198-463 (806)
38 1qvr_A CLPB protein; coiled co 100.0 1.4E-28 4.7E-33 308.5 17.5 451 397-906 191-828 (854)
39 3t15_A Ribulose bisphosphate c 99.9 3.4E-27 1.2E-31 260.0 13.3 223 704-934 32-278 (293)
40 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.9E-25 1.3E-29 246.8 23.6 219 366-613 12-235 (322)
41 2x8a_A Nuclear valosin-contain 99.9 1.8E-24 6.1E-29 236.0 21.5 247 366-658 10-266 (274)
42 3eie_A Vacuolar protein sortin 99.9 3.6E-24 1.2E-28 239.0 22.0 219 366-613 18-240 (322)
43 2qp9_X Vacuolar protein sortin 99.9 5.4E-24 1.8E-28 240.8 20.5 217 366-612 51-272 (355)
44 3cf0_A Transitional endoplasmi 99.9 7.5E-23 2.6E-27 226.2 22.3 262 366-657 15-282 (301)
45 2zan_A Vacuolar protein sortin 99.9 3.3E-23 1.1E-27 241.1 18.2 220 366-613 134-357 (444)
46 2c9o_A RUVB-like 1; hexameric 99.9 2.1E-25 7.1E-30 260.7 -5.0 206 668-892 30-262 (456)
47 2ce7_A Cell division protein F 99.9 6.5E-22 2.2E-26 230.3 24.3 236 367-657 17-257 (476)
48 1lv7_A FTSH; alpha/beta domain 99.9 1.9E-21 6.6E-26 209.5 24.1 235 367-656 13-252 (257)
49 3h4m_A Proteasome-activating n 99.9 1.1E-21 3.8E-26 214.3 22.2 237 367-658 18-260 (285)
50 2qz4_A Paraplegin; AAA+, SPG7, 99.9 9.1E-22 3.1E-26 211.8 20.8 221 366-610 6-231 (262)
51 3d8b_A Fidgetin-like protein 1 99.9 6.4E-21 2.2E-25 215.8 23.0 249 367-658 85-336 (357)
52 3b9p_A CG5977-PA, isoform A; A 99.9 9.1E-21 3.1E-25 208.4 22.1 249 367-657 22-273 (297)
53 3vfd_A Spastin; ATPase, microt 99.9 1.8E-20 6.2E-25 214.5 24.1 247 367-657 116-366 (389)
54 2dhr_A FTSH; AAA+ protein, hex 99.9 9.2E-21 3.1E-25 221.9 19.7 237 366-657 31-272 (499)
55 1ixz_A ATP-dependent metallopr 99.8 4.9E-20 1.7E-24 198.1 20.5 211 374-610 23-238 (254)
56 2c9o_A RUVB-like 1; hexameric 99.8 1.6E-21 5.6E-26 227.8 7.3 364 374-934 44-437 (456)
57 3tiw_A Transitional endoplasmi 99.8 6.2E-20 2.1E-24 186.5 17.7 177 65-350 9-186 (187)
58 3cmw_A Protein RECA, recombina 99.8 2.3E-22 8E-27 260.2 -0.3 154 668-823 1013-1218(1706)
59 1iy2_A ATP-dependent metallopr 99.8 3.1E-19 1.1E-23 194.7 21.0 211 374-610 47-262 (278)
60 3qwz_A Transitional endoplasmi 99.8 2.6E-19 9E-24 185.1 16.1 177 65-350 12-189 (211)
61 3syl_A Protein CBBX; photosynt 99.8 3.8E-20 1.3E-24 204.4 9.4 238 674-930 30-290 (309)
62 2r62_A Cell division protease 99.8 1.4E-20 4.8E-25 203.8 4.0 209 375-608 19-233 (268)
63 3t15_A Ribulose bisphosphate c 99.8 8.2E-19 2.8E-23 193.1 15.9 186 393-600 32-223 (293)
64 1g41_A Heat shock protein HSLU 99.8 5.9E-20 2E-24 211.0 2.1 168 675-855 15-188 (444)
65 3uk6_A RUVB-like 2; hexameric 99.7 5.1E-18 1.7E-22 192.0 14.6 235 669-948 38-345 (368)
66 3m6a_A ATP-dependent protease 99.7 7.7E-19 2.6E-23 209.1 7.4 237 668-935 74-342 (543)
67 1d2n_A N-ethylmaleimide-sensit 99.7 1.3E-17 4.6E-22 181.0 12.7 199 704-937 60-267 (272)
68 3hws_A ATP-dependent CLP prote 99.7 1.6E-17 5.4E-22 188.2 10.7 242 677-931 17-346 (363)
69 1ofh_A ATP-dependent HSL prote 99.7 1.8E-17 6.2E-22 182.4 10.3 245 676-935 16-300 (310)
70 3pfi_A Holliday junction ATP-d 99.7 7.2E-16 2.5E-20 172.4 18.8 217 670-936 24-256 (338)
71 1g41_A Heat shock protein HSLU 99.7 8E-16 2.7E-20 176.8 19.4 356 396-946 49-442 (444)
72 1hqc_A RUVB; extended AAA-ATPa 99.6 3.9E-15 1.3E-19 165.1 17.3 233 670-953 7-260 (324)
73 1r6b_X CLPA protein; AAA+, N-t 99.6 5.2E-15 1.8E-19 183.4 14.8 244 673-954 184-457 (758)
74 1um8_A ATP-dependent CLP prote 99.6 3E-15 1E-19 170.3 10.5 242 676-933 22-364 (376)
75 1g8p_A Magnesium-chelatase 38 99.6 1.3E-14 4.5E-19 162.6 14.5 223 665-934 14-322 (350)
76 4akg_A Glutathione S-transfera 99.6 3.7E-14 1.3E-18 191.7 20.5 344 397-777 1267-1677(2695)
77 4fcw_A Chaperone protein CLPB; 99.6 4.1E-15 1.4E-19 164.0 9.2 210 676-905 18-286 (311)
78 2z4s_A Chromosomal replication 99.5 2.9E-14 1E-18 165.5 15.9 193 708-936 130-334 (440)
79 2v1u_A Cell division control p 99.5 7.1E-14 2.4E-18 158.1 17.2 222 675-935 19-277 (387)
80 3pxg_A Negative regulator of g 99.5 1.5E-14 5.3E-19 169.2 11.5 186 672-898 177-386 (468)
81 1jbk_A CLPB protein; beta barr 99.5 6.4E-15 2.2E-19 149.0 7.0 157 673-855 20-194 (195)
82 3pvs_A Replication-associated 99.5 3.5E-14 1.2E-18 164.8 13.7 218 672-947 23-257 (447)
83 3syl_A Protein CBBX; photosynt 99.5 8.8E-14 3E-18 153.3 14.7 182 395-611 65-265 (309)
84 3pxi_A Negative regulator of g 99.5 3.2E-14 1.1E-18 176.4 12.1 187 672-899 177-387 (758)
85 1l8q_A Chromosomal replication 99.5 1.9E-13 6.4E-18 152.1 16.4 170 707-896 36-214 (324)
86 1qvr_A CLPB protein; coiled co 99.5 2.4E-14 8.3E-19 179.5 10.2 200 673-898 168-393 (854)
87 2chg_A Replication factor C sm 99.5 1.1E-13 3.9E-18 143.2 13.1 201 670-932 12-224 (226)
88 3te6_A Regulatory protein SIR3 99.5 2E-14 7E-19 158.8 7.7 179 706-904 43-293 (318)
89 3m6a_A ATP-dependent protease 99.5 9E-14 3.1E-18 165.5 13.5 188 396-603 107-310 (543)
90 3aji_B S6C, proteasome (prosom 99.5 4E-14 1.4E-18 125.5 7.6 82 847-947 2-83 (83)
91 1in4_A RUVB, holliday junction 99.5 3.9E-12 1.3E-16 142.3 24.0 233 673-955 23-274 (334)
92 1sxj_A Activator 1 95 kDa subu 99.5 1E-13 3.4E-18 164.3 11.4 202 670-895 34-254 (516)
93 1d2n_A N-ethylmaleimide-sensit 99.4 5.1E-13 1.7E-17 144.8 14.9 166 395-592 62-229 (272)
94 2p65_A Hypothetical protein PF 99.4 5.1E-14 1.8E-18 142.1 6.6 148 673-844 20-185 (187)
95 3vlf_B 26S protease regulatory 99.4 2E-13 6.8E-18 122.4 9.4 85 847-949 2-87 (88)
96 1njg_A DNA polymerase III subu 99.4 3.4E-13 1.2E-17 141.3 12.4 206 672-931 20-248 (250)
97 3uk6_A RUVB-like 2; hexameric 99.4 1.6E-12 5.6E-17 146.7 18.1 173 396-610 69-312 (368)
98 2krk_A 26S protease regulatory 99.4 2.1E-13 7.1E-18 121.6 8.0 75 845-937 10-84 (86)
99 2qby_A CDC6 homolog 1, cell di 99.4 6.1E-13 2.1E-17 150.2 14.1 202 674-899 19-254 (386)
100 2qby_B CDC6 homolog 3, cell di 99.4 2E-12 6.9E-17 146.5 18.2 212 675-935 20-271 (384)
101 3bos_A Putative DNA replicatio 99.4 1.1E-12 3.9E-17 138.0 14.8 181 707-932 51-241 (242)
102 3u61_B DNA polymerase accessor 99.4 1.4E-13 4.8E-18 152.9 7.8 169 671-876 22-204 (324)
103 2r44_A Uncharacterized protein 99.4 1E-12 3.4E-17 146.6 14.1 154 675-861 27-200 (331)
104 1fnn_A CDC6P, cell division co 99.4 3.9E-12 1.3E-16 144.1 18.3 201 675-900 17-257 (389)
105 1cz4_A VCP-like ATPase; double 99.4 4.9E-12 1.7E-16 128.7 15.8 162 81-350 7-174 (185)
106 1sxj_D Activator 1 41 kDa subu 99.4 3.7E-12 1.3E-16 142.6 15.8 188 670-897 32-242 (353)
107 3pfi_A Holliday junction ATP-d 99.4 9.4E-12 3.2E-16 138.9 18.3 196 374-605 36-231 (338)
108 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.4E-12 4.9E-17 152.8 11.5 176 708-900 41-269 (500)
109 1ofh_A ATP-dependent HSL prote 99.4 3E-12 1E-16 140.6 13.3 154 396-564 49-213 (310)
110 1jbk_A CLPB protein; beta barr 99.3 8.1E-13 2.8E-17 133.4 7.0 134 397-562 43-194 (195)
111 3kw6_A 26S protease regulatory 99.3 2.5E-12 8.6E-17 112.5 9.0 74 845-936 2-75 (78)
112 3f9v_A Minichromosome maintena 99.3 6E-13 2E-17 159.9 6.5 136 706-861 325-492 (595)
113 3pxg_A Negative regulator of g 99.3 4.1E-12 1.4E-16 148.6 12.9 164 398-608 202-385 (468)
114 2chq_A Replication factor C sm 99.3 8.3E-12 2.8E-16 137.5 14.3 170 669-876 11-192 (319)
115 2dzn_B 26S protease regulatory 99.3 6.3E-13 2.2E-17 117.5 4.1 81 849-947 1-82 (82)
116 3cmw_A Protein RECA, recombina 99.3 6.4E-11 2.2E-15 154.1 22.5 117 704-821 1427-1566(1706)
117 3cmu_A Protein RECA, recombina 99.3 4.5E-11 1.6E-15 157.0 20.6 119 703-823 1422-1563(2050)
118 3hws_A ATP-dependent CLP prote 99.3 1E-11 3.4E-16 140.5 12.7 212 396-611 50-325 (363)
119 1sxj_B Activator 1 37 kDa subu 99.3 9.5E-12 3.3E-16 137.2 11.5 183 671-893 17-212 (323)
120 2z4s_A Chromosomal replication 99.3 1.6E-11 5.6E-16 142.4 13.7 173 397-607 130-312 (440)
121 1l8q_A Chromosomal replication 99.3 3E-11 1E-15 134.2 14.9 166 397-603 37-210 (324)
122 1jr3_A DNA polymerase III subu 99.2 3.3E-11 1.1E-15 135.9 14.3 191 672-895 13-226 (373)
123 1iqp_A RFCS; clamp loader, ext 99.2 2.3E-11 7.8E-16 134.4 12.1 184 670-893 20-215 (327)
124 1hqc_A RUVB; extended AAA-ATPa 99.2 5.4E-11 1.9E-15 131.7 14.9 176 397-603 38-213 (324)
125 2bjv_A PSP operon transcriptio 99.2 2.2E-11 7.5E-16 131.3 11.3 193 673-897 4-240 (265)
126 4akg_A Glutathione S-transfera 99.2 2.2E-11 7.6E-16 164.9 13.1 140 397-562 645-789 (2695)
127 3cmu_A Protein RECA, recombina 99.2 5.3E-11 1.8E-15 156.4 15.8 130 690-820 710-866 (2050)
128 3bos_A Putative DNA replicatio 99.2 1.7E-10 5.7E-15 121.3 16.7 164 397-608 52-224 (242)
129 2v1u_A Cell division control p 99.2 6E-10 2.1E-14 125.7 22.3 193 375-607 27-255 (387)
130 1sxj_E Activator 1 40 kDa subu 99.2 1.1E-10 3.9E-15 130.8 15.9 188 669-894 8-241 (354)
131 3u61_B DNA polymerase accessor 99.2 1.6E-10 5.4E-15 128.3 16.5 168 374-594 33-210 (324)
132 2p65_A Hypothetical protein PF 99.2 1.5E-11 5.2E-16 123.8 7.4 127 397-554 43-187 (187)
133 3te6_A Regulatory protein SIR3 99.2 9.7E-11 3.3E-15 129.4 13.7 153 375-568 28-213 (318)
134 4fcw_A Chaperone protein CLPB; 99.2 8.6E-11 3E-15 129.2 13.2 186 396-611 46-281 (311)
135 2chg_A Replication factor C sm 99.1 5.5E-10 1.9E-14 115.2 16.5 145 399-591 40-195 (226)
136 3k1j_A LON protease, ATP-depen 99.1 4.9E-11 1.7E-15 143.9 9.7 152 766-950 200-390 (604)
137 1njg_A DNA polymerase III subu 99.1 1E-09 3.5E-14 114.5 17.9 158 398-604 46-231 (250)
138 1ojl_A Transcriptional regulat 99.1 1.3E-10 4.6E-15 128.2 11.4 170 706-897 23-235 (304)
139 3pvs_A Replication-associated 99.1 5.2E-10 1.8E-14 129.8 16.0 146 398-591 51-206 (447)
140 3vkg_A Dynein heavy chain, cyt 99.1 5.4E-10 1.8E-14 152.2 18.0 344 397-777 1304-1714(3245)
141 2r44_A Uncharacterized protein 99.1 3.7E-10 1.2E-14 125.8 13.8 140 398-568 47-200 (331)
142 3n70_A Transport activator; si 99.1 5.7E-11 2E-15 116.3 6.3 92 706-823 22-116 (145)
143 1in4_A RUVB, holliday junction 99.1 2.7E-09 9.2E-14 119.2 20.4 180 397-608 51-230 (334)
144 1sxj_A Activator 1 95 kDa subu 99.1 4.7E-10 1.6E-14 132.8 14.4 165 396-604 76-252 (516)
145 1sxj_C Activator 1 40 kDa subu 99.1 3.7E-10 1.3E-14 126.3 12.1 176 671-890 21-209 (340)
146 1um8_A ATP-dependent CLP prote 99.1 1.7E-09 6E-14 122.6 17.4 211 396-610 71-341 (376)
147 3co5_A Putative two-component 99.1 4.7E-11 1.6E-15 116.7 3.4 91 707-823 26-116 (143)
148 2qby_A CDC6 homolog 1, cell di 99.1 3.2E-09 1.1E-13 119.6 18.7 178 395-607 43-251 (386)
149 2qby_B CDC6 homolog 3, cell di 99.0 2.5E-09 8.6E-14 120.9 17.3 157 368-567 22-211 (384)
150 1a5t_A Delta prime, HOLB; zinc 99.0 1.8E-09 6.1E-14 120.7 15.0 145 708-876 24-193 (334)
151 1g8p_A Magnesium-chelatase 38 99.0 2.4E-09 8.1E-14 119.6 15.8 45 521-565 185-231 (350)
152 3ozx_A RNAse L inhibitor; ATP 99.0 9.3E-11 3.2E-15 138.9 4.5 59 541-602 132-202 (538)
153 1fnn_A CDC6P, cell division co 99.0 1E-08 3.5E-13 115.8 20.0 175 399-608 46-254 (389)
154 1w5s_A Origin recognition comp 99.0 6E-09 2.1E-13 118.9 17.6 180 708-899 50-275 (412)
155 1sxj_D Activator 1 41 kDa subu 99.0 4.8E-09 1.6E-13 117.2 15.1 146 399-592 60-227 (353)
156 1sxj_B Activator 1 37 kDa subu 98.9 5E-09 1.7E-13 115.3 13.8 145 400-592 45-201 (323)
157 2chq_A Replication factor C sm 98.9 3.2E-09 1.1E-13 116.6 12.3 149 399-591 40-195 (319)
158 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 3.2E-09 1.1E-13 124.4 10.4 141 398-566 42-196 (500)
159 2gno_A DNA polymerase III, gam 98.9 9.4E-09 3.2E-13 113.3 13.2 125 708-859 18-152 (305)
160 1jr3_A DNA polymerase III subu 98.9 2E-08 6.9E-13 113.0 16.3 159 397-604 38-224 (373)
161 2iw3_A Elongation factor 3A; a 98.9 9.3E-10 3.2E-14 137.0 5.6 64 535-602 536-610 (986)
162 3j16_B RLI1P; ribosome recycli 98.9 7.9E-10 2.7E-14 132.5 4.5 60 540-602 214-286 (608)
163 1iqp_A RFCS; clamp loader, ext 98.9 2E-08 7E-13 110.6 15.5 149 399-591 48-203 (327)
164 1sxj_E Activator 1 40 kDa subu 98.9 1.3E-08 4.4E-13 114.0 14.0 147 400-591 39-228 (354)
165 1a5t_A Delta prime, HOLB; zinc 98.8 1E-07 3.4E-12 106.5 20.1 148 370-566 5-180 (334)
166 3vkg_A Dynein heavy chain, cyt 98.8 1.7E-08 5.9E-13 137.7 15.9 141 398-562 605-749 (3245)
167 1yqt_A RNAse L inhibitor; ATP- 98.8 1.3E-09 4.4E-14 129.4 3.6 58 541-602 152-223 (538)
168 3bk7_A ABC transporter ATP-bin 98.8 1.3E-09 4.3E-14 131.0 3.3 58 540-601 221-292 (607)
169 3f9v_A Minichromosome maintena 98.8 5.7E-09 2E-13 125.3 8.4 143 398-568 328-492 (595)
170 3ec2_A DNA replication protein 98.8 6.5E-09 2.2E-13 105.1 7.1 106 704-824 34-144 (180)
171 2bjv_A PSP operon transcriptio 98.8 2.7E-08 9.4E-13 106.9 11.8 140 398-566 30-194 (265)
172 2kjq_A DNAA-related protein; s 98.7 8.8E-09 3E-13 101.4 6.5 107 707-844 35-147 (149)
173 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.7E-09 1.6E-13 115.2 4.8 123 703-830 118-242 (331)
174 3co5_A Putative two-component 98.7 7.4E-09 2.5E-13 101.0 5.4 62 398-470 28-89 (143)
175 3n70_A Transport activator; si 98.7 2.5E-08 8.6E-13 97.4 8.7 64 397-470 24-90 (145)
176 1svm_A Large T antigen; AAA+ f 98.7 1.4E-08 4.9E-13 114.8 7.5 120 702-844 163-284 (377)
177 1sxj_C Activator 1 40 kDa subu 98.7 1.4E-07 4.9E-12 105.2 15.4 125 400-568 49-184 (340)
178 1wlf_A PEX1, peroxisome biogen 98.6 1.9E-07 6.6E-12 94.4 12.4 152 92-348 23-175 (179)
179 1ojl_A Transcriptional regulat 98.6 6.7E-08 2.3E-12 106.4 9.3 141 397-566 25-190 (304)
180 2gno_A DNA polymerase III, gam 98.6 2.6E-07 9E-12 101.7 13.0 124 398-566 19-152 (305)
181 3ux8_A Excinuclease ABC, A sub 98.6 5.1E-09 1.7E-13 127.9 -1.6 56 541-599 196-266 (670)
182 1ny5_A Transcriptional regulat 98.5 1.7E-07 5.9E-12 106.7 10.0 170 708-897 160-370 (387)
183 2kjq_A DNAA-related protein; s 98.5 1.8E-07 6.1E-12 92.0 8.8 59 396-469 35-96 (149)
184 2r2a_A Uncharacterized protein 98.5 2.5E-07 8.7E-12 95.4 9.0 123 710-844 7-152 (199)
185 2w58_A DNAI, primosome compone 98.5 1.2E-07 4.2E-12 97.3 6.6 70 709-780 55-128 (202)
186 1w5s_A Origin recognition comp 98.5 1.3E-06 4.6E-11 99.3 15.7 181 397-608 50-273 (412)
187 3k1j_A LON protease, ATP-depen 98.4 4.8E-07 1.6E-11 109.0 10.1 88 521-609 250-356 (604)
188 2krk_A 26S protease regulatory 98.4 9.7E-07 3.3E-11 78.3 8.4 75 551-658 9-83 (86)
189 3kw6_A 26S protease regulatory 98.3 1.1E-06 3.9E-11 76.3 8.5 75 551-658 1-75 (78)
190 3rlf_A Maltose/maltodextrin im 98.3 4.5E-08 1.5E-12 110.5 -1.1 39 392-430 24-62 (381)
191 3ec2_A DNA replication protein 98.3 2.8E-07 9.5E-12 93.0 4.4 72 395-468 36-112 (180)
192 3tif_A Uncharacterized ABC tra 98.3 1.1E-07 3.6E-12 100.9 1.2 39 392-430 26-64 (235)
193 3fvq_A Fe(3+) IONS import ATP- 98.3 7.4E-08 2.5E-12 108.0 -0.4 38 392-429 25-62 (359)
194 1z47_A CYSA, putative ABC-tran 98.3 8.4E-08 2.9E-12 107.5 -0.5 38 393-430 37-74 (355)
195 2yyz_A Sugar ABC transporter, 98.3 8.4E-08 2.9E-12 107.8 -0.5 39 392-430 24-62 (359)
196 3dzd_A Transcriptional regulat 98.3 1.7E-06 6E-11 97.7 10.2 170 708-896 152-360 (368)
197 2it1_A 362AA long hypothetical 98.3 8.7E-08 3E-12 107.7 -0.8 39 392-430 24-62 (362)
198 1v43_A Sugar-binding transport 98.3 1.1E-07 3.6E-12 107.4 -0.3 39 392-430 32-70 (372)
199 2qgz_A Helicase loader, putati 98.2 3.1E-07 1.1E-11 101.3 3.2 71 708-780 152-227 (308)
200 3gfo_A Cobalt import ATP-bindi 98.2 2.3E-07 7.9E-12 100.6 1.9 39 392-430 29-67 (275)
201 4g1u_C Hemin import ATP-bindin 98.2 1.2E-07 4E-12 102.5 -0.8 39 391-429 31-69 (266)
202 3d31_A Sulfate/molybdate ABC t 98.2 1.8E-07 6.2E-12 104.6 0.2 37 394-430 23-59 (348)
203 2fna_A Conserved hypothetical 98.2 2.4E-05 8.3E-10 86.6 17.2 164 709-891 31-251 (357)
204 1oxx_K GLCV, glucose, ABC tran 98.2 1E-07 3.6E-12 106.9 -2.1 40 391-430 25-64 (353)
205 1g29_1 MALK, maltose transport 98.2 1.2E-07 4.1E-12 107.1 -1.9 39 392-430 24-62 (372)
206 1ye8_A Protein THEP1, hypothet 98.2 6.9E-06 2.4E-10 83.1 10.8 26 710-735 2-27 (178)
207 3vlf_B 26S protease regulatory 98.2 4E-06 1.4E-10 74.7 7.7 72 554-658 2-73 (88)
208 3tui_C Methionine import ATP-b 98.1 2.9E-07 1E-11 103.2 -0.0 39 392-430 49-87 (366)
209 3f8t_A Predicted ATPase involv 98.1 6.9E-06 2.3E-10 94.1 10.7 114 709-842 240-377 (506)
210 2vhj_A Ntpase P4, P4; non- hyd 98.1 2.5E-06 8.5E-11 93.6 6.7 74 395-470 121-196 (331)
211 2pcj_A ABC transporter, lipopr 98.1 2.7E-07 9.2E-12 97.1 -1.0 39 392-430 25-63 (224)
212 2onk_A Molybdate/tungstate ABC 98.1 2.6E-07 9E-12 98.2 -1.4 37 393-430 21-57 (240)
213 2yz2_A Putative ABC transporte 98.1 3.2E-07 1.1E-11 99.0 -0.9 40 391-430 27-66 (266)
214 2w58_A DNAI, primosome compone 98.1 2.7E-06 9.3E-11 87.2 5.8 70 398-469 55-128 (202)
215 1b0u_A Histidine permease; ABC 98.1 5.4E-07 1.9E-11 97.0 0.2 40 391-430 26-65 (262)
216 2olj_A Amino acid ABC transpor 98.0 1.6E-06 5.4E-11 93.4 3.2 40 391-430 44-83 (263)
217 2qi9_C Vitamin B12 import ATP- 98.0 5.4E-07 1.9E-11 96.3 -1.0 40 391-431 20-59 (249)
218 2pjz_A Hypothetical protein ST 98.0 5.1E-07 1.8E-11 97.2 -2.2 40 389-430 23-62 (263)
219 1vpl_A ABC transporter, ATP-bi 98.0 1.1E-06 3.7E-11 94.3 0.1 40 391-430 35-74 (256)
220 2nq2_C Hypothetical ABC transp 98.0 3.7E-06 1.3E-10 90.0 4.2 39 391-429 25-63 (253)
221 2qen_A Walker-type ATPase; unk 97.9 7.4E-05 2.5E-09 82.5 14.7 166 709-891 32-247 (350)
222 2qen_A Walker-type ATPase; unk 97.9 0.00011 3.7E-09 81.2 16.1 159 398-593 32-239 (350)
223 1ji0_A ABC transporter; ATP bi 97.9 2.5E-06 8.5E-11 90.6 2.5 39 392-430 27-65 (240)
224 3aji_B S6C, proteasome (prosom 97.9 1.4E-05 4.9E-10 70.1 6.5 72 554-658 2-73 (83)
225 1ye8_A Protein THEP1, hypothet 97.9 5.9E-05 2E-09 76.2 11.9 27 399-425 2-28 (178)
226 2fna_A Conserved hypothetical 97.9 0.00013 4.6E-09 80.5 16.0 34 399-432 32-65 (357)
227 1g6h_A High-affinity branched- 97.9 3.4E-06 1.2E-10 90.5 2.2 39 392-430 28-66 (257)
228 1tue_A Replication protein E1; 97.8 9.3E-06 3.2E-10 83.4 4.7 34 704-737 54-87 (212)
229 2d2e_A SUFC protein; ABC-ATPas 97.8 2.1E-06 7.1E-11 91.8 -0.4 37 539-578 134-171 (250)
230 3nh6_A ATP-binding cassette SU 97.8 8.4E-06 2.9E-10 89.6 3.3 40 391-430 74-113 (306)
231 2ff7_A Alpha-hemolysin translo 97.8 2E-06 6.7E-11 91.8 -1.8 39 392-430 30-68 (247)
232 1sgw_A Putative ABC transporte 97.7 3.3E-06 1.1E-10 88.0 -0.6 39 392-430 30-68 (214)
233 2zu0_C Probable ATP-dependent 97.7 3.5E-06 1.2E-10 91.0 -0.5 39 391-429 40-80 (267)
234 2ehv_A Hypothetical protein PH 97.7 6E-05 2.1E-09 79.3 9.1 129 704-843 26-206 (251)
235 3gd7_A Fusion complex of cysti 97.7 1.8E-06 6.1E-11 98.0 -3.1 37 392-429 42-78 (390)
236 1mv5_A LMRA, multidrug resista 97.7 3.7E-06 1.3E-10 89.4 -0.8 38 391-428 22-59 (243)
237 2qgz_A Helicase loader, putati 97.7 1.5E-05 5.1E-10 87.8 4.0 70 397-468 152-226 (308)
238 2ihy_A ABC transporter, ATP-bi 97.7 4E-06 1.4E-10 91.0 -0.7 40 391-430 41-80 (279)
239 3b5x_A Lipid A export ATP-bind 97.7 1.7E-05 5.9E-10 95.0 4.5 40 389-428 361-400 (582)
240 2cvh_A DNA repair and recombin 97.7 7.8E-05 2.7E-09 76.9 8.8 39 704-742 16-54 (220)
241 1n0w_A DNA repair protein RAD5 97.7 5.2E-05 1.8E-09 79.5 7.1 79 703-781 19-133 (243)
242 2r2a_A Uncharacterized protein 97.7 2.4E-05 8.3E-10 80.5 4.4 123 399-553 7-153 (199)
243 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00017 5.7E-09 74.8 10.6 29 704-732 19-47 (235)
244 4a74_A DNA repair and recombin 97.5 5E-05 1.7E-09 78.9 5.0 30 703-732 20-49 (231)
245 3ozx_A RNAse L inhibitor; ATP 97.5 1.6E-05 5.5E-10 94.1 1.2 59 541-602 379-451 (538)
246 1xp8_A RECA protein, recombina 97.5 0.00017 5.8E-09 81.2 9.3 116 703-819 69-207 (366)
247 2ghi_A Transport protein; mult 97.5 9.3E-06 3.2E-10 87.2 -1.5 38 391-429 40-77 (260)
248 3hr8_A Protein RECA; alpha and 97.5 0.00026 9E-09 79.2 10.2 116 703-819 56-194 (356)
249 3bk7_A ABC transporter ATP-bin 97.5 2.6E-05 8.9E-10 93.6 2.1 59 541-602 465-537 (607)
250 2dzn_B 26S protease regulatory 97.5 8E-05 2.7E-09 65.2 4.6 69 556-657 1-69 (82)
251 3f8t_A Predicted ATPase involv 97.5 0.00034 1.2E-08 80.2 10.8 126 399-557 241-385 (506)
252 1yqt_A RNAse L inhibitor; ATP- 97.4 8.7E-05 3E-09 87.9 5.5 60 540-602 394-467 (538)
253 3qf4_A ABC transporter, ATP-bi 97.4 1.6E-05 5.5E-10 95.3 -1.0 43 387-429 359-401 (587)
254 2zr9_A Protein RECA, recombina 97.4 0.00013 4.6E-09 81.6 6.0 79 703-781 56-153 (349)
255 1u0j_A DNA replication protein 97.4 0.0001 3.4E-09 79.0 4.7 29 706-734 102-130 (267)
256 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00063 2.2E-08 70.4 10.7 36 395-430 21-59 (235)
257 3j16_B RLI1P; ribosome recycli 97.3 0.00019 6.4E-09 86.1 6.7 59 541-602 461-533 (608)
258 3dzd_A Transcriptional regulat 97.3 0.00078 2.7E-08 75.9 10.9 137 398-566 153-316 (368)
259 3b60_A Lipid A export ATP-bind 97.3 2.1E-05 7.1E-10 94.3 -2.4 44 387-430 359-402 (582)
260 1ny5_A Transcriptional regulat 97.3 0.0013 4.4E-08 74.7 12.5 139 398-566 161-325 (387)
261 3qf4_B Uncharacterized ABC tra 97.3 7.1E-05 2.4E-09 90.0 2.2 45 386-430 370-414 (598)
262 2cvh_A DNA repair and recombin 97.3 0.00079 2.7E-08 69.2 9.8 39 394-432 17-55 (220)
263 2cbz_A Multidrug resistance-as 97.3 0.00051 1.7E-08 72.6 8.3 30 703-732 26-55 (237)
264 2ehv_A Hypothetical protein PH 97.2 0.0012 4.2E-08 69.1 10.9 25 394-418 27-51 (251)
265 1pzn_A RAD51, DNA repair and r 97.2 0.00028 9.6E-09 79.0 6.0 31 702-732 125-155 (349)
266 4a82_A Cystic fibrosis transme 97.2 1.7E-05 5.7E-10 95.1 -4.5 43 388-430 358-400 (578)
267 2bbs_A Cystic fibrosis transme 97.2 0.00011 3.6E-09 80.2 2.1 42 389-430 56-97 (290)
268 2iw3_A Elongation factor 3A; a 97.2 0.00028 9.5E-09 88.2 6.1 40 391-430 693-732 (986)
269 2yl4_A ATP-binding cassette SU 97.2 0.00011 3.8E-09 88.2 2.5 44 387-430 360-403 (595)
270 2i3b_A HCR-ntpase, human cance 97.2 0.00062 2.1E-08 69.3 7.6 24 709-732 2-25 (189)
271 1u94_A RECA protein, recombina 97.2 0.00029 9.9E-09 79.0 5.6 79 703-781 58-155 (356)
272 1qhx_A CPT, protein (chloramph 97.1 0.00064 2.2E-08 67.6 7.4 36 708-743 3-38 (178)
273 3io5_A Recombination and repai 97.1 0.00056 1.9E-08 74.8 7.4 115 703-819 24-168 (333)
274 2eyu_A Twitching motility prot 97.1 0.0003 1E-08 75.5 5.2 72 705-776 22-107 (261)
275 3vaa_A Shikimate kinase, SK; s 97.1 0.00025 8.5E-09 72.5 4.3 35 394-428 22-56 (199)
276 2z43_A DNA repair and recombin 97.1 0.00029 9.8E-09 78.0 5.0 79 703-781 102-217 (324)
277 4gp7_A Metallophosphoesterase; 97.1 0.00031 1.1E-08 70.1 4.7 24 704-727 5-28 (171)
278 3lda_A DNA repair protein RAD5 97.1 0.00059 2E-08 77.6 7.5 80 703-782 173-288 (400)
279 3vaa_A Shikimate kinase, SK; s 97.1 0.0003 1E-08 71.9 4.0 38 703-740 20-57 (199)
280 1zp6_A Hypothetical protein AT 97.0 0.00032 1.1E-08 70.7 3.7 41 704-744 5-45 (191)
281 2dr3_A UPF0273 protein PH0284; 97.0 0.0021 7E-08 67.2 10.1 39 702-740 17-58 (247)
282 3gfo_A Cobalt import ATP-bindi 97.0 0.00049 1.7E-08 74.4 5.2 30 703-732 29-58 (275)
283 3jvv_A Twitching mobility prot 97.0 0.00074 2.5E-08 75.7 6.8 71 706-776 121-205 (356)
284 1zp6_A Hypothetical protein AT 97.0 0.00034 1.2E-08 70.5 3.5 38 394-431 6-43 (191)
285 1htw_A HI0065; nucleotide-bind 97.0 0.00043 1.5E-08 68.4 4.1 43 378-428 21-63 (158)
286 1v5w_A DMC1, meiotic recombina 97.0 0.00061 2.1E-08 76.0 5.7 79 703-781 117-233 (343)
287 4g1u_C Hemin import ATP-bindin 96.9 0.00067 2.3E-08 72.9 5.7 30 703-732 32-61 (266)
288 1kag_A SKI, shikimate kinase I 96.9 0.00055 1.9E-08 67.8 4.5 30 397-426 4-33 (173)
289 3rlf_A Maltose/maltodextrin im 96.9 0.00076 2.6E-08 76.0 6.0 30 703-732 24-53 (381)
290 1jr3_D DNA polymerase III, del 96.9 0.0037 1.3E-07 69.4 11.6 140 708-876 18-173 (343)
291 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00042 1.4E-08 76.9 3.7 76 702-777 165-250 (330)
292 3fvq_A Fe(3+) IONS import ATP- 96.9 0.001 3.5E-08 74.4 6.7 31 702-732 24-54 (359)
293 1qhx_A CPT, protein (chloramph 96.9 0.0008 2.7E-08 66.9 5.3 33 398-430 4-36 (178)
294 2eyu_A Twitching motility prot 96.8 0.00038 1.3E-08 74.6 2.7 70 397-466 25-108 (261)
295 4a74_A DNA repair and recombin 96.8 0.002 6.7E-08 66.6 8.0 27 395-421 23-49 (231)
296 3trf_A Shikimate kinase, SK; a 96.8 0.00065 2.2E-08 68.1 4.1 32 397-428 5-36 (185)
297 2orw_A Thymidine kinase; TMTK, 96.8 0.00039 1.3E-08 70.5 2.4 70 708-779 3-88 (184)
298 1kag_A SKI, shikimate kinase I 96.8 0.00072 2.5E-08 66.9 4.3 31 708-738 4-34 (173)
299 1nlf_A Regulatory protein REPA 96.8 0.0015 5.2E-08 70.3 7.2 29 704-732 26-54 (279)
300 3g5u_A MCG1178, multidrug resi 96.8 0.00012 4.2E-09 95.3 -1.9 44 387-430 406-449 (1284)
301 3thx_B DNA mismatch repair pro 96.8 0.0023 7.8E-08 79.9 9.4 113 703-827 668-800 (918)
302 1n0w_A DNA repair protein RAD5 96.8 0.002 6.8E-08 67.2 7.7 76 395-470 22-133 (243)
303 3trf_A Shikimate kinase, SK; a 96.8 0.00071 2.4E-08 67.8 3.9 33 708-740 5-37 (185)
304 2yuj_A Ubiquitin fusion degrad 96.8 0.0085 2.9E-07 60.2 11.5 141 93-342 40-183 (190)
305 2yyz_A Sugar ABC transporter, 96.8 0.0015 5.2E-08 73.1 6.9 30 703-732 24-53 (359)
306 1svm_A Large T antigen; AAA+ f 96.8 0.0017 6E-08 73.2 7.4 66 393-470 165-230 (377)
307 1y63_A LMAJ004144AAA protein; 96.7 0.00073 2.5E-08 68.1 3.8 33 395-427 8-41 (184)
308 2it1_A 362AA long hypothetical 96.7 0.0014 4.9E-08 73.4 6.4 30 703-732 24-53 (362)
309 1z47_A CYSA, putative ABC-tran 96.7 0.0013 4.6E-08 73.4 6.1 30 703-732 36-65 (355)
310 1v43_A Sugar-binding transport 96.7 0.0016 5.5E-08 73.3 6.7 31 702-732 31-61 (372)
311 4eun_A Thermoresistant glucoki 96.7 0.0011 3.9E-08 67.5 5.0 35 396-432 28-62 (200)
312 2ewv_A Twitching motility prot 96.7 0.0016 5.5E-08 73.5 6.5 73 704-776 132-218 (372)
313 2jv2_A Putative uncharacterize 96.7 0.0039 1.3E-07 54.4 7.4 51 274-348 29-79 (83)
314 2p5t_B PEZT; postsegregational 96.7 0.0023 8E-08 67.9 7.4 38 707-744 31-68 (253)
315 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.6E-08 66.8 4.4 35 705-739 2-36 (193)
316 3tui_C Methionine import ATP-b 96.6 0.0018 6.2E-08 72.5 6.4 31 702-732 48-78 (366)
317 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.9E-08 65.1 4.3 31 399-429 3-33 (173)
318 2p5t_B PEZT; postsegregational 96.6 0.0013 4.5E-08 69.8 4.9 39 394-432 29-67 (253)
319 1g29_1 MALK, maltose transport 96.6 0.0015 5.3E-08 73.5 5.6 31 703-733 24-54 (372)
320 3g5u_A MCG1178, multidrug resi 96.6 0.00018 6.2E-09 93.7 -2.4 45 386-430 1048-1092(1284)
321 1gvn_B Zeta; postsegregational 96.6 0.0018 6.2E-08 70.3 5.9 56 374-430 11-66 (287)
322 2pze_A Cystic fibrosis transme 96.6 0.00056 1.9E-08 71.9 1.8 40 391-430 28-67 (229)
323 3hr8_A Protein RECA; alpha and 96.6 0.006 2.1E-07 68.2 10.2 76 395-470 59-153 (356)
324 4gp7_A Metallophosphoesterase; 96.6 0.0028 9.7E-08 63.0 6.8 21 395-415 7-27 (171)
325 1knq_A Gluconate kinase; ALFA/ 96.6 0.0016 5.3E-08 64.7 4.8 30 397-426 8-37 (175)
326 2r8r_A Sensor protein; KDPD, P 96.6 0.033 1.1E-06 58.0 14.9 120 709-847 7-167 (228)
327 3uie_A Adenylyl-sulfate kinase 96.6 0.0028 9.7E-08 64.6 6.7 36 397-432 25-63 (200)
328 3iij_A Coilin-interacting nucl 96.5 0.0014 4.7E-08 65.5 4.1 34 706-739 9-42 (180)
329 2rhm_A Putative kinase; P-loop 96.5 0.0019 6.3E-08 65.0 5.1 32 396-427 4-35 (193)
330 3nwj_A ATSK2; P loop, shikimat 96.5 0.0013 4.5E-08 70.0 4.1 47 378-428 33-79 (250)
331 1y63_A LMAJ004144AAA protein; 96.5 0.0013 4.5E-08 66.2 3.8 35 706-740 8-43 (184)
332 3jvv_A Twitching mobility prot 96.5 0.0026 9E-08 71.2 6.6 68 399-466 125-206 (356)
333 1via_A Shikimate kinase; struc 96.5 0.0017 5.7E-08 64.7 4.5 29 399-427 6-34 (175)
334 2ixe_A Antigen peptide transpo 96.5 0.0008 2.7E-08 72.5 2.2 40 391-430 39-78 (271)
335 1tue_A Replication protein E1; 96.5 0.0013 4.5E-08 67.5 3.6 31 395-425 56-86 (212)
336 2cbz_A Multidrug resistance-as 96.5 0.00058 2E-08 72.1 1.0 40 391-430 25-64 (237)
337 3kb2_A SPBC2 prophage-derived 96.5 0.0016 5.5E-08 64.1 4.1 31 710-740 3-33 (173)
338 2iyv_A Shikimate kinase, SK; t 96.5 0.0015 5.1E-08 65.5 3.9 30 399-428 4-33 (184)
339 3c8u_A Fructokinase; YP_612366 96.5 0.0024 8.3E-08 65.6 5.6 36 395-430 20-58 (208)
340 3iij_A Coilin-interacting nucl 96.5 0.0018 6E-08 64.7 4.4 32 397-428 11-42 (180)
341 2i1q_A DNA repair and recombin 96.5 0.0014 4.8E-08 72.2 3.9 29 703-731 93-121 (322)
342 4eun_A Thermoresistant glucoki 96.4 0.0017 5.8E-08 66.3 4.2 32 706-737 27-58 (200)
343 1via_A Shikimate kinase; struc 96.4 0.0017 5.7E-08 64.7 4.0 30 710-739 6-35 (175)
344 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0011 3.6E-08 73.7 2.7 81 379-466 160-250 (330)
345 3cm0_A Adenylate kinase; ATP-b 96.4 0.0018 6.1E-08 64.9 4.1 30 397-426 4-33 (186)
346 1zuh_A Shikimate kinase; alpha 96.4 0.0017 5.8E-08 64.0 3.9 31 398-428 8-38 (168)
347 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0047 1.6E-07 65.9 7.6 38 708-745 4-44 (260)
348 3cm0_A Adenylate kinase; ATP-b 96.4 0.0014 4.8E-08 65.6 3.2 33 707-739 3-35 (186)
349 3thx_A DNA mismatch repair pro 96.4 0.0058 2E-07 76.5 9.3 28 703-730 657-684 (934)
350 1knq_A Gluconate kinase; ALFA/ 96.4 0.0019 6.6E-08 64.0 4.1 32 707-738 7-38 (175)
351 2jeo_A Uridine-cytidine kinase 96.4 0.0018 6.3E-08 68.3 4.1 29 395-423 23-51 (245)
352 1htw_A HI0065; nucleotide-bind 96.4 0.0018 6.3E-08 63.9 3.8 31 702-732 27-57 (158)
353 2iyv_A Shikimate kinase, SK; t 96.4 0.0019 6.5E-08 64.6 4.0 32 709-740 3-34 (184)
354 1gvn_B Zeta; postsegregational 96.4 0.0044 1.5E-07 67.2 7.1 37 708-744 33-69 (287)
355 1vma_A Cell division protein F 96.4 0.011 3.8E-07 64.7 10.4 37 394-430 101-140 (306)
356 3t61_A Gluconokinase; PSI-biol 96.4 0.0026 9E-08 64.8 5.0 30 398-427 19-48 (202)
357 2zr9_A Protein RECA, recombina 96.4 0.0062 2.1E-07 68.0 8.4 76 395-470 59-153 (349)
358 3b9q_A Chloroplast SRP recepto 96.4 0.0034 1.2E-07 68.7 6.2 34 389-422 92-125 (302)
359 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 65.0 4.6 34 395-428 18-51 (201)
360 1aky_A Adenylate kinase; ATP:A 96.3 0.0027 9.3E-08 65.7 5.0 32 396-427 3-34 (220)
361 3uie_A Adenylyl-sulfate kinase 96.3 0.0043 1.5E-07 63.2 6.3 40 705-744 22-64 (200)
362 2ze6_A Isopentenyl transferase 96.3 0.0023 7.8E-08 68.1 4.4 32 399-430 3-34 (253)
363 3asz_A Uridine kinase; cytidin 96.3 0.0027 9.4E-08 65.0 4.9 35 396-430 5-39 (211)
364 1z6g_A Guanylate kinase; struc 96.3 0.002 6.7E-08 67.0 3.7 29 393-421 19-47 (218)
365 2ze6_A Isopentenyl transferase 96.3 0.0022 7.6E-08 68.2 4.2 32 710-741 3-34 (253)
366 1znw_A Guanylate kinase, GMP k 96.3 0.0021 7.2E-08 66.0 3.8 29 394-422 17-45 (207)
367 1tf7_A KAIC; homohexamer, hexa 96.3 0.011 3.7E-07 69.8 10.5 117 701-826 31-188 (525)
368 1g5t_A COB(I)alamin adenosyltr 96.3 0.018 6.2E-07 58.6 10.6 109 708-832 28-169 (196)
369 2c95_A Adenylate kinase 1; tra 96.3 0.0023 7.9E-08 64.4 4.1 32 397-428 9-40 (196)
370 2pez_A Bifunctional 3'-phospho 96.3 0.0035 1.2E-07 62.5 5.2 35 396-430 4-41 (179)
371 2c95_A Adenylate kinase 1; tra 96.3 0.0019 6.5E-08 65.1 3.3 35 706-740 7-41 (196)
372 2ewv_A Twitching motility prot 96.3 0.0014 4.9E-08 73.9 2.6 72 395-466 134-219 (372)
373 3t61_A Gluconokinase; PSI-biol 96.3 0.0029 9.9E-08 64.4 4.7 32 708-739 18-49 (202)
374 1u0j_A DNA replication protein 96.3 0.003 1E-07 67.5 4.9 33 397-430 104-136 (267)
375 2iut_A DNA translocase FTSK; n 96.3 0.021 7.1E-07 67.4 12.4 73 769-855 345-419 (574)
376 2b8t_A Thymidine kinase; deoxy 96.3 0.009 3.1E-07 62.3 8.4 71 708-779 12-101 (223)
377 3tr0_A Guanylate kinase, GMP k 96.2 0.0024 8.3E-08 64.9 4.0 27 396-422 6-32 (205)
378 1zuh_A Shikimate kinase; alpha 96.2 0.0024 8.2E-08 63.0 3.8 32 709-740 8-39 (168)
379 2cdn_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 64.7 4.2 32 708-739 20-51 (201)
380 1tev_A UMP-CMP kinase; ploop, 96.2 0.0032 1.1E-07 63.2 4.7 30 398-427 4-33 (196)
381 1cke_A CK, MSSA, protein (cyti 96.2 0.0031 1.1E-07 65.2 4.8 29 398-426 6-34 (227)
382 1aky_A Adenylate kinase; ATP:A 96.2 0.0025 8.4E-08 66.0 4.0 33 707-739 3-35 (220)
383 2og2_A Putative signal recogni 96.2 0.0044 1.5E-07 69.4 6.2 34 389-422 149-182 (359)
384 3lw7_A Adenylate kinase relate 96.2 0.0022 7.5E-08 62.9 3.4 29 399-428 3-31 (179)
385 2oap_1 GSPE-2, type II secreti 96.2 0.0027 9.3E-08 74.5 4.6 74 704-777 256-343 (511)
386 4f4c_A Multidrug resistance pr 96.2 0.0015 5.3E-08 85.2 2.7 45 386-430 433-477 (1321)
387 1e6c_A Shikimate kinase; phosp 96.2 0.0033 1.1E-07 62.0 4.5 29 399-427 4-32 (173)
388 2yhs_A FTSY, cell division pro 96.2 0.0049 1.7E-07 71.4 6.5 46 377-422 273-318 (503)
389 1z6t_A APAF-1, apoptotic prote 96.2 0.024 8E-07 67.6 12.6 23 708-730 147-169 (591)
390 3ux8_A Excinuclease ABC, A sub 96.2 0.0021 7.2E-08 78.2 3.5 32 387-418 338-369 (670)
391 1cke_A CK, MSSA, protein (cyti 96.2 0.0031 1.1E-07 65.2 4.3 31 708-738 5-35 (227)
392 1zd8_A GTP:AMP phosphotransfer 96.1 0.0026 8.7E-08 66.2 3.6 33 707-739 6-38 (227)
393 1tev_A UMP-CMP kinase; ploop, 96.1 0.0025 8.5E-08 64.0 3.4 32 708-739 3-34 (196)
394 3lw7_A Adenylate kinase relate 96.1 0.0025 8.5E-08 62.5 3.4 29 710-739 3-31 (179)
395 3crm_A TRNA delta(2)-isopenten 96.1 0.002 6.9E-08 70.9 2.9 36 709-744 6-41 (323)
396 1xp8_A RECA protein, recombina 96.1 0.017 5.9E-07 64.8 10.6 76 395-470 72-166 (366)
397 2bbw_A Adenylate kinase 4, AK4 96.1 0.0033 1.1E-07 66.3 4.4 30 397-426 27-56 (246)
398 2pez_A Bifunctional 3'-phospho 96.1 0.0032 1.1E-07 62.8 4.1 38 707-744 4-44 (179)
399 4e22_A Cytidylate kinase; P-lo 96.1 0.004 1.4E-07 66.1 5.0 30 397-426 27-56 (252)
400 2bwj_A Adenylate kinase 5; pho 96.1 0.0029 1E-07 63.8 3.8 31 398-428 13-43 (199)
401 3lda_A DNA repair protein RAD5 96.1 0.009 3.1E-07 67.9 8.1 77 394-470 175-287 (400)
402 2if2_A Dephospho-COA kinase; a 96.1 0.0025 8.5E-08 64.9 3.2 29 399-428 3-31 (204)
403 1kht_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 62.8 4.1 25 398-422 4-28 (192)
404 2zts_A Putative uncharacterize 96.1 0.011 3.6E-07 61.8 8.1 28 703-730 25-52 (251)
405 3be4_A Adenylate kinase; malar 96.1 0.0029 9.8E-08 65.5 3.6 32 708-739 5-36 (217)
406 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0025 8.7E-08 70.8 3.3 48 375-427 7-54 (359)
407 2v9p_A Replication protein E1; 96.1 0.0044 1.5E-07 67.8 5.2 28 394-421 123-150 (305)
408 2vli_A Antibiotic resistance p 96.1 0.0028 9.7E-08 63.1 3.4 29 398-426 6-34 (183)
409 3fb4_A Adenylate kinase; psych 96.1 0.0031 1E-07 64.9 3.7 30 399-428 2-31 (216)
410 3umf_A Adenylate kinase; rossm 96.1 0.0034 1.1E-07 65.3 4.0 36 704-739 25-60 (217)
411 2bbw_A Adenylate kinase 4, AK4 96.1 0.0035 1.2E-07 66.1 4.3 32 707-738 26-57 (246)
412 2pt5_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 61.8 3.8 29 399-427 2-30 (168)
413 1ly1_A Polynucleotide kinase; 96.1 0.0029 9.9E-08 62.7 3.3 25 398-422 3-28 (181)
414 2vli_A Antibiotic resistance p 96.1 0.003 1E-07 62.9 3.5 30 708-737 5-34 (183)
415 3nwj_A ATSK2; P loop, shikimat 96.0 0.0027 9.3E-08 67.5 3.3 37 703-739 40-79 (250)
416 3dl0_A Adenylate kinase; phosp 96.0 0.0033 1.1E-07 64.7 3.8 30 710-739 2-31 (216)
417 3dl0_A Adenylate kinase; phosp 96.0 0.003 1E-07 65.0 3.5 30 399-428 2-31 (216)
418 1qf9_A UMP/CMP kinase, protein 96.0 0.0049 1.7E-07 61.6 5.0 32 397-428 6-37 (194)
419 1wb9_A DNA mismatch repair pro 96.0 0.015 5.2E-07 71.7 10.3 26 706-731 605-630 (800)
420 2ius_A DNA translocase FTSK; n 96.0 0.0089 3.1E-07 69.8 7.8 75 768-856 297-374 (512)
421 1e6c_A Shikimate kinase; phosp 96.0 0.0031 1.1E-07 62.2 3.4 31 709-739 3-33 (173)
422 2bwj_A Adenylate kinase 5; pho 96.0 0.0019 6.5E-08 65.3 1.9 33 707-739 11-43 (199)
423 2iut_A DNA translocase FTSK; n 96.0 0.056 1.9E-06 63.7 14.4 43 521-563 376-420 (574)
424 3a00_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 63.2 3.6 26 398-423 2-27 (186)
425 3e1s_A Exodeoxyribonuclease V, 96.0 0.0068 2.3E-07 72.2 6.8 98 708-822 204-317 (574)
426 1ukz_A Uridylate kinase; trans 96.0 0.0042 1.4E-07 63.2 4.3 32 397-428 15-46 (203)
427 3tr0_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 63.7 3.7 29 705-733 4-32 (205)
428 3umf_A Adenylate kinase; rossm 96.0 0.0052 1.8E-07 63.9 5.0 32 395-426 27-58 (217)
429 2r6a_A DNAB helicase, replicat 96.0 0.022 7.6E-07 65.8 10.9 38 703-740 198-239 (454)
430 3fb4_A Adenylate kinase; psych 96.0 0.0035 1.2E-07 64.4 3.7 30 710-739 2-31 (216)
431 1kht_A Adenylate kinase; phosp 96.0 0.0034 1.2E-07 62.8 3.5 26 708-733 3-28 (192)
432 1pzn_A RAD51, DNA repair and r 96.0 0.014 4.7E-07 65.2 8.7 39 394-432 128-175 (349)
433 1ak2_A Adenylate kinase isoenz 96.0 0.0055 1.9E-07 64.1 5.2 31 397-427 16-46 (233)
434 1zd8_A GTP:AMP phosphotransfer 96.0 0.0034 1.2E-07 65.3 3.6 32 397-428 7-38 (227)
435 1jjv_A Dephospho-COA kinase; P 96.0 0.0035 1.2E-07 64.0 3.5 28 399-427 4-31 (206)
436 3tlx_A Adenylate kinase 2; str 95.9 0.0041 1.4E-07 65.6 4.2 33 396-428 28-60 (243)
437 1tf7_A KAIC; homohexamer, hexa 95.9 0.019 6.6E-07 67.6 10.3 112 702-823 275-417 (525)
438 1zc1_A Ubiquitin fusion degrad 95.9 0.1 3.6E-06 53.0 14.1 139 95-341 47-190 (208)
439 1zak_A Adenylate kinase; ATP:A 95.9 0.0033 1.1E-07 65.1 3.3 32 708-739 5-36 (222)
440 1lvg_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 63.8 3.6 27 396-422 3-29 (198)
441 1znw_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 64.1 3.6 30 704-733 16-45 (207)
442 1ak2_A Adenylate kinase isoenz 95.9 0.0043 1.5E-07 64.9 4.1 32 708-739 16-47 (233)
443 3tlx_A Adenylate kinase 2; str 95.9 0.0039 1.3E-07 65.8 3.8 35 705-739 26-60 (243)
444 1kgd_A CASK, peripheral plasma 95.9 0.0046 1.6E-07 62.0 4.0 26 397-422 5-30 (180)
445 3io5_A Recombination and repai 95.9 0.018 6.1E-07 63.0 8.8 74 395-470 27-125 (333)
446 2pt5_A Shikimate kinase, SK; a 95.9 0.0042 1.5E-07 60.9 3.6 30 710-739 2-31 (168)
447 1s96_A Guanylate kinase, GMP k 95.9 0.0043 1.5E-07 64.6 3.9 30 394-423 13-42 (219)
448 1vma_A Cell division protein F 95.9 0.011 3.9E-07 64.6 7.3 72 706-777 102-196 (306)
449 3lnc_A Guanylate kinase, GMP k 95.9 0.0025 8.6E-08 66.5 2.0 34 389-422 19-53 (231)
450 1z6g_A Guanylate kinase; struc 95.8 0.0043 1.5E-07 64.4 3.6 30 703-732 18-47 (218)
451 3sfz_A APAF-1, apoptotic pepti 95.8 0.041 1.4E-06 71.1 13.7 144 708-881 147-320 (1249)
452 1zak_A Adenylate kinase; ATP:A 95.8 0.0047 1.6E-07 63.9 3.9 30 397-426 5-34 (222)
453 2ius_A DNA translocase FTSK; n 95.8 0.088 3E-06 61.5 15.0 42 522-563 331-374 (512)
454 3be4_A Adenylate kinase; malar 95.8 0.0061 2.1E-07 63.0 4.7 31 398-428 6-36 (217)
455 3sr0_A Adenylate kinase; phosp 95.8 0.0058 2E-07 63.0 4.5 27 400-426 3-29 (206)
456 2jaq_A Deoxyguanosine kinase; 95.8 0.0055 1.9E-07 62.0 4.2 28 399-426 2-29 (205)
457 1qf9_A UMP/CMP kinase, protein 95.8 0.0048 1.6E-07 61.7 3.7 32 708-739 6-37 (194)
458 2if2_A Dephospho-COA kinase; a 95.8 0.0041 1.4E-07 63.3 3.3 30 710-740 3-32 (204)
459 3sr0_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 63.6 3.9 30 710-739 2-31 (206)
460 2fz4_A DNA repair protein RAD2 95.8 0.019 6.5E-07 60.3 8.5 73 708-780 108-205 (237)
461 1ukz_A Uridylate kinase; trans 95.8 0.0048 1.6E-07 62.7 3.8 33 708-740 15-47 (203)
462 1ly1_A Polynucleotide kinase; 95.8 0.0036 1.2E-07 62.0 2.7 30 709-738 3-33 (181)
463 2pbr_A DTMP kinase, thymidylat 95.8 0.0071 2.4E-07 60.6 4.9 30 400-429 3-35 (195)
464 1lvg_A Guanylate kinase, GMP k 95.8 0.0042 1.4E-07 63.4 3.3 28 706-733 2-29 (198)
465 2z0h_A DTMP kinase, thymidylat 95.8 0.012 4.1E-07 59.1 6.7 31 400-430 3-36 (197)
466 3c8u_A Fructokinase; YP_612366 95.8 0.004 1.4E-07 63.9 3.1 28 706-733 20-47 (208)
467 2bdt_A BH3686; alpha-beta prot 95.8 0.0043 1.5E-07 62.4 3.3 25 398-422 3-27 (189)
468 2j41_A Guanylate kinase; GMP, 95.8 0.0051 1.8E-07 62.4 3.9 29 395-423 4-32 (207)
469 1m7g_A Adenylylsulfate kinase; 95.8 0.012 4.1E-07 60.4 6.7 40 705-744 22-65 (211)
470 2v54_A DTMP kinase, thymidylat 95.8 0.0054 1.8E-07 62.2 3.9 34 707-740 3-37 (204)
471 2z43_A DNA repair and recombin 95.7 0.016 5.6E-07 63.8 8.1 77 394-470 104-217 (324)
472 2dpy_A FLII, flagellum-specifi 95.7 0.01 3.5E-07 68.3 6.6 39 385-430 152-190 (438)
473 4e22_A Cytidylate kinase; P-lo 95.7 0.0062 2.1E-07 64.6 4.4 33 706-738 25-57 (252)
474 2v9p_A Replication protein E1; 95.7 0.0054 1.8E-07 67.1 3.9 36 701-736 119-154 (305)
475 1v5w_A DMC1, meiotic recombina 95.7 0.022 7.6E-07 63.3 9.0 39 394-432 119-166 (343)
476 3qf4_A ABC transporter, ATP-bi 95.7 0.024 8.1E-07 67.8 9.8 32 702-733 363-394 (587)
477 2i3b_A HCR-ntpase, human cance 95.7 0.0057 1.9E-07 62.2 3.8 24 398-421 2-25 (189)
478 1e4v_A Adenylate kinase; trans 95.7 0.0071 2.4E-07 62.2 4.6 30 399-428 2-31 (214)
479 2obl_A ESCN; ATPase, hydrolase 95.7 0.0085 2.9E-07 66.8 5.5 38 385-429 66-103 (347)
480 1kgd_A CASK, peripheral plasma 95.7 0.0057 1.9E-07 61.3 3.7 27 707-733 4-30 (180)
481 3tif_A Uncharacterized ABC tra 95.7 0.0032 1.1E-07 66.3 1.9 33 702-734 25-57 (235)
482 2yvu_A Probable adenylyl-sulfa 95.7 0.02 7E-07 57.2 7.8 70 705-774 10-91 (186)
483 1jjv_A Dephospho-COA kinase; P 95.7 0.0057 1.9E-07 62.4 3.7 28 710-738 4-31 (206)
484 4a82_A Cystic fibrosis transme 95.7 0.0083 2.9E-07 71.6 5.7 32 702-733 361-392 (578)
485 3tau_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 62.8 3.7 28 396-423 7-34 (208)
486 3qf4_B Uncharacterized ABC tra 95.6 0.015 5.1E-07 69.7 7.8 32 702-733 375-406 (598)
487 1e4v_A Adenylate kinase; trans 95.6 0.0059 2E-07 62.8 3.7 30 710-739 2-31 (214)
488 2gza_A Type IV secretion syste 95.6 0.0068 2.3E-07 68.0 4.5 77 701-777 168-262 (361)
489 3asz_A Uridine kinase; cytidin 95.6 0.0052 1.8E-07 62.9 3.3 28 706-733 4-31 (211)
490 2pcj_A ABC transporter, lipopr 95.6 0.0029 1E-07 66.1 1.3 31 703-733 25-55 (224)
491 3b60_A Lipid A export ATP-bind 95.6 0.016 5.4E-07 69.3 7.8 32 702-733 363-394 (582)
492 3r20_A Cytidylate kinase; stru 95.6 0.0086 2.9E-07 62.9 4.9 30 398-427 10-39 (233)
493 4f4c_A Multidrug resistance pr 95.6 0.02 7E-07 74.7 9.4 32 702-733 438-469 (1321)
494 3upu_A ATP-dependent DNA helic 95.6 0.015 5.3E-07 67.2 7.4 23 710-732 47-69 (459)
495 1p9r_A General secretion pathw 95.6 0.016 5.6E-07 66.1 7.4 71 706-776 165-245 (418)
496 3b85_A Phosphate starvation-in 95.6 0.0046 1.6E-07 63.8 2.6 22 399-420 24-45 (208)
497 2jeo_A Uridine-cytidine kinase 95.6 0.0059 2E-07 64.4 3.5 32 704-735 21-52 (245)
498 2px0_A Flagellar biosynthesis 95.6 0.039 1.3E-06 60.0 10.1 100 706-820 103-223 (296)
499 2xb4_A Adenylate kinase; ATP-b 95.6 0.0082 2.8E-07 62.4 4.5 28 400-427 3-30 (223)
500 3thx_B DNA mismatch repair pro 95.6 0.019 6.5E-07 71.7 8.4 28 393-420 669-696 (918)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-107 Score=994.79 Aligned_cols=738 Identities=32% Similarity=0.515 Sum_probs=545.6
Q ss_pred CCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCC
Q 002159 66 LQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGD 145 (958)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~ 145 (958)
.+++|+||+.++.| +++.|+++..||++.|.|+..+|++|||+.||+|.|+|.. ++.++|++..+.
T Consensus 10 ~~~~~~~~~~~~~~-~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~---~~~~~~~~~~~~---------- 75 (806)
T 3cf2_A 10 DDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD---------- 75 (806)
T ss_dssp -----------CCT-TEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGG---GCBCCEEEEECT----------
T ss_pred CCchhhhhhccCCC-ceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCC---CceEEEEEcCCC----------
Confidence 48999999999999 9999999999999999999999999999999999999766 777888876554
Q ss_pred CccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCce
Q 002159 146 VHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASL 225 (958)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (958)
.+..+++.|+..++.|+++..|+
T Consensus 76 ------------------------~~~~~~i~~~~~~r~n~~v~~gd--------------------------------- 98 (806)
T 3cf2_A 76 ------------------------TCSDEKIRMNRVVRNNLRVRLGD--------------------------------- 98 (806)
T ss_dssp ------------------------TSBTTBCEECHHHHHTTTCCTTC---------------------------------
T ss_pred ------------------------CCCCCEEEeCHHHHHhcCCCCCC---------------------------------
Confidence 34567889999999999999975
Q ss_pred eEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCC
Q 002159 226 IKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSS 304 (958)
Q Consensus 226 ~~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~~ 304 (958)
.|+|.|+.++ ++|+.+.+ .|..++++++.++ .++.+|++||. ..|+|.+||+|.|+.
T Consensus 99 -~V~v~~~~~~-~~a~~v~l----~p~~~~~~~~~~~----------~~~~~l~~~~~~~~~~v~~gd~~~v~~------ 156 (806)
T 3cf2_A 99 -VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRG------ 156 (806)
T ss_dssp -EEEEEECCCC-CBCSBEEE----EEBTTTSTTCCSC----------HHHHTHHHHHTTTCCEEETTCEEEECC------
T ss_pred -EEEEEECCCC-CcCCEEEE----eccccchhccchh----------HHHHHHHHHHHhcCCcccCCCEEEEec------
Confidence 6888998876 68986544 7888888888777 89999999996 689999999999975
Q ss_pred ccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcCCCCCCCCC--CcccccCCCCcCCchHHHHHHHHH
Q 002159 305 MICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSALPP--DLLISGSNDFVPLQGDTVKILASI 382 (958)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~k~L~~i 382 (958)
.+..+.|+|++++|.+. ++| ...|.+...+......+. ...-..+++.++++....+....+
T Consensus 157 -------------~~~~~~f~V~~~~P~~~--~~v-~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v 220 (806)
T 3cf2_A 157 -------------GMRAVEFKVVETDPSPY--CIV-APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMV 220 (806)
T ss_dssp -------------TTSCEEEEEEEESSSSE--EEC-CTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHH
T ss_pred -------------CCcEEEEEEEEEeCCCC--eEE-CCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHH
Confidence 35679999999999653 333 345666555432111110 001112456777776554555555
Q ss_pred HhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeE
Q 002159 383 LAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTI 459 (958)
Q Consensus 383 i~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~I 459 (958)
..|+.+|..| +.+++++||||||||||||+|||++|+++|.+++.++|+++++++.|+++..++.+|+.|+.++|||
T Consensus 221 ~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp HHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred HHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeE
Confidence 6889999877 4688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChh
Q 002159 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPT 539 (958)
Q Consensus 460 L~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~a 539 (958)
|||||+|+|+++++..+ ......+ +.+++ ..+++...+.+|+||||||+++.||++
T Consensus 301 IfIDEiDal~~~r~~~~-----~~~~~ri---v~~LL----------------~~mdg~~~~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTH-----GEVERRI---VSQLL----------------TLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp EEEESGGGTCCTTTTCC-----CTTHHHH---HHHHH----------------THHHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred EEEehhcccccccCCCC-----ChHHHHH---HHHHH----------------HHHhcccccCCEEEEEecCChhhcCHH
Confidence 99999999998653221 1111222 22322 233444446789999999999999999
Q ss_pred hhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccc
Q 002159 540 IRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617 (958)
Q Consensus 540 lrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~ 617 (958)
++| ||+++|+++.||+.+|.+|++.++++... ..|++ +..+|.+|+||+++||..||++|++.++++.....+
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 999 99999999999999999999999987653 34444 688999999999999999999999999987654332
Q ss_pred cCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccc
Q 002159 618 KNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLH 697 (958)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~ 697 (958)
..... ..........++++||..|+...++... .....+.|+++|+++||++++|+.+.+.+.+|+.+
T Consensus 432 ~~~~~-----------~~~e~~~~~~v~~~Df~~Al~~~~ps~~-r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~ 499 (806)
T 3cf2_A 432 LEDET-----------IDAEVMNSLAVTMDDFRWALSQSNPSAL-RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499 (806)
T ss_dssp GTCCC-----------CSHHHHHHCEECTTHHHHHHSSSSCCCC-CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTC
T ss_pred ccccc-----------cchhhhccceeeHHHHHHHHHhCCCccc-ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhC
Confidence 22111 1111223567889999999987754221 22356789999999999999999999999999999
Q ss_pred hhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEccc
Q 002159 698 KDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDEL 776 (958)
Q Consensus 698 ~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEi 776 (958)
++.|. .++.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++|++++++|+.|+..+||||||||+
T Consensus 500 p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp SGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred HHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhh
Confidence 99997 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHH
Q 002159 777 DSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 855 (958)
Q Consensus 777 D~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il 855 (958)
|+++++|+.. ++.++..+|++++||++|||+.. ..+|+||||||+|+.||||++||||||+.|||++ ||.++|.+||
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~l-Pd~~~R~~il 657 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAIL 657 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC------CHHHHTT
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECC-cCHHHHHHHH
Confidence 9999999753 44556788999999999999965 5789999999999999999999999999999998 8999999999
Q ss_pred HHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCC--------ccccccCCcccccHHHH
Q 002159 856 KALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSD--------SSRIDQADSVVVEYDDF 927 (958)
Q Consensus 856 ~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~--------~~~~~~~~~~~i~~~df 927 (958)
+.++++.++..++|++.||+. |+|||||||.++|++|++.|+++.+........ .........+.|+++||
T Consensus 658 ~~~l~~~~~~~~~dl~~la~~-t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df 736 (806)
T 3cf2_A 658 KANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTSSCC--CCC-----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CC
T ss_pred HHHhcCCCCCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHH
Confidence 999999999999999999999 599999999999999999999998764321100 01111222357999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhhcC
Q 002159 928 VKVLRELSPSLSMAELKKYELLRDQFEGS 956 (958)
Q Consensus 928 ~~al~~~~ps~s~~~l~~y~~~~~~~~~~ 956 (958)
++|+++++||+|++++++|++|+++|+++
T Consensus 737 ~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp TTTC---------------CCCC------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999753
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.2e-80 Score=764.33 Aligned_cols=738 Identities=32% Similarity=0.516 Sum_probs=549.6
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002159 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (958)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~ 144 (958)
+.+++++||+.++.| +++.|+++..+|...|.++..+|.+|||+.||.|.|+|.. .+.+.+.|..+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------- 75 (806)
T 1ypw_A 9 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (806)
T ss_dssp --------CCCCCCT-TEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETT---TEECCEEEEECS---------
T ss_pred ccccchhHHhccCCC-ceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCc---cCcEEEEEecCC---------
Confidence 368999999999988 9999999999999999999999999999999999999865 456666665322
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002159 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (958)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (958)
..+.+++.|.-.++.|+|+..|+
T Consensus 76 -------------------------~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 98 (806)
T 1ypw_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (806)
T ss_dssp -------------------------SSCTTEEECCHHHHTTTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCeEEecHHHHhhcCCCCCC--------------------------------
Confidence 23558899999999999999985
Q ss_pred eeEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002159 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (958)
Q Consensus 225 ~~~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~ 303 (958)
.|+|.|+.++ ++|++ |++ .|..+++.++.++ +++.+|++||. .+|||.+||+|.+..
T Consensus 99 --~v~~~~~~~~-~~~~~--~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~----- 156 (806)
T 1ypw_A 99 --VISIQPCPDV-KYGKR--IHV--LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRG----- 156 (806)
T ss_dssp --EEEEEECTTC-CBCSE--EEE--EECTTTSSSCCSC----------CTTTTTGGGTTTTCCBCCTTCEEEECC-----
T ss_pred --EEEEEECCCC-CcCcE--EEE--eCCccchhhcccc----------hHHHHHHHHhccCCccccCCCEEEecC-----
Confidence 6888998665 68986 444 6777888777776 77889999997 589999999998874
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcCCCCCC--CCCCcccccCCCCcCCchHHHHHHHH
Q 002159 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSA--LPPDLLISGSNDFVPLQGDTVKILAS 381 (958)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~k~L~~ 381 (958)
.+..+.|+|++++|.+... +. ..|.+...+..... ......-..+++.++......+....
T Consensus 157 --------------~~~~~~~~v~~~~p~~~~~--v~-~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~ 219 (806)
T 1ypw_A 157 --------------GMRAVEFKVVETDPSPYCI--VA-PDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEM 219 (806)
T ss_dssp --------------SSSCEEEEEEEETTTTCCB--CC-SSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHH
T ss_pred --------------CCcceEEEEEeccCCCCce--ec-CCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHH
Confidence 3578999999999965332 22 33544444322111 00000011234556666544445555
Q ss_pred HHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCe
Q 002159 382 ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458 (958)
Q Consensus 382 ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~ 458 (958)
+..|+.+|..+ .+..+.+|||+|||||||||+++++|++++.+++.++|.++.+.+.++.+..++.+|+.+....|+
T Consensus 220 i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp HHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCc
Confidence 56778888765 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCCh
Q 002159 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP 538 (958)
Q Consensus 459 IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~ 538 (958)
++|+||+|.+...+... .......+...+..++ .+...+..+++|++||+++.+++
T Consensus 300 il~iDEid~l~~~~~~~-----~~~~~~~~~~~Ll~ll-------------------~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKT-----HGEVERRIVSQLLTLM-------------------DGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp EEEEESGGGTSCTTSCC-----CSHHHHHHHHHHHHHH-------------------HSSCTTSCCEEEEECSCTTTSCT
T ss_pred EEEeccHHHhhhccccc-----cchHHHHHHHHHHHHh-------------------hhhcccccEEEecccCCchhcCH
Confidence 99999999998743211 1112223333222222 12223578999999999999999
Q ss_pred hhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccc
Q 002159 539 TIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEV 616 (958)
Q Consensus 539 alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~ 616 (958)
++++ ||.+++.++.|+.++|.+|++.++.+... ..+.. +..++..++||+++|+..++.++.+.++++.....
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~----l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCC----THHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccch----hHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 9998 89999999999999999999999877543 33333 57799999999999999999999988877543211
Q ss_pred ccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeecccc
Q 002159 617 DKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLL 696 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~ 696 (958)
.. . .. ...........++.+++..++....... ......+.|.+.|++++|++.+|+.+.+.+.+++.
T Consensus 431 ~~-----~---~~---~~~~~~~~~~~v~~~d~~~al~~~~~s~-~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~ 498 (806)
T 1ypw_A 431 DL-----E---DE---TIDAEVMNSLAVTMDDFRWALSQSNPSA-LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVE 498 (806)
T ss_dssp SC-----H---HH---HCCHHHHTTCCCCTTHHHHHHHHSCCCC-CCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSS
T ss_pred ch-----h---hh---ccchhhhhhhhhhhhhhhccccccCchh-hhhhcccCccccccccccchhhhhhHHHHHHhhhh
Confidence 10 0 00 0011112245677788988887654321 12224567899999999999999999999999999
Q ss_pred chhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcc
Q 002159 697 HKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 775 (958)
Q Consensus 697 ~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDE 775 (958)
+++.+. .++.++.+++|+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||
T Consensus 499 ~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDE 578 (806)
T 1ypw_A 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp SCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSS
T ss_pred chHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEC
Confidence 888776 5888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHH
Q 002159 776 LDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERV 854 (958)
Q Consensus 776 iD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~I 854 (958)
+|++++.|+.. ++..+...+++++||.+||++.. ..+++||+|||+|+.||||++|||||++.|++++ |+.++|..|
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~I 656 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAI 656 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCC-CCCSHHHHH
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc-cCCeEEEEecCCcccCCHHHhCccccCceeecCC-CCHHHHHHH
Confidence 99999888643 22345678999999999999864 5789999999999999999999999999999997 889999999
Q ss_pred HHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCC-----C---ccccccCCcccccHHH
Q 002159 855 LKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNS-----D---SSRIDQADSVVVEYDD 926 (958)
Q Consensus 855 l~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~-----~---~~~~~~~~~~~i~~~d 926 (958)
|+.++++.++..++++..+|+. ++||||+||.++|++|++.|+++.+....... . ...........|+++|
T Consensus 657 l~~~l~~~~~~~~~~l~~la~~-t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 735 (806)
T 1ypw_A 657 LKANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735 (806)
T ss_dssp TTTTTSCC----CCCCSCSCGG-GSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTS
T ss_pred HHHHhccCCCCcccCHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHH
Confidence 9999999999999999999999 59999999999999999999988654311000 0 0001112234799999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 927 FVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 927 f~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
|++|++.++||+|++++++|++|.++|+.
T Consensus 736 f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp SCCCCCC----------------------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999864
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-54 Score=483.81 Aligned_cols=264 Identities=36% Similarity=0.643 Sum_probs=237.7
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|+++|+||||++++|+.+++.+.+|+.+|++|. .|+++++|+|||||||||||+||+|+|++++.+|+.++++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3567999999999999999999999999999999998 599999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.++|+|+++++++++|+.|+..+||||||||+|+++++|+..+.+ .....+++++||++|||+.. ..+|+||+|||+|
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~V~vIaATNrp 297 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET-SKNIKIIMATNRL 297 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC-CCCEEEEEEESCS
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC-CCCeEEEeccCCh
Confidence 999999999999999999999999999999999999998754333 23567899999999999964 5789999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.|||||+||||||+.|+|++ |+.++|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++.
T Consensus 298 d~LDpAllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~-t~G~SGADi~~l~~eA~~~Air~~-- 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPP-PSVAARAEILRIHSRKMNLTRGINLRKVAEK-MNGCSGADVKGVCTEAGMYALRER-- 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCC-CCHHHHHHHHHHHHTTSBCCSSCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred hhCCHhHcCCCcCceEEEcCC-cCHHHHHHHHHHHhcCCCCCccCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999997 8999999999999999999999999999999 599999999999999999999863
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELL 949 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~ 949 (958)
...|+++||+.|++++.|+..+..+..++.|
T Consensus 374 ---------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 374 ---------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp ---------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred ---------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 1358999999999998876666666666555
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-52 Score=471.20 Aligned_cols=258 Identities=36% Similarity=0.647 Sum_probs=238.9
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|+++|+||||++++|+.+.+.+.+|+.+|+.|. .|+++++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 467999999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
++|+|++++.++.+|..|+..+||||||||+|+++++|...+.. .....+++++||++|||+.. ..+|+||+|||+|+
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-~~~ViVIaATNrpd 332 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-RGDVKVIMATNKIE 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-SSSEEEEEEESCST
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-CCCEEEEEeCCChh
Confidence 99999999999999999999999999999999999999754332 33567899999999999864 57899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.|||||+||||||+.|+|++ ||.++|.+||+.+++++++..++|++.||+. |+|||||||.++|++|++.|+++.
T Consensus 333 ~LDpALlRpGRfD~~I~v~l-Pd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~-T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFEN-PDLSTKKKILGIHTSKMNLSEDVNLETLVTT-KDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCC-CCHHHHHHHHHHHHTTSCBCSCCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hcCHHHhcCCceeEEEEcCC-cCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999998 8999999999999999999999999999999 599999999999999999999863
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHH
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELK 944 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~ 944 (958)
...|+++||++|++++.|+.++++++
T Consensus 408 --------------~~~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 408 --------------RMQVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp --------------CSCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred --------------CCccCHHHHHHHHHHHhCCCChhhHH
Confidence 12589999999999999887765543
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-50 Score=465.86 Aligned_cols=262 Identities=33% Similarity=0.603 Sum_probs=236.1
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|+++|+||||++++|+.+.+.+.+|+.+|++|. .|+++++|+|||||||||||+||+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 357999999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC-CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~-~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
++|+|++++.++.+|..|+..+||||||||+|+++++|...+. ......+++++||++|||+.. ..+|+||+|||+|+
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-LGQTKIIMATNRPD 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-TTSSEEEEEESSTT
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-CCCeEEEEecCCch
Confidence 9999999999999999999999999999999999999865433 234567899999999999964 57899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.|||||+||||||+.|+||+ |+.++|..||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++..
T Consensus 332 ~LDpAllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~-t~G~sGADi~~l~~eA~~~air~~~-- 407 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPL-PNEAGRLEIFKIHTAKVKKTGEFDFEAAVKM-SDGFNGADIRNCATEAGFFAIRDDR-- 407 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCC-CCHHHHHHHHHHHHHTSCBCSCCCHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhCHHHhCCCccceeeecCC-cCHHHHHHHHHHHhcCCCCCcccCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 99999999999999999997 8999999999999999999999999999999 6999999999999999999997631
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYEL 948 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~ 948 (958)
..|+++||.+|++++.|+...+....|++
T Consensus 408 ---------------~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 408 ---------------DHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp ---------------SSBCHHHHHHHHHHHHHTCC---------
T ss_pred ---------------CCCCHHHHHHHHHHHHhccCcccchhhhc
Confidence 25899999999999999887766666654
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-51 Score=463.76 Aligned_cols=263 Identities=33% Similarity=0.648 Sum_probs=233.9
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|+++|+||||++++|+.|.+.+.+|+.+|+.|. .|+++++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 467999999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
++|+|++++.++.+|..|+..+||||||||+|+++++|+..+.+ .....++++++|++|||... ..+|+||+|||+|+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~ViVIaATNrpd 359 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP-RGNIKVMFATNRPN 359 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-TTTEEEEEECSCTT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999998754432 23456889999999999864 57899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.|||||+||||||+.|+|++ |+.++|.+||+.+++++++..+++++.||+. |+|||||||.++|++|++.|+++..
T Consensus 360 ~LDpALlRpGRFD~~I~i~l-Pd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~-T~GfSGADI~~l~~eAa~~Air~~~-- 435 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSL-PDLEGRANIFRIHSKSMSVERGIRWELISRL-CPNSTGAELRSVCTEAGMFAIRARR-- 435 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCC-CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred cCChhhhccccccEEEEeCC-cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 99999999999999999998 8999999999999999999999999999999 5999999999999999999998731
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCCCCC-HHHHHHHHHH
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLS-MAELKKYELL 949 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s-~~~l~~y~~~ 949 (958)
..|+++||++|++++.++.. .....+|.+|
T Consensus 436 ---------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 436 ---------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp ---------------SSBCHHHHHHHHHHHHHHHCC----------
T ss_pred ---------------CccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 25899999999999865432 2345566665
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-50 Score=463.17 Aligned_cols=255 Identities=35% Similarity=0.626 Sum_probs=236.7
Q ss_pred CCCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 666 APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 666 ~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..+.|.++|+||||++++|+.+.+.+.+|+.+|+.|. .|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 3467999999999999999999999999999999998 699999999999999999999999999999999999999999
Q ss_pred hhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCc-chHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 745 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~-~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.++|+|++++.++.+|..|+..+||||||||+|+++++|..++.++ ....+++++||++|||+.. ..+|+||||||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~~~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-SCSSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-CCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999999987543322 2456889999999999965 5789999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.|||||+||||||+.|+||+ |+.++|.+||+.+++++++..++++..||+. |+|||||||.++|++|++.|+++..
T Consensus 331 ~~LD~AllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~-t~G~sGADi~~l~~eA~~~a~r~~~- 407 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPL-PSEDSRAQILQIHSRKMTTDDDINWQELARS-TDEFNGAQLKAVTVEAGMIALRNGQ- 407 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCC-CCHHHHHHHHHHHHHHSCBCSCCCHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred hhcCHhHhcCCceeEEEEeCC-cCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 999999999999999999997 8999999999999999999999999999999 5999999999999999999998731
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCH
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSM 940 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~ 940 (958)
..|+++||.+|+++++|+.++
T Consensus 408 ----------------~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 408 ----------------SSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ----------------SSBCHHHHHHHHHSCSSSCCC
T ss_pred ----------------CCcCHHHHHHHHHHHhCCCCc
Confidence 258999999999999998764
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-50 Score=462.43 Aligned_cols=261 Identities=35% Similarity=0.619 Sum_probs=239.6
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|+++|+||||++.+|+.+.+.+.+|+.+|+.|. .|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 467999999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCC-CCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~-~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
++|+|++++.++++|..|+..+||||||||+|+++++|.... ..++...+++++||++|||+.. ..+|+||+|||+|+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-STNVKVIMATNRAD 322 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEEESCSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChh
Confidence 999999999999999999999999999999999999986433 2334678999999999999965 57899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.|||||+||||||+.|+||-+|+.++|..||+.+++++++..++|++.+|+. |+|||||||.++|++|++.|+++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~-t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIR-NDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 9999999999999999997349999999999999999999999999999999 599999999999999999999873
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHH-hCCCCCHHHHHHH
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRE-LSPSLSMAELKKY 946 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~-~~ps~s~~~l~~y 946 (958)
...|+++||++|+.+ ++++.+.++++.|
T Consensus 399 --------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 --------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp --------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred --------------CCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 125899999999976 6888877666555
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-44 Score=439.21 Aligned_cols=281 Identities=38% Similarity=0.663 Sum_probs=247.0
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
..|.++|+||||++++++.+++.+.+|+.+|+.|. .++.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35789999999999999999999999999999998 59999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+|.|+++++++.+|+.|+..+||||||||+|+++++|+... ++...+++++||++||++.. ..+|+||+|||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~-~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCG-GGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccc-cCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999987543 34568999999999999965 4689999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
||||+||||||+.|++++ |+.+.|.+||+.++++.++..++++..+|.+ |+||+|+||.++|++|++.|++|......
T Consensus 354 D~ALrR~GRFd~~I~i~~-Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~-T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp CTTTTSTTSSCEEEECCC-CCHHHHHHHHHHTCSSSEECTTCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHhCCcccceEEecCC-CCHHHHHHHHHHHhcCCCCCcccCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999997 8999999999999999999999999999999 59999999999999999999999875443
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHhCCCC-----------CHHHHHHHHHHHHHh
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLRELSPSL-----------SMAELKKYELLRDQF 953 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~-----------s~~~l~~y~~~~~~~ 953 (958)
........+......|+++||..|++.++||. +++++.-++...+.+
T Consensus 432 ~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l 489 (806)
T 3cf2_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 489 (806)
T ss_dssp GTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHH
T ss_pred ccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHH
Confidence 22111111222345799999999999998764 455554444444443
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=394.61 Aligned_cols=282 Identities=31% Similarity=0.574 Sum_probs=247.9
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-CCceeeeccchhhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELIN 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-~~~~i~v~~~~l~~ 746 (958)
+.|.++|+|++|++.+|+.+.+.+.+|+.+++.|..+..+++++|||||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46889999999999999999999999999999988667778999999999999999999999999 89999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+|.|++++.++.+|..|+..+|+||||||+|.++++|+.. ..+...+++++++.+|+++.....+++||+|||+|+.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999999887653 24567899999999999986556789999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
|++++| ||++.+++++ |+.+.|..|++.++++.+.. .+.++..||+. |+||||+||.++|++|++.|+++.....
T Consensus 163 d~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~-t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 163 DSAIRR--RFEKRIYIPL-PEPHARAAMFKLHLGTTQNSLTEADFRELGRK-TDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp CHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHT-CTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred CHHHHh--hcCeEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999 9999999997 89999999999999887653 67889999999 5999999999999999999999976431
Q ss_pred CC-------C-C----------------Cc-------c-ccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 002159 906 DS-------N-S----------------DS-------S-RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQF 953 (958)
Q Consensus 906 ~~-------~-~----------------~~-------~-~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~ 953 (958)
.. . . .. . ..+.....+|+++||++|+++++||+|++++++|++|.++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 318 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDF 318 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTT
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 00 0 0 00 0 00111234799999999999999999999999999999999
Q ss_pred hc
Q 002159 954 EG 955 (958)
Q Consensus 954 ~~ 955 (958)
..
T Consensus 319 ~~ 320 (322)
T 1xwi_A 319 GQ 320 (322)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=385.25 Aligned_cols=285 Identities=48% Similarity=0.835 Sum_probs=249.3
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|.++|++++|++.+++.+.+.+.+|+.+++.|. .++.++.+++||||||||||++|+++|++++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 456889999999999999999999999999999887 5889999999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
++|+|++++.++.+|+.|+...|+||||||+|.+.+.++.. ++.++...+++++||..|+++.. ..+++||+|||+|+
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEESCGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999876532 23334557899999999999864 46899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.||++++|||||++.|++++ |+.++|.+|++.++++.++..++++..++.. ++||+|+||.++|++|++.|+++.+..
T Consensus 166 ~ld~al~r~gRf~~~i~i~~-p~~~~r~~il~~~l~~~~~~~~~~~~~la~~-~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHhcCCccceEEecCC-cCHHHHHHHHHHHHccCCCCccchHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999997 8899999999999999988889999999998 699999999999999999999987643
Q ss_pred cCCCCC-----cc-cc--ccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 002159 905 SDSNSD-----SS-RI--DQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 954 (958)
Q Consensus 905 ~~~~~~-----~~-~~--~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~ 954 (958)
...... .. .. .......|+++||++|+++++||++++++++|++|+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 211000 00 00 0111247999999999999999999999999999999984
No 12
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.4e-41 Score=394.58 Aligned_cols=468 Identities=22% Similarity=0.339 Sum_probs=331.7
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002159 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (958)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~ 144 (958)
..+++|+||+.++.| |++.|+++..+|.+.|.++.++|.+|||+.||.|.|+|.. +|.+.+.++.+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~---~~~~~~~~~~~~--------- 75 (489)
T 3hu3_A 9 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (489)
T ss_dssp --------CCCCCCT-TEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCc---cCcEEEEEeeCC---------
Confidence 468999999999999 9999999999999999999999999999999999999765 678888886332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002159 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (958)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (958)
.++.+++.|+..++.|+|+..|+
T Consensus 76 -------------------------~~~~~~i~~~~~~r~n~~~~~gd-------------------------------- 98 (489)
T 3hu3_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (489)
T ss_dssp -------------------------TSCTTEEECCHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEecHHHHhhcCCCCCC--------------------------------
Confidence 34668899999999999999985
Q ss_pred eeEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002159 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (958)
Q Consensus 225 ~~~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~ 303 (958)
.|.+.++..+ ++|..++| .|....|+.++.. .||..+|||+. ..+++.+||.+.+..
T Consensus 99 --~v~v~~~~~~-~~a~~v~~----~~~~~av~a~~~g----------a~d~~~Kp~~~~~l~~~~~~~~~~~~~----- 156 (489)
T 3hu3_A 99 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVHG----- 156 (489)
T ss_dssp --EEEEEECTTC-CBCSEEEE----EEBGGGSSSCCSC----------HHHHTHHHHHTTTCEEEETTCEEEEEE-----
T ss_pred --EEEEEECCCC-CccCEEEE----cCCCcccccccch----------hHHHHhHHHHhhcCcccccCCEEEecC-----
Confidence 6888888665 69996544 5777777777765 89999999986 589999999998875
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcCCCCCCC-CCCc-ccccCCCCcCCchHHHHHHHH
Q 002159 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSAL-PPDL-LISGSNDFVPLQGDTVKILAS 381 (958)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~k~L~~ 381 (958)
.++.+.|++...+|.. .+.+. ..|.+...+...... .... .-..+.+.++......+....
T Consensus 157 --------------~~~~~~~~~~~~~~~~--~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~ 219 (489)
T 3hu3_A 157 --------------GMRAVEFKVVETDPSP--YCIVA-PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEM 219 (489)
T ss_dssp --------------TTEEEEEEEEEEESSS--EEEEC-TTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHH
T ss_pred --------------CCceEEEEEEeecCCC--ceEEc-CCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHH
Confidence 3578999999999853 33444 355555544211000 0000 001123345555443333344
Q ss_pred HHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCe
Q 002159 382 ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458 (958)
Q Consensus 382 ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~ 458 (958)
+..+..+|..+ +...+.+|||+||||||||++++++|++++.+++.++|.++.+.+.++.+..++..|+.|....|+
T Consensus 220 i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~ 299 (489)
T 3hu3_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (489)
T ss_dssp THHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCc
Confidence 45666676655 357788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCCh
Q 002159 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP 538 (958)
Q Consensus 459 IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~ 538 (958)
+|||||+|.+.+++.... ......+...|-+++ .+.....+++||+|||+++.+++
T Consensus 300 iLfLDEId~l~~~~~~~~-----~~~~~~~~~~LL~~l-------------------d~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTH-----GEVERRIVSQLLTLM-------------------DGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp EEEEESHHHHCBCTTSCC-----CHHHHHHHHHHHHHH-------------------HHSCTTSCEEEEEEESCGGGBCG
T ss_pred EEEecchhhhcccccccc-----chHHHHHHHHHHHHh-------------------hccccCCceEEEEecCCccccCH
Confidence 999999999987442111 111122222221221 11223568999999999999999
Q ss_pred hhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccc
Q 002159 539 TIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEV 616 (958)
Q Consensus 539 alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~ 616 (958)
++++ ||...+.++.|+.++|.+|++.+++.... ..+. .+..++..+.||+++|+..|+++|++.++++....+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~----~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i 430 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDV----DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchh----hHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 9998 89999999999999999999999876543 2233 368899999999999999999999999988654333
Q ss_pred ccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccc
Q 002159 617 DKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLED 682 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~ 682 (958)
+..... ..........++++||..|+...++... .....+.|+++|+||||...
T Consensus 431 ~~~~~~-----------~~~~~~~~~~vt~edf~~Al~~~~ps~~-re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 431 DLEDET-----------IDAEVMNSLAVTMDDFRWALSQSNPSAL-RETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp CTTCSS-----------CCHHHHHHCCBCHHHHHHHHTSHHHHHH-HGGGC---------------
T ss_pred cccccc-----------cchhhcccCcCCHHHHHHHHHhCCchhh-hcccccCCCCCHHHcCCCcc
Confidence 221111 0111223567899999999998754322 12257889999999999754
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=377.24 Aligned_cols=266 Identities=46% Similarity=0.777 Sum_probs=215.8
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
..|.++|+|+||++++|+.+.+.+.+|+.+++.+. .++..+.|++|+||||||||||+++||++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999999999999998887 58888899999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+|.|+.++.++.+|+.++...||++|+||+|.+++.|+... .+...+++++++.+|+|... ...++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~-~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEA-RQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCS-TTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccc-cCCEEEEeecCChhhC
Confidence 99999999999999999999999999999999987664321 22345789999999999854 5689999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh---ccCCCCcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK---FKLLEDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKV 902 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~---~~~~~d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~ 902 (958)
|||++||||||+.|++++ |+.++|.+||+.+++. .++..++++..+|..+ |+|||||||.++|++|++.|+++.+
T Consensus 160 D~al~r~gRfd~~i~~~~-P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGL-PPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp CHHHHSTTSSCEEEECCS-CCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHhhcCcccCCeEEEeCC-cCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 8999999999999854 4667899999999974 3699999999999999999999875
Q ss_pred cccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHH
Q 002159 903 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAEL 943 (958)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l 943 (958)
..... ........|+++||++|+++++||++++++
T Consensus 239 ~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 239 ARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hhccc------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 43211 111233579999999999999999998875
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.9e-41 Score=378.89 Aligned_cols=284 Identities=31% Similarity=0.594 Sum_probs=245.8
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
.+.|+++|++++|++.+|+.+.+.+.+|+.+++.|..+..++.++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 35688999999999999999999999999999988877778899999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+|+|++++.++.+|..|+...|+||||||+|.+.++++.. ..+...+++++++..|+++.....+++||+|||+|+.|
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhC
Confidence 9999999999999999999999999999999999887543 23456899999999999986556789999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
|++++| ||+..+++++ |+.+.|..|++.++++.+.. .+.++..+|+. ++||+|+||.++|++|++.|+++.....
T Consensus 168 d~al~~--Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~-t~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 168 DSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPCVLTKEDYRTLGAM-TEGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp CHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHT-TTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred CHHHHc--ccCeEEEeCC-CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999 9999999997 89999999999999887643 67789999999 5999999999999999999999976542
Q ss_pred CCCC-----C-------------c--------cccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC
Q 002159 906 DSNS-----D-------------S--------SRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 956 (958)
Q Consensus 906 ~~~~-----~-------------~--------~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~~ 956 (958)
.... . . ...+......|+++||.+|++.++||++.+++++|++|.++|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1000 0 0 001112235799999999999999999999999999999999753
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.2e-41 Score=379.14 Aligned_cols=283 Identities=31% Similarity=0.601 Sum_probs=237.2
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
.+.|.++|++++|++.+++.+.+.+.+|+.+++.|..+..++.++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 45678999999999999999999999999999998877788899999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
+|.|++++.++.+|..|+...|+||||||+|.+.+.|+.. ..+...+++++||..|+++.....+++||+|||+|+.|
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 200 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccC
Confidence 9999999999999999999999999999999999887643 34567899999999999986556789999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
|++++| ||+..+++++ |+.++|..||+.++++.+.. .+.++..||+. |+||+|+||.++|++|++.|+++.....
T Consensus 201 d~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~-t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 201 DSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPSVLTKEDYRTLGAM-TEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp CHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHc--ccCEEEEeCC-cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 9999999997 89999999999999887643 67789999999 5999999999999999999999865321
Q ss_pred C-----CCC------------Cc---------cccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 906 D-----SNS------------DS---------SRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 906 ~-----~~~------------~~---------~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
. ... .. ...+......|+++||.+|++.++||++++++++|++|.++|..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0 000 00 00011223579999999999999999999999999999999964
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.4e-40 Score=385.61 Aligned_cols=283 Identities=31% Similarity=0.580 Sum_probs=238.6
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-CCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-~~~~i~v~~~~l~ 745 (958)
.+.|.++|++++|++.+++.+.+.+.+|+.+++.|..+..++.++|||||||||||+||+++|+++ +.+|+.++++++.
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456889999999999999999999999999998887666778999999999999999999999999 8999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
+.|+|+++..++.+|..++...|+||||||+|.+++.++.. ..+...+++++||..|+++.....+++||+|||+|+.
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 99999999999999999999999999999999999887654 2456789999999999998655678999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
||++++| ||+..+++++ |+.+.|..|++.++++.+. ..+.++..||+. |+||+|+||.++|++|++.|+++.+..
T Consensus 284 ld~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~-t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 284 LDSAIRR--RFEKRIYIPL-PEAHARAAMFRLHLGSTQNSLTEADFQELGRK-TDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp SCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCEECCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cCHHHHh--hcceEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 9999999997 8999999999999987764 367889999999 599999999999999999999997643
Q ss_pred cC-----CCC------------------Cc---------cccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002159 905 SD-----SNS------------------DS---------SRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQ 952 (958)
Q Consensus 905 ~~-----~~~------------------~~---------~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~ 952 (958)
.. ... .. ...+.....+|+++||.+|+++++||+|++++++|++|.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~ 439 (444)
T 2zan_A 360 THFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTED 439 (444)
T ss_dssp SEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSS
T ss_pred hhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 10 000 00 00011123579999999999999999999999999999999
Q ss_pred hhc
Q 002159 953 FEG 955 (958)
Q Consensus 953 ~~~ 955 (958)
|..
T Consensus 440 ~~~ 442 (444)
T 2zan_A 440 FGQ 442 (444)
T ss_dssp CTT
T ss_pred HcC
Confidence 864
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=334.94 Aligned_cols=278 Identities=34% Similarity=0.589 Sum_probs=233.7
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
+.+.+.|++++|++.+++.+.+.+.+|+.+++.|.....++.++||+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 34678999999999999999999999988888776545678899999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC-CCCcEEEEEecCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-SSQDLFIIGASNRPDLI 826 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~-~~~~v~VI~aTNrp~~l 826 (958)
|.|+.+..++.+|..++...|+||||||+|.+.+.++.. ......++++++|..|++... ...+++||+|||+++.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877542 234567899999999998753 24679999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
|++++| ||+..+++++ |+.++|..|++.+++..... .+.++..+++. ++||+|+||.++|++|+..|+++.....
T Consensus 235 ~~~l~~--Rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~-t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 235 DEAARR--RLVKRLYIPL-PEASARKQIVINLMSKEQCCLSEEEIEQIVQQ-SDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp CHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred CHHHHh--hCceEEEeCC-cCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999 9999999997 88999999999998775432 45678899999 5999999999999999999998642211
Q ss_pred CCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC
Q 002159 906 DSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 956 (958)
Q Consensus 906 ~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~~ 956 (958)
.. .........|+++||.+|+++++||++.++++.|++|.++|..+
T Consensus 311 ~~-----~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 311 IA-----TITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp -------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hc-----cccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 10 11112234799999999999999999999999999999999754
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-35 Score=323.66 Aligned_cols=278 Identities=34% Similarity=0.571 Sum_probs=228.8
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
.+.|.+.|++++|.+.+++.+.+.+.++..+++.|.....++.+++|+||||||||++|+++|++++.+|+.++++++.+
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34578899999999999999999998888888877643356789999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC--CCcEEEEEecCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS--SQDLFIIGASNRPD 824 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~--~~~v~VI~aTNrp~ 824 (958)
.|.|+.+..++.+|..++...|+||||||+|.+...+.... .....++.++++..+++.... ..+++||+|||+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 99999999999999999999999999999999998775432 234578899999999987532 25699999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
.+|++++| ||+..+++++ |+.+.|..|++.++++.... .+.++..+++. ++||+|+||.++|++|+..|+++...
T Consensus 171 ~l~~~l~~--R~~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~-~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSL-PDEQTRELLLNRLLQKQGSPLDTEALRRLAKI-TDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GBCHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hCCHHHHh--hCCeEEEeCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999997 88999999999998876532 35568889999 59999999999999999999987432
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~ 955 (958)
.... .........|+.+||..|++.++||++.++++.|++|.++|..
T Consensus 247 ~~~~-----~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 247 EQVK-----CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp ------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred hhcc-----cccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 1110 0111123479999999999999999999999999999999864
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.1e-35 Score=346.35 Aligned_cols=263 Identities=40% Similarity=0.694 Sum_probs=231.8
Q ss_pred Cccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccc
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYI 749 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~ 749 (958)
.+.|++++|++..++.+.+.+.+++.+++.|. .+..++.++|||||||||||++|+++|++++.+|+.++++++.+.|+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 35799999999999999999999999999988 57888999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChh
Q 002159 750 GESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPA 829 (958)
Q Consensus 750 Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpa 829 (958)
|+.+..++.+|..|....|+||||||+|.+.++++.. .+....+++++|+..|++... ..+++||+|||+|+.||++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~-~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCT-TSCEEEEEEESCGGGBCGG
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhcccc-CCceEEEEecCCccccCHH
Confidence 9999999999999999999999999999999887543 345678999999999998754 5689999999999999999
Q ss_pred hcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 002159 830 LLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNS 909 (958)
Q Consensus 830 LlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~ 909 (958)
++|+|||++.|++++ |+.++|.+||+.+++.+++..++++..++.. ++||+|+||.++|++|++.|+++.....+...
T Consensus 357 l~r~gRf~~~i~i~~-P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~-t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 357 LRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGSTTSSCEEEECCC-CCHHHHHHHHHHHTTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HhCCCcCceEEEeCC-CCHHHHHHHHHHHHhcCCCcchhhHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999997 8899999999999999999999999999999 59999999999999999999998765433221
Q ss_pred CccccccCCcccccHHHHHHHHHHhCCCC
Q 002159 910 DSSRIDQADSVVVEYDDFVKVLRELSPSL 938 (958)
Q Consensus 910 ~~~~~~~~~~~~i~~~df~~al~~~~ps~ 938 (958)
.....+......|+++||++|+++++||.
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred cccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 11111112335799999999999877653
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.3e-34 Score=335.05 Aligned_cols=247 Identities=38% Similarity=0.708 Sum_probs=214.9
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
.+.++|+|++|++.+++.+.+.+.+ +..+..|. .+.+.+.+++|+||||||||+||+++|++++.+|+.++++++..+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999887754 44555555 577888999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
|+|.++..++.+|..|+..+||||||||+|.+.++|+.. +.......+++++||.+||++.. ..+++||+|||+|+.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhh
Confidence 999999999999999999999999999999999887642 11122346789999999998754 4689999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
||+++||||||+.|++++ |+.+.|.+|++.++++.++..++++..+|.. |+||+|+||.++|++|+..|.++.
T Consensus 168 d~allR~gRFd~~i~i~~-Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~-t~G~sgadL~~lv~~Aal~A~~~~----- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDP-PDMLGRKKILEIHTRNKPLAEDVNLEIIAKR-TPGFVGADLENLVNEAALLAAREG----- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred chhhcccCcceeEeecCC-CCHHHHHHHHHHHHHhCCCcchhhHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999997 8999999999999999999899999999999 599999999999999999998652
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 907 SNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 907 ~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
...|+.+||.+|+.++.+
T Consensus 241 ------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 ------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------------CSSBCHHHHHHHHHHHC-
T ss_pred ------------CCeecHHHHHHHHHHHhc
Confidence 125899999999999865
No 21
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-34 Score=320.68 Aligned_cols=240 Identities=20% Similarity=0.257 Sum_probs=198.2
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|++++.+++.++++++.+++.|++
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence 4677788765444455667899999877 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+.++||||||||+|+++.++...+. +...++...+.+++ ..+++....
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~-----~~~~~~~~~l~~lL----------------~~lDg~~~~ 285 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG-----GGDSEVQRTMLELL----------------NQLDGFETS 285 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS-----GGGGHHHHHHHHHH----------------HHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC-----CCcHHHHHHHHHHH----------------HhhhccCCC
Confidence 999999999999999999999999999986533221 12223333343432 223344447
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+|+||||||+++.||++++| ||++.|.++.||.++|.+|++.++++... ..|++ ++.+|..|+||+++|+..
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCCHHHHHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCCHHHHHH
Confidence 789999999999999999998 99999999999999999999999987653 33444 688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
+|++|++.++++. ...++++||..|+.++..
T Consensus 361 l~~eA~~~Air~~----------------------------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 361 VCTEAGMYALRER----------------------------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHTT----------------------------CSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhC
Confidence 9999999988642 235789999999987643
No 22
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=315.16 Aligned_cols=240 Identities=19% Similarity=0.255 Sum_probs=197.5
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|++++.+++.++++++.+++.|++
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHH
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchH
Confidence 4677888765555555667889999877 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+..+||||||||+|+++..+...+... ..++...+.+++ ..+++....
T Consensus 261 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-----~~~~~~~l~~LL----------------~~lDg~~~~ 319 (437)
T 4b4t_I 261 PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-----EREIQRTMLELL----------------NQLDGFDDR 319 (437)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-----CCHHHHHHHHHH----------------HHHHHCCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-----cHHHHHHHHHHH----------------HHhhCcCCC
Confidence 99999999999999999999999999998664332211 122233333332 223334446
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+|+||||||+++.||++++| ||++.|.++.||.++|.+|++.++++... ..|++ ++.+|..|+||+++||..
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDLSGADIQA 394 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSCCHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCCHHHHHH
Confidence 789999999999999999998 99999999999999999999999987653 34444 688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
||++|++.++++. ...++++||..|++++.+
T Consensus 395 l~~eA~~~Air~~----------------------------~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 395 MCTEAGLLALRER----------------------------RMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHHTT----------------------------CSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHhC
Confidence 9999999988742 235788999999987653
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.9e-33 Score=300.37 Aligned_cols=249 Identities=38% Similarity=0.688 Sum_probs=214.2
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
+.+...|++++|++.+++.+.+.+.+ +.+++.+. .+...+.+++|+||||||||++|+++|++++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34678899999999999999887654 55555544 46677889999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCC-CCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~-~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
.+.|+.++.++.+|+.|+...|+++||||+|.+...++... .......+++++++.+|++... ..+++||+|||+|+.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCchh
Confidence 99999999999999999999999999999999998765321 1122345789999999998864 568999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
+|++++|||||++.+++++ |+.++|.+|++.+.++.++..++++..++.. ++||+++||.++|++|+..|.++.
T Consensus 163 l~~~l~r~~rf~~~i~i~~-P~~~~r~~il~~~~~~~~l~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~---- 236 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRVPLAPDIDAAIIARG-TPGFSGADLANLVNEAALFAARGN---- 236 (257)
T ss_dssp SCGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred CCHHHcCCCcCCeEEEeCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 9999999999999999997 8899999999999999999889999999999 599999999999999999998652
Q ss_pred CCCCCccccccCCcccccHHHHHHHHHHhCCC
Q 002159 906 DSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 937 (958)
Q Consensus 906 ~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 937 (958)
...|+.+||.+|++.+...
T Consensus 237 -------------~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 237 -------------KRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp -------------CSSBCHHHHHHHHHHHTTC
T ss_pred -------------CCcccHHHHHHHHHHHhcC
Confidence 1258999999999987643
No 24
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-33 Score=317.31 Aligned_cols=241 Identities=19% Similarity=0.283 Sum_probs=197.6
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|++++.+++.++++++.+++.|++
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchH
Confidence 3667777765555555678999999877 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+..+||||||||+|+++.++...+ .....++...+..++. .+++....
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-----~~~~~~~~~~~~~lL~----------------~ldg~~~~ 318 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-----KSGDREVQRTMLELLN----------------QLDGFSSD 318 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-----GGTTHHHHHHHHHHHH----------------HHTTSCSS
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-----CCCchHHHHHHHHHHH----------------HhhccCCC
Confidence 99999999999999999999999999998653221 1122233333333321 22333346
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+|+||||||+++.||++++| ||++.|.++.||.++|.+|++.++++... ..|++ ++.+|..|+||+++||..
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEFNGAQLKA 393 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCCHHHHHH
Confidence 789999999999999999988 99999999999999999999999977643 33443 688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhccc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~ 659 (958)
+|++|++.++++. ...++++||.+|+.+++..
T Consensus 394 l~~eA~~~a~r~~----------------------------~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 394 VTVEAGMIALRNG----------------------------QSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHHHHHT----------------------------CSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhCC
Confidence 9999999988652 2357889999999977543
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.1e-33 Score=306.11 Aligned_cols=268 Identities=43% Similarity=0.712 Sum_probs=224.9
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
...|.++|++++|++.+++.+.+.+..++.+++.+. .++.++.+++|+||||||||++|+++|++++.+++.+++.++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 346788999999999999999999998888888887 5888899999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
+.|.|+.+..++.+|..++...|+||||||+|.+.+++...... .....+.+.+++.++++... ..+++||+|||+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA-RGDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS-SSSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999877643222 22346778889999988754 46899999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.+|++++|+|||+..++++. |+.++|.+|++.+.++..+..++++..++.. +.||+|+||.++|++|...|+++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~i~~l~~~a~~~a~~~~--- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPA-PDEKGRLEILKIHTRKMNLAEDVNLEEIAKM-TEGCVGAELKAICTEAGMNAIREL--- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hcCHHHcCCCcCCeEEEECC-CCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999996 8999999999999999988889999999999 599999999999999999998763
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhh
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSP--SLSMAELKKYELLRDQFE 954 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p--s~s~~~l~~y~~~~~~~~ 954 (958)
...|+.+||.+|++.+.+ +.+-..-.+|..|...|.
T Consensus 243 --------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (285)
T 3h4m_A 243 --------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEH 280 (285)
T ss_dssp --------------CSSBCHHHHHHHHHHHHHHHCCC---------------
T ss_pred --------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhc
Confidence 125899999999998753 234455677777777664
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=319.16 Aligned_cols=279 Identities=32% Similarity=0.526 Sum_probs=224.6
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
...+.+.|++++|.+.+++.+.+.+.++..+++.|.....++.++|||||||||||++|+++|.+++.+|+.+++.++.+
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34577899999999999999999998888888777644456789999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC-CCcEEEEEecCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS-SQDLFIIGASNRPDL 825 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~-~~~v~VI~aTNrp~~ 825 (958)
.|.|+.+..++.+|..++...|+||||||+|.++..+... ......+++++|+..|++.... ..+++||+|||+++.
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 9999999999999999999999999999999998876532 2345689999999999987542 457999999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
||++++| ||+..|++++ |+.++|..|++.++++.... .+.++..++.. ++||+|+||..+|+.|+..|+++....
T Consensus 265 l~~~l~~--R~~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~-~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 265 LDEAVLR--RFIKRVYVSL-PNEETRLLLLKNLLCKQGSPLTQKELAQLARM-TDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp CCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred cCHHHHc--CcceEEEcCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999 9999999997 88999999999998765332 34568899999 599999999999999999999874322
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 956 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~~~~~~~ 956 (958)
... .........|+.+||..|++.++|+++.++++.|++|.++|...
T Consensus 341 ~~~-----~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 341 QVK-----NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp --------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred hhh-----ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 111 11112234699999999999999999999999999999999753
No 27
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=311.66 Aligned_cols=239 Identities=18% Similarity=0.228 Sum_probs=195.0
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|++++.+|+.++++++++++.|++
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHH
Confidence 4677777754434444556889999876 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+..+|||+||||+|+++..|...+. +....+...+..++ ..+++....
T Consensus 288 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~-----~~~~~~~~~l~~lL----------------~~lDg~~~~ 346 (467)
T 4b4t_H 288 ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA-----GGDNEVQRTMLELI----------------TQLDGFDPR 346 (467)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC-----GGGGHHHHHHHHHH----------------HHHHSSCCT
T ss_pred HHHHHHHHHHHHhcCCceEeecccccccccccCcCC-----CccHHHHHHHHHHH----------------HHhhccCCC
Confidence 999999999999999999999999999986643321 11222333333332 122333346
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+|+||||||+++.||++++| ||++.|.++.||.++|.+||+.++++... ..|++ ++.+|+.|+||+++||..
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNSTGAELRS 421 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCCHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCCHHHHHH
Confidence 789999999999999999998 99999999999999999999999987643 33443 688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
||++|++.++++. ...++++||..|++++.
T Consensus 422 l~~eAa~~Air~~----------------------------~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 422 VCTEAGMFAIRAR----------------------------RKVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHHHHHHHHHHHT----------------------------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHh
Confidence 9999999988752 23568899999998764
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-32 Score=320.59 Aligned_cols=247 Identities=37% Similarity=0.687 Sum_probs=215.3
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
+.++|++++|++.++..+.+.+.+ +..+..+. .+...+.+++|+||||||||+||++||++++.+|+.++++++..+|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999877643 44455554 4677788999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
+|..+..++.+|+.++...|||+||||+|.+...++.. +.......+.++++|.+|+|... ...++++++||+|+.||
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcC
Confidence 99999999999999988889999999999998877532 11223446789999999999864 46789999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
|+++||||||+.|++++ |+.+.|.+||+.+.++.++..++++..+|.. ++||+|+||.++|++|+..|.++.
T Consensus 184 ~aLlr~gRfdr~i~i~~-Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~-t~G~~gadL~~lv~~Aa~~A~~~~------ 255 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG------ 255 (499)
T ss_dssp TTTSSTTSSCCEEECCC-CCHHHHHHHHHHTTSSSCCCCSSTTHHHHTT-SCSCCHHHHHHHHHHHHHHHTTTC------
T ss_pred cccccccccceEEecCC-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999997 8999999999999999999999999999999 599999999999999999887541
Q ss_pred CCCccccccCCcccccHHHHHHHHHHhCCC
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLRELSPS 937 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~~ps 937 (958)
...|+++||.+|+.++.++
T Consensus 256 -----------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 -----------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----------CSSCCSHHHHHHHHHHTTC
T ss_pred -----------CCccCHHHHHHHHHHHhcc
Confidence 1258999999999998664
No 29
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=310.91 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=196.6
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|+++|.+++.++++++++++.|++
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHH
Confidence 4667777765555555667889999877 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+.++||||||||+|+++.++...+... ..++...+..++ ..+++....
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~-----~~~~~~~l~~lL----------------~~lDg~~~~ 318 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA-----DREIQRTLMELL----------------TQMDGFDNL 318 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS-----TTHHHHHHHHHH----------------HHHHSSSCT
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCc-----chHHHHHHHHHH----------------HHhhcccCC
Confidence 99999999999999999999999999998664433221 122333333332 122333346
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+|+||||||+++.|||+++| ||++.|.++.||..+|.+|++.++++... ..+++ ++.+|..|+||+++||..
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCCHHHHHH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCCHHHHHH
Confidence 789999999999999999988 59999999999999999999999987653 33443 688999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
+|++|++.++++. ...++++||..|++++..
T Consensus 394 l~~eA~~~air~~----------------------------~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 394 CATEAGFFAIRDD----------------------------RDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------------------------CCCCCHHHHHHHHHHHHh
Confidence 9999999987642 235788999999987643
No 30
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.2e-31 Score=303.81 Aligned_cols=238 Identities=17% Similarity=0.248 Sum_probs=194.5
Q ss_pred CCCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 365 SNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 365 ~~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
+++.++++.........++.|+.+|..| ++++++|||||||||||||++|+++|++++.+++.++++++.+++.|++
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchh
Confidence 4667788764444455566889999876 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..|+..+|||+|+||+|+++..+....... ..+...++.+++ ..+++....
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-----~~~~~r~l~~lL----------------~~ldg~~~~ 309 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-----DREVQRILIELL----------------TQMDGFDQS 309 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-----CCHHHHHHHHHH----------------HHHHHSCSS
T ss_pred HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC-----ChHHHHHHHHHH----------------HHhhCCCCC
Confidence 99999999999999999999999999998664332111 112223333332 233444446
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcC-CCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMG-PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLH 598 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig-~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~ 598 (958)
.+|+||||||+++.||++++| ||++.|.++ .|+..+|..|++.++++... ..+++ ++.+|..|+||+++|+.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~d----l~~lA~~t~G~sgadi~ 384 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEAD----LDSLIIRNDSLSGAVIA 384 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCC----HHHHHHHTTTCCHHHHH
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHHCCCCCHHHHH
Confidence 789999999999999999998 999999995 89999999999999987653 33443 68899999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 599 ALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 599 ~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
.+|++|++.++++. ...++++||.+|+...
T Consensus 385 ~l~~eA~~~a~r~~----------------------------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 385 AIMQEAGLRAVRKN----------------------------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----------------------------CCCCCHHHHHHHHHHh
Confidence 99999999998752 2357889999999754
No 31
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=1.1e-31 Score=289.19 Aligned_cols=244 Identities=37% Similarity=0.703 Sum_probs=206.3
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|..+|++++|++.++..+.+.... +..+..+. .++..+.|++|+||||||||||++++++.++..++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 456889999999999999988776543 33444444 4667778899999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
..+.|+..+.++.+|+.+....|+++|+||+|.+...++.. +.......+.+++++.+|+|... ...++++++||+|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCch
Confidence 99999988999999999988889999999999998766431 11123446788999999998754 46789999999999
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.+|++++|+|||++.+++++ |+.++|.+|++.+.+..++..++++..+|.. ++||+|+||.++|++|+..|.++.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~-~~G~~~~dl~~~~~~a~~~a~~~~--- 240 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG--- 240 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCS-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hCCHHHcCCCcCCeEEeeCC-cCHHHHHHHHHHHHcCCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999997 8999999999999999988899999999999 599999999999999999987642
Q ss_pred cCCCCCccccccCCcccccHHHHHHHH
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVL 931 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al 931 (958)
...|+.+||++|+
T Consensus 241 --------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 --------------RRKITMKDLEEAA 253 (254)
T ss_dssp --------------CSSBCHHHHHHHT
T ss_pred --------------CCCcCHHHHHHHh
Confidence 1258999999986
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.3e-32 Score=294.92 Aligned_cols=247 Identities=31% Similarity=0.608 Sum_probs=194.7
Q ss_pred CCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
|.++|++++|++.+|+.+.+.+.+ +.+++.+. .+...+.+++|+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 567899999999999999887654 55555554 5778889999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC--cchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC
Q 002159 749 IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS--GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 826 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~--~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l 826 (958)
.|.++..++.+|+.+....|+||||||+|.+..++...... .......+++++.++++... ..+++||+|||+++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 99999999999999999999999999999998776432110 12234678899999998754 4689999999999999
Q ss_pred ChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcC--HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 827 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS--LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 827 dpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~--l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
|++++|+|||+..+++++ |+.++|.+|++.+++...+..+.+ +..++.. ++||+|+||.++|++|+..|+++.
T Consensus 159 d~~l~~~~R~~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~l~~l~~~a~~~a~~~~--- 233 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDL-PTLQERREIFEQHLKSLKLTQSSTFYSQRLAEL-TPGFSGADIANICNEAALHAAREG--- 233 (262)
T ss_dssp GSGGGSTTSCCEEEECCS-CCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHT-CTTCCHHHHHHHHHHHHTC--------
T ss_pred CHHHhcCCcCCeEEEeCC-cCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999999999999997 889999999999998877665544 4778888 599999999999999999887652
Q ss_pred cCCCCCccccccCCcccccHHHHHHHHHHhCCC
Q 002159 905 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 937 (958)
Q Consensus 905 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 937 (958)
...|+.+||.+|++++.++
T Consensus 234 --------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 --------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp -----------------CCBCCHHHHHHHHHHH
T ss_pred --------------CCCCCHHHHHHHHHHhccC
Confidence 1257888999999988665
No 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=5.5e-33 Score=301.51 Aligned_cols=256 Identities=35% Similarity=0.626 Sum_probs=214.2
Q ss_pred CCCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh
Q 002159 667 PKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 745 (958)
Q Consensus 667 ~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~ 745 (958)
.+.|...|++++|.+.+++.+.+.+.+ +.+++.|. .+...+.+++|+||||||||++|+++|++++.+|+.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356778999999999999999887654 56666665 4778888999999999999999999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCC--CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 746 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD--SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~--~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
+.+.|.++..++.+|+.+....|+||||||+|.+...+...+. ......+++++|+..+++......+++||+|||++
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999987632211 01112356788999999876555679999999999
Q ss_pred CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 824 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 824 ~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
+.+|++++|+|||+..+++++ |+.++|..|++.+++..++..++++..+++. ++||+|+||.++|++|+..|.++
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~-~~g~~g~dl~~l~~~a~~~a~~~--- 236 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDK-PDFNGRVEILKVHIKGVKLANDVNLQEVAKL-TAGLAGADLANIINEAALLAGRN--- 236 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCC-CCTTTHHHHHHHHTSSSCCCSSCCTTTTTSS-SCSSCHHHHHHHHHHHHHTTSSS---
T ss_pred hhcCHhHcCCCCCCeEEEecC-cCHHHHHHHHHHHHhcCCCCCccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHh---
Confidence 999999999999999999997 7889999999999998888888899999998 59999999999999998877532
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHH
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAE 942 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~ 942 (958)
....|+.+||.+|++.+.|+...+.
T Consensus 237 --------------~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 237 --------------NQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp --------------CCCSCCHHHHHTSCTTCCCCCC---
T ss_pred --------------ccCCcCHHHHHHHHHHHhhcchhhh
Confidence 1125899999999999999865543
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=2.2e-30 Score=321.40 Aligned_cols=420 Identities=14% Similarity=0.218 Sum_probs=281.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhcCCCeEEeec
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSYSPTILLLR 463 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~~~P~IL~iD 463 (958)
.+.+++|+||||||||++++++|+.+ +..++.+++..+. ..+.++.+..++.+|..+....++++|||
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34579999999999999999999987 6678888877766 35667888999999999988789999999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CCCCh
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPP 538 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~Ld~ 538 (958)
|++.+...... .....+....+..+.+ .+.+.+|++|+.+ ..+++
T Consensus 286 Ei~~l~~~~~~-------~~~~~~~~~~L~~~l~-----------------------~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 286 EIHTIIGAGAA-------SGGQVDAANLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp TTTTTTTSCCS-------SSCHHHHHHHHSSCSS-----------------------SCCCEEEEEECHHHHHCCCCCTT
T ss_pred chHHHhhcCCC-------CcchHHHHHHHHHHHh-----------------------CCCeEEEEEeCchHHhhhhhcCH
Confidence 99998763211 0112233333322211 4678889999854 45788
Q ss_pred hhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC-----CChhhHHHHHHHHHHHHHHhhc
Q 002159 539 TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-----FMPRDLHALVADAGANLIRKSN 613 (958)
Q Consensus 539 alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G-----fv~~DL~~Lv~eA~~~a~~r~~ 613 (958)
++++||. .+.++.|+.++|.+|++.+.......+.-.-.+..+..++..+.| +.+..+..++.+|+.......
T Consensus 336 aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~- 413 (758)
T 1r6b_X 336 ALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMP- 413 (758)
T ss_dssp SSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSS-
T ss_pred HHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhccc-
Confidence 9999996 799999999999999998875421111111123445555555555 555667777777654332110
Q ss_pred cccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCcccccc--------------cc
Q 002159 614 SEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDV--------------GG 679 (958)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di--------------~G 679 (958)
. . .....++.+++.+++...... ..+...|++. .|
T Consensus 414 -~--~--------------------~~~~~v~~~di~~~~~~~~~i--------p~~~~~~~~~~~l~~l~~~l~~~v~g 462 (758)
T 1r6b_X 414 -V--S--------------------KRKKTVNVADIESVVARIARI--------PEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_dssp -S--C--------------------CCCCSCCHHHHHHHHHHHSCC--------CCCCSSSSHHHHHHHHHHHHTTTSCS
T ss_pred -c--c--------------------ccCCccCHHHHHHHHHHhcCC--------CccccchhHHHHHHHHHHHHHhhccC
Confidence 0 0 012345677777776643211 1123344443 34
Q ss_pred ccccccccceeeeccccchhhhhcCCC----CCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc--------
Q 002159 680 LEDVKKSILDTVQLPLLHKDLFSSGLR----KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-------- 747 (958)
Q Consensus 680 l~~vk~~l~e~i~~~l~~~~~~~~~i~----~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~-------- 747 (958)
.+.+++.+...+. ....|+. +...++|+||||||||++|+++|..++.+|+.++++++...
T Consensus 463 ~~~~~~~l~~~i~-------~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 463 QDKAIEALTEAIK-------MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp CHHHHHHHHHHHH-------HHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred HHHHHHHHHHHHH-------HHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 3333333322221 1112332 33469999999999999999999999999999999887653
Q ss_pred ----cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC--------CCCcEE
Q 002159 748 ----YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--------SSQDLF 815 (958)
Q Consensus 748 ----~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~--------~~~~v~ 815 (958)
|+|..+. +.+....+...++||||||+|.+. ..+++.|+..||.-.- ...+++
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 4454332 234455566677999999999874 3577888888873210 124688
Q ss_pred EEEecCCCC-------------------------CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhc--------
Q 002159 816 IIGASNRPD-------------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------- 862 (958)
Q Consensus 816 VI~aTNrp~-------------------------~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~-------- 862 (958)
||+|||.+. .++|+|+. |||..|.|+. ++.+.+..|++.+++..
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~-l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDH-LSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCC-CCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999864 57888988 9999999994 88999999998887632
Q ss_pred ---cCCCCcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002159 863 ---KLLEDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLS 904 (958)
Q Consensus 863 ---~~~~d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~ 904 (958)
.++ +.-+..|++.+ +.+|.++++.++++.+...++.+.+..
T Consensus 678 ~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~ 722 (758)
T 1r6b_X 678 VSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_dssp EEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHH
T ss_pred cEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 121 22356666642 456778999999999998887776654
No 35
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=4.5e-30 Score=280.70 Aligned_cols=243 Identities=37% Similarity=0.706 Sum_probs=204.8
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~ 746 (958)
..|.++|++++|.+.++..+.+.... +..+..+. .++..+.+++|+||||||||||++++++.++..++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34789999999999999888776543 33344444 46667778999999999999999999999999999999999988
Q ss_pred ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC-CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 747 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 747 ~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~-~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
.+.++..+.++.+|+.+....|+++|+||+|.+...+... +.......+.+++++.+|+|... ...++++++||+|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCchh
Confidence 8899888899999999998889999999999998765421 11122346788999999998753 457899999999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
||++++|+|||++.+++++ |+.++|.+|++.+.+..++..++++..+|.. ++||+|+||.++|++|+..|.++.
T Consensus 191 ld~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~---- 264 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG---- 264 (278)
T ss_dssp SCHHHHSTTSSCCEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred CCHhHcCCCcCCeEEEeCC-cCHHHHHHHHHHHHccCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 9999999999999999997 8999999999999999888889999999999 599999999999999999887542
Q ss_pred CCCCCccccccCCcccccHHHHHHHH
Q 002159 906 DSNSDSSRIDQADSVVVEYDDFVKVL 931 (958)
Q Consensus 906 ~~~~~~~~~~~~~~~~i~~~df~~al 931 (958)
...|+.+||++|+
T Consensus 265 -------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 -------------RRKITMKDLEEAA 277 (278)
T ss_dssp -------------CCSBCHHHHHHHT
T ss_pred -------------CCCcCHHHHHHHh
Confidence 1258999999986
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=3e-29 Score=311.02 Aligned_cols=431 Identities=15% Similarity=0.239 Sum_probs=262.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
..++||+||||||||++++++|..+ +..++.+++ ...+.|+.+..++.+|..+....|+|+|||
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--- 274 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--- 274 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC---
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---
Confidence 3469999999999999999999997 778888887 445667888899999999998899999999
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhh
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIR 541 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alr 541 (958)
.. . .....+...+ .++.+.+|++||... .++++++
T Consensus 275 --~~--------~-------~~~~~L~~~l-----------------------~~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 275 --AA--------I-------DASNILKPSL-----------------------ARGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --C-----------------------CCCT-----------------------TSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --Cc--------h-------hHHHHHHHHH-----------------------hcCCEEEEeCCChHHHHHHhhccHHHH
Confidence 11 0 0111111111 156799999999888 7999999
Q ss_pred ccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHHHHhhcccc
Q 002159 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT-----SGFMPRDLHALVADAGANLIRKSNSEV 616 (958)
Q Consensus 542 rrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t-----~Gfv~~DL~~Lv~eA~~~a~~r~~~~~ 616 (958)
+|| ..+.++.|+.+++.+|++.+.......+.-.-.+..+..++..+ .++.+.+...++.+|+..+..+....-
T Consensus 315 rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p 393 (758)
T 3pxi_A 315 RRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTP 393 (758)
T ss_dssp HSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCC
Confidence 999 67999999999999999988766433221111233444444433 346777777788777655433211100
Q ss_pred ccCCCCcchhhHHhhh----------cCcchh---------------------------hhhccccHHHHHHHHHhhccc
Q 002159 617 DKNEPGESDLTAKVAH----------NDNSSI---------------------------AATQVMGKEDLVKAMERSKKR 659 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~----------~~~~~~---------------------------~~~~~~~~ed~~~al~~~~~~ 659 (958)
.....+...+.. ...... .....++.+++...+......
T Consensus 394 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~i 469 (758)
T 3pxi_A 394 ----PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGV 469 (758)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC--
T ss_pred ----cchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCC
Confidence 000010000000 000000 001123333333333321100
Q ss_pred ccccCC------CCCCCCccccccccccccccccceeeeccccchhhhhcCCC----CCCcEEEecCCCChhHHHHHHHH
Q 002159 660 NASALG------APKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLR----KRSGVLLYGPPGTGKTLLAKAVA 729 (958)
Q Consensus 660 ~~s~l~------~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~----~~~~iLL~GppGtGKTtLakaiA 729 (958)
....+. .......-.+++.|.+.+++.+.+.+.. ...+.. +..+++|+||||||||++|+++|
T Consensus 470 p~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~-------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 470 PVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRR-------ARAGLKDPKRPIGSFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp -----CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHH-------HTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHH
T ss_pred ChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHH-------HHcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 000000 0000001113355555555554443321 111221 22269999999999999999999
Q ss_pred HHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC
Q 002159 730 TEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 806 (958)
Q Consensus 730 ~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg 806 (958)
..+ +.+|+.++++++...+... ...++...+...++||||||+|.+. ..+.+.|+..|+.
T Consensus 543 ~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 543 ESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLED 605 (758)
T ss_dssp HHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHH
T ss_pred HHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhcc
Confidence 997 6789999999988776654 2234445566677999999999874 3567778877774
Q ss_pred CC--------CCCCcEEEEEecCCCCC------------CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc---
Q 002159 807 LN--------DSSQDLFIIGASNRPDL------------IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK--- 863 (958)
Q Consensus 807 ~~--------~~~~~v~VI~aTNrp~~------------ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~--- 863 (958)
-. ....+++||+|||.+.. +.|+|+. |||..|.|+. ++.+.+..|++.+++.+.
T Consensus 606 g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~-l~~~~~~~i~~~~l~~~~~~~ 682 (758)
T 3pxi_A 606 GRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHS-LEKKHLTEIVSLMSDQLTKRL 682 (758)
T ss_dssp SBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 21 12346899999998664 7788887 9999999995 889999999988775431
Q ss_pred ----CC---CCcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 864 ----LL---EDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 864 ----~~---~d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
.. .+.-++.|++++ ...+..++|.++++++...++.+.+...
T Consensus 683 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~ 732 (758)
T 3pxi_A 683 KEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRG 732 (758)
T ss_dssp HTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTT
T ss_pred HhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 11 122356666642 3456678999999999998888877543
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.9e-29 Score=313.15 Aligned_cols=265 Identities=40% Similarity=0.691 Sum_probs=231.9
Q ss_pred CCCccccccccccccccccceeeeccccchhhhh-cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 747 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~ 747 (958)
.+.++|++++|++.+++.+.+.+.+|+.+++.|. .++.++.+++|+|||||||||||++||++++.+|+.++++++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4578999999999999999999999999999988 588999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 748 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 748 ~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
|.|+.+..++.+|+.+....|+++||||+|.++++++.. .+....+++++|+..|++... ..++++|+|||+|+.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcC
Confidence 999999999999999999999999999999999887543 345668899999999999864 46899999999999999
Q ss_pred hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC
Q 002159 828 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS 907 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~ 907 (958)
+++.|+|||++.+++++ |+.+.|.+|++.+.+++.+..++++..++.. ++||+|+|+.++|++|++.++++.......
T Consensus 355 ~al~r~gRf~~~i~i~~-p~~~~r~~il~~~~~~~~l~~~~~l~~la~~-t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp TTTTSTTSSCEEECCCC-CCHHHHHHHHHHTTTTSCCCTTCCTHHHHHS-CSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHhcccccccccccCC-CCHHHHHHHHHHHHhcCCCcccchhHHHHHh-hcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999997 8999999999999999999999999999999 599999999999999999999876432221
Q ss_pred CCCccccccCCcccccHHHHHHHHHHhCCCC
Q 002159 908 NSDSSRIDQADSVVVEYDDFVKVLRELSPSL 938 (958)
Q Consensus 908 ~~~~~~~~~~~~~~i~~~df~~al~~~~ps~ 938 (958)
..............++.+||..++....|+.
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchh
Confidence 0000001112334688899999999988764
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.95 E-value=1.4e-28 Score=308.54 Aligned_cols=451 Identities=19% Similarity=0.267 Sum_probs=256.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhhcC-CCeEEeec
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSY-SPTILLLR 463 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~~~-~P~IL~iD 463 (958)
+.+++|+||||||||++++++|+.+ +..++.+++..+. ..+.++.+..+..+|..+... .|+|+|||
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3468999999999999999999998 8899999998887 456678888999999988764 68999999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC----CCChh
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE----GLPPT 539 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~----~Ld~a 539 (958)
|+|.+.+.....+ ...+...+..++ .++.+.+|++||.+. .++++
T Consensus 271 Ei~~l~~~~~~~g--------~~~~~~~L~~~l-----------------------~~~~i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 271 ELHTVVGAGKAEG--------AVDAGNMLKPAL-----------------------ARGELRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp CC---------------------------HHHH-----------------------HTTCCCEEEEECHHHHHHHTTCTT
T ss_pred cHHHHhccCCccc--------hHHHHHHHHHHH-----------------------hCCCeEEEEecCchHHhhhccCHH
Confidence 9999875321111 112222233322 146778999998663 57899
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCC-CcHHHHHHHhhhcC-----CCChhhHHHHHHHHHHHHHHhhc
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-GSEEFVKDIIGQTS-----GFMPRDLHALVADAGANLIRKSN 613 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~-~~~~~L~~la~~t~-----Gfv~~DL~~Lv~eA~~~a~~r~~ 613 (958)
+++||.. +.++.|+..++.+|++.++......+ ++ -.+..+..++..++ +|.+.....++.+|+........
T Consensus 320 L~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~-~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~ 397 (854)
T 1qvr_A 320 LERRFQP-VYVDEPTVEETISILRGLKEKYEVHH-GVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALE 397 (854)
T ss_dssp TCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHT-TCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhc-CCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhcc
Confidence 9999975 99999999999999998775322111 11 11334455555443 36676777777666544332110
Q ss_pred c--------------------ccccCC-----CCcchhhH---Hhhhc----Ccchhhh---------------------
Q 002159 614 S--------------------EVDKNE-----PGESDLTA---KVAHN----DNSSIAA--------------------- 640 (958)
Q Consensus 614 ~--------------------~~~~~~-----~~~~~~~~---~~~~~----~~~~~~~--------------------- 640 (958)
. ....+. .....+.. ++.+. ...+...
T Consensus 398 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (854)
T 1qvr_A 398 SAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 477 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0 000000 00000000 00000 0000000
Q ss_pred ----------------------------------------hccccHHHHHHHHHhhcccccccCCCC------CCCCccc
Q 002159 641 ----------------------------------------TQVMGKEDLVKAMERSKKRNASALGAP------KVPNVKW 674 (958)
Q Consensus 641 ----------------------------------------~~~~~~ed~~~al~~~~~~~~s~l~~~------~~p~v~~ 674 (958)
...+..+++...+..........+... ..+..-|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~ 557 (854)
T 1qvr_A 478 ELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELH 557 (854)
T ss_dssp HHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHH
T ss_pred HHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHh
Confidence 011122222222211100000000000 0001112
Q ss_pred cccccccccccccceeeeccccchhhhhcCC----CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGL----RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM 747 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i----~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~ 747 (958)
+++.|.+..++.+...+.. ...++ ++...++|+||||||||++|++++..+ +.+|+.++++++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~-------~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRR-------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHH-------HGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 3344555444444333211 11121 222479999999999999999999998 788999998876543
Q ss_pred ------------cccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC------
Q 002159 748 ------------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND------ 809 (958)
Q Consensus 748 ------------~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~------ 809 (958)
|+|..+ .+.+....+...++||||||+|.+. ..+.+.|+..|+.-.-
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCC
Confidence 333322 1234444555667899999998774 3578888888874310
Q ss_pred --CCCcEEEEEecCCC--------------------------CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh
Q 002159 810 --SSQDLFIIGASNRP--------------------------DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 861 (958)
Q Consensus 810 --~~~~v~VI~aTNrp--------------------------~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~ 861 (958)
.-.+++||+|||.+ ..+.|+|+. |||..+.+. |++.+....|++.+++.
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~-pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR-PLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC-CCCHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC-CCCHHHHHHHHHHHHHH
Confidence 12478899999973 245677776 999998887 48899999998887763
Q ss_pred cc---------C-CCCcCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002159 862 FK---------L-LEDVSLYSIAKKCPP--NFTGADMYALCADAWFHAAKRKVLSSD 906 (958)
Q Consensus 862 ~~---------~-~~d~~l~~la~~~t~--g~sGaDi~~l~~~A~~~A~~r~~~~~~ 906 (958)
.. + -.+.-+..|+..+ . .+..++|.++|+++...++.+.+...+
T Consensus 773 ~~~~~~~~~~~~~~~~~a~~~L~~~~-~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~ 828 (854)
T 1qvr_A 773 LRARLAEKRISLELTEAAKDFLAERG-YDPVFGARPLRRVIQRELETPLAQKILAGE 828 (854)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHH-CBTTTBTSTHHHHHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHhCCceEEECHHHHHHHHHcC-CCCCCChHHHHHHHHHHHHHHHHHHHHhCc
Confidence 21 1 1122356677663 3 567899999999999999888776543
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=3.4e-27 Score=260.05 Aligned_cols=223 Identities=19% Similarity=0.249 Sum_probs=157.5
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHH----HhcCCcEEEEcccccc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA----RSARPCVIFFDELDSL 779 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A----~~~~P~ILfiDEiD~l 779 (958)
+.+++.++|||||||||||+||+++|++++.+|+.++++++.+.|+|+++..++++|+.| +...||||||||+|++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHH
Q 002159 780 APARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 849 (958)
Q Consensus 780 ~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~ 849 (958)
++.++..........++.+.|+..||+.. ....+++||+|||+++.||++++||||||+.|++ |+.+
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~---P~~~ 188 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---PTRE 188 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC---CCHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC---cCHH
Confidence 98665333222234578899999998543 1245799999999999999999999999999974 5899
Q ss_pred HHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHH---HHHHHHHHHHHHHhcccCCCCC-------ccccccCCc
Q 002159 850 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYA---LCADAWFHAAKRKVLSSDSNSD-------SSRIDQADS 919 (958)
Q Consensus 850 ~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~---l~~~A~~~A~~r~~~~~~~~~~-------~~~~~~~~~ 919 (958)
+|.+|++.+... .++++..+++. ++||+|+||.. +.......++++.+........ ........+
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~-~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKI-VDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQ 263 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHH-HHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHHTSCSSCSCCCCC
T ss_pred HHHHHHHHhccC----CCCCHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCC
Confidence 999999988764 35778999998 59999998863 2222333344443332211000 001111233
Q ss_pred ccccHHHHHHHHHHh
Q 002159 920 VVVEYDDFVKVLREL 934 (958)
Q Consensus 920 ~~i~~~df~~al~~~ 934 (958)
..++.+++.++-..+
T Consensus 264 ~~~~~~~l~~~g~~~ 278 (293)
T 3t15_A 264 PKMTIEKLLEYGNML 278 (293)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 457777777776665
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=246.83 Aligned_cols=219 Identities=20% Similarity=0.303 Sum_probs=173.9
Q ss_pred CCCcCCchHHHHHHH-HHHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILA-SILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~-~ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~l-g~~~~~I~~~~l~s~~~g~~ 441 (958)
++.+++.. ..+.|. .++.|..+|..+. ..++.+|||+||||||||++++++|+++ +.+++.++++++.+.+.++.
T Consensus 12 ~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~ 90 (322)
T 1xwi_A 12 SDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 90 (322)
T ss_dssp GGSCSCHH-HHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSC
T ss_pred HHhcCHHH-HHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHH
Confidence 55666664 444444 4557777877763 3566899999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHH-HHHHHHHhcCCCCCccccccCCCCchhhhhhhh
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSE-VASVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~-v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~ 520 (958)
+..++.+|..+....|+||||||+|.+...+... ......+ +..++..+... ...
T Consensus 91 ~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~ld~~-------------------~~~ 146 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----ESEAARRIKTEFLVQMQGV-------------------GVD 146 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-----CTTHHHHHHHHHHHHHHCS-------------------SSC
T ss_pred HHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-----cchHHHHHHHHHHHHHhcc-------------------ccc
Confidence 9999999999999999999999999998744221 1111112 22233222110 012
Q ss_pred cCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 521 ~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
..+++||+|||.++.++++++|||+..+.++.|+.++|.+|++.++..... .. .+..++.++..+.||+++|+..|
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l-~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SL-TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CC-CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 568999999999999999999999999999999999999999999876543 11 35678999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 002159 601 VADAGANLIRKSN 613 (958)
Q Consensus 601 v~eA~~~a~~r~~ 613 (958)
|++|.+.++++..
T Consensus 223 ~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 223 VRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988743
No 41
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=235.98 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=180.0
Q ss_pred CCCcCCchHHHHHHHH-HHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILAS-ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~-ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
++.++++ ++.+.|.+ ++.|+.++..+ +...+.|++|+||||||||||++++|++++..++.+++.++...+.++.
T Consensus 10 ~di~g~~-~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~ 88 (274)
T 2x8a_A 10 ADIGALE-DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88 (274)
T ss_dssp --CCHHH-HHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHH
T ss_pred HHhCCHH-HHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHH
Confidence 4455554 45566654 66787777654 4577788999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|+.+....|+++++||+|.++..+.... .......+...+.++ ++....
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~L--------------------sgg~~~ 144 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEM--------------------DGLEAR 144 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHH--------------------HTCCST
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhh--------------------hccccc
Confidence 99999999999888999999999999876432110 001111222223222 222225
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcc--cCCCCCcHHHHHHHhhhc--CCCChh
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSE--LTSDTGSEEFVKDIIGQT--SGFMPR 595 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~--l~~D~~~~~~L~~la~~t--~Gfv~~ 595 (958)
..++++|+||+++.+|++++| ||++.|.++.|+..+|.+|++.++++... +..|+ .++.++..+ +||+++
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~sga 220 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADV----NLEAIAGDLRCDCYTGA 220 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTC----CHHHHHTCSGGGSCCHH
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCcccc----CHHHHHHhhccCCcCHH
Confidence 678999999999999999998 99999999999999999999999865322 22233 367888874 599999
Q ss_pred hHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 596 DLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 596 DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
|+..||++|++.++++....... ........++++||.+|+...++
T Consensus 221 dl~~l~~~a~~~a~~~~~~~~~~-----------------~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 221 DLSALVREASICALRQEMARQKS-----------------GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-----------------cccccCCeecHHHHHHHHHHhcC
Confidence 99999999999998764211100 00012347899999999997753
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=3.6e-24 Score=238.97 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=171.6
Q ss_pred CCCcCCchHHHHHHHH-HHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~-ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
++.++... ..+.|.+ +..|..+|..+. ..++.++||+||||||||++|+++|++++.+++.++|.++.+.+.++.+
T Consensus 18 ~di~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 96 (322)
T 3eie_A 18 EDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 96 (322)
T ss_dssp GGSCSCHH-HHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHH
T ss_pred HHhcChHH-HHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHH
Confidence 44555554 4444444 456777776552 3556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHH-HHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v-~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
..++.+|..+....|+||||||+|.+...+... ......++ ..++..+.. .....
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~l~~-------------------~~~~~ 152 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----ESEASRRIKTELLVQMNG-------------------VGNDS 152 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------CCTHHHHHHHHHHHGG-------------------GGTSC
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-----cchHHHHHHHHHHHHhcc-------------------ccccC
Confidence 999999999999999999999999998744211 11122222 333333211 00125
Q ss_pred CcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
.+++||+|||.++.+++++++||...+.++.|+.++|.+|++.++.+.... ..+..++.++..+.||+++|+..||
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV----LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC----CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 679999999999999999999999999999999999999999999765431 1355789999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 002159 602 ADAGANLIRKSN 613 (958)
Q Consensus 602 ~eA~~~a~~r~~ 613 (958)
++|.+.++++..
T Consensus 229 ~~a~~~a~r~~~ 240 (322)
T 3eie_A 229 KDALMQPIRKIQ 240 (322)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.91 E-value=5.4e-24 Score=240.81 Aligned_cols=217 Identities=22% Similarity=0.301 Sum_probs=165.4
Q ss_pred CCCcCCchHHHHHHHH-HHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~-ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
++.+++.. ..+.|.+ +..|..+|..+. ..++.+|||+||||||||++|+++|++++.+++.+++.++.+.+.++.+
T Consensus 51 ~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~ 129 (355)
T 2qp9_X 51 EDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 129 (355)
T ss_dssp GGSCCGGG-HHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CH
T ss_pred HHhCCHHH-HHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHH
Confidence 44555554 4444444 456666776552 3566799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHH-HHHHHHhcCCCCCccccccCCCCchhhhhh-hh
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEK-IC 520 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v-~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~-~~ 520 (958)
..++.+|..+....|+||||||+|.+...+... +......+ ..++..+. +. ..
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-----~~~~~~~~~~~ll~~l~--------------------~~~~~ 184 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----ESEASRRIKTELLVQMN--------------------GVGND 184 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC-----------CTHHHHHHHHHHHHHH--------------------HCC--
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-----cchHHHHHHHHHHHHhh--------------------ccccc
Confidence 999999999998899999999999998743211 11111122 22222221 11 11
Q ss_pred cCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 521 ~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
..+++||+|||.++.+++++++||...+.++.|+.++|.+|++.++...... . .+..++.++..+.||+++|+..|
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~-~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV---L-TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC---C-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---C-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999765431 1 25678999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 002159 601 VADAGANLIRKS 612 (958)
Q Consensus 601 v~eA~~~a~~r~ 612 (958)
|++|.+.++++.
T Consensus 261 ~~~A~~~a~~~~ 272 (355)
T 2qp9_X 261 VKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.90 E-value=7.5e-23 Score=226.19 Aligned_cols=262 Identities=18% Similarity=0.266 Sum_probs=185.1
Q ss_pred CCCcCCchHHHHHHHHH-HhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILASI-LAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~i-i~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~ 441 (958)
++.++... ..+.+.+. ..|..+|..+ +..++.++||+||||||||++++++|++++.+++.++|.++.+.+.++.
T Consensus 15 ~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~ 93 (301)
T 3cf0_A 15 EDIGGLED-VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 93 (301)
T ss_dssp GGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC
T ss_pred HHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch
Confidence 44555554 44555544 4566777654 4677889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|+.+....|+++||||+|.+...+....... .......+..++..+.. ....
T Consensus 94 ~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~~~~lL~~l~~--------------------~~~~ 152 (301)
T 3cf0_A 94 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-GGAADRVINQILTEMDG--------------------MSTK 152 (301)
T ss_dssp TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS-SCSCCHHHHHHHHHHHS--------------------SCTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc-chHHHHHHHHHHHHhhc--------------------ccCC
Confidence 89999999999988999999999999987543211100 00111223333433311 1124
Q ss_pred CcEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~ 599 (958)
.+++||+|||+++.+++++++ ||...+.++.|+.++|.+|++.+++.... ..+++ ++.++..++||+++|+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHHHHHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHHHHHH
Confidence 679999999999999999988 99999999999999999999999976543 23333 577888999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
+|++|.+.++++........... ........ ..........++++||..|+...+
T Consensus 228 l~~~a~~~a~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 228 ICQRACKLAIRESIESEIRRERE-RQTNPSAM--EVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh-cccccccc--cccccccCCccCHHHHHHHHHHcC
Confidence 99999998887643211100000 00000000 000001124688999999998664
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.90 E-value=3.3e-23 Score=241.10 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=164.0
Q ss_pred CCCcCCchHHHHHHHH-HHhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccccchhch
Q 002159 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKT 441 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~-ii~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~l-g~~~~~I~~~~l~s~~~g~~ 441 (958)
++.+++.. ..+.|.+ ++.|..+|..|. ..++.+|||+||||||||++|+++|+++ +.+++.++++++.+.+.++.
T Consensus 134 ~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 134 SDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GGSCSCHH-HHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------C
T ss_pred HHhcCHHH-HHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchH
Confidence 44555554 4455554 456777776653 3567899999999999999999999999 89999999999999988988
Q ss_pred HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc
Q 002159 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (958)
Q Consensus 442 e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 521 (958)
+..++.+|..+....|+||||||+|.+...+... ......+ ++..++..+. +. ....
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~---~~~~lL~~l~--------~~-------~~~~ 269 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----ESEAARR---IKTEFLVQMQ--------GV-------GVDN 269 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-----CCGGGHH---HHHHHHTTTT--------CS-------SCCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-----cccHHHH---HHHHHHHHHh--------Cc-------ccCC
Confidence 8899999999998999999999999998743211 1112222 2233332210 00 0125
Q ss_pred CcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 522 ~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
.+++||+|||.++.++++++|||...+.++.|+.++|.+|++.++..... .. .+..+..++..+.||+++|+..||
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---EC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67999999999999999999999999999999999999999999876543 11 256789999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 002159 602 ADAGANLIRKSN 613 (958)
Q Consensus 602 ~eA~~~a~~r~~ 613 (958)
++|.+.++++..
T Consensus 346 ~~a~~~a~r~~~ 357 (444)
T 2zan_A 346 RDALMQPVRKVQ 357 (444)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988743
No 46
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2.1e-25 Score=260.73 Aligned_cols=206 Identities=22% Similarity=0.340 Sum_probs=145.8
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC--Cceeeeccchhh
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELI 745 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~--~~~i~v~~~~l~ 745 (958)
..|...|++++|.+.+++.+...+. .+..+..++.++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~-------~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVE-------LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHH-------HHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred cChhhchhhccCHHHHHHHHHHHHH-------HHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3466779999999999987765442 2334666788999999999999999999999999 999999999999
Q ss_pred hccccchhhhHHHHHHHH---HhcCCcEEEEcccccccCCCCCCCCCc--chHH---------------HHHHHHHHhhc
Q 002159 746 NMYIGESEKNVRDIFQKA---RSARPCVIFFDELDSLAPARGASGDSG--GVMD---------------RVVSQMLAEID 805 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A---~~~~P~ILfiDEiD~l~~~r~~~~~~~--~~~~---------------rv~~~LL~~ld 805 (958)
++|+|+++. ++++|+.| +...||||||||+|+++++|+....++ .... ++.++++..|+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999998 99999999 888999999999999999886542211 0111 22344666665
Q ss_pred --CCCCCCCcEEEEEecCCCCCCChhhcCcCCccc--eeeccCCC-CHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCC
Q 002159 806 --GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK--LLYVGVNS-DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPN 880 (958)
Q Consensus 806 --g~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~--~I~v~~pp-d~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g 880 (958)
++. ..+.++|++|||+++.+|++++||||||+ .+++|+|. +.+.|.+|++.++.. +++.++.+ |+|
T Consensus 182 ~~~~~-~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a~~-t~g 252 (456)
T 2c9o_A 182 KERVE-AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVANAR-PQG 252 (456)
T ss_dssp HTTCC-TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC------
T ss_pred hccCC-CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHHHh-CCC
Confidence 332 23446667999999999999999999999 77888732 346677777655532 68889998 599
Q ss_pred CCHHHHHHHHHH
Q 002159 881 FTGADMYALCAD 892 (958)
Q Consensus 881 ~sGaDi~~l~~~ 892 (958)
|+||.++|..
T Consensus 253 --gadl~~l~~~ 262 (456)
T 2c9o_A 253 --GQDILSMMGQ 262 (456)
T ss_dssp ------------
T ss_pred --hhHHHHHHhh
Confidence 9999999954
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.89 E-value=6.5e-22 Score=230.32 Aligned_cols=236 Identities=20% Similarity=0.275 Sum_probs=177.9
Q ss_pred CCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+..+.+ +..+.+.+++..+.++..+ +.+.+.+|||+||||||||+++|++|++++.+++.++|.++...+.+....
T Consensus 17 di~G~~-~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 17 DVGGAE-EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp GCCSCH-HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHH
T ss_pred HhCCcH-HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHH
Confidence 344444 4566777777665555433 456778999999999999999999999999999999999999888888889
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++..|..|....|+||||||+|.+...+.... .+...+....+.+++. .+++.....+
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-----~g~~~~~~~~l~~LL~----------------~ld~~~~~~~ 154 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-----GGGHDEREQTLNQLLV----------------EMDGFDSKEG 154 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC--------------CHHHHHHHHHHH----------------HHHHSCGGGT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhccccc-----CcCcHHHHHHHHHHHH----------------HHhccCCCCC
Confidence 999999999999999999999999987432110 0111111222222211 1111122568
Q ss_pred EEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
++||++||+++.++++++| ||++.+.++.|+.++|.+|++.++++... ..+++ +..++..|.||+++|+..++
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCcHHHHHHHH
Confidence 9999999999999999987 99999999999999999999999976543 33433 56799999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 602 ~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
.+|+..+.++. ...++.+|+..++.+..
T Consensus 230 ~~Aal~A~~~~----------------------------~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 230 NEAALLAAREG----------------------------RDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC----------------------------CCeecHHHHHHHHHHHh
Confidence 99988776431 23567788888887653
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=1.9e-21 Score=209.50 Aligned_cols=235 Identities=19% Similarity=0.262 Sum_probs=175.9
Q ss_pred CCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+.++.+ +..+.+...+..+.++..+ +...+.+++|+|||||||||+++++|++++.+++.++|.++...+.+....
T Consensus 13 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~ 91 (257)
T 1lv7_A 13 DVAGCD-EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91 (257)
T ss_dssp GSCSCH-HHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHH
T ss_pred HhcCcH-HHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHH
Confidence 344444 4556666666555555443 345678899999999999999999999999999999999998888888889
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++.+|+.+....|+++|+||+|.+...+.... ..........+..++..+. +.....+
T Consensus 92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~--------------------~~~~~~~ 150 (257)
T 1lv7_A 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMD--------------------GFEGNEG 150 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHH--------------------TCCSSSC
T ss_pred HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhh--------------------CcccCCC
Confidence 999999999988999999999999986432110 0000001122333333321 1112567
Q ss_pred EEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv 601 (958)
++||++||.++.+++++++ ||.+.+.++.|+.++|.+|++.++++.+. ..+.. +..++..+.||+++|+..++
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999988 89999999999999999999999876542 33332 46688999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhh
Q 002159 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (958)
Q Consensus 602 ~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~ 656 (958)
++|...+..+. ...++.+|+.+++...
T Consensus 226 ~~a~~~a~~~~----------------------------~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 226 NEAALFAARGN----------------------------KRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----------------------------CCcccHHHHHHHHHHH
Confidence 99988776531 2357888998888765
No 49
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1.1e-21 Score=214.30 Aligned_cols=237 Identities=20% Similarity=0.329 Sum_probs=179.8
Q ss_pred CCcCCchHHHHHHHHHH-hhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 367 DFVPLQGDTVKILASIL-APTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~ii-~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
+.++.+ +..+.+...+ .+..++..+ +...+.++||+||||||||++++++|++++.+++.+++.++...+.+...
T Consensus 18 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 18 DIGGLE-KQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHH
T ss_pred HhcCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHH
Confidence 344444 3445555444 444554433 35677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++..|..+....|+++||||+|.+...+..... .........+..++..+. +.....
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~--------------------~~~~~~ 155 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT-GGDREVQRTLMQLLAEMD--------------------GFDARG 155 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC-GGGGHHHHHHHHHHHHHH--------------------TTCSSS
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC-CccHHHHHHHHHHHHHhh--------------------CCCCCC
Confidence 99999999999999999999999999874322110 001111222333333221 112256
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
+++||+|||.++.+++++++ ||...+.++.|+.++|.+|++.++..... ..+. .+..++..+.||+++|+..|
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDV----NLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcC----CHHHHHHHcCCCCHHHHHHH
Confidence 89999999999999999998 99999999999999999999999876543 2233 36889999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
+++|...++.+. ...++.+|+.+++.....
T Consensus 231 ~~~a~~~a~~~~----------------------------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 231 CTEAGMNAIREL----------------------------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----------------------------cCcCCHHHHHHHHHHHHh
Confidence 999998887642 235778899998887653
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.88 E-value=9.1e-22 Score=211.82 Aligned_cols=221 Identities=17% Similarity=0.256 Sum_probs=159.0
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
++.++.. +..+.+.+.+....++..+ +...+.++||+||||||||++++++|++++.+++.++|.++...+.+...
T Consensus 6 ~~i~G~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 2qz4_A 6 KDVAGMH-EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84 (262)
T ss_dssp TSSCSCH-HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHH
T ss_pred HHhCCHH-HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhH
Confidence 3344444 4566777766666666544 35677899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++..|+.+....|+++||||+|.+...+...............+..++..+.. .....
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------------------~~~~~ 144 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG--------------------MGTTD 144 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT--------------------CCTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC--------------------cCCCC
Confidence 9999999999988899999999999976432211000011112233344433311 11246
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
++++|++||.++.+++++++ ||+..+.++.|+.++|.+|++.+++.... +......+..++..+.||+++|+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 89999999999999999998 99999999999999999999999876543 33334456889999999999999999
Q ss_pred HHHHHHHHHH
Q 002159 601 VADAGANLIR 610 (958)
Q Consensus 601 v~eA~~~a~~ 610 (958)
+++|...+.+
T Consensus 222 ~~~a~~~a~~ 231 (262)
T 2qz4_A 222 CNEAALHAAR 231 (262)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHHHH
Confidence 9998776654
No 51
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.4e-21 Score=215.77 Aligned_cols=249 Identities=16% Similarity=0.252 Sum_probs=180.8
Q ss_pred CCcCCchHHHHHHHHH-HhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~i-i~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+.++... ..+.+.+. ..|..++..+. ...+.+|||+||||||||++++++|++++.+++.++|.++.+.+.++.+.
T Consensus 85 ~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 85 DIAGVEF-AKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp GSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHH
T ss_pred HhCChHH-HHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHH
Confidence 3444443 44455544 45666666542 35678999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++.+|..+....|++|||||+|.+...+... ........+..++..+... ......+
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~------------------~~~~~~~ 221 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDG----EHESSRRIKTEFLVQLDGA------------------TTSSEDR 221 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----------------------CCCC
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCC----cchHHHHHHHHHHHHHhcc------------------cccCCCC
Confidence 99999999998899999999999998643211 0111111222333332110 0112468
Q ss_pred EEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
++||+|||.++.+++++++||...+.++.|+.++|.+|++.+++.... .. .+..++.++..+.||+++|+..||++
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l-~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CL-SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CC-CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---Cc-cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865432 12 24568899999999999999999999
Q ss_pred HHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 604 AGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 604 A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
|...++++....... . + .......++.+||..++...++
T Consensus 298 a~~~~ir~l~~~~~~------~----~------~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 298 ASLGPIRSLQTADIA------T----I------TPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHTHHHHHCCC--------------------------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhhhhhc------c----c------cccccCCcCHHHHHHHHHhcCC
Confidence 988887643211000 0 0 0012357889999999987753
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=9.1e-21 Score=208.42 Aligned_cols=249 Identities=22% Similarity=0.306 Sum_probs=177.4
Q ss_pred CCcCCchHHHHHHHHH-HhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~i-i~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+.++.. +..+.+.+. ..|..+|..+. ..++.++||+|||||||||+++++|++++.+++.++|.++.+.+.+....
T Consensus 22 ~i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~ 100 (297)
T 3b9p_A 22 DIAGQD-VAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK 100 (297)
T ss_dssp GSCCCH-HHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH
T ss_pred HhCChH-HHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHH
Confidence 344444 344555544 46666665542 24568999999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCc
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ 523 (958)
.++..|..+....|+++||||+|.+...+.... ..........++..+... .......+
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~-----------------~~~~~~~~ 159 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSE----HEASRRLKTEFLVEFDGL-----------------PGNPDGDR 159 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHC-----------------C------C
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCc----chHHHHHHHHHHHHHhcc-----------------cccCCCCc
Confidence 999999999989999999999999986432111 011111122233222110 00011357
Q ss_pred EEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 524 VLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
++||++||.++.+++++++||...+.++.|+.++|..|++.++..... .. ....++.++..+.||+++|+..|+++
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~-~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PL-DTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CS-CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865432 12 24568899999999999999999999
Q ss_pred HHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 604 AGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 604 A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
|...++++........ . .......++.+||..|+...+
T Consensus 236 a~~~a~r~~~~~~~~~----------~------~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 236 AALEPIRELNVEQVKC----------L------DISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HTTHHHHTCC------------------------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhhhccc----------c------cccccCCcCHHHHHHHHHHcC
Confidence 9988877532111000 0 000134688999999887653
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=214.48 Aligned_cols=247 Identities=21% Similarity=0.312 Sum_probs=169.7
Q ss_pred CCcCCchHHHHHHHHH-HhhcCCCcccC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH
Q 002159 367 DFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (958)
Q Consensus 367 ~~~~l~~~~~k~L~~i-i~p~l~p~~~~--~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~ 443 (958)
+.++... ..+.+... ..+..++..+. ...+.+|||+||||||||++|+++|.+++.+++.++|.++.+.+.++.+.
T Consensus 116 ~iiG~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 194 (389)
T 3vfd_A 116 DIAGQDL-AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEK 194 (389)
T ss_dssp GSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHH
T ss_pred HhCCHHH-HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHH
Confidence 3444443 44444444 46666665442 24567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHH-HHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 444 ~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v-~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
.++.+|..+....|++|||||+|.+...+... .. .....+ ..++..+.. .......
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~-~~~~~~~~~ll~~l~~------------------~~~~~~~ 251 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREG----EH-DASRRLKTEFLIEFDG------------------VQSAGDD 251 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC-------------CTHHHHHHHHHHHHHH------------------HC-----
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cc-hHHHHHHHHHHHHhhc------------------ccccCCC
Confidence 99999999999999999999999997643211 00 111111 222222110 0011246
Q ss_pred cEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~ 602 (958)
+++||+|||.++.+++++++||...+.++.|+.++|.+|++.++..... .. .+..+..++..+.||+++|+..|++
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l-~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PL-TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CS-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998866432 12 2456789999999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 603 DAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 603 eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
.|...++++......... .......++.+||..++....
T Consensus 328 ~a~~~~~rel~~~~~~~~----------------~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 328 DAALGPIRELKPEQVKNM----------------SASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp HHTTHHHHTSCCC---CC----------------SSSCCCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhhhhhhcc----------------chhhcCCcCHHHHHHHHHHcC
Confidence 998888775322111100 001134678899998887653
No 54
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.85 E-value=9.2e-21 Score=221.90 Aligned_cols=237 Identities=21% Similarity=0.275 Sum_probs=176.8
Q ss_pred CCCcCCchHHHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchH
Q 002159 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (958)
Q Consensus 366 ~~~~~l~~~~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e 442 (958)
++..+.+ +..+.+.+++..+.++..+ +...+.+++|+||||||||||++++|++++..++.+++.++...+.+...
T Consensus 31 ~dv~G~~-~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 31 KDVAGAE-EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp TSSCSCH-HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHH
T ss_pred HHcCCcH-HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHH
Confidence 3344444 4556666666555555433 35667889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcC
Q 002159 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (958)
Q Consensus 443 ~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~ 522 (958)
..++.+|+.+....|+++||||+|.+...+.... .....+....+.+++.. +++.....
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-----~~~~~e~~~~l~~LL~~----------------Ldg~~~~~ 168 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-----GGGNDEREQTLNQLLVE----------------MDGFEKDT 168 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-----TTSSHHHHHHHHHHHHH----------------GGGCCSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-----CCCcHHHHHHHHHHHHH----------------hcccccCc
Confidence 8999999999878899999999999976432110 00112222333333211 11122256
Q ss_pred cEEEEEecCCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 523 ~ViVIaaTn~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
.++++|+||+++.+|++++| ||++.+.++.|+.++|.+|++.++++.. +..+++ +..++..|.||+++|+..+
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFVGADLENL 243 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCCHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCCHHHHHHH
Confidence 78999999999999999988 8999999999999999999999986543 233333 5779999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhc
Q 002159 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 601 v~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~ 657 (958)
+.+|+..+.++. ...++.+|+.+++....
T Consensus 244 v~~Aa~~A~~~~----------------------------~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 244 LNEAALLAAREG----------------------------RRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHHHHHHHTTTC----------------------------CSSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC----------------------------CCccCHHHHHHHHHHHh
Confidence 999887664321 23577888988888764
No 55
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.84 E-value=4.9e-20 Score=198.11 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhhcCCCcc---cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~---~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+....+.++...+-++.. .+...+.+++|+||||||||||++++|+.++..++.+++.++...+.+.....++.+|+
T Consensus 23 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 102 (254)
T 1ixz_A 23 EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 102 (254)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555443333322 23456678999999999999999999999999999999988777667777788999999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.+....|+++++||+|.+...+.... ..........+..++..+. +......++++|+|
T Consensus 103 ~~~~~~~~i~~~Deid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~--------------------g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 103 TAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMD--------------------GFEKDTAIVVMAAT 161 (254)
T ss_dssp HHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHH--------------------TCCTTCCEEEEEEE
T ss_pred HHHhcCCeEEEehhhhhhhcccCccc-cccchHHHHHHHHHHHHHh--------------------CCCCCCCEEEEEcc
Confidence 99877899999999999876432100 0000011122233333221 11124568999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|+++.+|++++| ||+..+.++.|+.++|.+|++.+++.... ..+. .+..++..+.||+++|+..++++|+..+
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDV----DLALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-Cccc----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 89999999999999999999998865432 2233 3577999999999999999999998877
Q ss_pred HH
Q 002159 609 IR 610 (958)
Q Consensus 609 ~~ 610 (958)
.+
T Consensus 237 ~~ 238 (254)
T 1ixz_A 237 AR 238 (254)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=1.6e-21 Score=227.79 Aligned_cols=364 Identities=13% Similarity=0.108 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccchhchHHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg--~~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
+..+.+..++..... +..++.++||+||||||||++|+++|++++ .+++.++++++.+.+.++++. +++.|+.
T Consensus 44 ~~~~~l~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~ 118 (456)
T 2c9o_A 44 NAREACGVIVELIKS----KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRR 118 (456)
T ss_dssp HHHHHHHHHHHHHHT----TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHH
Confidence 344555554443322 234567899999999999999999999999 899999999999999999887 9999999
Q ss_pred h---hcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccc---ccCCCCchhh--hhhhhcCc
Q 002159 452 A---QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE---ESHGYFPVKE--IEKICRQQ 523 (958)
Q Consensus 452 A---~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~---~~~g~~~~~~--~~~~~~~~ 523 (958)
| ....|+++|+||+|.++..+....... .. ....++..++...+.+ .......... .+......
T Consensus 119 a~~~~~~~~~il~iDEid~l~~~r~~~~~~~-----~~---~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 190 (456)
T 2c9o_A 119 AIGLRIKETKEVYEGEVTELTPCETENPMGG-----YG---KTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDV 190 (456)
T ss_dssp TEEEEEEEEEEEEEEEEEEEEEC----------------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEE
T ss_pred HHhhhhcCCcEEEEechhhcccccCCCCCCC-----cc---hHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCE
Confidence 9 778899999999999998553221000 00 0000111100000000 0000000000 00111334
Q ss_pred EEEEEecCCCCCCChhhhc--cccE--EEEcCCC--CHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhH
Q 002159 524 VLLVAAADSSEGLPPTIRR--CFSH--EISMGPL--TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDL 597 (958)
Q Consensus 524 ViVIaaTn~~~~Ld~alrr--rf~~--eIsig~P--de~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL 597 (958)
++|+||||+++.++++++| ||+. .+.++.| +.++|.+|++.++. ..++.++..+.| ++|+
T Consensus 191 v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------------~dl~~~a~~t~g--gadl 256 (456)
T 2c9o_A 191 IYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------------HDLDVANARPQG--GQDI 256 (456)
T ss_dssp EEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------------HHHHHTC-----------
T ss_pred EEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------------HHHHHHHHhCCC--hhHH
Confidence 5566999999999998875 7887 4555666 44778887765441 247889999999 9999
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCcccccc
Q 002159 598 HALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDV 677 (958)
Q Consensus 598 ~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di 677 (958)
..||....... . ..+..++
T Consensus 257 ~~l~~~i~~p~--~-----------------------------------~~I~~~l------------------------ 275 (456)
T 2c9o_A 257 LSMMGQLMKPK--K-----------------------------------TEITDKL------------------------ 275 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhcccc--h-----------------------------------hhHHHHH------------------------
Confidence 98875311000 0 0000000
Q ss_pred ccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHH
Q 002159 678 GGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVR 757 (958)
Q Consensus 678 ~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr 757 (958)
.+.+.+ .+.
T Consensus 276 ------r~~I~~-----------------------------------------------------------------~l~ 284 (456)
T 2c9o_A 276 ------RGEINK-----------------------------------------------------------------VVN 284 (456)
T ss_dssp -------CHHHH-----------------------------------------------------------------HHH
T ss_pred ------HHHHHH-----------------------------------------------------------------HHH
Confidence 000000 000
Q ss_pred HHHHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe---------cC---CCC
Q 002159 758 DIFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA---------SN---RPD 824 (958)
Q Consensus 758 ~lf~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a---------TN---rp~ 824 (958)
+.++.+. ...|.|+||||+|.+. ....+.|++.|+.- ..+++|++| |+ .|+
T Consensus 285 ~~~~~g~~~v~~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 285 KYIDQGIAELVPGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp HHHHTTSEEEEECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEET
T ss_pred HHHHhccccccceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccc
Confidence 0000000 0112599999999985 45788999988854 234655555 32 277
Q ss_pred CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002159 825 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 903 (958)
Q Consensus 825 ~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~ 903 (958)
.|+|.++. ||.. +.++ |++.++...|++...+..... .+..+..++..+ .+-+.++.-.+++.|...|..+.
T Consensus 349 ~l~~~i~s--R~~~-~~~~-~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a-~~g~~r~a~~ll~~a~~~A~~~~-- 421 (456)
T 2c9o_A 349 GIPLDLLD--RVMI-IRTM-LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG-TKTTLRYSVQLLTPANLLAKING-- 421 (456)
T ss_dssp TCCHHHHT--TEEE-EECC-CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-HHSCHHHHHHTHHHHHHHHHHTT--
T ss_pred cCChhHHh--hcce-eeCC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHhhcC--
Confidence 89999999 9987 5888 488999999998876543322 122345566652 12377788888888877776432
Q ss_pred ccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 904 SSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
...|+.+|+.+|+..+
T Consensus 422 ---------------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 ---------------KDSIEKEHVEEISELF 437 (456)
T ss_dssp ---------------CSSBCHHHHHHHHHHS
T ss_pred ---------------CCccCHHHHHHHHHHh
Confidence 1258999999998875
No 57
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.83 E-value=6.2e-20 Score=186.47 Aligned_cols=177 Identities=24% Similarity=0.348 Sum_probs=131.9
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002159 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (958)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~ 144 (958)
..+++|+||+.++.| |+|.|++|..+|.+.|.|+.++|++|||+.||.|.|+|.. +|.+.++|+...
T Consensus 9 ~~~~~~~~~~~~~~p-~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr---~k~Tva~v~~~~--------- 75 (187)
T 3tiw_A 9 SDDLSTAILKQKSRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (187)
T ss_dssp -------------CC-CEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCC---CCeEEEEEEECC---------
Confidence 368999999999999 9999999999999999999999999999999999999754 668888885332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002159 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (958)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (958)
.++.+++.|+-.++.|+|+..|+
T Consensus 76 -------------------------~~~~g~Irid~~~R~N~gV~iGD-------------------------------- 98 (187)
T 3tiw_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (187)
T ss_dssp -------------------------TSCTTEEEECHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEeCHHHHhhcCCCCCC--------------------------------
Confidence 23568999999999999999985
Q ss_pred eeEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002159 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (958)
Q Consensus 225 ~~~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~ 303 (958)
.|+++|+.++ ++|++++ + .|..++++++.++ +|+.+|++||. .+|||.+||+|.|..
T Consensus 99 --~V~V~~~~~v-~~A~~V~--L--aP~~~~i~~i~~~----------~~~~~lk~~l~~~~rpV~~GD~i~v~~----- 156 (187)
T 3tiw_A 99 --VISIQPCPDV-KYGKRIH--V--LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRG----- 156 (187)
T ss_dssp --EEEEEECTTC-EECSEEE--E--EECCCC-----CC----------HHHHTHHHHHTTTCCEEETTCEEEEEC-----
T ss_pred --EEEEEECCCC-CCceEEE--E--eccccchhhccch----------hHHHHHHHHhccCCceeeCCCEEEEcc-----
Confidence 6889999754 7999644 4 7888888778777 89999999998 599999999999985
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcC
Q 002159 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (958)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~ 350 (958)
.++.+.|+|++++|++. ++| ...|.+.+.|
T Consensus 157 --------------~~~~v~f~Vv~t~P~~~--v~V-~~~T~I~~eg 186 (187)
T 3tiw_A 157 --------------GMRAVEFKVVETDPSPY--CIV-APDTVIHCEG 186 (187)
T ss_dssp --------------SSSEEEEEEEEEESSSE--EEC-CTTCEEECCC
T ss_pred --------------CCCEEEEEEEEecCCCC--EEE-CCCcEEEecC
Confidence 35789999999999742 222 4556665544
No 58
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.83 E-value=2.3e-22 Score=260.24 Aligned_cols=154 Identities=22% Similarity=0.294 Sum_probs=114.7
Q ss_pred CCCCccccccccccccccccceeeeccccc----------hhhhhc-------------------CCCCCCcEEEecCCC
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLH----------KDLFSS-------------------GLRKRSGVLLYGPPG 718 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~----------~~~~~~-------------------~i~~~~~iLL~GppG 718 (958)
..+.+.|++++|++.+|+.+.+.+.||+.+ ++.|.. |+++++.+++|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345689999999999999999999998844 333322 244555599999999
Q ss_pred ChhHHHHHHHHHHcCCc-----eeeecc--chhh--------hccccc----hhhhHHHHHHHHHhcCCcEEEEcccccc
Q 002159 719 TGKTLLAKAVATECSLN-----FLSVKG--PELI--------NMYIGE----SEKNVRDIFQKARSARPCVIFFDELDSL 779 (958)
Q Consensus 719 tGKTtLakaiA~~~~~~-----~i~v~~--~~l~--------~~~~Ge----se~~vr~lf~~A~~~~P~ILfiDEiD~l 779 (958)
||||+||++++.+...+ |+.+.. ++++ ++|+++ +|+.++.+|.+|++.+||++||||+|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999988655 777765 4555 678888 8999999999999999999999999999
Q ss_pred cCC---CCCCCC-CcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 780 APA---RGASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 780 ~~~---r~~~~~-~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
++. +|..++ ..++..|+++|+|++|+++.. ..+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEE-Eeccc
Confidence 998 433332 237889999999999998754 4577777 77775
No 59
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.82 E-value=3.1e-19 Score=194.73 Aligned_cols=211 Identities=20% Similarity=0.268 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhhcCCCcc---cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHH
Q 002159 374 DTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~---~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
+..+.+.++...+-++.. .+...+.+++|+||||||||||++++++.++..++.+++.++...+.+.....+..+|+
T Consensus 47 ~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 126 (278)
T 1iy2_A 47 EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 126 (278)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHH
Confidence 345555555544333322 23456677999999999999999999999999999999988777666777788899999
Q ss_pred HhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 451 ~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.+....|+++++||+|.+...+... ...........+..++.++. +......++++++|
T Consensus 127 ~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~ls--------------------gg~~~~~~i~~a~t 185 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMD--------------------GFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHT--------------------TCCTTCCEEEEEEE
T ss_pred HHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHh--------------------CCCCCCCEEEEEec
Confidence 9987889999999999987633110 00000011122233333221 11124568999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|.++.+|+++++ ||+..+.++.|+.++|.+|++.+++.... ..+. .+..++..++||+++|+..++++|...+
T Consensus 186 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~la~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDV----DLALLAKRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-Cccc----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988 89999999999999999999998865432 2233 3577999999999999999999998776
Q ss_pred HH
Q 002159 609 IR 610 (958)
Q Consensus 609 ~~ 610 (958)
..
T Consensus 261 ~~ 262 (278)
T 1iy2_A 261 AR 262 (278)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 60
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.81 E-value=2.6e-19 Score=185.06 Aligned_cols=177 Identities=24% Similarity=0.348 Sum_probs=135.7
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002159 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (958)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~ 144 (958)
..+++|+||+.++.| |++.|++|..+|.+.|.|+..+|++|||+.||.|+|+|.. +|.+.++|+...
T Consensus 12 ~~~~~~~~~~~~~~p-~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr---~k~Tva~v~~~~--------- 78 (211)
T 3qwz_A 12 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXK---RREAVCIVLSDD--------- 78 (211)
T ss_dssp --------------C-EEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCC---CCcEEEEEEeCC---------
Confidence 468999999999999 9999999999999999999999999999999999999754 668888886332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002159 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (958)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (958)
.++.+++.|+-.++.|||+..|+
T Consensus 79 -------------------------~~~~g~Irid~~~R~N~gV~iGD-------------------------------- 101 (211)
T 3qwz_A 79 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 101 (211)
T ss_dssp -------------------------TSCTTEEEECHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEeCHHHHhhcCCCCCC--------------------------------
Confidence 23568999999999999999985
Q ss_pred eeEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002159 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (958)
Q Consensus 225 ~~~~~~~~~~~~p~~~~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~ 303 (958)
.|+++|+.++ ++|+++++ .|..++++++.++ +|+.+|++||. .+|||.+||+|.|..
T Consensus 102 --~V~V~~~~~v-~~A~~V~L----aP~~~~i~~i~~~----------~~~~~lk~~l~~~~rPV~~GD~i~v~~----- 159 (211)
T 3qwz_A 102 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRG----- 159 (211)
T ss_dssp --EEEEEECTTC-CBCSEEEE----EEBGGGCTTCCSC----------HHHHTTHHHHTTCCEEEETTCEEECCC-----
T ss_pred --EEEEEECCCC-CCceEEEE----eccCcchhccCch----------hHHHHHHHHHhhCCceeecCCEEEEcc-----
Confidence 6889999755 79996444 7888888888777 89999999998 599999999999874
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEEcC
Q 002159 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (958)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~ 350 (958)
.++.+.|+|++++|++ .++| ...|.+.+.+
T Consensus 160 --------------~~~~v~f~Vv~t~P~g--~viV-~~~T~I~~~~ 189 (211)
T 3qwz_A 160 --------------GMRAVEFXVVETDPSP--YCIV-APDTVIHCEG 189 (211)
T ss_dssp --------------TTSCCEEEEEEEESSS--EEEE-CTTCEEECCS
T ss_pred --------------CCcEEEEEEEeecCCC--CEEE-CCCcEEEEcC
Confidence 3467999999999974 2333 4556776654
No 61
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=3.8e-20 Score=204.39 Aligned_cols=238 Identities=19% Similarity=0.213 Sum_probs=174.0
Q ss_pred ccccccccccccccceeeeccccchhhhh-cCC---CCCCcEEEecCCCChhHHHHHHHHHHc-------CCceeeeccc
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFS-SGL---RKRSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGP 742 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~-~~i---~~~~~iLL~GppGtGKTtLakaiA~~~-------~~~~i~v~~~ 742 (958)
|.+++|++.+++.+.+.+.++.. +..+. .|+ .++.+++|+||||||||++|+++|..+ ..+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 34799999999999887765442 22222 233 344569999999999999999999988 3489999999
Q ss_pred hhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 743 ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 743 ~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
++.+.|+|..+..++.+|..+ .++||||||+|.++..++. ......+++.|+..|+.. ..+++||++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN---RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC---CCCEEEEEeCCh
Confidence 999999999999999999887 4679999999999866542 122367888999988854 357888999987
Q ss_pred CC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-CHHHHHhhC-----CCC-CCHHHHHHHH
Q 002159 823 PD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKC-----PPN-FTGADMYALC 890 (958)
Q Consensus 823 p~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-~l~~la~~~-----t~g-~sGaDi~~l~ 890 (958)
++ .++|+|++ ||+..++++. |+.+++..|++.++++....-+. .+..++..+ ... -+++++.++|
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~-~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPD-YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECC-CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCC-cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 64 35799999 9999999995 88999999999998865433222 234444431 022 2479999999
Q ss_pred HHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHH
Q 002159 891 ADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 930 (958)
Q Consensus 891 ~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~a 930 (958)
+.|...+..|.+..... .....+-..++.+||..+
T Consensus 256 ~~a~~~~~~r~~~~~~~-----~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 256 DRARLRQANRLFTASSG-----PLDARALSTIAEEDIRAS 290 (309)
T ss_dssp HHHHHHHHHHHHHC--------CEEHHHHHEECHHHHHTS
T ss_pred HHHHHHHHHHHHhccCC-----CCCHHHHhhccHHHhccc
Confidence 99999988887642110 111112235777777764
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.79 E-value=1.4e-20 Score=203.80 Aligned_cols=209 Identities=18% Similarity=0.256 Sum_probs=151.9
Q ss_pred HHHHHHHHHhhcCCCccc---CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHH
Q 002159 375 TVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~---~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~ 451 (958)
..+.+.+++..+.++..+ +.+.+.+++|+||||||||++++++|++++.+++.++|.++...+.+.....++..|+.
T Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 98 (268)
T 2r62_A 19 AKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFET 98 (268)
T ss_dssp THHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHH
T ss_pred HHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHH
Confidence 445666666555555443 35667789999999999999999999999999999999998887777777777888999
Q ss_pred hhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhh-hhcCcEEEEEec
Q 002159 452 AQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK-ICRQQVLLVAAA 530 (958)
Q Consensus 452 A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~-~~~~~ViVIaaT 530 (958)
+....|+++||||+|.+...+...+......... ..+.++... +.+. ....+++||+||
T Consensus 99 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~----~~~~~ll~~----------------l~~~~~~~~~v~vi~tt 158 (268)
T 2r62_A 99 AKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDERE----QTLNQLLAE----------------MDGFGSENAPVIVLAAT 158 (268)
T ss_dssp HHHSCSCEEEESCGGGTTC----------CCCSC----SSTTTTTTT----------------TTCSSCSCSCCEEEECB
T ss_pred HHhcCCeEEEEeChhhhcccccccccCCCchhHH----HHHHHHHHH----------------hhCcccCCCCEEEEEec
Confidence 9888999999999999976431111000000000 001111111 1111 124569999999
Q ss_pred CCCCCCChhhhc--cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 531 n~~~~Ld~alrr--rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
|.++.+++++++ ||...+.++.|+.++|.++++.+++.... ..+.+ ++.++..+.||+++|+..++++|...+
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~g~~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDVN----LQEVAKLTAGLAGADLANIINEAALLA 233 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-CSSCC----TTTTTSSSCSSCHHHHHHHHHHHHHTT
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-CCccC----HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988 89999999999999999999999876533 22332 466888999999999999999887654
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.78 E-value=8.2e-19 Score=193.09 Aligned_cols=186 Identities=13% Similarity=0.191 Sum_probs=127.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHh----hcCCCeEEeecchhhh
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTA----QSYSPTILLLRDFDVF 468 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A----~~~~P~IL~iDeid~L 468 (958)
+.+.+.++||+||||||||++++++|+++|.+++.++|.++.+.+.|+.+..+++.|..| +...|+|+||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 356778999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhc--cccE
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSH 546 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrr--rf~~ 546 (958)
.+.+... .........+...|-++++.... ...+ .........+++||+|||+++.+|++++| ||+.
T Consensus 112 ~~~~~~~---~~~~~~~~~v~~~Ll~~ld~~~~---~~~~-----~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~ 180 (293)
T 3t15_A 112 AGRMGGT---TQYTVNNQMVNATLMNIADNPTN---VQLP-----GMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEE
T ss_pred cCCCCCC---ccccchHHHHHHHHHHHhccccc---cccc-----cccccccCCCcEEEEecCCcccCCHHHhCCCCCce
Confidence 8733211 11111223343333333321100 0000 00011235679999999999999999987 7877
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~L 600 (958)
.+. .|+.++|.+|++.++... +++ ++.++..+.||+++|+.++
T Consensus 181 ~i~--~P~~~~r~~Il~~~~~~~-----~~~----~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 181 FYW--APTREDRIGVCTGIFRTD-----NVP----AEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp EEE--CCCHHHHHHHHHHHHGGG-----CCC----HHHHHHHHHHSCSCCHHHH
T ss_pred eEe--CcCHHHHHHHHHHhccCC-----CCC----HHHHHHHhCCCCcccHHHH
Confidence 776 579999999999887533 222 4678888999999999865
No 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=5.9e-20 Score=211.04 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=81.2
Q ss_pred cccccccccccccceeeeccccchhhhhc-C-CCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-ccccc
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSS-G-LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGE 751 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~-~-i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~Ge 751 (958)
++|+|++.+|+.+...+..++.++..+.. . -.++.+++|+||||||||++|+++|+.++.+|+.++++.+.+ .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999998877666555543331 1 124678999999999999999999999999999999999988 59996
Q ss_pred -hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe-cCCCCCCChh
Q 002159 752 -SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA-SNRPDLIDPA 829 (958)
Q Consensus 752 -se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a-TNrp~~ldpa 829 (958)
.+..++.+|..|+... ++||++.+.... .++..++++++||.+|||+... ..+ +++ ||+|+.||+|
T Consensus 95 d~e~~lr~lf~~a~~~~----~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~-~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLV----RQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGE-VEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHHH----HHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcc----hhhhhhhhhccc-----hhhHHHHHHHHHHHHhhccccc-ccc--ccccccCHHHHHHH
Confidence 7899999999997753 489988775322 2345689999999999998642 333 454 9999999999
Q ss_pred hcCcCCccceeeccCCCCHH-HHHHHH
Q 002159 830 LLRPGRFDKLLYVGVNSDVS-YRERVL 855 (958)
Q Consensus 830 LlrpgRfd~~I~v~~ppd~~-~r~~Il 855 (958)
|+||||||+.|++++ |+.. .|.+|+
T Consensus 163 L~rggr~D~~i~i~l-P~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDV-SAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcC-CCCccchhhhh
Confidence 999999999999998 5554 677775
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.75 E-value=5.1e-18 Score=192.00 Aligned_cols=235 Identities=20% Similarity=0.247 Sum_probs=164.0
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccchhhh
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELIN 746 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~~l~~ 746 (958)
.|...|+++.|.+..++.+.... ..+..+..++.+++|+||||||||++|+++|..++. +|+.+++.++.+
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~-------~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVL-------EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHH-------HHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHH-------HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 35556999999998877654322 223335555789999999999999999999999875 788887766444
Q ss_pred cccc-------------------------------------------------chhhhHHHHHHHHHh---------cCC
Q 002159 747 MYIG-------------------------------------------------ESEKNVRDIFQKARS---------ARP 768 (958)
Q Consensus 747 ~~~G-------------------------------------------------ese~~vr~lf~~A~~---------~~P 768 (958)
.+.+ +....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 3332 224455666655543 127
Q ss_pred cEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec-----------CCCCCCChhhcCcCCcc
Q 002159 769 CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS-----------NRPDLIDPALLRPGRFD 837 (958)
Q Consensus 769 ~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT-----------Nrp~~ldpaLlrpgRfd 837 (958)
+||||||+|.+. ....+.|+..++.. ...+++++++ |.++.++++|++ ||.
T Consensus 191 ~vl~IDEi~~l~-------------~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD-------------IESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB-------------HHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC-------------hHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 899999999885 34567777777653 2346555554 357899999999 997
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 002159 838 KLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQ 916 (958)
Q Consensus 838 ~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~ 916 (958)
. +.++. ++.+++..|++...+..... .+..+..+++.+ .+.+.+++.++|+.|+..|..+.
T Consensus 253 ~-i~~~~-~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~-~~G~~r~~~~ll~~a~~~A~~~~--------------- 314 (368)
T 3uk6_A 253 I-VSTTP-YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG-LETSLRYAIQLITAASLVCRKRK--------------- 314 (368)
T ss_dssp E-EEECC-CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTT---------------
T ss_pred E-EEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 7 78985 78999999999887764322 233467788884 55899999999999998886542
Q ss_pred CCcccccHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 002159 917 ADSVVVEYDDFVKVLREL-SPSLSMAELKKYEL 948 (958)
Q Consensus 917 ~~~~~i~~~df~~al~~~-~ps~s~~~l~~y~~ 948 (958)
...|+.+|+.+|+..+ ....+.+.++.|++
T Consensus 315 --~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~ 345 (368)
T 3uk6_A 315 --GTEVQVDDIKRVYSLFLDESRSTQYMKEYQD 345 (368)
T ss_dssp --CSSBCHHHHHHHHHHSBCHHHHHHHHC----
T ss_pred --CCCCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 1368999999999984 33344555555554
No 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=7.7e-19 Score=209.15 Aligned_cols=237 Identities=22% Similarity=0.278 Sum_probs=155.4
Q ss_pred CCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-
Q 002159 668 KVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN- 746 (958)
Q Consensus 668 ~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~- 746 (958)
+....-++++.|++++++.+.+.+.+.. +...+ ++..++|+|||||||||||++||+.++.++..++...+..
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~-----~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQK-----LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHH-----HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH-----hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchh
Confidence 3445557789999999988865442211 11122 5778999999999999999999999999999988765433
Q ss_pred --------ccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCC--------
Q 002159 747 --------MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS-------- 810 (958)
Q Consensus 747 --------~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~-------- 810 (958)
.|+|.....+.+.|..+....| |+||||+|.+.+.+.. ...+.||..||.....
T Consensus 148 ~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 148 SEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCC
Confidence 6788888889999998877766 9999999999865421 2456777777643211
Q ss_pred ----CCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh-----ccCC------CCcCHHHHHh
Q 002159 811 ----SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK-----FKLL------EDVSLYSIAK 875 (958)
Q Consensus 811 ----~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~-----~~~~------~d~~l~~la~ 875 (958)
..+++||+|||+++.+||+|++ ||+ .|+++. |+.+++..|++.++.. ..+. .+..+..++.
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~-~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~ 293 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAG-YTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR 293 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCC-CCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCC-CCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH
Confidence 1568999999999999999999 996 789996 7889999999887622 1221 1223455555
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 876 KCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 876 ~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
..+.....++|++.+..++..|..+.+.. +.....|+.+|+.+++..-+
T Consensus 294 ~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-----------~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 294 YYTREAGVRSLERQLAAICRKAAKAIVAE-----------ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHCCCSSSHHHHHHHHHHHHHHHHHHHTT-----------CCSCCEECTTTTHHHHCSCC
T ss_pred hCChhhchhHHHHHHHHHHHHHHHHHHhc-----------CCcceecCHHHHHHHhCCcc
Confidence 43333344666666666555555554321 11334688899999887543
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=1.3e-17 Score=180.99 Aligned_cols=199 Identities=24% Similarity=0.321 Sum_probs=143.2
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccch----hhhHHHHHHHHHhcCCcEEEEcccccc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES----EKNVRDIFQKARSARPCVIFFDELDSL 779 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ges----e~~vr~lf~~A~~~~P~ILfiDEiD~l 779 (958)
+..++.+++|+||||||||++|+++|..++.+|+.+++++. +.|.. ...++.+|+.+....+++|||||+|.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34567789999999999999999999999999999987653 34433 357889999998888999999999999
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCCh-hhcCcCCccceeeccCCCCHHHHHHHHHHH
Q 002159 780 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP-ALLRPGRFDKLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 780 ~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldp-aLlrpgRfd~~I~v~~ppd~~~r~~Il~~~ 858 (958)
++.+.... .....+++.|...+++......+++||+|||+++.+|+ .+.+ ||+..|++|. .+ .|.+|.+.+
T Consensus 137 ~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~-l~--~r~~i~~i~ 208 (272)
T 1d2n_A 137 LDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPN-IA--TGEQLLEAL 208 (272)
T ss_dssp TTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCC-EE--EHHHHHHHH
T ss_pred hccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCC-cc--HHHHHHHHH
Confidence 87654222 23356778888888876555568999999999999988 4554 9999998864 32 345566555
Q ss_pred HhhccCCCCcCHHHHHhhCCCCC----CHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 859 TRKFKLLEDVSLYSIAKKCPPNF----TGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 859 ~~~~~~~~d~~l~~la~~~t~g~----sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
.+...+ .+.++..+++.+ .|| .-.++.++++.|...| .....++|.+++...
T Consensus 209 ~~~~~~-~~~~~~~l~~~~-~g~~~~g~ir~l~~~l~~a~~~~----------------------~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 209 ELLGNF-KDKERTTIAQQV-KGKKVWIGIKKLLMLIEMSLQMD----------------------PEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTCS-CHHHHHHHHHHH-TTSEEEECHHHHHHHHHHHTTSC----------------------GGGHHHHHHHHHHHT
T ss_pred HhcCCC-CHHHHHHHHHHh-cCCCccccHHHHHHHHHHHhhhc----------------------hHHHHHHHHHHHHHc
Confidence 554443 355688888884 887 3445555544332111 124567788888776
Q ss_pred CCC
Q 002159 935 SPS 937 (958)
Q Consensus 935 ~ps 937 (958)
..+
T Consensus 265 ~~~ 267 (272)
T 1d2n_A 265 GAS 267 (272)
T ss_dssp SCC
T ss_pred CCc
Confidence 554
No 68
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.6e-17 Score=188.24 Aligned_cols=242 Identities=21% Similarity=0.292 Sum_probs=160.4
Q ss_pred cccccccccccceeeeccccchhhh---hcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhc-cccch
Q 002159 677 VGGLEDVKKSILDTVQLPLLHKDLF---SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGES 752 (958)
Q Consensus 677 i~Gl~~vk~~l~e~i~~~l~~~~~~---~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~-~~Ges 752 (958)
+.|.+.+++.+...+.......... .....++.+++|+||||||||++|++||..++.+|+.++++++... |+|+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 5777777777766553221111100 0011256789999999999999999999999999999999988754 88886
Q ss_pred -hhhHHHHHHHH----HhcCCcEEEEcccccccCCCCCCCCCcch-HHHHHHHHHHhhcCCCC-----------------
Q 002159 753 -EKNVRDIFQKA----RSARPCVIFFDELDSLAPARGASGDSGGV-MDRVVSQMLAEIDGLND----------------- 809 (958)
Q Consensus 753 -e~~vr~lf~~A----~~~~P~ILfiDEiD~l~~~r~~~~~~~~~-~~rv~~~LL~~ldg~~~----------------- 809 (958)
+..++.+|..+ ....++||||||+|.+.+.+...+.+... ..++++.||..|+|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56778888776 45567899999999999887654333332 23589999999995310
Q ss_pred -CCCcEEEEEecCCC----------CC-----------------------------------CChhhcCcCCccceeecc
Q 002159 810 -SSQDLFIIGASNRP----------DL-----------------------------------IDPALLRPGRFDKLLYVG 843 (958)
Q Consensus 810 -~~~~v~VI~aTNrp----------~~-----------------------------------ldpaLlrpgRfd~~I~v~ 843 (958)
...++++|+++|.. .. +.|+|+. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12334455555432 11 6788887 999999888
Q ss_pred CCCCHHHHHHHHHH----HHhhc-------cCC---CCcCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcccCCC
Q 002159 844 VNSDVSYRERVLKA----LTRKF-------KLL---EDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSSDSN 908 (958)
Q Consensus 844 ~ppd~~~r~~Il~~----~~~~~-------~~~---~d~~l~~la~~~-t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~ 908 (958)
|++.+.+..|++. +.+.+ ... .+.-++.|++.+ ...+.+++|+++++++...++.+....
T Consensus 255 -pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~---- 329 (363)
T 3hws_A 255 -ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM---- 329 (363)
T ss_dssp -CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC----
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc----
Confidence 4889999999876 33221 111 122256666532 345667899999999998888664211
Q ss_pred CCccccccCCcccccHHHHHHHH
Q 002159 909 SDSSRIDQADSVVVEYDDFVKVL 931 (958)
Q Consensus 909 ~~~~~~~~~~~~~i~~~df~~al 931 (958)
+....+.|+.+++++.+
T Consensus 330 ------~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 330 ------EDVEKVVIDESVIDGQS 346 (363)
T ss_dssp ------CCSEEEECHHHHTTCCS
T ss_pred ------cCCceeEEcHHHHhCcC
Confidence 11133456666665544
No 69
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.70 E-value=1.8e-17 Score=182.37 Aligned_cols=245 Identities=19% Similarity=0.274 Sum_probs=164.8
Q ss_pred ccccccccccccceeeeccccchhhhh--cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhh-ccccch
Q 002159 676 DVGGLEDVKKSILDTVQLPLLHKDLFS--SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGES 752 (958)
Q Consensus 676 di~Gl~~vk~~l~e~i~~~l~~~~~~~--~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~-~~~Ges 752 (958)
++.|.+.+++.+...+..+........ ..-..+.+++|+||||||||++|+++|..++.+++.++++++.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 467788877777655533221111100 01134678999999999999999999999999999999988876 677754
Q ss_pred -hhhHHHHHHHH-----HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC-------CCCcEEEEEe
Q 002159 753 -EKNVRDIFQKA-----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-------SSQDLFIIGA 819 (958)
Q Consensus 753 -e~~vr~lf~~A-----~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~-------~~~~v~VI~a 819 (958)
+..++.++..+ +...++||||||+|.+.+.....+ .......+.+.|+..|++... ...++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 34567766533 112368999999999987654322 112223457888888886420 1246778888
Q ss_pred ----cCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHH----HHh-------hccC---CCCcCHHHHHhhCC---
Q 002159 820 ----SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA----LTR-------KFKL---LEDVSLYSIAKKCP--- 878 (958)
Q Consensus 820 ----TNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~----~~~-------~~~~---~~d~~l~~la~~~t--- 878 (958)
++.++.++|++++ ||+..++++. ++.+++..|++. +.+ .... -.+..+..+++.+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~-~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTA-LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCC-CCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCC-cCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 5678899999998 9998899995 888999999882 221 1111 12233566776631
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 879 ---PNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 879 ---~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
++...+++.++|+.+...+.-+.... ......|+.+|+.+|+....
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDM-----------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGC-----------TTCEEEECHHHHHHHTCSSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccc-----------cCCEEEEeeHHHHHHHHhhh
Confidence 26788999999998876655332210 11234699999999998764
No 70
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.67 E-value=7.2e-16 Score=172.43 Aligned_cols=217 Identities=19% Similarity=0.238 Sum_probs=154.3
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYI 749 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~ 749 (958)
...+|+++.|.+.+++.+...+.... ..-.+..+++|+||||||||++|+++|..++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAK-------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHH-------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHH-------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 33479999999998887766542211 1123456899999999999999999999999999999886652
Q ss_pred cchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC---------------CCCcE
Q 002159 750 GESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND---------------SSQDL 814 (958)
Q Consensus 750 Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~---------------~~~~v 814 (958)
....+..++.. ...+++|||||+|.+. ....+.|+..|+.... ...++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 22334444433 3567899999999885 2345566666654320 01248
Q ss_pred EEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 815 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 815 ~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
.+|+|||++..++++|++ ||+..+.++. |+.+++..|++...+..... .+..+..++..+ .| ..+++.++++.|
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~-~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEF-YKDSELALILQKAALKLNKTCEEKAALEIAKRS-RS-TPRIALRLLKRV 230 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TT-CHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-Cc-CHHHHHHHHHHH
Confidence 999999999999999999 9999999996 88899999999888765532 223366777763 44 567888888887
Q ss_pred HHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCC
Q 002159 894 WFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 936 (958)
Q Consensus 894 ~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 936 (958)
...|..+. ...|+.+|+..++.....
T Consensus 231 ~~~a~~~~-----------------~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 231 RDFADVND-----------------EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHTT-----------------CSEECHHHHHHHHHHHTC
T ss_pred HHHHHhhc-----------------CCccCHHHHHHHHHHhCC
Confidence 76654221 124667777777766544
No 71
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.67 E-value=8e-16 Score=176.79 Aligned_cols=356 Identities=14% Similarity=0.198 Sum_probs=168.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchhc-hHHHHHHHHHHhhcCCCeEEeecchhhhhhccc
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERK-TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g~-~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s 473 (958)
.+.+|||+|||||||||+++++|+.++.+++.+++..+.. .+.|. .+..++..|+.+... +++||++.+....
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~- 123 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA- 123 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc-
Confidence 4578999999999999999999999999999999998887 47774 789999999988753 4578877654311
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEe-cCCCCCCChhhhc--cccEEEEc
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA-ADSSEGLPPTIRR--CFSHEISM 550 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaa-Tn~~~~Ld~alrr--rf~~eIsi 550 (958)
...... .++..++. .+++......+ +++ ||+++.|++++++ ||+++|++
T Consensus 124 -------~~~~e~---rvl~~LL~----------------~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 124 -------EDVAEE---RILDALLP----------------PAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------hhhHHH---HHHHHHHH----------------Hhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEE
Confidence 011111 12222221 12222222333 455 9999999999998 89999999
Q ss_pred CCCCHH-HHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHH
Q 002159 551 GPLTEQ-QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAK 629 (958)
Q Consensus 551 g~Pde~-qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~ 629 (958)
+.|+.. .|.+|+.. +.. +++ +.++..+....
T Consensus 176 ~lP~~~~~~~ei~~~----~g~-----------~~~--------~~~~~~~~~~~------------------------- 207 (444)
T 1g41_A 176 DVSAGVSMGVEIMAP----PGM-----------EEM--------TNQLQSLFQNL------------------------- 207 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCccchhhhhcC----CCh-----------HHH--------HHHHHHHHHhh-------------------------
Confidence 999988 78887654 111 000 00000000000
Q ss_pred hhhcCcchhhhhccccHHHHHHHHHhhcccccccCCCCCCCCccccccccccccccccceeeeccccchhhhhcCCCCCC
Q 002159 630 VAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRS 709 (958)
Q Consensus 630 ~~~~~~~~~~~~~~~~~ed~~~al~~~~~~~~s~l~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~ 709 (958)
+.. + .+...++. .+.++.+.+
T Consensus 208 -----------------------~~~-~---------~~~~~~~v------~~a~~~l~~-------------------- 228 (444)
T 1g41_A 208 -----------------------GSD-K---------TKKRKMKI------KDALKALID-------------------- 228 (444)
T ss_dssp ---------------------------------------------------------CCG--------------------
T ss_pred -----------------------cCC-C---------CcceeeeH------HHHHHHHHH--------------------
Confidence 000 0 00000000 000000000
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCC
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS 789 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~ 789 (958)
+-..+.+ ..+...+...++|..+ .|+|+||+|+++.+.++ ..
T Consensus 229 ---------------------------------~e~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~ 270 (444)
T 1g41_A 229 ---------------------------------DEAAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SG 270 (444)
T ss_dssp ---------------------------------GGSCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SS
T ss_pred ---------------------------------HHHHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CC
Confidence 0000111 1234455566666444 39999999999865432 12
Q ss_pred cchH-HHHHHHHHHhhcCCCC-------CCCcEEEEEec----CCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHH-
Q 002159 790 GGVM-DRVVSQMLAEIDGLND-------SSQDLFIIGAS----NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK- 856 (958)
Q Consensus 790 ~~~~-~rv~~~LL~~ldg~~~-------~~~~v~VI~aT----Nrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~- 856 (958)
+.+. .-+...||..||+-.. ...+|++|+|. +.|..+-|.|+. ||+.+|.++. .+.++..+|+.
T Consensus 271 ~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~-lt~~e~~~Il~~ 347 (444)
T 1g41_A 271 ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA-LSAADFERILTE 347 (444)
T ss_dssp SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCC-CCHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCC-CCHHHHHHHHHH
Confidence 2333 3477899999998421 24578888887 234434488876 9999999994 89999999983
Q ss_pred ---HHHh----hccCC------CCcCHHHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccC
Q 002159 857 ---ALTR----KFKLL------EDVSLYSIAKK------CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQA 917 (958)
Q Consensus 857 ---~~~~----~~~~~------~d~~l~~la~~------~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~ 917 (958)
++++ .+... .+..+..|++. .|++.-++-|+.++..++..++.+.... ..
T Consensus 348 ~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-----------~~ 416 (444)
T 1g41_A 348 PHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-----------NG 416 (444)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-----------TT
T ss_pred HHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-----------CC
Confidence 1222 11111 12235566653 1355555688888877777666554211 12
Q ss_pred CcccccHHHHHHHHHHhCCCCCHHHHHHH
Q 002159 918 DSVVVEYDDFVKVLRELSPSLSMAELKKY 946 (958)
Q Consensus 918 ~~~~i~~~df~~al~~~~ps~s~~~l~~y 946 (958)
..+.|+.+++.+.+ .|.+..+++.+|
T Consensus 417 ~~~~i~~~~v~~~l---~~~~~~~dl~~~ 442 (444)
T 1g41_A 417 QTVNIDAAYVADAL---GEVVENEDLSRF 442 (444)
T ss_dssp CEEEECHHHHHHHH---TTTTTCHHHHHH
T ss_pred CeEEEeHHHHHHhc---CccccCCChhcc
Confidence 34678888887655 566778888887
No 72
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.62 E-value=3.9e-15 Score=165.13 Aligned_cols=233 Identities=20% Similarity=0.265 Sum_probs=152.8
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccc
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYI 749 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~ 749 (958)
...+|+++.|.+..++.+.+.+... ...-..+.+++|+||+|||||++|++++..++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAA-------KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHH-------HHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHH-------HccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3447889999888877765544211 111134578999999999999999999999999999888766521
Q ss_pred cchhhhHHHHHHHHHh--cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------C-------CCC
Q 002159 750 GESEKNVRDIFQKARS--ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------D-------SSQ 812 (958)
Q Consensus 750 Gese~~vr~lf~~A~~--~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~-------~~~ 812 (958)
. .+++..... ..+++|||||+|.+.. ...+.|+..++... . ...
T Consensus 77 ---~---~~l~~~l~~~~~~~~~l~lDEi~~l~~-------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ---P---GDLAAILANSLEEGDILFIDEIHRLSR-------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ---H---HHHHHHHTTTCCTTCEEEETTTTSCCH-------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ---h---HHHHHHHHHhccCCCEEEEECCccccc-------------chHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1 223333332 5678999999998852 23344444444221 0 012
Q ss_pred cEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 813 DLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 813 ~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
++.+|+|||+++.++++|++ ||+..+.++. |+.+++..+++.+.+..... .+..+..++..+ .|+ .+++.++++
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~-~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~-~r~l~~~l~ 212 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEY-YTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGT-MRVAKRLFR 212 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCC-CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSC-HHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCC-HHHHHHHHH
Confidence 57899999999999999998 9998999996 77888899998888755432 223467788884 554 467777777
Q ss_pred HHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHh
Q 002159 892 DAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP---SLSMAELKKYELLRDQF 953 (958)
Q Consensus 892 ~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p---s~s~~~l~~y~~~~~~~ 953 (958)
.|...|..+ ....|+.+|+..++..... +++..|.+..+.+.+.+
T Consensus 213 ~~~~~a~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~ 260 (324)
T 1hqc_A 213 RVRDFAQVA-----------------GEEVITRERALEALAALGLDELGLEKRDREILEVLILRF 260 (324)
T ss_dssp HHTTTSTTT-----------------SCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh-----------------cCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Confidence 654433211 1123666677666665532 23444444444444443
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=5.2e-15 Score=183.45 Aligned_cols=244 Identities=19% Similarity=0.278 Sum_probs=166.5
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
.|+++.|.+...+.+.+.+ ....+.+++|+||||||||++|+++|..+ +..++.++..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVL------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCCCccCCHHHHHHHHHHH------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 4667777666555443322 22356789999999999999999999987 5667777777
Q ss_pred hhh--hccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 743 ELI--NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 743 ~l~--~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
.+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.++..+ + ...+.+.|...++ .+.+.+|++|
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~---~-~~~~~~~L~~~l~-----~~~~~~I~at 322 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---G-QVDAANLIKPLLS-----SGKIRVIGST 322 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS---C-HHHHHHHHSSCSS-----SCCCEEEEEE
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc---c-hHHHHHHHHHHHh-----CCCeEEEEEe
Confidence 766 468899999999999999988899999999999987654321 1 1223333332222 3567889999
Q ss_pred CCCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-----CCcCHHHHHhhC----CCCCCHHHH
Q 002159 821 NRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-----EDVSLYSIAKKC----PPNFTGADM 886 (958)
Q Consensus 821 Nrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-----~d~~l~~la~~~----t~g~sGaDi 886 (958)
|.++ .+|++|.| ||+ .+.++. |+.+++..|++.+.+.+... .+..+..++..+ +..|....+
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~-p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITE-PSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCC-CCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 8754 57899999 998 689996 88999999999887653211 122244455442 344556688
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHhh
Q 002159 887 YALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS----PSLSMAELKKYELLRDQFE 954 (958)
Q Consensus 887 ~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~----ps~s~~~l~~y~~~~~~~~ 954 (958)
..++.+|+..+..+. . ......|+.+|+.+++.... +.+++++...+..+.+.+.
T Consensus 399 i~lld~a~~~~~~~~--~-----------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~ 457 (758)
T 1r6b_X 399 IDVIDEAGARARLMP--V-----------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_dssp HHHHHHHHHHHHHSS--S-----------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccc--c-----------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHH
Confidence 888888765432210 0 01123589999999998864 2556677777776666553
No 74
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=3e-15 Score=170.30 Aligned_cols=242 Identities=20% Similarity=0.255 Sum_probs=148.2
Q ss_pred ccccccccccccceeeeccccchhh------------------hhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCcee
Q 002159 676 DVGGLEDVKKSILDTVQLPLLHKDL------------------FSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL 737 (958)
Q Consensus 676 di~Gl~~vk~~l~e~i~~~l~~~~~------------------~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i 737 (958)
.+.|++.+|+.+...+...+..... ......+..+++|+||||||||++|+++|..++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4778888888887665322211110 0112234678999999999999999999999999999
Q ss_pred eeccchhh-hccccch-hhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcc-hHHHHHHHHHHhhcCCC--
Q 002159 738 SVKGPELI-NMYIGES-EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLN-- 808 (958)
Q Consensus 738 ~v~~~~l~-~~~~Ges-e~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~-~~~rv~~~LL~~ldg~~-- 808 (958)
.+++..+. ..|.|+. +..+..+|..+. ...++||||||+|.+...++....... ....+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99988775 4577765 445666665432 346789999999999876543211111 11347888999888541
Q ss_pred --C--------------CCCcEEEEEecCCCC------------------------------------------CCChhh
Q 002159 809 --D--------------SSQDLFIIGASNRPD------------------------------------------LIDPAL 830 (958)
Q Consensus 809 --~--------------~~~~v~VI~aTNrp~------------------------------------------~ldpaL 830 (958)
. ...++++|+|||. + .+.|+|
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 1145677778772 2 245666
Q ss_pred cCcCCccceeeccCCCCHHHHHHHHHH----HHh----h-------ccCCCCcCHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 002159 831 LRPGRFDKLLYVGVNSDVSYRERVLKA----LTR----K-------FKLLEDVSLYSIAKKC-PPNFTGADMYALCADAW 894 (958)
Q Consensus 831 lrpgRfd~~I~v~~ppd~~~r~~Il~~----~~~----~-------~~~~~d~~l~~la~~~-t~g~sGaDi~~l~~~A~ 894 (958)
+. ||+.++.++ |.+.+....|++. +.+ . ..++ +.-+..|+..+ +.++.+++|.+++..+.
T Consensus 261 ~~--R~~~~i~~~-~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~R~L~~~le~~~ 336 (376)
T 1um8_A 261 IG--RLPVLSTLD-SISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE-EEAIKEIAQLALERKTGARGLRAIIEDFC 336 (376)
T ss_dssp HT--TCCEEEECC-CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred hc--CCCceeecc-CCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC-HHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 66 888888888 4788888888752 221 1 1121 22356666652 22467889999999998
Q ss_pred HHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHH
Q 002159 895 FHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 933 (958)
Q Consensus 895 ~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~ 933 (958)
..++.+.... ....+.|+.+++.++.+.
T Consensus 337 ~~~~~~~~~~-----------~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 337 LDIMFDLPKL-----------KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHTGGGG-----------TTSEEEECHHHHTTSSCC
T ss_pred HHHHhhccCC-----------CCCEEEEeHHHhcCCCCc
Confidence 8888765321 123356888888775543
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=1.3e-14 Score=162.57 Aligned_cols=223 Identities=23% Similarity=0.279 Sum_probs=132.7
Q ss_pred CCCCCCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC-------ce-
Q 002159 665 GAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL-------NF- 736 (958)
Q Consensus 665 ~~~~~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~-------~~- 736 (958)
.....+...|+++.|.+.+++.+.... . .....+++|+||||||||++|++++..++. +|
T Consensus 14 ~~~~~~~~~f~~i~G~~~~~~~l~~~~---------~---~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~ 81 (350)
T 1g8p_A 14 GAKTRPVFPFSAIVGQEDMKLALLLTA---------V---DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVS 81 (350)
T ss_dssp ----CCCCCGGGSCSCHHHHHHHHHHH---------H---CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTC
T ss_pred CCCCCCCCCchhccChHHHHHHHHHHh---------h---CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccc
Confidence 334456678999999887665432111 1 112346999999999999999999998863 21
Q ss_pred -------------------------eeeccchhhhccccchhhhHHHHHHHH---------HhcCCcEEEEcccccccCC
Q 002159 737 -------------------------LSVKGPELINMYIGESEKNVRDIFQKA---------RSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 737 -------------------------i~v~~~~l~~~~~Gese~~vr~lf~~A---------~~~~P~ILfiDEiD~l~~~ 782 (958)
+.+........++|. ..+...|..+ ....++||||||+|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~- 158 (350)
T 1g8p_A 82 SPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED- 158 (350)
T ss_dssp CSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-
T ss_pred ccccccccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-
Confidence 111000000011111 0011122221 112467999999998852
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCC----CC------CCCcEEEEEecCCCC-CCChhhcCcCCccceeeccCCCCHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGL----ND------SSQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYR 851 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~----~~------~~~~v~VI~aTNrp~-~ldpaLlrpgRfd~~I~v~~ppd~~~r 851 (958)
...+.|+..|+.- .. ...++++|+|||..+ .++++|++ ||+..+.++.|++.+.+
T Consensus 159 ------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~ 224 (350)
T 1g8p_A 159 ------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETR 224 (350)
T ss_dssp ------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHH
T ss_pred ------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHH
Confidence 3445555555421 00 013689999999755 89999999 99998999986688888
Q ss_pred HHHHHHHHh-------------------------------hccCCCCcCHHHHHhhC-CCCC-CHHHHHHHHHHHHHHHH
Q 002159 852 ERVLKALTR-------------------------------KFKLLEDVSLYSIAKKC-PPNF-TGADMYALCADAWFHAA 898 (958)
Q Consensus 852 ~~Il~~~~~-------------------------------~~~~~~d~~l~~la~~~-t~g~-sGaDi~~l~~~A~~~A~ 898 (958)
..|++...+ ...++ +.-+..++..+ ..+. +.+.+.++++.|...|.
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~ 303 (350)
T 1g8p_A 225 VEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAA 303 (350)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 888866321 11222 22234444442 0122 56888888888877775
Q ss_pred HHHhcccCCCCCccccccCCcccccHHHHHHHHHHh
Q 002159 899 KRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 934 (958)
Q Consensus 899 ~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 934 (958)
.+. ...|+.+|+.+|+..+
T Consensus 304 ~~~-----------------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 304 LEG-----------------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp HTT-----------------CSBCCHHHHHHHHHHH
T ss_pred HcC-----------------CCcCCHHHHHHHHHHH
Confidence 331 1248899999988864
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.56 E-value=3.7e-14 Score=191.69 Aligned_cols=344 Identities=16% Similarity=0.243 Sum_probs=183.3
Q ss_pred CceEEEEcCCCChHHHHHHH-HHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh---------------cCCCeEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRY-VARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ---------------SYSPTIL 460 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLara-IA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~---------------~~~P~IL 460 (958)
+.+|||+||||||||++++. +++..+..+..++++... +...+...++... ...++|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 35699999999999999955 444446778888887533 2334444444321 1234799
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----CC
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EG 535 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~~ 535 (958)
||||++.... +..+ .....++|+++++ .+||..........-.++.+|||||.+ ..
T Consensus 1341 FiDEinmp~~---------d~yg-~q~~lelLRq~le---------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1341 FCDEINLPKL---------DKYG-SQNVVLFLRQLME---------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEETTTCSCC---------CSSS-CCHHHHHHHHHHH---------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred Eecccccccc---------cccC-chhHHHHHHHHHh---------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 9999986332 1111 1235566777754 233322221222223578999999998 47
Q ss_pred CChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc---------HHHHHHHhhh------cC-CCChhhHHH
Q 002159 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS---------EEFVKDIIGQ------TS-GFMPRDLHA 599 (958)
Q Consensus 536 Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~---------~~~L~~la~~------t~-Gfv~~DL~~ 599 (958)
++++++||| ..+.++.|+.+++..|++.+++..-....++.. ......+... .| -|..+|+..
T Consensus 1402 l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsr 1480 (2695)
T 4akg_A 1402 MSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTR 1480 (2695)
T ss_dssp CCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHH
T ss_pred CChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHH
Confidence 999999999 889999999999999999887542111111110 1111122111 11 288999998
Q ss_pred HHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHH---HHHHHHhhccc-cccc-CCC-C------
Q 002159 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKED---LVKAMERSKKR-NASA-LGA-P------ 667 (958)
Q Consensus 600 Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed---~~~al~~~~~~-~~s~-l~~-~------ 667 (958)
+++...... ... .......+..-..++... .-....+..+| |.+.+...-.. .... ... .
T Consensus 1481 v~qGll~~~-~~~------~~~~~~~l~rLw~HE~~R-vf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f 1552 (2695)
T 4akg_A 1481 LVRGVYTAI-NTG------PRQTLRSLIRLWAYEAWR-IFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLF 1552 (2695)
T ss_dssp HHHHHHHHH-HTS------SCCCHHHHHHHHHHHHHH-HHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCE
T ss_pred HHHHHHhcC-chh------hhccHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCcee
Confidence 886433211 100 000011111111110000 00011122222 22222221111 1000 000 0
Q ss_pred -CCCCccccccccccccccccceeee----------c-----cccchhhhhc-CCCCCCcEEEecCCCChhHHHHHHHHH
Q 002159 668 -KVPNVKWEDVGGLEDVKKSILDTVQ----------L-----PLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 730 (958)
Q Consensus 668 -~~p~v~~~di~Gl~~vk~~l~e~i~----------~-----~l~~~~~~~~-~i~~~~~iLL~GppGtGKTtLakaiA~ 730 (958)
......++++.. +.+++.+.+.+. + .+.|--.+.+ -..++.++||+|..||||++|+|..|.
T Consensus 1553 ~df~~~~Y~~v~~-~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~ 1631 (2695)
T 4akg_A 1553 SGLLSLDFKEVNK-TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAW 1631 (2695)
T ss_dssp ESSSSSSCEECCH-HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHH
T ss_pred eecCCCcceecCH-HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 000112333321 222222222111 0 1112222222 224567899999999999999999999
Q ss_pred HcCCceeeeccchhhhccccchhhhHHHHHHHHH-hcCCcEEEEcccc
Q 002159 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR-SARPCVIFFDELD 777 (958)
Q Consensus 731 ~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~-~~~P~ILfiDEiD 777 (958)
.++..++.+..+.-++ ..+-...++.++.+|- +..|.+++|+|-+
T Consensus 1632 i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1632 LNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred HhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 9999999987543322 1234577899999985 5677888888764
No 77
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.56 E-value=4.1e-15 Score=163.97 Aligned_cols=210 Identities=19% Similarity=0.263 Sum_probs=139.1
Q ss_pred ccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh-----c
Q 002159 676 DVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----M 747 (958)
Q Consensus 676 di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-----~ 747 (958)
++.|.+.+++.+...+..... .....-++...++|+||||||||++|+++|+.+ +.+++.++++.+.. .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH---TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHH
Confidence 456666666666554421100 000111234579999999999999999999988 45688888766532 2
Q ss_pred cccchhh-----hHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC--------CCCcE
Q 002159 748 YIGESEK-----NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--------SSQDL 814 (958)
Q Consensus 748 ~~Gese~-----~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~--------~~~~v 814 (958)
++|.... ....+....+....+||||||+|.+. ..+.+.|+..|+.... ...++
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-------------PDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-------------HHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 2221110 01223334444556899999999885 3466777777764321 11378
Q ss_pred EEEEecCC--------------------------CCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc-----
Q 002159 815 FIIGASNR--------------------------PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK----- 863 (958)
Q Consensus 815 ~VI~aTNr--------------------------p~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~----- 863 (958)
++|+|||. ...++|+|+. ||+..+.+++ |+.+.+..|++.+++...
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p-~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP-LTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHTHHHHHHHHT
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998 4468889997 9999999984 889999999988775431
Q ss_pred ----C-CCCcCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHhccc
Q 002159 864 ----L-LEDVSLYSIAKKCPP--NFTGADMYALCADAWFHAAKRKVLSS 905 (958)
Q Consensus 864 ----~-~~d~~l~~la~~~t~--g~sGaDi~~l~~~A~~~A~~r~~~~~ 905 (958)
. -.+..+..+++.. . .+.+++|.++|+.+...++.+.+...
T Consensus 239 ~~~~~~~~~~~~~~l~~~~-~~~~gn~R~L~~~i~~~~~~~~~~~i~~~ 286 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERG-YDPVFGARPLRRVIQRELETPLAQKILAG 286 (311)
T ss_dssp TTCEEEECHHHHHHHHHHS-CBTTTBTTTHHHHHHHHTHHHHHHHHHHT
T ss_pred CCcEEEeCHHHHHHHHHhC-CCccCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 1 1122356667653 3 56789999999999999888876543
No 78
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=2.9e-14 Score=165.50 Aligned_cols=193 Identities=16% Similarity=0.267 Sum_probs=136.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
+..++||||||||||+||+++++++ +.+++.+++.++...+.+.........|.......++||||||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5789999999999999999999988 78899999888776665544433333444444437899999999999742
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC---CChhhcCcCCcc--ceeeccCCCCHHHHHHHHHH
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFD--KLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~ 857 (958)
+ .....++..++.+.. .+..+||++.+.|.. ++++|++ ||+ ..+.++. |+.+.|..|++.
T Consensus 210 ~-----------~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~-p~~e~r~~iL~~ 274 (440)
T 2z4s_A 210 T-----------GVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEP-PDEETRKSIARK 274 (440)
T ss_dssp H-----------HHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCC-CCHHHHHHHHHH
T ss_pred h-----------HHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCC-CCHHHHHHHHHH
Confidence 1 112223333322211 234556655555554 8899998 996 7889995 899999999998
Q ss_pred HHhhc--cCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 858 LTRKF--KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 858 ~~~~~--~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
..+.. .+.+++ +..||..+ +-+.+++.+++..|...|.... ..|+.+++.++++...
T Consensus 275 ~~~~~~~~i~~e~-l~~la~~~--~gn~R~l~~~L~~~~~~a~~~~------------------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 275 MLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLLVYKETTG------------------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHTCCCCTTH-HHHHHHHC--CSCHHHHHHHHHHHHHHHHHSS------------------SCCCHHHHHHHTSTTT
T ss_pred HHHHcCCCCCHHH-HHHHHHhc--CCCHHHHHHHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHh
Confidence 87643 344433 78899884 4588999999998877764210 1478888888888776
Q ss_pred C
Q 002159 936 P 936 (958)
Q Consensus 936 p 936 (958)
+
T Consensus 334 ~ 334 (440)
T 2z4s_A 334 K 334 (440)
T ss_dssp C
T ss_pred h
Confidence 4
No 79
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=7.1e-14 Score=158.11 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=146.7
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc---------CCceeeeccchhh
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELI 745 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---------~~~~i~v~~~~l~ 745 (958)
+++.|.+...+.+...+...+ .-..+..++|+||||||||+++++++..+ +..++.+++....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 567777776666544331100 11346789999999999999999999988 7788888876532
Q ss_pred hc----------------cccchhhh-HHHHHHHHHhc-CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 002159 746 NM----------------YIGESEKN-VRDIFQKARSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 746 ~~----------------~~Gese~~-vr~lf~~A~~~-~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~ 807 (958)
+. +.|.+... ...+++..... .|+||||||+|.+...+ ....++..++..++..
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhc
Confidence 21 11222222 44455544433 48899999999997432 1246777787777654
Q ss_pred CCCCCcEEEEEecCCC---CCCChhhcCcCCccc-eeeccCCCCHHHHHHHHHHHHhh----ccCCCCcCHHHHHhhCCC
Q 002159 808 NDSSQDLFIIGASNRP---DLIDPALLRPGRFDK-LLYVGVNSDVSYRERVLKALTRK----FKLLEDVSLYSIAKKCPP 879 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp---~~ldpaLlrpgRfd~-~I~v~~ppd~~~r~~Il~~~~~~----~~~~~d~~l~~la~~~t~ 879 (958)
.. ..++.+|++||++ +.+++++.+ ||.. .+.++ |++.++...|++..++. ..+. +..+..+++.+ .
T Consensus 163 ~~-~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~-~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~-~ 236 (387)
T 2v1u_A 163 GD-RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFP-PYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALA-A 236 (387)
T ss_dssp ------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBC-CCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHH-H
T ss_pred CC-CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeC-CCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHH-H
Confidence 21 3578899999998 678999998 9986 88998 48899999999988764 2232 23356677663 3
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 880 N--FTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 880 g--~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
. -....+.++|+.|+..|..+. ...|+.+|+.+|+..+.
T Consensus 237 ~~~G~~r~~~~~l~~a~~~a~~~~-----------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 237 REHGDARRALDLLRVAGEIAERRR-----------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTT-----------------CSCBCHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHh
Confidence 1 245677788888877765431 12477777777776653
No 80
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-14 Score=169.19 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=126.4
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeecc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 741 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~ 741 (958)
.+++++.|.+...+.+.+.+ ......+++|+||||||||++|+++|..+ +.+|+.+++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l------------~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVL------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHH------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCcHHHHHHHHHHH------------hccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 35677888777666554332 11345689999999999999999999996 778888887
Q ss_pred chhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC
Q 002159 742 PELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 821 (958)
Q Consensus 742 ~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN 821 (958)
. ..|.|+.+..++.+|..+....|+||||| +. ....+.|+..|+ .+.+.+|+|||
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~--------~~a~~~L~~~L~-----~g~v~vI~at~ 299 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA--------IDASNILKPSLA-----RGELQCIGATT 299 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC---------C----------------CCCTT-----SSSCEEEEECC
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cc--------hhHHHHHHHhhc-----CCCEEEEecCC
Confidence 7 78899999999999999999999999999 10 113344444443 35789999999
Q ss_pred CCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCc-----CHHHHHhhC----CCCCCHHHHH
Q 002159 822 RPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-----SLYSIAKKC----PPNFTGADMY 887 (958)
Q Consensus 822 rp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~-----~l~~la~~~----t~g~sGaDi~ 887 (958)
.++ .+|++++| ||.. |.|+. |+.+++..|++.+..++....++ .+..++... +..+......
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~~-i~v~~-p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQP-IQVDQ-PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEEE-EECCC-CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCcc-ceeCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 998 69999999 9984 99996 88999999999887764322222 244555442 2334445778
Q ss_pred HHHHHHHHHHH
Q 002159 888 ALCADAWFHAA 898 (958)
Q Consensus 888 ~l~~~A~~~A~ 898 (958)
.++.+|+..+.
T Consensus 376 ~ll~~a~~~~~ 386 (468)
T 3pxg_A 376 DLIDEAGSKVR 386 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888775553
No 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.53 E-value=6.4e-15 Score=149.01 Aligned_cols=157 Identities=24% Similarity=0.403 Sum_probs=110.8
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
.|+++.|.+...+.+.+.+ ....+.+++|+||+|||||+++++++..+ +.+++.++..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l------------~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVL------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred cccccccchHHHHHHHHHH------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 4667777766555544332 11345789999999999999999999986 6788888887
Q ss_pred hhh--hccccchhhhHHHHHHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 743 ELI--NMYIGESEKNVRDIFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 743 ~l~--~~~~Gese~~vr~lf~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.+. ..+.|..+..++.+++.+. ...++||||||+|.+.+.+..... .. ....+..++ + ..++.+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-~~-~~~~l~~~~---~-----~~~~~~i~~ 157 (195)
T 1jbk_A 88 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-MD-AGNMLKPAL---A-----RGELHCVGA 157 (195)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-CC-CHHHHHHHH---H-----TTSCCEEEE
T ss_pred HHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-HH-HHHHHHHhh---c-----cCCeEEEEe
Confidence 776 4566777778888888664 456889999999999865432111 11 123333333 2 245778889
Q ss_pred cCCCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHH
Q 002159 820 SNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVL 855 (958)
Q Consensus 820 TNrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il 855 (958)
||.++ .+|+++++ ||+ .++++. |+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~-p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAE-PSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCC-CCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCC-CCHHHHHHHh
Confidence 98886 78999999 999 689996 7888887765
No 82
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.52 E-value=3.5e-14 Score=164.82 Aligned_cols=218 Identities=21% Similarity=0.282 Sum_probs=139.5
Q ss_pred cccccccccccccc---ccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcc
Q 002159 672 VKWEDVGGLEDVKK---SILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 748 (958)
Q Consensus 672 v~~~di~Gl~~vk~---~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~ 748 (958)
.+++++.|.+.+.. .+...+ ..+ ...+++|+||||||||++|++|++.++.+|+.+++..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i----------~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~----- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAI----------EAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT----- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHH----------HHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-----
T ss_pred CCHHHhCCcHHHHhchHHHHHHH----------HcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-----
Confidence 46788888887763 232221 111 1257999999999999999999999999999987532
Q ss_pred ccchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec--CC
Q 002159 749 IGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS--NR 822 (958)
Q Consensus 749 ~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT--Nr 822 (958)
...+.++.+|..+.. ..++||||||+|.+... ..+.|+..|+. +.+++|++| |.
T Consensus 86 --~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~-----~~v~lI~att~n~ 145 (447)
T 3pvs_A 86 --SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED-----GTITFIGATTENP 145 (447)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT-----TSCEEEEEESSCG
T ss_pred --CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc-----CceEEEecCCCCc
Confidence 233456777776653 46789999999998632 23356666663 345666666 44
Q ss_pred CCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhcc-------C-CCCcCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002159 823 PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK-------L-LEDVSLYSIAKKCPPNFTGADMYALCADAW 894 (958)
Q Consensus 823 p~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~-------~-~~d~~l~~la~~~t~g~sGaDi~~l~~~A~ 894 (958)
...++++|++ ||. .+.++. ++.++...|++..++... + -.+..+..++..+ +-..+++.+++..|+
T Consensus 146 ~~~l~~aL~s--R~~-v~~l~~-l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~--~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 146 SFELNSALLS--RAR-VYLLKS-LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV--NGDARRALNTLEMMA 219 (447)
T ss_dssp GGSSCHHHHT--TEE-EEECCC-CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred ccccCHHHhC--cee-EEeeCC-cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 4589999999 987 566774 778888899988876521 1 1223366777773 335667777777665
Q ss_pred HHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHH
Q 002159 895 FHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYE 947 (958)
Q Consensus 895 ~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~ 947 (958)
..+..+ ......|+.+|+.+++....+......-.+|.
T Consensus 220 ~~a~~~---------------~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd 257 (447)
T 3pvs_A 220 DMAEVD---------------DSGKRVLKPELLTEIAGERSARFDNKGDRFYD 257 (447)
T ss_dssp HHSCBC---------------TTSCEECCHHHHHHHHTCCCCC---CCHHHHH
T ss_pred Hhcccc---------------cCCCCccCHHHHHHHHhhhhhccCCccchHHH
Confidence 543100 00123588888888887765544433333443
No 83
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.51 E-value=8.8e-14 Score=153.26 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=128.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg-------~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~ 467 (958)
+.+.+++|+||||||||++++++|+.++ .+++.+++.++.+.+.+.....+...|..+. ++++||||+|.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~ 141 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYY 141 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC---CCEEEEEChhh
Confidence 4456799999999999999999999983 3899999999999888888888888888774 68999999999
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhhc
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRR 542 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alrr 542 (958)
+...+.. .....++...|..+++ ....++++|++||... .+++++++
T Consensus 142 l~~~~~~-------~~~~~~~~~~Ll~~l~---------------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 193 (309)
T 3syl_A 142 LYRPDNE-------RDYGQEAIEILLQVME---------------------NNRDDLVVILAGYADRMENFFQSNPGFRS 193 (309)
T ss_dssp SCCCC----------CCTHHHHHHHHHHHH---------------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH
T ss_pred hccCCCc-------ccccHHHHHHHHHHHh---------------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH
Confidence 9753211 1112222222222221 0145788899987543 34689999
Q ss_pred cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhc------CC-CChhhHHHHHHHHHHHHHHh
Q 002159 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT------SG-FMPRDLHALVADAGANLIRK 611 (958)
Q Consensus 543 rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t------~G-fv~~DL~~Lv~eA~~~a~~r 611 (958)
||...+.++.|+.+++.+|++.++..... ..+ ...+..++... .. -..+++..++..+...+..+
T Consensus 194 R~~~~i~~~~~~~~~~~~il~~~l~~~~~---~~~-~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 194 RIAHHIEFPDYSDEELFEIAGHMLDDQNY---QMT-PEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp HEEEEEEECCCCHHHHHHHHHHHHHHTTC---EEC-HHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEcCCcCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875432 111 22233333321 22 23778888888877666554
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=3.2e-14 Score=176.36 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=130.6
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeecc
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 741 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~ 741 (958)
..++++.|.+...+.+.+.+ ......++||+||||||||++|+++|..+ +..++.++.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l------------~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVL------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHH------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHH------------hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 35677888877776654432 12345689999999999999999999997 778888876
Q ss_pred chhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC
Q 002159 742 PELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 821 (958)
Q Consensus 742 ~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN 821 (958)
..+|.|+.+..++.+|..+....|+||||| +. ....+.|+..|+ .+.+.+|+|||
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~~--------~~~~~~L~~~l~-----~~~v~~I~at~ 299 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA--------IDASNILKPSLA-----RGELQCIGATT 299 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC---------C----------------CCCTT-----SSSCEEEEECC
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------Cc--------hhHHHHHHHHHh-----cCCEEEEeCCC
Confidence 567899999999999999999999999999 10 113344544444 35789999999
Q ss_pred CCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcC-----HHHHHhh----CCCCCCHHHHH
Q 002159 822 RPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS-----LYSIAKK----CPPNFTGADMY 887 (958)
Q Consensus 822 rp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~-----l~~la~~----~t~g~sGaDi~ 887 (958)
..+ .+||+++| ||. .|+|+. |+.+++..||+.+.+++....+++ +..++.. .+++|.+.+..
T Consensus 300 ~~~~~~~~~~d~al~r--Rf~-~i~v~~-p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQ-PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCC-CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 998 79999999 995 599996 889999999998877654333333 3333332 25677888888
Q ss_pred HHHHHHHHHHHH
Q 002159 888 ALCADAWFHAAK 899 (958)
Q Consensus 888 ~l~~~A~~~A~~ 899 (958)
.++.+|+..+..
T Consensus 376 ~ll~~a~~~~~~ 387 (758)
T 3pxi_A 376 DLIDEAGSKVRL 387 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888765543
No 85
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=1.9e-13 Score=152.07 Aligned_cols=170 Identities=15% Similarity=0.236 Sum_probs=118.7
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 783 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r 783 (958)
.+.+++|+||||||||+||+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||+|.+..++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 45789999999999999999999998 899999999888776666544433344444332 47899999999987421
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC---CCChhhcCcCCcc--ceeeccCCCCHHHHHHHHHHH
Q 002159 784 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKAL 858 (958)
Q Consensus 784 ~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~---~ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~~ 858 (958)
. ....++..++.... .+..+|+++++.|. .++++|++ ||+ ..+.++ | +.+++..|++..
T Consensus 115 -------~----~~~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~-~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 115 -------R----TQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-L-DNKTRFKIIKEK 178 (324)
T ss_dssp -------H----HHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-C-CHHHHHHHHHHH
T ss_pred -------H----HHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeC-C-CHHHHHHHHHHH
Confidence 1 11222222222111 23467777777776 68999998 997 566776 4 899999999998
Q ss_pred HhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002159 859 TRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFH 896 (958)
Q Consensus 859 ~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~ 896 (958)
.+...+. ++..+..++.. + -..+++.+++..+...
T Consensus 179 ~~~~~~~l~~~~l~~l~~~-~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 179 LKEFNLELRKEVIDYLLEN-T--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHTTCCCCHHHHHHHHHH-C--SSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHh-C--CCHHHHHHHHHHHHHc
Confidence 8754332 22336778888 3 4678888888876655
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=2.4e-14 Score=179.51 Aligned_cols=200 Identities=23% Similarity=0.353 Sum_probs=128.3
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
+++++.|.+.....+.+.+ ......+++|+||||||||++|+++|..+ +.+++.+++.
T Consensus 168 ~ld~viGr~~~i~~l~~~l------------~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQIL------------LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHH------------HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred CCcccCCcHHHHHHHHHHH------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 4666777665554443321 11345679999999999999999999987 7889999988
Q ss_pred hhh--hccccchhhhHHHHHHHHHhc-CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 743 ELI--NMYIGESEKNVRDIFQKARSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 743 ~l~--~~~~Gese~~vr~lf~~A~~~-~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.+. ..|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+. ..+.+.|...++ ...+.+|+|
T Consensus 236 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~-----~~~~~~L~~~l~-----~~~i~~I~a 305 (854)
T 1qvr_A 236 SLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-----VDAGNMLKPALA-----RGELRLIGA 305 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH-----TTCCCEEEE
T ss_pred HhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch-----HHHHHHHHHHHh-----CCCeEEEEe
Confidence 887 578899999999999999875 7899999999999866543211 123333444443 245778999
Q ss_pred cCCCC----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-----cCHHHHHhh----CCCCCCHHHH
Q 002159 820 SNRPD----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-----VSLYSIAKK----CPPNFTGADM 886 (958)
Q Consensus 820 TNrp~----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-----~~l~~la~~----~t~g~sGaDi 886 (958)
||.++ .+|++|.| ||+. |+++. |+.+++..|++.+.+++....+ ..+..+++. .+..|.....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~-p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDE-PTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECC-CCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCC-CCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 99875 58999999 9996 89996 8899999999988765432222 223444443 2466778888
Q ss_pred HHHHHHHHHHHH
Q 002159 887 YALCADAWFHAA 898 (958)
Q Consensus 887 ~~l~~~A~~~A~ 898 (958)
..++.+|+..+.
T Consensus 382 i~lldea~a~~~ 393 (854)
T 1qvr_A 382 IDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776553
No 87
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.1e-13 Score=143.21 Aligned_cols=201 Identities=19% Similarity=0.191 Sum_probs=129.7
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchh
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPEL 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l 744 (958)
+...|+++.|.+..++.+.+.+. . ....+++|+||+|||||+++++++.++ ...++.+++.+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~----------~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVE----------R--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHH----------T--TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHh----------C--CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34567788887777766654431 1 123359999999999999999999876 344666655432
Q ss_pred hhccccchhhhHHHHHHHHH------hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 002159 745 INMYIGESEKNVRDIFQKAR------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIG 818 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A~------~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~ 818 (958)
.+ ...++..+.... ...+++|||||+|.+.+ ...+.|+..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~l~~~l~~~---~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEMY---SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-------------HHHHHHHHHHHHT---TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-------------HHHHHHHHHHHhc---CCCCeEEE
Confidence 21 122222222222 25688999999998852 2344555555543 34678888
Q ss_pred ecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002159 819 ASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHA 897 (958)
Q Consensus 819 aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A 897 (958)
+||.++.+++++.+ ||. .+.++. ++.++...+++...+..... .+..+..+++.+ .| ....+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKP-VPKEAMKKRLLEICEKEGVKITEDGLEALIYIS-GG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHHHHTC
T ss_pred EeCChhhcCHHHHH--hCc-eeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHhcC
Confidence 99999999999999 998 888884 77888888888877654332 223356677663 32 3344444444333221
Q ss_pred HHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 898 AKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 898 ~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
..|+.+|+.+++.
T Consensus 212 ----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----------------------EVVDADTIYQITA 224 (226)
T ss_dssp ----------------------SCBCHHHHHHHHH
T ss_pred ----------------------ceecHHHHHHHhc
Confidence 1588999999876
No 88
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2e-14 Score=158.80 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=125.8
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccchhhhc----------cc------cchhhhHHHH
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINM----------YI------GESEKNVRDI 759 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~~l~~~----------~~------Gese~~vr~l 759 (958)
..+.+++|+||||||||+++++++.++ ...++.++|..+.+. +. |+....++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 457889999999999999999999998 346788887654332 22 3345667888
Q ss_pred HHHH--HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCC----ChhhcCc
Q 002159 760 FQKA--RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI----DPALLRP 833 (958)
Q Consensus 760 f~~A--~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~l----dpaLlrp 833 (958)
|... ....++|+||||+|.+. . ..++..|+..... ...++.||+++|..+.. ++++++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~~---~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWISS---KNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHHC---SSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhcccc---cCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8875 45678999999999997 1 2456666654431 24579999999998864 445555
Q ss_pred CCcc-ceeeccCCCCHHHHHHHHHHHHhhccCC------------------------------------CCcCHHHHHhh
Q 002159 834 GRFD-KLLYVGVNSDVSYRERVLKALTRKFKLL------------------------------------EDVSLYSIAKK 876 (958)
Q Consensus 834 gRfd-~~I~v~~ppd~~~r~~Il~~~~~~~~~~------------------------------------~d~~l~~la~~ 876 (958)
||. ..|.|+ |++.++...|++..++...-. .+.-+..+|++
T Consensus 187 -R~~~~~i~F~-pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 187 -KAHFTEIKLN-KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp -HTTEEEEECC-CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred -cCCceEEEeC-CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 887 688998 599999999999988764211 12225556664
Q ss_pred CCCCCCHHHHH---HHHHHHHHHHHHHHhcc
Q 002159 877 CPPNFTGADMY---ALCADAWFHAAKRKVLS 904 (958)
Q Consensus 877 ~t~g~sGaDi~---~l~~~A~~~A~~r~~~~ 904 (958)
. ....+|++ ++|+.|+..|-++.+..
T Consensus 265 v--A~~~GD~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 265 V--ANVSGSTEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp H--HHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HhhCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22344554 78888988887776543
No 89
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.49 E-value=9e-14 Score=165.50 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=112.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc---------cchhchHHHHHHHHHHhhcCCCeEEeecchh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s---------~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid 466 (958)
.+..++|+|||||||||++|++|+.++.+++.++|..+.. .+.|...+.+.+.|..+....| ++||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 4667999999999999999999999999999999876433 3445566677778888765555 99999999
Q ss_pred hhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccE
Q 002159 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (958)
Q Consensus 467 ~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~ 546 (958)
.+...+.. .....|.++++...... +............++++|+|||.+..+++++++|| .
T Consensus 186 ~l~~~~~~------------~~~~~LL~~ld~~~~~~------~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-~ 246 (543)
T 3m6a_A 186 KMSSDFRG------------DPSSAMLEVLDPEQNSS------FSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-E 246 (543)
T ss_dssp SCC---------------------CCGGGTCTTTTTB------CCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-E
T ss_pred hhhhhhcc------------CHHHHHHHHHhhhhcce------eecccCCeeecccceEEEeccCccccCCHHHHhhc-c
Confidence 98763210 01111112221100000 00000000111267899999999999999999999 5
Q ss_pred EEEcCCCCHHHHHHHHHHhccC-----CcccCCCC-CcHHHHHHHhhhcCC-CChhhHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQP-----VSELTSDT-GSEEFVKDIIGQTSG-FMPRDLHALVAD 603 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~-----~~~l~~D~-~~~~~L~~la~~t~G-fv~~DL~~Lv~e 603 (958)
.+.++.|+.++|.+|++.++.. ...-.... -.+..+..++..+.+ ...+.+...+..
T Consensus 247 vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~ 310 (543)
T 3m6a_A 247 IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAA 310 (543)
T ss_dssp EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHH
Confidence 7999999999999999987622 11100011 114456666666554 333444444333
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.48 E-value=4e-14 Score=125.54 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHH
Q 002159 847 DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDD 926 (958)
Q Consensus 847 d~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~d 926 (958)
|.++|.+||+.+++++++..++|+..||+. |+|||||||.++|++|++.|+++. ...|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~-t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVAR-PDKISGADINSICQESGMLAVREN-----------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTS-SCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHH
Confidence 678999999999999999999999999999 599999999999999999998763 13699999
Q ss_pred HHHHHHHhCCCCCHHHHHHHH
Q 002159 927 FVKVLRELSPSLSMAELKKYE 947 (958)
Q Consensus 927 f~~al~~~~ps~s~~~l~~y~ 947 (958)
|..|+++++||++ ++++.|+
T Consensus 64 f~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 64 FEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHHCC-----------
T ss_pred HHHHHHHHccCch-HHHHhcC
Confidence 9999999999999 8888885
No 91
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=3.9e-12 Score=142.29 Aligned_cols=233 Identities=24% Similarity=0.309 Sum_probs=150.6
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccch
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 752 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Ges 752 (958)
.+++..|.+.+++.+...+... ...-.+...++|+||||+|||||++++|++++.++...+++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~-------~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------ 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAA-------KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------ 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHH-------HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------
T ss_pred cHHHccCcHHHHHHHHHHHHHH-------HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------
Confidence 5666666665555443222100 000123477999999999999999999999999888777654421
Q ss_pred hhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------C-------CCCcEEEE
Q 002159 753 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------D-------SSQDLFII 817 (958)
Q Consensus 753 e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~-------~~~~v~VI 817 (958)
...+..++.. ...++|+|+||++.+.+ .+.+.|+..++... . ....+.++
T Consensus 90 ~~~l~~~~~~--~~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 90 QGDMAAILTS--LERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred HHHHHHHHHH--ccCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1233333332 23567999999998863 11222222222110 0 01246678
Q ss_pred EecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCC-cCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002159 818 GASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFH 896 (958)
Q Consensus 818 ~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d-~~l~~la~~~t~g~sGaDi~~l~~~A~~~ 896 (958)
++||++..|++++++ ||...+.++. ++.++...|++...+.....-+ ..+..+|.++ .| +.+++.++++.+...
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~-~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDF-YTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TT-CHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CC-ChHHHHHHHHHHHHH
Confidence 899999999999999 9988889995 8899999999988765543322 2367888884 55 557888899888777
Q ss_pred HHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhhc
Q 002159 897 AAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP---SLSMAELKKYELLRDQFEG 955 (958)
Q Consensus 897 A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p---s~s~~~l~~y~~~~~~~~~ 955 (958)
|..+. ...|+.+++.+|+..+.. ..+..+...++.+.+.|.+
T Consensus 230 a~~~~-----------------~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (334)
T 1in4_A 230 LTVVK-----------------ADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRG 274 (334)
T ss_dssp HHHHT-----------------CSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTT
T ss_pred HHHcC-----------------CCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCC
Confidence 65431 124788888888887653 3344555555666666643
No 92
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1e-13 Score=164.35 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=128.1
Q ss_pred CCccccccccccccccccceeeec-cccchhhhh-cCC---CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQL-PLLHKDLFS-SGL---RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~-~l~~~~~~~-~~i---~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
.+.+|+++.|.+.+++.+.+.+.. ....+..|. .+. .+...++|+||||||||++|+++|.+++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 345789999999888887766532 111111121 121 245789999999999999999999999999999999887
Q ss_pred hhccccchh-------hhHHHHHHHH-----HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCC
Q 002159 745 INMYIGESE-------KNVRDIFQKA-----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 812 (958)
Q Consensus 745 ~~~~~Gese-------~~vr~lf~~A-----~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~ 812 (958)
.+.+..+.. ..++.+|..+ ....++||||||+|.+.... . + .++.|+..++.. ..
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~-~----~l~~L~~~l~~~---~~ 180 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----R-G----GVGQLAQFCRKT---ST 180 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----T-T----HHHHHHHHHHHC---SS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----H-H----HHHHHHHHHHhc---CC
Confidence 654432211 1134455544 23568899999999997532 1 1 234455555432 23
Q ss_pred cEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh--ccCCCCcCHHHHHhhCCCCCCHHHHHHHH
Q 002159 813 DLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK--FKLLEDVSLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 813 ~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~--~~~~~d~~l~~la~~~t~g~sGaDi~~l~ 890 (958)
.+++++++..+..+. .+. |+...+.++. |+.+++..+++....+ ..+.++ .+..|++.+ ++|++.++
T Consensus 181 ~iIli~~~~~~~~l~-~l~---~r~~~i~f~~-~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s-----~GdiR~~i 249 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFD---RVCLDIQFRR-PDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTT-----RGDIRQVI 249 (516)
T ss_dssp CEEEEESCTTSSTTG-GGT---TTSEEEECCC-CCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHT-----TTCHHHHH
T ss_pred CEEEEEcCCCCccch-hhH---hceEEEEeCC-CCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc-----CCcHHHHH
Confidence 455554444334454 343 4556889995 7888888888776643 444433 378888873 45777666
Q ss_pred HHHHH
Q 002159 891 ADAWF 895 (958)
Q Consensus 891 ~~A~~ 895 (958)
+....
T Consensus 250 ~~L~~ 254 (516)
T 1sxj_A 250 NLLST 254 (516)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 65433
No 93
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.45 E-value=5.1e-13 Score=144.80 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=115.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc-cccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhccc
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNL-MASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l-~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s 473 (958)
..+.++||+||||||||++|+++|+.++.+++.++|++. .+...+.....++..|..+....+++++|||+|.+...+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 445689999999999999999999999999999998753 3333334456788889988877899999999999975321
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCCh-hhhccccEEEEcCC
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP-TIRRCFSHEISMGP 552 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~-alrrrf~~eIsig~ 552 (958)
. .......+...|..+.+.. .....++++|+|||.++.+++ .+++||...+.++.
T Consensus 142 ~------~~~~~~~~l~~L~~~~~~~------------------~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 142 I------GPRFSNLVLQALLVLLKKA------------------PPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp T------TTBCCHHHHHHHHHHTTCC------------------CSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC
T ss_pred C------ChhHHHHHHHHHHHHhcCc------------------cCCCCCEEEEEecCChhhcchhhhhcccceEEcCCC
Confidence 1 1112344555555543321 011467899999999988877 67889999998877
Q ss_pred CCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC
Q 002159 553 LTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (958)
Q Consensus 553 Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf 592 (958)
++++ .+|.+.+.... . . ....+..++..+.||
T Consensus 198 l~~r--~~i~~i~~~~~-~----~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 198 IATG--EQLLEALELLG-N----F-KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEH--HHHHHHHHHHT-C----S-CHHHHHHHHHHHTTS
T ss_pred ccHH--HHHHHHHHhcC-C----C-CHHHHHHHHHHhcCC
Confidence 6662 33444333211 1 1 244578888888886
No 94
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.45 E-value=5.1e-14 Score=142.07 Aligned_cols=148 Identities=24% Similarity=0.395 Sum_probs=104.4
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc----------CCceeeeccc
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 742 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~----------~~~~i~v~~~ 742 (958)
.|+++.|.+...+.+.+.+ .-..+.+++|+||+|||||++|++++..+ +.+++.++..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l------------~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQIL------------SRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred ccchhhcchHHHHHHHHHH------------hCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 4566667665544443322 11335689999999999999999999987 6778888877
Q ss_pred hhhh--ccccchhhhHHHHHHHHHhc-CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 743 ELIN--MYIGESEKNVRDIFQKARSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 743 ~l~~--~~~Gese~~vr~lf~~A~~~-~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.+.. .+.|..+..++.++..+... .|++|||||+|.+.+.+........ +.+.|...++ ..++.+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~-----~~~~~ii~~ 158 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLA-----RGELRCIGA 158 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHH-----TTCSCEEEE
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHh-----cCCeeEEEe
Confidence 6653 35666677788888887765 7889999999999866542111112 2333333333 245778889
Q ss_pred cCCCC-----CCChhhcCcCCccceeeccC
Q 002159 820 SNRPD-----LIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 820 TNrp~-----~ldpaLlrpgRfd~~I~v~~ 844 (958)
||.++ .+|+++++ ||+. ++++.
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~ 185 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQ 185 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCS
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCC
Confidence 99876 68999999 9995 88886
No 95
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.45 E-value=2e-13 Score=122.38 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHH
Q 002159 847 DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDD 926 (958)
Q Consensus 847 d~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~d 926 (958)
|.++|.+||+.++++.++..++|+..||+. |+|||||||.++|++|++.|+++.. ..|+++|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~-t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRL-CPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHH
Confidence 567899999999999999999999999999 5999999999999999999998831 2599999
Q ss_pred HHHHHHHhCCCCCH-HHHHHHHHH
Q 002159 927 FVKVLRELSPSLSM-AELKKYELL 949 (958)
Q Consensus 927 f~~al~~~~ps~s~-~~l~~y~~~ 949 (958)
|++|+++++|+... .....|+.|
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w 87 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQY 87 (88)
T ss_dssp HHHHHHHHTC--------------
T ss_pred HHHHHHHHhcCcccccchhHHhcc
Confidence 99999999999865 447777776
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=3.4e-13 Score=141.25 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=134.5
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc---------
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP--------- 742 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~--------- 742 (958)
..|+++.|.+...+.+.+.+. .+ ..+..++|+||+|+|||+++++++..+.........+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~----------~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLS----------LG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHH----------HT-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHH----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 356778887777666644331 11 1234799999999999999999999875432111000
Q ss_pred -------hhhhccc--cchhhhHHHHHHHHH----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q 002159 743 -------ELINMYI--GESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND 809 (958)
Q Consensus 743 -------~l~~~~~--Gese~~vr~lf~~A~----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~ 809 (958)
++..... ......++.+++.+. ...|.+|+|||+|.+. ...++.|+..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-------------~~~~~~l~~~l~~~-- 153 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEEP-- 153 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-------------HHHHHHHHHHHHSC--
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc-------------HHHHHHHHHHHhcC--
Confidence 1110000 011233555555443 2357899999999874 23566777777653
Q ss_pred CCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHH
Q 002159 810 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYA 888 (958)
Q Consensus 810 ~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~ 888 (958)
..++.+|++||+++.+++++++ |+ ..+.++. ++.++...+++...+..... .+..+..+++.+ .| ..+.+.+
T Consensus 154 -~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~-l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~~~~~~ 226 (250)
T 1njg_A 154 -PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDALS 226 (250)
T ss_dssp -CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-TT-CHHHHHH
T ss_pred -CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CC-CHHHHHH
Confidence 3578889999999999999988 76 5788884 78888899998887654322 223467888885 56 7778888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHH
Q 002159 889 LCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 931 (958)
Q Consensus 889 l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al 931 (958)
+|+.|+..+ ...|+.+|+++++
T Consensus 227 ~~~~~~~~~---------------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 227 LTDQAIASG---------------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHTTT---------------------TSSBCHHHHHHHS
T ss_pred HHHHHHhcc---------------------CceecHHHHHHHh
Confidence 887653211 0158889998875
No 97
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.43 E-value=1.6e-12 Score=146.69 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=116.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccccch-----------------------------------
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMASSE----------------------------------- 438 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~--~~~~I~~~~l~s~~~----------------------------------- 438 (958)
++.++||+||||||||++++++|+.++. .++.++|..+.....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~ 148 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVIN 148 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhh
Confidence 3568999999999999999999999985 678888765433221
Q ss_pred --------------hchHHHHHHHHHHhhc---------CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHh
Q 002159 439 --------------RKTSAALAQAFNTAQS---------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREF 495 (958)
Q Consensus 439 --------------g~~e~~l~~~f~~A~~---------~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l 495 (958)
++....++..+..+.. ..|+++||||+|.+.. +....+..+
T Consensus 149 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~----------------~~~~~L~~~ 212 (368)
T 3uk6_A 149 SRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI----------------ESFSFLNRA 212 (368)
T ss_dssp C----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH----------------HHHHHHHHH
T ss_pred cccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh----------------HHHHHHHHH
Confidence 1223344444444332 1278999999998754 122233333
Q ss_pred cCCCCCccccccCCCCchhhhhhhhcCcEEEEEec-----------CCCCCCChhhhccccEEEEcCCCCHHHHHHHHHH
Q 002159 496 TEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA-----------DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (958)
Q Consensus 496 ~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT-----------n~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ 564 (958)
.+.. ..+++++++. |.+..+++++++||.. +.+++|+.+++.+|++.
T Consensus 213 le~~---------------------~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 213 LESD---------------------MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRI 270 (368)
T ss_dssp TTCT---------------------TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHH
T ss_pred hhCc---------------------CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHH
Confidence 3211 2234444443 3477899999999866 89999999999999998
Q ss_pred hccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002159 565 LLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIR 610 (958)
Q Consensus 565 ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~ 610 (958)
.+..... ..+ ...++.++..+.+...+++..++..|...+..
T Consensus 271 ~~~~~~~---~~~-~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 271 RCEEEDV---EMS-EDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp HHHHTTC---CBC-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC---CCC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8765332 222 44577788887766788888899888776654
No 98
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=121.57 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccH
Q 002159 845 NSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEY 924 (958)
Q Consensus 845 ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~ 924 (958)
|||.++|.+||+.+++++++..++|+..||+. |+|||||||.++|++|++.|+++. ...|++
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~-T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~~ 71 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAEL-MPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 71 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHT-CSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCCH
Confidence 79999999999999999999999999999999 599999999999999999999874 136999
Q ss_pred HHHHHHHHHhCCC
Q 002159 925 DDFVKVLRELSPS 937 (958)
Q Consensus 925 ~df~~al~~~~ps 937 (958)
+||++|+++++|.
T Consensus 72 ~df~~Al~~v~p~ 84 (86)
T 2krk_A 72 EDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccC
Confidence 9999999999885
No 99
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6.1e-13 Score=150.18 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=131.7
Q ss_pred ccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc------CCceeeeccchhhh-
Q 002159 674 WEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELIN- 746 (958)
Q Consensus 674 ~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~------~~~~i~v~~~~l~~- 746 (958)
.+++.|.+...+.+.+.+.... .-..+..++|+||+|||||+|++++++.+ +..++.+++....+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 3567777776666655442111 01346689999999999999999999988 78888888654321
Q ss_pred -----c----------cccchh-hhHHHHHHHHHhcC-CcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q 002159 747 -----M----------YIGESE-KNVRDIFQKARSAR-PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND 809 (958)
Q Consensus 747 -----~----------~~Gese-~~vr~lf~~A~~~~-P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~ 809 (958)
. ..|.+. .....+++...... |+||+|||++.+..... ..++..++..++..
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV-- 159 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc--
Confidence 1 112122 22444555554443 89999999999974321 13566777777654
Q ss_pred CCCcEEEEEecCCC---CCCChhhcCcCCcc-ceeeccCCCCHHHHHHHHHHHHhhc----cCCCCcCHHHHHhhCCCC-
Q 002159 810 SSQDLFIIGASNRP---DLIDPALLRPGRFD-KLLYVGVNSDVSYRERVLKALTRKF----KLLEDVSLYSIAKKCPPN- 880 (958)
Q Consensus 810 ~~~~v~VI~aTNrp---~~ldpaLlrpgRfd-~~I~v~~ppd~~~r~~Il~~~~~~~----~~~~d~~l~~la~~~t~g- 880 (958)
...++.+|++||.+ +.+++.+.+ ||. +.+.++. ++.++...|++...+.. .+. +..+..+++.+ ..
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~-l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~ 234 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPP-YNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALA-ARE 234 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECC-CCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHH-HHT
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCC-CCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHH-HHh
Confidence 23578899999987 467888888 786 4899984 88898999998876532 221 22245566553 31
Q ss_pred -CCHHHHHHHHHHHHHHHHH
Q 002159 881 -FTGADMYALCADAWFHAAK 899 (958)
Q Consensus 881 -~sGaDi~~l~~~A~~~A~~ 899 (958)
-....+.++|+.|+..|..
T Consensus 235 ~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 235 HGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 3445666788888777653
No 100
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=2e-12 Score=146.51 Aligned_cols=212 Identities=20% Similarity=0.239 Sum_probs=138.9
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-----------CCceeeeccch
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----------SLNFLSVKGPE 743 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----------~~~~i~v~~~~ 743 (958)
+++.|.+...+.+.+.+.... .-..+..++|+||||||||++|++++.++ +..++.+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 567777776666654331100 11335689999999999999999999987 88899988665
Q ss_pred hh-h----------cc-------ccch-hhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHH-HHHHHHh
Q 002159 744 LI-N----------MY-------IGES-EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRV-VSQMLAE 803 (958)
Q Consensus 744 l~-~----------~~-------~Ges-e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv-~~~LL~~ 803 (958)
.. + .. .|.+ ...+..++..+....+ ||||||+|.+...+. ..+ +..|+..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~~ 161 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLRS 161 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhcC
Confidence 43 1 11 1222 2234445554544444 999999999974321 123 5555443
Q ss_pred hcCCCCCCCcEEEEEecCCC---CCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh----ccCCCCcCHHHHHhh
Q 002159 804 IDGLNDSSQDLFIIGASNRP---DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK----FKLLEDVSLYSIAKK 876 (958)
Q Consensus 804 ldg~~~~~~~v~VI~aTNrp---~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~----~~~~~d~~l~~la~~ 876 (958)
. .++.+|+|||.+ +.+++++++ ||...+.++. ++.++...|++..++. ..+ .+..+..+++.
T Consensus 162 ~-------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~-l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~ 230 (384)
T 2qby_B 162 D-------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKP-YDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAI 230 (384)
T ss_dssp S-------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECC-CCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHH
T ss_pred C-------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECC-CCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHH
Confidence 2 578899999988 678999988 9988999994 8899999999988763 222 23346677777
Q ss_pred CCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhC
Q 002159 877 CPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 935 (958)
Q Consensus 877 ~t~g~sG--aDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 935 (958)
+ .+++| ..+.++|+.|+..|. ....|+.+|+.+|+.++.
T Consensus 231 ~-~~~~G~~r~a~~~l~~a~~~a~-------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 S-AKEHGDARKAVNLLFRAAQLAS-------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp H-HTTCCCHHHHHHHHHHHHHHTT-------------------SSSCCCHHHHHHHHHHHH
T ss_pred H-HhccCCHHHHHHHHHHHHHHhc-------------------CCCccCHHHHHHHHHHHh
Confidence 4 33332 455677777765543 012467777777776654
No 101
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.42 E-value=1.1e-12 Score=137.97 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=121.7
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcC---CceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 783 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~---~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r 783 (958)
.+.+++|+||||||||++|++++.++. .+++.++..++...+.. .+ +. ...+.+|||||+|.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~--~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA----LL----EG--LEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG----GG----TT--GGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH----HH----Hh--ccCCCEEEEeccccccCCH
Confidence 467899999999999999999998874 67788877766543321 11 11 1457899999999986321
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCCCCCCCcE-EEEEecCCCC---CCChhhcCcCCcc--ceeeccCCCCHHHHHHHHHH
Q 002159 784 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDL-FIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 784 ~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v-~VI~aTNrp~---~ldpaLlrpgRfd--~~I~v~~ppd~~~r~~Il~~ 857 (958)
.....|+..++.... .+.+ +|+++++.++ .+++++.+ ||. ..+.++. |+.+++..|++.
T Consensus 121 -----------~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~-~~~~~~~~~l~~ 185 (242)
T 3bos_A 121 -----------LWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQP-MMDDEKLAALQR 185 (242)
T ss_dssp -----------HHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCC-CCGGGHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCC-CCHHHHHHHHHH
Confidence 112223333322211 1233 5555555554 45688888 886 8899995 888999999998
Q ss_pred HHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHH
Q 002159 858 LTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 932 (958)
Q Consensus 858 ~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 932 (958)
+.+..... .+..+..+++.+ . -+.+++.++++.|...|..+. ..|+.+|+.++++
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~-~-g~~r~l~~~l~~~~~~a~~~~------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 186 RAAMRGLQLPEDVGRFLLNRM-A-RDLRTLFDVLDRLDKASMVHQ------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHTTCCCCHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHHT------------------CCCCHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHhC------------------CCCcHHHHHHHhh
Confidence 88754432 223367788874 3 478899999998887775331 1488999998875
No 102
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.42 E-value=1.4e-13 Score=152.92 Aligned_cols=169 Identities=22% Similarity=0.237 Sum_probs=117.9
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhcccc
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 750 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~G 750 (958)
+.+|+++.|.+.+++.+...+. .+ ..+..++++||||||||++++++|++++.+++.+++++. +
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~----------~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~ 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS----------KG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH----------TT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C
T ss_pred CCCHHHHhCcHHHHHHHHHHHH----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C
Confidence 3468889998888776655432 11 234567888999999999999999999999999997653 1
Q ss_pred chhhhHHHHHHHHHhc-----CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCC
Q 002159 751 ESEKNVRDIFQKARSA-----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 825 (958)
Q Consensus 751 ese~~vr~lf~~A~~~-----~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ 825 (958)
...++..+...... .+.||||||+|.+.+ ....+.|+..++.. ..++.+|+|||+++.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~---~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY---SSNCSIIITANNIDG 148 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH---GGGCEEEEEESSGGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC---CCCcEEEEEeCCccc
Confidence 34455544443332 568999999998851 23445566666543 245778889999999
Q ss_pred CChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh---------ccCCCCcCHHHHHhh
Q 002159 826 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK---------FKLLEDVSLYSIAKK 876 (958)
Q Consensus 826 ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~---------~~~~~d~~l~~la~~ 876 (958)
+++++++ ||. .+.++. |+.++|..|++.+.+. ..+.+...+..+++.
T Consensus 149 l~~~l~s--R~~-~i~~~~-~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 204 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQ-PTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK 204 (324)
T ss_dssp SCTTHHH--HSE-EEECCC-CCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHH
T ss_pred cCHHHHh--hCc-EEEeCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Confidence 9999999 995 689985 7888877766554322 222221346677777
No 103
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.41 E-value=1e-12 Score=146.56 Aligned_cols=154 Identities=20% Similarity=0.256 Sum_probs=101.2
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc------hhhhcc
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELINMY 748 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~------~l~~~~ 748 (958)
+++.|.+.+++.+...+ ..+.+++|+||||||||++|+++|..++.+++.+++. ++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l--------------~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGI--------------CTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHH--------------HHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE
T ss_pred cceeCcHHHHHHHHHHH--------------HcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce
Confidence 45667776665443221 1146899999999999999999999999999888762 222221
Q ss_pred ccc-hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEe
Q 002159 749 IGE-SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGA 819 (958)
Q Consensus 749 ~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~a 819 (958)
.-. ..... .|.. .....+|+||||+|.+. ....+.|+..|+... ....+++||+|
T Consensus 93 ~~~~~~~~~--~~~~-g~l~~~vl~iDEi~~~~-------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 93 IYNQHKGNF--EVKK-GPVFSNFILADEVNRSP-------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEETTTTEE--EEEE-CTTCSSEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred eecCCCCce--Eecc-CcccccEEEEEccccCC-------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 110 00000 0000 00013799999999874 234556666555210 12346778888
Q ss_pred cCCCC-----CCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh
Q 002159 820 SNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 861 (958)
Q Consensus 820 TNrp~-----~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~ 861 (958)
+|..+ .+++++++ ||+..+.++. |+.+.+..|++.....
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~-p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTY-LDKESELEVMRRVSNM 200 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCC-CCHHHHHHHHHHHHCT
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCC-CCHHHHHHHHHhcccc
Confidence 88543 38999999 9998899996 7999999999888764
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=3.9e-12 Score=144.13 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=129.6
Q ss_pred cccccccccccccceeeeccccchhhhhcCCCCCC--cEEEecCCCChhHHHHHHHHHHc----CCceeeeccchhhh--
Q 002159 675 EDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRS--GVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELIN-- 746 (958)
Q Consensus 675 ~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~--~iLL~GppGtGKTtLakaiA~~~----~~~~i~v~~~~l~~-- 746 (958)
+++.|.+...+.+.+.+... . .+ ..+. .++|+||||||||++++++++.+ +..++.+++....+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~------~-~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNW------L-RN-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHH------H-HS-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHH------H-cC-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56777777666665443110 0 11 2234 79999999999999999999988 56778887544321
Q ss_pred ----c---c-------ccchhhh-HHHHHHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC-
Q 002159 747 ----M---Y-------IGESEKN-VRDIFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND- 809 (958)
Q Consensus 747 ----~---~-------~Gese~~-vr~lf~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~- 809 (958)
. . .|.+... ...+..... ...|.||||||+|.+. ...+..|+..++....
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHhCCCC
Confidence 1 0 1111111 222222222 2458899999999882 3456677666654321
Q ss_pred CCCcEEEEEecCCC---CCCChhhcCcCCccc-eeeccCCCCHHHHHHHHHHHHhhc---cCCCCcCHHHHHhhCCCCC-
Q 002159 810 SSQDLFIIGASNRP---DLIDPALLRPGRFDK-LLYVGVNSDVSYRERVLKALTRKF---KLLEDVSLYSIAKKCPPNF- 881 (958)
Q Consensus 810 ~~~~v~VI~aTNrp---~~ldpaLlrpgRfd~-~I~v~~ppd~~~r~~Il~~~~~~~---~~~~d~~l~~la~~~t~g~- 881 (958)
...++.+|++||.+ +.+++.+.+ ||.. .+.++ |++.++...+++...... ....+..+..+++.+ .+.
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~-pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 231 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFS-PYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT-GAQT 231 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECC-CCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH-SBSS
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeC-CCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-hhcc
Confidence 01478899999988 678888888 8876 78888 488888888988877641 112233466777773 322
Q ss_pred -------CHHHHHHHHHHHHHHHHHH
Q 002159 882 -------TGADMYALCADAWFHAAKR 900 (958)
Q Consensus 882 -------sGaDi~~l~~~A~~~A~~r 900 (958)
....+.++|+.|+..|..+
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3467888999888877543
No 105
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.38 E-value=4.9e-12 Score=128.75 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=121.8
Q ss_pred ccccccccCCCC--ceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCccccc
Q 002159 81 DISDAKFASLDD--SALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTF 158 (958)
Q Consensus 81 ~~~~~~~~~~d~--~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (958)
-+|.|.++..+| .+.+.|+.++|++||++.||.|.|+|.. ...++|....+.
T Consensus 7 i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r---~t~a~v~~~~~e----------------------- 60 (185)
T 1cz4_A 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR---KTVGRVYRARPE----------------------- 60 (185)
T ss_dssp EEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS---EEEEEEEECSST-----------------------
T ss_pred EEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC---eEEEEEEEcCcC-----------------------
Confidence 367788888888 7899999999999999999999999754 667776654333
Q ss_pred CCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceeEEEEEecCCCCC
Q 002159 159 PSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPK 238 (958)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 238 (958)
.+..+++.|+..++.|+|+..|+ .|+|+|. ++ +
T Consensus 61 -----------d~~~g~Irid~~~R~N~gv~iGD----------------------------------~V~V~~~-~~-~ 93 (185)
T 1cz4_A 61 -----------DENKGIVRIDSVMRNNCGASIGD----------------------------------KVKVRKV-RT-E 93 (185)
T ss_dssp -----------TTTTSEEECCHHHHHHHTCCTTC----------------------------------EEEEEEE-CC-C
T ss_pred -----------cCCCCEEEeCHHHHhccCCCCCC----------------------------------EEEEEEC-CC-C
Confidence 35678999999999999999985 6788884 44 7
Q ss_pred cceeeEEEeeecCCC---CccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccC
Q 002159 239 YASHLRVSFVKIPEC---GTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLH 315 (958)
Q Consensus 239 ~~~~~rv~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~ 315 (958)
+|+++++ .|.. ++++ +.++ +..+|++||.. |||.+||+|.+....
T Consensus 94 ~A~~V~l----~P~~~~~~~~~-~~~~-----------~~~~l~~~l~~-rpv~~Gd~v~v~~~~--------------- 141 (185)
T 1cz4_A 94 IAKKVTL----APIIRKDQRLK-FGEG-----------IEEYVQRALIR-RPMLEQDNISVPGLT--------------- 141 (185)
T ss_dssp BCSEEEE----EEECSTTCCSC-CCSS-----------HHHHHHHHHTT-CEECTTCEECCSSCC---------------
T ss_pred CccEEEE----ecccccccccc-cccc-----------hHHHHHHHHCC-CcccCCCEEEEeeec---------------
Confidence 9997555 4664 4443 3333 37899999976 899999999876310
Q ss_pred CCCCc-eEEEEEEEEecCCCeEEEEcCCceEEEEcC
Q 002159 316 RRSDN-IIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (958)
Q Consensus 316 ~~~~~-~~~f~v~~~~~~~~~~~~vd~~~T~l~~~~ 350 (958)
...+ .+.|+|++++|++. .++|. ..|.+.+.+
T Consensus 142 -~~g~~~~~f~Vv~t~P~~~-~v~Vt-~~T~I~i~~ 174 (185)
T 1cz4_A 142 -LAGQTGLLFKVVKTLPSKV-PVEIG-EETKIEIRE 174 (185)
T ss_dssp -CSSCCCCEEEEEEESSSSS-CEECC-TTCEEEECS
T ss_pred -cCCCeEEEEEEEEEcCCCc-eEEEc-CCeEEEECC
Confidence 0135 79999999999752 33444 667777755
No 106
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.7e-12 Score=142.57 Aligned_cols=188 Identities=20% Similarity=0.157 Sum_probs=120.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC------Cceeeeccch
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS------LNFLSVKGPE 743 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~------~~~i~v~~~~ 743 (958)
.+..|+++.|.+.+++.+...+. .+ ...+++|+||||||||++|+++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~----------~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK----------SA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT----------CT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh----------cC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34568889998888776654431 11 123499999999999999999999864 3566676654
Q ss_pred hhhccccchhhhHHHHHHHHH----------------hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 002159 744 LINMYIGESEKNVRDIFQKAR----------------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL 807 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~----------------~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~ 807 (958)
... ...+++.+.... ...+.||||||+|.+.+ ...+.|+..|+..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-------------~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-------------DAQSALRRTMETY 160 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-------------HHHHHHHHHHHhc
Confidence 311 112222221111 12456999999998852 2345666666654
Q ss_pred CCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC-CCCcCHHHHHhhCCCCCCHHHH
Q 002159 808 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADM 886 (958)
Q Consensus 808 ~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~-~~d~~l~~la~~~t~g~sGaDi 886 (958)
..+..+|++||.++.+++++++ |+. .+.++. ++.++...+++...+...+ -.+..+..+++.+ .|. .+.+
T Consensus 161 ---~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G~-~r~~ 231 (353)
T 1sxj_D 161 ---SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKA-LDASNAIDRLRFISEQENVKCDDGVLERILDIS-AGD-LRRG 231 (353)
T ss_dssp ---TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCC-CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT-SSC-HHHH
T ss_pred ---CCCceEEEEeCchhhCcchhhc--cCc-eEEeCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCC-HHHH
Confidence 2356667788999999999998 987 778874 7777888888877654332 1233467788874 443 3444
Q ss_pred HHHHHHHHHHH
Q 002159 887 YALCADAWFHA 897 (958)
Q Consensus 887 ~~l~~~A~~~A 897 (958)
.++++.++..+
T Consensus 232 ~~~l~~~~~~~ 242 (353)
T 1sxj_D 232 ITLLQSASKGA 242 (353)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555554443
No 107
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.36 E-value=9.4e-12 Score=138.92 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
+..+.+...+.....+ .....+|||+||||||||++++++|+.++..++.++|..+. ....+...+..
T Consensus 36 ~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 103 (338)
T 3pfi_A 36 SIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN-- 103 (338)
T ss_dssp HHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--
Confidence 3445555554433211 12345699999999999999999999999999999997643 23334444443
Q ss_pred cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC
Q 002159 454 SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS 533 (958)
Q Consensus 454 ~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~ 533 (958)
...++++||||++.+... ....+...++...-.. ..+.............++++|++||..
T Consensus 104 ~~~~~vl~lDEi~~l~~~------------~~~~Ll~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~atn~~ 164 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPA------------IEEVLYPAMEDYRLDI-------IIGSGPAAQTIKIDLPKFTLIGATTRA 164 (338)
T ss_dssp CCTTCEEEEETGGGCCHH------------HHHHHHHHHHTSCC----------------CCCCCCCCCCCEEEEEESCG
T ss_pred ccCCCEEEEechhhcCHH------------HHHHHHHHHHhccchh-------hcccCccccceecCCCCeEEEEeCCCc
Confidence 246799999999987541 1122222222110000 000000000000112258999999999
Q ss_pred CCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 002159 534 EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (958)
Q Consensus 534 ~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~ 605 (958)
..+++++++||...+.++.|+.+++..+++..+..... .. ....++.++..+.|. .+.+..+++.+.
T Consensus 165 ~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~-~~~~~~~l~~~~~G~-~r~l~~~l~~~~ 231 (338)
T 3pfi_A 165 GMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TC-EEKAALEIAKRSRST-PRIALRLLKRVR 231 (338)
T ss_dssp GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EE-CHHHHHHHHHTTTTC-HHHHHHHHHHHH
T ss_pred cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 99999999999999999999999999999988765432 11 244567777766664 355555555544
No 108
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=1.4e-12 Score=152.80 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=106.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCC--ceeeecc-----chhhhccccchhhhHHHHHHHHHhc---CCcEEEEcccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKG-----PELINMYIGESEKNVRDIFQKARSA---RPCVIFFDELD 777 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~-----~~l~~~~~Gese~~vr~lf~~A~~~---~P~ILfiDEiD 777 (958)
+.+++|+||||||||+||+++|..++. +|..+.+ +++.+.+.+..... ...|..+... .++|||||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 568999999999999999999998854 3333322 34444333322111 1223222222 47899999997
Q ss_pred cccCCCCCCCCCcchHHHHHHHHHHhhcCC-------CCCCCcEEEEEecCCCCC---CChhhcCcCCccceeeccCCCC
Q 002159 778 SLAPARGASGDSGGVMDRVVSQMLAEIDGL-------NDSSQDLFIIGASNRPDL---IDPALLRPGRFDKLLYVGVNSD 847 (958)
Q Consensus 778 ~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~-------~~~~~~v~VI~aTNrp~~---ldpaLlrpgRfd~~I~v~~ppd 847 (958)
.+. ..+.+.|+..|+.- .......++|+|||.+.. ..+++++ ||...++++.|.+
T Consensus 120 r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~ 184 (500)
T 3nbx_X 120 KAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQD 184 (500)
T ss_dssp GCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCC
T ss_pred hhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhh
Confidence 653 35677788877521 111122356778886432 4469999 9999999997555
Q ss_pred HHHHHHHHHHHHh-------------------------hccCCCCcCHHHHHhhC--------CCCCCHHHHHHHHHHHH
Q 002159 848 VSYRERVLKALTR-------------------------KFKLLEDVSLYSIAKKC--------PPNFTGADMYALCADAW 894 (958)
Q Consensus 848 ~~~r~~Il~~~~~-------------------------~~~~~~d~~l~~la~~~--------t~g~sGaDi~~l~~~A~ 894 (958)
.+++..|++.... +..+++++ ++.++... ..|.|.+.+.++++.|.
T Consensus 185 ~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~ 263 (500)
T 3nbx_X 185 KANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQ 263 (500)
T ss_dssp HHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHH
Confidence 5788888875432 12222211 23333221 25788999988988877
Q ss_pred HHHHHH
Q 002159 895 FHAAKR 900 (958)
Q Consensus 895 ~~A~~r 900 (958)
..|.-+
T Consensus 264 A~A~l~ 269 (500)
T 3nbx_X 264 ASAFFS 269 (500)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 777644
No 109
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.35 E-value=3e-12 Score=140.57 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchhc-hHHHHHHHHHHhh-----cCCCeEEeecchhhh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERK-TSAALAQAFNTAQ-----SYSPTILLLRDFDVF 468 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g~-~e~~l~~~f~~A~-----~~~P~IL~iDeid~L 468 (958)
.+.+++|+||||||||++++++|+.++.+++.++|.++.. .+.+. ....++..+..+. ...++++||||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4568999999999999999999999999999999988765 33332 2345666555331 123689999999998
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEe----cCCCCCCChhhhccc
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA----ADSSEGLPPTIRRCF 544 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaa----Tn~~~~Ld~alrrrf 544 (958)
.......+ .+ .....+...|..+++... .....+.....++++|++ ++.+..+++++++||
T Consensus 129 ~~~~~~~~--~~--~~~~~~~~~Ll~~le~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~ 193 (310)
T 1ofh_A 129 CKKGEYSG--AD--VSREGVQRDLLPLVEGST-----------VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 193 (310)
T ss_dssp SCCSSCCS--SH--HHHHHHHHHHHHHHHCCE-----------EEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC
T ss_pred Cccccccc--cc--hhHHHHHHHHHHHhcCCe-----------EecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC
Confidence 76321100 00 011112222222222100 000001112457888888 457788999999999
Q ss_pred cEEEEcCCCCHHHHHHHHHH
Q 002159 545 SHEISMGPLTEQQRVEMLSQ 564 (958)
Q Consensus 545 ~~eIsig~Pde~qR~~Il~~ 564 (958)
...+.++.|+.+++.+|++.
T Consensus 194 ~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 194 PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEECCCCCHHHHHHHHHS
T ss_pred CceEEcCCcCHHHHHHHHHh
Confidence 98899999999999999984
No 110
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.34 E-value=8.1e-13 Score=133.42 Aligned_cols=134 Identities=18% Similarity=0.305 Sum_probs=96.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--ccchhchHHHHHHHHHHhh-cCCCeEEeec
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQ-SYSPTILLLR 463 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~--s~~~g~~e~~l~~~f~~A~-~~~P~IL~iD 463 (958)
+.+++|+||+|||||+++++++..+ +.+++.+++..+. ..+.+.....+...++... ...+.+++||
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 4569999999999999999999997 7888999987765 2344556667777777553 3468899999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCCh
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPP 538 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~ 538 (958)
|+|.+....... ... .+...+..+.+ ..++.+|++||.+. .+++
T Consensus 123 e~~~l~~~~~~~----~~~----~~~~~l~~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~ 171 (195)
T 1jbk_A 123 ELHTMVGAGKAD----GAM----DAGNMLKPALA-----------------------RGELHCVGATTLDEYRQYIEKDA 171 (195)
T ss_dssp TGGGGTT----------CC----CCHHHHHHHHH-----------------------TTSCCEEEEECHHHHHHHTTTCH
T ss_pred CHHHHhccCccc----chH----HHHHHHHHhhc-----------------------cCCeEEEEeCCHHHHHHHHhcCH
Confidence 999987532110 011 11222323221 45677888888775 7899
Q ss_pred hhhccccEEEEcCCCCHHHHHHHH
Q 002159 539 TIRRCFSHEISMGPLTEQQRVEML 562 (958)
Q Consensus 539 alrrrf~~eIsig~Pde~qR~~Il 562 (958)
++++||. .+.++.|+.++|.+|+
T Consensus 172 ~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 172 ALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHhc-eeecCCCCHHHHHHHh
Confidence 9999987 6999999999998875
No 111
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=112.52 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccH
Q 002159 845 NSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEY 924 (958)
Q Consensus 845 ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~ 924 (958)
+|+.++|.+||+.+++++++..++|+..||+. |+|||||||.++|++|++.|+++. ...|++
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~-t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAEL-MPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 38999999999999999999999999999999 599999999999999999999873 236999
Q ss_pred HHHHHHHHHhCC
Q 002159 925 DDFVKVLRELSP 936 (958)
Q Consensus 925 ~df~~al~~~~p 936 (958)
+||++|++++..
T Consensus 64 ~d~~~Al~~v~~ 75 (78)
T 3kw6_A 64 EDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 112
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=6e-13 Score=159.87 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceeee----ccchhhhcc-----ccchhhhHHHHHHHHHhcCCcEEEEccc
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV----KGPELINMY-----IGESEKNVRDIFQKARSARPCVIFFDEL 776 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v----~~~~l~~~~-----~Gese~~vr~lf~~A~~~~P~ILfiDEi 776 (958)
+...++||+||||||||+||+++|..++..++.. .+..+.... .|+.... ...+..| ..+|+||||+
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A---~~gil~IDEi 400 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA---DGGIAVIDEI 400 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH---SSSEECCTTT
T ss_pred CCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec---CCCcEEeehh
Confidence 3345899999999999999999999987665442 222222211 1111111 1123333 3469999999
Q ss_pred ccccCCCCCCCCCcchHHHHHHHHHHhhcCCC----------CCCCcEEEEEecCCCC-------------CCChhhcCc
Q 002159 777 DSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-------------LIDPALLRP 833 (958)
Q Consensus 777 D~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~----------~~~~~v~VI~aTNrp~-------------~ldpaLlrp 833 (958)
|.+.+ ...+.|+..|+.-. ....++.||+|||.++ .|+++|++
T Consensus 401 d~l~~-------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~- 466 (595)
T 3f9v_A 401 DKMRD-------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS- 466 (595)
T ss_dssp TCCCS-------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG-
T ss_pred hhCCH-------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh-
Confidence 98852 34566777776321 0124678999999987 89999999
Q ss_pred CCccceeeccCCCCHHHHHHHHHHHHhh
Q 002159 834 GRFDKLLYVGVNSDVSYRERVLKALTRK 861 (958)
Q Consensus 834 gRfd~~I~v~~ppd~~~r~~Il~~~~~~ 861 (958)
|||..+.+...|+.+ ...|.+..++.
T Consensus 467 -RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 -RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp -GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred -hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 999655554447777 77787777654
No 113
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.33 E-value=4.1e-12 Score=148.61 Aligned_cols=164 Identities=14% Similarity=0.275 Sum_probs=111.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~ 467 (958)
.++||+||||||||++++++|..+ +..++.+++. +.+.|+.+..++.+|..+....+.|+|||
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---- 274 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---- 274 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----
Confidence 468999999999999999999997 7788888887 55667777788999999988889999999
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhhc
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRR 542 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alrr 542 (958)
.. . .....|...+ ..+.+.+|++||..+ .+++++++
T Consensus 275 -~~----~-----------~a~~~L~~~L-----------------------~~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 275 -AA----I-----------DASNILKPSL-----------------------ARGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -C-----------------------CCCT-----------------------TSSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -Cc----h-----------hHHHHHHHhh-----------------------cCCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 11 0 0111111111 156789999999887 68999999
Q ss_pred cccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC-----ChhhHHHHHHHHHHHH
Q 002159 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF-----MPRDLHALVADAGANL 608 (958)
Q Consensus 543 rf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf-----v~~DL~~Lv~eA~~~a 608 (958)
||. .+.++.|+.+++.+|++.+.......+.-.-.+..+..++..+.+| .+.+...++.+|+..+
T Consensus 316 Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 316 RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 996 5999999999999999998866432221112244455555555544 4557777777766544
No 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.32 E-value=8.3e-12 Score=137.46 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=117.4
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccch
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPE 743 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~ 743 (958)
..+..|+++.|.+.+++.+...+. .+ ...+++|+||+|||||++|++++..+ +.+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVE----------RK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTT----------TT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHh----------CC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 344578889998888877655431 11 12349999999999999999999986 34567777655
Q ss_pred hhhccccchhhhHHHHHHHHH------hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEE
Q 002159 744 LINMYIGESEKNVRDIFQKAR------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFII 817 (958)
Q Consensus 744 l~~~~~Gese~~vr~lf~~A~------~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI 817 (958)
..+ ...++..+.... ...+.|++|||+|.+. ....+.|+..++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~L~~~le~~---~~~~~~i 136 (319)
T 2chq_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMY---SKSCRFI 136 (319)
T ss_dssp TTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-------------HHHHHTTGGGTSSS---SSSEEEE
T ss_pred ccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-------------HHHHHHHHHHHHhc---CCCCeEE
Confidence 321 122233333222 2457899999999885 23456677777653 3578888
Q ss_pred EecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhh
Q 002159 818 GASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 876 (958)
Q Consensus 818 ~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~ 876 (958)
++||.++.+++++.+ |+. .+.++. ++.++...+++...++.... .+..+..++..
T Consensus 137 ~~~~~~~~l~~~l~s--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~ 192 (319)
T 2chq_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKP-VPKEAMKKRLLEICEKEGVKITEDGLEALIYI 192 (319)
T ss_dssp EEESCGGGSCHHHHT--TCE-EEECCC-CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT
T ss_pred EEeCChhhcchHHHh--hCe-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999 886 788885 77888888888887754432 22235666765
No 115
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.32 E-value=6.3e-13 Score=117.50 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHH
Q 002159 849 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 928 (958)
Q Consensus 849 ~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~ 928 (958)
++|.+||+.+++++++..++|+..||+. |+|||||||.++|++|++.|+++. ...|+++||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~-t~G~SGADi~~l~~eAa~~ai~~~-----------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIR-NDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTS-SCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHH
Confidence 4689999999999999899999999999 599999999999999999999873 1369999999
Q ss_pred HHHHHh-CCCCCHHHHHHHH
Q 002159 929 KVLREL-SPSLSMAELKKYE 947 (958)
Q Consensus 929 ~al~~~-~ps~s~~~l~~y~ 947 (958)
.|++++ .|+.++++++.|.
T Consensus 63 ~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp HHHHTTCC------------
T ss_pred HHHHHHHcCcCChHHHHhhC
Confidence 999998 6889999999884
No 116
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.29 E-value=6.4e-11 Score=154.15 Aligned_cols=117 Identities=24% Similarity=0.300 Sum_probs=82.4
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccc----------------hhhhccccchhhhHHHHHHHHH
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP----------------ELINMYIGESEKNVRDIFQKAR 764 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~----------------~l~~~~~Gese~~vr~lf~~A~ 764 (958)
|+++++-|.+|||+|+||||||-.++.+. |.....++.. +++-.+....|+.+.-+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 67778889999999999999988776433 4444444432 2222345556888888899999
Q ss_pred hcCCcEEEEcccccccCCCCCC---C-CCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC
Q 002159 765 SARPCVIFFDELDSLAPARGAS---G-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 821 (958)
Q Consensus 765 ~~~P~ILfiDEiD~l~~~r~~~---~-~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN 821 (958)
..+|++|++|.+.+|.++..-. + ..-|...|+++|-|..|.+.-. ..++.+|.+..
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~-~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLIFINQ 1566 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH-HHTCEEEEEEC
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH-hCCcEEEEeec
Confidence 9999999999999999875432 1 2234567889888888877543 34556665543
No 117
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.29 E-value=4.5e-11 Score=156.97 Aligned_cols=119 Identities=28% Similarity=0.396 Sum_probs=85.0
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcCC---c--eeeeccc--hhhhcccc------------chhhhHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---N--FLSVKGP--ELINMYIG------------ESEKNVRDIFQKA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~---~--~i~v~~~--~l~~~~~G------------ese~~vr~lf~~A 763 (958)
.|+.++++++|+||||||||+||.+++.+... . |+..... .+.....| ..|+.++.+++.+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 36889999999999999999999999887633 3 5554431 11122223 4567788888899
Q ss_pred HhcCCcEEEEcccccccCCC---CCCCCCc-chHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 764 RSARPCVIFFDELDSLAPAR---GASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~~r---~~~~~~~-~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
+..+|++|||||++.+.+.+ +..+++. +...|+++++|.+|++... ..+++|| +||.+
T Consensus 1502 r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~-~~~v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1563 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-TTTCEEE-EEECE
T ss_pred hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH-hCCcEEE-EEccc
Confidence 99999999999999998742 3233322 2247899999999998754 3566666 45544
No 118
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.29 E-value=1e-11 Score=140.49 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=124.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc-chhch-HHHHHHHHHHh----hcCCCeEEeecchhhhh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMAS-SERKT-SAALAQAFNTA----QSYSPTILLLRDFDVFR 469 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~-~~g~~-e~~l~~~f~~A----~~~~P~IL~iDeid~L~ 469 (958)
.+.++||+||||||||++|+++|..++.+++.++|.++... +.|.. ...+...|..+ ....++++||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 56789999999999999999999999999999999987743 55554 55677777765 33467999999999998
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchh-hhhhhhcCcEEEEEecCCC----------CC---
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK-EIEKICRQQVLLVAAADSS----------EG--- 535 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~-~~~~~~~~~ViVIaaTn~~----------~~--- 535 (958)
..+...+...+. ....+...|.++++.....- ...+|..... ....+...++++|++++.. ..
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~~Ll~~leg~~~~~-~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~ 206 (363)
T 3hws_A 130 RKSDNPSITRDV--SGEGVQQALLKLIEGTVAAV-PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSG 206 (363)
T ss_dssp CCSSCC---CHH--HHHHHHHHHHHHHHCC-----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-
T ss_pred cccccccccccc--chHHHHHHHHHHhcCceeec-cCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhcccc
Confidence 743222111110 11123333333322100000 0000000000 0011123445566665532 11
Q ss_pred --------------------------------CChhhhccccEEEEcCCCCHHHHHHHHHH----hccCCc------ccC
Q 002159 536 --------------------------------LPPTIRRCFSHEISMGPLTEQQRVEMLSQ----LLQPVS------ELT 573 (958)
Q Consensus 536 --------------------------------Ld~alrrrf~~eIsig~Pde~qR~~Il~~----ll~~~~------~l~ 573 (958)
+.+++.+||+..+.+.+|+.+++..|+.. ++.... ...
T Consensus 207 ~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~ 286 (363)
T 3hws_A 207 IGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVD 286 (363)
T ss_dssp -----------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCE
T ss_pred CCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 78999999999999999999999999986 221100 000
Q ss_pred CCCCcHHHHHHHhhh-c-CCCChhhHHHHHHHHHHHHHHh
Q 002159 574 SDTGSEEFVKDIIGQ-T-SGFMPRDLHALVADAGANLIRK 611 (958)
Q Consensus 574 ~D~~~~~~L~~la~~-t-~Gfv~~DL~~Lv~eA~~~a~~r 611 (958)
... .+..++.++.. + ..+-.+.+..++..+....+.+
T Consensus 287 l~~-~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 287 LEF-RDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EEE-CHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred EEE-CHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 111 13445555543 2 3356788888888877766553
No 119
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=9.5e-12 Score=137.22 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=121.5
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELI 745 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~ 745 (958)
+..|+++.|.+.+++.+...+ ..+ . ..+++|+||+|+|||++|++++..+ +.+++.+++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l----------~~~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIA----------KDG-N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHH----------HSC-C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHH----------HcC-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 345778888888777665443 111 1 2239999999999999999999986 3456666654421
Q ss_pred hccccchhhhHHHHHHHHH-------hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 002159 746 NMYIGESEKNVRDIFQKAR-------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIG 818 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~-------~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~ 818 (958)
....++++++... ...+.||+|||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~---~~~~~~il 142 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------GAQQALRRTMELY---SNSTRFAF 142 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHHT---TTTEEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-------------HHHHHHHHHHhcc---CCCceEEE
Confidence 1234555555544 33478999999998852 2345566666543 35677888
Q ss_pred ecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 819 ASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 819 aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
+||.++.+++++.+ |+. .+.++. ++.++...+++...+..... .+..+..+++.+ .|. .+.+.++++.+
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~-~r~a~~~l~~~ 212 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSK-LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA-EGD-MRQAINNLQST 212 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TTC-HHHHHHHHHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCC-HHHHHHHHHHH
Confidence 88999999999998 886 788884 78888899998877643322 223466777774 443 33334444443
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.27 E-value=1.6e-11 Score=142.37 Aligned_cols=173 Identities=13% Similarity=0.214 Sum_probs=112.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~ 471 (958)
+.+++|+||||+|||||++++++.+ +..++.+++.++...............|.......+.+|+|||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4569999999999999999999998 78899999877543332221111112233332236899999999988641
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCC---CChhhhcccc--E
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--H 546 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~---Ld~alrrrf~--~ 546 (958)
. ....++...++.+.+ .+..+||++.+.+.. +++.+++||. .
T Consensus 210 ~----------~~q~~l~~~l~~l~~-----------------------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~ 256 (440)
T 2z4s_A 210 T----------GVQTELFHTFNELHD-----------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_dssp H----------HHHHHHHHHHHHHHT-----------------------TTCEEEEEESSCGGGCSSCCHHHHHHHHSSB
T ss_pred h----------HHHHHHHHHHHHHHH-----------------------CCCeEEEEECCCHHHHHHHHHHHHhhccCCe
Confidence 0 122334444443321 344566665555544 7899999886 6
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 002159 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGAN 607 (958)
Q Consensus 547 eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~ 607 (958)
.+.++.|+.++|.+|++..+..... ..+ ++.++.++..+.| ..+++..++..+...
T Consensus 257 ~i~l~~p~~e~r~~iL~~~~~~~~~---~i~-~e~l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 257 VAKLEPPDEETRKSIARKMLEIEHG---ELP-EEVLNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHTC---CCC-TTHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 7899999999999999988754322 111 2235667776655 455666666555443
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.26 E-value=3e-11 Score=134.19 Aligned_cols=166 Identities=13% Similarity=0.228 Sum_probs=109.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhccc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s 473 (958)
+.+++|+|||||||||+++++++.+ +..++.+++.++.....+.........|.... ..+.++||||++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-
Confidence 4579999999999999999999998 89999999987654333322222222233222 248899999999886410
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChhhhcccc--EEE
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS--HEI 548 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf~--~eI 548 (958)
.....+...++.+. ..+..+|+++++.+. .+++++++||. ..+
T Consensus 115 ---------~~~~~l~~~l~~~~-----------------------~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 115 ---------RTQIEFFHIFNTLY-----------------------LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp ---------HHHHHHHHHHHHHH-----------------------HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred ---------HHHHHHHHHHHHHH-----------------------HCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 12233333333321 134467777776665 68899999985 678
Q ss_pred EcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
.+++ +.++|.+|++..+..... ..+ ++.++.++..+ | ..+++..++..
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~---~l~-~~~l~~l~~~~-g-~~r~l~~~l~~ 210 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL---ELR-KEVIDYLLENT-K-NVREIEGKIKL 210 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC---CCC-HHHHHHHHHHC-S-SHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHhC-C-CHHHHHHHHHH
Confidence 9998 999999999998864332 222 44567777777 4 23444444443
No 122
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=3.3e-11 Score=135.87 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=127.4
Q ss_pred ccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee--cc--------
Q 002159 672 VKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV--KG-------- 741 (958)
Q Consensus 672 v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v--~~-------- 741 (958)
..|+++.|.+.+.+.+...+. .+ +.+..++|+||+|||||++|++++..++...... .+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~----------~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLS----------LG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHH----------HT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHH----------hC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 457888888887776655431 11 2234689999999999999999999875421100 00
Q ss_pred ------chhhhccc--cchhhhHHHHHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q 002159 742 ------PELINMYI--GESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND 809 (958)
Q Consensus 742 ------~~l~~~~~--Gese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~ 809 (958)
+++..... ......++++++.+.. ..+.||+|||+|.+. ....+.|+..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~Ll~~le~~-- 146 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEEP-- 146 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------HHHHHHHHHHHHSC--
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------HHHHHHHHHHHhcC--
Confidence 01110000 0122456777777653 346899999999884 23456777777753
Q ss_pred CCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCC-CcCHHHHHhhCCCCCCHHHHHH
Q 002159 810 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYA 888 (958)
Q Consensus 810 ~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~-d~~l~~la~~~t~g~sGaDi~~ 888 (958)
..++++|++||.++.+.+++++ |+ ..+.++. ++.++...+++...+.....- +..+..+++.+ .| +..++.+
T Consensus 147 -~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~-l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~-~G-~~r~~~~ 219 (373)
T 1jr3_A 147 -PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDALS 219 (373)
T ss_dssp -CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS-SS-CHHHHHH
T ss_pred -CCceEEEEEeCChHhCcHHHHh--he-eEeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC-CC-CHHHHHH
Confidence 3578888889999999999998 87 6788884 788888999988876544322 22366788874 45 5667777
Q ss_pred HHHHHHH
Q 002159 889 LCADAWF 895 (958)
Q Consensus 889 l~~~A~~ 895 (958)
++..+..
T Consensus 220 ~l~~~~~ 226 (373)
T 1jr3_A 220 LTDQAIA 226 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=2.3e-11 Score=134.43 Aligned_cols=184 Identities=22% Similarity=0.257 Sum_probs=119.6
Q ss_pred CCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC-----Cceeeeccchh
Q 002159 670 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPEL 744 (958)
Q Consensus 670 p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~-----~~~i~v~~~~l 744 (958)
.+..|+++.|.+.+++.+...+. .+ ...+++|+||||+|||++|++++..+. ..++.+++++.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVK----------TG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHH----------HT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHH----------cC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34568889998888776654431 12 223599999999999999999999863 23666665433
Q ss_pred hhccccchhhhHHHHHHHH-H-----hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEE
Q 002159 745 INMYIGESEKNVRDIFQKA-R-----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIG 818 (958)
Q Consensus 745 ~~~~~Gese~~vr~lf~~A-~-----~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~ 818 (958)
.+ ...++..+... . ...+.|++|||+|.+.+ ...+.|+..|+.. ..++.+|+
T Consensus 88 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~~---~~~~~~i~ 145 (327)
T 1iqp_A 88 RG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-------------DAQQALRRTMEMF---SSNVRFIL 145 (327)
T ss_dssp HH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-------------HHHHHHHHHHHHT---TTTEEEEE
T ss_pred Cc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-------------HHHHHHHHHHHhc---CCCCeEEE
Confidence 21 12223322221 1 14578999999998852 3455666666643 34677888
Q ss_pred ecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002159 819 ASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADA 893 (958)
Q Consensus 819 aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~~A 893 (958)
+||.++.+++++.+ |+. .+.++. ++.++...+++...+..... ++..+..++..+ .| +.+.+.++++.+
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~-l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRP-LRDEDIAKRLRYIAENEGLELTEEGLQAILYIA-EG-DMRRAINILQAA 215 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCC-CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH-TT-CHHHHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEecC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC-CC-CHHHHHHHHHHH
Confidence 99999999999988 887 678884 77888888888777644321 223356777763 33 334444444443
No 124
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.23 E-value=5.4e-11 Score=131.66 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=115.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~ 476 (958)
+.+++|+||+|||||+++++++..++..++.++|..+.. ...+...+..+ ...+.++||||++.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~----- 105 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ----- 105 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc-----
Confidence 456999999999999999999999999999999976532 23333444331 246789999999977541
Q ss_pred CCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHH
Q 002159 477 LPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQ 556 (958)
Q Consensus 477 ~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~ 556 (958)
....+...++...-.. .++.......-.....++++|++||.+..+++++++||...+.++.|+.+
T Consensus 106 -------~~~~L~~~l~~~~~~~-------v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 106 -------AEEHLYPAMEDFVMDI-------VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp -------HHHHHHHHHHHSEEEE-------CCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred -------hHHHHHHHHHhhhhHH-------hccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 1222333333321000 00000000000001246899999999999999999999889999999999
Q ss_pred HHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHH
Q 002159 557 QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (958)
Q Consensus 557 qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~e 603 (958)
++.++++.++..... ..+ .+.++.++..+.|.. +.+..++..
T Consensus 172 e~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~G~~-r~l~~~l~~ 213 (324)
T 1hqc_A 172 ELAQGVMRDARLLGV---RIT-EEAALEIGRRSRGTM-RVAKRLFRR 213 (324)
T ss_dssp HHHHHHHHHHHTTTC---CCC-HHHHHHHHHHSCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CCC-HHHHHHHHHHccCCH-HHHHHHHHH
Confidence 999999988765432 222 445677787776643 455555443
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.23 E-value=2.2e-11 Score=131.30 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=107.0
Q ss_pred cccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcC---Cceeeeccchhhhc--
Q 002159 673 KWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINM-- 747 (958)
Q Consensus 673 ~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~---~~~i~v~~~~l~~~-- 747 (958)
+|+++.|.....+.+.+.+. .....+..++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~----------~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVS----------HLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHH----------HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccccceeCCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 46666676655554433321 1122357899999999999999999999875 67999988765321
Q ss_pred ---cccchhh-------hHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------C
Q 002159 748 ---YIGESEK-------NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------D 809 (958)
Q Consensus 748 ---~~Gese~-------~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~ 809 (958)
.+|.... .....|..+ ..++|||||+|.+.. .+...|+..|+... .
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-------------MVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCccc
Confidence 1221100 011223332 457999999998862 23445555554210 1
Q ss_pred CCCcEEEEEecCCC-------CCCChhhcCcCCccceeeccCCCCHH---HHHHHHHHHHhh----ccCC--CCcC---H
Q 002159 810 SSQDLFIIGASNRP-------DLIDPALLRPGRFDKLLYVGVNSDVS---YRERVLKALTRK----FKLL--EDVS---L 870 (958)
Q Consensus 810 ~~~~v~VI~aTNrp-------~~ldpaLlrpgRfd~~I~v~~ppd~~---~r~~Il~~~~~~----~~~~--~d~~---l 870 (958)
...++.+|+|||.+ ..++++|+. ||.. +.+.+||-.+ ....+++.+++. .... ..++ +
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12357899999985 246788887 8864 3444444333 233333333322 2221 1233 2
Q ss_pred HHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 871 YSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 871 ~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
..+.. .+|.| ++|.++++.|+..+
T Consensus 215 ~~L~~---~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 215 ETLLN---YRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHH---SCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh---CCCCCCHHHHHHHHHHHHHhC
Confidence 33333 34554 58889888877654
No 126
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=2.2e-11 Score=164.90 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=95.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~ 476 (958)
+.++++.||+|||||++++.+|+.+|.+++.++|++- -....+..+|..+.. .++++++||++.+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~------ld~~~lg~~~~g~~~-~Gaw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDS------FDYQVLSRLLVGITQ-IGAWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSS------CCHHHHHHHHHHHHH-HTCEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCC------CChhHhhHHHHHHHh-cCCEeeehhhhhcCh------
Confidence 3568999999999999999999999999999999873 344566777777664 468999999987654
Q ss_pred CCCccccchHHHHHHHHHhcCCCCCcc-ccccCCCCchhhhhhhhcCcEEEEEecC----CCCCCChhhhccccEEEEcC
Q 002159 477 LPNDQVGLSSEVASVIREFTEPSAEDE-DEESHGYFPVKEIEKICRQQVLLVAAAD----SSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 477 ~~~~~~~~~~~v~~~L~~l~~~l~~~~-~~~~~g~~~~~~~~~~~~~~ViVIaaTn----~~~~Ld~alrrrf~~eIsig 551 (958)
...+.+...+..+...+.... .-...| .......+..|++|.| ....+|+++++|| +.+.+.
T Consensus 712 ------evLs~l~~~l~~i~~al~~~~~~i~~~g------~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~ 778 (2695)
T 4akg_A 712 ------KVLSAVSANIQQIQNGLQVGKSHITLLE------EETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMK 778 (2695)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCSEEECSS------SEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECC
T ss_pred ------HHHHHHHHHHHHHHHHHHcCCcEEeeCC------cEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEee
Confidence 123333332222211100000 000001 0112356677888888 3457999999998 689999
Q ss_pred CCCHHHHHHHH
Q 002159 552 PLTEQQRVEML 562 (958)
Q Consensus 552 ~Pde~qR~~Il 562 (958)
.||.+...+|.
T Consensus 779 ~Pd~~~i~ei~ 789 (2695)
T 4akg_A 779 SPQSGTIAEMI 789 (2695)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999888875
No 127
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.22 E-value=5.3e-11 Score=156.35 Aligned_cols=130 Identities=22% Similarity=0.299 Sum_probs=89.9
Q ss_pred eeeccccchhhhh--c--CCCCCCcEEEecCCCChhHHHHHHHHHHcC---Cceeeeccchhhhcc----cc--------
Q 002159 690 TVQLPLLHKDLFS--S--GLRKRSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINMY----IG-------- 750 (958)
Q Consensus 690 ~i~~~l~~~~~~~--~--~i~~~~~iLL~GppGtGKTtLakaiA~~~~---~~~i~v~~~~l~~~~----~G-------- 750 (958)
...++...+++.. . |+.++.-++|+|+||+|||+||..+|..+. .+++.+++.+....+ +|
T Consensus 710 ~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i 789 (2050)
T 3cmu_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC 789 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEE
T ss_pred cceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEE
Confidence 3345555555433 2 689999999999999999999999998773 458888876655443 33
Q ss_pred chhhhHHHHHHHHHh----cCCcEEEEcccccccC-CC--CCCCC-CcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 751 ESEKNVRDIFQKARS----ARPCVIFFDELDSLAP-AR--GASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 751 ese~~vr~lf~~A~~----~~P~ILfiDEiD~l~~-~r--~~~~~-~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
.++.++.+++..++. ..|++||||.++.+.. .+ +..++ +.+...|.+++++..|.++.. ..++.||++.
T Consensus 790 ~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk-e~~v~VI~l~ 866 (2050)
T 3cmu_A 790 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLIFIN 866 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-TTTCEEEEEE
T ss_pred ecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH-HhCCEEEEec
Confidence 234557777777765 7899999999999986 21 11111 124556778898888887643 3566666554
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.21 E-value=1.7e-10 Score=121.31 Aligned_cols=164 Identities=11% Similarity=0.102 Sum_probs=104.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhccc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg---~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s 473 (958)
+.+++|+|||||||||++++++++++ ..+..+++.++....... +.. ...+.+++|||++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~- 120 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTAL--------LEG--LEQFDLICIDDVDAVAGHP- 120 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--------HHh--ccCCCEEEEeccccccCCH-
Confidence 45799999999999999999999874 678888887765432211 111 1357899999999875410
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcE-EEEEecCCCC---CCChhhhcccc--EE
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQV-LLVAAADSSE---GLPPTIRRCFS--HE 547 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~V-iVIaaTn~~~---~Ld~alrrrf~--~e 547 (958)
.....+...++... ..+.+ +|++++..+. .+.+.+++||. ..
T Consensus 121 ---------~~~~~l~~~l~~~~-----------------------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~ 168 (242)
T 3bos_A 121 ---------LWEEAIFDLYNRVA-----------------------EQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLT 168 (242)
T ss_dssp ---------HHHHHHHHHHHHHH-----------------------HHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEE
T ss_pred ---------HHHHHHHHHHHHHH-----------------------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCce
Confidence 01222333333221 12333 4444444443 45588888886 88
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
+.++.|+.+++.++++.++..... ..+ .+.++.++..+.| ..+.+..++..+...+
T Consensus 169 i~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAAMRGL---QLP-EDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHHHTTC---CCC-HHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 999999999999999988864332 222 3456677777655 4455555555554433
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.21 E-value=6e-10 Score=125.72 Aligned_cols=193 Identities=23% Similarity=0.242 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccccc--------
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS-------- 437 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l---------g~~~~~I~~~~l~s~~-------- 437 (958)
..+.+...+...+. ...+.+++|+|||||||||+++++++.+ +..++.++|.......
T Consensus 27 ~~~~l~~~l~~~~~-----~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 27 ELRRLAEVLAPALR-----GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp HHHHHHHTTGGGTS-----SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 44555555544332 2345679999999999999999999998 7889999987643211
Q ss_pred --------hhc-hHHHHHHHHHHhhc-CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCcccccc
Q 002159 438 --------ERK-TSAALAQAFNTAQS-YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEES 507 (958)
Q Consensus 438 --------~g~-~e~~l~~~f~~A~~-~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~ 507 (958)
.+. ....+..++..... ..|++++|||+|.+.... .....+..+++.. ..
T Consensus 102 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~~~-~~--------- 161 (387)
T 2v1u_A 102 AVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITRIN-QE--------- 161 (387)
T ss_dssp HHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHHGG-GC---------
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhhch-hh---------
Confidence 111 12224444444433 348899999999987510 0112222222211 10
Q ss_pred CCCCchhhhhhhhcCcEEEEEecCCC---CCCChhhhccccE-EEEcCCCCHHHHHHHHHHhccC--CcccCCCCCcHHH
Q 002159 508 HGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQP--VSELTSDTGSEEF 581 (958)
Q Consensus 508 ~g~~~~~~~~~~~~~~ViVIaaTn~~---~~Ld~alrrrf~~-eIsig~Pde~qR~~Il~~ll~~--~~~l~~D~~~~~~ 581 (958)
.....++.+|++||.+ ..+++.+++||.. .+.+++|+.+++.+|++..+.. ... ..+.+ .
T Consensus 162 ----------~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~~---~ 227 (387)
T 2v1u_A 162 ----------LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDPD---V 227 (387)
T ss_dssp ----------C-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCSS---H
T ss_pred ----------cCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCHH---H
Confidence 0004578899999887 6788999998864 8999999999999999987653 111 11222 2
Q ss_pred HHHHhhhcC---CCChhhHHHHHHHHHHH
Q 002159 582 VKDIIGQTS---GFMPRDLHALVADAGAN 607 (958)
Q Consensus 582 L~~la~~t~---Gfv~~DL~~Lv~eA~~~ 607 (958)
++.++..+. |. ++.+..++..+...
T Consensus 228 ~~~l~~~~~~~~G~-~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 228 VPLCAALAAREHGD-ARRALDLLRVAGEI 255 (387)
T ss_dssp HHHHHHHHHSSSCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 444555544 53 34444555555433
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.1e-10 Score=130.78 Aligned_cols=188 Identities=14% Similarity=0.187 Sum_probs=117.9
Q ss_pred CCCccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHc-CCc------------
Q 002159 669 VPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLN------------ 735 (958)
Q Consensus 669 ~p~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~-~~~------------ 735 (958)
..+.+|+++.|.+.+.+.+...+. ..+ ...+++|+||||+||||+++++++++ +..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~---------~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD---------QPR--DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT---------CTT--CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh---------hCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 344568888888887776654430 111 12239999999999999999999964 211
Q ss_pred ----------------eeeeccchhhhccccch-hhhHHHHHHHHH--------------hcCCcEEEEcccccccCCCC
Q 002159 736 ----------------FLSVKGPELINMYIGES-EKNVRDIFQKAR--------------SARPCVIFFDELDSLAPARG 784 (958)
Q Consensus 736 ----------------~i~v~~~~l~~~~~Ges-e~~vr~lf~~A~--------------~~~P~ILfiDEiD~l~~~r~ 784 (958)
++.+...+. +.. ...+++.++.+. ...|.|++|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred ccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 122221110 110 113555555442 2367799999999853
Q ss_pred CCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccC
Q 002159 785 ASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL 864 (958)
Q Consensus 785 ~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~ 864 (958)
....+.|+..|+.. ..++.+|.+||.++.+.+++++ |+ ..+.++. ++.++...+++...++..+
T Consensus 148 ---------~~~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~-~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPA-PSDSEISTILSDVVTNERI 211 (354)
T ss_dssp ---------HHHHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCC-cCHHHHHHHHHHHHHHcCC
Confidence 22345566666644 2457788889999999999998 99 7788985 7888889998887765433
Q ss_pred C-C-CcCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002159 865 L-E-DVSLYSIAKKCPPNFTGADMYALCADAW 894 (958)
Q Consensus 865 ~-~-d~~l~~la~~~t~g~sGaDi~~l~~~A~ 894 (958)
. + +..+..+++.+ .| +-+++.++++.++
T Consensus 212 ~~~~~~~l~~i~~~~-~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 212 QLETKDILKRIAQAS-NG-NLRVSLLMLESMA 241 (354)
T ss_dssp EECCSHHHHHHHHHH-TT-CHHHHHHHHTHHH
T ss_pred CCCcHHHHHHHHHHc-CC-CHHHHHHHHHHHH
Confidence 2 2 34477788773 22 3444445554433
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.20 E-value=1.6e-10 Score=128.29 Aligned_cols=168 Identities=14% Similarity=0.239 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
+..+.+...+.. .+.+..+|++||||||||++++++|++++..++++++.+.. ...++..+....
T Consensus 33 ~~~~~l~~~l~~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~ 97 (324)
T 3u61_B 33 FDKETFKSITSK--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFA 97 (324)
T ss_dssp HHHHHHHHHHHT--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHH
Confidence 455666665541 13344578888999999999999999999999999986521 334444444332
Q ss_pred cC-----CCeEEeecchhhhh-hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEE
Q 002159 454 SY-----SPTILLLRDFDVFR-NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (958)
Q Consensus 454 ~~-----~P~IL~iDeid~L~-~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (958)
.. .+.+++|||+|.+. .. ....+...++.. ..++.+|
T Consensus 98 ~~~~~~~~~~vliiDEi~~l~~~~------------~~~~L~~~le~~-------------------------~~~~~iI 140 (324)
T 3u61_B 98 SAASFDGRQKVIVIDEFDRSGLAE------------SQRHLRSFMEAY-------------------------SSNCSII 140 (324)
T ss_dssp HBCCCSSCEEEEEEESCCCGGGHH------------HHHHHHHHHHHH-------------------------GGGCEEE
T ss_pred hhcccCCCCeEEEEECCcccCcHH------------HHHHHHHHHHhC-------------------------CCCcEEE
Confidence 22 56899999999886 30 112222222211 3567899
Q ss_pred EecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc----CCCCCcHHHHHHHhhhcCCCCh
Q 002159 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL----TSDTGSEEFVKDIIGQTSGFMP 594 (958)
Q Consensus 528 aaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l----~~D~~~~~~L~~la~~t~Gfv~ 594 (958)
++||.+..+++++++|| ..+.++.|+.++|.+|++.+....... ....+....++.++..+.|-..
T Consensus 141 ~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 141 ITANNIDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp EEESSGGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred EEeCCccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 99999999999999998 579999999999877766554221100 1112212456777777665443
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.20 E-value=1.5e-11 Score=123.82 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=89.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--cchhchHHHHHHHHHHhhcC-CCeEEeec
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSY-SPTILLLR 463 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s--~~~g~~e~~l~~~f~~A~~~-~P~IL~iD 463 (958)
+.+++|+||+|||||+++++++..+ +.+++.+++..+.. .+.+.....+...+..+... .|.+++||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4579999999999999999999997 77888888876552 23455566677777776654 68899999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCCh
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPP 538 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~ 538 (958)
|++.+....... ... ..+...+..+.+ ..++++|++||.+. .+++
T Consensus 123 e~~~l~~~~~~~---~~~----~~~~~~l~~~~~-----------------------~~~~~ii~~~~~~~~~~~~~~~~ 172 (187)
T 2p65_A 123 EIHTVVGAGAVA---EGA----LDAGNILKPMLA-----------------------RGELRCIGATTVSEYRQFIEKDK 172 (187)
T ss_dssp TGGGGSSSSSSC---TTS----CCTHHHHHHHHH-----------------------TTCSCEEEEECHHHHHHHTTTCH
T ss_pred CHHHhccccccc---ccc----hHHHHHHHHHHh-----------------------cCCeeEEEecCHHHHHHHHhccH
Confidence 999987532100 001 112222322211 45678899998764 6899
Q ss_pred hhhccccEEEEcCCCC
Q 002159 539 TIRRCFSHEISMGPLT 554 (958)
Q Consensus 539 alrrrf~~eIsig~Pd 554 (958)
++++||.. +.++.|+
T Consensus 173 ~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 173 ALERRFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHEEE-EECCSCC
T ss_pred HHHHhcCc-ccCCCCC
Confidence 99999974 8888875
No 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.19 E-value=9.7e-11 Score=129.39 Aligned_cols=153 Identities=9% Similarity=0.066 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccccc-------
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASS------- 437 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l----------g~~~~~I~~~~l~s~~------- 437 (958)
..+.+...+.+.+. ...+.+++|+||||||||++++.+++++ +..++++||..+.+.+
T Consensus 28 E~~~i~~~L~~~i~-----~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~ 102 (318)
T 3te6_A 28 DFTRIFLPIYDSLM-----SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW 102 (318)
T ss_dssp HHHHHHHHHHHHHH-----TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHH
Confidence 34455555555443 2456789999999999999999999998 3568899997654321
Q ss_pred ---------hhchHHHHHHHHHHh--hcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccc
Q 002159 438 ---------ERKTSAALAQAFNTA--QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEE 506 (958)
Q Consensus 438 ---------~g~~e~~l~~~f~~A--~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~ 506 (958)
.+.....++..|... ....++|+++||+|.+.. + ..+..+++ +.
T Consensus 103 ~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~----------q----~~L~~l~~-~~---------- 157 (318)
T 3te6_A 103 FAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS----------E----KILQYFEK-WI---------- 157 (318)
T ss_dssp HHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC----------T----HHHHHHHH-HH----------
T ss_pred HHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc----------c----hHHHHHHh-cc----------
Confidence 233456788888874 345789999999998861 0 11222221 11
Q ss_pred cCCCCchhhhhhhhcCcEEEEEecCCCCCC----Chhhhcccc-EEEEcCCCCHHHHHHHHHHhccC
Q 002159 507 SHGYFPVKEIEKICRQQVLLVAAADSSEGL----PPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L----d~alrrrf~-~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
.....+++||+++|..+.. ++.+++||. ..|.+++++.+|..+|++..+..
T Consensus 158 -----------~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 158 -----------SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -----------HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 0125679999999987643 345567885 68999999999999999988754
No 134
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.18 E-value=8.6e-11 Score=129.25 Aligned_cols=186 Identities=10% Similarity=0.132 Sum_probs=117.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccch------------hchH-HHHHHHHHHhhcCCCeE
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE------------RKTS-AALAQAFNTAQSYSPTI 459 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~------------g~~e-~~l~~~f~~A~~~~P~I 459 (958)
+...++|+||||||||++++++|+.+ +..++.++|..+..... +... ..+.. .......++
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~v 122 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTE---AVRRRPYSV 122 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHH---HHHHCSSEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHH---HHHhCCCeE
Confidence 34579999999999999999999998 45699999976543211 1000 12222 222334589
Q ss_pred EeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC-------
Q 002159 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS------- 532 (958)
Q Consensus 460 L~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~------- 532 (958)
+||||+|.+.+. ....+..+++.-.- ...........++++|+|||.
T Consensus 123 l~lDEi~~l~~~------------~~~~Ll~~le~~~~--------------~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 123 ILFDAIEKAHPD------------VFNILLQMLDDGRL--------------TDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp EEEETGGGSCHH------------HHHHHHHHHHHSEE--------------ECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred EEEeChhhcCHH------------HHHHHHHHHhcCEE--------------EcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 999999987541 22233333322110 000000112347789999998
Q ss_pred -------------------CCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCccc------CCCCCcHHHHHHHhh
Q 002159 533 -------------------SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL------TSDTGSEEFVKDIIG 587 (958)
Q Consensus 533 -------------------~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l------~~D~~~~~~L~~la~ 587 (958)
...+++++++||...+.+.+|+.+++..|++.++...... .... ....++.++.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 255 (311)
T 4fcw_A 177 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLEL-TEAAKDFLAE 255 (311)
T ss_dssp TTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEE-CHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEe-CHHHHHHHHH
Confidence 4468889999999999999999999999999887542110 0011 1344566666
Q ss_pred hcC--CCChhhHHHHHHHHHHHHHHh
Q 002159 588 QTS--GFMPRDLHALVADAGANLIRK 611 (958)
Q Consensus 588 ~t~--Gfv~~DL~~Lv~eA~~~a~~r 611 (958)
... .+..+++..+++.+...++.+
T Consensus 256 ~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 256 RGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCCccCCchhHHHHHHHHHHHHHHH
Confidence 443 467788888888776655543
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=5.5e-10 Score=115.23 Aligned_cols=145 Identities=13% Similarity=0.198 Sum_probs=98.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhh------cCCCeEEeecchhh
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQ------SYSPTILLLRDFDV 467 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~------~~~P~IL~iDeid~ 467 (958)
+++|+||+|+|||++++.++..+ ...++.+++....+ ...+...+.... ...+.+++|||++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 35688888765332 122222222221 24688999999998
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEE
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~e 547 (958)
+... ....+...++. ...++.+|++||.+..+++.+++|+. .
T Consensus 114 l~~~------------~~~~l~~~l~~-------------------------~~~~~~~i~~~~~~~~~~~~l~~r~~-~ 155 (226)
T 2chg_A 114 LTAD------------AQAALRRTMEM-------------------------YSKSCRFILSCNYVSRIIEPIQSRCA-V 155 (226)
T ss_dssp SCHH------------HHHHHHHHHHH-------------------------TTTTEEEEEEESCGGGSCHHHHTTSE-E
T ss_pred cCHH------------HHHHHHHHHHh-------------------------cCCCCeEEEEeCChhhcCHHHHHhCc-e
Confidence 7541 11122222211 14567888999999999999999986 8
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+.++.|+.++..++++..+..... ..+ ...++.++..+.|
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~g 195 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV---KIT-EDGLEALIYISGG 195 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CBC-HHHHHHHHHHHTT
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 999999999999999987754322 122 3446667766655
No 136
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.15 E-value=4.9e-11 Score=143.94 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=93.3
Q ss_pred cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCC------------------CCCCCcEEEEEecCCC--CC
Q 002159 766 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL------------------NDSSQDLFIIGASNRP--DL 825 (958)
Q Consensus 766 ~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~------------------~~~~~~v~VI~aTNrp--~~ 825 (958)
+.+.+|||||++.+. ..+.+.|+..|+.- .....++.||+|||+. +.
T Consensus 200 a~~gvL~LDEi~~l~-------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 200 AHKGVLFIDEIATLS-------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTTSEEEETTGGGSC-------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred cCCCEEEEechhhCC-------------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 356799999999874 23455666655411 0112367899999987 67
Q ss_pred CChhhcCcCCcc---ceeeccC--CCCHHHHHHHHHHHHhhcc------CCCCcCHHHHHhhCC--CCC------CHHHH
Q 002159 826 IDPALLRPGRFD---KLLYVGV--NSDVSYRERVLKALTRKFK------LLEDVSLYSIAKKCP--PNF------TGADM 886 (958)
Q Consensus 826 ldpaLlrpgRfd---~~I~v~~--ppd~~~r~~Il~~~~~~~~------~~~d~~l~~la~~~t--~g~------sGaDi 886 (958)
++|+|++ ||+ ..++++. +...+....+++.+.+... .-.+..+..|.+..+ .|- +-+++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 9999999 997 3444431 1234556666655443221 112223445554321 342 67999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccccCCcccccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002159 887 YALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLR 950 (958)
Q Consensus 887 ~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~s~~~l~~y~~~~ 950 (958)
.++++.|...|..+. ...|+.+|+.+|++. +..+.++.++.|-.-.
T Consensus 345 ~~llr~A~~~A~~~~-----------------~~~I~~edv~~A~~~-~~~i~~~~~e~~l~~~ 390 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKG-----------------KKYVEREDVIEAVKM-AKPLEKQLADWYIERK 390 (604)
T ss_dssp HHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----------------cccccHHHHHHHHHh-hhhhHHHHHHHHhccc
Confidence 999999877764331 125899999999964 3445666666665543
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=1e-09 Score=114.53 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=106.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A~ 453 (958)
..++|+||+|+||||+++.+++.++.. ++.++... ......++..++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 119 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQ 119 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhh
Confidence 468999999999999999999987532 22222221 123344555555443
Q ss_pred ----cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEe
Q 002159 454 ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (958)
Q Consensus 454 ----~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaa 529 (958)
...+.+++|||+|.+.. .....++..+.. ...++.+|++
T Consensus 120 ~~~~~~~~~vlviDe~~~l~~---------------~~~~~l~~~l~~----------------------~~~~~~~i~~ 162 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEE----------------------PPEHVKFLLA 162 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSCH---------------HHHHHHHHHHHS----------------------CCTTEEEEEE
T ss_pred hchhcCCceEEEEECcccccH---------------HHHHHHHHHHhc----------------------CCCceEEEEE
Confidence 23578999999997643 112222222211 1456888999
Q ss_pred cCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 530 Tn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
|+.+..+++.+++|+ ..+.++.|+.++..++++..+..... ..+ ...++.++..+.| .++.+..++..+
T Consensus 163 t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~G-~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI---AHE-PRALQLLARAAEG-SLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC---CBC-HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999889999998885 78999999999999999988754322 122 3457788888877 566666666554
No 138
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.13 E-value=1.3e-10 Score=128.16 Aligned_cols=170 Identities=19% Similarity=0.303 Sum_probs=101.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh-----ccccchh-------hhHHHHHHHHHhcCCcE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESE-------KNVRDIFQKARSARPCV 770 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~-----~~~Gese-------~~vr~lf~~A~~~~P~I 770 (958)
.....++|+||||||||++|++++... +.+|+.++++.+.. ..+|... ......|..|. .++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~ 99 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGT 99 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCE
Confidence 346789999999999999999999965 57899998766532 1222110 12234455553 469
Q ss_pred EEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCC--------CCCCcEEEEEecCCC-------CCCChhhcCcCC
Q 002159 771 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP-------DLIDPALLRPGR 835 (958)
Q Consensus 771 LfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~--------~~~~~v~VI~aTNrp-------~~ldpaLlrpgR 835 (958)
|||||+|.+.. .+...|+..|+... ....++.||+|||++ ..+++.|.. |
T Consensus 100 L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--R 164 (304)
T 1ojl_A 100 LFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--R 164 (304)
T ss_dssp EEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--h
Confidence 99999998852 34556666665421 112458899999986 124445554 5
Q ss_pred ccceeeccCCCCHHH---HHHHHHHHHhhc----cC-CCCcC---HHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002159 836 FDKLLYVGVNSDVSY---RERVLKALTRKF----KL-LEDVS---LYSIAKKCPPNFTG--ADMYALCADAWFHA 897 (958)
Q Consensus 836 fd~~I~v~~ppd~~~---r~~Il~~~~~~~----~~-~~d~~---l~~la~~~t~g~sG--aDi~~l~~~A~~~A 897 (958)
|. .+.+.+||-.+. ...+++.++++. .. ...++ +..+... .|.| ++|.+++..|+..+
T Consensus 165 l~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~---~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 165 LN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY---DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC---CCSSHHHHHHHHHHHHHHHC
T ss_pred cC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhC
Confidence 54 455555554432 333445444332 11 11223 3344443 3444 68888888877654
No 139
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.11 E-value=5.2e-10 Score=129.82 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=99.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhh----cCCCeEEeecchhhhhhccc
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVS 473 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----~~~P~IL~iDeid~L~~~~s 473 (958)
.+++|+|||||||||+++++++.++..++.+++.. .....++..+..+. ...+.++||||+|.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-- 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-- 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--
Confidence 46999999999999999999999999999998753 22334555555544 346899999999988541
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec--CCCCCCChhhhccccEEEEcC
Q 002159 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA--DSSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT--n~~~~Ld~alrrrf~~eIsig 551 (958)
.+ ..++..+ + .+.+++|++| |....+++++++|+. .+.+.
T Consensus 122 ------~q-------~~LL~~l-e-----------------------~~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~ 163 (447)
T 3pvs_A 122 ------QQ-------DAFLPHI-E-----------------------DGTITFIGATTENPSFELNSALLSRAR-VYLLK 163 (447)
T ss_dssp ----------------CCHHHH-H-----------------------TTSCEEEEEESSCGGGSSCHHHHTTEE-EEECC
T ss_pred ------HH-------HHHHHHH-h-----------------------cCceEEEecCCCCcccccCHHHhCcee-EEeeC
Confidence 11 1111111 0 2457777777 344578999999974 78899
Q ss_pred CCCHHHHHHHHHHhccCCccc----CCCCCcHHHHHHHhhhcCC
Q 002159 552 PLTEQQRVEMLSQLLQPVSEL----TSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 552 ~Pde~qR~~Il~~ll~~~~~l----~~D~~~~~~L~~la~~t~G 591 (958)
.|+.+++..+++..+.....- .... .++.++.++..+.|
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i-~~~al~~L~~~~~G 206 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVL-PDETRRAIAELVNG 206 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEEC-CHHHHHHHHHHHCS
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcC-CHHHHHHHHHHCCC
Confidence 999999999999988652110 0012 24556777777655
No 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.11 E-value=5.4e-10 Score=152.18 Aligned_cols=344 Identities=18% Similarity=0.261 Sum_probs=174.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccccchhchHHHHHHHHHHh----hc------------CCCeE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKTSAALAQAFNTA----QS------------YSPTI 459 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l-g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A----~~------------~~P~I 459 (958)
+.+|||+||+|||||++++...+.+ +..++.++++. ..+...+...++.. .. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~------~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS------ATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT------TCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC------CCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3459999999999998876554444 55677888875 23344454544421 00 12368
Q ss_pred EeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-----C
Q 002159 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----E 534 (958)
Q Consensus 460 L~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-----~ 534 (958)
+|+||++.-.. +..+ .....++|+++++ .+||..........-.++.+|||+|.+ .
T Consensus 1378 lFiDDiNmp~~---------D~yG-tQ~~ielLrqlld---------~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~ 1438 (3245)
T 3vkg_A 1378 VFCDEINLPST---------DKYG-TQRVITFIRQMVE---------KGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRV 1438 (3245)
T ss_dssp EEETTTTCCCC---------CTTS-CCHHHHHHHHHHH---------HSEEEETTTTEEEEESSEEEEEEECCTTSTTCC
T ss_pred EEecccCCCCc---------cccc-cccHHHHHHHHHH---------cCCeEECCCCeEEEecCeEEEEEcCCCCCCCCc
Confidence 99999974322 2222 2245667777754 233332222222334678999999876 4
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCC--cH-------HHHHHHhh------hcC-CCChhhHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG--SE-------EFVKDIIG------QTS-GFMPRDLH 598 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~--~~-------~~L~~la~------~t~-Gfv~~DL~ 598 (958)
.+++.+.|+|. .+.++.|+.+....|+..++.......+++. .. .....+.. +.| -|..+|+.
T Consensus 1439 ~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLs 1517 (3245)
T 3vkg_A 1439 QLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELS 1517 (3245)
T ss_dssp CCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHH
T ss_pred cCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHH
Confidence 58999999984 5999999999999997765432111111111 01 11111111 112 27899999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCcchhhhhccccHHH---HHHHHHhhcc-cccc----cCCCC---
Q 002159 599 ALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKED---LVKAMERSKK-RNAS----ALGAP--- 667 (958)
Q Consensus 599 ~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed---~~~al~~~~~-~~~s----~l~~~--- 667 (958)
.+++.-... .... .. .....+..-..++... .-....+..+| |.+.+...-. ..+. ....+
T Consensus 1518 rv~qGll~~-~~~~--~~----~~~~~lvrLW~HE~~R-VF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf 1589 (3245)
T 3vkg_A 1518 RWDRALLEA-IQTM--DG----CTLEGLVRLWAHEALR-LFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILY 1589 (3245)
T ss_dssp HHHHHHHHH-HHTS--SC----CCTTHHHHHHHHHHHH-HHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCC
T ss_pred HHHHHHHHh-cCcc--cc----CCHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcch
Confidence 888643221 1110 00 0111111111111000 00011222222 1222221110 0000 00000
Q ss_pred -CCCCccccccccccccccccceee--------ecc--c-----cchhhhhcC-CCCCCcEEEecCCCChhHHHHHHHHH
Q 002159 668 -KVPNVKWEDVGGLEDVKKSILDTV--------QLP--L-----LHKDLFSSG-LRKRSGVLLYGPPGTGKTLLAKAVAT 730 (958)
Q Consensus 668 -~~p~v~~~di~Gl~~vk~~l~e~i--------~~~--l-----~~~~~~~~~-i~~~~~iLL~GppGtGKTtLakaiA~ 730 (958)
..-...+..+ ..+.+++.+.+.+ .+. + .|--...+- ..|+.+.||+|..|+||++|+|..|.
T Consensus 1590 ~~f~~~~Y~~v-~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~ 1668 (3245)
T 3vkg_A 1590 SNWLTKDYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAW 1668 (3245)
T ss_dssp CSSCC----CC-CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccccCccC-CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHH
Confidence 0000011111 1111111111110 000 1 111112222 24567899999999999999999999
Q ss_pred HcCCceeeeccchhhhccccchhhhHHHHHHHHH-hcCCcEEEEcccc
Q 002159 731 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR-SARPCVIFFDELD 777 (958)
Q Consensus 731 ~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~-~~~P~ILfiDEiD 777 (958)
.++..++.+....-++ ..+-...++.++.+|- +..|.+++|+|-+
T Consensus 1669 i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1669 MNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp HTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred HhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 9999999887533221 2344567899999885 5678888888764
No 141
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.11 E-value=3.7e-10 Score=125.77 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=90.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------ccccchhchHHHHHHHHHHhhcCC---CeEEeecchhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASSERKTSAALAQAFNTAQSYS---PTILLLRDFDVF 468 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~------l~s~~~g~~e~~l~~~f~~A~~~~---P~IL~iDeid~L 468 (958)
.+++|+||||||||++++++|+.++..+..++|.. +.+....... ...|. .... .+++||||++.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEEE--EEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCceE--eccCcccccEEEEEccccC
Confidence 46999999999999999999999999999998842 1111100000 00000 0012 379999999976
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----CCChhhhcc
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRRC 543 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----~Ld~alrrr 543 (958)
.+. ....+...+++..-. ..| .......++++|+|+|... .+++++++|
T Consensus 122 ~~~------------~~~~Ll~~l~~~~~~--------~~g------~~~~~~~~~~viat~np~~~~~~~~l~~~l~~R 175 (331)
T 2r44_A 122 PAK------------VQSALLECMQEKQVT--------IGD------TTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDR 175 (331)
T ss_dssp CHH------------HHHHHHHHHHHSEEE--------ETT------EEEECCSSCEEEEEECTTCCSCCCCCCHHHHTT
T ss_pred CHH------------HHHHHHHHHhcCcee--------eCC------EEEECCCCEEEEEecCCCcccCcccCCHHHHhh
Confidence 541 122223333221100 000 0011245688888888443 389999999
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhccC
Q 002159 544 FSHEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 544 f~~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
|...+.++.|+.++|.+|++..+..
T Consensus 176 f~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 176 FMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred eeEEEEcCCCCHHHHHHHHHhcccc
Confidence 9889999999999999999988754
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.10 E-value=5.7e-11 Score=116.34 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
..+..++|+||||||||++|++++... +.+|+ +++..+... ......|..| ..++|||||+|.+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~- 90 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTR- 90 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCH-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCH-
Confidence 345679999999999999999999987 67899 988776543 3445566666 346999999998852
Q ss_pred CCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 783 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 783 r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.....|+..|... ..++.+|+|||++
T Consensus 91 ------------~~q~~Ll~~l~~~---~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 ------------EQQYHLVQLQSQE---HRPFRLIGIGDTS 116 (145)
T ss_dssp ------------HHHHHHHHHHHSS---SCSSCEEEEESSC
T ss_pred ------------HHHHHHHHHHhhc---CCCEEEEEECCcC
Confidence 3445666666433 3457788999975
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.10 E-value=2.7e-09 Score=119.22 Aligned_cols=180 Identities=21% Similarity=0.243 Sum_probs=112.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~ 476 (958)
...++|+||||+|||||++++|+.++..+...+++.+.. ...+...+... ....|+|+||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~~--~~~~v~~iDE~~~l~~~----- 117 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSL--ERGDVLFIDEIHRLNKA----- 117 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHC--CTTCEEEEETGGGCCHH-----
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHHc--cCCCEEEEcchhhcCHH-----
Confidence 356999999999999999999999999887777654321 12233333322 24689999999987541
Q ss_pred CCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHH
Q 002159 477 LPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQ 556 (958)
Q Consensus 477 ~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~ 556 (958)
....+...++......... .+. ..... ...-.++.++++|+.+..+++.+++||.....+..|+.+
T Consensus 118 -------~~e~L~~~~~~~~~~i~~~-----~~~-~~~~i-~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~ 183 (334)
T 1in4_A 118 -------VEELLYSAIEDFQIDIMIG-----KGP-SAKSI-RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVK 183 (334)
T ss_dssp -------HHHHHHHHHHTSCCCC----------------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred -------HHHHHHHHHHhcccceeec-----cCc-ccccc-cccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHH
Confidence 1111111111110000000 000 00000 011245778889999999999999999888999999999
Q ss_pred HHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002159 557 QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (958)
Q Consensus 557 qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a 608 (958)
++.+|++........ ..+ ++.+..++.++.|. +++...+++.+...+
T Consensus 184 ~l~~iL~~~~~~~~~---~~~-~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 184 ELKEIIKRAASLMDV---EIE-DAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp HHHHHHHHHHHHTTC---CBC-HHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---CcC-HHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 999999987754322 222 34577888888774 466666666554443
No 144
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=4.7e-10 Score=132.81 Aligned_cols=165 Identities=16% Similarity=0.254 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHH-------HHHHHHHHh-----hcCCCeEEeec
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA-------ALAQAFNTA-----QSYSPTILLLR 463 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~-------~l~~~f~~A-----~~~~P~IL~iD 463 (958)
...++||+||||||||++|+++|+++|..+++++|+++.......... .+...|..+ ....+.+++||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 457899999999999999999999999999999998765432111000 011222222 22468999999
Q ss_pred chhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhcc
Q 002159 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC 543 (958)
Q Consensus 464 eid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrr 543 (958)
|+|.+... ++ +....+..+++. ...++++|+++.....+++ +++
T Consensus 156 Eid~l~~~--------~~-~~l~~L~~~l~~-------------------------~~~~iIli~~~~~~~~l~~-l~~- 199 (516)
T 1sxj_A 156 EVDGMSGG--------DR-GGVGQLAQFCRK-------------------------TSTPLILICNERNLPKMRP-FDR- 199 (516)
T ss_dssp SGGGCCTT--------ST-THHHHHHHHHHH-------------------------CSSCEEEEESCTTSSTTGG-GTT-
T ss_pred CCCccchh--------hH-HHHHHHHHHHHh-------------------------cCCCEEEEEcCCCCccchh-hHh-
Confidence 99988651 11 111222222211 1456777776655445543 443
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 544 f~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
+...+.++.|+.+++.+++...+..... ..+ .+.+..++..+. +|+..++...
T Consensus 200 r~~~i~f~~~~~~~~~~~L~~i~~~~~~---~i~-~~~l~~la~~s~----GdiR~~i~~L 252 (516)
T 1sxj_A 200 VCLDIQFRRPDANSIKSRLMTIAIREKF---KLD-PNVIDRLIQTTR----GDIRQVINLL 252 (516)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC---CCC-TTHHHHHHHHTT----TCHHHHHHHH
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcC----CcHHHHHHHH
Confidence 4568999999999999999877643222 111 123677777765 4666555443
No 145
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=3.7e-10 Score=126.35 Aligned_cols=176 Identities=22% Similarity=0.251 Sum_probs=109.2
Q ss_pred CccccccccccccccccceeeeccccchhhhhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC-----ceeeeccchhh
Q 002159 671 NVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL-----NFLSVKGPELI 745 (958)
Q Consensus 671 ~v~~~di~Gl~~vk~~l~e~i~~~l~~~~~~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~-----~~i~v~~~~l~ 745 (958)
+..|+++.|.+.+++.+...+ ..+- ..+++|+|||||||||+++++|+.+.. .++.++.++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i----------~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~- 87 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFV----------DEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD- 87 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHH----------HTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred CCcHHHhcCcHHHHHHHHHHH----------hcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence 345777888777666554332 1121 123999999999999999999998632 3455554432
Q ss_pred hccccchhhhHHHHHHHHHh------cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 746 NMYIGESEKNVRDIFQKARS------ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 746 ~~~~Gese~~vr~lf~~A~~------~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.| ...+++......+ ..+.|++|||+|.+.. ...+.|+..|+.. ..++.+|++
T Consensus 88 ---~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~---~~~~~~il~ 146 (340)
T 1sxj_C 88 ---RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-------------AAQNALRRVIERY---TKNTRFCVL 146 (340)
T ss_dssp ---CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT---TTTEEEEEE
T ss_pred ---cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhcC---CCCeEEEEE
Confidence 11 1233443333221 2368999999998852 2345666666654 245667778
Q ss_pred cCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHHHHhh--ccCCCCcCHHHHHhhCCCCCCHHHHHHHH
Q 002159 820 SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK--FKLLEDVSLYSIAKKCPPNFTGADMYALC 890 (958)
Q Consensus 820 TNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~--~~~~~d~~l~~la~~~t~g~sGaDi~~l~ 890 (958)
||.++.+.|++++ |+. .+.++. ++.++...+++...+. ..+.+ ..+..++.. +|+|++.+.
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~-l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~-----s~G~~r~~~ 209 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQP-LPQEAIERRIANVLVHEKLKLSP-NAEKALIEL-----SNGDMRRVL 209 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHH-----HTTCHHHHH
T ss_pred ecCccccchhHHh--hce-eEeccC-CCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH-----cCCCHHHHH
Confidence 8999999999999 987 567764 5666777777766643 33322 224445544 345555443
No 146
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.07 E-value=1.7e-09 Score=122.60 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=112.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cchhch-HHHHHHHHHHhh----cCCCeEEeecchhhhh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKT-SAALAQAFNTAQ----SYSPTILLLRDFDVFR 469 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-~~~g~~-e~~l~~~f~~A~----~~~P~IL~iDeid~L~ 469 (958)
.+.+++|+||||||||++++++|..++.+++.++|..+.. .+.+.. ...+...+..+. ...++++||||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 4567999999999999999999999999999999987652 333332 344555555432 2367999999999987
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCc-hhhhhhhhcCcEEEEEecCC----------------
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFP-VKEIEKICRQQVLLVAAADS---------------- 532 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~-~~~~~~~~~~~ViVIaaTn~---------------- 532 (958)
..+.......+. ....+...|.++++.... .....++... ..........++++|+++|.
T Consensus 151 ~~~~~~~~~~~~--~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~ 227 (376)
T 1um8_A 151 RLSENRSITRDV--SGEGVQQALLKIVEGSLV-NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVL 227 (376)
T ss_dssp ---------------CHHHHHHHHHHHHCCEE-C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCC
T ss_pred hhcCCCceeccc--chHHHHHHHHHHhhccce-ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhccccc
Confidence 642111100111 111233333333221000 0000000000 00001122356778888762
Q ss_pred -------------------------CCCCChhhhccccEEEEcCCCCHHHHHHHHHH----hccCC------cccCCCCC
Q 002159 533 -------------------------SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ----LLQPV------SELTSDTG 577 (958)
Q Consensus 533 -------------------------~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~----ll~~~------~~l~~D~~ 577 (958)
...+.+++++|+...+.++++++++...|+.. ++... .......
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (376)
T 1um8_A 228 GFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIF- 306 (376)
T ss_dssp SCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEE-
T ss_pred CCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEE-
Confidence 12367888889988899999999999988862 11100 0000011
Q ss_pred cHHHHHHHhhhcC--CCChhhHHHHHHHHHHHHHH
Q 002159 578 SEEFVKDIIGQTS--GFMPRDLHALVADAGANLIR 610 (958)
Q Consensus 578 ~~~~L~~la~~t~--Gfv~~DL~~Lv~eA~~~a~~ 610 (958)
.++.++.++.... ....+.+..++..+...++.
T Consensus 307 ~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 307 EEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp CHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 1334555555532 24567888877777666554
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.06 E-value=4.7e-11 Score=116.74 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS 786 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~ 786 (958)
.+.+++|+||||||||++|++++.... +|+.+++.++...+ ...+|..+. .++|||||+|.+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~----- 89 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSR----- 89 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCH-----
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCH-----
Confidence 356799999999999999999999888 99999988775443 455666553 56999999998852
Q ss_pred CCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 787 GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 787 ~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
.....|+..|+... ..++.+|+|||++
T Consensus 90 --------~~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 90 --------NIQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp --------HHHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred --------HHHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 23344555554321 3467888899875
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=3.2e-09 Score=119.62 Aligned_cols=178 Identities=17% Similarity=0.283 Sum_probs=108.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCccccc----------------chhc-hHHHHHHHHHH
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL------GIHVVEYSCHNLMAS----------------SERK-TSAALAQAFNT 451 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l------g~~~~~I~~~~l~s~----------------~~g~-~e~~l~~~f~~ 451 (958)
..+..++|+||+|+||||+++.+++.+ +..++.++|...... ..+. ....+..+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKA 122 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 345579999999999999999999998 888999998642210 0111 12223444444
Q ss_pred hhcC-CCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEec
Q 002159 452 AQSY-SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (958)
Q Consensus 452 A~~~-~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaT 530 (958)
.... .|.+++|||++.+.... + ...+..+++.+.. ....++.+|++|
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~-------~----~~~l~~l~~~~~~---------------------~~~~~~~~I~~~ 170 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKY-------N----DDILYKLSRINSE---------------------VNKSKISFIGIT 170 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSS-------C----STHHHHHHHHHHS---------------------CCC--EEEEEEE
T ss_pred HhccCCeEEEEEcChhhhhccC-------c----CHHHHHHhhchhh---------------------cCCCeEEEEEEE
Confidence 4333 38999999999987521 0 1122223222210 014578889999
Q ss_pred CCC---CCCChhhhcccc-EEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC---CCChhhHHHHHHH
Q 002159 531 DSS---EGLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS---GFMPRDLHALVAD 603 (958)
Q Consensus 531 n~~---~~Ld~alrrrf~-~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~---Gfv~~DL~~Lv~e 603 (958)
+.+ ..+++.+++||. +.+.+++++.++..++++..+..... ...-....++.++..+. |. ++.+..++..
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~-~r~~~~ll~~ 247 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGD-ARRALDLLRV 247 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCC-HHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 876 467778888765 58999999999999999986642110 01112334555555554 53 3333445555
Q ss_pred HHHH
Q 002159 604 AGAN 607 (958)
Q Consensus 604 A~~~ 607 (958)
+...
T Consensus 248 a~~~ 251 (386)
T 2qby_A 248 SGEI 251 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 149
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.04 E-value=2.5e-09 Score=120.91 Aligned_cols=157 Identities=13% Similarity=0.220 Sum_probs=104.9
Q ss_pred CcCCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEecCccc-c
Q 002159 368 FVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL-----------GIHVVEYSCHNLM-A 435 (958)
Q Consensus 368 ~~~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~l-----------g~~~~~I~~~~l~-s 435 (958)
..+.. +..+.+...+...+.. ..+.+++|+||||+|||++++++++++ +..++.++|.... .
T Consensus 22 l~gr~-~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 22 IPFRE-DILRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp CTTCH-HHHHHHHHHHHHHHTT-----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCChH-HHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 33443 3445555555443332 334579999999999999999999998 8999999986543 1
Q ss_pred cc-----------------hhc-hHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcC
Q 002159 436 SS-----------------ERK-TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497 (958)
Q Consensus 436 ~~-----------------~g~-~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~ 497 (958)
.. .+. ....+..++...... +.+++|||+|.+.... .... ++..+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~-----------~~~~---~l~~l~~ 160 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR-----------GGDI---VLYQLLR 160 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST-----------TSHH---HHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC-----------CCce---eHHHHhc
Confidence 00 011 122344444444433 3499999999987511 0111 1222221
Q ss_pred CCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC---CCCChhhhccccEEEEcCCCCHHHHHHHHHHhcc
Q 002159 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (958)
Q Consensus 498 ~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~---~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~ 567 (958)
. ..++.+|++||.. ..+++.+++||...+.+++|+.++..+|++..+.
T Consensus 161 ~----------------------~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 161 S----------------------DANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp S----------------------SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred C----------------------CcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 0 1678999999887 6789999999877999999999999999998775
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.03 E-value=1.8e-09 Score=120.70 Aligned_cols=145 Identities=16% Similarity=0.224 Sum_probs=99.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee----------------ccchhhhccc-----cchhhhHHHHHHHHHh-
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV----------------KGPELINMYI-----GESEKNVRDIFQKARS- 765 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v----------------~~~~l~~~~~-----Gese~~vr~lf~~A~~- 765 (958)
+..+||+||+|+|||++|+++|..+......- ..+++..... .-+-..+|++++.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 45699999999999999999999875322100 0011111111 0122357777777653
Q ss_pred ---cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeec
Q 002159 766 ---ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 842 (958)
Q Consensus 766 ---~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v 842 (958)
..+.|++|||+|.+. ....+.|++.|+.. ..++++|++||.++.+.|++++ |+. .+.+
T Consensus 104 ~~~~~~kvviIdead~l~-------------~~a~naLLk~lEep---~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~ 164 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLT-------------DAAANALLKTLEEP---PAETWFFLATREPERLLATLRS--RCR-LHYL 164 (334)
T ss_dssp CTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTSC---CTTEEEEEEESCGGGSCHHHHT--TSE-EEEC
T ss_pred cccCCcEEEEECchhhcC-------------HHHHHHHHHHhcCC---CCCeEEEEEeCChHhCcHHHhh--cce-eeeC
Confidence 346899999999985 23567888888753 4578888889999999999999 985 6888
Q ss_pred cCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhh
Q 002159 843 GVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKK 876 (958)
Q Consensus 843 ~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~ 876 (958)
+. ++.++...+++... .+ .+..+..+++.
T Consensus 165 ~~-~~~~~~~~~L~~~~---~~-~~~~~~~l~~~ 193 (334)
T 1a5t_A 165 AP-PPEQYAVTWLSREV---TM-SQDALLAALRL 193 (334)
T ss_dssp CC-CCHHHHHHHHHHHC---CC-CHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhc---CC-CHHHHHHHHHH
Confidence 84 78887777777654 22 23345667766
No 151
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.02 E-value=2.4e-09 Score=119.65 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=37.9
Q ss_pred cCcEEEEEecCCCC-CCChhhhccccEEEEcCCC-CHHHHHHHHHHh
Q 002159 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPL-TEQQRVEMLSQL 565 (958)
Q Consensus 521 ~~~ViVIaaTn~~~-~Ld~alrrrf~~eIsig~P-de~qR~~Il~~l 565 (958)
..++++|+|||... .+++++++||...+.++.| +.++|.+|++..
T Consensus 185 ~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 185 PARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp ECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 34799999999744 8999999999888999999 678888888764
No 152
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.02 E-value=9.3e-11 Score=138.93 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=41.1
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc-CC----CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT-SG----FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t-~G----fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||++|+++++.+++.+.+|+.. ..++.++.++. .| ++.||+..+..
T Consensus 132 ~~~~~~~LSgG---e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 132 WNKDANILSGG---GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp TTSBGGGCCHH---HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred hcCChhhCCHH---HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 45566789999 999999999999999888666543 22333333221 24 88999986643
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.00 E-value=1e-08 Score=115.85 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=108.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccc----------------hhchH-HHHHHHHHHhh-cCC
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASS----------------ERKTS-AALAQAFNTAQ-SYS 456 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l----g~~~~~I~~~~l~s~~----------------~g~~e-~~l~~~f~~A~-~~~ 456 (958)
.++|+||||+||||+++++++.+ +..++.++|....... .+... ..+..+..... ...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 69999999999999999999998 5678999986543210 01111 11222222222 235
Q ss_pred CeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC---
Q 002159 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS--- 533 (958)
Q Consensus 457 P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~--- 533 (958)
|.+++|||++.+.. .....|.++.... ......++.+|++||.+
T Consensus 126 ~~vlilDE~~~l~~----------------~~~~~L~~~~~~~-----------------~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 126 YMFLVLDDAFNLAP----------------DILSTFIRLGQEA-----------------DKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp CEEEEEETGGGSCH----------------HHHHHHHHHTTCH-----------------HHHSSCCEEEEEEESSTHHH
T ss_pred eEEEEEECccccch----------------HHHHHHHHHHHhC-----------------CCCCcCCEEEEEEECCchHH
Confidence 88999999997721 1222232332210 00001578899999887
Q ss_pred CCCChhhhccccE-EEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC--------ChhhHHHHHHHH
Q 002159 534 EGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF--------MPRDLHALVADA 604 (958)
Q Consensus 534 ~~Ld~alrrrf~~-eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf--------v~~DL~~Lv~eA 604 (958)
..+++.+++||.. .+.+++++.++..++++..+.... ....-....++.++..+.+. ..+.+..++..+
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 6788888888764 899999999999999988764311 00112245567777777422 334455555555
Q ss_pred HHHH
Q 002159 605 GANL 608 (958)
Q Consensus 605 ~~~a 608 (958)
...+
T Consensus 251 ~~~a 254 (389)
T 1fnn_A 251 AYAA 254 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.98 E-value=6e-09 Score=118.87 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=110.8
Q ss_pred CCcEEE--ecCCCChhHHHHHHHHHHc---------CCceeeeccchh------hhcc---c-------cchhhh-HHHH
Q 002159 708 RSGVLL--YGPPGTGKTLLAKAVATEC---------SLNFLSVKGPEL------INMY---I-------GESEKN-VRDI 759 (958)
Q Consensus 708 ~~~iLL--~GppGtGKTtLakaiA~~~---------~~~~i~v~~~~l------~~~~---~-------Gese~~-vr~l 759 (958)
+..+++ +||+|+|||+|+++++..+ +..++.+++... +... + |.+... ...+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457889 9999999999999999876 345666664321 1110 1 111111 2222
Q ss_pred HHHHH-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCC--CcEEEEEecCCCC---CCC---hhh
Q 002159 760 FQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS--QDLFIIGASNRPD---LID---PAL 830 (958)
Q Consensus 760 f~~A~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~--~~v~VI~aTNrp~---~ld---paL 830 (958)
.+... ...|.||+|||+|.+...+.. ....+..++..++...... .++.+|++||.++ .++ +.+
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~ 202 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQV 202 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHH
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchh
Confidence 22222 356889999999999743210 1245555555555432112 5788998998776 344 666
Q ss_pred cCcCCccceeeccCCCCHHHHHHHHHHHHhhcc---CCCCcCHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHH
Q 002159 831 LRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK---LLEDVSLYSIAKKCPP------NFTGADMYALCADAWFHAAK 899 (958)
Q Consensus 831 lrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~---~~~d~~l~~la~~~t~------g~sGaDi~~l~~~A~~~A~~ 899 (958)
.+ ||...+.++ |.+.++..+|++...+... ...+..+..+++.+ . | ....+..+|+.|+..|..
T Consensus 203 ~~--~~~~~i~l~-~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 203 ES--QIGFKLHLP-AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HT--TCSEEEECC-CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred hh--hcCCeeeeC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 66 676668888 4788888888877665321 11223356677774 4 3 456778888887766643
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=4.8e-09 Score=117.22 Aligned_cols=146 Identities=12% Similarity=0.194 Sum_probs=97.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecCcccccchhchHHHHHHHHHHhh----------------cCC
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG------IHVVEYSCHNLMASSERKTSAALAQAFNTAQ----------------SYS 456 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg------~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~----------------~~~ 456 (958)
+++|+||||+||||+++++++.++ ..+..+++.+..+ ...+++.+.... ...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999864 4688888876321 122222221111 124
Q ss_pred CeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCC
Q 002159 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL 536 (958)
Q Consensus 457 P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~L 536 (958)
+.++++||+|.+... ....+...+++. ...+.+|.+||.+..+
T Consensus 134 ~~vliiDE~~~l~~~------------~~~~Ll~~le~~-------------------------~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 134 YKIIILDEADSMTAD------------AQSALRRTMETY-------------------------SGVTRFCLICNYVTRI 176 (353)
T ss_dssp CEEEEETTGGGSCHH------------HHHHHHHHHHHT-------------------------TTTEEEEEEESCGGGS
T ss_pred ceEEEEECCCccCHH------------HHHHHHHHHHhc-------------------------CCCceEEEEeCchhhC
Confidence 569999999987541 112223222221 2346677788999999
Q ss_pred ChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC
Q 002159 537 PPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (958)
Q Consensus 537 d~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf 592 (958)
.+.+++|+. .+.++.|+.++...+++..+..... ..+ +..++.++..+.|.
T Consensus 177 ~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~i~-~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 177 IDPLASQCS-KFRFKALDASNAIDRLRFISEQENV---KCD-DGVLERILDISAGD 227 (353)
T ss_dssp CHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTC---CCC-HHHHHHHHHHTSSC
T ss_pred cchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCC---CCC-HHHHHHHHHHcCCC
Confidence 999999985 8999999999999999887754332 122 44567777777653
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=5e-09 Score=115.32 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=99.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHhh-------cCCCeEEeecchhh
Q 002159 400 VLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQ-------SYSPTILLLRDFDV 467 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~-------~~~P~IL~iDeid~ 467 (958)
++|+||+|+|||++++++++.+ +..++++++.+.. ....++..+.... ...+.+++|||+|.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECccc
Confidence 9999999999999999999986 3457888876522 1334444444332 22378999999998
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEE
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~e 547 (958)
+... ....+...+++ ....+.+|.+||.+..+.+.+++|+. .
T Consensus 119 l~~~------------~~~~L~~~le~-------------------------~~~~~~~il~~~~~~~l~~~l~sr~~-~ 160 (323)
T 1sxj_B 119 MTAG------------AQQALRRTMEL-------------------------YSNSTRFAFACNQSNKIIEPLQSQCA-I 160 (323)
T ss_dssp SCHH------------HHHTTHHHHHH-------------------------TTTTEEEEEEESCGGGSCHHHHTTSE-E
T ss_pred CCHH------------HHHHHHHHHhc-------------------------cCCCceEEEEeCChhhchhHHHhhce-E
Confidence 7541 01112222211 13567888888999999999999874 8
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCC
Q 002159 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gf 592 (958)
+.++.|+.++..++++..+..... ..+ ...++.++..+.|.
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDV---KYT-NDGLEAIIFTAEGD 201 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CBC-HHHHHHHHHHHTTC
T ss_pred EeecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCCC
Confidence 999999999999999887653222 122 34466777777653
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.93 E-value=3.2e-09 Score=116.61 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=99.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccchhchHHHHHHHHHHh-h-cCCCeEEeecchhhhhhc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTA-Q-SYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A-~-~~~P~IL~iDeid~L~~~ 471 (958)
+++|+||+|+|||++++++++.+ +..++.+++.+..+. ......+....... . ...+.+++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~- 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA- 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-
Confidence 39999999999999999999987 345788888764321 11111222221111 1 13578999999998754
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcC
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig 551 (958)
.....|.++++. ....+.+|++||.+..+.+.+++|+. .+.+.
T Consensus 117 ---------------~~~~~L~~~le~---------------------~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~ 159 (319)
T 2chq_A 117 ---------------DAQAALRRTMEM---------------------YSKSCRFILSCNYVSRIIEPIQSRCA-VFRFK 159 (319)
T ss_dssp ---------------HHHHTTGGGTSS---------------------SSSSEEEEEEESCGGGSCHHHHTTCE-EEECC
T ss_pred ---------------HHHHHHHHHHHh---------------------cCCCCeEEEEeCChhhcchHHHhhCe-EEEec
Confidence 111112222221 14568899999999999999999974 89999
Q ss_pred CCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 552 ~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
.|+.+++..++...+..... ..+ ...++.++..+.|
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~---~i~-~~~l~~l~~~~~G 195 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGV---KIT-EDGLEALIYISGG 195 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCC---CBC-HHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 99999999999988765432 222 3456677766554
No 158
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.88 E-value=3.2e-09 Score=124.44 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=78.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-----cccccchhchHHHHHHHHHHhhcC---CCeEEeecchhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCH-----NLMASSERKTSAALAQAFNTAQSY---SPTILLLRDFDV 467 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~--~~~~I~~~-----~l~s~~~g~~e~~l~~~f~~A~~~---~P~IL~iDeid~ 467 (958)
.+|||+||||||||++|+++|+.++. .+..++|. ++++...+..... ...|..+... .++|+|||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh
Confidence 46999999999999999999998853 45555553 2222111111101 1122222211 467999999986
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC---CCChhhhccc
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCF 544 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~---~Ld~alrrrf 544 (958)
+.+. ... .++..+.+... ..+|.. .....+ ++|+|||... .+.+++.+||
T Consensus 121 ~~~~------------~q~---~LL~~lee~~v-----~i~G~~------~~~~~~-~iI~ATN~lpe~~~~~~aLldRF 173 (500)
T 3nbx_X 121 AGPA------------ILN---TLLTAINERQF-----RNGAHV------EKIPMR-LLVAASNELPEADSSLEALYDRM 173 (500)
T ss_dssp CCHH------------HHH---HHHHHHHSSEE-----ECSSSE------EECCCC-EEEEEESSCCCTTCTTHHHHTTC
T ss_pred hcHH------------HHH---HHHHHHHHHhc-----cCCCCc------CCcchh-hhhhccccCCCccccHHHHHHHH
Confidence 5431 112 22222221100 001110 111233 4677777532 2445899999
Q ss_pred cEEEEcCCCCH-HHHHHHHHHhc
Q 002159 545 SHEISMGPLTE-QQRVEMLSQLL 566 (958)
Q Consensus 545 ~~eIsig~Pde-~qR~~Il~~ll 566 (958)
...+.++.|++ ++|.+|++...
T Consensus 174 ~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 174 LIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhhhhHHHHHhccc
Confidence 99999999997 67889988654
No 159
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=9.4e-09 Score=113.30 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=92.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc------CCceeeeccchhhhccccchhhhHHHHHHHHHhc----CCcEEEEcccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELD 777 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~------~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~----~P~ILfiDEiD 777 (958)
...++||||||+|||++|+++|..+ ..+++.+++.. .. .+-..+|++.+.+... ...|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4579999999999999999999874 34666665431 01 1234578888888643 24699999999
Q ss_pred cccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccCCCCHHHHHHHHHH
Q 002159 778 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 857 (958)
Q Consensus 778 ~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ppd~~~r~~Il~~ 857 (958)
.+. ....+.||+.|+.. ..++++|.+||.|+.|.|++++ | .+.++. ++.++...+++.
T Consensus 93 ~lt-------------~~a~naLLk~LEep---~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~-l~~~~i~~~L~~ 150 (305)
T 2gno_A 93 RMT-------------QQAANAFLKALEEP---PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVV-NVPKEFRDLVKE 150 (305)
T ss_dssp GBC-------------HHHHHHTHHHHHSC---CTTEEEEEEESCGGGSCHHHHT--T---SEEEEC-CCCHHHHHHHHH
T ss_pred HhC-------------HHHHHHHHHHHhCC---CCCeEEEEEECChHhChHHHHc--e---eEeCCC-CCHHHHHHHHHH
Confidence 985 23467899988854 3567777778889999999999 8 888885 556666666665
Q ss_pred HH
Q 002159 858 LT 859 (958)
Q Consensus 858 ~~ 859 (958)
..
T Consensus 151 ~~ 152 (305)
T 2gno_A 151 KI 152 (305)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.87 E-value=2e-08 Score=112.98 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=103.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCcccccchhchHHHHHHHHHHh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTA 452 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~~A 452 (958)
+..++|+||+|+||||+++++|+.++.. ++.++... ......++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 111 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNV 111 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHH
Confidence 3468999999999999999999998642 23333221 01122345555554
Q ss_pred hc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEE
Q 002159 453 QS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (958)
Q Consensus 453 ~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (958)
.. ..+.+++|||+|.+.. .....+++.+.+ ....+++|+
T Consensus 112 ~~~~~~~~~~vliiDe~~~l~~---------------~~~~~Ll~~le~----------------------~~~~~~~Il 154 (373)
T 1jr3_A 112 QYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEE----------------------PPEHVKFLL 154 (373)
T ss_dssp TSCCSSSSSEEEEEECGGGSCH---------------HHHHHHHHHHHS----------------------CCSSEEEEE
T ss_pred hhccccCCeEEEEEECcchhcH---------------HHHHHHHHHHhc----------------------CCCceEEEE
Confidence 42 2468999999997743 112222222211 146788898
Q ss_pred ecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002159 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (958)
Q Consensus 529 aTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA 604 (958)
+|+.+..+.+.+++|+ ..+.++.|+.++..++++..+..... ..+ .+.++.++..+.| ..+++..++..+
T Consensus 155 ~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~-~~a~~~l~~~~~G-~~r~~~~~l~~~ 224 (373)
T 1jr3_A 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI---AHE-PRALQLLARAAEG-SLRDALSLTDQA 224 (373)
T ss_dssp EESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC---CBC-HHHHHHHHHHSSS-CHHHHHHHHHHH
T ss_pred EeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 9988889999999886 78999999999999999887754322 122 3446777777766 344555554443
No 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=9.3e-10 Score=136.98 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=48.2
Q ss_pred CCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCC-------CcHHHHHHHhhhcCC----CChhhHHHHHH
Q 002159 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-------GSEEFVKDIIGQTSG----FMPRDLHALVA 602 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~-------~~~~~L~~la~~t~G----fv~~DL~~Lv~ 602 (958)
+++....++...++|+| ++||+.|++.++.+++.+.+|+ ....++.++... .| ++.||+..+..
T Consensus 536 gL~~~~~~~~~~~LSGG---qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGG---WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDN 610 (986)
T ss_dssp TCCHHHHHSBGGGCCHH---HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHH
T ss_pred CCChhhhcCCcccCCHH---HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHH
Confidence 44444556666889999 9999999999999988875554 345677777766 45 88999887654
No 162
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.9e-10 Score=132.54 Aligned_cols=60 Identities=22% Similarity=0.129 Sum_probs=41.3
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HHHHHHHhhhc--CC----CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EEFVKDIIGQT--SG----FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~~L~~la~~t--~G----fv~~DL~~Lv~ 602 (958)
...+...++|+| ++||++|++.++.+++.+.+|+.. ...+.++.+.. .| ++.||+..+..
T Consensus 214 ~~~~~~~~LSgG---e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 214 VLKRDIEKLSGG---ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp GGGSCTTTCCHH---HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred hhCCChHHCCHH---HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 345666789999 999999999999998887655443 22233332221 23 88999987753
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=2e-08 Score=110.61 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=96.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCcccccchhchHHHHHHHHHHh--hcCCCeEEeecchhhhhhc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFNTA--QSYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg-----~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A--~~~~P~IL~iDeid~L~~~ 471 (958)
+++|+||+|+|||++++++++.+. ..++.+++.+..+. ......+....... ....+.++++||+|.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 125 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 125 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH
Confidence 499999999999999999999873 34788887653210 11111122111110 0135789999999987541
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcC
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMG 551 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig 551 (958)
....+...+++ ....+.+|++||.+..+.+.+++|+. .+.++
T Consensus 126 ------------~~~~L~~~le~-------------------------~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~ 167 (327)
T 1iqp_A 126 ------------AQQALRRTMEM-------------------------FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFR 167 (327)
T ss_dssp ------------HHHHHHHHHHH-------------------------TTTTEEEEEEESCGGGSCHHHHHTEE-EEECC
T ss_pred ------------HHHHHHHHHHh-------------------------cCCCCeEEEEeCCccccCHHHHhhCc-EEEec
Confidence 11222222221 13567888899999999999998875 78999
Q ss_pred CCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 552 ~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
+|+.++...+++..+..... ..+ ...++.++..+.|
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~---~~~-~~~~~~l~~~~~g 203 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGL---ELT-EEGLQAILYIAEG 203 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTC---EEC-HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHHCCC
Confidence 99999999999887754332 122 3446667776655
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.3e-08 Score=113.98 Aligned_cols=147 Identities=13% Similarity=0.237 Sum_probs=92.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCc----------------------------EEEEecCcccccchhchHHHHHHHHH
Q 002159 400 VLLHGLPGCGKRTVVRYVARRL-GIH----------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~l-g~~----------------------------~~~I~~~~l~s~~~g~~e~~l~~~f~ 450 (958)
++|+||||+||||+++++|+++ +.. ++.++..+. .......++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM----GNNDRIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc----CCcchHHHHHHHH
Confidence 9999999999999999999965 221 222222110 0011112444444
Q ss_pred Hhh--------------cCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhh
Q 002159 451 TAQ--------------SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEI 516 (958)
Q Consensus 451 ~A~--------------~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~ 516 (958)
.+. ...|.++++||++.+.. .....+.+.+++.
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------------~~~~~L~~~le~~--------------------- 161 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------------DAQAALRRTMEKY--------------------- 161 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSSCH------------HHHHHHHHHHHHS---------------------
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccccCH------------HHHHHHHHHHHhh---------------------
Confidence 332 12567999999987533 0122333333221
Q ss_pred hhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCC
Q 002159 517 EKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (958)
Q Consensus 517 ~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~G 591 (958)
...+.+|.+||.+..+.+.+++|+ ..+.++.|+.+++.++++..+..... ..+..+.++.++..+.|
T Consensus 162 ----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 162 ----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNG 228 (354)
T ss_dssp ----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTT
T ss_pred ----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCC
Confidence 345778888899999999999988 78999999999999999987754322 11102346677776655
No 165
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.84 E-value=1e-07 Score=106.46 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=99.5
Q ss_pred CCchHHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cE
Q 002159 370 PLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HV 425 (958)
Q Consensus 370 ~l~~~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~------------------------~~ 425 (958)
+...+..+.+...+.- -+.+..+||+||+|+|||++++++|+.+.. ++
T Consensus 5 pw~~~~~~~l~~~i~~--------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA--------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGGHHHHHHHHHHHHT--------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHHHHHc--------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3444555555554421 133456999999999999999999998853 23
Q ss_pred EEEecCcccccchhchHHHHHHHHHHhhc----CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCC
Q 002159 426 VEYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAE 501 (958)
Q Consensus 426 ~~I~~~~l~s~~~g~~e~~l~~~f~~A~~----~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~ 501 (958)
..++..+ .........++.+++.+.. ....|++|||+|.+.. .....+++.+.+.
T Consensus 77 ~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEep--- 135 (334)
T 1a5t_A 77 YTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEEP--- 135 (334)
T ss_dssp EEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTSC---
T ss_pred EEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcCC---
Confidence 4443321 0012234556777776652 2368999999998754 1123344333221
Q ss_pred ccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEEEcCCCCHHHHHHHHHHhc
Q 002159 502 DEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 502 ~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll 566 (958)
...+++|.+|+.+..+.+.+++|. ..+.++.|++++..++++...
T Consensus 136 -------------------~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 136 -------------------PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp -------------------CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC
T ss_pred -------------------CCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc
Confidence 456888889999999999999986 579999999999999888764
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.83 E-value=1.7e-08 Score=137.71 Aligned_cols=141 Identities=15% Similarity=0.227 Sum_probs=92.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~ 477 (958)
.+..+.||+|||||.+++.+|..+|.+++.++|++ +-....+..+|.-+.. ..+..++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~------~~d~~~~g~i~~G~~~-~GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDE------GFDLQAMSRIFVGLCQ-CGAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSS------CCCHHHHHHHHHHHHH-HTCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCC------CCCHHHHHHHHhhHhh-cCcEEEehhhhcCCH-------
Confidence 34789999999999999999999999999999987 4444566777776653 578889999987643
Q ss_pred CCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCC----CCCCChhhhccccEEEEcCCC
Q 002159 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS----SEGLPPTIRRCFSHEISMGPL 553 (958)
Q Consensus 478 ~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~----~~~Ld~alrrrf~~eIsig~P 553 (958)
...+.+...+..+...+.... .-................+++|.|. ...||++++.+| +.+.+..|
T Consensus 671 -----~vLSvv~~qi~~I~~a~~~~~----~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~P 740 (3245)
T 3vkg_A 671 -----RILSAVSQQIQTIQVALKENS----KEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKP 740 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTC----SEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSC
T ss_pred -----HHHHHHHHHHHHHHHHHHcCC----CeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCC
Confidence 122222222221110000000 0000000011223567788888883 358999999998 66999999
Q ss_pred CHHHHHHHH
Q 002159 554 TEQQRVEML 562 (958)
Q Consensus 554 de~qR~~Il 562 (958)
|.+.-.+|.
T Consensus 741 d~~~i~ei~ 749 (3245)
T 3vkg_A 741 DREMIAQVM 749 (3245)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998877775
No 167
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.81 E-value=1.3e-09 Score=129.43 Aligned_cols=58 Identities=22% Similarity=0.203 Sum_probs=42.3
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||++|++.++.+++.+.+|+.. ..++.++.+. .+ ++.||+..+..
T Consensus 152 ~~~~~~~LSgG---ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 152 LEREIQHLSGG---ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDY 223 (538)
T ss_dssp TTSBGGGCCHH---HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH
T ss_pred hhCChhhCCHH---HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 45566889999 999999999999999888655543 2355555442 22 88999887643
No 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.80 E-value=1.3e-09 Score=130.96 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=42.2
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-----------HHHHHHHhhhcCC---CChhhHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALV 601 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-----------~~~L~~la~~t~G---fv~~DL~~Lv 601 (958)
+..+...++|+| ++||++|++.++.+++.+.+|+.. ..++.++.+. .. ++.||+..+.
T Consensus 221 ~~~~~~~~LSGG---ekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 221 VLDRELHQLSGG---ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLD 292 (607)
T ss_dssp GGGSBGGGCCHH---HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred hhCCChhhCCHH---HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHH
Confidence 345666889999 999999999999999888666543 2345555432 22 8899988654
No 169
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.79 E-value=5.7e-09 Score=125.31 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=85.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecCcccccchhchH-H---HHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY----SCHNLMASSERKTS-A---ALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I----~~~~l~s~~~g~~e-~---~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
.+|||+||||||||++|+++|+.++...+.. ++.++.+....... + .-...+..| ..+++||||+|.+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~ 404 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR 404 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCC
Confidence 4799999999999999999999987655442 22333222111100 0 000112223 34899999999775
Q ss_pred hcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-------------CC
Q 002159 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-------------GL 536 (958)
Q Consensus 470 ~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-------------~L 536 (958)
+. ....|.+.+++-... -...| .......++.||||||... .+
T Consensus 405 ~~----------------~q~~Ll~~le~~~i~--i~~~g------~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l 460 (595)
T 3f9v_A 405 DE----------------DRVAIHEAMEQQTVS--IAKAG------IVAKLNARAAVIAAGNPKFGRYISERPVSDNINL 460 (595)
T ss_dssp SH----------------HHHHHHHHHHSSSEE--EESSS------SEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCS
T ss_pred Hh----------------HhhhhHHHHhCCEEE--EecCC------cEEEecCceEEEEEcCCcCCccCcccCchhccCC
Confidence 41 112222222210000 00001 0112256789999999876 88
Q ss_pred Chhhhcccc-EEEEcCCCCHHHHHHHHHHhccC
Q 002159 537 PPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 537 d~alrrrf~-~eIsig~Pde~qR~~Il~~ll~~ 568 (958)
++++++||+ ..+..+.|+++ ...|++..+..
T Consensus 461 ~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 461 PPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 999999995 56777888888 88888887754
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.77 E-value=6.5e-09 Score=105.10 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHc----CCceeeeccchhhhccccchhh-hHHHHHHHHHhcCCcEEEEccccc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDS 778 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~----~~~~i~v~~~~l~~~~~Gese~-~vr~lf~~A~~~~P~ILfiDEiD~ 778 (958)
.+.++.+++|+||||||||||++++++.+ +..++.++..++...+...... ....+++.. ..|.+|+|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 44567899999999999999999999987 5667777777766543321111 111222222 3678999999975
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC
Q 002159 779 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 824 (958)
Q Consensus 779 l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~ 824 (958)
... .......+..++..... .+..+|.|||.+.
T Consensus 112 ~~~--------~~~~~~~l~~ll~~~~~-----~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 112 ERL--------SDWQRELISYIITYRYN-----NLKSTIITTNYSL 144 (180)
T ss_dssp SCC--------CHHHHHHHHHHHHHHHH-----TTCEEEEECCCCS
T ss_pred CcC--------CHHHHHHHHHHHHHHHH-----cCCCEEEEcCCCh
Confidence 421 12234455555554421 2345666888764
No 171
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.76 E-value=2.7e-08 Score=106.92 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=81.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccccch-----hchHHH-------HHHHHHHhhcCCCeEEee
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSE-----RKTSAA-------LAQAFNTAQSYSPTILLL 462 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg---~~~~~I~~~~l~s~~~-----g~~e~~-------l~~~f~~A~~~~P~IL~i 462 (958)
.+|+|+||||||||+++++++..++ .+++.++|..+..... |...+. ....+..+ ...++||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~l 106 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFL 106 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEE
Confidence 4699999999999999999999875 5799999987532110 000000 00112222 3579999
Q ss_pred cchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-------CC
Q 002159 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------EG 535 (958)
Q Consensus 463 Deid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-------~~ 535 (958)
||++.+... ....+..+++.-. + ...++ ......++.+|+|||.. ..
T Consensus 107 DEi~~l~~~------------~q~~Ll~~l~~~~--~-----~~~g~-------~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 107 DELATAPMM------------VQEKLLRVIEYGE--L-----ERVGG-------SQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp ESGGGSCHH------------HHHHHHHHHHHCE--E-----CCCCC---------CEECCCEEEEEESSCHHHHHHHTS
T ss_pred echHhcCHH------------HHHHHHHHHHhCC--e-----ecCCC-------cccccCCeEEEEecCcCHHHHHHcCC
Confidence 999987641 1222333332210 0 00000 01124567899999875 24
Q ss_pred CChhhhcccc-EEEEcCCCCH--HHHHHHHHHhc
Q 002159 536 LPPTIRRCFS-HEISMGPLTE--QQRVEMLSQLL 566 (958)
Q Consensus 536 Ld~alrrrf~-~eIsig~Pde--~qR~~Il~~ll 566 (958)
+.+++.+||. ..+.+++.++ ++...+++.++
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 7788888874 5677776654 34445555444
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=8.8e-09 Score=101.43 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEcccccccCCC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 783 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r 783 (958)
++..++|+||+|+|||+|++++++.+ +..++.+++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 57789999999999999999999987 666777777666433 11235789999999876421
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecC-CCCCCC--hhhcCcCCccceeeccC
Q 002159 784 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN-RPDLID--PALLRPGRFDKLLYVGV 844 (958)
Q Consensus 784 ~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTN-rp~~ld--paLlrpgRfd~~I~v~~ 844 (958)
..+.+-.++..+.. ....++|| ||| .|+.+. +.|.. ||..-+.+.+
T Consensus 99 ---------~~~~l~~li~~~~~---~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 99 ---------EQALLFSIFNRFRN---SGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp ---------HHHHHHHHHHHHHH---HTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred ---------HHHHHHHHHHHHHH---cCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 12334444444321 11223444 666 455443 77777 8876666654
No 173
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.73 E-value=4.7e-09 Score=115.18 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=78.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCc--eeeeccchhhhccccchhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~--~i~v~~~~l~~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
.|+.++..++|+||||||||+||.++|.+.+.. |+.....+.++.+..+.+..+..+++...... +||||+++.+.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~ 195 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence 356667778999999999999999999875544 55553344445454455666666777666654 99999999997
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhh
Q 002159 781 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPAL 830 (958)
Q Consensus 781 ~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaL 830 (958)
......+.. +...+.+.+++.+|+++.. ..++.+|++|| |...|+++
T Consensus 196 ~~~~~~s~~-G~v~~~lrqlL~~L~~~~k-~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGNTTS-GGISRGAFDLLSDIGAMAA-SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHH-HHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccc-chHHHHHHHHHHHHHHHHh-hCCCEEEEEeC-CcccchhH
Confidence 544321111 1123456666666665432 23567888888 66677664
No 174
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.72 E-value=7.4e-09 Score=101.00 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=49.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
.+|+|+||||||||++|++++...+ .++.++|.++.... ....++.+. ..++||||+|.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~ 89 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSR 89 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCH
Confidence 4599999999999999999999887 89999998654322 345555554 57999999998764
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.71 E-value=2.5e-08 Score=97.39 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=49.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
+.+|+|+||||||||++|++++... +..++ ++|..+... ......|+.+. .+++||||+|.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCH
Confidence 3459999999999999999999886 66788 999876543 22334455553 47999999998864
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.70 E-value=1.4e-08 Score=114.82 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=83.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh-hccccchhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~-~~~~Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
..+++++..++|+||||+|||||++++++..+..++.+..++-. ..+ +..+ ....++|+||++.+.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~-------lg~~------~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFE-------LGVA------IDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHH-------HGGG------TTCSCEEETTCCCST
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHH-------HHHh------cchhHHHHHHHHHHH
Confidence 34788899999999999999999999999988777665443211 111 1112 234678999999988
Q ss_pred C-CCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccC
Q 002159 781 P-ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 781 ~-~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ 844 (958)
. .|+..... +. . ....+...+||. +.|+++||+++.+ ++++||||++..++...
T Consensus 230 ~~~r~l~~~~-~~-~-~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 230 GESRDLPSGQ-GI-N-NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTTCCCCS-HH-H-HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHhhccccC-cc-h-HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 6 33321111 11 1 224455556653 4578899999999 89999999999988853
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.4e-07 Score=105.24 Aligned_cols=125 Identities=18% Similarity=0.289 Sum_probs=84.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccchhchHHHHHHHHHHhh------cCCCeEEeecchhhh
Q 002159 400 VLLHGLPGCGKRTVVRYVARRLGI-----HVVEYSCHNLMASSERKTSAALAQAFNTAQ------SYSPTILLLRDFDVF 468 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~lg~-----~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~------~~~P~IL~iDeid~L 468 (958)
++|+|||||||||+++++|+.+.. .+.++++++..+ ...++..+.... ...+.++++||+|.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l 122 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM 122 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC
Confidence 899999999999999999999732 467777654211 223333222211 123689999999987
Q ss_pred hhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEEE
Q 002159 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (958)
Q Consensus 469 ~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~eI 548 (958)
... ....+...+++. ...+.+|.+||.+..+.+.+++|+. .+
T Consensus 123 ~~~------------~~~~L~~~le~~-------------------------~~~~~~il~~n~~~~i~~~i~sR~~-~~ 164 (340)
T 1sxj_C 123 TNA------------AQNALRRVIERY-------------------------TKNTRFCVLANYAHKLTPALLSQCT-RF 164 (340)
T ss_dssp CHH------------HHHHHHHHHHHT-------------------------TTTEEEEEEESCGGGSCHHHHTTSE-EE
T ss_pred CHH------------HHHHHHHHHhcC-------------------------CCCeEEEEEecCccccchhHHhhce-eE
Confidence 541 112222222221 3456777888999999999999974 78
Q ss_pred EcCCCCHHHHHHHHHHhccC
Q 002159 549 SMGPLTEQQRVEMLSQLLQP 568 (958)
Q Consensus 549 sig~Pde~qR~~Il~~ll~~ 568 (958)
.+..++..+..+++...+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHT
T ss_pred eccCCCHHHHHHHHHHHHHH
Confidence 89889998888888877643
No 178
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=98.62 E-value=1.9e-07 Score=94.38 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=106.8
Q ss_pred CceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccccc
Q 002159 92 DSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMELL 171 (958)
Q Consensus 92 ~~~~v~l~~~~l~~l~~~~g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (958)
.+++|-|+.+.|..|++.+|+.|.|++.. +..+++..-.+.. . ..
T Consensus 23 ~~~~vrL~~~~~~~L~~~~gd~VeI~g~~---~t~~~~w~~~~~~----~----------------------------d~ 67 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHLLQNQAIEVASDH---QPTYLSWVEGRHF----N----------------------------DQ 67 (179)
T ss_dssp SSSCEEECHHHHHHTTCCTTCCEEEESSS---CCEEECEEECSSC----C------------------------------
T ss_pred CCcEEECCHHHHHHcCCCCCcEEEEEeCC---eeEEEEEECCCCc----c----------------------------cC
Confidence 57799999999999999999999998643 4555555532210 0 23
Q ss_pred cCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceeEEEEEecCCCCCcceeeEEEeeecC
Q 002159 172 DRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKIP 251 (958)
Q Consensus 172 ~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~rv~~~~~p 251 (958)
..+++.|++.++.|+|+..|+ .|.+.++.++ +.|+.+.| -|
T Consensus 68 ~~~~I~Id~~~r~n~gv~~Gd----------------------------------~V~V~~~~~~-~~A~~V~l----aP 108 (179)
T 1wlf_A 68 SENVAEINRQVGQKLGLSSGD----------------------------------QVFLRPCSHV-VSCQQVEV----EP 108 (179)
T ss_dssp -CCEEEEEHHHHHHTTCCTTC----------------------------------EEEEEECSCC-EECSEEEE----EE
T ss_pred CCCEEEECHHHHhHCCCCCCC----------------------------------EEEEEECCCC-ccceEEEE----Ec
Confidence 457899999999999999984 5778887886 68986554 35
Q ss_pred CCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEe
Q 002159 252 ECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVE 330 (958)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~ 330 (958)
.... -|. ..+....+|+.+|. ..|+|.+||+|.|.+. +...+.|+|+++.
T Consensus 109 ~~~d--D~e---------i~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~------------------g~~~i~f~V~~~~ 159 (179)
T 1wlf_A 109 LSAD--DWE---------ILELHAISLEQHLLDQIRIVFPKAVVPIWVD------------------QQTYIFIQIVTLM 159 (179)
T ss_dssp SSHH--HHH---------HHHHSCSSHHHHHHHHCCEECTTCEEEEESS------------------SSCEEEEEEEEEE
T ss_pred CCcC--CeE---------EehhHHHHHHHHHhcCceeccCCCEEEEEec------------------CCeEEEEEEEEee
Confidence 5210 021 12344568888886 5899999999999863 2378999999999
Q ss_pred cCCCeEEEEcCCceEEEE
Q 002159 331 PSEETVLRVNCTKTALVL 348 (958)
Q Consensus 331 ~~~~~~~~vd~~~T~l~~ 348 (958)
|+.+.+ ++ ...|.+..
T Consensus 160 P~~~~v-~I-t~~TeI~v 175 (179)
T 1wlf_A 160 PAAPYG-RL-ETNTKLLI 175 (179)
T ss_dssp SCCSSE-EC-CTTCEEEE
T ss_pred CCCCeE-EE-CCCcEEEE
Confidence 944333 33 34455544
No 179
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.61 E-value=6.7e-08 Score=106.45 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=81.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccch---------hchHH---HHHHHHHHhhcCCCeEEe
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE---------RKTSA---ALAQAFNTAQSYSPTILL 461 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~---------g~~e~---~l~~~f~~A~~~~P~IL~ 461 (958)
+.+|||+|+||||||++|++++... +.+++.++|..+..... |...+ .....|+.+. .+++|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~ 101 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLF 101 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEE
Confidence 3469999999999999999999976 56799999987543110 00000 1112344443 47899
Q ss_pred ecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-------C
Q 002159 462 LRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------E 534 (958)
Q Consensus 462 iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-------~ 534 (958)
|||++.+... ....+..+++ +... ...++ .......+.+|+|||.. .
T Consensus 102 LDEi~~l~~~------------~q~~Ll~~l~---~~~~----~~~g~-------~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 102 LDEIGDISPL------------MQVRLLRAIQ---EREV----QRVGS-------NQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp EESCTTCCHH------------HHHHHHHHHH---SSBC----CBTTB-------CCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred EeccccCCHH------------HHHHHHHHHh---cCEe----eecCC-------cccccCCeEEEEecCccHHHHHHhC
Confidence 9999987541 1122222222 1100 00010 01124568899999975 2
Q ss_pred CCChhhhccc-cEEEEcCCCCH--HHHHHHHHHhc
Q 002159 535 GLPPTIRRCF-SHEISMGPLTE--QQRVEMLSQLL 566 (958)
Q Consensus 535 ~Ld~alrrrf-~~eIsig~Pde--~qR~~Il~~ll 566 (958)
.+.+++..|| ...+.++++.+ ++...|+..++
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHH
Confidence 4667777776 45566665553 34444665554
No 180
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=2.6e-07 Score=101.72 Aligned_cols=124 Identities=12% Similarity=0.163 Sum_probs=89.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcccccchhchHHHHHHHHHHhhcC----CCeEEeecchhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDV 467 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l------g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~----~P~IL~iDeid~ 467 (958)
..+||+||||+|||++++++|+.. .+++.+++..+ .......++.+.+.+... ...|++|||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 368999999999999999999874 45777777542 123445677777777632 236999999998
Q ss_pred hhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCCCCChhhhccccEE
Q 002159 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (958)
Q Consensus 468 L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~~Ld~alrrrf~~e 547 (958)
+.. .....+++.+.+. ...+++|.+|+.+..+.+.+++| .
T Consensus 94 lt~---------------~a~naLLk~LEep----------------------~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 94 MTQ---------------QAANAFLKALEEP----------------------PEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp BCH---------------HHHHHTHHHHHSC----------------------CTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred hCH---------------HHHHHHHHHHhCC----------------------CCCeEEEEEECChHhChHHHHce---e
Confidence 754 1123333333221 46778888888999999999999 7
Q ss_pred EEcCCCCHHHHHHHHHHhc
Q 002159 548 ISMGPLTEQQRVEMLSQLL 566 (958)
Q Consensus 548 Isig~Pde~qR~~Il~~ll 566 (958)
+.+..|++++....++..+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8888888888888887665
No 181
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.56 E-value=5.1e-09 Score=127.87 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=38.5
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCc--ccCCCC-------CcHHHHHHHhhhc--CC----CChhhHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVS--ELTSDT-------GSEEFVKDIIGQT--SG----FMPRDLHA 599 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~--~l~~D~-------~~~~~L~~la~~t--~G----fv~~DL~~ 599 (958)
..+...++|+| ++||++|++++..++. .+.+|+ ....++.++.+.. .| ++.||+..
T Consensus 196 ~~~~~~~LSGG---e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 196 LSRSAGTLSGG---EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp TTCBGGGSCHH---HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred hcCCcccCCHH---HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 34566789999 9999999999998876 664443 3344444443322 24 78999874
No 182
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.52 E-value=1.7e-07 Score=106.69 Aligned_cols=170 Identities=18% Similarity=0.297 Sum_probs=101.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC---Cceeeeccchhhhc-----ccc--------chhhhHHHHHHHHHhcCCcEE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINM-----YIG--------ESEKNVRDIFQKARSARPCVI 771 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~---~~~i~v~~~~l~~~-----~~G--------ese~~vr~lf~~A~~~~P~IL 771 (958)
...++++|++||||+++|+++..... .+|+.+++..+... .+| ... .....|..|.. .+|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEE
Confidence 45689999999999999999988764 68999998765321 222 111 12345665543 599
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----CC---CCCCcEEEEEecCCCCCCChhhcCcCCccce----
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----LN---DSSQDLFIIGASNRPDLIDPALLRPGRFDKL---- 839 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~~---~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~---- 839 (958)
|||||+.+. ..+...|+..|+. +. ...-++.||+|||+.- ..+.+.|+|..-
T Consensus 236 fldei~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l---~~~~~~g~fr~dl~~r 299 (387)
T 1ny5_A 236 FLDEIGELS-------------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI---KELVKEGKFREDLYYR 299 (387)
T ss_dssp EEESGGGCC-------------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH---HHHHHTTSSCHHHHHH
T ss_pred EEcChhhCC-------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH---HHHHHcCCccHHHHHh
Confidence 999999885 2345555555542 11 1123678999999742 233445666543
Q ss_pred ---eeccCCCCHHHHHHH---HHHHHhh----ccCC-CCcCHHHHHhhCCCCCCHH--HHHHHHHHHHHHH
Q 002159 840 ---LYVGVNSDVSYRERV---LKALTRK----FKLL-EDVSLYSIAKKCPPNFTGA--DMYALCADAWFHA 897 (958)
Q Consensus 840 ---I~v~~ppd~~~r~~I---l~~~~~~----~~~~-~d~~l~~la~~~t~g~sGa--Di~~l~~~A~~~A 897 (958)
+.+.+||=.+++.+| .+.++++ .... ..++-+.+...+.+.|.|. +|++++++|+..+
T Consensus 300 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 300 LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 234456655555544 3444332 2211 1233333333323577774 9999998877653
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.52 E-value=1.8e-07 Score=92.00 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
.+..++|+||+|+|||||++++++.+ |...+.+++.++... +....|.+++|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 35569999999999999999999988 667888888776643 112357899999998754
No 184
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.48 E-value=2.5e-07 Score=95.41 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred cEEEecCCCChhHHHHHHHHHHc--------C-Cceeeeccchhhhccc----------cchhh--hHHHHHHHH--Hhc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATEC--------S-LNFLSVKGPELINMYI----------GESEK--NVRDIFQKA--RSA 766 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~--------~-~~~i~v~~~~l~~~~~----------Gese~--~vr~lf~~A--~~~ 766 (958)
-.+++|+||+|||++|..++... | .+++..+.+++.-.+. ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 57899999999999998865432 3 4554455444432221 11111 112333332 234
Q ss_pred CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCccceeeccC
Q 002159 767 RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 767 ~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd~~I~v~~ 844 (958)
..+||+|||++.+.+.+....+. . .++..+... ....+-||.+|+.++.||.++++ |++..++++.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~----~----rll~~l~~~--r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKI----P----ENVQWLNTH--RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCC----C----HHHHGGGGT--TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred CceEEEEEChhhhccCccccchh----H----HHHHHHHhc--CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 57899999999998765322111 1 344555433 23456677888889999999988 9999999985
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.48 E-value=1.2e-07 Score=97.34 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=49.5
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-hhhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-se~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
.+++|+||+|||||+||++++..+ +.+++.++.+++...+... ....+..++..... +.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 789999999999999999999987 5678778877766543221 11123444554443 3599999997754
No 186
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.47 E-value=1.3e-06 Score=99.29 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=102.2
Q ss_pred CceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccccc----------------hhchHHH-HHHH
Q 002159 397 RVAVLL--HGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS----------------ERKTSAA-LAQA 448 (958)
Q Consensus 397 ~~~VLL--~GppGtGKTTLaraIA~~l---------g~~~~~I~~~~l~s~~----------------~g~~e~~-l~~~ 448 (958)
+..++| +||+|+|||++++.+++.+ +..++.++|....... .+..... +..+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 346888 9999999999999999887 4567888874321100 0111111 2222
Q ss_pred HHHh-hcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhc--CcEE
Q 002159 449 FNTA-QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR--QQVL 525 (958)
Q Consensus 449 f~~A-~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~--~~Vi 525 (958)
.... ....|.+++|||++.+..... .....+..+++.+.. . .... .++.
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~---------~~~~~l~~l~~~~~~-~------------------~~~~~~~~v~ 181 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPR---------IAAEDLYTLLRVHEE-I------------------PSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTT---------SCHHHHHHHHTHHHH-S------------------CCTTSCCBEE
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccC---------cchHHHHHHHHHHHh-c------------------ccCCCCceEE
Confidence 2211 124589999999998864100 001112222211110 0 0002 6788
Q ss_pred EEEecCCCC---CCC---hhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcC------CCC
Q 002159 526 LVAAADSSE---GLP---PTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS------GFM 593 (958)
Q Consensus 526 VIaaTn~~~---~Ld---~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~------Gfv 593 (958)
+|++|+.+. .++ +.+.+++...+.+++++.++..+++...+..... ...-....+..++..+. |.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~- 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS- 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC-
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc-
Confidence 898887654 233 5555666666999999999999999766532110 01122445666777776 53
Q ss_pred hhhHHHHHHHHHHHH
Q 002159 594 PRDLHALVADAGANL 608 (958)
Q Consensus 594 ~~DL~~Lv~eA~~~a 608 (958)
++.+..++..+...+
T Consensus 259 p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 259 ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556665554433
No 187
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.40 E-value=4.8e-07 Score=109.03 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=50.6
Q ss_pred cCcEEEEEecCCC--CCCChhhhcccc---EEEEcCCC---CHHHHHHHHHHhccCCcc--cCCCCCcHHHHHHHhh---
Q 002159 521 RQQVLLVAAADSS--EGLPPTIRRCFS---HEISMGPL---TEQQRVEMLSQLLQPVSE--LTSDTGSEEFVKDIIG--- 587 (958)
Q Consensus 521 ~~~ViVIaaTn~~--~~Ld~alrrrf~---~eIsig~P---de~qR~~Il~~ll~~~~~--l~~D~~~~~~L~~la~--- 587 (958)
..++.||+|||.. ..+++++++||. .++.+... +......+++.+.+.... .....+ .+.+..++.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~~Li~~~~ 328 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVEEIVREAQ 328 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHHHHHHHHh
Confidence 4578899999976 679999999985 56665432 234455555444322110 001111 233344443
Q ss_pred hcCCC------ChhhHHHHHHHHHHHHH
Q 002159 588 QTSGF------MPRDLHALVADAGANLI 609 (958)
Q Consensus 588 ~t~Gf------v~~DL~~Lv~eA~~~a~ 609 (958)
+..|- ..+++..+++.|...+.
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~ 356 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAV 356 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHH
Confidence 33562 67888889988765553
No 188
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.36 E-value=9.7e-07 Score=78.34 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHh
Q 002159 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKV 630 (958)
Q Consensus 551 g~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~ 630 (958)
.+||.++|.+||+.++++... ..+++ ++.+|..|.||+|+||..||++|++.++++.
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l-~~dvd----l~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------ 65 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNL-TRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRER------------------ 65 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEE-CTTCC----CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------
T ss_pred CCcCHHHHHHHHHHHHcCCCC-CcccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------
Confidence 579999999999999987653 33454 5889999999999999999999999998752
Q ss_pred hhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 631 AHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 631 ~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
...++++||..|+.+.++
T Consensus 66 ----------~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 ----------RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ----------CSEECHHHHHHHHHHHHC
T ss_pred ----------CCCCCHHHHHHHHHHHcc
Confidence 246789999999987743
No 189
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.35 E-value=1.1e-06 Score=76.30 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHh
Q 002159 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKV 630 (958)
Q Consensus 551 g~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~ 630 (958)
|.||.++|.+|++.++++... ..+++ ++.++..|.||+|+||..+|++|++.++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-~~~~d----l~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------ 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-TRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRER------------------ 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-CTTCC----HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCC-CCccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------
Confidence 579999999999999987653 33443 6889999999999999999999999998752
Q ss_pred hhcCcchhhhhccccHHHHHHHHHhhcc
Q 002159 631 AHNDNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 631 ~~~~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
...++++||..|+.+...
T Consensus 58 ----------~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 ----------RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ----------CSEECHHHHHHHHHHHHC
T ss_pred ----------CCCCCHHHHHHHHHHHHh
Confidence 246789999999987643
No 190
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.33 E-value=4.5e-08 Score=110.49 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=31.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||||||||+|++|+.+.+.-++|..
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 334445559999999999999999999999887776643
No 191
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.31 E-value=2.8e-07 Score=92.97 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=45.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccchhchHH-HHHHHHHHhhcCCCeEEeecchhhh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASSERKTSA-ALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l----g~~~~~I~~~~l~s~~~g~~e~-~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
..+.+++|+||||||||||++++++.+ |..+..+++.++.......... .....+... ..|.+++|||++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 446779999999999999999999987 5566666665544322110000 000111111 26789999998743
No 192
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.31 E-value=1.1e-07 Score=100.91 Aligned_cols=39 Identities=23% Similarity=0.144 Sum_probs=32.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.+..+..+.|.||||||||||+|++++.+.+.-++|..
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 344555559999999999999999999999888777654
No 193
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.30 E-value=7.4e-08 Score=107.96 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.+..|.-+.|.||||||||||+|++|+.+.+.-++|.
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 33444555999999999999999999999988877664
No 194
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.28 E-value=8.4e-08 Score=107.49 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.+.-+.|.||||||||||+|++|+.+.+.-++|..
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 34444559999999999999999999998887776643
No 195
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.28 E-value=8.4e-08 Score=107.75 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.+.-+.|.||||||||||+|++|+.+.+.-++|..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 334555559999999999999999999998887776643
No 196
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.28 E-value=1.7e-06 Score=97.72 Aligned_cols=170 Identities=19% Similarity=0.319 Sum_probs=96.7
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCc--eeeeccchhhhc-----cccch-------hhhHHHHHHHHHhcCCcEEEE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINM-----YIGES-------EKNVRDIFQKARSARPCVIFF 773 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~--~i~v~~~~l~~~-----~~Ges-------e~~vr~lf~~A~~~~P~ILfi 773 (958)
...++++|++||||+++|+++....+.. |+.+++..+-.. .+|.. .+.-...|..|.. ..|||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfl 228 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFL 228 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEE
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEe
Confidence 4569999999999999999999877543 999988754221 12211 1112234555543 49999
Q ss_pred cccccccCCCCCCCCCcchHHHHHHHHHHhhcC-----CCCC---CCcEEEEEecCCCCCCChhhcCcCCccc-------
Q 002159 774 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDG-----LNDS---SQDLFIIGASNRPDLIDPALLRPGRFDK------- 838 (958)
Q Consensus 774 DEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg-----~~~~---~~~v~VI~aTNrp~~ldpaLlrpgRfd~------- 838 (958)
|||+.+. ..+...||..|+. +... .-++-+|+|||+. + ..+...|+|..
T Consensus 229 dei~~l~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l-~~~v~~g~fr~dL~~rl~ 292 (368)
T 3dzd_A 229 DEVGELD-------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN--L-EEEIKKGNFREDLYYRLS 292 (368)
T ss_dssp ETGGGSC-------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC--H-HHHHHTTSSCHHHHHHHT
T ss_pred cChhhCC-------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC--H-HHHHHcCCccHHHHHHhC
Confidence 9999885 2455566666642 1111 1256789999863 2 23344566654
Q ss_pred eeeccCCCCHHHHHHH---HHHHHhhc----cCC-CCcCHHHHHhhCCCCCCH--HHHHHHHHHHHHH
Q 002159 839 LLYVGVNSDVSYRERV---LKALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFH 896 (958)
Q Consensus 839 ~I~v~~ppd~~~r~~I---l~~~~~~~----~~~-~d~~l~~la~~~t~g~sG--aDi~~l~~~A~~~ 896 (958)
.+.+.+||=.+++.+| .+.++++. ... ..++-+.+...+.+.|.| ++|.+++.+|+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3334455655544443 34444332 111 223333333322356666 6777777776543
No 197
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.26 E-value=8.7e-08 Score=107.72 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=31.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.+.-+.|.||||||||||+|++|+.+.+.-++|..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 334445559999999999999999999998887776643
No 198
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.26 E-value=1.1e-07 Score=107.44 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=31.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.+.-+.|.||||||||||+|++|+.+.+.-+.|..
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 334445559999999999999999999998887776643
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.25 E-value=3.1e-07 Score=101.32 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=47.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC----Cceeeeccchhhhccccch-hhhHHHHHHHHHhcCCcEEEEccccccc
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGPELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLA 780 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~----~~~i~v~~~~l~~~~~Ges-e~~vr~lf~~A~~~~P~ILfiDEiD~l~ 780 (958)
+.+++|+||||||||+||+++|.++. .+++.+..+++...+.+.. ......++.... .+.+|+|||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 67899999999999999999998654 6787788877765433211 111122233332 34699999997654
No 200
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.24 E-value=2.3e-07 Score=100.57 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 334445559999999999999999999998888776653
No 201
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.23 E-value=1.2e-07 Score=102.49 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=30.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.++.|.-+.|.||||+|||||+|++++.+.+.-++|.
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 69 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 344455555999999999999999999998877654443
No 202
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.21 E-value=1.8e-07 Score=104.64 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
++.+.-+.|.||||||||||+|++|+...+.-++|..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 4444559999999999999999999998887776654
No 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=2.4e-05 Score=86.62 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=96.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh-----------hhc---------------------ccc------
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL-----------INM---------------------YIG------ 750 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l-----------~~~---------------------~~G------ 750 (958)
..++++||+|+|||+|++.++.+.+..++.+++... ... ..|
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 479999999999999999999988766666665432 000 000
Q ss_pred --c------hhhhHHHHHHHHHhc--CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEec
Q 002159 751 --E------SEKNVRDIFQKARSA--RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 820 (958)
Q Consensus 751 --e------se~~vr~lf~~A~~~--~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aT 820 (958)
. ....+..+++..... .|.+|+|||++.+.... +... ...+..+... . .++.+|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-----~~~~-~~~l~~~~~~---~----~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-----GVNL-LPALAYAYDN---L----KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----TCCC-HHHHHHHHHH---C----TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----chhH-HHHHHHHHHc---C----CCeEEEEEc
Confidence 0 122455666655543 48999999999987421 1111 2333444332 1 245666666
Q ss_pred CCCCCCC---------hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 821 NRPDLID---------PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 821 Nrp~~ld---------paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
+....+. ..+ .||+...+.++ |.+.++-.++++..........+ +...+...| .|+-.. +..++.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~-~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t-~G~P~~-l~~~~~ 251 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPL--FGRAFSTVELK-PFSREEAIEFLRRGFQEADIDFK-DYEVVYEKI-GGIPGW-LTYFGF 251 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTT--TTCCCEEEEEC-CCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHH-CSCHHH-HHHHHH
T ss_pred CchHHHHHHHhccCCCCcc--ccCccceeecC-CCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHh-CCCHHH-HHHHHH
Confidence 5432111 112 24777788888 47888888888776653332222 237777774 776543 444443
No 204
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.20 E-value=1e-07 Score=106.90 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.+.-+.|.||||||||||+|++|+.+.+.-+.|..
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3344555559999999999999999999998887766643
No 205
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.19 E-value=1.2e-07 Score=107.12 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=31.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.+.-+.|.||||||||||+|++|+.+.+.-+.|..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 334445559999999999999999999998887766643
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.16 E-value=6.9e-06 Score=83.09 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.2
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLN 735 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~ 735 (958)
.++|+||||+|||||+++|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999988643
No 207
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.15 E-value=4e-06 Score=74.69 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhc
Q 002159 554 TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHN 633 (958)
Q Consensus 554 de~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~ 633 (958)
|.++|.+|++.++++.+. ..|++ ++.+|..|+||+|+||..||++|++.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNSTGAELRSVCTEAGMFAIRAR--------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-CSCCC----HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS---------------------
T ss_pred CHHHHHHHHHHHHCCCCC-CCccC----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc---------------------
Confidence 578999999999987653 34444 6889999999999999999999999998752
Q ss_pred CcchhhhhccccHHHHHHHHHhhcc
Q 002159 634 DNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 634 ~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
...++++||..|+.++..
T Consensus 56 -------~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 56 -------RKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp -------CSSBCHHHHHHHHHHHTC
T ss_pred -------cccCCHHHHHHHHHHHhc
Confidence 235789999999998753
No 208
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.14 E-value=2.9e-07 Score=103.22 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=31.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 334455559999999999999999999998887776643
No 209
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.12 E-value=6.9e-06 Score=94.11 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=69.7
Q ss_pred CcEEEecCCCChhHHHHHHH-HHHcCCceee-eccc---hhhhccc--cchhhhHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 709 SGVLLYGPPGTGKTLLAKAV-ATECSLNFLS-VKGP---ELINMYI--GESEKNVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakai-A~~~~~~~i~-v~~~---~l~~~~~--Gese~~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
-++||.|+||| ||+||+++ +..+....+. ..++ .+..... +... .-...+..|. -.|+|+||++.+.
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~-~~~G~l~LAd---gGvl~lDEIn~~~- 313 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWA-LRAGAAVLAD---GGILAVDHLEGAP- 313 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEE-EEECHHHHTT---TSEEEEECCTTCC-
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcc-cCCCeeEEcC---CCeeehHhhhhCC-
Confidence 37999999999 99999999 7665433221 1111 1111100 0000 0011223332 2599999998774
Q ss_pred CCCCCCCCcchHHHHHHHHHHhhcCCC------CCCCcEEEEEecCCCC-----------CCChhhcCcCCccceeec
Q 002159 782 ARGASGDSGGVMDRVVSQMLAEIDGLN------DSSQDLFIIGASNRPD-----------LIDPALLRPGRFDKLLYV 842 (958)
Q Consensus 782 ~r~~~~~~~~~~~rv~~~LL~~ldg~~------~~~~~v~VI~aTNrp~-----------~ldpaLlrpgRfd~~I~v 842 (958)
....+.|+..|+.-. .-..++.||||+|..+ .|+++++. |||-.+.+
T Consensus 314 ------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~ 377 (506)
T 3f8t_A 314 ------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFL 377 (506)
T ss_dssp ------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEET
T ss_pred ------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEe
Confidence 356667777665211 2234688999999865 78899999 99865543
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.11 E-value=2.5e-06 Score=93.64 Aligned_cols=74 Identities=9% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIH--VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~--~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
..+..++|+||||||||+|+..+|...|.. ++.....+.+..+....+..+..+++...... +++||+++.+..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 445568999999999999999999875544 44442233333223344555555555555443 999999999865
No 211
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.11 E-value=2.7e-07 Score=97.05 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=31.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||+|||||+|++++.+.+..++|..
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 334455559999999999999999999998887777654
No 212
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.10 E-value=2.6e-07 Score=98.17 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++. ..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3444 559999999999999999999998887777654
No 213
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.09 E-value=3.2e-07 Score=99.03 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=32.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.+..|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 3444555569999999999999999999998888777654
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.07 E-value=2.7e-06 Score=87.16 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccchhch-HHHHHHHHHHhhcCCCeEEeecchhhhh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKT-SAALAQAFNTAQSYSPTILLLRDFDVFR 469 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~~g~~-e~~l~~~f~~A~~~~P~IL~iDeid~L~ 469 (958)
.+++|+||+|||||++++++++.+ +..++.++++++........ ...+...+.... .+.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 679999999999999999999988 66788888876543221110 001122222222 24599999997543
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.06 E-value=5.4e-07 Score=97.02 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3344555559999999999999999999998887776643
No 216
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.04 E-value=1.6e-06 Score=93.39 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=32.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 3444555569999999999999999999998887776643
No 217
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.01 E-value=5.4e-07 Score=96.26 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=32.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~ 431 (958)
.+.+..|..+.|.||||+|||||+|++++.+.+. ++|...
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 3445556669999999999999999999998888 877543
No 218
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.97 E-value=5.1e-07 Score=97.23 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=32.9
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.-.+.++ +..+.|.||||+|||||+|++++.+ +.-++|..
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 3344556 6679999999999999999999999 88777754
No 219
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.96 E-value=1.1e-06 Score=94.33 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.+..|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3444555559999999999999999999998887777654
No 220
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.95 E-value=3.7e-06 Score=90.00 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.++.|..+.|.||||+|||||++++++.+.+..+.|.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 334455555999999999999999999999888777775
No 221
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.95 E-value=7.4e-05 Score=82.52 Aligned_cols=166 Identities=20% Similarity=0.223 Sum_probs=90.2
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchhh------------h---ccccc---------------------h
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI------------N---MYIGE---------------------S 752 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l~------------~---~~~Ge---------------------s 752 (958)
..++++||+|+|||+|++.++...+ .+.+++.... . ..++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5799999999999999999999875 4444433211 0 00000 0
Q ss_pred hhhHHHHHHHH----HhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC-
Q 002159 753 EKNVRDIFQKA----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID- 827 (958)
Q Consensus 753 e~~vr~lf~~A----~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld- 827 (958)
...+.++++.. ....|.+|+|||++.+..... ... ..++..|-..++.. .++.+|.|+.....++
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~---~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGG---KELLALFAYAYDSL----PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTT---HHHHHHHHHHHHHC----TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cch---hhHHHHHHHHHHhc----CCeEEEEECCcHHHHHH
Confidence 12334444332 223489999999999864110 001 12333332333322 3555666654321111
Q ss_pred --------hhhcCcCCccceeeccCCCCHHHHHHHHHHHHhhccCC-CCcCHHHHHhhCCCCCCHHHHHHHHH
Q 002159 828 --------PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 891 (958)
Q Consensus 828 --------paLlrpgRfd~~I~v~~ppd~~~r~~Il~~~~~~~~~~-~d~~l~~la~~~t~g~sGaDi~~l~~ 891 (958)
..+ .||+...+.++ |-+.++-.++++...+..... .+..+..+...| .|+-. -+..++.
T Consensus 180 ~l~~~~~~~~l--~~~~~~~i~l~-pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~-~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPL--YGRIAGEVLVK-PFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPG-WLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTT--TTCCCEEEECC-CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHH-HHHHHHH
T ss_pred HHhhcCCCCcc--ccCccceeeCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHH-HHHHHHH
Confidence 112 24776788888 478777777877665433221 223456677774 67654 3444443
No 222
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.95 E-value=0.00011 Score=81.19 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=89.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-----cch---------------------------h------
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-----SSE---------------------------R------ 439 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s-----~~~---------------------------g------ 439 (958)
..++|+||+|+|||+|++.++++.+ .+.++|..... ... +
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 3599999999999999999999976 66676643210 000 0
Q ss_pred -ch-HHHHHHHHHHhhcCCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhh
Q 002159 440 -KT-SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE 517 (958)
Q Consensus 440 -~~-e~~l~~~f~~A~~~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~ 517 (958)
.. ...+..+.+.+....|.+++|||++.+.... ......+...++.+.+.
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---------~~~~~~~~~~L~~~~~~------------------- 161 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---------SRGGKELLALFAYAYDS------------------- 161 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT---------TTTTHHHHHHHHHHHHH-------------------
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC---------ccchhhHHHHHHHHHHh-------------------
Confidence 01 1111111122222248999999999875310 00112334444443210
Q ss_pred hhhcCcEEEEEecCCC---------CCCChhhhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhh
Q 002159 518 KICRQQVLLVAAADSS---------EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (958)
Q Consensus 518 ~~~~~~ViVIaaTn~~---------~~Ld~alrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~ 588 (958)
..++.+|.++... ......+..++...+.+++.+.++-.+++...+..... .. ....+..+...
T Consensus 162 ---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~-~~~~~~~i~~~ 234 (350)
T 2qen_A 162 ---LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DV-PENEIEEAVEL 234 (350)
T ss_dssp ---CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CC-CHHHHHHHHHH
T ss_pred ---cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHH
Confidence 1345555554321 11122244455678999999999999998876643221 11 23456778888
Q ss_pred cCCCC
Q 002159 589 TSGFM 593 (958)
Q Consensus 589 t~Gfv 593 (958)
+.|+-
T Consensus 235 tgG~P 239 (350)
T 2qen_A 235 LDGIP 239 (350)
T ss_dssp HTTCH
T ss_pred hCCCH
Confidence 88853
No 223
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.94 E-value=2.5e-06 Score=90.63 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 334455559999999999999999999998887777654
No 224
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.91 E-value=1.4e-05 Score=70.15 Aligned_cols=72 Identities=14% Similarity=0.288 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhc
Q 002159 554 TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHN 633 (958)
Q Consensus 554 de~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~ 633 (958)
|.++|.+|++.++++.+. ..+++ ++.+|..|.||+|+||..+|++|++.++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~-~~~vd----l~~la~~t~G~SGADi~~l~~eA~~~a~~~~--------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNL-SEEVD----LEDYVARPDKISGADINSICQESGMLAVREN--------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCB-CTTCC----THHHHTSSCCCCHHHHHHHHHHHHHGGGTSC---------------------
T ss_pred CHHHHHHHHHHHhCCCCC-CcccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---------------------
Confidence 689999999999987653 33444 5889999999999999999999998876531
Q ss_pred CcchhhhhccccHHHHHHHHHhhcc
Q 002159 634 DNSSIAATQVMGKEDLVKAMERSKK 658 (958)
Q Consensus 634 ~~~~~~~~~~~~~ed~~~al~~~~~ 658 (958)
...++++||..|+...++
T Consensus 56 -------~~~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 56 -------RYIVLAKDFEKAYKTVIK 73 (83)
T ss_dssp -------CSSBCHHHHHHHHHHHCC
T ss_pred -------cCCcCHHHHHHHHHHHcc
Confidence 246889999999998753
No 225
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=5.9e-05 Score=76.18 Aligned_cols=27 Identities=37% Similarity=0.758 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHV 425 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~ 425 (958)
.++|+||||+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 489999999999999999999987544
No 226
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.91 E-value=0.00013 Score=80.55 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=30.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~ 432 (958)
.++|+||+|+|||+|++.++++++...+.+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 5999999999999999999999887778888754
No 227
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.88 E-value=3.4e-06 Score=90.50 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 334455559999999999999999999998887776654
No 228
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.85 E-value=9.3e-06 Score=83.37 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCcee
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL 737 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i 737 (958)
++++..+++||||||||||++|.++|+.+...++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 5666678999999999999999999999865443
No 229
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.83 E-value=2.1e-06 Score=91.80 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred hhhccccEE-EEcCCCCHHHHHHHHHHhccCCcccCCCCCc
Q 002159 539 TIRRCFSHE-ISMGPLTEQQRVEMLSQLLQPVSELTSDTGS 578 (958)
Q Consensus 539 alrrrf~~e-Isig~Pde~qR~~Il~~ll~~~~~l~~D~~~ 578 (958)
.+..+...+ +|+| ++||+.|++.++.+++.+.+|+..
T Consensus 134 ~~~~~~~~~~LSgG---qkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 134 SYLSRYLNEGFSGG---EKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp GGGGSBTTCC-------HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred hHhcCCcccCCCHH---HHHHHHHHHHHHcCCCEEEEeCCC
Confidence 334454566 9999 999999999999999888666543
No 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.78 E-value=8.4e-06 Score=89.55 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=32.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|..+.|+||+|+|||||++++++.+.+.-+.|..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i 113 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEE
Confidence 3344555569999999999999999999998887766643
No 231
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=2e-06 Score=91.85 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 344555559999999999999999999998887776643
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.74 E-value=3.3e-06 Score=88.04 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=31.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.++.|.-+.|.||||+|||||+|++++.+.+..+.|..
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 334445559999999999999999999998887777654
No 233
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.74 E-value=3.5e-06 Score=90.98 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRL--GIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~l--g~~~~~I~ 429 (958)
.+.++.|.-+.|.||||+|||||+|++++.+ .+.-++|.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~ 80 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 80 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE
Confidence 3444555559999999999999999999874 33445543
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.74 E-value=6e-05 Score=79.32 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHH--HH--cCCceeeeccchhhh------cccc-----------------------
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVA--TE--CSLNFLSVKGPELIN------MYIG----------------------- 750 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA--~~--~~~~~i~v~~~~l~~------~~~G----------------------- 750 (958)
++.++.-++|.||||+|||||+++++ +. .+...+.+.+.+... ..+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 67888999999999999999999998 43 233333332211100 0000
Q ss_pred -------------chhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEE
Q 002159 751 -------------ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFII 817 (958)
Q Consensus 751 -------------ese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI 817 (958)
..+.....+........|.++++||.-++..... + .....+.+..++..+.. .++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d-~~~~~~~l~~l~~~l~~-----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---E-ERKIREVLLKLNTILLE-----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---S-GGGHHHHHHHHHHHHHH-----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---C-HHHHHHHHHHHHHHHHH-----CCCeEE
Confidence 0111223333444567899999999987763211 1 12234446666666632 244566
Q ss_pred EecCCCCCCC-----hhhcCcCCc-cceeecc
Q 002159 818 GASNRPDLID-----PALLRPGRF-DKLLYVG 843 (958)
Q Consensus 818 ~aTNrp~~ld-----paLlrpgRf-d~~I~v~ 843 (958)
.+|...+... +.+.. -+ |+++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 6777665542 22222 45 7777775
No 235
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.73 E-value=1.8e-06 Score=97.99 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=28.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
+.++.+.-+.|.||+|||||||+|++++.+. .-++|.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~ 78 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE
Confidence 3344445599999999999999999998765 555543
No 236
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.72 E-value=3.7e-06 Score=89.42 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=29.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.+.++.|..+.|.||||+|||||++++++.+.+.-+.|
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 34445555699999999999999999999886654443
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.71 E-value=1.5e-05 Score=87.79 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=44.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCcccccchhc-hHHHHHHHHHHhhcCCCeEEeecchhhh
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLG----IHVVEYSCHNLMASSERK-TSAALAQAFNTAQSYSPTILLLRDFDVF 468 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg----~~~~~I~~~~l~s~~~g~-~e~~l~~~f~~A~~~~P~IL~iDeid~L 468 (958)
+.+++|+||+|||||+|++++|+++. ..+..+++++++...... ....+...+.... .+.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 56899999999999999999998664 677778877654322111 1111112222222 3468999999654
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.70 E-value=4e-06 Score=91.04 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=32.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 3444555559999999999999999999998887777654
No 239
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.69 E-value=1.7e-05 Score=95.00 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.3
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.-.+.++.|..+.|+||+|+|||||++.+++...+.-++|
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 3344455556699999999999999999999987765544
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=7.8e-05 Score=76.86 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 742 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~ 742 (958)
|+.++.-++|+||||+|||||++.++...+..++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 788889999999999999999999998556666665543
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=5.2e-05 Score=79.52 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHH--c-------CCceeeeccchh------hh--ccccc--------------
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATE--C-------SLNFLSVKGPEL------IN--MYIGE-------------- 751 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~--~-------~~~~i~v~~~~l------~~--~~~Ge-------------- 751 (958)
.|+.++.-++|+||||+|||||++.++.. . +...+.+++.+. .. ..+|.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 47888899999999999999999999985 2 344566654331 00 00110
Q ss_pred -h-h---hhHHHHHHHHHhcCCcEEEEcccccccC
Q 002159 752 -S-E---KNVRDIFQKARSARPCVIFFDELDSLAP 781 (958)
Q Consensus 752 -s-e---~~vr~lf~~A~~~~P~ILfiDEiD~l~~ 781 (958)
+ + ..+..+.+.+....|.+|+|||+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0 1 1122344445567899999999998874
No 242
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.66 E-value=2.4e-05 Score=80.54 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=71.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEecCcccccch----------hc-----hHHHHHHHHHHhhc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARR--------LG-IHVVEYSCHNLMASSE----------RK-----TSAALAQAFNTAQS 454 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~--------lg-~~~~~I~~~~l~s~~~----------g~-----~e~~l~~~f~~A~~ 454 (958)
-++++|+||+|||+++...+.. .| ..++..++.++.-... .. ....+...+..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 4799999999999998876433 34 4555566655432111 00 1122222221122
Q ss_pred CCCeEEeecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC
Q 002159 455 YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (958)
Q Consensus 455 ~~P~IL~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~ 534 (958)
...++++|||++.+.+.+. +. .+ . .+++..+.. .....+-+|.+|+.+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~-~~--~e---~----~rll~~l~~---------------------~r~~~~~iil~tq~~~ 134 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARS-AG--SK---I----PENVQWLNT---------------------HRHQGIDIFVLTQGPK 134 (199)
T ss_dssp GTTCEEEETTGGGTSBCCC-TT--CC---C----CHHHHGGGG---------------------TTTTTCEEEEEESCGG
T ss_pred cCceEEEEEChhhhccCcc-cc--ch---h----HHHHHHHHh---------------------cCcCCeEEEEECCCHH
Confidence 3578999999999865321 10 00 0 112222211 1133456677777899
Q ss_pred CCChhhhccccEEEEcCCC
Q 002159 535 GLPPTIRRCFSHEISMGPL 553 (958)
Q Consensus 535 ~Ld~alrrrf~~eIsig~P 553 (958)
.++..++.|+...+.+..|
T Consensus 135 ~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 135 LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GBCHHHHTTEEEEEEEEEC
T ss_pred HHhHHHHHHhheEEEEcCc
Confidence 9999999998888877743
No 243
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=0.00017 Score=74.79 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=26.0
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
++.++.-++|+||||+|||||++.++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788889999999999999999999654
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.55 E-value=5e-05 Score=78.87 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=27.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
.++.++.-+.|+||||+|||||++.+++..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888999999999999999999999854
No 245
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.54 E-value=1.6e-05 Score=94.09 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=41.2
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|+++++.+++.+.+|+.. . ..+.++++.... ++.||+..+..
T Consensus 379 ~~~~~~~LSGG---q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 379 LESNVNDLSGG---ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TTSBGGGCCHH---HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hcCChhhCCHH---HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 44667889999 999999999999998888666543 2 233444433222 78899876543
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.53 E-value=0.00017 Score=81.15 Aligned_cols=116 Identities=23% Similarity=0.319 Sum_probs=66.6
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhcc----ccc------------hhhhHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----IGE------------SEKNVRDIFQKA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~----~Ge------------se~~vr~lf~~A 763 (958)
.|+.++.-++|+||||+|||+|+..++..+ +.+++.++...-...+ .|. .+..+..+-+..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 378888899999999999999999988764 4555555543221111 111 112222222233
Q ss_pred HhcCCcEEEEcccccccCCCCCC---CCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 764 RSARPCVIFFDELDSLAPARGAS---GDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~~r~~~---~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
+...+.+|+||.+..+.+..... ++. .+...+.+.+++..|..+.. ..++.||++
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~-~~~~~VI~~ 207 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS-KTGTAAIFI 207 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH-HcCCEEEEE
Confidence 45678999999999998533211 111 01233566777777654322 234555544
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.50 E-value=9.3e-06 Score=87.25 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.+.++.|..+.|.||||+|||||++++++.+.. -+.|.
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~ 77 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK 77 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE
Confidence 344455556999999999999999999998764 56554
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.49 E-value=0.00026 Score=79.18 Aligned_cols=116 Identities=25% Similarity=0.318 Sum_probs=69.2
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc-------------cc---cchhhhHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-------------YI---GESEKNVRDIFQKA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~-------------~~---Gese~~vr~lf~~A 763 (958)
-|+.++.-++|+||||+|||||+..++..+ +..++.+++.+.... ++ ...+..+..+-...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 378888899999999999999999998875 456666665442211 01 01122222222233
Q ss_pred HhcCCcEEEEcccccccCCC---CCCCCC-cchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 764 RSARPCVIFFDELDSLAPAR---GASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~~r---~~~~~~-~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
+...|.+++||.+..+.+.. +..++. -....|.+.+++..|..+.. ..++.||.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak-~~~~tVI~i 194 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN-KSKAVVIFT 194 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHH-TSSCEEEEE
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEE
Confidence 45788999999999888621 111111 11345677777776665432 234444443
No 249
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.49 E-value=2.6e-05 Score=93.60 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=40.4
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|+++++.++..+.+|+.. .. .+.++++...+ ++.||+..+..
T Consensus 465 ~~~~~~~LSGG---e~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 465 YDRNVEDLSGG---ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTSBGGGCCHH---HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hcCChhhCCHH---HHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 44556789999 999999999999998887555443 22 23333322222 78899877643
No 250
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.48 E-value=8e-05 Score=65.24 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccCCcccCCCCCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCcchhhHHhhhcCc
Q 002159 556 QQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDN 635 (958)
Q Consensus 556 ~qR~~Il~~ll~~~~~l~~D~~~~~~L~~la~~t~Gfv~~DL~~Lv~eA~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 635 (958)
++|.+|++.++++.+. ..+++ ++.+|..|.||+|+||..+|++|++.++++.
T Consensus 1 ~~R~~Il~~~l~~~~~-~~~vd----l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~----------------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-APEAD----LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN----------------------- 52 (82)
T ss_dssp -------------CEE-CTTCC----STTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CHHHHHHHHHHcCCCC-CCcCC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 4789999999987653 33444 5789999999999999999999999998752
Q ss_pred chhhhhccccHHHHHHHHHhhc
Q 002159 636 SSIAATQVMGKEDLVKAMERSK 657 (958)
Q Consensus 636 ~~~~~~~~~~~ed~~~al~~~~ 657 (958)
...++++||..|+....
T Consensus 53 -----~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 53 -----RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -----CSEECHHHHHHHHHTTC
T ss_pred -----cCCcCHHHHHHHHHHHH
Confidence 23578999999998763
No 251
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.47 E-value=0.00034 Score=80.21 Aligned_cols=126 Identities=17% Similarity=0.064 Sum_probs=66.6
Q ss_pred eEEEEcCCCChHHHHHHHH-HHHhCCcEEEEecC-----cccccchhchHHH-HHHHHHHhhcCCCeEEeecchhhhhhc
Q 002159 399 AVLLHGLPGCGKRTVVRYV-ARRLGIHVVEYSCH-----NLMASSERKTSAA-LAQAFNTAQSYSPTILLLRDFDVFRNL 471 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraI-A~~lg~~~~~I~~~-----~l~s~~~g~~e~~-l~~~f~~A~~~~P~IL~iDeid~L~~~ 471 (958)
+|||.|+||+ ||+++|++ ++.+ +....+.+. ++.+...+.+... -.-.+..|. ..++|+||++.+.++
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~-pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~ 315 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLA-PRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLAD---GGILAVDHLEGAPEP 315 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTC-SSEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTT---TSEEEEECCTTCCHH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhC-CCeEEecCCCCCccCceEEEEcCCCcccCCCeeEEcC---CCeeehHhhhhCCHH
Confidence 7999999999 99999999 6554 333333221 1111100000000 001122232 479999999876541
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC-----------CCChhh
Q 002159 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----------GLPPTI 540 (958)
Q Consensus 472 ~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~-----------~Ld~al 540 (958)
....+.+.|++-. .... +.....++.||||+|... .|++++
T Consensus 316 ------------~qsaLlEaMEe~~---------------VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~al 367 (506)
T 3f8t_A 316 ------------HRWALMEAMDKGT---------------VTVD-GIALNARCAVLAAINPGEQWPSDPPIARIDLDQDF 367 (506)
T ss_dssp ------------HHHHHHHHHHHSE---------------EEET-TEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHH
T ss_pred ------------HHHHHHHHHhCCc---------------EEEC-CEEcCCCeEEEEEeCcccccCCCCCccccCCChHH
Confidence 1222222222210 0000 114467899999999764 788999
Q ss_pred hcccc-EEEEcCCCCHHH
Q 002159 541 RRCFS-HEISMGPLTEQQ 557 (958)
Q Consensus 541 rrrf~-~eIsig~Pde~q 557 (958)
++||+ ..+..+.|+++.
T Consensus 368 LDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 368 LSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HTTCSEEEETTC------
T ss_pred hhheeeEEEecCCCChhH
Confidence 99994 456677777654
No 252
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.43 E-value=8.7e-05 Score=87.93 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=41.6
Q ss_pred hhccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------HH----HHHHHhhhcCC---CChhhHHHHHH
Q 002159 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------EE----FVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 540 lrrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~~----~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
...+...++|+| ++||+.|+++++.++..+.+|+.. .. .+.++++...+ ++.||+..+..
T Consensus 394 ~~~~~~~~LSGG---e~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 394 LYDREVNELSGG---ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp GTTSBGGGCCHH---HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhcCChhhCCHH---HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 445666889999 999999999999998887555443 22 23333322222 88999887653
No 253
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.42 E-value=1.6e-05 Score=95.32 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=34.4
Q ss_pred CCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
++.-.+.++.|..+.|+||+|+|||||++.+++.+.+.-++|.
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 3334455666677999999999999999999999988776654
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.38 E-value=0.00013 Score=81.60 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=51.5
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhc----cccc------------hhhhHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM----YIGE------------SEKNVRDIFQKA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~----~~Ge------------se~~vr~lf~~A 763 (958)
.|+.++.-++++||||+|||||+..++... +..++.++...-... ..|. .++.+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 377888899999999999999999998654 445555544321111 1121 112222222233
Q ss_pred HhcCCcEEEEcccccccC
Q 002159 764 RSARPCVIFFDELDSLAP 781 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~ 781 (958)
+...|.+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 456799999999999984
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.38 E-value=0.0001 Score=78.97 Aligned_cols=29 Identities=41% Similarity=0.686 Sum_probs=25.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSL 734 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~ 734 (958)
.+..+++||||||||||++|++||..+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44668999999999999999999997654
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.37 E-value=0.00063 Score=70.35 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~ 430 (958)
..+..++|+||||+|||||++.+++.+ +-.+..++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 445569999999999999999999764 445555543
No 257
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00019 Score=86.06 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=41.4
Q ss_pred hccccEEEEcCCCCHHHHHHHHHHhccCCcccCCCCCc-------H----HHHHHHhhhcCC---CChhhHHHHHH
Q 002159 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTSG---FMPRDLHALVA 602 (958)
Q Consensus 541 rrrf~~eIsig~Pde~qR~~Il~~ll~~~~~l~~D~~~-------~----~~L~~la~~t~G---fv~~DL~~Lv~ 602 (958)
..+...++|+| ++||+.|++++..+++.+.+|+.+ . ..+.+++..... ++.||+..+..
T Consensus 461 ~~~~~~~LSGG---qkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 461 IDQEVQHLSGG---ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp SSSBSSSCCHH---HHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hcCChhhCCHH---HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 44566889999 999999999999998888666543 1 233444332222 88999887643
No 258
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.28 E-value=0.00078 Score=75.89 Aligned_cols=137 Identities=18% Similarity=0.294 Sum_probs=78.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccccchhchHHHH---------------HHHHHHhhcCCCeEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIH--VVEYSCHNLMASSERKTSAAL---------------AQAFNTAQSYSPTIL 460 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~--~~~I~~~~l~s~~~g~~e~~l---------------~~~f~~A~~~~P~IL 460 (958)
..|+++|++||||+++++++....+.. ++.+||..+.... .+..+ ...|+.|. ...|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~---~~~~lfg~~~g~~tga~~~~~g~~~~a~---~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL---AESELFGHEKGAFTGALTRKKGKLELAD---QGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT---HHHHHHEECSCSSSSCCCCEECHHHHTT---TSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH---HHHHhcCccccccCCcccccCChHhhcC---CCeE
Confidence 359999999999999999998877543 9999998653221 11111 11344443 3689
Q ss_pred eecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCCC------
Q 002159 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE------ 534 (958)
Q Consensus 461 ~iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~~------ 534 (958)
|+||++.+... ....+...++.-. ....++. ......+.+|+|||...
T Consensus 227 fldei~~l~~~------------~Q~~Ll~~l~~~~-------~~~~g~~-------~~~~~~~rii~at~~~l~~~v~~ 280 (368)
T 3dzd_A 227 FLDEVGELDQR------------VQAKLLRVLETGS-------FTRLGGN-------QKIEVDIRVISATNKNLEEEIKK 280 (368)
T ss_dssp EEETGGGSCHH------------HHHHHHHHHHHSE-------ECCBTCC-------CBEECCCEEEEEESSCHHHHHHT
T ss_pred EecChhhCCHH------------HHHHHHHHHHhCC-------cccCCCC-------cceeeeeEEEEecCCCHHHHHHc
Confidence 99999988651 2223333332210 0001110 11134678999998642
Q ss_pred -CCChhhhccc-cEEEEcCCCCH--HHHHHHHHHhc
Q 002159 535 -GLPPTIRRCF-SHEISMGPLTE--QQRVEMLSQLL 566 (958)
Q Consensus 535 -~Ld~alrrrf-~~eIsig~Pde--~qR~~Il~~ll 566 (958)
.+.+++..|+ ...|.+|+..+ ++...++..++
T Consensus 281 g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l 316 (368)
T 3dzd_A 281 GNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFL 316 (368)
T ss_dssp TSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHH
T ss_pred CCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHH
Confidence 3344555443 34567776555 34455555554
No 259
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=2.1e-05 Score=94.30 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
++.-.+.++.|..+.|+||+|+|||||++.+++...+.-++|..
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 33334455666779999999999999999999999887776643
No 260
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.27 E-value=0.0013 Score=74.66 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=78.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccccch-------------hchHHHHHHHHHHhhcCCCeEEe
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSE-------------RKTSAALAQAFNTAQSYSPTILL 461 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg---~~~~~I~~~~l~s~~~-------------g~~e~~l~~~f~~A~~~~P~IL~ 461 (958)
.+|+++|++||||+++++++....+ .+|+.++|..+..... |... .....|+.|. ...+|
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~---~gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELAD---GGTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTT---TSEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCC---CcEEE
Confidence 4599999999999999999988764 5799999986532110 0000 0112344443 47999
Q ss_pred ecchhhhhhcccCCCCCCccccchHHHHHHHHHhcCCCCCccccccCCCCchhhhhhhhcCcEEEEEecCCC-------C
Q 002159 462 LRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------E 534 (958)
Q Consensus 462 iDeid~L~~~~s~~~~~~~~~~~~~~v~~~L~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~ViVIaaTn~~-------~ 534 (958)
+||++.+... ....+.++++.-. ....++. ......+.+|+|||.. .
T Consensus 237 ldei~~l~~~------------~q~~Ll~~l~~~~-------~~~~g~~-------~~~~~~~rii~at~~~l~~~~~~g 290 (387)
T 1ny5_A 237 LDEIGELSLE------------AQAKLLRVIESGK-------FYRLGGR-------KEIEVNVRILAATNRNIKELVKEG 290 (387)
T ss_dssp EESGGGCCHH------------HHHHHHHHHHHSE-------ECCBTCC-------SBEECCCEEEEEESSCHHHHHHTT
T ss_pred EcChhhCCHH------------HHHHHHHHHhcCc-------EEeCCCC-------ceeeccEEEEEeCCCCHHHHHHcC
Confidence 9999987641 2223333333210 0001111 1123568899999874 2
Q ss_pred CCChhhhccc-cEEEEcCCCCH--HHHHHHHHHhc
Q 002159 535 GLPPTIRRCF-SHEISMGPLTE--QQRVEMLSQLL 566 (958)
Q Consensus 535 ~Ld~alrrrf-~~eIsig~Pde--~qR~~Il~~ll 566 (958)
.+.+.+..|+ ...+.+|+..+ ++...|+..++
T Consensus 291 ~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l 325 (387)
T 1ny5_A 291 KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFL 325 (387)
T ss_dssp SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCCeecCCcchhccccHHHHHHHHH
Confidence 3445555443 45566665443 33344455444
No 261
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.27 E-value=7.1e-05 Score=89.97 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=36.8
Q ss_pred cCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.-.+.++.|..+.|+||+|+|||||++.+++...+.-++|..
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 455555666777779999999999999999999999888776643
No 262
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.26 E-value=0.00079 Score=69.19 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~ 432 (958)
+..+.-++|+||||+||||+++.+|+..+...+.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 345556999999999999999999986677777777653
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.25 E-value=0.00051 Score=72.59 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=27.0
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.+++.+.|.||||+|||||+++|++..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466788999999999999999999999875
No 264
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.21 E-value=0.0012 Score=69.14 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHH
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVA 418 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA 418 (958)
++.+.-++|.||||+|||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3455669999999999999999998
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.21 E-value=0.00028 Score=78.99 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.2
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+++++.-+.|+||||+|||||++.++...
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999999999987
No 266
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.19 E-value=1.7e-05 Score=95.08 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 388 CPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 388 ~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+.-.+.++.|..+.|+||+|+|||||++.+++.+.+.-++|..
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 3334455666679999999999999999999999888776643
No 267
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.18 E-value=0.00011 Score=80.24 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=33.3
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.-.+.++.|.-+.|.||||+|||||+|++++.+.+.-+.|..
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 97 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 334445566669999999999999999999988777776654
No 268
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.18 E-value=0.00028 Score=88.22 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.+..|..+.|+||||+|||||+|.+++.+.+.-++|..
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3445566669999999999999999999999888777754
No 269
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.17 E-value=0.00011 Score=88.24 Aligned_cols=44 Identities=25% Similarity=0.180 Sum_probs=35.2
Q ss_pred CCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
++.-.+.++.|..+.|+||+|+|||||++.+++...+.-++|..
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 34444556677779999999999999999999998887776643
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.00062 Score=69.33 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.1
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.|+||||+|||||++.|++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 568999999999999999999976
No 271
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.16 E-value=0.00029 Score=79.00 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=52.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhh----ccccc-----------hhhhHHHHHH-HH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN----MYIGE-----------SEKNVRDIFQ-KA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~----~~~Ge-----------se~~vr~lf~-~A 763 (958)
.|+.++.-++++||||+|||+||..++..+ +..++.++..+... ...|. +...+..+++ .+
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 368888899999999999999999998764 45666665522111 11111 1122333333 23
Q ss_pred HhcCCcEEEEcccccccC
Q 002159 764 RSARPCVIFFDELDSLAP 781 (958)
Q Consensus 764 ~~~~P~ILfiDEiD~l~~ 781 (958)
+...+.+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 456789999999999985
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00064 Score=67.62 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeeccch
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 743 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~ 743 (958)
+.-|+|.|+||+||||++++++..++.+++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 356899999999999999999999998888765443
No 273
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.15 E-value=0.00056 Score=74.81 Aligned_cols=115 Identities=13% Similarity=0.219 Sum_probs=63.9
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCceeeeccchhhh----ccccc--------hhhhHHHH-HHH--
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELIN----MYIGE--------SEKNVRDI-FQK-- 762 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~i~v~~~~l~~----~~~Ge--------se~~vr~l-f~~-- 762 (958)
-|+.++ .++++||||+|||+|+-.++..+ +..++.++..+-.. .-+|- .+....++ +..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 467777 79999999999999987776543 45566666543221 11111 11123333 222
Q ss_pred ----HHhcCCcEEEEcccccccCCCCCC---CCCc-c--hHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 763 ----ARSARPCVIFFDELDSLAPARGAS---GDSG-G--VMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 763 ----A~~~~P~ILfiDEiD~l~~~r~~~---~~~~-~--~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
.+..+|.+|+||-+..+.+...-. +++. + ...|.+++.|..|.++.. ..++.||.+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak-~~~i~vi~t 168 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFS-TKNIPCIAI 168 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHH-HhCCEEEEE
Confidence 245689999999999998642211 1110 1 234667777666543322 234444433
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.14 E-value=0.0003 Score=75.48 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=48.1
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCCc---eeeeccchh--h---------hccccchhhhHHHHHHHHHhcCCcE
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSLN---FLSVKGPEL--I---------NMYIGESEKNVRDIFQKARSARPCV 770 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~~---~i~v~~~~l--~---------~~~~Gese~~vr~lf~~A~~~~P~I 770 (958)
+.++.-+++.||+|+||||+++++++..... -+.+.+..+ . ...+|.....++..+..+-...|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 5677889999999999999999999876321 122222111 0 0111212235677777777779999
Q ss_pred EEEccc
Q 002159 771 IFFDEL 776 (958)
Q Consensus 771 LfiDEi 776 (958)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999997
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.00025 Score=72.50 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
...+..|+|+|++||||||+++.+|+.+|..++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34455699999999999999999999999877654
No 276
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.12 E-value=0.00029 Score=78.00 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=52.2
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---------CCceeeeccchh---------hhc------------cccc-
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPEL---------INM------------YIGE- 751 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---------~~~~i~v~~~~l---------~~~------------~~Ge- 751 (958)
.|++++.-++++||||+|||+|+..+|..+ +...+.++.... ... ++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 477888899999999999999999999875 345555554331 000 0000
Q ss_pred --hh---hhHHHHHHHHHh-cCCcEEEEcccccccC
Q 002159 752 --SE---KNVRDIFQKARS-ARPCVIFFDELDSLAP 781 (958)
Q Consensus 752 --se---~~vr~lf~~A~~-~~P~ILfiDEiD~l~~ 781 (958)
.+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122334444555 7789999999999874
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.12 E-value=0.00031 Score=70.14 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.8
Q ss_pred CCCCCCcEEEecCCCChhHHHHHH
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKA 727 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLaka 727 (958)
.+.++.-++|.||||+|||||+++
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 455678899999999999999993
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.11 E-value=0.00059 Score=77.64 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=50.0
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---------CCceeeeccchhhh--------c-------------cccc-
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELIN--------M-------------YIGE- 751 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---------~~~~i~v~~~~l~~--------~-------------~~Ge- 751 (958)
.|+.++.-++|+||||+|||||++.++-.. +...+.+++.+... . ++..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 478889999999999999999999776332 23355555433110 0 1110
Q ss_pred --h---hhhHHHHHHHHHhcCCcEEEEcccccccCC
Q 002159 752 --S---EKNVRDIFQKARSARPCVIFFDELDSLAPA 782 (958)
Q Consensus 752 --s---e~~vr~lf~~A~~~~P~ILfiDEiD~l~~~ 782 (958)
. ...+..+...+....|.+|+||++-.+...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 112233334444578999999999888753
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.0003 Score=71.92 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.8
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
..+.++..|+|.|||||||||++++||..++..++..+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34566788999999999999999999999999887654
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.00032 Score=70.69 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
.+.++.-++|.||||+||||++++|++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45667789999999999999999999987777777766554
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.0021 Score=67.24 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=29.7
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeec
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVK 740 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~ 740 (958)
..|+.++.-++++||||+|||+|+..++... +..++.++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578888999999999999999988876543 44444443
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.00 E-value=0.00049 Score=74.37 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.8
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.++.-+.|.||||+|||||+++|++..
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456778899999999999999999999866
No 283
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.99 E-value=0.00074 Score=75.70 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=48.5
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcC----Cceeeeccc-hhh---------hccccchhhhHHHHHHHHHhcCCcEE
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGP-ELI---------NMYIGESEKNVRDIFQKARSARPCVI 771 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~----~~~i~v~~~-~l~---------~~~~Gese~~vr~lf~~A~~~~P~IL 771 (958)
.++..+++.||+|+||||+++++++.+. ..++.+..+ ++. ...++.....+...+..|-...|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4455799999999999999999998763 333333221 111 01122222356678888888999999
Q ss_pred EEccc
Q 002159 772 FFDEL 776 (958)
Q Consensus 772 fiDEi 776 (958)
++||.
T Consensus 201 llDEp 205 (356)
T 3jvv_A 201 LVGEM 205 (356)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99997
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.97 E-value=0.00034 Score=70.53 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~ 431 (958)
++.+..++|.||||+||||+++.+++.++...+.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 34556699999999999999999999866556666543
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00043 Score=68.44 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 378 ILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 378 ~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.....++..+.++.. +.|.||+|+|||||+|++++.+ +.-+.|
T Consensus 21 ~~l~~vsl~i~~Ge~-------v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 21 FAEILLKLHTEKAIM-------VYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HHHHHHHHCCSSCEE-------EEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred HHHhccccccCCCCE-------EEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 445556666666665 9999999999999999999998 544443
No 286
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.00061 Score=76.04 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=51.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc---------CCceeeeccchhhh-----c---cccc--------------
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELIN-----M---YIGE-------------- 751 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~---------~~~~i~v~~~~l~~-----~---~~Ge-------------- 751 (958)
.|++++.-++|+||||+|||+|+..+|..+ +...+.++....+. . ..|.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 478888889999999999999999999873 33455554432100 0 0110
Q ss_pred --hh---hhHHHHHHHHHh--cCCcEEEEcccccccC
Q 002159 752 --SE---KNVRDIFQKARS--ARPCVIFFDELDSLAP 781 (958)
Q Consensus 752 --se---~~vr~lf~~A~~--~~P~ILfiDEiD~l~~ 781 (958)
.+ ..+..+.+.++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112223344555 6789999999999874
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.95 E-value=0.00067 Score=72.94 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.9
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.+++-+.|.||||+|||||+++|++..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456778899999999999999999999865
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.93 E-value=0.00055 Score=67.78 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..|+|+|||||||||+++.+|+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 345999999999999999999999987544
No 289
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.92 E-value=0.00076 Score=76.04 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=27.0
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+.+.++.-+.|.||||||||||+|+||+..
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 456778889999999999999999999976
No 290
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.91 E-value=0.0037 Score=69.36 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=85.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC---C-ceeeeccchhhhccccchhhhHHHHHHHHHh----cCCcEEEEccccc-
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS---L-NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDS- 778 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~---~-~~i~v~~~~l~~~~~Gese~~vr~lf~~A~~----~~P~ILfiDEiD~- 778 (958)
...++||||+|.||++.++.++..+. . ++..+. +-| +..++++++.+.. ....|++|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 45799999999999999999988652 1 111111 111 2456777766653 4467999999987
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC------CCChhhcCcCCccceeeccCCCCHHHHH
Q 002159 779 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD------LIDPALLRPGRFDKLLYVGVNSDVSYRE 852 (958)
Q Consensus 779 l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~------~ldpaLlrpgRfd~~I~v~~ppd~~~r~ 852 (958)
+.. ...+.|+..++... ...++|++ |+.++ .+-+++.. |.. .+.+.. ++..+..
T Consensus 89 l~~-------------~~~~aLl~~le~p~--~~~~~il~-~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~-l~~~~l~ 148 (343)
T 1jr3_D 89 PNA-------------AINEQLLTLTGLLH--DDLLLIVR-GNKLSKAQENAAWFTALAN--RSV-QVTCQT-PEQAQLP 148 (343)
T ss_dssp CCT-------------THHHHHHHHHTTCB--TTEEEEEE-ESCCCTTTTTSHHHHHHTT--TCE-EEEECC-CCTTHHH
T ss_pred CCh-------------HHHHHHHHHHhcCC--CCeEEEEE-cCCCChhhHhhHHHHHHHh--Cce-EEEeeC-CCHHHHH
Confidence 531 24566777777542 23445554 44433 35567776 663 566664 5666677
Q ss_pred HHHHHHHhhccCCC-CcCHHHHHhh
Q 002159 853 RVLKALTRKFKLLE-DVSLYSIAKK 876 (958)
Q Consensus 853 ~Il~~~~~~~~~~~-d~~l~~la~~ 876 (958)
.+++...+...+.- +..+..+++.
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~ 173 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYC 173 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777766544321 2234556655
No 291
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.90 E-value=0.00042 Score=76.93 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=54.0
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccchhhh-----c---cccchhhhHHHHHHHHHhcCCcEE
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELIN-----M---YIGESEKNVRDIFQKARSARPCVI 771 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~~l~~-----~---~~Gese~~vr~lf~~A~~~~P~IL 771 (958)
+..+.++..+++.||+|+|||||+++|++.... ..+.+.+...+. . ++.+.....+..+..|....|.+|
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEE
Confidence 345567889999999999999999999998743 244554432111 1 221123466778888888999999
Q ss_pred EEcccc
Q 002159 772 FFDELD 777 (958)
Q Consensus 772 fiDEiD 777 (958)
++||.-
T Consensus 245 ildE~~ 250 (330)
T 2pt7_A 245 ILGELR 250 (330)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999974
No 292
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.001 Score=74.43 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=27.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+..+.++.-+.|.||||||||||+++||+..
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3466778889999999999999999999966
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.88 E-value=0.0008 Score=66.91 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
..|+|.|++|+||||+++.++..++..++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999987776654
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.84 E-value=0.00038 Score=74.63 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=43.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc---ccc--------chhchHHHHHHHHHHhhcCCCeEEee
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNL---MAS--------SERKTSAALAQAFNTAQSYSPTILLL 462 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~---~~~I~~~~l---~s~--------~~g~~e~~l~~~f~~A~~~~P~IL~i 462 (958)
+..++|.||+|+||||+++++++.+.+. -+.+....+ ... ..+.....++..+..+....|.++++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3349999999999999999999987433 222222111 000 00001123455666666678999999
Q ss_pred cchh
Q 002159 463 RDFD 466 (958)
Q Consensus 463 Deid 466 (958)
||..
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9973
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.002 Score=66.63 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL 421 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l 421 (958)
+.+.-++|+||||+|||||++.+++.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445559999999999999999999965
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.82 E-value=0.00065 Score=68.10 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|+|++||||||+++.+|..+|..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999887754
No 297
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.82 E-value=0.00039 Score=70.52 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhcc--------ccc-----hhhhHHHHHHHHHhcCCcEE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY--------IGE-----SEKNVRDIFQKARSARPCVI 771 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~--------~Ge-----se~~vr~lf~~A~~~~P~IL 771 (958)
+.-++++||+|+||||++..++... +.+++.++.. +-..| .|. .-....++++.+. ..+.+|
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~-~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvv 80 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-IDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGV 80 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec-cccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEE
Confidence 4457899999999999986665543 4444443221 10111 110 0012233333332 245799
Q ss_pred EEcccccc
Q 002159 772 FFDELDSL 779 (958)
Q Consensus 772 fiDEiD~l 779 (958)
+|||+..+
T Consensus 81 iIDE~Q~~ 88 (184)
T 2orw_A 81 FIDEVQFF 88 (184)
T ss_dssp EECCGGGS
T ss_pred EEECcccC
Confidence 99999876
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00072 Score=66.93 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=27.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
+..|+|+|||||||||+++.+|+.++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4579999999999999999999999876654
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.81 E-value=0.0015 Score=70.34 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
++.++.-++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56678889999999999999999998754
No 300
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.80 E-value=0.00012 Score=95.30 Aligned_cols=44 Identities=32% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
++.-.+.+++|..+.|+||+|+|||||++++++...+.-++|..
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i 449 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSI 449 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEE
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 34444556677779999999999999999999999888776643
No 301
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.79 E-value=0.0023 Score=79.93 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=58.6
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc-----CCce----e----------eeccchhhhccccchhhhHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNF----L----------SVKGPELINMYIGESEKNVRDIFQKA 763 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~-----~~~~----i----------~v~~~~l~~~~~Gese~~vr~lf~~A 763 (958)
..+.++.-++|+||||+||||++|.++... +..+ . .+...+............++++...+
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence 355667889999999999999999997532 2110 0 01111111111111111222222222
Q ss_pred H-hcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCC
Q 002159 764 R-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 827 (958)
Q Consensus 764 ~-~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ld 827 (958)
+ ...|++|++||.-+-. + ......+...++..+-. ..+..+|.+|...+...
T Consensus 748 ~~a~~p~LlLLDEP~~Gl-------D-~~~~~~i~~~il~~L~~----~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 748 RKATSQSLVILDELGRGT-------S-THDGIAIAYATLEYFIR----DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHCCTTCEEEEESTTTTS-------C-HHHHHHHHHHHHHHHHH----TTCCEEEEECSCGGGGG
T ss_pred HhccCCCEEEEeCCCCCC-------C-HHHHHHHHHHHHHHHHH----hcCCeEEEEeCcHHHHH
Confidence 2 4678999999963222 1 11123444466665521 12456777888876554
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.002 Score=67.22 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecCccccc---------c--------------hhchH
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARR--L-------GIHVVEYSCHNLMAS---------S--------------ERKTS 442 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~--l-------g~~~~~I~~~~l~s~---------~--------------~g~~e 442 (958)
..+.-++|+||||+|||||++.+|+. + +...+.++..+.... . .....
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 45556999999999999999999995 3 345677776541100 0 00011
Q ss_pred ----HHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 443 ----AALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 443 ----~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
..+..+.+......|.+++||++..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1122233334446799999999988764
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.00071 Score=67.82 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.7
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
+..|+|+||+||||||+++.+|..++..|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999888654
No 304
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0085 Score=60.21 Aligned_cols=141 Identities=23% Similarity=0.376 Sum_probs=91.5
Q ss_pred ceEEeecHhhhhhccccc--c-ceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccc
Q 002159 93 SALLGLSTCVLKQLSVTS--G-SLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDME 169 (958)
Q Consensus 93 ~~~v~l~~~~l~~l~~~~--g-~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (958)
.-=|.|+.|+|.+|.=.+ + =.-.|+|. ...|.+.|=||+=
T Consensus 40 GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~--~~~r~th~GVlEF----------------------------------- 82 (190)
T 2yuj_A 40 GGKIIMPPSALDQLSRLNITYPMLFKLTNK--NSDRMTHCGVLEF----------------------------------- 82 (190)
T ss_dssp TTEEECCHHHHHHHHHTTCCSSCEEEEEET--TTTEEEEEEEEEC-----------------------------------
T ss_pred CCeEECcHHHHHHHHHCCCCcCeEEEEecC--CCCceEEEEEEEE-----------------------------------
Confidence 346889999999875331 1 12235553 3457777777642
Q ss_pred cccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceeEEEEEecCCCCCcceeeEEEeee
Q 002159 170 LLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVK 249 (958)
Q Consensus 170 ~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~rv~~~~ 249 (958)
.-+++.+||++-+|.||++..|+ .|.|..+ .+| -|+.++++
T Consensus 83 sA~EG~i~lP~wmm~~L~l~~gd----------------------------------~V~v~~~-~LP-kgt~vklq--- 123 (190)
T 2yuj_A 83 VADEGICYLPHWMMQNLLLEEGG----------------------------------LVQVESV-NLQ-VATYSKFQ--- 123 (190)
T ss_dssp CCBTTBEECCSHHHHHHTCCTTE----------------------------------EEEEEEE-CCC-CCSEEEEE---
T ss_pred ecCCCeEEeCHHHHHhcCCCCCC----------------------------------EEEEEEe-ecC-CCcEEEEE---
Confidence 12467789999999999999874 2223322 453 56765653
Q ss_pred cCCCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEE
Q 002159 250 IPECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAV 329 (958)
Q Consensus 250 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~ 329 (958)
|....+ .+-.+.+.+++..|++|- .|.+||+|.|.. +....+|+|.++
T Consensus 124 -P~~~~F--------l~i~npKavLE~~Lrnfs----tLT~Gd~I~I~~-------------------~~~~y~l~V~e~ 171 (190)
T 2yuj_A 124 -PQSPDF--------LDITNPKAVLENALRNFA----CLTTGDVIAINY-------------------NEKIYELRVMET 171 (190)
T ss_dssp -ESSHHH--------HHSSCHHHHHHHHHTTCC----EECTTCEEEEES-------------------SSCEEEEEEEEE
T ss_pred -ECCccc--------cccccHHHHHHHHHhcCc----ccccCCEEEEEe-------------------CCEEEEEEEEEE
Confidence 332211 123345778888888533 599999999985 357899999999
Q ss_pred ecCCCeEEEEcCC
Q 002159 330 EPSEETVLRVNCT 342 (958)
Q Consensus 330 ~~~~~~~~~vd~~ 342 (958)
+|++ .+.++|+.
T Consensus 172 kP~~-aV~IidTD 183 (190)
T 2yuj_A 172 KPDK-AVSIIECD 183 (190)
T ss_dssp SSSS-SEECSSCC
T ss_pred cCCC-eEEEEeCC
Confidence 9964 56666543
No 305
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.76 E-value=0.0015 Score=73.12 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=26.9
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.++.-+.|.||||||||||+++||+..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 456778889999999999999999999866
No 306
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.76 E-value=0.0017 Score=73.15 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccchhchHHHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~l~s~~~g~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
.++.+..++|+||||+||||+++++++.++..++.++.+. ......+.. .....++++|+++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~------~~~~~~lg~------~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL------DRLNFELGV------AIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT------TTHHHHHGG------GTTCSCEEETTCCCSTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc------hhHHHHHHH------hcchhHHHHHHHHHHHH
Confidence 4556667999999999999999999999876655433321 011111222 12346679999998764
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.75 E-value=0.00073 Score=68.10 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH-hCCcEEE
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARR-LGIHVVE 427 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~-lg~~~~~ 427 (958)
..+..|+|+|++||||||+++.++.. +|..++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 44567999999999999999999999 6765554
No 308
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.0014 Score=73.39 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.8
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
..+.++.-+.|.||||||||||+|+||+..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456778889999999999999999999876
No 309
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.73 E-value=0.0013 Score=73.41 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=26.6
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+.+.++.-+.|.||||||||||+|+||+..
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356678889999999999999999999876
No 310
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.71 E-value=0.0016 Score=73.26 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
++.+.++.-+.|.||||||||||+|+||+..
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3466778889999999999999999999866
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.71 E-value=0.0011 Score=67.53 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~ 432 (958)
.+..|+|.|||||||||+++.+++.+|.. .+++.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEcccc
Confidence 34569999999999999999999999753 444443
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.70 E-value=0.0016 Score=73.47 Aligned_cols=73 Identities=25% Similarity=0.455 Sum_probs=48.7
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcC----Cceeeeccc-hhh-h---ccccc-----hhhhHHHHHHHHHhcCCc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGP-ELI-N---MYIGE-----SEKNVRDIFQKARSARPC 769 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~----~~~i~v~~~-~l~-~---~~~Ge-----se~~vr~lf~~A~~~~P~ 769 (958)
.+.++..++++||+|+||||+++++++.+. ..++.+..+ ++. . .++.+ ....++..+..+-...|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 356677899999999999999999998763 233332211 110 0 01212 233456677777778999
Q ss_pred EEEEccc
Q 002159 770 VIFFDEL 776 (958)
Q Consensus 770 ILfiDEi 776 (958)
+|++||+
T Consensus 212 ~illdE~ 218 (372)
T 2ewv_A 212 VIFVGEM 218 (372)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999997
No 313
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=96.69 E-value=0.0039 Score=54.41 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=39.2
Q ss_pred HHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEcCCceEEEE
Q 002159 274 IDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVL 348 (958)
Q Consensus 274 ~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~l~~ 348 (958)
+..+|+++|.. |||.+||+|.|++- ++.+.|+|++++|+ .++ | +..|.+.+
T Consensus 29 ~~~~lk~~L~g-rPV~~GD~I~i~~~-------------------G~~i~F~Vv~t~P~--~V~-V-t~~T~I~i 79 (83)
T 2jv2_A 29 FVDVIRIKLQG-KTVRTGDVIGISIL-------------------GKEVKFKVVQAYPS--PLR-V-EDRTKITL 79 (83)
T ss_dssp HHHHHHHHHTT-SEECTTCEEEEEET-------------------TEEEEEEEEEEESS--SEE-C-CTTSEEEE
T ss_pred HHHHHHHHHCC-CCccCCCEEEEeeC-------------------CCEEEEEEEEecCc--cEE-E-CCCcEEEE
Confidence 47899999975 99999999999862 37899999999996 332 3 34455554
No 314
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.0023 Score=67.93 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
.+..|+|.|+||+||||+++.|+..++..++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35679999999999999999999999876777776655
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.68 E-value=0.0011 Score=66.83 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=29.9
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+.++.-|+|.|+||+||||+++.++..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44566799999999999999999999998877653
No 316
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.65 E-value=0.0018 Score=72.52 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=27.5
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
++.+.++.-+.|.||||+|||||+|+|++..
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3467788999999999999999999999866
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.65 E-value=0.0011 Score=65.12 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
.|+|.|++||||||+++.++..+|.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3899999999999999999999998776544
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.62 E-value=0.0013 Score=69.85 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~~~ 432 (958)
...+..|+|.|+|||||||+++.++..++...+.++...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 455678999999999999999999999986556666544
No 319
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.62 E-value=0.0015 Score=73.50 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
..+.++.-+.|.||||||||||+|+||+...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3566788899999999999999999998763
No 320
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.60 E-value=0.00018 Score=93.68 Aligned_cols=45 Identities=29% Similarity=0.283 Sum_probs=36.3
Q ss_pred cCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.-.+.+++|..+.|+||+|+|||||++++++...+.-++|..
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 344445556778889999999999999999999998887776643
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.60 E-value=0.0018 Score=70.33 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 374 ~~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
+..+.+..++..++... .....+.-|+|.||||+||||+++.++.+++...+.|++
T Consensus 11 ~~~~~~~~~~~~~l~~~-~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGK-KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHhccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 44556666665555432 223446779999999999999999999998555666765
No 322
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.60 E-value=0.00056 Score=71.85 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=32.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 3444555569999999999999999999998887777754
No 323
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.60 E-value=0.006 Score=68.18 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=49.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------chhchHHHHHHHHHHhhcC
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMAS----------------SERKTSAALAQAFNTAQSY 455 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~----------------~~g~~e~~l~~~f~~A~~~ 455 (958)
..+.-++|+||||+|||||+..++..+ +-.++.++....... .....+..+..+.......
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 455569999999999999999999875 556777776542210 0111222232222233346
Q ss_pred CCeEEeecchhhhhh
Q 002159 456 SPTILLLRDFDVFRN 470 (958)
Q Consensus 456 ~P~IL~iDeid~L~~ 470 (958)
.+.++++|.+..+.+
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 788999999988764
No 324
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.60 E-value=0.0028 Score=63.04 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.4
Q ss_pred CCCceEEEEcCCCChHHHHHH
Q 002159 395 KFRVAVLLHGLPGCGKRTVVR 415 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLar 415 (958)
..|.-++|+||||||||||++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 445559999999999999999
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.58 E-value=0.0016 Score=64.72 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..++|.|+||+||||+++.+++.+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456999999999999999999999876443
No 326
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.57 E-value=0.033 Score=57.98 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=66.1
Q ss_pred CcEEEecCCCChhHHHHHHHHHHc---CCceeeeccc--------hhhhc----------cccc--hhhhHHHHHHHHHh
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP--------ELINM----------YIGE--SEKNVRDIFQKARS 765 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~--------~l~~~----------~~Ge--se~~vr~lf~~A~~ 765 (958)
-+|++.|++|+||||++-.+|..+ |..+..+... .+... |.|. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 468999999999999999888765 5554433221 11111 1111 1233333332
Q ss_pred cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC------------------CCCC
Q 002159 766 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP------------------DLID 827 (958)
Q Consensus 766 ~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp------------------~~ld 827 (958)
..|.++++||+-....... ..... -..+..+ +. .++=|++|+|-- +.++
T Consensus 83 ~~pdlvIVDElG~~~~~~~---r~~~~-~qDV~~~---l~------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGS---RHTKR-WQDIQEL---LA------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTTC---SSSBH-HHHHHHH---HH------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCcccc---hhHHH-HHHHHHH---Hc------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 4689999999876422211 11111 1112221 11 234466777721 3455
Q ss_pred hhhcCcCCccceeeccCCCC
Q 002159 828 PALLRPGRFDKLLYVGVNSD 847 (958)
Q Consensus 828 paLlrpgRfd~~I~v~~ppd 847 (958)
..++. +-|.+..+.+||+
T Consensus 150 d~~~~--~a~~v~lvD~~p~ 167 (228)
T 2r8r_A 150 DWVLQ--EAFDLVLIDLPPR 167 (228)
T ss_dssp HHHHH--TCSEEEEBCCCHH
T ss_pred cHHHh--hCCeEEEecCCHH
Confidence 66666 7888889998664
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0028 Score=64.57 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHN 432 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~ 432 (958)
+..|.|.||+||||||+++.+++.+ |...+.++..+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 4459999999999999999999998 55544565443
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.54 E-value=0.0014 Score=65.53 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=29.8
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
..+..|+|+|+||+||||+++.++..++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998887755
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.54 E-value=0.0019 Score=64.99 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.+.-|+|.|+||+||||+++.++..+|..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34569999999999999999999999876554
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0013 Score=69.99 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 378 ILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 378 ~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.+...++..+.+-. .+..|.|.|++||||||+++.+|+.+|..++..
T Consensus 33 ~~l~~~~~~i~~~l----~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 33 QILKKKAEEVKPYL----NGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HHHHHHHHTTHHHH----TTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhhhhhhhhc----CCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34455555554400 033499999999999999999999999876653
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.51 E-value=0.0013 Score=66.18 Aligned_cols=35 Identities=40% Similarity=0.602 Sum_probs=29.5
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHH-cCCceeeec
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATE-CSLNFLSVK 740 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~-~~~~~i~v~ 740 (958)
.++..|+|+|++||||||+++.++.. ++.+++..+
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 34567999999999999999999999 687776543
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.51 E-value=0.0026 Score=71.20 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=44.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-cc--------cc-cchhchHHHHHHHHHHhhcCCCeEEeecc
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLG----IHVVEYSCH-NL--------MA-SSERKTSAALAQAFNTAQSYSPTILLLRD 464 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg----~~~~~I~~~-~l--------~s-~~~g~~e~~l~~~f~~A~~~~P~IL~iDe 464 (958)
.+++.||+||||||+++++++.+. -+++.+.-+ ++ +. ...+.....+...+..+....|.++++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 399999999999999999999874 334433221 11 00 00111112344566777778999999999
Q ss_pred hh
Q 002159 465 FD 466 (958)
Q Consensus 465 id 466 (958)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.51 E-value=0.0017 Score=64.66 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.|+|.|+|||||||+++.+|..+|..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999976654
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.50 E-value=0.0008 Score=72.54 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=32.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 3445555669999999999999999999998887777653
No 335
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.49 E-value=0.0013 Score=67.47 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHV 425 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~ 425 (958)
+...++++||||||||||++.++|+.++-.+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3345799999999999999999999986443
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.48 E-value=0.00058 Score=72.10 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.++.|..+.|.||||+|||||+|++++.+.+.-++|..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3344555569999999999999999999988766666643
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.48 E-value=0.0016 Score=64.07 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
-|+|.||+|+||||+++.++..++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998887554
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.48 E-value=0.0015 Score=65.45 Aligned_cols=30 Identities=40% Similarity=0.736 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.|+|.|+|||||||+++.++..+|..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 499999999999999999999999876643
No 339
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.47 E-value=0.0024 Score=65.57 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSC 430 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg---~~~~~I~~ 430 (958)
+.+.-|.|.||||+|||||++.+++.+. .....+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 4455699999999999999999999985 34555543
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0018 Score=64.72 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|+|++|+||||+++.++..+|..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998766543
No 341
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0014 Score=72.20 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.1
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATE 731 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~ 731 (958)
.|++++.-++++||||+|||+|+..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47788888999999999999999999875
No 342
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.0017 Score=66.27 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=26.9
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCcee
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL 737 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i 737 (958)
.++.-++|.||||+||||++++|++.+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 34677999999999999999999999865544
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.44 E-value=0.0017 Score=64.67 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=27.3
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.||||+||||++++||..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887753
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.43 E-value=0.0011 Score=73.66 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-----c---chhchHHHHHHH
Q 002159 379 LASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--VVEYSCHNLMA-----S---SERKTSAALAQA 448 (958)
Q Consensus 379 L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~--~~~I~~~~l~s-----~---~~g~~e~~l~~~ 448 (958)
+...++..+.++.. +++.||+|+||||+++++++.+.+. .+.++...... . +........+..
T Consensus 160 ~l~~l~~~i~~g~~-------v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~ 232 (330)
T 2pt7_A 160 AISAIKDGIAIGKN-------VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADC 232 (330)
T ss_dssp HHHHHHHHHHHTCC-------EEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHH
T ss_pred HHhhhhhhccCCCE-------EEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHH
Confidence 44555555555555 9999999999999999999988653 45555432111 0 000011234455
Q ss_pred HHHhhcCCCeEEeecchh
Q 002159 449 FNTAQSYSPTILLLRDFD 466 (958)
Q Consensus 449 f~~A~~~~P~IL~iDeid 466 (958)
+..|....|.++++||..
T Consensus 233 la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 233 LKSCLRMRPDRIILGELR 250 (330)
T ss_dssp HHHHTTSCCSEEEECCCC
T ss_pred HHHHhhhCCCEEEEcCCC
Confidence 566667789999999964
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.42 E-value=0.0018 Score=64.87 Aligned_cols=30 Identities=37% Similarity=0.573 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..|+|.|+|||||||+++.++..+|..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 345999999999999999999999986544
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.42 E-value=0.0017 Score=64.04 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
..|+|.|++||||||+++.+|..+|..++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3599999999999999999999999877654
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.42 E-value=0.0047 Score=65.91 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=30.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHH---cCCceeeeccchhh
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATE---CSLNFLSVKGPELI 745 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~---~~~~~i~v~~~~l~ 745 (958)
+.-|+|.|+||+||||+++.++.. .|..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446899999999999999999997 67787756655544
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.41 E-value=0.0014 Score=65.61 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=28.2
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
++..|+|.|+||+||||+++.++..++..++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 345699999999999999999999998776654
No 349
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.40 E-value=0.0058 Score=76.53 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.5
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVAT 730 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~ 730 (958)
..+.++.-++|+||||+||||++|.++.
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455677899999999999999999954
No 350
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.39 E-value=0.0019 Score=64.02 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=27.2
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
++..++|.||||+||||+++.+++.+|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 35679999999999999999999998765554
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.38 E-value=0.0018 Score=68.32 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~ 423 (958)
+.+.-|.|.||+|+||||+++.+++.+|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 33444999999999999999999998874
No 352
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.37 E-value=0.0018 Score=63.87 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=27.8
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+..+.++.-+.|.||+|+|||||+|+|++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466788889999999999999999999987
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.37 E-value=0.0019 Score=64.65 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=28.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
..|+|.|+||+||||+++.|+..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998887643
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.36 E-value=0.0044 Score=67.24 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=30.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
+.-++|.||||+||||+++.++.+++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4568999999999999999999998656666765444
No 355
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.36 E-value=0.011 Score=64.66 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~ 430 (958)
.+.+.-++++|+||+||||+++.+|+.+ |..+..+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4566789999999999999999999876 444555544
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.0026 Score=64.75 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.-|+|.|++|+||||+++.+++.+|..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 459999999999999999999999876554
No 357
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.36 E-value=0.0062 Score=68.02 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=48.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----------------hhchHHHHHHHHHHhhcC
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----------------ERKTSAALAQAFNTAQSY 455 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~----------------~g~~e~~l~~~f~~A~~~ 455 (958)
..+.-++|+||||+|||||+..++... |-....++...-.... ....+..+..+.......
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 455669999999999999999988764 5566667654321100 001122233233333456
Q ss_pred CCeEEeecchhhhhh
Q 002159 456 SPTILLLRDFDVFRN 470 (958)
Q Consensus 456 ~P~IL~iDeid~L~~ 470 (958)
.|.+++||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999998863
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.36 E-value=0.0034 Score=68.70 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=28.4
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
+-.+..+.+.-++|+||||+||||+++.+|+.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3344456778899999999999999999999874
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.35 E-value=0.0024 Score=65.02 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
..+..|+|.|+|||||||+++.++..+|..++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3345699999999999999999999999876544
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.0027 Score=65.65 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.+..|+|.|+|||||||+++.+|..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34569999999999999999999999876544
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.32 E-value=0.0043 Score=63.24 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchh
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 744 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l 744 (958)
..++.-|.|.||+|+||||++++|++.+ |...+.+++.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3557789999999999999999999988 443335555444
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0023 Score=68.12 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
-++|.|||||||||+++.+|+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37999999999999999999999987776654
No 363
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.31 E-value=0.0027 Score=64.97 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.+.-|.|.||+|||||||++.+++.++..+..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 44569999999999999999999998854555544
No 364
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.30 E-value=0.002 Score=66.99 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~l 421 (958)
.++.|.-+.|+||+|+|||||++.+++..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455569999999999999999999987
No 365
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.29 E-value=0.0022 Score=68.21 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=28.9
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeecc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKG 741 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~ 741 (958)
-+++.||||+||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887764
No 366
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.29 E-value=0.0021 Score=66.00 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
+..+.-+.|.||||+|||||++++++.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555699999999999999999999874
No 367
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.29 E-value=0.011 Score=69.76 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=66.2
Q ss_pred hhc-CCCCCCcEEEecCCCChhHHHHHH--HHHHc--CCceeeeccchhhh------cccc---c---------------
Q 002159 701 FSS-GLRKRSGVLLYGPPGTGKTLLAKA--VATEC--SLNFLSVKGPELIN------MYIG---E--------------- 751 (958)
Q Consensus 701 ~~~-~i~~~~~iLL~GppGtGKTtLaka--iA~~~--~~~~i~v~~~~l~~------~~~G---e--------------- 751 (958)
... ++.++.-++|.||||+|||||++. +++.. +...+.+.+.+... ..+| +
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~ 110 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASP 110 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCC
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCc
Confidence 344 678899999999999999999999 55654 23344444322100 0000 0
Q ss_pred ------------hhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEe
Q 002159 752 ------------SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 819 (958)
Q Consensus 752 ------------se~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~a 819 (958)
-+..............|.+|+|||.-.+.+.- + ......+.+..++..+.. .++.||.+
T Consensus 111 ~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~---~-lD~~~~~~l~~ll~~l~~-----~g~tvl~i 181 (525)
T 1tf7_A 111 DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY---D-ASSVVRRELFRLVARLKQ-----IGATTVMT 181 (525)
T ss_dssp CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT---C-CHHHHHHHHHHHHHHHHH-----HTCEEEEE
T ss_pred ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc---C-CHHHHHHHHHHHHHHHHH-----CCCEEEEE
Confidence 01112233334445678999999997765431 0 011223445555555532 24456677
Q ss_pred cCCCCCC
Q 002159 820 SNRPDLI 826 (958)
Q Consensus 820 TNrp~~l 826 (958)
|.+.+.+
T Consensus 182 tH~~~~~ 188 (525)
T 1tf7_A 182 TERIEEY 188 (525)
T ss_dssp EECSSSS
T ss_pred ecCCCCc
Confidence 7777764
No 368
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.28 E-value=0.018 Score=58.65 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeee---ccc------hhhhcc-----------c--c----chhhhHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSV---KGP------ELINMY-----------I--G----ESEKNVRD 758 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v---~~~------~l~~~~-----------~--G----ese~~vr~ 758 (958)
...|++|+++|.||||+|-++|-.. |..+..+ ++. +++..+ . . +.+...+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3569999999999999999987654 6665555 431 233332 0 0 11234566
Q ss_pred HHHHHHh----cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcC
Q 002159 759 IFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLR 832 (958)
Q Consensus 759 lf~~A~~----~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlr 832 (958)
.+..++. ....+|++||+-....-+-- + ...++..+.. ...+.-||.|+|.+ +++|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~-----~~ev~~~l~~---Rp~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P-----LEEVISALNA---RPGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C-----HHHHHHHHHT---SCTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C-----HHHHHHHHHh---CcCCCEEEEECCCC---cHHHHH
Confidence 6666654 45789999999654321100 0 1233344442 23566788899876 345543
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.28 E-value=0.0023 Score=64.44 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|.|++||||||+++.+|..+|..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34599999999999999999999998765543
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.0035 Score=62.53 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~ 430 (958)
.+..|.|.|++||||||+++.+++.+ |.+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 34569999999999999999999998 887877764
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.27 E-value=0.0019 Score=65.06 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=30.0
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
.++..|+|.|+||+||||+++.++..++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 34567999999999999999999999998877553
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.27 E-value=0.0014 Score=73.89 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-cc--------ccc-chhchHHHHHHHHHHhhcCCCeEE
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI----HVVEYSCH-NL--------MAS-SERKTSAALAQAFNTAQSYSPTIL 460 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~----~~~~I~~~-~l--------~s~-~~g~~e~~l~~~f~~A~~~~P~IL 460 (958)
+.+..++|+||+|+||||+++++++.+.. .++.+..+ ++ +.. ..+.....+...+..+....|.++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 34455999999999999999999997643 22233221 00 100 000011233455666666789999
Q ss_pred eecchh
Q 002159 461 LLRDFD 466 (958)
Q Consensus 461 ~iDeid 466 (958)
++||+.
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999973
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.26 E-value=0.0029 Score=64.44 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=28.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+.-|+|.|++|+||||+++.|++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998777653
No 374
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.26 E-value=0.003 Score=67.51 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
..+++|+||||||||++++++|+.++. .+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 457999999999999999999998765 455544
No 375
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.25 E-value=0.021 Score=67.36 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=51.0
Q ss_pred cEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC--CCChhhcCcCCccceeeccCCC
Q 002159 769 CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVGVNS 846 (958)
Q Consensus 769 ~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~--~ldpaLlrpgRfd~~I~v~~pp 846 (958)
-+|+|||++.++... +......+.++..+ | ..-+|.+|.||.||. .|+..++. -|...|.+.+ .
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~--G---Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv-~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQK--A---RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQV-S 410 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHH--C---TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECC-S
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHH--H---hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEc-C
Confidence 589999999887421 11223444555443 2 245899999999998 78888876 7888888987 6
Q ss_pred CHHHHHHHH
Q 002159 847 DVSYRERVL 855 (958)
Q Consensus 847 d~~~r~~Il 855 (958)
+......||
T Consensus 411 s~~Dsr~IL 419 (574)
T 2iut_A 411 SKIDSRTIL 419 (574)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHhc
Confidence 666665565
No 376
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.25 E-value=0.009 Score=62.33 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccch-------hhhccccch-----hhhHHHHHHHHHh----cCC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPE-------LINMYIGES-----EKNVRDIFQKARS----ARP 768 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~-------l~~~~~Ges-----e~~vr~lf~~A~~----~~P 768 (958)
+.-++++||+|+||||++..++..+ +..++.++... +.+. .|-. -....++++.++. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4557889999999999888887665 45555553221 1111 1211 1123466777665 357
Q ss_pred cEEEEcccccc
Q 002159 769 CVIFFDELDSL 779 (958)
Q Consensus 769 ~ILfiDEiD~l 779 (958)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
No 377
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.25 E-value=0.0024 Score=64.86 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
.|.-+.|.|||||||||+++.+++.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455599999999999999999999863
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.24 E-value=0.0024 Score=62.98 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.8
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
..|+|.|++||||||+++.||..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999887653
No 379
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0026 Score=64.75 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=28.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45699999999999999999999999887765
No 380
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0032 Score=63.15 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
..|+|.|+|||||||+++.++..+|..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 459999999999999999999999876543
No 381
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.23 E-value=0.0031 Score=65.19 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
..|.|.||+||||||+++.+++.+|..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35999999999999999999999987554
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.22 E-value=0.0025 Score=65.96 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
++..|+|.|+||+||||+++.||..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999877665
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0044 Score=69.40 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=28.4
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
+-.+..+.+.-++|+||||+||||+++.+|+.+.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3344556778899999999999999999999873
No 384
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.21 E-value=0.0022 Score=62.88 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
-|+|.|+|||||||+++.+ ..+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888876543
No 385
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.20 E-value=0.0027 Score=74.51 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=51.3
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccch-hhh---ccc--------cchhhhHHHHHHHHHhcCCc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPE-LIN---MYI--------GESEKNVRDIFQKARSARPC 769 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~~-l~~---~~~--------Gese~~vr~lf~~A~~~~P~ 769 (958)
.+..+..+++.||+|+||||+++++++.... ..+.+.++. +.- .++ +..+..+.++...+....|.
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCC
Confidence 4566788999999999999999999998753 355555443 210 011 11223456666777778999
Q ss_pred EEEEcccc
Q 002159 770 VIFFDELD 777 (958)
Q Consensus 770 ILfiDEiD 777 (958)
++++.|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999973
No 386
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.20 E-value=0.0015 Score=85.21 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=36.6
Q ss_pred cCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
.++.-.+.+++|..+.|+||+|+|||||++.+.+...+.-+.|..
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~i 477 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccC
Confidence 344445566777789999999999999999999999988777654
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.19 E-value=0.0033 Score=62.03 Aligned_cols=29 Identities=41% Similarity=0.726 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.|+|.|++||||||+++.++..+|..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999976554
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.18 E-value=0.0049 Score=71.44 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 377 KILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 377 k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
+.|..++.+..++-.+.++.+.-++|+|+||+||||+++.+|+.+.
T Consensus 273 ~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 273 EEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp HHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4444455444444455567778899999999999999999999873
No 389
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.16 E-value=0.024 Score=67.56 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVAT 730 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~ 730 (958)
..-++++||+|+|||+||+.++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 45689999999999999999864
No 390
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.16 E-value=0.0021 Score=78.19 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCcccCCCCCceEEEEcCCCChHHHHHHHHH
Q 002159 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVA 418 (958)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA 418 (958)
++.-.+.++.+.-+.|+||||||||||++.+.
T Consensus 338 L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 44445556677779999999999999997654
No 391
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.15 E-value=0.0031 Score=65.19 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
+..|.|.||+||||||+++.+++.++.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3469999999999999999999999877664
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.14 E-value=0.0026 Score=66.25 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=28.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
++..|+|.|+||+||||+++.|+..++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999998877755
No 393
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0025 Score=63.98 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.|+||+||||+++.++..++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999998877654
No 394
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.0025 Score=62.47 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.9
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
-|+|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888887765
No 395
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.002 Score=70.89 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=31.4
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeeeccchh
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 744 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~~l 744 (958)
..|+|.||+|+|||++++.||..++..+++++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 468999999999999999999999988888865443
No 396
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.017 Score=64.76 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----------------hhchHHHHHHHHHHhhcC
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----------------ERKTSAALAQAFNTAQSY 455 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~~~l~s~~----------------~g~~e~~l~~~f~~A~~~ 455 (958)
..+.-++|+|+||+|||||+..+|... |..++.++...-.... ....+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 445569999999999999999888764 5667777764321110 011122222222233345
Q ss_pred CCeEEeecchhhhhh
Q 002159 456 SPTILLLRDFDVFRN 470 (958)
Q Consensus 456 ~P~IL~iDeid~L~~ 470 (958)
.+.+++||.+..+.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999998874
No 397
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.13 E-value=0.0033 Score=66.31 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..|+|.||||+||||+++.++..+|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 345999999999999999999999886443
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0032 Score=62.82 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=31.9
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchh
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 744 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l 744 (958)
++..|.|.|++|+||||+++.++..+ |.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45678999999999999999999987 888887765433
No 399
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.11 E-value=0.004 Score=66.14 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..|.|.||+||||||+++.+|..+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 445999999999999999999999987654
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.11 E-value=0.0029 Score=63.82 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.-|+|.|++||||||+++.++..+|..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3499999999999999999999998655443
No 401
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.11 E-value=0.009 Score=67.89 Aligned_cols=77 Identities=9% Similarity=0.001 Sum_probs=46.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccccc--------hh-----------------
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS--------ER----------------- 439 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l---------g~~~~~I~~~~l~s~~--------~g----------------- 439 (958)
+..+.-++|+||||+|||||++.+|... +-..+.++..+..... .+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3556669999999999999999776432 2336777765421100 00
Q ss_pred --chHHHHHHHHHHhhcCCCeEEeecchhhhhh
Q 002159 440 --KTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 440 --~~e~~l~~~f~~A~~~~P~IL~iDeid~L~~ 470 (958)
.....+..+........|.+++||++..+..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0011222233333345789999999987764
No 402
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.10 E-value=0.0025 Score=64.92 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.|+|.|++||||||+++.+++ +|..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 489999999999999999999 88766554
No 403
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.10 E-value=0.0034 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
.-|+|.|++||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999987
No 404
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.011 Score=61.78 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=24.5
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHH
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVAT 730 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~ 730 (958)
.|+.++.-++++|+||+|||+++..+|.
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4788899999999999999999987654
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.09 E-value=0.0029 Score=65.46 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=28.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45699999999999999999999999887765
No 406
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.08 E-value=0.0025 Score=70.82 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 375 ~~k~L~~ii~p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.++.+...+...+.++.. .+|+|+|+||+||||+++++|+.++..++.
T Consensus 7 L~~~il~~l~~~i~~g~~-----~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYR-----VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHTTTTCSC-----EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCe-----eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 344555555555554432 469999999999999999999999877644
No 407
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.07 E-value=0.0044 Score=67.78 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l 421 (958)
++.|..++|+||||+|||||++.+++.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3444459999999999999999999998
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0028 Score=63.10 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
..|+|.|+|||||||+++.++..++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45999999999999999999999998765
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.07 E-value=0.0031 Score=64.87 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.|+|.|+|||||||+++.++..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 389999999999999999999998776644
No 410
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.07 E-value=0.0034 Score=65.32 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.1
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.+++++-|+|.||||+||+|.|+.|+..++.+.++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 445567788999999999999999999998776643
No 411
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.06 E-value=0.0035 Score=66.05 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=27.6
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
++..++|.||||+||||++++|+..++...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35789999999999999999999988876543
No 412
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0033 Score=61.75 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.|+|.|++||||||+++.++..+|..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999977654
No 413
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.05 E-value=0.0029 Score=62.68 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVAR-RLG 422 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~-~lg 422 (958)
.-|+|.|+||+||||+++.++. .+|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 3589999999999999999998 344
No 414
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.05 E-value=0.003 Score=62.90 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCcee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFL 737 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i 737 (958)
+.-|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999998877
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0027 Score=67.51 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=32.3
Q ss_pred cCCCC---CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 703 SGLRK---RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 703 ~~i~~---~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
..+.+ +..|.|.|++|+||||++++||+.++..|+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 35555 78899999999999999999999999887764
No 416
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.04 E-value=0.0033 Score=64.72 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=27.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.||||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998877765
No 417
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.04 E-value=0.003 Score=65.01 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.|+|.|+|||||||+++.++..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 389999999999999999999998766654
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.04 E-value=0.0049 Score=61.62 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|.|++||||||+++.++..+|..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34699999999999999999999998655543
No 419
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.04 E-value=0.015 Score=71.71 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHH
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATE 731 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~ 731 (958)
.++.-++|+||||+||||++|++++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45678999999999999999999875
No 420
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.03 E-value=0.0089 Score=69.85 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=48.9
Q ss_pred Cc-EEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCC--CCChhhcCcCCccceeeccC
Q 002159 768 PC-VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVGV 844 (958)
Q Consensus 768 P~-ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~--~ldpaLlrpgRfd~~I~v~~ 844 (958)
|. +++|||+..+... .......++..|...-. .-++.+|.+|.+|+ .++..++. .|...|-+.+
T Consensus 297 P~ivlvIDE~~~ll~~------~~~~~~~~l~~Lar~gR-----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT------VGKKVEELIARLAQKAR-----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHH------HHHHHHHHHHHHHHHCG-----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhh------hhHHHHHHHHHHHHHhh-----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 8999999877631 01112334444433311 23788999999997 68777766 7888888887
Q ss_pred CCCHHHHHHHHH
Q 002159 845 NSDVSYRERVLK 856 (958)
Q Consensus 845 ppd~~~r~~Il~ 856 (958)
.+......|+.
T Consensus 364 -~s~~dsr~ilg 374 (512)
T 2ius_A 364 -SSKIDSRTILD 374 (512)
T ss_dssp -SSHHHHHHHHS
T ss_pred -CCHHHHHHhcC
Confidence 66666666664
No 421
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.03 E-value=0.0031 Score=62.17 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=27.6
Q ss_pred CcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 709 SGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
..|+|.|++|+||||+++.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887754
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.03 E-value=0.0019 Score=65.27 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.7
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
++..|+|.|+||+||||+++.++..++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999998776654
No 423
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.01 E-value=0.056 Score=63.73 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=36.3
Q ss_pred cCcEEEEEecCCCC--CCChhhhccccEEEEcCCCCHHHHHHHHH
Q 002159 521 RQQVLLVAAADSSE--GLPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (958)
Q Consensus 521 ~~~ViVIaaTn~~~--~Ld~alrrrf~~eIsig~Pde~qR~~Il~ 563 (958)
...|-+|.+|.++. .++..++..|...|.+...+..+-..|+.
T Consensus 376 a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 376 AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 45788999999987 89999999999999999988888777763
No 424
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.00 E-value=0.0034 Score=63.23 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGI 423 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~ 423 (958)
.-+.|.||||+||||+++.+++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 34899999999999999999998753
No 425
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.00 E-value=0.0068 Score=72.21 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=54.3
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchh----hhccccchhhhHHHHHHHH---------HhcCCcEE
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL----INMYIGESEKNVRDIFQKA---------RSARPCVI 771 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l----~~~~~Gese~~vr~lf~~A---------~~~~P~IL 771 (958)
...+++.||||||||+++++++..+ +..++.+..+.- +....|.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 4678999999999999999998754 444443322111 1111111122233332110 11235799
Q ss_pred EEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCC
Q 002159 772 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR 822 (958)
Q Consensus 772 fiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNr 822 (958)
++||+..+. ...+..|+..+. ....++++|=.+.
T Consensus 284 IIDEasml~-------------~~~~~~Ll~~~~----~~~~lilvGD~~Q 317 (574)
T 3e1s_A 284 IVDEVSMMG-------------DALMLSLLAAVP----PGARVLLVGDTDQ 317 (574)
T ss_dssp EECCGGGCC-------------HHHHHHHHTTSC----TTCEEEEEECTTS
T ss_pred EEcCccCCC-------------HHHHHHHHHhCc----CCCEEEEEecccc
Confidence 999986553 345566655443 2346777775444
No 426
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.00 E-value=0.0042 Score=63.16 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|.|++||||||+++.++..+|..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34699999999999999999999998755543
No 427
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.99 E-value=0.0034 Score=63.71 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+.++.-+.|.||||+|||||+++|++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34567799999999999999999999863
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.98 E-value=0.0052 Score=63.89 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+.++-|+|.||||+||+|.++.+|..+|...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 44456899999999999999999999986543
No 429
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.98 E-value=0.022 Score=65.80 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=30.5
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc----CCceeeec
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVK 740 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~----~~~~i~v~ 740 (958)
.|+.++.-+++.|+||+|||+|+..+|... +.+++.++
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 478889999999999999999999998754 44554443
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.98 E-value=0.0035 Score=64.38 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=27.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.||||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998887765
No 431
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.98 E-value=0.0034 Score=62.82 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 432
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.97 E-value=0.014 Score=65.20 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHN 432 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg---------~~~~~I~~~~ 432 (958)
++.+.-++|+||||+|||||++.+++... -..+.++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45556699999999999999999999872 2446777644
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.97 E-value=0.0055 Score=64.07 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
+..|+|.|++||||||+++.+|..++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3469999999999999999999999876554
No 434
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.97 E-value=0.0034 Score=65.27 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
+..|+|.|++||||||+++.+|..+|..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34599999999999999999999998765543
No 435
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.96 E-value=0.0035 Score=63.97 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
.|.|.|++||||||+++.+++ +|..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 489999999999999999998 7876653
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0041 Score=65.63 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.+..|+|.||||+||||+++.++..+|...+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345699999999999999999999998765543
No 437
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.95 E-value=0.019 Score=67.62 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=66.8
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchh----hh------------------cc----cc--
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL----IN------------------MY----IG-- 750 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l----~~------------------~~----~G-- 750 (958)
..++.++.-++|.||||+|||||++.+++.. +...+.+...+- .. .+ ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 4478889999999999999999999999765 333333322110 00 00 00
Q ss_pred chhhhHHHHHHHHHhcCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCC
Q 002159 751 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 823 (958)
Q Consensus 751 ese~~vr~lf~~A~~~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp 823 (958)
...+..+.++..+....|.+|++|=+..+.... . +....+.+..++..+.. .++.||.++...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~--~---~~~~~~~i~~ll~~l~~-----~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGV--S---NNAFRQFVIGVTGYAKQ-----EEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS--C---HHHHHHHHHHHHHHHHH-----TTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhC--C---hHHHHHHHHHHHHHHHh-----CCCEEEEEECcc
Confidence 123456667778888899999999665554321 0 11134455566666542 234445555444
No 438
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.1 Score=53.04 Aligned_cols=139 Identities=18% Similarity=0.339 Sum_probs=87.8
Q ss_pred EEeecHhhhhhccccc---cceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccccc
Q 002159 95 LLGLSTCVLKQLSVTS---GSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMELL 171 (958)
Q Consensus 95 ~v~l~~~~l~~l~~~~---g~~v~v~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (958)
=|.|+.|+|.+|.=.+ -=.-.|+|. ...|.+.|=||+= .-
T Consensus 47 KIiLP~SaL~~L~~~~i~~Pm~F~l~n~--~~~~~th~GVlEF-----------------------------------~A 89 (208)
T 1zc1_A 47 KIFLPPSALSKLSMLNIRYPMLFKLTAN--ETGRVTHGGVLEF-----------------------------------IA 89 (208)
T ss_dssp EEEECHHHHHHHHHTTCCSSCCEEEECT--TTCCEEEEEEEEE-----------------------------------CC
T ss_pred eEECCHHHHHHHHHCCCCcCEEEEEEeC--CCCCEEEEEEEEE-----------------------------------Ec
Confidence 6889999999886321 112234442 2345566655421 23
Q ss_pred cCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceeEEEEEecCCCCCcceeeEEEeeecC
Q 002159 172 DRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKIP 251 (958)
Q Consensus 172 ~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~rv~~~~~p 251 (958)
+++.+||++-++.||++..|++ |+|+.. .+| -|+.+++ -|
T Consensus 90 ~EG~v~lP~wmm~~L~l~~gd~--------------------------------V~i~~~---~LP-kgt~vkl----qP 129 (208)
T 1zc1_A 90 EEGRVYLPQWMMETLGIQPGSL--------------------------------LQISST---DVP-LGQFVKL----EP 129 (208)
T ss_dssp SSCEEEECHHHHHHHTCCTTCE--------------------------------EEEEEE---ECC-CCSEEEE----EC
T ss_pred CCCeEEcCHHHHHhcCCCCCCE--------------------------------EEEEEe---EcC-CCCEEEE----eE
Confidence 6788999999999999998741 222222 342 5665555 33
Q ss_pred CCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEec
Q 002159 252 ECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEP 331 (958)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~r~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~ 331 (958)
....+ .+-.+.+.+++..|++ |. .|.+||+|.|.. +....+|+|.+++|
T Consensus 130 ~~~~F--------ldi~npKavLE~~LRn-fs---tLT~Gd~I~i~~-------------------~~~~y~l~V~e~kP 178 (208)
T 1zc1_A 130 QSVDF--------LDISDPKAVLENVLRN-FS---TLTVDDVIEISY-------------------NGKTFKIKILEVKP 178 (208)
T ss_dssp CHHHH--------HTSSCHHHHHHHHHHH-CS---CEESSSEEEEEE-------------------TTEEEEEEEEEEEC
T ss_pred Ccccc--------ccccCHHHHHHHHhhc-Cc---cccCCCEEEEEe-------------------CCEEEEEEEEEEcC
Confidence 32211 1123456788999986 43 799999999985 35788999999999
Q ss_pred CC--CeEEEEcC
Q 002159 332 SE--ETVLRVNC 341 (958)
Q Consensus 332 ~~--~~~~~vd~ 341 (958)
+. ..+.++|+
T Consensus 179 ~~~~~aV~IidT 190 (208)
T 1zc1_A 179 ESSSKSICVIET 190 (208)
T ss_dssp SSTTCEECCSSS
T ss_pred CCCCceEEEEeC
Confidence 74 24555553
No 439
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.94 E-value=0.0033 Score=65.05 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.||||+||||+++.||..++..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999776654
No 440
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0038 Score=63.76 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
.+..+.|+||+|+|||||++.+++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345699999999999999999999874
No 441
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.93 E-value=0.0037 Score=64.12 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
.+.+++-+.|.||||+|||||+++|++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456678899999999999999999999874
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.92 E-value=0.0043 Score=64.88 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=28.6
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877765
No 443
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.92 E-value=0.0039 Score=65.83 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=30.2
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
..++..|+|.||||+||||+++.|+..++..++++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 34567899999999999999999999998777765
No 444
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0046 Score=61.96 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
+.-++|.||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999999864
No 445
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.89 E-value=0.018 Score=63.00 Aligned_cols=74 Identities=7% Similarity=0.060 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccccc----------------hhchHHH-HHHHHHH-
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASS----------------ERKTSAA-LAQAFNT- 451 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~l-----g~~~~~I~~~~l~s~~----------------~g~~e~~-l~~~f~~- 451 (958)
..+ -++++||||+|||||+-.++... |-..+.|+..+-.... +...+.. +. +.+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~l 104 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVNQL 104 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHHHH
Confidence 445 48999999999999977765543 5667788875422100 0111222 21 1222
Q ss_pred --hhcCCCeEEeecchhhhhh
Q 002159 452 --AQSYSPTILLLRDFDVFRN 470 (958)
Q Consensus 452 --A~~~~P~IL~iDeid~L~~ 470 (958)
.+...|.++++|-+.++.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 3456799999999999875
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.88 E-value=0.0042 Score=60.94 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=27.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.|++|+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887754
No 447
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.88 E-value=0.0043 Score=64.56 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~lg~ 423 (958)
.+.|.-+.|.||||+|||||++++++...+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456677999999999999999999998764
No 448
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.011 Score=64.62 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=44.8
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhh-------hcc------------c-cchhhhHHHHHHH
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI-------NMY------------I-GESEKNVRDIFQK 762 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~-------~~~------------~-Gese~~vr~lf~~ 762 (958)
.++.-++++||||+||||+++.+|..+ +..+..+...... ..| . ++......+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 446679999999999999999999876 3344433321110 011 0 1111122334566
Q ss_pred HHhcCCcEEEEcccc
Q 002159 763 ARSARPCVIFFDELD 777 (958)
Q Consensus 763 A~~~~P~ILfiDEiD 777 (958)
+....|.++++|+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 667789999999864
No 449
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.86 E-value=0.0025 Score=66.48 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=19.2
Q ss_pred CcccCCCCCceEEEEcCCCChHHHHHHHHH-HHhC
Q 002159 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVA-RRLG 422 (958)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTTLaraIA-~~lg 422 (958)
+..+.++.+.-+.|.||+||||||+++.++ +.+.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 334444555669999999999999999999 8764
No 450
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.85 E-value=0.0043 Score=64.39 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.7
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHc
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~ 732 (958)
+.+.++.-+.|.||+|+|||||+++|++..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456778889999999999999999999977
No 451
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.85 E-value=0.041 Score=71.09 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHc---C----Cc--eeeeccc---hhh-------hcc---------ccchhhhHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATEC---S----LN--FLSVKGP---ELI-------NMY---------IGESEKNVRDI 759 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~---~----~~--~i~v~~~---~l~-------~~~---------~Gese~~vr~l 759 (958)
..-+.|+|+.|+|||+||+.++... . .. ++.+... .+. ... .......+...
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 3458899999999999999987652 1 11 2333221 010 000 00111222333
Q ss_pred HHHHHhc--CCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCCCCChhhcCcCCcc
Q 002159 760 FQKARSA--RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFD 837 (958)
Q Consensus 760 f~~A~~~--~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~aTNrp~~ldpaLlrpgRfd 837 (958)
+...... ++.+|+||+++... + ++.+. .+.-||.||..+...... . .-.
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~------------------~----~~~~~---~~~~ilvTtR~~~~~~~~-~---~~~ 277 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPW------------------V----LKAFD---NQCQILLTTRDKSVTDSV-M---GPK 277 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHH------------------H----HTTTC---SSCEEEEEESSTTTTTTC-C---SCB
T ss_pred HHHHHhccCCCEEEEEecCCCHH------------------H----HHhhc---CCCEEEEEcCCHHHHHhh-c---CCc
Confidence 3333333 37899999986321 1 22221 234577788766543211 1 223
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhccCCCCcCHHHHHhhCCCCC
Q 002159 838 KLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 881 (958)
Q Consensus 838 ~~I~v~~ppd~~~r~~Il~~~~~~~~~~~d~~l~~la~~~t~g~ 881 (958)
..+.++.+.+.++-.++|........-.......+|+++| .|.
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~-~gl 320 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC-KGS 320 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT-TTC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh-CCC
Confidence 4566653356666677777665433322223367788887 444
No 452
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.84 E-value=0.0047 Score=63.90 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 397 ~~~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
+..|+|.|+|||||||+++.+|..++..++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 345999999999999999999999986443
No 453
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.83 E-value=0.088 Score=61.48 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=34.7
Q ss_pred CcEEEEEecCCCC--CCChhhhccccEEEEcCCCCHHHHHHHHH
Q 002159 522 QQVLLVAAADSSE--GLPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (958)
Q Consensus 522 ~~ViVIaaTn~~~--~Ld~alrrrf~~eIsig~Pde~qR~~Il~ 563 (958)
..+-+|.+|.++. .++..++..+...+.+...++.+...|+.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 3677888888886 68888888888999999888888887764
No 454
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.82 E-value=0.0061 Score=62.96 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
..|+|.|+|||||||+++.+|..+|..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4599999999999999999999998766543
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.82 E-value=0.0058 Score=63.02 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 400 VLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
|+|.||||+||+|.++.+|..+|...+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 789999999999999999999987544
No 456
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.0055 Score=61.97 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~ 426 (958)
.|.|.|++||||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3899999999999999999999997554
No 457
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.82 E-value=0.0048 Score=61.75 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=27.9
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
+..|+|.|+|||||||+++.++..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34689999999999999999999998777654
No 458
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.82 E-value=0.0041 Score=63.33 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
.|.|.|+|||||||+++.+++ ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766543
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.81 E-value=0.0049 Score=63.57 Aligned_cols=30 Identities=37% Similarity=0.568 Sum_probs=26.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.||||+||+|.|+.||..++.+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 478999999999999999999998877654
No 460
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.81 E-value=0.019 Score=60.26 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeeccc-hhhhccccchhh----------------------hHHHHHHHHH
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP-ELINMYIGESEK----------------------NVRDIFQKAR 764 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~~~-~l~~~~~Gese~----------------------~vr~lf~~A~ 764 (958)
...++++||+|+|||.++.+++...+..++.+-.. ++...|..+..+ ....++....
T Consensus 108 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~ 187 (237)
T 2fz4_A 108 DKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE 187 (237)
T ss_dssp TSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHH
Confidence 34599999999999999999988887665555433 444333221110 0122222222
Q ss_pred h--cCCcEEEEccccccc
Q 002159 765 S--ARPCVIFFDELDSLA 780 (958)
Q Consensus 765 ~--~~P~ILfiDEiD~l~ 780 (958)
. ....+|+|||++.+.
T Consensus 188 ~~~~~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 188 KLGNRFMLLIFDEVHHLP 205 (237)
T ss_dssp HHTTTCSEEEEECSSCCC
T ss_pred HhcccCCEEEEECCccCC
Confidence 2 346899999999985
No 461
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.80 E-value=0.0048 Score=62.72 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=28.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCceeeec
Q 002159 708 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 740 (958)
Q Consensus 708 ~~~iLL~GppGtGKTtLakaiA~~~~~~~i~v~ 740 (958)
+..|+|.|++|+||||+++.++..++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 346899999999999999999999988776653
No 462
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.80 E-value=0.0036 Score=61.98 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.0
Q ss_pred CcEEEecCCCChhHHHHHHHHH-HcCCceee
Q 002159 709 SGVLLYGPPGTGKTLLAKAVAT-ECSLNFLS 738 (958)
Q Consensus 709 ~~iLL~GppGtGKTtLakaiA~-~~~~~~i~ 738 (958)
.-|+|.|+||+||||+++.++. ..+..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 3589999999999999999998 45544443
No 463
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.80 E-value=0.0071 Score=60.60 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 002159 400 VLLHGLPGCGKRTVVRYVARRL---GIHVVEYS 429 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~l---g~~~~~I~ 429 (958)
|+|.|++||||||+++.++..+ |..++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999999998 88777664
No 464
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.80 E-value=0.0042 Score=63.38 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
++++.+.|.||||+|||||++.|++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999998764
No 465
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.80 E-value=0.012 Score=59.11 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 002159 400 VLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~l---g~~~~~I~~ 430 (958)
|.|.|++||||||+++.++..+ |..++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 8999999999999999999998 888775543
No 466
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.79 E-value=0.004 Score=63.93 Aligned_cols=28 Identities=39% Similarity=0.561 Sum_probs=25.0
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
.++.-+.|.||||+|||||+++|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999999875
No 467
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.79 E-value=0.0043 Score=62.38 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLG 422 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg 422 (958)
.-++|.||||+||||+++.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3489999999999999999998654
No 468
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.78 E-value=0.0051 Score=62.44 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 002159 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (958)
Q Consensus 395 ~~~~~VLL~GppGtGKTTLaraIA~~lg~ 423 (958)
..+.-++|.||+||||||+++.+++.+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34556999999999999999999998733
No 469
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.77 E-value=0.012 Score=60.41 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHcC----Cceeeeccchh
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGPEL 744 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~~----~~~i~v~~~~l 744 (958)
..++.-|+|.|++|+||||+++.++..++ .+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45567799999999999999999998764 45677765444
No 470
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.76 E-value=0.0054 Score=62.19 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHc-CCceeeec
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVK 740 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~-~~~~i~v~ 740 (958)
++..|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45679999999999999999999998 56777654
No 471
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.016 Score=63.79 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc---------cc---------------hhc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMA---------SS---------------ERK 440 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l---------g~~~~~I~~~~l~s---------~~---------------~g~ 440 (958)
+..+.-++|+||||+|||+++..+|... +...+.++...... .. ...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3456669999999999999999999875 44677777654210 00 000
Q ss_pred hH---HHHHHHHHHhhc-CCCeEEeecchhhhhh
Q 002159 441 TS---AALAQAFNTAQS-YSPTILLLRDFDVFRN 470 (958)
Q Consensus 441 ~e---~~l~~~f~~A~~-~~P~IL~iDeid~L~~ 470 (958)
.+ ..+..+...... ..+.+++||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122233333334 5789999999998865
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.74 E-value=0.01 Score=68.26 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=32.4
Q ss_pred hcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 002159 385 PTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (958)
Q Consensus 385 p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~~ 430 (958)
..+.++.+ ++|.||+|||||||++.+++...+..+.+..
T Consensus 152 l~i~~Gq~-------~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 152 LTVGRGQR-------MGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp SCCBTTCE-------EEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EEecCCCE-------EEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 45566666 9999999999999999999999887766643
No 473
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.74 E-value=0.0062 Score=64.63 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=28.6
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
.++..|.|.||+||||||+++.||..+|..++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 345679999999999999999999999887653
No 474
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.71 E-value=0.0054 Score=67.08 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=31.1
Q ss_pred hhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCCce
Q 002159 701 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF 736 (958)
Q Consensus 701 ~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~~ 736 (958)
++..++++..+.|+||||+|||||+++|++.+...+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 446889999999999999999999999999874443
No 475
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.70 E-value=0.022 Score=63.29 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 002159 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHN 432 (958)
Q Consensus 394 ~~~~~~VLL~GppGtGKTTLaraIA~~l---------g~~~~~I~~~~ 432 (958)
+..+.-++|+||||+|||+++..+|... +...+.++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3555669999999999999999999872 44677777654
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.70 E-value=0.024 Score=67.81 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+++++.+.++||+|+|||||++++++...
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34678899999999999999999999998763
No 477
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.0057 Score=62.17 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRL 421 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~l 421 (958)
..++|+||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 348999999999999999999986
No 478
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.69 E-value=0.0071 Score=62.23 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 002159 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~lg~~~~~I 428 (958)
.|+|.|+|||||||+++.++..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999998766543
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.69 E-value=0.0085 Score=66.84 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=31.1
Q ss_pred hcCCCcccCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 002159 385 PTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (958)
Q Consensus 385 p~l~p~~~~~~~~~~VLL~GppGtGKTTLaraIA~~lg~~~~~I~ 429 (958)
..+.++.+ ++|.||||+|||||++.+++...+..+.+.
T Consensus 66 l~i~~Gq~-------~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 66 LTCGIGQR-------IGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp SCEETTCE-------EEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred eeecCCCE-------EEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 44555555 999999999999999999999987766553
No 480
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.0057 Score=61.29 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 707 KRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 707 ~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+++-++|.||+|+|||||+++|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999999764
No 481
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.69 E-value=0.0032 Score=66.33 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 734 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~ 734 (958)
+..+.++.-+.|.||||+|||||+++|++....
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 346678899999999999999999999987643
No 482
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.67 E-value=0.02 Score=57.22 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred CCCCCcEEEecCCCChhHHHHHHHHHHc---CCceeeeccchhhhccccc-------hhhhHHHHHHHHH--hcCCcEEE
Q 002159 705 LRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-------SEKNVRDIFQKAR--SARPCVIF 772 (958)
Q Consensus 705 i~~~~~iLL~GppGtGKTtLakaiA~~~---~~~~i~v~~~~l~~~~~Ge-------se~~vr~lf~~A~--~~~P~ILf 772 (958)
..++.-|+|.|++|+||||+++.++..+ +..+..+++..+.....++ ....++.+...++ .....+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi 89 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVI 89 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEE
Q ss_pred Ec
Q 002159 773 FD 774 (958)
Q Consensus 773 iD 774 (958)
.|
T Consensus 90 ~d 91 (186)
T 2yvu_A 90 CS 91 (186)
T ss_dssp EE
T ss_pred Ee
No 483
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.67 E-value=0.0057 Score=62.38 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.5
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLS 738 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~ 738 (958)
.|.|.||+||||||+++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7777664
No 484
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.67 E-value=0.0083 Score=71.61 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+++++.+.++||+|+|||||++++++...
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34678899999999999999999999998763
No 485
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.65 E-value=0.0058 Score=62.76 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 002159 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (958)
Q Consensus 396 ~~~~VLL~GppGtGKTTLaraIA~~lg~ 423 (958)
.+.-++|.||+|+||||+++.+++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3455999999999999999999998764
No 486
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.65 E-value=0.015 Score=69.69 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=28.4
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+++++.+.++||+|+|||||++++++...
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34678899999999999999999999998763
No 487
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.65 E-value=0.0059 Score=62.84 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=27.2
Q ss_pred cEEEecCCCChhHHHHHHHHHHcCCceeee
Q 002159 710 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 739 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~~~~~i~v 739 (958)
.|+|.|+||+||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877765
No 488
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.64 E-value=0.0068 Score=67.98 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=51.9
Q ss_pred hhcCCCCCCcEEEecCCCChhHHHHHHHHHHcCC--ceeeeccc-hhh-----hc--ccc-c-------hhhhHHHHHHH
Q 002159 701 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGP-ELI-----NM--YIG-E-------SEKNVRDIFQK 762 (958)
Q Consensus 701 ~~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~~--~~i~v~~~-~l~-----~~--~~G-e-------se~~vr~lf~~ 762 (958)
++..+.++..++|.||+|+|||||+++|++.... ..+.+.+. ++. .. ++- + ....+++.+..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~ 247 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRS 247 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHH
Confidence 4456778899999999999999999999998753 23444332 111 00 111 1 22346677777
Q ss_pred HHhcCCcEEEEcccc
Q 002159 763 ARSARPCVIFFDELD 777 (958)
Q Consensus 763 A~~~~P~ILfiDEiD 777 (958)
+....|.+++++|+.
T Consensus 248 ~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 248 CLRMKPTRILLAELR 262 (361)
T ss_dssp HTTSCCSEEEESCCC
T ss_pred HHhcCCCEEEEcCch
Confidence 877889999999963
No 489
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.64 E-value=0.0052 Score=62.89 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
.++.-+.|.||+|+|||||++.|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999887
No 490
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.62 E-value=0.0029 Score=66.05 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.3
Q ss_pred cCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 703 SGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 703 ~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
..+.+++-+.|.||||+|||||+++|++...
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567788899999999999999999998764
No 491
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.62 E-value=0.016 Score=69.28 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+++++.+.+.||+|+|||||++++++...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 34678899999999999999999999998763
No 492
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.61 E-value=0.0086 Score=62.91 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 398 ~~VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
..|.|.||+||||||+++.+|..+|..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999876543
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.60 E-value=0.02 Score=74.73 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=28.7
Q ss_pred hcCCCCCCcEEEecCCCChhHHHHHHHHHHcC
Q 002159 702 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 733 (958)
Q Consensus 702 ~~~i~~~~~iLL~GppGtGKTtLakaiA~~~~ 733 (958)
+..+++++.+.++||+|+|||||+++|.+...
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34778999999999999999999999998774
No 494
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.59 E-value=0.015 Score=67.19 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.3
Q ss_pred cEEEecCCCChhHHHHHHHHHHc
Q 002159 710 GVLLYGPPGTGKTLLAKAVATEC 732 (958)
Q Consensus 710 ~iLL~GppGtGKTtLakaiA~~~ 732 (958)
.+++.|++|||||+++++++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998766
No 495
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.59 E-value=0.016 Score=66.14 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=43.1
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHcCC---ceeeeccc-hhhhc-----cccc-hhhhHHHHHHHHHhcCCcEEEEcc
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATECSL---NFLSVKGP-ELINM-----YIGE-SEKNVRDIFQKARSARPCVIFFDE 775 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~~~---~~i~v~~~-~l~~~-----~~Ge-se~~vr~lf~~A~~~~P~ILfiDE 775 (958)
.++.-+++.||+|+||||+++++++.+.. +++.+..+ ++.-. .++. ..-.....+..+-...|.++++.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 44556899999999999999999998753 23332211 11100 0111 111234444555567899999998
Q ss_pred c
Q 002159 776 L 776 (958)
Q Consensus 776 i 776 (958)
+
T Consensus 245 i 245 (418)
T 1p9r_A 245 I 245 (418)
T ss_dssp C
T ss_pred c
Confidence 5
No 496
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.58 E-value=0.0046 Score=63.84 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002159 399 AVLLHGLPGCGKRTVVRYVARR 420 (958)
Q Consensus 399 ~VLL~GppGtGKTTLaraIA~~ 420 (958)
.+.|.||||+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999987
No 497
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.57 E-value=0.0059 Score=64.38 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=26.4
Q ss_pred CCCCCCcEEEecCCCChhHHHHHHHHHHcCCc
Q 002159 704 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLN 735 (958)
Q Consensus 704 ~i~~~~~iLL~GppGtGKTtLakaiA~~~~~~ 735 (958)
.+.++.-+.|.||+|+|||||++.|++.+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45667779999999999999999999988643
No 498
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.57 E-value=0.039 Score=60.04 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCcEEEecCCCChhHHHHHHHHHHc----CCceeeeccchh----------------hhccccchhhhHHHHHHHHHh
Q 002159 706 RKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPEL----------------INMYIGESEKNVRDIFQKARS 765 (958)
Q Consensus 706 ~~~~~iLL~GppGtGKTtLakaiA~~~----~~~~i~v~~~~l----------------~~~~~Gese~~vr~lf~~A~~ 765 (958)
.++..++|+||+|+||||++..+|..+ |..+..+..... +..+.......++..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Q ss_pred cCCcEEEEcccccccCCCCCCCCCcchHHHHHHHHHHhhcCCCCCCCcEEEEE-ec
Q 002159 766 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIG-AS 820 (958)
Q Consensus 766 ~~P~ILfiDEiD~l~~~r~~~~~~~~~~~rv~~~LL~~ldg~~~~~~~v~VI~-aT 820 (958)
..|.+++||........ ...+.++...+... ....++++. +|
T Consensus 181 ~~~dlvIiDT~G~~~~~-----------~~~~~el~~~l~~~--~~~~~~lVl~at 223 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKD-----------PQYIDELKETIPFE--SSIQSFLVLSAT 223 (296)
T ss_dssp GGSSEEEEECCCCCTTS-----------HHHHHHHHHHSCCC--TTEEEEEEEETT
T ss_pred cCCCEEEEeCCCCChhh-----------HHHHHHHHHHHhhc--CCCeEEEEEECC
No 499
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.56 E-value=0.0082 Score=62.35 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 002159 400 VLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (958)
Q Consensus 400 VLL~GppGtGKTTLaraIA~~lg~~~~~ 427 (958)
|+|.|+|||||||+++.++..+|..++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 8999999999999999999999865443
No 500
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.56 E-value=0.019 Score=71.70 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH
Q 002159 393 SLKFRVAVLLHGLPGCGKRTVVRYVARR 420 (958)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTTLaraIA~~ 420 (958)
....+.-++|+||||+||||++|.++..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3455678999999999999999998753
Done!