Query 002161
Match_columns 958
No_of_seqs 465 out of 2710
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02877 alpha-amylase/limit d 100.0 8E-198 2E-202 1771.3 73.5 842 67-941 72-942 (970)
2 TIGR02103 pullul_strch alpha-1 100.0 4E-188 1E-192 1691.9 68.2 831 90-942 1-871 (898)
3 TIGR02102 pullulan_Gpos pullul 100.0 1E-105 3E-110 988.4 56.9 598 139-923 269-957 (1111)
4 TIGR02104 pulA_typeI pullulana 100.0 7E-94 1.5E-98 856.4 55.2 555 200-923 2-588 (605)
5 PRK03705 glycogen debranching 100.0 3.7E-91 7.9E-96 833.0 48.9 532 206-932 8-630 (658)
6 COG1523 PulA Type II secretory 100.0 7.6E-92 1.7E-96 832.2 42.3 545 206-925 16-659 (697)
7 TIGR02100 glgX_debranch glycog 100.0 4.7E-89 1E-93 819.9 53.6 544 206-930 3-655 (688)
8 PRK14510 putative bifunctional 100.0 2.2E-78 4.7E-83 762.2 50.8 540 206-923 12-648 (1221)
9 TIGR02402 trehalose_TreZ malto 100.0 1.7E-72 3.7E-77 663.6 40.1 494 219-919 1-541 (542)
10 KOG0470 1,4-alpha-glucan branc 100.0 1.2E-71 2.6E-76 644.2 29.4 656 91-925 5-710 (757)
11 TIGR01515 branching_enzym alph 100.0 6.2E-64 1.4E-68 599.1 41.4 303 209-623 16-351 (613)
12 PRK05402 glycogen branching en 100.0 1.9E-63 4.2E-68 604.9 45.0 310 208-623 118-460 (726)
13 PRK12313 glycogen branching en 100.0 7E-63 1.5E-67 592.9 44.4 310 208-623 25-364 (633)
14 PRK14706 glycogen branching en 100.0 4.1E-60 8.9E-65 565.2 43.5 306 208-623 25-360 (639)
15 PRK12568 glycogen branching en 100.0 1.3E-59 2.7E-64 560.9 43.5 307 209-623 126-464 (730)
16 PRK14705 glycogen branching en 100.0 1.5E-58 3.3E-63 573.9 41.3 303 209-623 622-960 (1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 2.2E-55 4.7E-60 525.5 44.3 304 208-623 105-448 (758)
18 PRK10785 maltodextrin glucosid 100.0 3.1E-52 6.7E-57 497.3 39.5 467 214-923 16-568 (598)
19 COG0296 GlgB 1,4-alpha-glucan 100.0 1.6E-50 3.5E-55 473.6 32.1 310 209-624 25-360 (628)
20 PLN02960 alpha-amylase 100.0 8.4E-49 1.8E-53 468.5 40.8 270 247-623 316-613 (897)
21 TIGR02456 treS_nterm trehalose 100.0 1.3E-48 2.7E-53 462.0 34.4 401 332-923 3-499 (539)
22 TIGR02403 trehalose_treC alpha 100.0 2E-48 4.3E-53 460.2 32.1 408 332-924 2-511 (543)
23 PRK10933 trehalose-6-phosphate 100.0 5.6E-48 1.2E-52 456.4 33.0 414 331-924 7-517 (551)
24 PRK09505 malS alpha-amylase; R 100.0 1.6E-45 3.5E-50 441.0 30.7 386 330-913 185-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 3.6E-40 7.9E-45 385.1 28.4 181 359-625 20-268 (479)
26 PF00128 Alpha-amylase: Alpha 100.0 2E-39 4.4E-44 351.0 14.2 178 358-625 1-202 (316)
27 PLN00196 alpha-amylase; Provis 100.0 4.8E-36 1E-40 344.3 24.8 174 357-624 40-232 (428)
28 PLN02361 alpha-amylase 100.0 6.7E-35 1.5E-39 331.7 29.2 167 371-624 32-208 (401)
29 PLN03244 alpha-amylase; Provis 100.0 4.9E-32 1.1E-36 319.6 36.2 234 251-623 326-588 (872)
30 PF11852 DUF3372: Domain of un 100.0 3.6E-35 7.8E-40 294.7 7.5 140 797-941 1-140 (168)
31 COG0366 AmyA Glycosidases [Car 100.0 4E-32 8.6E-37 316.1 23.6 190 335-606 1-232 (505)
32 PLN02784 alpha-amylase 100.0 5.9E-31 1.3E-35 314.5 22.4 191 332-624 496-702 (894)
33 PRK13840 sucrose phosphorylase 100.0 3.4E-29 7.5E-34 290.0 23.6 170 358-624 17-237 (495)
34 TIGR03852 sucrose_gtfA sucrose 100.0 3.9E-29 8.4E-34 288.0 20.5 144 464-623 45-233 (470)
35 KOG0471 Alpha-amylase [Carbohy 100.0 7.6E-27 1.6E-31 276.1 25.9 445 331-923 14-514 (545)
36 TIGR02455 TreS_stutzeri trehal 99.9 1.1E-24 2.5E-29 253.9 29.3 118 463-589 111-300 (688)
37 TIGR02401 trehalose_TreY malto 99.9 3.2E-24 7E-29 259.2 25.7 179 358-627 13-290 (825)
38 smart00642 Aamy Alpha-amylase 99.8 7.7E-19 1.7E-23 178.7 8.4 97 339-517 1-97 (166)
39 cd02860 Pullulanase_N_term Pul 99.7 7.7E-18 1.7E-22 157.2 12.0 96 210-310 1-97 (100)
40 KOG2212 Alpha-amylase [Carbohy 99.6 2.2E-15 4.8E-20 163.3 16.6 151 466-626 79-257 (504)
41 cd02856 Glycogen_debranching_e 99.6 8.5E-16 1.8E-20 144.4 11.1 91 209-302 1-95 (103)
42 PF14872 GHL5: Hypothetical gl 99.6 2E-15 4.4E-20 174.1 14.6 338 208-605 26-422 (811)
43 cd02852 Isoamylase_N_term Isoa 99.6 2.8E-15 6E-20 144.3 11.1 94 211-304 1-101 (119)
44 cd02853 MTHase_N_term Maltooli 99.5 1E-13 2.2E-18 125.9 8.8 81 211-309 1-85 (85)
45 PRK14511 maltooligosyl trehalo 99.5 5.5E-14 1.2E-18 171.7 8.3 82 358-519 17-98 (879)
46 PF02922 CBM_48: Carbohydrate- 99.4 3.2E-13 7E-18 121.8 9.7 79 209-294 1-85 (85)
47 PRK14507 putative bifunctional 99.4 2.7E-13 5.9E-18 174.4 7.3 80 358-517 755-834 (1693)
48 cd02854 Glycogen_branching_enz 99.2 1E-10 2.3E-15 109.6 10.1 78 215-301 3-89 (99)
49 cd02855 Glycogen_branching_enz 99.2 2.5E-10 5.4E-15 106.8 11.2 85 209-302 9-100 (106)
50 TIGR01531 glyc_debranch glycog 99.0 1.8E-10 3.8E-15 145.1 6.9 89 357-522 128-217 (1464)
51 COG3280 TreY Maltooligosyl tre 99.0 4.7E-10 1E-14 132.5 5.8 76 370-518 21-96 (889)
52 cd02858 Esterase_N_term Estera 98.8 1.3E-08 2.8E-13 92.8 9.2 69 216-298 5-74 (85)
53 PRK05402 glycogen branching en 98.4 6E-07 1.3E-11 111.1 8.1 76 209-297 20-98 (726)
54 cd02688 E_set E or "early" set 98.2 5.8E-06 1.3E-10 73.0 7.9 56 217-276 4-61 (83)
55 PF14701 hDGE_amylase: glucano 98.1 8E-06 1.7E-10 94.2 8.3 84 371-522 25-109 (423)
56 cd02861 E_set_proteins_like E 98.0 1.5E-05 3.3E-10 72.0 7.9 68 218-301 3-73 (82)
57 PF14871 GHL6: Hypothetical gl 97.8 0.00018 4E-09 71.2 11.2 97 465-584 27-132 (132)
58 PF11941 DUF3459: Domain of un 97.8 4.1E-05 8.9E-10 69.7 5.7 59 842-920 1-59 (89)
59 PF02638 DUF187: Glycosyl hydr 97.7 0.00017 3.7E-09 81.1 11.5 87 492-583 72-161 (311)
60 PRK14511 maltooligosyl trehalo 97.7 8.9E-05 1.9E-09 92.3 8.7 120 760-923 711-840 (879)
61 COG1649 Uncharacterized protei 96.7 0.0092 2E-07 69.3 11.2 89 492-585 117-208 (418)
62 PF02324 Glyco_hydro_70: Glyco 96.6 0.0064 1.4E-07 73.1 8.7 34 476-516 640-673 (809)
63 cd06597 GH31_transferase_CtsY 96.2 0.021 4.6E-07 65.1 9.7 93 492-586 87-187 (340)
64 KOG3625 Alpha amylase [Carbohy 95.8 0.0097 2.1E-07 73.0 4.9 43 471-521 185-228 (1521)
65 cd06594 GH31_glucosidase_YihQ 95.6 0.02 4.4E-07 64.7 6.4 90 492-587 73-167 (317)
66 PF13199 Glyco_hydro_66: Glyco 95.4 0.084 1.8E-06 63.9 11.2 95 488-588 168-270 (559)
67 cd06592 GH31_glucosidase_KIAA1 95.3 0.039 8.4E-07 62.0 7.1 89 491-586 71-165 (303)
68 cd06593 GH31_xylosidase_YicI Y 95.0 0.051 1.1E-06 60.9 7.2 91 492-590 68-163 (308)
69 PF00150 Cellulase: Cellulase 94.8 0.4 8.8E-06 51.8 13.3 27 487-513 59-85 (281)
70 cd06599 GH31_glycosidase_Aec37 94.6 0.068 1.5E-06 60.4 6.9 87 492-585 75-167 (317)
71 PF13200 DUF4015: Putative gly 94.6 0.12 2.6E-06 58.5 8.6 88 489-587 60-148 (316)
72 cd06591 GH31_xylosidase_XylS X 94.3 0.095 2.1E-06 59.3 7.1 88 492-586 68-159 (319)
73 cd06600 GH31_MGAM-like This fa 94.0 0.11 2.4E-06 58.7 6.8 90 492-586 66-160 (317)
74 PLN02960 alpha-amylase 93.7 0.061 1.3E-06 67.5 4.5 68 208-275 118-198 (897)
75 cd06602 GH31_MGAM_SI_GAA This 93.6 0.21 4.6E-06 57.1 8.2 92 493-586 69-165 (339)
76 PF02065 Melibiase: Melibiase; 93.4 0.28 6E-06 57.3 8.9 89 491-588 105-195 (394)
77 cd02859 AMPKbeta_GBD_like AMP- 93.0 0.27 5.9E-06 44.4 6.4 60 218-295 3-65 (79)
78 cd06598 GH31_transferase_CtsZ 92.6 0.22 4.7E-06 56.4 6.4 88 492-586 72-164 (317)
79 PRK10426 alpha-glucosidase; Pr 91.4 1 2.3E-05 55.7 10.9 91 492-589 271-366 (635)
80 cd02857 CD_pullulan_degrading_ 91.4 0.87 1.9E-05 43.1 8.0 62 209-275 12-80 (116)
81 PF01055 Glyco_hydro_31: Glyco 90.9 0.22 4.8E-06 58.5 4.2 93 491-587 84-181 (441)
82 cd06542 GH18_EndoS-like Endo-b 89.9 1.8 3.9E-05 47.1 9.9 64 490-586 51-114 (255)
83 cd02875 GH18_chitobiase Chitob 89.6 1.1 2.4E-05 51.7 8.4 57 493-587 67-123 (358)
84 cd06595 GH31_xylosidase_XylS-l 89.4 0.52 1.1E-05 52.8 5.4 83 491-584 75-157 (292)
85 PRK14582 pgaB outer membrane N 89.3 2.4 5.2E-05 52.8 11.4 34 553-586 435-468 (671)
86 cd02871 GH18_chitinase_D-like 88.9 2.5 5.4E-05 47.8 10.4 79 490-604 60-142 (312)
87 PRK10658 putative alpha-glucos 88.7 0.78 1.7E-05 57.1 6.7 88 491-586 326-418 (665)
88 cd06603 GH31_GANC_GANAB_alpha 88.3 0.96 2.1E-05 51.6 6.7 89 492-585 66-161 (339)
89 COG1523 PulA Type II secretory 88.1 1.1 2.4E-05 55.8 7.4 88 202-302 59-156 (697)
90 cd06604 GH31_glucosidase_II_Ma 87.9 1.1 2.5E-05 51.0 6.9 89 492-586 66-159 (339)
91 cd06545 GH18_3CO4_chitinase Th 87.5 2.8 6E-05 45.8 9.4 64 491-587 47-110 (253)
92 cd06547 GH85_ENGase Endo-beta- 84.5 2.3 4.9E-05 48.9 7.1 103 463-604 28-132 (339)
93 COG1501 Alpha-glucosidases, fa 84.3 1.9 4E-05 54.6 6.8 90 492-588 323-417 (772)
94 PF10438 Cyc-maltodext_C: Cycl 83.9 1.8 3.8E-05 39.4 4.7 33 878-923 8-40 (78)
95 PRK11052 malQ 4-alpha-glucanot 82.1 9.1 0.0002 48.1 11.4 30 357-393 161-190 (695)
96 PF02446 Glyco_hydro_77: 4-alp 80.9 2.8 6.1E-05 50.5 6.3 23 491-513 193-215 (496)
97 cd06589 GH31 The enzymes of gl 80.5 2.2 4.7E-05 47.0 4.8 50 491-586 67-116 (265)
98 PRK14508 4-alpha-glucanotransf 80.0 13 0.00029 44.9 11.5 23 491-513 199-221 (497)
99 PLN02635 disproportionating en 79.2 11 0.00024 46.0 10.5 22 491-512 225-246 (538)
100 PRK12568 glycogen branching en 78.8 5.9 0.00013 49.8 8.3 107 764-923 565-674 (730)
101 PF02324 Glyco_hydro_70: Glyco 76.6 4 8.6E-05 50.2 5.6 97 550-659 143-253 (809)
102 PLN02763 hydrolase, hydrolyzin 76.2 5.6 0.00012 51.5 7.2 87 492-584 243-334 (978)
103 PF02903 Alpha-amylase_N: Alph 72.8 9.7 0.00021 36.8 6.4 63 214-276 18-89 (120)
104 PF01120 Alpha_L_fucos: Alpha- 72.7 18 0.00038 41.7 9.6 97 491-606 139-238 (346)
105 cd06546 GH18_CTS3_chitinase GH 72.7 27 0.00059 38.5 10.6 46 557-602 93-138 (256)
106 PLN03244 alpha-amylase; Provis 71.8 4.3 9.3E-05 51.1 4.5 96 764-915 702-798 (872)
107 PRK05692 hydroxymethylglutaryl 71.0 53 0.0012 36.9 12.6 77 489-603 119-196 (287)
108 cd02874 GH18_CFLE_spore_hydrol 69.2 15 0.00033 41.2 7.9 84 492-604 47-130 (313)
109 cd06601 GH31_lyase_GLase GLase 68.3 12 0.00025 43.0 6.8 68 491-585 65-132 (332)
110 smart00812 Alpha_L_fucos Alpha 66.4 38 0.00082 39.7 10.6 92 491-606 129-225 (384)
111 TIGR00217 malQ 4-alpha-glucano 66.3 48 0.001 40.4 11.7 22 492-513 214-235 (513)
112 TIGR01531 glyc_debranch glycog 66.0 12 0.00025 50.1 6.8 62 555-626 486-547 (1464)
113 cd06562 GH20_HexA_HexB-like Be 64.4 42 0.00091 38.7 10.4 80 489-576 69-149 (348)
114 PRK14705 glycogen branching en 64.3 19 0.0004 48.1 8.2 71 837-922 1094-1167(1224)
115 PF02806 Alpha-amylase_C: Alph 61.9 12 0.00027 34.2 4.5 32 878-921 8-41 (95)
116 COG1640 MalQ 4-alpha-glucanotr 60.8 2.2E+02 0.0049 34.8 15.7 19 739-757 392-410 (520)
117 PRK14507 putative bifunctional 58.0 17 0.00037 49.7 6.4 66 554-620 1045-1112(1693)
118 KOG1065 Maltase glucoamylase a 57.9 24 0.00052 44.7 7.2 88 492-585 353-447 (805)
119 cd06568 GH20_SpHex_like A subg 56.2 52 0.0011 37.7 9.2 74 489-575 74-153 (329)
120 PRK14510 putative bifunctional 54.7 44 0.00096 44.9 9.4 87 491-585 933-1029(1221)
121 PF02449 Glyco_hydro_42: Beta- 53.5 47 0.001 38.4 8.4 105 491-604 48-160 (374)
122 cd06564 GH20_DspB_LnbB-like Gl 53.0 62 0.0013 36.9 9.1 74 489-576 81-155 (326)
123 cd06570 GH20_chitobiase-like_1 52.7 81 0.0017 36.0 9.9 77 489-575 67-146 (311)
124 cd06563 GH20_chitobiase-like T 52.5 72 0.0016 36.9 9.7 77 489-575 85-164 (357)
125 PF01301 Glyco_hydro_35: Glyco 49.3 15 0.00032 41.9 3.4 21 490-510 63-83 (319)
126 PF14488 DUF4434: Domain of un 48.7 53 0.0012 34.0 7.0 24 491-514 66-89 (166)
127 cd02742 GH20_hexosaminidase Be 48.4 68 0.0015 36.2 8.4 76 489-575 71-147 (303)
128 cd00598 GH18_chitinase-like Th 47.5 33 0.00071 35.6 5.4 34 556-589 84-117 (210)
129 TIGR01370 cysRS possible cyste 47.4 91 0.002 35.7 9.2 99 470-587 65-171 (315)
130 PF00704 Glyco_hydro_18: Glyco 46.5 39 0.00085 37.8 6.2 47 557-603 96-152 (343)
131 cd02877 GH18_hevamine_XipI_cla 45.1 96 0.0021 34.8 8.9 78 490-604 59-148 (280)
132 cd06543 GH18_PF-ChiA-like PF-C 44.6 91 0.002 35.3 8.6 79 491-605 55-135 (294)
133 PF14701 hDGE_amylase: glucano 43.5 48 0.001 39.4 6.4 50 555-606 373-422 (423)
134 PLN02950 4-alpha-glucanotransf 42.9 4.5E+02 0.0097 34.6 15.4 57 218-275 154-218 (909)
135 cd06549 GH18_trifunctional GH1 41.4 49 0.0011 37.2 5.9 49 555-604 83-131 (298)
136 PF08533 Glyco_hydro_42C: Beta 40.9 26 0.00057 29.6 2.8 20 904-923 12-31 (58)
137 cd02879 GH18_plant_chitinase_c 40.7 53 0.0011 36.9 6.0 32 556-587 88-119 (299)
138 cd07944 DRE_TIM_HOA_like 4-hyd 40.4 1.8E+02 0.004 32.2 10.1 72 489-604 108-180 (266)
139 KOG3625 Alpha amylase [Carbohy 39.0 66 0.0014 41.3 6.7 61 557-627 510-570 (1521)
140 COG3280 TreY Maltooligosyl tre 38.9 12 0.00026 46.7 0.6 41 842-889 775-816 (889)
141 PF03644 Glyco_hydro_85: Glyco 38.8 19 0.00042 40.9 2.2 103 463-604 24-128 (311)
142 PF03198 Glyco_hydro_72: Gluca 38.2 40 0.00087 38.4 4.5 23 493-515 82-104 (314)
143 cd06548 GH18_chitinase The GH1 38.1 66 0.0014 36.4 6.4 30 556-585 105-134 (322)
144 cd02876 GH18_SI-CLP Stabilin-1 37.9 37 0.00081 38.3 4.3 29 556-584 88-116 (318)
145 smart00636 Glyco_18 Glycosyl h 35.9 78 0.0017 35.7 6.5 32 556-587 87-118 (334)
146 TIGR03849 arch_ComA phosphosul 35.4 55 0.0012 36.0 4.9 21 490-510 100-120 (237)
147 COG2342 Predicted extracellula 35.0 2.7E+02 0.0058 31.5 10.0 109 469-588 43-151 (300)
148 PF05913 DUF871: Bacterial pro 33.8 39 0.00085 39.3 3.7 25 489-513 46-70 (357)
149 cd06544 GH18_narbonin Narbonin 31.7 72 0.0016 35.2 5.2 28 559-586 96-123 (253)
150 PLN03059 beta-galactosidase; P 31.0 78 0.0017 40.7 5.8 21 489-509 97-117 (840)
151 cd06569 GH20_Sm-chitobiase-lik 31.0 1.3E+02 0.0028 36.1 7.5 29 489-517 96-125 (445)
152 PF15640 Tox-MPTase4: Metallop 30.9 55 0.0012 32.5 3.5 24 487-510 19-42 (132)
153 cd02872 GH18_chitolectin_chito 30.4 90 0.002 35.8 5.9 31 556-586 92-122 (362)
154 PF13204 DUF4038: Protein of u 30.3 76 0.0016 35.7 5.1 34 470-514 77-110 (289)
155 PF13860 FlgD_ig: FlgD Ig-like 29.4 2.3E+02 0.005 25.5 7.2 57 218-276 13-77 (81)
156 PF15260 FAM219A: Protein fami 28.9 22 0.00048 35.0 0.5 8 56-63 112-119 (125)
157 cd06565 GH20_GcnA-like Glycosy 28.7 90 0.0019 35.3 5.4 72 489-576 59-131 (301)
158 COG3589 Uncharacterized conser 27.2 50 0.0011 38.0 2.9 23 490-512 49-71 (360)
159 cd03174 DRE_TIM_metallolyase D 27.2 3.6E+02 0.0078 29.1 9.6 75 489-605 114-189 (265)
160 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.0 3.6E+02 0.0079 30.0 9.7 73 489-603 117-190 (275)
161 PF02679 ComA: (2R)-phospho-3- 26.6 81 0.0018 34.9 4.4 22 490-511 113-134 (244)
162 PRK12858 tagatose 1,6-diphosph 26.4 6E+02 0.013 29.5 11.5 69 488-588 141-211 (340)
163 PF00490 ALAD: Delta-aminolevu 26.1 1.4E+02 0.003 34.3 6.2 156 335-604 28-185 (324)
164 TIGR03356 BGL beta-galactosida 25.8 1.3E+02 0.0029 35.7 6.3 24 488-511 92-115 (427)
165 PF13167 GTP-bdg_N: GTP-bindin 24.9 4.8E+02 0.01 24.8 8.6 71 488-600 9-79 (95)
166 cd03409 Chelatase_Class_II Cla 24.7 63 0.0014 29.6 2.8 27 368-394 45-71 (101)
167 cd02878 GH18_zymocin_alpha Zym 24.1 1.2E+02 0.0026 34.8 5.5 29 557-585 88-116 (345)
168 PRK08195 4-hyroxy-2-oxovalerat 24.0 4.6E+02 0.01 30.2 10.1 41 562-603 144-185 (337)
169 cd07938 DRE_TIM_HMGL 3-hydroxy 24.0 5.9E+02 0.013 28.4 10.7 78 489-604 113-191 (274)
170 PRK10076 pyruvate formate lyas 23.6 1.8E+02 0.0038 31.4 6.2 20 489-508 192-211 (213)
171 TIGR03602 streptolysinS bacter 23.4 37 0.00079 28.3 0.7 11 51-61 21-31 (56)
172 PF06051 DUF928: Domain of Unk 23.3 3.3E+02 0.0071 28.9 8.0 67 210-277 28-100 (189)
173 cd05816 CBM20_DPE2_repeat2 Dis 23.3 2.1E+02 0.0045 26.7 5.9 58 218-275 1-65 (99)
174 KOG0259 Tyrosine aminotransfer 22.9 1E+02 0.0022 36.2 4.4 43 490-532 219-262 (447)
175 PF00682 HMGL-like: HMGL-like 22.6 3.6E+02 0.0078 28.8 8.5 73 489-605 107-180 (237)
176 cd08560 GDPD_EcGlpQ_like_1 Gly 22.4 2.3E+02 0.0049 33.1 7.2 68 492-585 280-347 (356)
177 TIGR03217 4OH_2_O_val_ald 4-hy 21.9 5.3E+02 0.012 29.7 10.0 41 562-603 143-184 (333)
178 cd04824 eu_ALAD_PBGS_cysteine_ 21.8 3E+02 0.0065 31.6 7.7 53 335-391 22-74 (320)
179 cd07945 DRE_TIM_CMS Leptospira 21.5 5.9E+02 0.013 28.6 10.0 76 488-604 113-189 (280)
180 PF15394 DUF4616: Domain of un 21.4 84 0.0018 36.6 3.3 28 43-70 4-31 (537)
181 COG2730 BglC Endoglucanase [Ca 21.4 1.6E+02 0.0035 34.7 5.9 20 491-510 117-136 (407)
182 cd05817 CBM20_DSP Dual-specifi 21.3 1.9E+02 0.004 27.2 5.2 57 219-275 2-63 (100)
183 PLN02746 hydroxymethylglutaryl 21.1 4.8E+02 0.01 30.4 9.4 79 488-604 160-239 (347)
184 COG3867 Arabinogalactan endo-1 20.8 2.6E+02 0.0056 32.0 6.7 26 489-514 103-128 (403)
185 PF01212 Beta_elim_lyase: Beta 20.8 85 0.0019 35.3 3.3 24 488-511 143-166 (290)
186 cd03413 CbiK_C Anaerobic cobal 20.8 81 0.0017 30.1 2.6 34 362-395 36-69 (103)
187 PF07894 DUF1669: Protein of u 20.5 76 0.0016 35.8 2.7 22 489-511 135-157 (284)
188 cd07939 DRE_TIM_NifV Streptomy 20.4 6.2E+02 0.013 27.7 9.8 72 489-604 109-181 (259)
189 cd07940 DRE_TIM_IPMS 2-isoprop 20.3 6.1E+02 0.013 27.9 9.8 72 489-604 113-185 (268)
190 COG4874 Uncharacterized protei 20.2 3E+02 0.0064 30.6 6.9 63 488-559 55-118 (318)
No 1
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=8.4e-198 Score=1771.28 Aligned_cols=842 Identities=80% Similarity=1.307 Sum_probs=798.0
Q ss_pred cccccccccccccccCCCCccccCcccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCC
Q 002161 67 SSSSSMPLELSTSASDQDDDLGDSLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKG 146 (958)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~w~~~~~~~w~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (958)
+..+.+.+|++...+.++++ |++++|||||++||+|+++.++++++||||++|+|++++++|+|++..++|++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (970)
T PLN02877 72 SASSFFTLELSVPTSLFQDD----LLYSRAYWVTESIIAWNVDVGDGSCFLYASKTAGLSVSDDGVEGYDLVVKLEEDSG 147 (970)
T ss_pred CccccccccccccccCCcCc----cccceEEEecCceEEEccCCCCceEEEEEcCCCCeeeccCceeccceEEEeecCCC
Confidence 44445667778888888887 89999999999999999887788999999999999999999999998889988778
Q ss_pred CCChhhhhcCCcccccceeeeCCccchHHHHHhhhhc----cccccccccccccccccccccCCCCCCccEEeCCeEEEE
Q 002161 147 GLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGPLGALYAEETVSLY 222 (958)
Q Consensus 147 ~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~q~~~----~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~v~F~ 222 (958)
+|+++|++|||||++|+||+++...+++++|||||+| ++|.++++|+||+||+||++|+|+++|||++.+++++|+
T Consensus 148 ~l~~~~~~~~phl~~~~a~~~~~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~LGA~~~~~g~~F~ 227 (970)
T PLN02877 148 GLPPNVIEKFPHIRGYRAFKVPSTVDVKDLLKCQLAVAAFDADGKCTDATGLQLPGVLDDLFAYDGPLGAHFSKDAVSLY 227 (970)
T ss_pred CCCHhHHhcCccccCCcceeCCccccHHHHhhcceEEEEECCCCCEEccccccchhhhhhhccCCCCCcceEecCCEEEE
Confidence 9999999999999999999999888999999999997 799999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCCCCCCceEEeeccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcceeecccCCC
Q 002161 223 LWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR 302 (958)
Q Consensus 223 lWAPtA~~V~L~ly~~~~~~~~~~~~~M~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~ 302 (958)
||||+|++|+|++|+++.+..+...++|++.+|||++++++.++|.+|+|+|++|+|.+|++++++++||||++++.||.
T Consensus 228 VWAPtA~~V~L~lyd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~ 307 (970)
T PLN02877 228 LWAPTAQAVSLCLYDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGCYYVYEVSVYHPSTGKVETCYANDPYARGLSADGR 307 (970)
T ss_pred EECCCCCEEEEEEecCCCCccceEEecccCCCCEEEEEeccCCCCCeeEEEEeecccCCCcccccccCCccceEEecCCC
Confidence 99999999999999976554455678898889999999999999999999999999999988888999999999999999
Q ss_pred ceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCC
Q 002161 303 RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGL 382 (958)
Q Consensus 303 ~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGv 382 (958)
+|+++|+++..++|++|+.....+|...+++|+||||+||||||..+++++..+||||+||+|+++++|+||++|++|||
T Consensus 308 ~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGV 387 (970)
T PLN02877 308 RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGL 387 (970)
T ss_pred ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCC
Confidence 99999999989999999875334676778999999999999999999889999999999999999999999999999999
Q ss_pred ceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCC
Q 002161 383 THVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDG 462 (958)
Q Consensus 383 T~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~ 462 (958)
|||||||||||++++|.+.+++.+ ++..|..+++++++||+++.++++.+.
T Consensus 388 ThVeLLPvfDf~tvdE~~~~~~~~-----------------------------~~~~l~~~~~~s~~~q~~v~~~~~~d~ 438 (970)
T PLN02877 388 THVHLLPTFQFGSVDDEKENWKCV-----------------------------DPKELEKLPPDSEEQQAAITAIQDDDG 438 (970)
T ss_pred CEEEeCCccccCCccccccccccc-----------------------------ccchhccccccchhhhhcccccccCCC
Confidence 999999999999999988777655 456788999999999999999999999
Q ss_pred CCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCC
Q 002161 463 YNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDG 542 (958)
Q Consensus 463 ~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G 542 (958)
|||||||.|||+||+||+|+|+++.||+|||+||++||++||+||||||||||+++|++...++|++++|+||+|++.+|
T Consensus 439 yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G 518 (970)
T PLN02877 439 YNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDG 518 (970)
T ss_pred CCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCccc
Q 002161 543 FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGW 622 (958)
Q Consensus 543 ~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgW 622 (958)
.+.+++||+++|+||+||+|||+|+++||++||||||||||+|+||++++|++++++|++++++.++++|+++|||||||
T Consensus 519 ~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW 598 (970)
T PLN02877 519 FIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGW 598 (970)
T ss_pred CcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHH
Q 002161 623 DFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (958)
Q Consensus 623 d~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~ 702 (958)
++++++.++++++|+|.||++++||+||||+||+||||++|+++..|||++|++.+||+..+|+...++.+|++..|.||
T Consensus 599 ~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~ 678 (970)
T PLN02877 599 DFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQ 678 (970)
T ss_pred CCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999878899999999999999988877778888999999999
Q ss_pred hhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHhcCC-------------------
Q 002161 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------- 763 (958)
Q Consensus 703 ~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~------------------- 763 (958)
.||+||+++|.|++++|..++|+++..|+|+|++|+.+|.++||||++|||+||||.++++
T Consensus 679 ~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~a 758 (970)
T PLN02877 679 VGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATS 758 (970)
T ss_pred HHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998679999999999999999999999999999999765
Q ss_pred ------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHH
Q 002161 764 ------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHIL 837 (958)
Q Consensus 764 ------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~ 837 (958)
||||||+|+|++|||++++|||+||||||++||++++||||+||||+++|+++|++|+++|+||+++|++++|.
T Consensus 759 iv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~ 838 (970)
T PLN02877 759 IIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHIL 838 (970)
T ss_pred HHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcE
Q 002161 838 AALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEV 917 (958)
Q Consensus 838 ~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~ 917 (958)
.++++||+||+|||+||+||++++++|+++|.|+++|+.|++|||+|+|+++.+..++.+++|+.++.|+||||++++++
T Consensus 839 ~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~ 918 (970)
T PLN02877 839 AALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEV 918 (970)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccE
Confidence 99999999999999999999999999999999999999999999999999976544567899999999999999999999
Q ss_pred EEECCCCCCCceeccccchhccCC
Q 002161 918 SFVSPALQGKNLQLHPIQVAYILP 941 (958)
Q Consensus 918 ~~~lp~l~~~~~~L~~~~~~~~~~ 941 (958)
++++|.+.+.+++|||||+.+.|+
T Consensus 919 ~~~~~~~~~~~~~l~~v~~~~~d~ 942 (970)
T PLN02877 919 SFESPALKGRTLELHPVQVMSADE 942 (970)
T ss_pred EEecccccccceeecccccccccc
Confidence 999999999999999999988765
No 2
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4.5e-188 Score=1691.88 Aligned_cols=831 Identities=50% Similarity=0.857 Sum_probs=763.6
Q ss_pred CcccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCcccccceeeeC-
Q 002161 90 SLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVP- 168 (958)
Q Consensus 90 ~~~~~~a~w~~~~~~~w~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~- 168 (958)
+|++++|||||++||+|+++.++.+++||||++|+|+++++++.|++ .|+|++.+++|+++|++|||||++|+||+++
T Consensus 1 d~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~phl~~~~a~~~~~ 79 (898)
T TIGR02103 1 DLAGARAHWVDADTILWNVAENAPSVTLYYSPSAKLKFDSDGVFGGD-RIKLTPSSGGLSQDLKMKFPHLASYKAFKLPA 79 (898)
T ss_pred CCccceEEEecCceEEEecCCCccEEEEEECCCCCeeeccCcccccc-eEEeeccCCCCCHHHHhhCcccccCcceecCc
Confidence 47899999999999999988788999999999999999999988887 7889987789999999999999999999999
Q ss_pred CccchHHHHHhhhhc----cccccccccccccccccccccCCCCC---CccEEeCCeEEEEEEcCCCCeEEEEEecCCCC
Q 002161 169 AGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGP---LGALYAEETVSLYLWAPTAQSVSACIYRDPLG 241 (958)
Q Consensus 169 ~~~~~~~~l~~q~~~----~~g~~~~~t~vq~~~~lD~~y~~~~~---LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~ 241 (958)
+..+++++|||||+| ++|.++++|+||+||+||++|+|+++ |||++.+++++|+||||+|++|+|++|+....
T Consensus 80 ~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~ 159 (898)
T TIGR02103 80 DDANLRDLLKGQLVVVAYDANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKK 159 (898)
T ss_pred chhHHHHHhhccEEEEEECCCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCC
Confidence 677899999999997 79999999999999999999999887 99999999999999999999999999986432
Q ss_pred CCCceEEeec-c-CCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcceeecccCCCceEEeeCCCCCCCCccc
Q 002161 242 GNPLEVVQLK-E-NDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGW 319 (958)
Q Consensus 242 ~~~~~~~~M~-~-~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~~s~vvDl~~~~~~P~~W 319 (958)
....++|. . ..|||++++++.++|.+|+|+|++++|.+|++++.+++||||++++.++.+|+|+|+++..++|++|
T Consensus 160 --~~~~~~M~~~~~~GVWsv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~~W 237 (898)
T TIGR02103 160 --VETTLPMTRDSTSGVWSAEGGSSWKGAYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPEGW 237 (898)
T ss_pred --ccceEeCccCCCCCEEEEEECcCCCCCEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCCcch
Confidence 34678893 3 6899999999999999999999999999998888899999999999999999999999989999999
Q ss_pred cccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcc
Q 002161 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDR 399 (958)
Q Consensus 320 ~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~ 399 (958)
+.....+|.+.+++|+||||+||||||..++++++.+||||+||+|+++.+|+||++|++||||||||||||||++|+|.
T Consensus 238 ~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~ 317 (898)
T TIGR02103 238 DALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEE 317 (898)
T ss_pred hhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccc
Confidence 87622245456889999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred cccccccCCC-CCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCC
Q 002161 400 KENWKSVGSL-PGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGS 478 (958)
Q Consensus 400 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~s 478 (958)
+.++..++++ +.+|. .++.+. .|.......+....++.+.+.++++|+++.++++.+.|||||||.|||+||||
T Consensus 318 ~~~~~~~~~~~~~l~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegS 392 (898)
T TIGR02103 318 KEKVADIQQPFSKLCE--LNPDSK---SSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGS 392 (898)
T ss_pred cccccccccchhhhhc--cccccc---cccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChh
Confidence 8777655331 12221 112221 24333233334567888888999999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCH
Q 002161 479 YASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHY 558 (958)
Q Consensus 479 ygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~ 558 (958)
|+++|+++.||+|||+||++||++||+||||||||||+.+|+.. .++|++++|+||||++.+|.+++++||+|+|+||+
T Consensus 393 Yatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~-~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~ 471 (898)
T TIGR02103 393 YATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPND-RSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHR 471 (898)
T ss_pred hccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccC-cccccccCcHhhEeeCCCCCeecCCCCcCCCCCCH
Confidence 99999989999999999999999999999999999999998865 58999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCccccc
Q 002161 559 MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQ 638 (958)
Q Consensus 559 mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q 638 (958)
||+++|+|++++|+++|||||||||+|+|+++++|++++++|++++| ++|||||+|+++++..+.++.+++|
T Consensus 472 ~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~p--------di~l~GEgW~~~~~~~~~~~~~a~~ 543 (898)
T TIGR02103 472 MMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTP--------EIYFYGEGWDFGEVANNRRFINATQ 543 (898)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCC--------CEEEEecCCCcccccchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999984 6999999999999988889999999
Q ss_pred ccCCCCceeecchHHHHhhcCCCCCCC----CcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhc
Q 002161 639 FNLSGTGIGSFNDRIRDAMLGGSPFGP----PLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQL 714 (958)
Q Consensus 639 ~~l~gt~ig~fnDrlRdavrgg~~F~~----~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~ 714 (958)
.||++++||+||||+||+||||++|+. +..|||++|++.+||+. ++....++.+|++.+|+||.||+|||++|.|
T Consensus 544 ~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~-~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~ 622 (898)
T TIGR02103 544 LNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAH-HGLDAASKDGALHLADLTRLGMAGNLKDFVL 622 (898)
T ss_pred cccCCCCeEEeccchhhHhcCCCccccccccccCcceecCcccCCccc-ccccchhhhhhhhhHHHHHHhhcCccccccc
Confidence 999999999999999999999999986 57899999999999976 5555667788999999999999999999999
Q ss_pred cccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHhcCC-------------------------CeeeEe
Q 002161 715 TNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------GIPFFH 769 (958)
Q Consensus 715 ~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~-------------------------GiPfiy 769 (958)
++++|..++|+++ +|+|+|++|+.+|.++||||++|||+||||.++++ ||||||
T Consensus 623 ~~~~g~~~~g~~~-~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~h 701 (898)
T TIGR02103 623 TDHEGKVVTGEEL-DYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFH 701 (898)
T ss_pred ccccccccccccc-ccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHh
Confidence 9999999999998 89999999999999999999999999999999876 999999
Q ss_pred cCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 002161 770 CGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRI 849 (958)
Q Consensus 770 ~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~L 849 (958)
+|+|++|||++++|||+||||||++||++++||||+||||+++|+++|+.|+++|+||+++|++++|..++++||+||+|
T Consensus 702 aG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~l 781 (898)
T TIGR02103 702 AGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRI 781 (898)
T ss_pred cchHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCCCCCCce
Q 002161 850 RYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNL 929 (958)
Q Consensus 850 Rksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~l~~~~~ 929 (958)
|++||+||++++++|+++|.|+++|++|++|||+|+|+++.+. ...++|++++.|+||||++++++++ +|.+.+.+|
T Consensus 782 Rks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~--~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~~~~~~ 858 (898)
T TIGR02103 782 RSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQ--AGASLDPRYDGIVVIFNARPEEVTL-SPDFAGTGL 858 (898)
T ss_pred HhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCccc--cccccccccCeEEEEEcCCCccEEE-ecccCCCcE
Confidence 9999999999999999999999999999999999999986311 2368899999999999999999999 999889999
Q ss_pred eccccchhccCCC
Q 002161 930 QLHPIQVAYILPN 942 (958)
Q Consensus 930 ~L~~~~~~~~~~~ 942 (958)
+|||+|+++.++.
T Consensus 859 ~l~~~~~~~~d~~ 871 (898)
T TIGR02103 859 ELHAVQQASGDES 871 (898)
T ss_pred EEEecccccCccc
Confidence 9999999887763
No 3
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.2e-105 Score=988.37 Aligned_cols=598 Identities=28% Similarity=0.485 Sum_probs=470.4
Q ss_pred EEeeccCCCCChhhhhcCCcccccceeeeCCccchHHHHHhhhhccccccccccccccccccccccCCCCCCccEEeCCe
Q 002161 139 IELQEDKGGLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAVADRKCSDATGLQLPGILDELFSYDGPLGALYAEET 218 (958)
Q Consensus 139 ~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~q~~~~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~ 218 (958)
|+|.. ..++..++.+|++.. .+|.|.-.. + .+...+++| +||++|+|+++|||++.+++
T Consensus 269 ~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~--~------------~~~~~~~~~---~~d~~y~y~g~LGa~~~~~g 327 (1111)
T TIGR02102 269 VTIDT--DKKTVTVKGDFNLDK--SPYTVSYNE--V------------SVPTKQSWR---LKDEMYAYDGKLGAQLHEDG 327 (1111)
T ss_pred eeecC--CcceEEeeccCCccc--CCEEEEecc--c------------cchhhcchh---hhhhhhccCCCCCCEEecCC
Confidence 55554 567778888888873 345544210 0 011223444 79999999999999998665
Q ss_pred -EEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCC------CCCCcEEEEEEEEecCCCcccceeeec
Q 002161 219 -VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYVYEVSVYHPSALQIEKCYAN 290 (958)
Q Consensus 219 -v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~------~~~G~~Y~y~v~~~~p~~g~~e~~~v~ 290 (958)
++|+||||+|++|+|++|+..........++| +..+|||++++++ ++.|.+|+|+|+.. .++.+++
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~------~~~~~~~ 401 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRG------GDKVLAL 401 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECC------CceEEEe
Confidence 89999999999999999986433233457899 6788999999984 57899999999742 2457899
Q ss_pred Ccceeeccc-C---------CCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCC---CC
Q 002161 291 DPYARGLSS-D---------GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPD---FR 357 (958)
Q Consensus 291 DPYA~~ls~-n---------g~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~---~r 357 (958)
||||++++. + +.+|.|||+.. +.|++|+-. .+|...+++|+||||+|||+||. +++++.. .+
T Consensus 402 DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~--~~p~~~~~~--~~~~~~~~~d~vIYElHVrdFt~-d~~~~~~~~~~~ 476 (1111)
T TIGR02102 402 DPYAKSLAAWNDATSDDQIKVAKAAFVDPSS--LGPQELDFA--KIENFKKREDAIIYEAHVRDFTS-DPAIAGDLTAQF 476 (1111)
T ss_pred ChhheEEeccCcccccccCCCCceEEEcCcc--cCccccccc--cccccCCccceEEEEEechhhCc-CCCCCcccccCC
Confidence 999999985 4 25688898754 677777654 45666688999999999999995 4444443 47
Q ss_pred ccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchh
Q 002161 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 437 (958)
|||+||+++ |+||++||||||||||||++++++|.+......
T Consensus 477 Gtf~gl~ek-------LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~------------------------------- 518 (1111)
T TIGR02102 477 GTFAAFVEK-------LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERML------------------------------- 518 (1111)
T ss_pred cCHHHHHHh-------HHHHHHcCCCEEEEcCccccccccccccccccc-------------------------------
Confidence 999999764 899999999999999999999887644211000
Q ss_pred hhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCC-chhHHHHHHHHHHhhcCCEEEEEeeecccc
Q 002161 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS-CRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (958)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~-~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~ 516 (958)
.+. ...+.+||||+|.+||+|+++||++|..+ .|++|||+||++||++||+||||||||||+
T Consensus 519 ----~~~-------------~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~ 581 (1111)
T TIGR02102 519 ----DYA-------------SSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTA 581 (1111)
T ss_pred ----ccc-------------ccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 000 01235789999999999999999988655 799999999999999999999999999997
Q ss_pred CCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHH
Q 002161 517 GSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596 (958)
Q Consensus 517 ~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~ 596 (958)
.. +.|++++|+||++.+.+|...+++||++++++|+||+++|+|++++|+++|||||||||+|++++.++|+.+
T Consensus 582 ~~------~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~ 655 (1111)
T TIGR02102 582 KV------YIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIA 655 (1111)
T ss_pred cc------ccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHH
Confidence 63 457889999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCCC-ceeecchHHHHhhcCCCCCCCCccccccccc
Q 002161 597 KHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGL 675 (958)
Q Consensus 597 ~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt-~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~ 675 (958)
+.++++++| +++||||+|++...........+.|.++..+ ++|.|||++|++|||+..+. ..+||++|.
T Consensus 656 ~~~l~~~dP--------~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~--~~~gfi~G~ 725 (1111)
T TIGR02102 656 YKEAKAINP--------NIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNE--GQPAFITGG 725 (1111)
T ss_pred HHHHHHhCc--------CEEEEEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccc--cccccccCC
Confidence 999999984 6999999999742211122233455555433 69999999999999864432 346788773
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccc-cCCCCceeeeccccccc
Q 002161 676 LLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAY-ALCPTETISYVSAHDNE 754 (958)
Q Consensus 676 ~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~y-a~~P~~~iNyVs~HDn~ 754 (958)
. +... .+..++. |+|..| +.+|.++||||+||||+
T Consensus 726 ~--------~~~~-----------~l~~~i~-------------------------g~~~~~~~~~P~~~VnYV~aHDn~ 761 (1111)
T TIGR02102 726 A--------RNVQ-----------GIFKNIK-------------------------AQPHNFEADSPGDVVQYIAAHDNL 761 (1111)
T ss_pred c--------ccHH-----------HHHHhhc-------------------------CCccccccCCcccEEEEEecCCCC
Confidence 2 1111 1111111 222233 36899999999999999
Q ss_pred chHHHhcCC-----------------------------CeeeEecCccccccCCCC------------------------
Q 002161 755 TLFDVVSLK-----------------------------GIPFFHCGDEILRSKSLD------------------------ 781 (958)
Q Consensus 755 tL~D~l~~~-----------------------------GiPfiy~GdEigrSks~d------------------------ 781 (958)
||||+++++ ||||||+|+|++|||+++
T Consensus 762 TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~ 841 (1111)
T TIGR02102 762 TLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVD 841 (1111)
T ss_pred chHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccc
Confidence 999998752 999999999999999997
Q ss_pred ----------CCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q 002161 782 ----------RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRY 851 (958)
Q Consensus 782 ----------~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRk 851 (958)
+|||+|+||+|++||++.++ ..+|+. +.+++++||+||+|||
T Consensus 842 ~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~------------~~~~~~----------------~~~~~~y~~~LI~lRk 893 (1111)
T TIGR02102 842 GNPFRYPYFIHDSYDSSDAINRFDWEKATD------------ADAYPI----------------NNKTRDYTAGLIELRR 893 (1111)
T ss_pred cccccccccccccccCCCccceeccccccc------------ccccch----------------hHHHHHHHHHHHHHHh
Confidence 89999999999999997543 234543 2468999999999999
Q ss_pred cCcccccCchhhhhceeEEecCC----CCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCC
Q 002161 852 SSPLFRLRTANAIQERICFHNTG----PSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 852 sspafrlgt~~~i~~~v~f~~~g----~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~ 923 (958)
++|+||++++++|+++|.|++.. ..+.+++|+|.+.+.. .+.++|+||++.++++++||.
T Consensus 894 ~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~------------~~~~~V~~Na~~~~~~~~lp~ 957 (1111)
T TIGR02102 894 STDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATN------------GDIYAVFVNADDKARTLTLGE 957 (1111)
T ss_pred cCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCC------------CCeEEEEECCCCCCEEEECCC
Confidence 99999999999999999998763 1234789999997643 257999999999999999997
No 4
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=7e-94 Score=856.36 Aligned_cols=555 Identities=38% Similarity=0.723 Sum_probs=443.6
Q ss_pred cccccCCCCCCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEec
Q 002161 200 LDELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYH 278 (958)
Q Consensus 200 lD~~y~~~~~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~ 278 (958)
||+.|+|+++|||++.+++++|+||||+|++|+|++|+++.+..+...++| +..+|+|++.+++...|.+|+|+|+..
T Consensus 2 ~~~~~~~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~- 80 (605)
T TIGR02104 2 FDDKFYYDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCIN- 80 (605)
T ss_pred cccccCCCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcC-
Confidence 899999999999999999999999999999999999987654345568899 577899999999999999999999853
Q ss_pred CCCcccceeeecCcceeecccCCCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCc
Q 002161 279 PSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRG 358 (958)
Q Consensus 279 p~~g~~e~~~v~DPYA~~ls~ng~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG 358 (958)
+ ...+++||||+++..++..|.|+|++. +++.+|... ..|...+++++||||+|||+||..+++.. ..+|
T Consensus 81 ---~--~~~~~~DPya~~~~~~~~~s~v~d~~~--~~~~~w~~~--~~~~~~~~~~~vIYElhv~~ft~~~~~~~-~~~G 150 (605)
T TIGR02104 81 ---G--KWRETVDPYAKAVTVNGKRGAVIDLER--TNPEGWEKD--HRPRLENPEDAIIYELHIRDFSIHENSGV-KNKG 150 (605)
T ss_pred ---C--CeEEEcCCCcceeccCCCcEEEEcccc--cCccCcccc--cCCCCCChhHcEEEEEecchhccCCCCCc-CCCC
Confidence 1 235789999999999998999999864 567889875 33545678999999999999998665543 4599
Q ss_pred cccceeccc----hhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCcccc
Q 002161 359 GYLAFTLQN----SAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSF 434 (958)
Q Consensus 359 ty~g~tek~----s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 434 (958)
||+|++++. .+++++|+||++|||||||||||+++.++++..
T Consensus 151 ~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~---------------------------------- 196 (605)
T TIGR02104 151 KYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEED---------------------------------- 196 (605)
T ss_pred ceeeeeccCccccccchhHHHHHHHcCCCEEEeCCccccccccccc----------------------------------
Confidence 999999974 245689999999999999999999998754321
Q ss_pred chhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCC-chhHHHHHHHHHHhhcCCEEEEEeeec
Q 002161 435 ADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS-CRTIEFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 435 ~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~-~ri~Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
....+||||+|.+||+|+++||++|..+ .|++|||+||++||++||+||||||||
T Consensus 197 ------------------------~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 197 ------------------------PNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred ------------------------CCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 0124789999999999999999988644 689999999999999999999999999
Q ss_pred cccCCCCCCCCCccCCCCCcceEecCCCCcccc-CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHH
Q 002161 514 HLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH-STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST 592 (958)
Q Consensus 514 Ht~~~g~~~~~svldk~vP~YY~r~~~~G~~~~-stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~ 592 (958)
||++. ..+.+++++|+||++.+..|.+.+ +.|++++|++|+||+++|+|++++|+++|||||||||+|++++.++
T Consensus 253 H~~~~----~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~ 328 (605)
T TIGR02104 253 HTYSR----EESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIET 328 (605)
T ss_pred CccCC----CCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHH
Confidence 99753 234678889999999888887765 4577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCC-CceeecchHHHHhhcCCCCCCCCccccc
Q 002161 593 MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG-TGIGSFNDRIRDAMLGGSPFGPPLQQGF 671 (958)
Q Consensus 593 ~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~g-t~ig~fnDrlRdavrgg~~F~~~~~qgf 671 (958)
|++++++|+++. ++++||||+|+.+.... ......+.+..+ .+++.|||++|++|++ ..|+. ..+||
T Consensus 329 ~~~~~~~~~~~~--------p~~~ligE~w~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~rd~i~~-~~~~~-~~~~f 396 (605)
T TIGR02104 329 MNEIRKALNKID--------PNILLYGEGWDLGTPLP--PEQKATKANAYQMPGIAFFNDEFRDALKG-SVFHL-KKKGF 396 (605)
T ss_pred HHHHHHHHHhhC--------CCeEEEEccCCCCCCcc--hhhhhhhhccCCCCceEEECCcchhhhcC-Ccccc-ccCce
Confidence 999999999987 46999999998764211 000111111111 3689999999999997 44543 23567
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccc
Q 002161 672 VTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAH 751 (958)
Q Consensus 672 ~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~H 751 (958)
+.|.. +... .+...+.++. .|.+.. .....|.++|||++||
T Consensus 397 ~~g~~--------~~~~-----------~l~~~l~~~~-------------------~~~~~~-~~~~~p~~~vnyl~~H 437 (605)
T TIGR02104 397 VSGNP--------GTEE-----------TVKKGILGSI-------------------ELDAVK-PSALDPSQSINYVECH 437 (605)
T ss_pred ecCCC--------CcHH-----------HHHhheeCCh-------------------hhcccc-cccCChhheEEEEEec
Confidence 76521 1111 1111222221 111111 1235889999999999
Q ss_pred cccchHHHhcCC------------------------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 002161 752 DNETLFDVVSLK------------------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGL 807 (958)
Q Consensus 752 Dn~tL~D~l~~~------------------------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~Gl 807 (958)
||.||+|++.+. ||||||||||++|++.++.|+|+++|.+|+|+|+...
T Consensus 438 D~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~------- 510 (605)
T TIGR02104 438 DNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKA------- 510 (605)
T ss_pred CCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCccccc-------
Confidence 999999886531 9999999999999999999999999999999997421
Q ss_pred CCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEE
Q 002161 808 PPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIE 887 (958)
Q Consensus 808 P~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~ 887 (958)
+ -.+++++||+||+|||++|+|+.++...|...+.|.... .+++++|.|.
T Consensus 511 ---------~------------------~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~---~~~vla~~r~ 560 (605)
T TIGR02104 511 ---------T------------------FKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAE---PSGVIAYRLK 560 (605)
T ss_pred ---------c------------------chHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCC---CCcEEEEEEe
Confidence 0 035899999999999999999999999888888877532 3679999998
Q ss_pred cCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCC
Q 002161 888 DGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 888 d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~ 923 (958)
+.... ...+.++|++|.+++++++.+|.
T Consensus 561 ~~~~~--------~~~~~llVv~N~s~~~~~v~lp~ 588 (605)
T TIGR02104 561 DHANG--------DPWKDIIVIHNANPEPVDIQLPS 588 (605)
T ss_pred CCcCC--------CCcCeEEEEEeCCCCCeEEECCC
Confidence 64210 12357999999999999999985
No 5
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3.7e-91 Score=832.97 Aligned_cols=532 Identities=24% Similarity=0.348 Sum_probs=405.3
Q ss_pred CCCCCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEE-ecCCCcc
Q 002161 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (958)
Q Consensus 206 ~~~~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~-~~p~~g~ 283 (958)
...+|||++.+++++|+||||+|++|+|++|++... ...++| +..+|||++.+++..+|.+|+|+|+. +.|..|.
T Consensus 8 ~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~gvW~~~v~~~~~G~~Y~yrv~g~~~p~~g~ 84 (658)
T PRK03705 8 KPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENGQ---EQRYDLPARSGDIWHGYLPGARPGLRYGYRVHGPWQPAQGH 84 (658)
T ss_pred CCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCCC---eeeEeeeeccCCEEEEEECCCCCCCEEEEEEccccCcccCc
Confidence 456899999999999999999999999999986432 246788 56789999999999999999999984 4566554
Q ss_pred c--ceeeecCcceeecccCC----------------------CceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEE
Q 002161 284 I--EKCYANDPYARGLSSDG----------------------RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYE 339 (958)
Q Consensus 284 ~--e~~~v~DPYA~~ls~ng----------------------~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYE 339 (958)
. ...+++||||++++.+. ..+.|+| .+++|... ..| ..+++++||||
T Consensus 85 ~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d------~~~~W~~~--~~p-~~~~~~~vIYE 155 (658)
T PRK03705 85 RFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD------DHYDWEDD--APP-RTPWGSTVIYE 155 (658)
T ss_pred ccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec------CCCCCCCC--CCC-CCCccccEEEE
Confidence 2 34678999999997531 1233333 25678764 344 34789999999
Q ss_pred EEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCC
Q 002161 340 LHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNT 419 (958)
Q Consensus 340 lHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~ 419 (958)
+|||+||..+++++..++|||+|++++ .+|+||++||||||||||||++.+.++...
T Consensus 156 ~hvr~ft~~~~~~~~~~~Gtf~g~~~~-----~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~------------------ 212 (658)
T PRK03705 156 AHVRGLTYLHPEIPVEIRGTYAALGHP-----VMIAYLKQLGITALELLPVAQFASEPRLQR------------------ 212 (658)
T ss_pred EehhhhcccCCCCCccccccHHHhhcc-----cchHHHHHcCCCEEEecCcccCCCcccccc------------------
Confidence 999999987778888899999999874 358888889999999999999975321100
Q ss_pred CcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHH
Q 002161 420 FSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQAL 499 (958)
Q Consensus 420 ~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~al 499 (958)
....+||||+|.+||+|+++|||+++ .|++|||+||++|
T Consensus 213 ---------------------------------------~g~~~ywGYd~~~yfa~d~~ygt~~~--~~~~efk~LV~~~ 251 (658)
T PRK03705 213 ---------------------------------------MGLSNYWGYNPLAMFALDPAYASGPE--TALDEFRDAVKAL 251 (658)
T ss_pred ---------------------------------------cccccccCcccccccccccccCCCCc--chHHHHHHHHHHH
Confidence 01136899999999999999999875 6899999999999
Q ss_pred hhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCC-CcCCCCCCCHHHHHHHHHHHHHHHHhCCcc
Q 002161 500 NHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHST-CMNNTASEHYMVERLIIDDLLCWAVNYKVD 578 (958)
Q Consensus 500 H~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~st-c~~d~a~e~~mv~k~iiDsl~~W~~ey~ID 578 (958)
|++||+||||||||||++.+.......+..+.+.||++.+.+|.+.+++ |.+++|++||||+++|+|++++|+++||||
T Consensus 252 H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVD 331 (658)
T PRK03705 252 HKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVD 331 (658)
T ss_pred HHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999874322222234555555666677778877755 567889999999999999999999999999
Q ss_pred EEEEecCCCCcHH--HHHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCCCceeecchHHHHh
Q 002161 579 GFRFDLMGHIMKS--TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDA 656 (958)
Q Consensus 579 GFRfDl~~~i~~~--~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRda 656 (958)
|||||+|+++.+. ++.. ...++++.. +++ .++++||||+|+.+. .++|...+..+|+.|||+|||+
T Consensus 332 GFRfD~a~~l~~~~~~~~~-~~~~~ai~~--d~v-l~~~~ligE~Wd~~~--------~~~~~g~~~~~~~~~Nd~fRd~ 399 (658)
T PRK03705 332 GFRFDLATVLGRTPEFRQD-APLFTAIQN--DPV-LSQVKLIAEPWDIGP--------GGYQVGNFPPPFAEWNDHFRDA 399 (658)
T ss_pred EEEEEcHhhhCcCcccchh-hHHHHHHhh--Ccc-ccceEEEEecccCCC--------ChhhhcCCCcceEEEchHHHHH
Confidence 9999999999743 3322 222334432 223 268999999999764 2334444456899999999999
Q ss_pred hcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCcc
Q 002161 657 MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736 (958)
Q Consensus 657 vrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ 736 (958)
||+ |..+ ..+...++..+ + .|+.. .|..
T Consensus 400 ir~-----------f~~~--------~~~~~~~~~~~-----------l-----------------~gs~~-~~~~---- 427 (658)
T PRK03705 400 ARR-----------FWLH--------GDLPLGEFAGR-----------F-----------------AASSD-VFKR---- 427 (658)
T ss_pred HHH-----------HHcc--------CCCcHHHHHHH-----------H-----------------hcchh-hccc----
Confidence 997 3322 11122222111 1 22221 1211
Q ss_pred ccCCCCceeeecccccccchHHHhcCC-----------------------------------------------------
Q 002161 737 YALCPTETISYVSAHDNETLFDVVSLK----------------------------------------------------- 763 (958)
Q Consensus 737 ya~~P~~~iNyVs~HDn~tL~D~l~~~----------------------------------------------------- 763 (958)
....|..+||||++|||+||+|+++|.
T Consensus 428 ~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sq 507 (658)
T PRK03705 428 NGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQ 507 (658)
T ss_pred cCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 125789999999999999999977431
Q ss_pred CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHH
Q 002161 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (958)
Q Consensus 764 GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~ 843 (958)
||||||||||++|||.++.|+||++|.+|++||+... .++++++
T Consensus 508 G~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~------------------------------------~~l~~f~ 551 (658)
T PRK03705 508 GTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQAD------------------------------------RGLTAFT 551 (658)
T ss_pred CchHHHhhHHhccCCCCCCCCccCCCCccccccchhh------------------------------------hHHHHHH
Confidence 9999999999999999999999999999999997421 3689999
Q ss_pred HHHHHHHhcCcccccCch-hhhhceeEEecCCC------CCCC--cEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCC
Q 002161 844 SDVLRIRYSSPLFRLRTA-NAIQERICFHNTGP------SAVP--GVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSP 914 (958)
Q Consensus 844 k~Li~LRksspafrlgt~-~~i~~~v~f~~~g~------~~~~--gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~ 914 (958)
|+||+|||++|+||..++ +.+...+.|.+... +|.. ..++|.+. +.++|+||++.
T Consensus 552 k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~----------------~~~~v~~N~~~ 615 (658)
T PRK03705 552 AALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS----------------DRWLIAINATL 615 (658)
T ss_pred HHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC----------------CCEEEEECCCC
Confidence 999999999999999998 77878899976431 2222 34555553 24999999999
Q ss_pred CcEEEECCCCCCCceecc
Q 002161 915 TEVSFVSPALQGKNLQLH 932 (958)
Q Consensus 915 ~~~~~~lp~l~~~~~~L~ 932 (958)
++++++||. + .|++.
T Consensus 616 ~~~~~~lp~--~-~w~~~ 630 (658)
T PRK03705 616 EVTEIVLPE--G-EWHAI 630 (658)
T ss_pred CCeEEECCC--c-ceEEE
Confidence 999999996 3 45544
No 6
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-92 Score=832.21 Aligned_cols=545 Identities=30% Similarity=0.503 Sum_probs=426.4
Q ss_pred CCCCCccEE---eCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEE-ecCC
Q 002161 206 YDGPLGALY---AEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPS 280 (958)
Q Consensus 206 ~~~~LGa~~---~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~-~~p~ 280 (958)
...+||+++ .+.++.|++|+..|++|.|++|+.....++.+.++| .+.+.+|++.+|+...|+.|.|++.. ++|.
T Consensus 16 ~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~~y~yr~~g~~~~~ 95 (697)
T COG1523 16 KPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQVYGYRVHGPYDPE 95 (697)
T ss_pred CcccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCceeeEEEEecCCCcCCc
Confidence 456899998 448999999999999999999987644333334788 45667999999999999999999986 6666
Q ss_pred Cccc--ceeeecCcceeecccCCCce-----------EEeeCC----CC-------CCCC-ccccccccCCCCCCCCCCc
Q 002161 281 ALQI--EKCYANDPYARGLSSDGRRT-----------LLVNLD----SD-------TLKP-EGWDKLVYEKPDILSFSDI 335 (958)
Q Consensus 281 ~g~~--e~~~v~DPYA~~ls~ng~~s-----------~vvDl~----~~-------~~~P-~~W~~~~~~~P~~~~~~d~ 335 (958)
.|.. ......||||+.+..+-..+ ++.++. .. ...+ +.|+.. +|...+++++
T Consensus 96 ~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~---~~~~~p~~~~ 172 (697)
T COG1523 96 EGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWEND---KPPRIPWEDT 172 (697)
T ss_pred cCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccC---CCCCCCccce
Confidence 6643 34578999999997543211 001110 00 1112 578764 4444579999
Q ss_pred eEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccc
Q 002161 336 SIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFF 415 (958)
Q Consensus 336 vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~ 415 (958)
||||+|||+||..++.+++..||||+||+++.. |+|||+||||||+||||+++...++..
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~-----i~yLk~LGvtaVeLLPV~~~~~~~~l~--------------- 232 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVI-----IDYLKDLGVTAVELLPVFDFYDEPHLD--------------- 232 (697)
T ss_pred EEEEeeecccccCCCCCchhhccceehhccccH-----HHHHHHhCCceEEEecceEEecccccc---------------
Confidence 999999999999899999999999999999732 666777799999999999998754421
Q ss_pred cCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHH
Q 002161 416 GQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495 (958)
Q Consensus 416 ~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~m 495 (958)
.....+||||||.+||||+++|+++|+...||.|||.|
T Consensus 233 ------------------------------------------~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~m 270 (697)
T COG1523 233 ------------------------------------------KSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDM 270 (697)
T ss_pred ------------------------------------------ccccccccCCCcccccCCCccccCCCCcchHHHHHHHH
Confidence 01236999999999999999999999944799999999
Q ss_pred HHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcC-CCCCCCHHHHHHHHHHHHHHHHh
Q 002161 496 VQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMN-NTASEHYMVERLIIDDLLCWAVN 574 (958)
Q Consensus 496 V~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~-d~a~e~~mv~k~iiDsl~~W~~e 574 (958)
|++||++||+||||||||||++++...+...|.+++|.||+|.+++|.+.|+|||. .+|++||||+|+|+|||+||++|
T Consensus 271 V~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 271 VKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred HHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987655667889999999999999999999988666 56999999999999999999999
Q ss_pred CCccEEEEecCCCCcHHHH-HHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCC--Cceeecch
Q 002161 575 YKVDGFRFDLMGHIMKSTM-MKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG--TGIGSFND 651 (958)
Q Consensus 575 y~IDGFRfDl~~~i~~~~~-~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~g--t~ig~fnD 651 (958)
|||||||||+|+.+.+++| ..+...+-.+-+..+.+ ..+.+|+|.||.|+ ..+|...+. .+++.||+
T Consensus 351 ~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l--~~~kliAepwD~g~--------~gyqvG~Fpd~~~~aewng 420 (697)
T COG1523 351 YHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVL--SGVKLIAEPWDIGP--------GGYQVGNFPDSPRWAEWNG 420 (697)
T ss_pred hCCCceeecchhhccccccccccCcchhhhccCCccc--cCceeeecchhhcC--------CCcccccCCCccchhhhCC
Confidence 9999999999999999998 44444444333322223 35679999999886 345666666 67888999
Q ss_pred HHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccC
Q 002161 652 RIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYD 731 (958)
Q Consensus 652 rlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~ 731 (958)
++||.+|+ |+.|- .+....+.. ++.||.. .|+
T Consensus 421 ~~rD~vr~-----------F~~G~--------~~~~~~~a~----------------------------rl~gS~d-~~~ 452 (697)
T COG1523 421 RFRDDVRR-----------FWRGD--------AGLVGEFAK----------------------------RLAGSSD-LYK 452 (697)
T ss_pred cccccccc-----------eeeCC--------CccHHHHHH----------------------------HhhcCcc-hhh
Confidence 99999987 77762 122222222 2334432 222
Q ss_pred CCCccccCCCCceeeecccccccchHHHhcCC------------------------------------------------
Q 002161 732 GTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------------------------------------ 763 (958)
Q Consensus 732 g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~------------------------------------------------ 763 (958)
. .+..|.++||||++|||+||+|+++|+
T Consensus 453 ~----~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~t 528 (697)
T COG1523 453 R----NGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLAT 528 (697)
T ss_pred c----cCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHH
Confidence 1 236899999999999999999999875
Q ss_pred -----CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHH
Q 002161 764 -----GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILA 838 (958)
Q Consensus 764 -----GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~ 838 (958)
|+||+.+|||++||+.+++|+||++|++|++||+.+. + .+
T Consensus 529 lllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~---------------~--------------------~~ 573 (697)
T COG1523 529 LLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEA---------------N--------------------ND 573 (697)
T ss_pred HHhhcCCcccccccccccccccccccccCCcccceeccCccc---------------c--------------------HH
Confidence 9999999999999999999999999999999998200 0 36
Q ss_pred HHHHHHHHHHHHhcCcccccCchhhhh---ceeEEecCC------CCCC---CcEEEEEEEcCCCCCCCcccCCCCCCEE
Q 002161 839 ALENFSDVLRIRYSSPLFRLRTANAIQ---ERICFHNTG------PSAV---PGVIVMSIEDGHEGVPGLSQLDSNYSYI 906 (958)
Q Consensus 839 ~~~~~k~Li~LRksspafrlgt~~~i~---~~v~f~~~g------~~~~---~gviv~~~~d~~~~~~~~~~~d~~~d~i 906 (958)
++++.+.||+|||++|+||..++.+++ ..+.|.+.. .+|. ...++|.+++. .+.+
T Consensus 574 l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~-------------~~~~ 640 (697)
T COG1523 574 LVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGD-------------KERL 640 (697)
T ss_pred HHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCC-------------CccE
Confidence 899999999999999999998888865 356655421 1111 23555555442 3679
Q ss_pred EEEEeCCCCcEEEECCCCC
Q 002161 907 VVIFNSSPTEVSFVSPALQ 925 (958)
Q Consensus 907 vVv~N~s~~~~~~~lp~l~ 925 (958)
+|++|+..+++.+.+|...
T Consensus 641 lv~~N~~~~~~~~~lp~~~ 659 (697)
T COG1523 641 LVLINATAEPVEFELPEDE 659 (697)
T ss_pred EEEecCCccccceeccccc
Confidence 9999999999999999743
No 7
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=4.7e-89 Score=819.89 Aligned_cols=544 Identities=25% Similarity=0.403 Sum_probs=415.1
Q ss_pred CCCCCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEE-ecCCCcc
Q 002161 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (958)
Q Consensus 206 ~~~~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~-~~p~~g~ 283 (958)
...+|||++.+++++|+||||+|++|+|+||+.... .+...++| +..+|||++++++..+|.+|+|+|+. ++|..|.
T Consensus 3 ~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~~-~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~yrv~g~~~~~~g~ 81 (688)
T TIGR02100 3 MPFPLGATWDGQGVNFALFSANAEKVELCLFDAQGE-KEEARLPLPERTDDIWHGYLPGAQPGQLYGYRVHGPYDPENGH 81 (688)
T ss_pred CCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCCC-ceeeEEecccCCCCEEEEEECCCCCCCEEEEEEeeeeCCCCCc
Confidence 356899999999999999999999999999976432 34457889 67789999999999999999999984 6777664
Q ss_pred c--ceeeecCcceeecccCCC-----------------------------ceEEeeCCCCCCCCccccccccCCCCCCCC
Q 002161 284 I--EKCYANDPYARGLSSDGR-----------------------------RTLLVNLDSDTLKPEGWDKLVYEKPDILSF 332 (958)
Q Consensus 284 ~--e~~~v~DPYA~~ls~ng~-----------------------------~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~ 332 (958)
. +..+++||||++++.+.. +|.|+|. +..|... ...|. .++
T Consensus 82 ~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~------~~~w~~~-~~~p~-~~~ 153 (688)
T TIGR02100 82 RFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP------DFDWGGD-EQRPR-TPW 153 (688)
T ss_pred ccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC------CCCCCCc-ccCCC-CCc
Confidence 3 456899999999986521 4666664 2568652 12333 478
Q ss_pred CCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCc
Q 002161 333 SDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (958)
Q Consensus 333 ~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~ 412 (958)
+++||||+|||+|+..+++++...+|||+|++++ .+|+||++||||||||||||++.+.....
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~-----~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~------------ 216 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHP-----AMIDYLKKLGVTAVELLPVHAFIDDRHLL------------ 216 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhcc-----chhHHHHHcCCCEEEECCcccCCcccccc------------
Confidence 9999999999999988888888899999999985 35888888999999999999986421000
Q ss_pred ccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHH
Q 002161 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (958)
Q Consensus 413 ~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Ef 492 (958)
.....+||||+|.+||+|+++||++. +++||
T Consensus 217 ---------------------------------------------~~~~~~ywGYd~~~y~a~d~~y~~~g----~~~ef 247 (688)
T TIGR02100 217 ---------------------------------------------EKGLRNYWGYNTLGFFAPEPRYLASG----QVAEF 247 (688)
T ss_pred ---------------------------------------------ccCCCCccCcCcccccccChhhcCCC----CHHHH
Confidence 00113689999999999999999852 58999
Q ss_pred HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCC--CccccC-CCcCCCCCCCHHHHHHHHHHHH
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD--GFIEHS-TCMNNTASEHYMVERLIIDDLL 569 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~--G~~~~s-tc~~d~a~e~~mv~k~iiDsl~ 569 (958)
|+||++||++||+||||||||||+..+.......+.++.+.+|++.+.+ |.+.+. .|++++|++|+||+++|+|+++
T Consensus 248 k~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~ 327 (688)
T TIGR02100 248 KTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLR 327 (688)
T ss_pred HHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998765444445566666666666654 656554 5677889999999999999999
Q ss_pred HHHHhCCccEEEEecCCCCcHH-----HHHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCCC
Q 002161 570 CWAVNYKVDGFRFDLMGHIMKS-----TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT 644 (958)
Q Consensus 570 ~W~~ey~IDGFRfDl~~~i~~~-----~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt 644 (958)
+|+++|||||||||+|+++++. ++..+.+++++- ++ .++++||||+|+.+. .++|...+..
T Consensus 328 ~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d-----~~-~~~~~ligE~W~~~~--------~~~~~~~~~~ 393 (688)
T TIGR02100 328 YWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQD-----PV-LAQVKLIAEPWDIGP--------GGYQVGNFPP 393 (688)
T ss_pred HHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhC-----cc-cCCeEEEEeeecCCC--------CcccccCCCC
Confidence 9999999999999999998763 344555555541 11 367999999998653 1233333456
Q ss_pred ceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCccccc
Q 002161 645 GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKG 724 (958)
Q Consensus 645 ~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~G 724 (958)
+|+.|||+|||+||+ |+.| ..+....+.. .++|..
T Consensus 394 ~~~~~Nd~frd~ir~-----------f~~g--------~~~~~~~~~~-----------~l~gs~--------------- 428 (688)
T TIGR02100 394 GWAEWNDRYRDDMRR-----------FWRG--------DAGMIGELAN-----------RLTGSS--------------- 428 (688)
T ss_pred ceEEecHHHHHHHHH-----------HHcC--------CCCcHHHHHH-----------HHhCCH---------------
Confidence 799999999999996 6655 1223222222 222221
Q ss_pred ccccccCCCCccccCCCCceeeecccccccchHHHhcC---------------------------------------C--
Q 002161 725 SEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL---------------------------------------K-- 763 (958)
Q Consensus 725 s~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~---------------------------------------~-- 763 (958)
. .|. .....|..+||||++||++||+|+++| +
T Consensus 429 --~-~~~----~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~ 501 (688)
T TIGR02100 429 --D-LFE----HNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQ 501 (688)
T ss_pred --h-hcc----ccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHH
Confidence 1 121 112478899999999999999998654 0
Q ss_pred ------------CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCc
Q 002161 764 ------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKP 831 (958)
Q Consensus 764 ------------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p 831 (958)
||||||||||++|||.|++|+||+.|.+|+|||.... +
T Consensus 502 ~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~----------------~-------------- 551 (688)
T TIGR02100 502 QRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDE----------------G-------------- 551 (688)
T ss_pred HHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCccccc----------------c--------------
Confidence 9999999999999999999999999999999997421 1
Q ss_pred chhhHHHHHHHHHHHHHHHhcCcccccCchhhh------hceeEEecC------CCCCC---CcEEEEEEEcCCCCCCCc
Q 002161 832 QKSHILAALENFSDVLRIRYSSPLFRLRTANAI------QERICFHNT------GPSAV---PGVIVMSIEDGHEGVPGL 896 (958)
Q Consensus 832 ~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i------~~~v~f~~~------g~~~~---~gviv~~~~d~~~~~~~~ 896 (958)
..++++++|+||+|||++|+||.+++... ...|+|... .++|. ..+|+|.+.+....
T Consensus 552 ----~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~---- 623 (688)
T TIGR02100 552 ----DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPG---- 623 (688)
T ss_pred ----cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccC----
Confidence 14799999999999999999999988753 567889652 23342 37999999863211
Q ss_pred ccCCCCCCEEEEEEeCCCCcEEEECCCCCCCcee
Q 002161 897 SQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQ 930 (958)
Q Consensus 897 ~~~d~~~d~ivVv~N~s~~~~~~~lp~l~~~~~~ 930 (958)
+-....+.++|+||++.+.+++.||... ..|.
T Consensus 624 -~~~~~~~~~~v~~N~~~~~~~~~lP~~~-~~w~ 655 (688)
T TIGR02100 624 -GDPGADDSLLLLLNAGPEPVPFKLPGGG-GRWE 655 (688)
T ss_pred -CCCCCCCeEEEEECCCCCCeEEECCCCC-CcEE
Confidence 0001235699999999999999999743 3344
No 8
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.2e-78 Score=762.24 Aligned_cols=540 Identities=23% Similarity=0.295 Sum_probs=402.7
Q ss_pred CCCCCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEE-ecCCCcc
Q 002161 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (958)
Q Consensus 206 ~~~~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~-~~p~~g~ 283 (958)
+..||||++.+++|+|+||||+|++|+|+||+.+.. ....+++| .+.+|||++.+++...|++|.|+|.. +.|..|.
T Consensus 12 ~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~~-~~~~~~~l~~~~g~vW~~~i~~~~~g~~Ygyrv~g~~~p~~g~ 90 (1221)
T PRK14510 12 FREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWGV-REEARIKLPGRTGDVWHGFIVGVGPGARYGNRQEGPGGPGEGH 90 (1221)
T ss_pred CCCCCceEEECCeEEEEEECCCCCEEEEEEEECCCC-CeeEEEECCCCcCCEEEEEEccCCCCcEEEEEeccCCCccccc
Confidence 567999999999999999999999999999987543 23346788 67889999999999999999999974 3444332
Q ss_pred c--ceeeecCcceeecccCCC--c----------------eEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEcc
Q 002161 284 I--EKCYANDPYARGLSSDGR--R----------------TLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVR 343 (958)
Q Consensus 284 ~--e~~~v~DPYA~~ls~ng~--~----------------s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVr 343 (958)
. ....++||||+.++.... . +.++++......+++|... ..| ..++++.+|||+|||
T Consensus 91 rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~--~~~-~~~~~d~vIYE~hvr 167 (1221)
T PRK14510 91 RFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPR--SPL-HGDWDDSPLYEMNVR 167 (1221)
T ss_pred ccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCC--CCC-CCCcccCeEEEEccc
Confidence 1 235789999999976321 1 1122222111235688753 333 357899999999999
Q ss_pred ccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCccc
Q 002161 344 DFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSW 423 (958)
Q Consensus 344 dFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (958)
+|+..++..+...+|+|+++.++ ..|+||++||||+|||||||++.+.....
T Consensus 168 ~ft~~~~~~gg~~~Gt~~~l~~~-----~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~----------------------- 219 (1221)
T PRK14510 168 GFTLRHDFFPGNLRGTFAKLAAP-----EAISYLKKLGVSIVELNPIFASVDEHHLP----------------------- 219 (1221)
T ss_pred hhhccCCCCCcccCcHHhhcCCc-----hhHHHHHHcCCCEEEeCCccccCcccccc-----------------------
Confidence 99987777777899999999965 34777788899999999999875411000
Q ss_pred ceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcC
Q 002161 424 WIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIG 503 (958)
Q Consensus 424 ~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~G 503 (958)
.....+||||+|.+||+|+++||+. +++|||+||++||++|
T Consensus 220 ----------------------------------~~g~~~yWGY~~~~yfa~dp~yg~~-----~~~efk~lV~~~H~~G 260 (1221)
T PRK14510 220 ----------------------------------QLGLSNYWGYNTVAFLAPDPRLAPG-----GEEEFAQAIKEAQSAG 260 (1221)
T ss_pred ----------------------------------cccCcCcCCCCCCCCCCcChhhccC-----cHHHHHHHHHHHHHCC
Confidence 0011368999999999999999962 3789999999999999
Q ss_pred CEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCC--CCccccCCCc-CCCCCCCHHHHHHHHHHHHHHHHhCCccEE
Q 002161 504 LHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNS--DGFIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYKVDGF 580 (958)
Q Consensus 504 i~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~--~G~~~~stc~-~d~a~e~~mv~k~iiDsl~~W~~ey~IDGF 580 (958)
|+||||||||||++++.+.+...+..+.+.+|++.+. .+.+.+.++| +.+|++|++|+++|+|++++|++ ||||||
T Consensus 261 I~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGf 339 (1221)
T PRK14510 261 IAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGF 339 (1221)
T ss_pred CEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 9999999999999876554332344444444444442 3556666555 45699999999999999999999 999999
Q ss_pred EEecCCCC---cHHHHHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCCCCceeecchHHHHhh
Q 002161 581 RFDLMGHI---MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAM 657 (958)
Q Consensus 581 RfDl~~~i---~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRdav 657 (958)
|||+|+++ +.++|..++..|+++.++. + .+++++|||+|+.+.. .+|...+...++.|||+||++|
T Consensus 340 RfDla~~l~r~~~~f~~~~~~~l~ai~~d~--~-l~~~~ligE~Wd~~~~--------~~~~g~f~~~~~~~N~~frd~v 408 (1221)
T PRK14510 340 RLDLADELAREPDGFIDEFRQFLKAMDQDP--V-LRRLKMIAEVWDDGLG--------GYQYGKFPQYWGEWNDPLRDIM 408 (1221)
T ss_pred EEechhhhccCccchHHHHHHHHHHhCCCc--C-cccCcEEEecccCCCC--------ccccCCCCcceeeeccHHHHHH
Confidence 99999999 8999999999999998651 1 1356779999987642 2344434456899999999999
Q ss_pred cCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccc
Q 002161 658 LGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAY 737 (958)
Q Consensus 658 rgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~y 737 (958)
|+ |+.|. .+....+..+| .|+.. .|.. -
T Consensus 409 r~-----------f~~g~--------~~~~~~~a~~l----------------------------~gs~d-~~~~----~ 436 (1221)
T PRK14510 409 RR-----------FWLGD--------IGMAGELATRL----------------------------AGSAD-IFPH----R 436 (1221)
T ss_pred HH-----------HhcCC--------CchHHHHHHHH----------------------------hCcHh-hcCc----c
Confidence 97 55541 11122222222 22221 2221 0
Q ss_pred cCCCCceeeecccccccchHHHhcCC-----------------------------------------------------C
Q 002161 738 ALCPTETISYVSAHDNETLFDVVSLK-----------------------------------------------------G 764 (958)
Q Consensus 738 a~~P~~~iNyVs~HDn~tL~D~l~~~-----------------------------------------------------G 764 (958)
...|..+||||+|||++||+|+++|+ |
T Consensus 437 ~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~G 516 (1221)
T PRK14510 437 RRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPG 516 (1221)
T ss_pred CCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC
Confidence 24688999999999999999988730 9
Q ss_pred eeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHH
Q 002161 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFS 844 (958)
Q Consensus 765 iPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k 844 (958)
|||||||||+||||.|+.|+||+++.++.|+|...+ .+++++||
T Consensus 517 iP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~------------------------------------~~l~~f~k 560 (1221)
T PRK14510 517 VPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNED------------------------------------EELLSFFR 560 (1221)
T ss_pred CcEEecchhcccccCCCCCCCCCCCccccCCccccc------------------------------------HHHHHHHH
Confidence 999999999999999999999999999999996421 36899999
Q ss_pred HHHHHHhcCcccccCchhhhh-------ceeEEecC-C-----CCC---CCcEEEEEEEcCCCCCCCcccCCCCCCEEEE
Q 002161 845 DVLRIRYSSPLFRLRTANAIQ-------ERICFHNT-G-----PSA---VPGVIVMSIEDGHEGVPGLSQLDSNYSYIVV 908 (958)
Q Consensus 845 ~Li~LRksspafrlgt~~~i~-------~~v~f~~~-g-----~~~---~~gviv~~~~d~~~~~~~~~~~d~~~d~ivV 908 (958)
+||+|||++|+||.|++..+. ..|.++.. | ++| ....++|.+....+. . ...+.++|
T Consensus 561 ~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~----~---~~~~~~~v 633 (1221)
T PRK14510 561 RLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGE----R---QVDDRFAV 633 (1221)
T ss_pred HHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCC----C---CCCCeEEE
Confidence 999999999999999987653 35666541 1 122 234677777543211 0 01257999
Q ss_pred EEeCCCCcEEEECCC
Q 002161 909 IFNSSPTEVSFVSPA 923 (958)
Q Consensus 909 v~N~s~~~~~~~lp~ 923 (958)
+||++.++++++||.
T Consensus 634 ~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 634 LLNSHHEELTLHLPE 648 (1221)
T ss_pred EECCCCCCeEEECCh
Confidence 999999999999995
No 9
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.7e-72 Score=663.55 Aligned_cols=494 Identities=24% Similarity=0.393 Sum_probs=343.3
Q ss_pred EEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcceeec
Q 002161 219 VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL 297 (958)
Q Consensus 219 v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~l 297 (958)
|+|+||||+|++|+|+++. ..++| +..+|+|++++++...|.+|+|+|+. ...++||||+++
T Consensus 1 v~FrlwAP~A~~V~L~l~~--------~~~~m~k~~~GvW~~~v~~~~~G~~Y~y~v~g---------~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG--------ALHAMQRLGDGWFEITVPPVGPGDRYGYVLDD---------GTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeCC--------CEEeCeECCCCEEEEEECCCCCCCEEEEEEee---------eEEecCcccccc
Confidence 6899999999999999832 25788 67789999999999999999999963 247899999997
Q ss_pred ccC-CCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHH
Q 002161 298 SSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK 376 (958)
Q Consensus 298 s~n-g~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~ 376 (958)
... ...|.|+|++.+.|++.+|.. + +++++||||+|||+|+. .|+|.|++++ |+|
T Consensus 64 ~~~~~~~S~V~d~~~~~w~~~~~~~-----~---~~~~~viYE~hv~~f~~---------~G~~~gi~~~-------l~y 119 (542)
T TIGR02402 64 PDGVHGPSQVVDPDRYAWQDTGWRG-----R---PLEEAVIYELHVGTFTP---------EGTFDAAIEK-------LPY 119 (542)
T ss_pred ccCCCCCeEEecCcccCCCCccccC-----C---CccccEEEEEEhhhcCC---------CCCHHHHHHh-------hHH
Confidence 432 225899999877888888843 1 46899999999999985 4999999764 889
Q ss_pred HHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHh
Q 002161 377 LSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITA 456 (958)
Q Consensus 377 L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~ 456 (958)
|++|||||||||||+++..
T Consensus 120 l~~LGv~~i~L~Pi~~~~~------------------------------------------------------------- 138 (542)
T TIGR02402 120 LADLGITAIELMPVAQFPG------------------------------------------------------------- 138 (542)
T ss_pred HHHcCCCEEEeCccccCCC-------------------------------------------------------------
Confidence 9999999999999998753
Q ss_pred hcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceE
Q 002161 457 IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL 536 (958)
Q Consensus 457 ~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~ 536 (958)
..||||++.+||+|+++||+ ++|||+||++||++||+||||||||||+.++. .++.+.| ||+
T Consensus 139 -----~~~~GY~~~~~~~~~~~~G~-------~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-----~~~~~~~-y~~ 200 (542)
T TIGR02402 139 -----TRGWGYDGVLPYAPHNAYGG-------PDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-----YLPRYAP-YFT 200 (542)
T ss_pred -----CCCCCCCccCccccccccCC-------HHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-----cccccCc-ccc
Confidence 26999999999999999999 56999999999999999999999999976543 3556677 775
Q ss_pred ecCCCCccccCCCcCCCCCCCH---HHHHHHHHHHHHHHHhCCccEEEEecCCCCcH----HHHHHHHHHHHhhcccccC
Q 002161 537 RRNSDGFIEHSTCMNNTASEHY---MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLTKEIHG 609 (958)
Q Consensus 537 r~~~~G~~~~stc~~d~a~e~~---mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~----~~~~~~~~al~~i~~~~~~ 609 (958)
+.. .+.|++++|++|+ ||+++|+|++++|+++|||||||||++.+++. .+|.+++++|+++.|+.
T Consensus 201 ~~~------~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~-- 272 (542)
T TIGR02402 201 DRY------STPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAEL-- 272 (542)
T ss_pred CCC------CCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCC--
Confidence 321 2456788999999 99999999999999999999999999988853 48999999999998631
Q ss_pred cCCCCceEeCcccccccccccccCcccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHH
Q 002161 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAV 689 (958)
Q Consensus 610 ~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~ 689 (958)
+.++|+||.|....... . ....+ .....+.||+.+|+++++- +. ...+||..+. .. +.+.
T Consensus 273 ---~~~~li~E~~~~~~~~~-~----~~~~~-~~~~d~~~~~~~~~~~~~~--~~-g~~~g~~~~~-------~~-~~~~ 332 (542)
T TIGR02402 273 ---RPVHLIAESDLNDPSLV-T----PREDG-GYGLDAQWNDDFHHALHVL--LT-GERQGYYADF-------GD-PLAA 332 (542)
T ss_pred ---ceEEEEEecCCCCCccc-c----cccCC-ccceEEEECchHHHHHHHH--hc-CCcceeeccc-------Cc-CHHH
Confidence 34999999984322110 0 00000 0013578999999999961 21 1123444321 00 2222
Q ss_pred HHHHHHHhHhhHHhhcc--ccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccc---ccchHHHhcC--
Q 002161 690 EEQMLAAAKDHIQVGLA--ANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHD---NETLFDVVSL-- 762 (958)
Q Consensus 690 ~~~~L~~~~d~i~~gla--gnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HD---n~tL~D~l~~-- 762 (958)
+.. .+..|.. |....|. + ...|.|.+. ..|.+.|||++||| |.|+++.+..
T Consensus 333 l~~-------~l~~g~~~~~~~~~~~----------~----~~~~~~~~~-~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~ 390 (542)
T TIGR02402 333 LAK-------TLRDGFVYDGEYSPFR----------G----RPHGRPSGD-LPPHRFVVFIQNHDQIGNRALGERLSQLL 390 (542)
T ss_pred HHH-------HHHHhcccCccccccc----------c----ccCCCCCCC-CCHHHEEEEccCcccccccchhhhhhhcC
Confidence 221 2222211 1111110 0 012223332 35788999999999 6666665432
Q ss_pred ---------------CCeeeEecCccccccCCCCC-CCCCC-----------CCCcccccCCCCCCCCCCCCCCC----C
Q 002161 763 ---------------KGIPFFHCGDEILRSKSLDR-DSYNS-----------GDWLNRIDFSYNSNNWGVGLPPK----E 811 (958)
Q Consensus 763 ---------------~GiPfiy~GdEigrSks~d~-nsY~s-----------gD~~N~~dw~~~~n~w~~GlP~~----~ 811 (958)
.||||||||+|+|++|...- ..+.. -..|..+.|.. . .+..|.. .
T Consensus 391 ~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~---~-~~pdp~~~~~~~ 466 (542)
T TIGR02402 391 SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDP---E-DVPDPQDEETFL 466 (542)
T ss_pred CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhccccc---c-cCCCCCchhhHh
Confidence 29999999999999987310 00000 00111111110 0 0000100 1
Q ss_pred cCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCC
Q 002161 812 KNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHE 891 (958)
Q Consensus 812 ~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~ 891 (958)
.|...|.... ...-.+++++||+||+|||++|+||+++.+.+...+ .. .++++++.. +.
T Consensus 467 ~~~~~W~~~~-----------~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~---~~----~~~~~~~~~--~~- 525 (542)
T TIGR02402 467 RSKLDWAEAE-----------SGEHARWLAFYRDLLALRRELPVLLLPGARALEVVV---DE----DPGWVAVRF--GR- 525 (542)
T ss_pred hccCCccccc-----------ccchHHHHHHHHHHHHHhccCccccCCCcccceeee---cC----CCCEEEEEE--CC-
Confidence 1233343210 011247999999999999999999999987765533 11 256888883 21
Q ss_pred CCCCcccCCCCCCEEEEEEeCCCCcEEE
Q 002161 892 GVPGLSQLDSNYSYIVVIFNSSPTEVSF 919 (958)
Q Consensus 892 ~~~~~~~~d~~~d~ivVv~N~s~~~~~~ 919 (958)
+.++|++|.+++++++
T Consensus 526 ------------~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 526 ------------GELVLAANLSTSPVAV 541 (542)
T ss_pred ------------CeEEEEEeCCCCCcCC
Confidence 5699999999987654
No 10
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-71 Score=644.24 Aligned_cols=656 Identities=28% Similarity=0.376 Sum_probs=470.6
Q ss_pred cccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCcccccceeeeCCc
Q 002161 91 LLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVPAG 170 (958)
Q Consensus 91 ~~~~~a~w~~~~~~~w~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~ 170 (958)
.-..|++|++...++|+..... +-.++...++.. .+..++|+.....++..+.++++++..|. ++..
T Consensus 5 ~~~sr~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~-------~~~~~~~e~~~~~~p~~~ve~~~~~d~~~---~~~~ 71 (757)
T KOG0470|consen 5 LISSRFYWHTKLVIVWSVDTLE---KTGALKPAKLEF-------YDLRSALEAKSGDLPADVVEKFYEIDPFL---VPFA 71 (757)
T ss_pred hhhhcceecccceEEeeeeccc---cccccccccccc-------hhhHHHhhhhcCCCChHHhhccccccccc---cccc
Confidence 3457899999999999876322 222223333322 22234555555778878899999999775 5555
Q ss_pred cchHHHHHhhhhc--cccccccccccccccccccccCCCCCCccEEeCCe-EEEEEEcCCCCeEEEE-EecCCCCCCCce
Q 002161 171 SDAKLLLKCQLAV--ADRKCSDATGLQLPGILDELFSYDGPLGALYAEET-VSLYLWAPTAQSVSAC-IYRDPLGGNPLE 246 (958)
Q Consensus 171 ~~~~~~l~~q~~~--~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~-v~F~lWAPtA~~V~L~-ly~~~~~~~~~~ 246 (958)
..++..++.+..+ -+++ ..-|++.+++. |+ +||++.+.++ +.|..|||.|+.|+|+ .||.|+. .
T Consensus 72 ~~~~~~~~~~~~~~~f~~~----~~~~l~~~~~~---y~-~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~----~ 139 (757)
T KOG0470|consen 72 LFLRERYKQLDDGLEFIGK----SEGGLSAFSRG---YE-PLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP----S 139 (757)
T ss_pred ccchhhHHHHHHHhhhhhh----ccCChhhhhcc---cc-ccceeccCCCceeeeeecccccccccccccCCCCC----c
Confidence 5666666665543 1221 12566777766 33 8999998776 9999999999999999 5667753 2
Q ss_pred EEee--ccCCCEEEEEeCCC--CCCcEEEEEEEEecCCCcccceeeecCcceeecccCCCceEEeeCCCCCCCCcccccc
Q 002161 247 VVQL--KENDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKL 322 (958)
Q Consensus 247 ~~~M--~~~~GvWsv~~~~~--~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~~s~vvDl~~~~~~P~~W~~~ 322 (958)
...| +.+.|+|++.++.. +.+..+.+.+...++.+...+.+..+|||++.+...+...+.+.+......+++|+..
T Consensus 140 ~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~ 219 (757)
T KOG0470|consen 140 SNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFK 219 (757)
T ss_pred ccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCccccccc
Confidence 3333 67889999999965 7777777777766666555567889999999999888888877666556667899875
Q ss_pred ccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCccccc
Q 002161 323 VYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKEN 402 (958)
Q Consensus 323 ~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~ 402 (958)
. .+|.. +.++++|||+|||+||.+++++.. +|.|++|++|. ++|||+| |+|||||||||++..
T Consensus 220 ~-~~p~~-P~~sL~IYE~HVrgfS~~E~~v~~--~~gY~~FteKv---lphlK~L---G~NaiqLmpi~Ef~~------- 282 (757)
T KOG0470|consen 220 H-SRPKI-PESSLRIYELHVRGFSSHESKVNT--RGGYLGFTEKV---LPHLKKL---GYNAIQLMPIFEFGH------- 282 (757)
T ss_pred C-CCCCC-ChhheEEEEEeeccccCCCCcccc--ccchhhhhhhh---hhHHHHh---CccceEEeehhhhhh-------
Confidence 2 33322 334999999999999999888765 55599999973 6666555 999999999999841
Q ss_pred ccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCC
Q 002161 403 WKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASN 482 (958)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~ 482 (958)
...+|||.|++||||.++|||
T Consensus 283 ----------------------------------------------------------~~~s~GY~~~nFFapssrYgt- 303 (757)
T KOG0470|consen 283 ----------------------------------------------------------YYASWGYQVTNFFAPSSRYGT- 303 (757)
T ss_pred ----------------------------------------------------------hhhccCcceeEeecccccccC-
Confidence 015899999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHH
Q 002161 483 PNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVER 562 (958)
Q Consensus 483 ~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k 562 (958)
|+.+.||.|||+||++||.+||.||||||+||+++ ++.+..++||+++|++|++.++ +.+.+++|.+.+|++|+||++
T Consensus 304 ~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~-r~~h~~~~~r~fn~~~~~V~r 381 (757)
T KOG0470|consen 304 PESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP-RGYHNSWCSRLFNYNHPVVLR 381 (757)
T ss_pred CCcccchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC-cccccccccccccCCCHHHHH
Confidence 55588999999999999999999999999999998 6667778899999888888777 667889999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCcccccccccccccCcccccccCC
Q 002161 563 LIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLS 642 (958)
Q Consensus 563 ~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~ 642 (958)
||+|+|++|++||||||||||+|++|.+....-+ .+++|.-++.+|+.|++.+++...+...|.+..+.
T Consensus 382 flL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~-----------~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~ 450 (757)
T KOG0470|consen 382 FLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNA-----------AGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLG 450 (757)
T ss_pred HHHHHHHHHHHheeccceEEcchhhhhhhccccc-----------cccCCcchhhhccCCCcccccHHHHHHhhcchhhh
Confidence 9999999999999999999999999887542211 11344556777777777776655555666666666
Q ss_pred CCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCccc
Q 002161 643 GTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKV 722 (958)
Q Consensus 643 gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~ 722 (958)
++. +.++++.+.+=-.+.+ ..|..||++..... .+..+.+....+ .+|.+ . .+-+.+
T Consensus 451 ~~~-~~It~~~D~~gm~~~~-~~P~~~g~~~~d~~------------yr~~~~~~~k~~-~~Lk~----~----~~~~~~ 507 (757)
T KOG0470|consen 451 GTP-GLITDAEDVSGMPGLG-CFPVWQGGAGFDGL------------YRLAVRLFDKWI-QLLKG----S----SDAEWI 507 (757)
T ss_pred cCC-cceEeeeccccCCCcC-Cccccccccccchh------------hhHHhhhHHHHH-HHhcc----C----chhhee
Confidence 555 3444443332222111 23444554432100 000000000011 11111 0 111244
Q ss_pred ccccccccCCCCccccCCCCceeeecccccccchHHHhcCC---------------------------------------
Q 002161 723 KGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK--------------------------------------- 763 (958)
Q Consensus 723 ~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~--------------------------------------- 763 (958)
.|+..+...+ ...|...|||+++||..++.|+.+++
T Consensus 508 ~gs~~~~ltN-----~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~ 582 (757)
T KOG0470|consen 508 MGSIDYTLTN-----RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLG 582 (757)
T ss_pred ccCcceeeec-----cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHh
Confidence 4542211111 14588899999999999888843322
Q ss_pred ---CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHH
Q 002161 764 ---GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAAL 840 (958)
Q Consensus 764 ---GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~ 840 (958)
|+|++|||+|+|+++.+|+++|.++.|++.. ++++.|..+|++++.+...+++++.+.
T Consensus 583 lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~-------------r~~~f~~~~~~~~r~~~~l~~F~~~~~------ 643 (757)
T KOG0470|consen 583 LGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYA-------------RRKRFDLADSDLLRYRRQLNSFDREMN------ 643 (757)
T ss_pred ccCccceeccccccCCccccCCCcccCCcccccc-------------CccccccccchhhhhhhhhhhhhhHHH------
Confidence 9999999999999999999999866555544 445667888888887666666665532
Q ss_pred HHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEE
Q 002161 841 ENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFV 920 (958)
Q Consensus 841 ~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~ 920 (958)
.-++...+.+.++...+...++.+.+.|... +.+++|.+.++.. +..+.|-||+..+...+-
T Consensus 644 --~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~-----~~~~vfn~h~~~s-----------~~d~~vg~n~~~~~~iVl 705 (757)
T KOG0470|consen 644 --LLEERNGFTTSELQYISLKHEADEVIVFERG-----PLLFVFNFHDSNS-----------YIDYRVGFNAPGKYTIVL 705 (757)
T ss_pred --HHHHhccccccccccccccchhhheeeeccC-----CeEEEEEecCCCC-----------CceeEEEecCCCceEEEE
Confidence 2356677778899999999999999999743 6799999998764 356899999999988888
Q ss_pred CCCCC
Q 002161 921 SPALQ 925 (958)
Q Consensus 921 lp~l~ 925 (958)
+|...
T Consensus 706 ~sd~p 710 (757)
T KOG0470|consen 706 NSDRP 710 (757)
T ss_pred CCCCC
Confidence 87643
No 11
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=6.2e-64 Score=599.12 Aligned_cols=303 Identities=23% Similarity=0.363 Sum_probs=242.8
Q ss_pred CCccEEeC----CeEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-cc-CCCEEEEEeCCCCCCcEEEEEEEEecCCC
Q 002161 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (958)
Q Consensus 209 ~LGa~~~~----~~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~ 281 (958)
.||||+.. ++++||||||+|++|+|++ |+.+.+ ...+| +. .+|+|++.+++..+|.+|+|+|+.. .
T Consensus 16 ~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~---~ 88 (613)
T TIGR01515 16 LLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDG----REHPMRRRNDNGIWELFIPGIGEGELYKYEIVTN---N 88 (613)
T ss_pred hcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCC----ceecceEecCCCEEEEEeCCCCCCCEEEEEEECC---C
Confidence 69999987 7999999999999999996 665543 34577 33 5799999999999999999999732 1
Q ss_pred cccceeeecCcceeecccCCC-ceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccc
Q 002161 282 LQIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (958)
Q Consensus 282 g~~e~~~v~DPYA~~ls~ng~-~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty 360 (958)
| +...++||||+.+..++. .|+|+|++.+.|.|.+|... ++|.....++++|||+|||+|+.. |+|
T Consensus 89 g--~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~~w~~~--~~~~~~~~~~~~iYe~hv~~~~~~---------g~~ 155 (613)
T TIGR01515 89 G--EIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQKWQEK--RKAKTPYEKPVSIYELHLGSWRHG---------LSY 155 (613)
T ss_pred C--cEEEeCCCCEeeeccCCCCcEEEECCccCccCchhhhhc--ccccCcccCCceEEEEehhhccCC---------CCH
Confidence 2 345789999999987654 78999999899999999874 444333345789999999999742 999
Q ss_pred cceeccchhhhhhH-HHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhh
Q 002161 361 LAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439 (958)
Q Consensus 361 ~g~tek~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 439 (958)
.+++++ | +||++||||+||||||+++..
T Consensus 156 ~~i~~~-------l~dyl~~LGvt~i~L~Pi~e~~~-------------------------------------------- 184 (613)
T TIGR01515 156 RELADQ-------LIPYVKELGFTHIELLPVAEHPF-------------------------------------------- 184 (613)
T ss_pred HHHHHH-------HHHHHHHcCCCEEEECCcccCCC--------------------------------------------
Confidence 998764 5 889999999999999998752
Q ss_pred hhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCC
Q 002161 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSG 519 (958)
Q Consensus 440 l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g 519 (958)
..||||++.+||+|+++||| .+|||+||++||++||+|||||||||++.++
T Consensus 185 ----------------------~~~wGY~~~~y~~~~~~~Gt-------~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 185 ----------------------DGSWGYQVTGYYAPTSRFGT-------PDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred ----------------------CCCCCCCcccCcccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 25899999999999999999 4689999999999999999999999998653
Q ss_pred CCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc----------
Q 002161 520 PFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM---------- 589 (958)
Q Consensus 520 ~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~---------- 589 (958)
.. ...++.. |.|++.....+.. +.++..++|++|++|+++|++++++|+++|||||||||+|.++.
T Consensus 236 ~~--~~~~~~~-~~y~~~~~~~~~~-~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~ 311 (613)
T TIGR01515 236 HG--LAEFDGT-PLYEHKDPRDGEH-WDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGE 311 (613)
T ss_pred ch--hhccCCC-cceeccCCccCcC-CCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccc
Confidence 31 1123322 3344432222222 22345688999999999999999999999999999999986542
Q ss_pred --------------HHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 590 --------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 590 --------------~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
.++|+++++.|+++.| +++++||.+.
T Consensus 312 ~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p--------~~~liaE~~~ 351 (613)
T TIGR01515 312 WSPNEDGGRENLEAVDFLRKLNQTVYEAFP--------GVVTIAEEST 351 (613)
T ss_pred ccccccCCcCChHHHHHHHHHHHHHHHHCC--------CeEEEEEeCC
Confidence 4789999999999984 6999999763
No 12
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.9e-63 Score=604.87 Aligned_cols=310 Identities=22% Similarity=0.313 Sum_probs=247.1
Q ss_pred CCCccEEeC----CeEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-cc-CCCEEEEEeCCCCCCcEEEEEEEEecCC
Q 002161 208 GPLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPS 280 (958)
Q Consensus 208 ~~LGa~~~~----~~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvWsv~~~~~~~G~~Y~y~v~~~~p~ 280 (958)
..|||++.. ++++||||||.|++|+|+. |+.|.+ ...+| +. .+|+|++++++...|..|+|+|+..
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~--- 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRLRGESGVWELFIPGLGEGELYKFEILTA--- 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCC----ccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCC---
Confidence 479999985 7999999999999999996 776643 24577 44 7899999999999999999999741
Q ss_pred CcccceeeecCcceeecccC-CCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCcc
Q 002161 281 ALQIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGG 359 (958)
Q Consensus 281 ~g~~e~~~v~DPYA~~ls~n-g~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGt 359 (958)
.| +...+.||||+.+..+ ...|+|+|++.+.|++.+|... +++.....++++|||+|||+|+.. .+....|+
T Consensus 191 ~g--~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~---~~~~~~g~ 263 (726)
T PRK05402 191 DG--ELLLKADPYAFAAEVRPATASIVADLSQYQWNDAAWMEK--RAKRNPLDAPISIYEVHLGSWRRH---EDGGRFLS 263 (726)
T ss_pred CC--cEeecCCCceEEEecCCCCcEEEeCCccCCCCCcchhhc--ccccCcccCCcEEEEEehhhhccC---CCCCcccC
Confidence 23 3456899999999876 3468999999899999999764 333334568899999999999975 12345689
Q ss_pred ccceeccchhhhhhH-HHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhh
Q 002161 360 YLAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAE 438 (958)
Q Consensus 360 y~g~tek~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 438 (958)
|.+++++ | +||++||||+||||||++++.
T Consensus 264 ~~~i~~~-------l~~ylk~LGv~~i~L~Pi~e~~~------------------------------------------- 293 (726)
T PRK05402 264 YRELADQ-------LIPYVKEMGFTHVELLPIAEHPF------------------------------------------- 293 (726)
T ss_pred HHHHHHH-------HHHHHHHcCCCEEEECCcccCCC-------------------------------------------
Confidence 9888754 5 889999999999999998752
Q ss_pred hhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCC
Q 002161 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (958)
Q Consensus 439 ~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~ 518 (958)
..+|||++.+||+|+++||| ++|||+||++||++||+||||+|+||++.+
T Consensus 294 -----------------------~~~~GY~~~~y~ai~~~~Gt-------~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 294 -----------------------DGSWGYQPTGYYAPTSRFGT-------PDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred -----------------------CCCCCCCcccCCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 25899999999999999999 569999999999999999999999999765
Q ss_pred CCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC----------
Q 002161 519 GPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI---------- 588 (958)
Q Consensus 519 g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i---------- 588 (958)
+.. ...+|.. +.|++.....|....+.. .++|++|++|+++|++++++|+++|||||||||++.++
T Consensus 344 ~~~--~~~~~~~-~~y~~~~~~~~~~~~w~~-~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g 419 (726)
T PRK05402 344 AHG--LARFDGT-ALYEHADPREGEHPDWGT-LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG 419 (726)
T ss_pred ccc--hhccCCC-cceeccCCcCCccCCCCC-ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccc
Confidence 321 1233432 345443222343333332 26899999999999999999999999999999988655
Q ss_pred --------------cHHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 589 --------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 589 --------------~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
..++|+++++.|+++.| +++++||.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p--------~~~liaE~~~ 460 (726)
T PRK05402 420 EWIPNIYGGRENLEAIDFLRELNAVVHEEFP--------GALTIAEEST 460 (726)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHHHHCC--------CeEEEEECCC
Confidence 25789999999999985 6999999653
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7e-63 Score=592.85 Aligned_cols=310 Identities=24% Similarity=0.324 Sum_probs=245.8
Q ss_pred CCCccEEeCC----eEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCC
Q 002161 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (958)
Q Consensus 208 ~~LGa~~~~~----~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~ 281 (958)
..|||++..+ +++||||||.|++|+|+. |++|.. ..++| +..+|+|++++++...|..|+|+|....
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~----~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~--- 97 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRG----NAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQD--- 97 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCc----ccccccccCCCEEEEEeCCCCCCCEEEEEEECCC---
Confidence 4699999876 899999999999999994 776643 34778 5578999999999999999999996421
Q ss_pred cccceeeecCcceeecccC-CCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccc
Q 002161 282 LQIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (958)
Q Consensus 282 g~~e~~~v~DPYA~~ls~n-g~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty 360 (958)
| +...+.||||+.+... ...|+|+|++.+.|++..|... +++......+++|||+|||+|+..+. ...|+|
T Consensus 98 g--~~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~~~----~~~g~~ 169 (633)
T PRK12313 98 G--YQVEKIDPFAFYFEARPGTASIVWDLPEYKWKDGLWLAR--RKRWNALDRPISIYEVHLGSWKRNED----GRPLSY 169 (633)
T ss_pred C--eEEecCCCceEEEecCCCCceEECCCcccCCCChhhhhc--cccCCCCCCCceEEEEehhccccCCC----CCccCH
Confidence 3 3457899999998763 4578999998888999999764 33322344789999999999997542 346999
Q ss_pred cceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhh
Q 002161 361 LAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVL 440 (958)
Q Consensus 361 ~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l 440 (958)
.+++++ -|+||++||||+||||||++++.
T Consensus 170 ~~~~~~------ll~yl~~LGv~~i~L~Pi~~~~~--------------------------------------------- 198 (633)
T PRK12313 170 RELADE------LIPYVKEMGYTHVEFMPLMEHPL--------------------------------------------- 198 (633)
T ss_pred HHHHHH------HHHHHHHcCCCEEEeCchhcCCC---------------------------------------------
Confidence 988754 14889999999999999998752
Q ss_pred hcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCC
Q 002161 441 EKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP 520 (958)
Q Consensus 441 ~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~ 520 (958)
..+|||++.+||+|+++||| .+|||+||++||++||+||||+|+||++.++.
T Consensus 199 ---------------------~~~~GY~~~~y~~i~~~~Gt-------~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 199 ---------------------DGSWGYQLTGYFAPTSRYGT-------PEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred ---------------------CCCCCCCCcCcCcCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 25899999999999999999 46899999999999999999999999986543
Q ss_pred CCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC------------
Q 002161 521 FDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI------------ 588 (958)
Q Consensus 521 ~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i------------ 588 (958)
. ...+|.. |.|++ .++.........+.++|++|++|+++|++++++|+++|||||||||++.++
T Consensus 251 ~--~~~~~~~-~~~~~-~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~ 326 (633)
T PRK12313 251 G--LAYFDGT-PLYEY-QDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWT 326 (633)
T ss_pred c--ccccCCC-cceee-cCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcC
Confidence 1 1223332 23332 232222222234568899999999999999999999999999999988644
Q ss_pred -----------cHHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 589 -----------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 589 -----------~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
..++|+++++.|+++.| +++++||.|.
T Consensus 327 ~~~~~~~~~~~~~~fl~~~~~~v~~~~p--------~~~liaE~~~ 364 (633)
T PRK12313 327 PNKYGGRENLEAIYFLQKLNEVVYLEHP--------DVLMIAEEST 364 (633)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHCC--------CeEEEEECCC
Confidence 15789999999999885 6899999874
No 14
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.1e-60 Score=565.21 Aligned_cols=306 Identities=23% Similarity=0.319 Sum_probs=234.6
Q ss_pred CCCccEEeCC----eEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCC
Q 002161 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (958)
Q Consensus 208 ~~LGa~~~~~----~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~ 281 (958)
..||||.... +++|+||||.|++|+|+. |+.|.+ ..++| +...|+|++.+++..+|..|+|+|+.. .
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~----~~~pM~~~~~GvW~~~vpg~~~g~~Yky~I~~~---~ 97 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG----FDHPMQRLDFGFWGAFVPGARPGQRYKFRVTGA---A 97 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc----ccccccccCCCEEEEEECCCCCCCEEEEEEECC---C
Confidence 4699998753 799999999999999995 666653 34688 557799999999999999999999752 1
Q ss_pred cccceeeecCcceeecccCCCc-eEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccc
Q 002161 282 LQIEKCYANDPYARGLSSDGRR-TLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (958)
Q Consensus 282 g~~e~~~v~DPYA~~ls~ng~~-s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty 360 (958)
| ....+.||||+.+..++.. |+|.+. ++.|++..|... +.|. ..++++|||+|||+|+.... ...|+|
T Consensus 98 g--~~~~~~DPYa~~~~~~~~~~svv~~~-~~~w~d~~w~~~--~~~~--~~~~~~IYE~Hvg~f~~~~~----g~~~ty 166 (639)
T PRK14706 98 G--QTVDKMDPYGSFFEVRPNTASIIWED-RFEWTDTRWMSS--RTAG--FDQPISIYEVHVGSWARRDD----GWFLNY 166 (639)
T ss_pred C--CEEeccCcceEEEecCCCCceEECCC-CCCCCCcccccc--cCCc--cCCCcEEEEEehhhcccCCC----CCccCH
Confidence 3 2356899999999877654 554444 578888888653 3332 23569999999999986432 124677
Q ss_pred cceeccchhhhhhH-HHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhh
Q 002161 361 LAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439 (958)
Q Consensus 361 ~g~tek~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 439 (958)
.+++++ | +||++||||||+||||++++.
T Consensus 167 ~~~~~~-------l~~ylk~lG~t~velmPv~e~~~-------------------------------------------- 195 (639)
T PRK14706 167 RELAHR-------LGEYVTYMGYTHVELLGVMEHPF-------------------------------------------- 195 (639)
T ss_pred HHHHHH-------HHHHHHHcCCCEEEccchhcCCC--------------------------------------------
Confidence 777653 5 788899999999999998752
Q ss_pred hhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCC
Q 002161 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSG 519 (958)
Q Consensus 440 l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g 519 (958)
..+|||++.+||+|+++||+ .+|||+||++||++||+|||||||||++.++
T Consensus 196 ----------------------~~~wGY~~~~~~~~~~~~g~-------~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 196 ----------------------DGSWGYQVTGYYAPTSRLGT-------PEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred ----------------------CCCCCcCcccccccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 25899999999999999999 5699999999999999999999999997643
Q ss_pred CCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-----------
Q 002161 520 PFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI----------- 588 (958)
Q Consensus 520 ~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i----------- 588 (958)
.. ...+|. .|.|++.....|...++.. ..+|+.+++|+++|++++++|++||||||||||++.++
T Consensus 247 ~~--l~~~dg-~~~y~~~~~~~g~~~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 247 SG--LAHFDG-GPLYEYADPRKGYHYDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hh--hhccCC-CcceeccCCcCCcCCCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccc
Confidence 21 122343 2545443222343222221 23788999999999999999999999999999998876
Q ss_pred -----------cHHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 589 -----------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 589 -----------~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
...+|+++.+.|++.. |+++++||.|.
T Consensus 323 ~~~~gg~~n~~a~~fl~~ln~~v~~~~--------p~~~~iAE~~~ 360 (639)
T PRK14706 323 PNIHGGRENLEAIAFLKRLNEVTHHMA--------PGCMMIAEEST 360 (639)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHhC--------CCeEEEEECCC
Confidence 2357778888888877 46999999985
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-59 Score=560.91 Aligned_cols=307 Identities=21% Similarity=0.330 Sum_probs=243.2
Q ss_pred CCccEEe----CCeEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCc
Q 002161 209 PLGALYA----EETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (958)
Q Consensus 209 ~LGa~~~----~~~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g 282 (958)
.|||+.. .++|+|+||||+|++|+|+. |+.|++ ..++| +..+|||++++++..+|.+|+|+|... .|
T Consensus 126 ~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg----~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~---~G 198 (730)
T PRK12568 126 ALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDV----RRHPMRQRIGGFWELFLPRVEAGARYKYAITAA---DG 198 (730)
T ss_pred hcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCc----cceecccCCCCEEEEEECCCCCCCEEEEEEEcC---CC
Confidence 5999986 35899999999999999995 676654 36788 458999999999999999999999752 23
Q ss_pred ccceeeecCcceeecccCCC-ceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCcccc
Q 002161 283 QIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (958)
Q Consensus 283 ~~e~~~v~DPYA~~ls~ng~-~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~ 361 (958)
+...++||||+.+..++. .|.|.++..+.|++..|... +.|. ...++++|||+|||+|+..+.. ..++|.
T Consensus 199 --~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~~W~~~--r~~~-~~~~~~~IYEvHvgsf~~~~~~----~~~~~~ 269 (730)
T PRK12568 199 --RVLLKADPVARQTELPPATASVVPSAAAFAWTDAAWMAR--RDPA-AVPAPLSIYEVHAASWRRDGHN----QPLDWP 269 (730)
T ss_pred --eEeecCCCcceEeecCCCCCeEEcCCCCCCCCChhhhhc--cccc-CCCCCcEEEEEEhHHhcCCCCC----CCCCHH
Confidence 235689999999987664 56666777788888899764 4443 3678999999999999975432 347899
Q ss_pred ceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhh
Q 002161 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (958)
Q Consensus 362 g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~ 441 (958)
+++++ .|+||++|||||||||||++++.
T Consensus 270 ~la~~------ll~ylk~LGvt~I~LmPi~e~~~---------------------------------------------- 297 (730)
T PRK12568 270 TLAEQ------LIPYVQQLGFTHIELLPITEHPF---------------------------------------------- 297 (730)
T ss_pred HHHHH------HHHHHHHcCCCEEEECccccCCC----------------------------------------------
Confidence 88763 46888999999999999998752
Q ss_pred cCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCC
Q 002161 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (958)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~ 521 (958)
..+|||+|.+||+|+++||+ ++|||+||++||++||+||||+|+||++.++.
T Consensus 298 --------------------~~~wGY~~~~~~a~~~~~G~-------~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~- 349 (730)
T PRK12568 298 --------------------GGSWGYQPLGLYAPTARHGS-------PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH- 349 (730)
T ss_pred --------------------CCCCCCCCCcCCccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCCcccc-
Confidence 26899999999999999999 56999999999999999999999999986532
Q ss_pred CCCCccCCCCCcceEecCC-CCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc-----------
Q 002161 522 DDNSVLDKVVPGYYLRRNS-DGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM----------- 589 (958)
Q Consensus 522 ~~~svldk~vP~YY~r~~~-~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~----------- 589 (958)
....+|.. .+|...++ .|....+.++ .+|+.+++|+++|++++++|+++|||||||||++.++.
T Consensus 350 -~l~~fdg~--~~Ye~~d~~~g~~~~W~~~-~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 350 -GLAQFDGA--ALYEHADPREGMHRDWNTL-IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred -ccccCCCc--cccccCCCcCCccCCCCCe-ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc
Confidence 11234432 23432222 2433333322 57999999999999999999999999999999876542
Q ss_pred -------------HHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 590 -------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 590 -------------~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
.++|+++++.|++..| +++++||-+.
T Consensus 426 ~pn~~gg~en~ea~~Fl~~ln~~v~~~~P--------~~~~IAEest 464 (730)
T PRK12568 426 VPNAHGGRENLEAVAFLRQLNREIASQFP--------GVLTIAEEST 464 (730)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCC--------CeEEEEEcCC
Confidence 3578888889988874 6999999753
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.5e-58 Score=573.94 Aligned_cols=303 Identities=23% Similarity=0.335 Sum_probs=239.1
Q ss_pred CCccEEeC--------CeEEEEEEcCCCCeEEEE-EecCCCCCCCceEEeec--cCCCEEEEEeCCCCCCcEEEEEEEEe
Q 002161 209 PLGALYAE--------ETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVY 277 (958)
Q Consensus 209 ~LGa~~~~--------~~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvWsv~~~~~~~G~~Y~y~v~~~ 277 (958)
.||||... ++|+|+||||+|++|+|+ .||.|++ ..++|+ ..+|+|++++|+...|.+|+|+|...
T Consensus 622 ~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~----~~~~m~~~~~~GvW~~fipg~~~G~~Yky~i~~~ 697 (1224)
T PRK14705 622 VLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDG----REHSMRSLGSSGVWELFIPGVVAGACYKFEILTK 697 (1224)
T ss_pred hcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCC----CcccceECCCCCEEEEEECCCCCCCEEEEEEEcC
Confidence 59999842 489999999999999999 5988865 345783 57899999999999999999999852
Q ss_pred cCCCcccceeeecCcceeecccCC-CceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCC
Q 002161 278 HPSALQIEKCYANDPYARGLSSDG-RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDF 356 (958)
Q Consensus 278 ~p~~g~~e~~~v~DPYA~~ls~ng-~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~ 356 (958)
.| +...+.||||+....+. ..|+|+|+ ++.|++.+|... +.+.....++++|||+|||+|+.
T Consensus 698 ---~g--~~~~k~DPyA~~~e~~p~~aS~V~d~-~~~w~d~~W~~~--r~~~~~~~~p~~IYEvHvgsf~~--------- 760 (1224)
T PRK14705 698 ---AG--QWVEKADPLAFGTEVPPLTASRVVEA-SYAFKDAEWMSA--RAERDPHNSPMSVYEVHLGSWRL--------- 760 (1224)
T ss_pred ---CC--cEEecCCccccccccCCCCCeEEeCC-CCCcCChhhhhc--cccCCCCcCCcEEEEEEeccccc---------
Confidence 23 34578999999988765 46899998 488999999764 33322234789999999999976
Q ss_pred CccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccch
Q 002161 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (958)
Q Consensus 357 rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 436 (958)
.|+|.+++++ .|+|||+|||||||||||++++.
T Consensus 761 ~~~~~~l~~~------lldYlk~LGvt~IeLmPv~e~p~----------------------------------------- 793 (1224)
T PRK14705 761 GLGYRELAKE------LVDYVKWLGFTHVEFMPVAEHPF----------------------------------------- 793 (1224)
T ss_pred CCchHHHHHH------HHHHHHHhCCCEEEECccccCCC-----------------------------------------
Confidence 2789888753 36888889999999999998752
Q ss_pred hhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeecccc
Q 002161 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (958)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~ 516 (958)
.++|||++.+||+|+++||| .+|||+||++||++||+|||||||||++
T Consensus 794 -------------------------~~swGY~~~~y~ap~~ryGt-------~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 794 -------------------------GGSWGYQVTSYFAPTSRFGH-------PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred -------------------------CCCCCCCccccCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 26999999999999999998 5699999999999999999999999997
Q ss_pred CCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC--------
Q 002161 517 GSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------- 588 (958)
Q Consensus 517 ~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i-------- 588 (958)
..+. . ...+|.. |-|+|.....|....++ ...+|+++++|+++|++++++|+++|||||||||++.+|
T Consensus 842 ~d~~-~-l~~fdg~-~~y~~~d~~~g~~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~ 917 (1224)
T PRK14705 842 KDSW-A-LAQFDGQ-PLYEHADPALGEHPDWG-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSRE 917 (1224)
T ss_pred cchh-h-hhhcCCC-cccccCCcccCCCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccc
Confidence 5421 1 1223332 33444322234332222 234789999999999999999999999999999998776
Q ss_pred ----------------cHHHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 589 ----------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 589 ----------------~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
..++|+++.+.|++.. |++++|+|.+.
T Consensus 918 ~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~--------p~~~~IAEest 960 (1224)
T PRK14705 918 EGQWRPNRFGGRENLEAISFLQEVNATVYKTH--------PGAVMIAEEST 960 (1224)
T ss_pred cccccccccCCccChHHHHHHHHHHHHHHHHC--------CCeEEEEEcCC
Confidence 2457777777777765 56999999775
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.2e-55 Score=525.47 Aligned_cols=304 Identities=19% Similarity=0.240 Sum_probs=236.9
Q ss_pred CCCccEEeCCeEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-ccCCCEEEEEeCC------CCCCcEEEEEEEEecC
Q 002161 208 GPLGALYAEETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYVYEVSVYHP 279 (958)
Q Consensus 208 ~~LGa~~~~~~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~~~~------~~~G~~Y~y~v~~~~p 279 (958)
..||+++..++++||||||+|++|+|+. |+.|++ ..++| +...|+|++++|+ ..+|.+|+|+|+...
T Consensus 105 ~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~W~~----~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~- 179 (758)
T PLN02447 105 EKFGFNRSEGGITYREWAPGAKAAALIGDFNNWNP----NAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPD- 179 (758)
T ss_pred HhceeEEecCCEEEEEECCCCCEEEEEEecCCCCC----CccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCC-
Confidence 4699999999999999999999999994 787764 34688 5678999999998 788999999998532
Q ss_pred CCcccceeeecCcceeecccC-CC-----ceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCC
Q 002161 280 SALQIEKCYANDPYARGLSSD-GR-----RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVH 353 (958)
Q Consensus 280 ~~g~~e~~~v~DPYA~~ls~n-g~-----~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~ 353 (958)
| +...+.||||+....+ +. .|+++|+.. ..+..|... +|. .+.+++|||+||+.|+. +
T Consensus 180 --g--~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~--~~~y~w~~~---~~~--~~~~~~IYE~Hvg~~~~-~---- 243 (758)
T PLN02447 180 --G--RWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE--EEKYVFKHP---RPP--RPAALRIYEAHVGMSSE-E---- 243 (758)
T ss_pred --C--cEEeecCchHheeeccCCccCCCCceEEeCCCC--CCCCCCCCC---CCC--CCCCCEEEEEeCCcccC-C----
Confidence 2 3467899999876654 32 578888753 345678653 342 45789999999998863 2
Q ss_pred CCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccc
Q 002161 354 PDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKS 433 (958)
Q Consensus 354 ~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 433 (958)
...|+|.+|++ +.|+||++||+||||||||++++.
T Consensus 244 -~~~gty~~~~~------~~L~ylk~LG~t~I~LmPi~e~~~-------------------------------------- 278 (758)
T PLN02447 244 -PKVNSYREFAD------DVLPRIKALGYNAVQLMAIQEHAY-------------------------------------- 278 (758)
T ss_pred -CCCCCHHHHHH------HHHHHHHHcCCCEEEECCccccCC--------------------------------------
Confidence 23599999875 358888999999999999998863
Q ss_pred cchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeec
Q 002161 434 FADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 434 ~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
..+|||++.+||+|+++||+ .+|||+||++||++||+||||||+|
T Consensus 279 ----------------------------~~~wGY~~~~~fa~~~~~Gt-------p~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 279 ----------------------------YGSFGYHVTNFFAVSSRSGT-------PEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred ----------------------------CCCCCcCcccCcccccccCC-------HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 25899999999999999998 3599999999999999999999999
Q ss_pred cccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH---
Q 002161 514 HLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK--- 590 (958)
Q Consensus 514 Ht~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~--- 590 (958)
|++...... ...+|...+.||+.. ..|.. +.+....+|+++++|+++|++++++|+++|||||||||++.+|-.
T Consensus 324 H~~~~~~~g-l~~fDg~~~~Yf~~~-~~g~~-~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~h 400 (758)
T PLN02447 324 HASKNTLDG-LNGFDGTDGSYFHSG-PRGYH-WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHH 400 (758)
T ss_pred ccccccccc-ccccCCCCccccccC-CCCCc-CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhcccc
Confidence 998643211 234565555677643 33422 212223478999999999999999999999999999999987731
Q ss_pred -----------------------HHHHHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 591 -----------------------STMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 591 -----------------------~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
.+++.+.+.|+++. |++++|||-+.
T Consensus 401 g~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~--------p~~~~IAEd~s 448 (758)
T PLN02447 401 GLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLY--------PEAVTIAEDVS 448 (758)
T ss_pred CcccccccCcccccCCccChHHHHHHHHHHHHHHHhC--------CCeEEEEEcCC
Confidence 14566666677665 56999999764
No 18
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3.1e-52 Score=497.29 Aligned_cols=467 Identities=16% Similarity=0.197 Sum_probs=303.4
Q ss_pred EeCCeEEEEEEcCC---CCeEEEEEecCCCCCCCceEEeec-----cCCCEEEEEeCCC--CCCcEEEEEEEEecCCCcc
Q 002161 214 YAEETVSLYLWAPT---AQSVSACIYRDPLGGNPLEVVQLK-----ENDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQ 283 (958)
Q Consensus 214 ~~~~~v~F~lWAPt---A~~V~L~ly~~~~~~~~~~~~~M~-----~~~GvWsv~~~~~--~~G~~Y~y~v~~~~p~~g~ 283 (958)
+.++.+++||+.+. .++|.|.+..+.. ...++|. .....|+++++.. .....|+|+|... +
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~----~- 86 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE----EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH----D- 86 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC----EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC----C-
Confidence 46789999999874 4577776433221 2467772 1235699998753 4456799998531 1
Q ss_pred cceeeecCcceeecccCCCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCC---------
Q 002161 284 IEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHP--------- 354 (958)
Q Consensus 284 ~e~~~v~DPYA~~ls~ng~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~--------- 354 (958)
+... +...|.... ... + .....+... ...| ....+.|||++.+++|..++++...
T Consensus 87 -~~~~--------~~~~g~~~~-~~~-~--~~~f~~~~~-~~~P--~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~ 150 (598)
T PRK10785 87 -RQRW--------FTPQGFSRR-PPA-R--LEQFAVDVP-DQGP--QWVADQVFYQIFPDRFARSLPREAVQDHVYYHHA 150 (598)
T ss_pred -EEEE--------EcCCceeec-cCC-C--ccceEeeCC-CCCC--chhhcCEEEEechhhhcCCCcccCccCCceeecc
Confidence 1111 111111000 000 0 000111000 0222 1238899999999999887763211
Q ss_pred ----------------------CCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCc
Q 002161 355 ----------------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (958)
Q Consensus 355 ----------------------~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~ 412 (958)
-+.|++.|+++ +|+||++||||+|||+|||+.+
T Consensus 151 ~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~-------kLdYL~~LGv~~I~L~Pif~s~------------------ 205 (598)
T PRK10785 151 AGQEIILRDWDEPVTAQAGGSTFYGGDLDGISE-------KLPYLKKLGVTALYLNPIFTAP------------------ 205 (598)
T ss_pred CCCcccccCcCCCcccccccccccCcCHHHHHH-------HHHHHHHcCCCEEEeCCcccCC------------------
Confidence 12577777764 5999999999999999999764
Q ss_pred ccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHH
Q 002161 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (958)
Q Consensus 413 ~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Ef 492 (958)
.|||||+.+|++++++|||. ++|
T Consensus 206 --------------------------------------------------s~hgYd~~Dy~~iDp~~Gt~-------~df 228 (598)
T PRK10785 206 --------------------------------------------------SVHKYDTEDYRHVDPQLGGD-------AAL 228 (598)
T ss_pred --------------------------------------------------CCCCcCcccccccCcccCCH-------HHH
Confidence 38999999999999999994 589
Q ss_pred HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCcc-------CCCCC--cceEecCCCCccccCC---CcCCCCCCCHHH
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-------DKVVP--GYYLRRNSDGFIEHST---CMNNTASEHYMV 560 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svl-------dk~vP--~YY~r~~~~G~~~~st---c~~d~a~e~~mv 560 (958)
|+||++||++||+||||+|+|||+..++|+....- +.-.| +||+..+ .|.+..+. ..+++|++||+|
T Consensus 229 ~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~-~~~~~~w~g~~~lPdLN~~np~v 307 (598)
T PRK10785 229 LRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSD-DGRALDWLGYASLPKLDFQSEEV 307 (598)
T ss_pred HHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECC-CCCcCCcCCCCcCccccCCCHHH
Confidence 99999999999999999999999988776532110 11112 4555433 34443333 357899999999
Q ss_pred HHHHHH----HHHHHHHh-CCccEEEEecCCCCc--------HHHHHHHHHHHHhhcccccCcCCCCceEeCcccccccc
Q 002161 561 ERLIID----DLLCWAVN-YKVDGFRFDLMGHIM--------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (958)
Q Consensus 561 ~k~iiD----sl~~W~~e-y~IDGFRfDl~~~i~--------~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev 627 (958)
+++|++ .+++|+++ |||||||+|++.+++ .++|+++++++++++| +++++||.|.....
T Consensus 308 ~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p--------d~~ligE~~~~~~~ 379 (598)
T PRK10785 308 VNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP--------EAYVLGEHFGDARQ 379 (598)
T ss_pred HHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC--------CeEEEEeccCChhh
Confidence 999995 79999997 999999999998884 5799999999999884 68999999964321
Q ss_pred cccccCcccccccCCCCceeecc-----hHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHH
Q 002161 628 AKNGRGVNASQFNLSGTGIGSFN-----DRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (958)
Q Consensus 628 ~~~~~~~~a~q~~l~gt~ig~fn-----DrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~ 702 (958)
. .++.+ .-+.+| ..+|+.+.+.. + .|..+ ..+...+...|....
T Consensus 380 ~-----l~~~~------~d~~mny~~f~~~~~~~~~~~~-~------~~~~~---------~~~~~~~~~~l~~~~---- 428 (598)
T PRK10785 380 W-----LQADV------EDAAMNYRGFAFPLRAFLANTD-I------AYHPQ---------QIDAQTCAAWMDEYR---- 428 (598)
T ss_pred h-----ccCcc------ccccccchhhhhHHHHHhhccc-c------ccCcc---------CCCHHHHHHHHHHHH----
Confidence 1 01111 112333 33444333210 0 01000 012222222221110
Q ss_pred hhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHhc---------------CCCeee
Q 002161 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS---------------LKGIPF 767 (958)
Q Consensus 703 ~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~---------------~~GiPf 767 (958)
. .|.. ..-...+||++|||+.|+...+. +.|||+
T Consensus 429 -------~------------------~~~~------~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~ 477 (598)
T PRK10785 429 -------A------------------GLPH------QQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPC 477 (598)
T ss_pred -------H------------------hCCH------HHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcE
Confidence 0 1100 00113479999999998876543 239999
Q ss_pred EecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHH
Q 002161 768 FHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVL 847 (958)
Q Consensus 768 iy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li 847 (958)
||||||+|+++..+ +++ +..|+|+... |+ .+++++||+||
T Consensus 478 IYYGdE~G~~g~~d--p~~----R~~m~W~~~~----------------~~------------------~~l~~~~r~Li 517 (598)
T PRK10785 478 IYYGDEVGLDGGND--PFC----RKPFPWDEAK----------------QD------------------GALLALYQRMI 517 (598)
T ss_pred EEeeeeccccCCCC--CCc----cCCcCCCccc----------------Cc------------------hHHHHHHHHHH
Confidence 99999999986533 333 3456675321 11 36999999999
Q ss_pred HHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCC
Q 002161 848 RIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 848 ~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~ 923 (958)
+|||++|+|+.|+.+.+. . .+++++|.|..+. +.++|++|.+ +.+++.||.
T Consensus 518 ~lRk~~~aL~~G~~~~l~-------~----~~~v~af~R~~~~-------------~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 518 ALRKKSQALRRGGCQVLY-------A----EGNVVVFARVLQQ-------------QRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred HHHhhCcccccCcEEEEE-------e----CCCEEEEEEECCC-------------CEEEEEEECC-CCeEEeccc
Confidence 999999999999864332 1 1469999998653 6899999999 778888874
No 19
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=473.58 Aligned_cols=310 Identities=26% Similarity=0.418 Sum_probs=230.6
Q ss_pred CCccEEeC---CeEEEEEEcCCCCeEEEE-EecCCCCCCCceEEee--ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCc
Q 002161 209 PLGALYAE---ETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL--KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (958)
Q Consensus 209 ~LGa~~~~---~~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M--~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g 282 (958)
.+||++.. .+|+|+||||+|++|+|+ .|++|++ ..++| +.+.|+|++++++...|..|+|+|...+ |
T Consensus 25 ~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~----~~~~~~~~~~~G~we~~vp~~~~G~~Yky~l~~~~---g 97 (628)
T COG0296 25 KLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDG----RRMPMRDRKESGIWELFVPGAPPGTRYKYELIDPS---G 97 (628)
T ss_pred hhCcccccCCCCceEEEEECCCCCeEEEEeecCCccc----eecccccCCCCceEEEeccCCCCCCeEEEEEeCCC---C
Confidence 68998864 369999999999999999 5888775 56777 4578999999999999999999997532 3
Q ss_pred ccceeeecCcceeecccC-CCceEEeeCCCCCCCCccccccccCCCCCCCCCCceEEEEEccccccCCCCCCCCCCcccc
Q 002161 283 QIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (958)
Q Consensus 283 ~~e~~~v~DPYA~~ls~n-g~~s~vvDl~~~~~~P~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~ 361 (958)
....++||||+..... ...|+|+|+.++.|+++.| .. ......+++++|||+||..|+. + ...|+|.
T Consensus 98 --~~~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~~~-~~---~~~~~~~e~~vIYElHvGs~~~-~-----~~~~~~e 165 (628)
T COG0296 98 --QLRLKADPYARRQEVGPHTASQVVDLPDYEWQDERW-DR---AWRGRFWEPIVIYELHVGSFTP-D-----RFLGYFE 165 (628)
T ss_pred --ceeeccCchhhccCCCCCCcceecCCCCcccccccc-cc---cccCCCCCCceEEEEEeeeccC-C-----CCcCHHH
Confidence 2468999999987653 3579999997789999988 32 2222357899999999999987 1 2346665
Q ss_pred ceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhh
Q 002161 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (958)
Q Consensus 362 g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~ 441 (958)
+. +++|+||++||||||+||||.+++-
T Consensus 166 ~a-------~~llpYl~elG~T~IELMPv~e~p~---------------------------------------------- 192 (628)
T COG0296 166 LA-------IELLPYLKELGITHIELMPVAEHPG---------------------------------------------- 192 (628)
T ss_pred HH-------HHHhHHHHHhCCCEEEEcccccCCC----------------------------------------------
Confidence 54 4569999999999999999999874
Q ss_pred cCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCC
Q 002161 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (958)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~ 521 (958)
..+|||+++.||||..+||| | ++||+||++||++||.|||||||||+..++.
T Consensus 193 --------------------~~sWGYq~~g~yAp~sryGt-P------edfk~fVD~aH~~GIgViLD~V~~HF~~d~~- 244 (628)
T COG0296 193 --------------------DRSWGYQGTGYYAPTSRYGT-P------EDFKALVDAAHQAGIGVILDWVPNHFPPDGN- 244 (628)
T ss_pred --------------------CCCCCCCcceeccccccCCC-H------HHHHHHHHHHHHcCCEEEEEecCCcCCCCcc-
Confidence 36999999999999999999 4 4899999999999999999999999976543
Q ss_pred CCCCccCCCCCcceEec-CCC-CccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHH-------
Q 002161 522 DDNSVLDKVVPGYYLRR-NSD-GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST------- 592 (958)
Q Consensus 522 ~~~svldk~vP~YY~r~-~~~-G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~------- 592 (958)
.|-.+.|.+++.+ ++. |. .+.+.....+..+++||+||++++++|+++|||||||+|++..|....
T Consensus 245 ----~L~~fdg~~~~e~~~~~~~~-~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~ 319 (628)
T COG0296 245 ----YLARFDGTFLYEHEDPRRGE-HTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGE 319 (628)
T ss_pred ----hhhhcCCccccccCCccccc-CCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhc
Confidence 2333333332221 221 21 111111112334899999999999999999999999999997764331
Q ss_pred ----------HHHHHHHHHhhcccccCcCCCCceEeCccccc
Q 002161 593 ----------MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (958)
Q Consensus 593 ----------~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~ 624 (958)
...+.+.++..+.-. ....+.++.|+|-|+.
T Consensus 320 ~~~n~~ggr~n~~a~efl~~~n~~i-~~~~pg~~~iaeestd 360 (628)
T COG0296 320 WVPNEYGGRENLEAAEFLRNLNSLI-HEEEPGAMTIAEESTD 360 (628)
T ss_pred ccccccCCcccHHHHHHhhhhhhhh-cccCCCceeeeeeccC
Confidence 122333343333211 1123567889998863
No 20
>PLN02960 alpha-amylase
Probab=100.00 E-value=8.4e-49 Score=468.54 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=203.1
Q ss_pred EEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcceeec--ccCCCceEEeeCCCCCCCCccccccc
Q 002161 247 VVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL--SSDGRRTLLVNLDSDTLKPEGWDKLV 323 (958)
Q Consensus 247 ~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~l--s~ng~~s~vvDl~~~~~~P~~W~~~~ 323 (958)
-+.| +...|.|+..+++..+|.+|+|+|+... + ...+.||||+.+ ..++.++.+|+++.....+..|...
T Consensus 316 ~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~---g---~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~- 388 (897)
T PLN02960 316 WEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPD---G---PLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFE- 388 (897)
T ss_pred eeeeeecCCcEEEEEccCCCCCCEEEEEEEeCC---C---ceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCC-
Confidence 4567 6788999999999999999999997521 2 245789999988 4455545556654322345788653
Q ss_pred cCCCCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccc
Q 002161 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (958)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~ 403 (958)
+|. .+++++|||+||++|+.. ...|||.+++++ .|+||++|||||||||||+++..
T Consensus 389 --~p~--~~~~~vIYElHvg~~~~e------~~~gtf~~~~e~------~LdYLk~LGvt~IeLmPv~e~~~-------- 444 (897)
T PLN02960 389 --RPK--VPKSLRIYECHVGISGSE------PKISSFKEFTQK------VLPHVKKAGYNAIQLIGVQEHKD-------- 444 (897)
T ss_pred --CCC--CCCCcEEEEEecccccCC------CCCCCHHHHHHH------HHHHHHHcCCCEEEECCcccCCC--------
Confidence 343 468899999999988642 235999999863 48888889999999999998752
Q ss_pred cccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCC
Q 002161 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (958)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~ 483 (958)
..+|||++.+||+|+++|||
T Consensus 445 ----------------------------------------------------------~~swGY~~~~yfa~~~~yGt-- 464 (897)
T PLN02960 445 ----------------------------------------------------------YSSVGYKVTNFFAVSSRFGT-- 464 (897)
T ss_pred ----------------------------------------------------------CCCCCCCcccCCCcccccCC--
Confidence 25899999999999999999
Q ss_pred CCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHH
Q 002161 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (958)
Q Consensus 484 ~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (958)
.+|||+||++||++||+|||||||||++.+..+. ...+|.....||+. +..|....+ .+..+|+.+++|+++
T Consensus 465 -----p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~~~~Yf~~-~~~g~~~~W-G~~~fNy~~~eVr~f 536 (897)
T PLN02960 465 -----PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFHS-GKRGHHKRW-GTRMFKYGDHEVLHF 536 (897)
T ss_pred -----HHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCCccceeec-CCCCccCCC-CCcccCCCCHHHHHH
Confidence 4699999999999999999999999998764322 23455543346653 333433223 345679999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCCCc-------------------------HHHHHHHHHHHHhhcccccCcCCCCceEe
Q 002161 564 IIDDLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (958)
Q Consensus 564 iiDsl~~W~~ey~IDGFRfDl~~~i~-------------------------~~~~~~~~~al~~i~~~~~~~~~~~~~l~ 618 (958)
|++++++|++||||||||||++..|. ..+++.+.+.|++.. |++++|
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~--------P~vilI 608 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLH--------PNIITI 608 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhC--------CCeEEE
Confidence 99999999999999999999886632 123444555555444 679999
Q ss_pred Ccccc
Q 002161 619 GEGWD 623 (958)
Q Consensus 619 GEgWd 623 (958)
+|-+.
T Consensus 609 AEdss 613 (897)
T PLN02960 609 AEDAT 613 (897)
T ss_pred EECCC
Confidence 99653
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.3e-48 Score=461.97 Aligned_cols=401 Identities=19% Similarity=0.251 Sum_probs=265.1
Q ss_pred CCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCC
Q 002161 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (958)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~ 411 (958)
+++.||||++||+|+.++.. ..|+|.|++++ |+||++||||+|||+|||+..+
T Consensus 3 ~~~~viYqi~~~~f~d~~~~----~~Gdl~gi~~~-------Ldyl~~LGv~~i~L~Pi~~~~~---------------- 55 (539)
T TIGR02456 3 YKDAVFYEVHVRSFFDSNGD----GIGDFPGLTSK-------LDYLKWLGVDALWLLPFFQSPL---------------- 55 (539)
T ss_pred cccceEEEEehhHhhcCCCC----CccCHHHHHHh-------HHHHHHCCCCEEEECCCcCCCC----------------
Confidence 57899999999999976644 26999999764 9999999999999999997542
Q ss_pred cccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHH
Q 002161 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (958)
Q Consensus 412 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~E 491 (958)
.+|||++.+|++++++||+ .++
T Consensus 56 ---------------------------------------------------~~~gY~~~dy~~vd~~~Gt-------~~d 77 (539)
T TIGR02456 56 ---------------------------------------------------RDDGYDVSDYRAILPEFGT-------IDD 77 (539)
T ss_pred ---------------------------------------------------CCCCCCcccccccChhhCC-------HHH
Confidence 4799999999999999999 468
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCcc--CCCCCcceEecCCCCccc------------c-----------
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPGYYLRRNSDGFIE------------H----------- 546 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svl--dk~vP~YY~r~~~~G~~~------------~----------- 546 (958)
||+||++||++||+||||+|+|||+..++|...+.- +...++||++.+....+. +
T Consensus 78 f~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 157 (539)
T TIGR02456 78 FKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYY 157 (539)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeE
Confidence 999999999999999999999999988876532211 222346776533211110 0
Q ss_pred ----CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-------------cHHHHHHHHHHHHhhcccccC
Q 002161 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------------MKSTMMKAKHALHSLTKEIHG 609 (958)
Q Consensus 547 ----stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i-------------~~~~~~~~~~al~~i~~~~~~ 609 (958)
..+.+++|++||+|+++|++++++|++ +||||||||++.++ ..++|+++++.+++..|
T Consensus 158 ~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p---- 232 (539)
T TIGR02456 158 WHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYP---- 232 (539)
T ss_pred EecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCC----
Confidence 124578999999999999999999996 89999999999887 35789999999998874
Q ss_pred cCCCCceEeCcccccccccccccCcccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHH
Q 002161 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAV 689 (958)
Q Consensus 610 ~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~ 689 (958)
+++++||.|...+.. .... +.+.. ..--..||..++..+... +. .++...
T Consensus 233 ----~~~~iaE~~~~~~~~--~~y~-~~~~~--~~~d~~f~f~l~~~~~~~----------l~-----------~~~~~~ 282 (539)
T TIGR02456 233 ----GRMLLAEANQWPEEV--VAYF-GDEGD--PECHMAFNFPVMPRIFMA----------LR-----------REDRSP 282 (539)
T ss_pred ----CeEEEEEeCCCHHHH--HHhh-CCCCC--CeeeeEEChhhhhhhhcc----------cc-----------cCCHHH
Confidence 689999986432210 0000 00000 011135676665444321 00 111111
Q ss_pred HHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccc--------------
Q 002161 690 EEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNET-------------- 755 (958)
Q Consensus 690 ~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~t-------------- 755 (958)
+...+... . .+ ..+....+|++|||..+
T Consensus 283 l~~~l~~~------------~------------------~~--------~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~ 324 (539)
T TIGR02456 283 IIDILKET------------P------------------DI--------PDSCQWCIFLRNHDELTLEMVTDEERDFMYA 324 (539)
T ss_pred HHHHHHHh------------h------------------hc--------cCCCceeeecCCCCccCccccChhhhhhhhh
Confidence 11111100 0 00 11223467888888732
Q ss_pred -----------------hHHH---------------hcCCCeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCC-C
Q 002161 756 -----------------LFDV---------------VSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSN-N 802 (958)
Q Consensus 756 -----------------L~D~---------------l~~~GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n-~ 802 (958)
+... +.+.|+|+||||+|+|+++...-. ...+-+.+|.|+...| +
T Consensus 325 ~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~--~~~~~R~pm~W~~~~~~g 402 (539)
T TIGR02456 325 AYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLG--DRNGVRTPMQWSPDRNAG 402 (539)
T ss_pred hccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccC--CCcCccCCcCcCCCCCCC
Confidence 2111 234499999999999997532100 0011234688976443 4
Q ss_pred CCCCCCCCCcCCCCccccccCCCC-------CCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCC
Q 002161 803 WGVGLPPKEKNEKNWPLIRPRLAD-------PSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGP 875 (958)
Q Consensus 803 w~~GlP~~~~n~~~W~~i~~~l~~-------~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~ 875 (958)
|..+-| |....|...+ .+++.+.++..+++++||+||+||+++|+|+.|++..+. .+
T Consensus 403 fs~~~~--------~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~-------~~- 466 (539)
T TIGR02456 403 FSSADP--------GQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLP-------TG- 466 (539)
T ss_pred CCCCCC--------cccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEe-------cC-
Confidence 544432 1111111111 122222233357999999999999999999999854321 11
Q ss_pred CCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCC
Q 002161 876 SAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 876 ~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~ 923 (958)
.++|++|.|..+. +.++||+|.+.++++++|+.
T Consensus 467 --~~~v~~f~R~~~~-------------~~vlVv~N~s~~~~~v~l~~ 499 (539)
T TIGR02456 467 --NRRVLAFLREYEG-------------ERVLCVFNFSRNPQAVELDL 499 (539)
T ss_pred --CCCEEEEEEEcCC-------------cEEEEEEeCCCCCEEeeccc
Confidence 1359999998653 68999999999999998864
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2e-48 Score=460.20 Aligned_cols=408 Identities=15% Similarity=0.203 Sum_probs=272.1
Q ss_pred CCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCC
Q 002161 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (958)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~ 411 (958)
+++.||||+|+|.|+.++.+. .|+|.|++++ |+||++||||+|||+|||+..+
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~~~----~G~~~gi~~~-------l~yl~~lG~~~i~l~Pi~~~~~---------------- 54 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTGDG----TGDLRGIIEK-------LDYLKKLGVDYIWLNPFYVSPQ---------------- 54 (543)
T ss_pred cccCEEEEEEhHHHhcCCCCC----ccCHHHHHHh-------HHHHHHcCCCEEEECCcccCCC----------------
Confidence 578999999999998755432 5999998765 8899999999999999997642
Q ss_pred cccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHH
Q 002161 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (958)
Q Consensus 412 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~E 491 (958)
..+||++.+|+.++++||| .++
T Consensus 55 ---------------------------------------------------~~~gY~~~d~~~id~~~Gt-------~~~ 76 (543)
T TIGR02403 55 ---------------------------------------------------KDNGYDVSDYYAINPLFGT-------MAD 76 (543)
T ss_pred ---------------------------------------------------CCCCCCccccCccCcccCC-------HHH
Confidence 3579999999999999999 468
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCcc-CCCCCcceEecCCCCccc-------------c-----------
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVVPGYYLRRNSDGFIE-------------H----------- 546 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svl-dk~vP~YY~r~~~~G~~~-------------~----------- 546 (958)
||+||++||++||+||||+|+|||+..++|...+.- +..-..||.+.+..|... .
T Consensus 77 ~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 156 (543)
T TIGR02403 77 FEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHL 156 (543)
T ss_pred HHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEec
Confidence 999999999999999999999999988877532211 111125555443222100 0
Q ss_pred -CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH-----------------------HHHHHHHHHHHh
Q 002161 547 -STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------------------STMMKAKHALHS 602 (958)
Q Consensus 547 -stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~-----------------------~~~~~~~~al~~ 602 (958)
..+.+++|++||.|+++|++.+++|++ +||||||||+++|+++ ++|+++++.+++
T Consensus 157 f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 157 FDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred cCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 013578999999999999999999996 7999999999999964 366777766665
Q ss_pred hcccccCcCCCCceEeCcccccccccccccCc--ccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCC
Q 002161 603 LTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGV--NASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPN 680 (958)
Q Consensus 603 i~~~~~~~~~~~~~l~GEgWd~gev~~~~~~~--~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n 680 (958)
. ++++++||.|.... .....+. ...++. +.||.. ..+.. +..+....
T Consensus 236 -~--------~~~~lvgE~~~~~~-~~~~~y~~~~~~~~d------~~~nf~--~~~~~-----------~~~~~~~~-- 284 (543)
T TIGR02403 236 -D--------NDSVTVGEMSSTTI-ENCIRYSNPENKELS------MVFTFH--HLKVD-----------YPNGEKWT-- 284 (543)
T ss_pred -c--------CCeEEEEEeCCCCH-HHHHhhhCCCCCeeC------eEEChh--hhhch-----------hccccccc--
Confidence 4 46999999996321 1000110 000111 235432 11111 10000000
Q ss_pred CCCCCChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHh
Q 002161 681 GHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV 760 (958)
Q Consensus 681 ~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l 760 (958)
....+...+...+.... . .+.....-..+|++|||+.|+...+
T Consensus 285 -~~~~~~~~l~~~~~~~~-----------~-------------------------~~~~~~~~~~~fl~NHD~~R~~s~~ 327 (543)
T TIGR02403 285 -LAKFDFAKLKEIFSTWQ-----------T-------------------------GMQAGGGWNALFWNNHDQPRAVSRF 327 (543)
T ss_pred -cCCCCHHHHHHHHHHHH-----------H-------------------------hccccCcceeeecCCCChhhHHHhc
Confidence 00001111111110000 0 0001122346899999998866433
Q ss_pred c-------------------CCCeeeEecCccccccCCCCC-----------CCC--------------------CCCCC
Q 002161 761 S-------------------LKGIPFFHCGDEILRSKSLDR-----------DSY--------------------NSGDW 790 (958)
Q Consensus 761 ~-------------------~~GiPfiy~GdEigrSks~d~-----------nsY--------------------~sgD~ 790 (958)
. +.|+||||||+|+||+..... +-| .+.+.
T Consensus 328 g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~ 407 (543)
T TIGR02403 328 GDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNS 407 (543)
T ss_pred CCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCC
Confidence 2 239999999999999863110 000 11234
Q ss_pred cccccCCCCCC-CCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeE
Q 002161 791 LNRIDFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERIC 869 (958)
Q Consensus 791 ~N~~dw~~~~n-~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~ 869 (958)
+.+|.|+...| +|..+- .|..+.+.....+++.+.++..+++++||+||+|||++|+|+.|+++.+
T Consensus 408 RtPm~W~~~~~aGFs~~~--------pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~----- 474 (543)
T TIGR02403 408 RTPMQWNNEKNAGFTTGK--------PWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL----- 474 (543)
T ss_pred ccccccCCCCCCCCCCCC--------CCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe-----
Confidence 67899986655 565433 3655555445555666666667899999999999999999999986432
Q ss_pred EecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCCC
Q 002161 870 FHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPAL 924 (958)
Q Consensus 870 f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~l 924 (958)
... .++|++|.|..+. +.++||+|.++++++++||..
T Consensus 475 --~~~---~~~v~a~~R~~~~-------------~~~lVv~N~s~~~~~~~l~~~ 511 (543)
T TIGR02403 475 --LPD---DPSVWAYTRTYKN-------------QKLLVINNFYGEEKTIELPLD 511 (543)
T ss_pred --ecC---CCcEEEEEEEcCC-------------cEEEEEEECCCCCeEeeCCcc
Confidence 111 1469999998753 679999999999999999864
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=5.6e-48 Score=456.42 Aligned_cols=414 Identities=16% Similarity=0.255 Sum_probs=273.6
Q ss_pred CCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCC
Q 002161 331 SFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410 (958)
Q Consensus 331 ~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~ 410 (958)
.+++.||||+++|+|..++.+. .|+++|++++ |+||++||||+|||+||++...
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~----~Gdl~gi~~~-------ldyl~~lGv~~i~l~P~~~~~~--------------- 60 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSG----TGDLRGVTQR-------LDYLQKLGVDAIWLTPFYVSPQ--------------- 60 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCC----CcCHHHHHHh-------hHHHHhCCCCEEEECCCCCCCC---------------
Confidence 4688999999999998765433 5999998754 9999999999999999996532
Q ss_pred CcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhH
Q 002161 411 GLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTI 490 (958)
Q Consensus 411 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~ 490 (958)
.+|||++.+|+.++++||| .+
T Consensus 61 ----------------------------------------------------~~~gY~~~d~~~id~~~Gt-------~~ 81 (551)
T PRK10933 61 ----------------------------------------------------VDNGYDVANYTAIDPTYGT-------LD 81 (551)
T ss_pred ----------------------------------------------------CCCCCCcccCCCcCcccCC-------HH
Confidence 4689999999999999999 46
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCC--cceEecCC------C-------Cc-ccc--------
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP--GYYLRRNS------D-------GF-IEH-------- 546 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP--~YY~r~~~------~-------G~-~~~-------- 546 (958)
||++||++||++||+||||+|+|||+..++|...+ .++-.| .||.+.+. . |. +..
T Consensus 82 d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~-~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 160 (551)
T PRK10933 82 DFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREA-LNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY 160 (551)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhh-cCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceE
Confidence 89999999999999999999999999988886443 333333 45543321 0 00 000
Q ss_pred ----CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHH--HH--------------HHHHHHHHhhccc
Q 002161 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKS--TM--------------MKAKHALHSLTKE 606 (958)
Q Consensus 547 ----stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~--~~--------------~~~~~al~~i~~~ 606 (958)
....+++|++||+|+++|++++++|+ ++||||||||+++|+++. ++ .++.+.++++.+.
T Consensus 161 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 161 LHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRD 239 (551)
T ss_pred eecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHH
Confidence 01357999999999999999999999 589999999999999863 11 1233344444322
Q ss_pred ccCcCCCCceEeCccccccc--ccccccCcccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCC
Q 002161 607 IHGVDGSSIYIYGEGWDFGE--VAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDH 684 (958)
Q Consensus 607 ~~~~~~~~~~l~GEgWd~ge--v~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~ 684 (958)
. ...++++++||.|.... +.... ...+.+++ ..||.. ..+.. +..|.... ...
T Consensus 240 ~--~~~~~~~~vgE~~~~~~~~~~~y~-~~~~~~~~------~~fnf~--~~~~~-----------~~~~~~~~---~~~ 294 (551)
T PRK10933 240 V--FTPRGLMTVGEMSSTSLEHCQRYA-ALTGSELS------MTFNFH--HLKVD-----------YPNGEKWT---LAK 294 (551)
T ss_pred h--hcccCcEEEEeecCCCHHHHHHhh-cccCCeee------eEecHH--Hhhhh-----------hccCCccc---ccc
Confidence 1 11246899999995321 11000 00111111 235442 22111 11110000 000
Q ss_pred CChHHHHHHHHHhHhhHHhhccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHh----
Q 002161 685 GTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV---- 760 (958)
Q Consensus 685 g~~~~~~~~L~~~~d~i~~glagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l---- 760 (958)
.....++..+.+.. .+ + ....-..+|++|||..|+...+
T Consensus 295 ~~~~~~~~~~~~~~----~~--------------------------------~-~~~~~~~~fl~NHD~~R~~sr~g~~~ 337 (551)
T PRK10933 295 PDFVALKTLFRHWQ----QG--------------------------------M-HNVAWNALFWCNHDQPRIVSRFGDEG 337 (551)
T ss_pred cCHHHHHHHHHHHH----Hh--------------------------------h-cccCeeccccCCCCcccHHHHcCCch
Confidence 01111111111110 00 0 0112335799999998876544
Q ss_pred ---------------cCCCeeeEecCccccccCCCC-----------CCCC--------------------CCCCCcccc
Q 002161 761 ---------------SLKGIPFFHCGDEILRSKSLD-----------RDSY--------------------NSGDWLNRI 794 (958)
Q Consensus 761 ---------------~~~GiPfiy~GdEigrSks~d-----------~nsY--------------------~sgD~~N~~ 794 (958)
.+.|+||||||+|+||+...- .+-| .+...+.+|
T Consensus 338 ~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPM 417 (551)
T PRK10933 338 EYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPM 417 (551)
T ss_pred hHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCcccc
Confidence 234999999999999987310 0000 011136789
Q ss_pred cCCCCCC-CCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecC
Q 002161 795 DFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNT 873 (958)
Q Consensus 795 dw~~~~n-~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~ 873 (958)
.|+...| +|..+- .|..+.+.....+++.+..+..+++++||+||+|||++|+|+.|+++.+.. .
T Consensus 418 qW~~~~~~GFs~~~--------pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~------~ 483 (551)
T PRK10933 418 QWDNGDNAGFTQGE--------PWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLP------N 483 (551)
T ss_pred ccCCCCCCCCCCCC--------CCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEecc------C
Confidence 9987655 565543 476666666666677777777789999999999999999999999653311 1
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCCC
Q 002161 874 GPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPAL 924 (958)
Q Consensus 874 g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~l 924 (958)
.++|++|.|..+. +.++||+|.+.++++++++.+
T Consensus 484 ----~~~v~af~R~~~~-------------~~~lvv~N~s~~~~~~~~~~~ 517 (551)
T PRK10933 484 ----HPSLWCYRREWQG-------------QTLLVIANLSREPQPWQPGQM 517 (551)
T ss_pred ----CCcEEEEEEEcCC-------------cEEEEEEECCCCCeeeecCcc
Confidence 1469999998753 689999999999999998743
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.6e-45 Score=441.00 Aligned_cols=386 Identities=16% Similarity=0.243 Sum_probs=243.2
Q ss_pred CCCCCceEEEEEccccccCCCCCCC--------------CCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCC
Q 002161 330 LSFSDISIYELHVRDFSVSDHTVHP--------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAG 395 (958)
Q Consensus 330 ~~~~d~vIYElHVrdFs~~d~s~~~--------------~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~ 395 (958)
..|++.+||++.+++|..++++... -+.|+++|+++ +|+||++||||+|||+||++...
T Consensus 185 ~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~-------kLdyl~~LGv~aIwlsPi~~~~~ 257 (683)
T PRK09505 185 FDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTE-------KLDYLQQLGVNALWISSPLEQIH 257 (683)
T ss_pred hhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHH-------hhHHHHHcCCCEEEeCccccccc
Confidence 4678899999999999887753211 13477777765 59999999999999999998642
Q ss_pred CCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCc
Q 002161 396 VDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVP 475 (958)
Q Consensus 396 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ap 475 (958)
........ ..++ ...+|||++.+|+.+
T Consensus 258 ~~~~~g~~-------------------------------------g~~~----------------~~~yhgY~~~D~~~i 284 (683)
T PRK09505 258 GWVGGGTK-------------------------------------GDFP----------------HYAYHGYYTLDWTKL 284 (683)
T ss_pred cccccccc-------------------------------------cCCC----------------cCCCCCCCccccccC
Confidence 10000000 0000 025899999999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCC-C----CCcc------CCCCCc-c---------
Q 002161 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFD-D----NSVL------DKVVPG-Y--------- 534 (958)
Q Consensus 476 e~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~-~----~svl------dk~vP~-Y--------- 534 (958)
+++||| .+|||+||++||++||+||||+|+||++.....+ . ..++ .+..|. |
T Consensus 285 d~~~Gt-------~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~ 357 (683)
T PRK09505 285 DANMGT-------EADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQ 357 (683)
T ss_pred CCCCCC-------HHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccc
Confidence 999999 4689999999999999999999999998432100 0 0000 000111 1
Q ss_pred -eEecC------CCCccccC-------------------------CCcCCCCCC-----------------------CHH
Q 002161 535 -YLRRN------SDGFIEHS-------------------------TCMNNTASE-----------------------HYM 559 (958)
Q Consensus 535 -Y~r~~------~~G~~~~s-------------------------tc~~d~a~e-----------------------~~m 559 (958)
||..+ ....++.+ ...++++++ |+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~ 437 (683)
T PRK09505 358 NWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYT 437 (683)
T ss_pred cccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHH
Confidence 11110 00111110 123445554 569
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH-------HhhcccccCcCCCCceEeCccccccccccccc
Q 002161 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL-------HSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGR 632 (958)
Q Consensus 560 v~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al-------~~i~~~~~~~~~~~~~l~GEgWd~gev~~~~~ 632 (958)
|+++|++++++|+++|||||||+|++.|+++++|++++.++ ++.+++.. .+.++++++||.|..+... ..
T Consensus 438 Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~-~~~~~~~~vGEvw~~~~~~--~~ 514 (683)
T PRK09505 438 PRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKA-LDDAPFWMTGEAWGHGVMK--SD 514 (683)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccc-cccCCeEEEEEecCCchhh--HH
Confidence 99999999999999999999999999999999999887766 34444311 1234699999999644211 00
Q ss_pred CcccccccCCCCceeecchHHHHhhcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHhHhhHHhhccccchhh
Q 002161 633 GVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDF 712 (958)
Q Consensus 633 ~~~a~q~~l~gt~ig~fnDrlRdavrgg~~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~~~~d~i~~glagnl~~~ 712 (958)
-.+ + .--+.||..++.++... +. ....+. .+ ...
T Consensus 515 ---y~~-~---~fDsv~NF~~~~~~~~~----------~~-----------------~~~~l~----~~-------~~~- 548 (683)
T PRK09505 515 ---YYR-H---GFDAMINFDYQEQAAKA----------VD-----------------CLAQMD----PT-------YQQ- 548 (683)
T ss_pred ---HHh-h---cCccccCchHHHHHHHH----------HH-----------------HHHHHH----HH-------HHH-
Confidence 001 1 01145666666554420 00 000000 00 000
Q ss_pred hccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHhc--------------CCCeeeEecCccccccC
Q 002161 713 QLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS--------------LKGIPFFHCGDEILRSK 778 (958)
Q Consensus 713 ~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~--------------~~GiPfiy~GdEigrSk 778 (958)
|.. ...+...+||++|||+.|+..... ..|+|+||||+|+||++
T Consensus 549 -----------------~~~-----~~~~~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~g 606 (683)
T PRK09505 549 -----------------MAE-----KLQDFNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARPF 606 (683)
T ss_pred -----------------Hhh-----hcCccceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCccC
Confidence 000 002234589999999988765332 23999999999999975
Q ss_pred CCC-CCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccc
Q 002161 779 SLD-RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFR 857 (958)
Q Consensus 779 s~d-~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafr 857 (958)
... .|.+. +-+..|+|.... .+..+++++||+|++||+++|+|+
T Consensus 607 g~~g~DP~~--~~R~~M~W~~~~---------------------------------~~~~~Ll~~~kkLi~LRk~~pAL~ 651 (683)
T PRK09505 607 GPTGSDPLQ--GTRSDMNWQEVS---------------------------------GKSAALLAHWQKLGQFRARHPAIG 651 (683)
T ss_pred CCCCCCCcc--cccccCCccccc---------------------------------cchHHHHHHHHHHHHHHhhCHHhh
Confidence 421 12210 123345554210 011479999999999999999999
Q ss_pred cCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCC
Q 002161 858 LRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSS 913 (958)
Q Consensus 858 lgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s 913 (958)
.|+.+.+ .. .++++|.|..+. +.++||+|..
T Consensus 652 ~G~~~~l-------~~-----~~~~aF~R~~~~-------------d~vlVv~~~~ 682 (683)
T PRK09505 652 AGKQTTL-------SL-----KQYYAFVREHGD-------------DKVMVVWAGQ 682 (683)
T ss_pred CCceEEe-------cc-----CCEEEEEEEeCC-------------CEEEEEEeCC
Confidence 9986432 11 358999998753 6899999864
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=3.6e-40 Score=385.12 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=137.3
Q ss_pred cccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhh
Q 002161 359 GYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAE 438 (958)
Q Consensus 359 ty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 438 (958)
+|.++++ +|+||++||||+|||+|+|+..+
T Consensus 20 ~~~~I~~-------kldyl~~LGvtaIwl~P~~~~~~------------------------------------------- 49 (479)
T PRK09441 20 LWNRLAE-------RAPELAEAGITAVWLPPAYKGTS------------------------------------------- 49 (479)
T ss_pred HHHHHHH-------HHHHHHHcCCCEEEeCCCccCCC-------------------------------------------
Confidence 4556654 59999999999999999998652
Q ss_pred hhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCC---------CcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEE
Q 002161 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWG---------VPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLD 509 (958)
Q Consensus 439 ~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~---------ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlD 509 (958)
...+|||+|.+|| .++++|||. +|||+||++||++||+||||
T Consensus 50 ----------------------~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~-------~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 50 ----------------------GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK-------EELLNAIDALHENGIKVYAD 100 (479)
T ss_pred ----------------------CCCCCCCCeecccccccccccCCcCcCcCCH-------HHHHHHHHHHHHCCCEEEEE
Confidence 0257999999999 789999994 58999999999999999999
Q ss_pred eeeccccCCC--CCCCC------------------CccCCC-CC-----------cceEecCC--------CCcc-----
Q 002161 510 VVYNHLQGSG--PFDDN------------------SVLDKV-VP-----------GYYLRRNS--------DGFI----- 544 (958)
Q Consensus 510 VVyNHt~~~g--~~~~~------------------svldk~-vP-----------~YY~r~~~--------~G~~----- 544 (958)
+|+||++... +|... ..+..+ .| .||+.... .+.+
T Consensus 101 ~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (479)
T PRK09441 101 VVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGD 180 (479)
T ss_pred ECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCC
Confidence 9999998532 22210 000000 01 12221110 0000
Q ss_pred -ccC-------------CCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCc
Q 002161 545 -EHS-------------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGV 610 (958)
Q Consensus 545 -~~s-------------tc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~ 610 (958)
..+ ...+++|++||.|+++|++.+++|+++|||||||+|++.|++.++|.++++++++..+
T Consensus 181 ~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~----- 255 (479)
T PRK09441 181 GKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAG----- 255 (479)
T ss_pred CCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcC-----
Confidence 001 1256999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCceEeCcccccc
Q 002161 611 DGSSIYIYGEGWDFG 625 (958)
Q Consensus 611 ~~~~~~l~GEgWd~g 625 (958)
++++++||.|+..
T Consensus 256 --~~~~~vGE~~~~~ 268 (479)
T PRK09441 256 --KDLFIVGEYWSHD 268 (479)
T ss_pred --CCeEEEEeecCCC
Confidence 4699999999754
No 26
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=2e-39 Score=351.05 Aligned_cols=178 Identities=26% Similarity=0.443 Sum_probs=145.1
Q ss_pred ccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchh
Q 002161 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 437 (958)
|+|.|+++ +|+||++||||+|||+||++...
T Consensus 1 Gd~~gi~~-------kLdyl~~lGv~~I~l~Pi~~~~~------------------------------------------ 31 (316)
T PF00128_consen 1 GDFRGIID-------KLDYLKDLGVNAIWLSPIFESPN------------------------------------------ 31 (316)
T ss_dssp SSHHHHHH-------THHHHHHHTESEEEESS-EESSS------------------------------------------
T ss_pred CCHHHHHH-------hhHHHHHcCCCceeccccccccc------------------------------------------
Confidence 78888865 49999999999999999998431
Q ss_pred hhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccC
Q 002161 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (958)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~ 517 (958)
.+|||+|.+|++++++||| .+|||+||++||++||+||||+|+||++.
T Consensus 32 -------------------------~~~gY~~~d~~~vd~~~Gt-------~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 32 -------------------------GYHGYDPSDYYAVDPRFGT-------MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp -------------------------STTTTSESEEEEESTTTBH-------HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred -------------------------ccccccceeeeccccccch-------hhhhhhhhhccccccceEEEeeecccccc
Confidence 5899999999999999999 56999999999999999999999999999
Q ss_pred CCCCCCC--CccCCCCCcceEecCC----CCcc---------c---------cCCCcCCCCCCCHHHHHHHHHHHHHHHH
Q 002161 518 SGPFDDN--SVLDKVVPGYYLRRNS----DGFI---------E---------HSTCMNNTASEHYMVERLIIDDLLCWAV 573 (958)
Q Consensus 518 ~g~~~~~--svldk~vP~YY~r~~~----~G~~---------~---------~stc~~d~a~e~~mv~k~iiDsl~~W~~ 573 (958)
.++|... ...+...+.||.+.+. .+.+ . ....++++|++|++|+++|++++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~ 159 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE 159 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh
Confidence 8876321 1123334567765321 1111 1 1234568899999999999999999997
Q ss_pred hCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCcccccc
Q 002161 574 NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG 625 (958)
Q Consensus 574 ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~g 625 (958)
+ +|||||||+++++++++|.++++++++..+ +++++||.|...
T Consensus 160 ~-giDGfR~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~E~~~~~ 202 (316)
T PF00128_consen 160 E-GIDGFRLDAAKHIPKEFWKEFRDEVKEEKP--------DFFLIGEVWGGD 202 (316)
T ss_dssp T-TESEEEETTGGGSSHHHHHHHHHHHHHHHT--------TSEEEEEESSSS
T ss_pred c-eEeEEEEccccccchhhHHHHhhhhhhhcc--------ccceeeeeccCC
Confidence 5 699999999999999999999999999874 699999999754
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=4.8e-36 Score=344.35 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=130.4
Q ss_pred CccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccch
Q 002161 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (958)
Q Consensus 357 rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 436 (958)
.|.|.++++ +|+||++||||+|||+|+++..
T Consensus 40 gg~~~~i~~-------kldyL~~LGvtaIWL~P~~~s~------------------------------------------ 70 (428)
T PLN00196 40 GGWYNFLMG-------KVDDIAAAGITHVWLPPPSHSV------------------------------------------ 70 (428)
T ss_pred CcCHHHHHH-------HHHHHHHcCCCEEEeCCCCCCC------------------------------------------
Confidence 477887754 5999999999999999998643
Q ss_pred hhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcC-CCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccc
Q 002161 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPK-GSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL 515 (958)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape-~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt 515 (958)
.+|||+|.+||.++ ++|||. +|||+||++||++||+||+|+|+||+
T Consensus 71 --------------------------s~hGY~~~D~y~ld~~~fGt~-------~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 71 --------------------------SEQGYMPGRLYDLDASKYGNE-------AQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred --------------------------CCCCCCccccCCCCcccCCCH-------HHHHHHHHHHHHCCCEEEEEECccCc
Confidence 37899999999998 589994 58999999999999999999999999
Q ss_pred cCCCCCCCC--CccCCC----CCcceE-ec--------CCCCccc---cCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 002161 516 QGSGPFDDN--SVLDKV----VPGYYL-RR--------NSDGFIE---HSTCMNNTASEHYMVERLIIDDLLCWAVNYKV 577 (958)
Q Consensus 516 ~~~g~~~~~--svldk~----vP~YY~-r~--------~~~G~~~---~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~I 577 (958)
+..+..... ..+..- ...||+ .. +..+.+. .....+|+|.+||+|+++|++.+++|++++||
T Consensus 118 ~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~Gi 197 (428)
T PLN00196 118 TAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGF 197 (428)
T ss_pred ccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 865431100 001110 012221 10 0111211 12356899999999999999999988889999
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCccccc
Q 002161 578 DGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (958)
Q Consensus 578 DGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~ 624 (958)
||||||+++|++.+++.+ .+++.. ..+++||.|+.
T Consensus 198 DG~RlD~ak~~~~~f~~~---~v~~~~---------p~f~VGE~W~~ 232 (428)
T PLN00196 198 DAWRLDFAKGYSAEVAKV---YIDGTE---------PSFAVAEIWTS 232 (428)
T ss_pred CEEEeehhhhCCHHHHHH---HHHccC---------CcEEEEEEecc
Confidence 999999999999998764 344443 26899999974
No 28
>PLN02361 alpha-amylase
Probab=100.00 E-value=6.7e-35 Score=331.72 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=125.2
Q ss_pred hhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHH
Q 002161 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (958)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~ 450 (958)
+++|+||++||||+|||+|+++..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~-------------------------------------------------------- 55 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSL-------------------------------------------------------- 55 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCC--------------------------------------------------------
Confidence 456999999999999999999653
Q ss_pred HHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCC--CCCCccC
Q 002161 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF--DDNSVLD 528 (958)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~--~~~svld 528 (958)
.+|||+|.+||.++++||| .+|||+||++||++||+||+|+|+||++...+. ...+.++
T Consensus 56 ------------~~~GY~~~d~y~~~~~~Gt-------~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~ 116 (401)
T PLN02361 56 ------------APEGYLPQNLYSLNSAYGS-------EHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYD 116 (401)
T ss_pred ------------CCCCCCcccccccCcccCC-------HHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCC
Confidence 2689999999999999999 458999999999999999999999999643211 0111111
Q ss_pred CCCCcce-----EecCCCCcc---ccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH
Q 002161 529 KVVPGYY-----LRRNSDGFI---EHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL 600 (958)
Q Consensus 529 k~vP~YY-----~r~~~~G~~---~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al 600 (958)
.....|. ......+.. .+....+|+|++||.|+++|++.+++|++++||||||||+++|++.+++++..+++
T Consensus 117 g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~ 196 (401)
T PLN02361 117 GIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAA 196 (401)
T ss_pred CCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhh
Confidence 1100111 000000111 12235789999999999999999986666799999999999999999998876542
Q ss_pred HhhcccccCcCCCCceEeCccccc
Q 002161 601 HSLTKEIHGVDGSSIYIYGEGWDF 624 (958)
Q Consensus 601 ~~i~~~~~~~~~~~~~l~GEgWd~ 624 (958)
. .++++||.|+.
T Consensus 197 ---~---------p~f~VGE~w~~ 208 (401)
T PLN02361 197 ---K---------PLFSVGEYWDS 208 (401)
T ss_pred ---C---------CeEEEEEEecC
Confidence 2 26899999975
No 29
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=4.9e-32 Score=319.58 Aligned_cols=234 Identities=20% Similarity=0.273 Sum_probs=166.3
Q ss_pred ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcceeecccCCC---c-eEEeeCCCCCCCCccccccccCC
Q 002161 251 KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR---R-TLLVNLDSDTLKPEGWDKLVYEK 326 (958)
Q Consensus 251 ~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~---~-s~vvDl~~~~~~P~~W~~~~~~~ 326 (958)
+..+|.|...++...+|..|+..|.. +. | + ..+..+|++-+..+.. + .++.|+.. -.+..|.. .+
T Consensus 326 ~~~~~w~~~~~~~i~H~s~~k~~~~~--~~-g--~-~~RiPaw~~~~~~~~~~~~~~~~~w~P~~--~~~y~~k~---~~ 394 (872)
T PLN03244 326 KGRKAWLKKYIPAIPHGSKYRLYFNT--PD-G--P-LERIPAWATYVLPDDDGKQAFAIHWEPPP--EAAHKWKN---MK 394 (872)
T ss_pred cccCceeecccCCCCCCCeEEEEEEc--CC-C--C-cccCCCCeeeEEecCCCCceeeeEeCCCc--ccCCccCC---CC
Confidence 56789999999999999999988863 21 3 2 3566778877765532 2 22333321 22345765 34
Q ss_pred CCCCCCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCccccccccc
Q 002161 327 PDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSV 406 (958)
Q Consensus 327 P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~ 406 (958)
|. .+....|||.||.-.+. .+. -|+|..|+++
T Consensus 395 p~--~p~~lrIYE~HvGms~~-e~k-----v~ty~eF~~~---------------------------------------- 426 (872)
T PLN03244 395 PK--VPESLRIYECHVGISGS-EPK-----ISSFEEFTEK---------------------------------------- 426 (872)
T ss_pred CC--CCCCceEEEEEeeecCC-CCC-----cccHHHHhhc----------------------------------------
Confidence 43 45778999999998763 333 4999888642
Q ss_pred CCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCC
Q 002161 407 GSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS 486 (958)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~ 486 (958)
+.+||||+++|||
T Consensus 427 --------------------------------------------------------------vt~fFApssRYGT----- 439 (872)
T PLN03244 427 --------------------------------------------------------------VTNFFAASSRYGT----- 439 (872)
T ss_pred --------------------------------------------------------------cCcccccCcccCC-----
Confidence 2478999999999
Q ss_pred chhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHH
Q 002161 487 CRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIID 566 (958)
Q Consensus 487 ~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiD 566 (958)
.+|||+||++||++||+||||||+||++.++... ...+|.....||+. +..|....+ .|...|+.+++|+++|++
T Consensus 440 --PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDGt~~~Yf~~-~~~g~~~~W-Gs~~fnyg~~EVr~FLLs 514 (872)
T PLN03244 440 --PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFHT-GKRGHHKHW-GTRMFKYGDLDVLHFLIS 514 (872)
T ss_pred --HHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCCCccceecc-CCCCccCCC-CCceecCCCHHHHHHHHH
Confidence 4589999999999999999999999998765322 23455432245553 344544334 346779999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCCCc-------------------------HHHHHHHHHHHHhhcccccCcCCCCceEeCcc
Q 002161 567 DLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEG 621 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~~i~-------------------------~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEg 621 (958)
++++|++||||||||||++..|. ..++..+.+.|+++. |++++|+|-
T Consensus 515 na~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~--------P~~itIAED 586 (872)
T PLN03244 515 NLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALH--------PKIITIAED 586 (872)
T ss_pred HHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhC--------CCeEEEEEc
Confidence 99999999999999999883332 123455666667665 569999996
Q ss_pred cc
Q 002161 622 WD 623 (958)
Q Consensus 622 Wd 623 (958)
..
T Consensus 587 sS 588 (872)
T PLN03244 587 AT 588 (872)
T ss_pred CC
Confidence 53
No 30
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=100.00 E-value=3.6e-35 Score=294.70 Aligned_cols=140 Identities=59% Similarity=1.004 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCC
Q 002161 797 SYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPS 876 (958)
Q Consensus 797 ~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~ 876 (958)
++++||||+||||++||+++|++|+++|+|++++|++++|..+.++|++||+||++||+||++++++|++||.|+|+|++
T Consensus 1 t~q~NnwgvGLP~~~kn~~~W~~i~~ll~d~~~kP~~~~I~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~ 80 (168)
T PF11852_consen 1 TYQDNNWGVGLPPADKNGDNWPLIRPLLADPALKPSPADIAAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPD 80 (168)
T ss_dssp TSS--S-SSS---HHHHGGGHHHHHHHHCTCCGS--HHHHHHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT
T ss_pred CCccCCCCcCCCcccccccchhhhhhhccCCccCCCHHHHHHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCCCCCCceeccccchhccCC
Q 002161 877 AVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVAYILP 941 (958)
Q Consensus 877 ~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~l~~~~~~L~~~~~~~~~~ 941 (958)
|+||||+|+|+|+.+. .+|+|+.++.||||||++++++++++|.+.| |+|||+|+.++|+
T Consensus 81 q~pGvIvM~idDg~~~---~~dlD~~~~~iVVvfNat~~~~t~~~~~~~g--~~Lhpvq~~~~D~ 140 (168)
T PF11852_consen 81 QTPGVIVMSIDDGAGV---GADLDPNYDGIVVVFNATPEEQTFTVPGLAG--FQLHPVQAESSDP 140 (168)
T ss_dssp --TTEEEEEEE-SCSS---SS-S-SSEEEEEEEEE-SSS-EEEETGGGSS---EE-HHHHTGSGT
T ss_pred CCCcEEEEEecCCCcc---ccccCCccCeEEEEEeCCCCeEEEEcCCcCc--eEechHHhcccch
Confidence 9999999999997643 4799999999999999999999999998776 9999999999876
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-32 Score=316.10 Aligned_cols=190 Identities=24% Similarity=0.381 Sum_probs=151.6
Q ss_pred ceEEEEEccccccCCCCCCC-CC-CccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCc
Q 002161 335 ISIYELHVRDFSVSDHTVHP-DF-RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (958)
Q Consensus 335 ~vIYElHVrdFs~~d~s~~~-~~-rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~ 412 (958)
.+||++.+|+|...+.+.+. .. .|++.|+++ +|+||++|||++|||+|+++...
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~-------~LdYl~~LGv~aiwl~Pi~~s~~----------------- 56 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITE-------KLDYLKELGVDAIWLSPIFESPQ----------------- 56 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHH-------hhhHHHHhCCCEEEeCCCCCCCc-----------------
Confidence 48999999999887652111 12 389988875 49999999999999999998642
Q ss_pred ccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHH
Q 002161 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (958)
Q Consensus 413 ~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Ef 492 (958)
.++||++.+|+.+++.||| +++|
T Consensus 57 --------------------------------------------------~~~gY~~~Dy~~id~~~Gt-------~~d~ 79 (505)
T COG0366 57 --------------------------------------------------ADHGYDVSDYTKVDPHFGT-------EEDF 79 (505)
T ss_pred --------------------------------------------------cCCCccccchhhcCcccCC-------HHHH
Confidence 4899999999999999999 5689
Q ss_pred HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCC---cceEecCC--------------CCc-cc--------c
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP---GYYLRRNS--------------DGF-IE--------H 546 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP---~YY~r~~~--------------~G~-~~--------~ 546 (958)
++||+++|++||+||||+|+|||+..++|+..+...+..| .||.+... .|. .. .
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYL 159 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEE
Confidence 9999999999999999999999999988875544444321 56665321 011 10 0
Q ss_pred ---CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH-----------HHHHHHHHHHHhhccc
Q 002161 547 ---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------STMMKAKHALHSLTKE 606 (958)
Q Consensus 547 ---stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~-----------~~~~~~~~al~~i~~~ 606 (958)
..-.+++|++|+.|++.|.+.+++|++ .||||||+|++.|+++ .++..+.+.+++..++
T Consensus 160 ~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (505)
T COG0366 160 HLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPD 232 (505)
T ss_pred EecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHH
Confidence 112457899999999999999999998 8999999999999999 6678888888888754
No 32
>PLN02784 alpha-amylase
Probab=99.97 E-value=5.9e-31 Score=314.47 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=140.4
Q ss_pred CCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCC
Q 002161 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (958)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~ 411 (958)
......||+.+..|.-.... . ..=|.+++ ++|+||++||||+|||+|+++..
T Consensus 496 ~~~~~~~eVmlQgF~Wds~~---d-g~w~~~I~-------ekldyL~~LG~taIWLpP~~~s~----------------- 547 (894)
T PLN02784 496 SGTGSGFEILCQGFNWESHK---S-GRWYMELG-------EKAAELSSLGFTVVWLPPPTESV----------------- 547 (894)
T ss_pred ccccCCceEEEEeEEcCcCC---C-CchHHHHH-------HHHHHHHHhCCCEEEeCCCCCCC-----------------
Confidence 34567888888888742111 1 12256665 45999999999999999998643
Q ss_pred cccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHH
Q 002161 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (958)
Q Consensus 412 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~E 491 (958)
.+|||+|.+||.++++||| .+|
T Consensus 548 ---------------------------------------------------s~~GY~p~D~y~lds~yGT-------~~E 569 (894)
T PLN02784 548 ---------------------------------------------------SPEGYMPKDLYNLNSRYGT-------IDE 569 (894)
T ss_pred ---------------------------------------------------CCCCcCcccccccCcCcCC-------HHH
Confidence 3689999999999999999 468
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCC--CCCccCCCCCcceEecCC-----------CCcc---ccCCCcCCCCC
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFD--DNSVLDKVVPGYYLRRNS-----------DGFI---EHSTCMNNTAS 555 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~--~~svldk~vP~YY~r~~~-----------~G~~---~~stc~~d~a~ 555 (958)
||+||++||++||+||+|+|+||++...... ..+.+. ++|.+.+. .|.. .+..+.+|+|+
T Consensus 570 Lk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~----g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh 645 (894)
T PLN02784 570 LKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFG----GRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 645 (894)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccC----CeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCC
Confidence 9999999999999999999999997531100 011111 11111110 0111 12346789999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCccccc
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~ 624 (958)
+|+.|++.|.+.+.+|++++||||||||+++|....++.+. +++.. ..|++||.|+.
T Consensus 646 ~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkey---v~a~k---------p~F~VGEyWd~ 702 (894)
T PLN02784 646 SQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDY---MEASE---------PYFAVGEYWDS 702 (894)
T ss_pred CCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHH---HhccC---------CcEEEEEeccc
Confidence 99999999999999998999999999999999888875544 33433 26999999975
No 33
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.97 E-value=3.4e-29 Score=290.05 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=127.5
Q ss_pred ccccceeccchhhhhhHH-HHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccch
Q 002161 358 GGYLAFTLQNSAGVSHLK-KLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~-~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 436 (958)
|++.|++++ |+ ||+++ |+.|||||+|....
T Consensus 17 GdL~gl~~k-------Ld~yL~~l-v~~vhllPff~psp----------------------------------------- 47 (495)
T PRK13840 17 GGLKSLTAL-------LDGRLDGL-FGGVHILPFFYPID----------------------------------------- 47 (495)
T ss_pred CCHhHHHHH-------HHHHHHHH-hCeEEECCCccCCC-----------------------------------------
Confidence 899888765 99 59999 99999999995321
Q ss_pred hhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeecccc
Q 002161 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (958)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~ 516 (958)
+..+|||+.+|+.++++||| +++|++|++ ||+||||+|+|||+
T Consensus 48 -------------------------~sD~GYdv~DY~~VDP~fGt-------~eDf~~L~~-----giklmlDlV~NHtS 90 (495)
T PRK13840 48 -------------------------GADAGFDPIDHTKVDPRLGD-------WDDVKALGK-----THDIMADLIVNHMS 90 (495)
T ss_pred -------------------------CCCCCCCCcChhhcCcccCC-------HHHHHHHHh-----CCeEEEEECCCcCC
Confidence 13569999999999999999 568999995 99999999999999
Q ss_pred CCCCCCCCCcc---CCCCCcceEecCC------------------CCc-------------ccc---CCCcCCCCCCCHH
Q 002161 517 GSGPFDDNSVL---DKVVPGYYLRRNS------------------DGF-------------IEH---STCMNNTASEHYM 559 (958)
Q Consensus 517 ~~g~~~~~svl---dk~vP~YY~r~~~------------------~G~-------------~~~---stc~~d~a~e~~m 559 (958)
..++|+..+.- +....+||.+.+. .|. +.+ +...+|+|++||.
T Consensus 91 ~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~ 170 (495)
T PRK13840 91 AESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAA 170 (495)
T ss_pred CCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHH
Confidence 99998744211 1212356654321 011 111 1135789999999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCCcHH-------------HHHHHHHHHHhhcccccCcCCCCceEeCccccc
Q 002161 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKS-------------TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (958)
Q Consensus 560 v~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~-------------~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~ 624 (958)
|+++|++.+++|++ .||||||+|+++++.|. ++++++..++.. +..+++|.|..
T Consensus 171 V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~----------~~~ll~Ei~~y 237 (495)
T PRK13840 171 GWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARAR----------GMEVLVEIHSY 237 (495)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhc----------CCEEEEeCccc
Confidence 99999999999996 69999999999876552 455566655543 24588999863
No 34
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.96 E-value=3.9e-29 Score=288.04 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=102.3
Q ss_pred CCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccC---CCCCcceEec--
Q 002161 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD---KVVPGYYLRR-- 538 (958)
Q Consensus 464 nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svld---k~vP~YY~r~-- 538 (958)
++|||+.+|+.++++||| +++|++|+++ |+||+|+|+|||+..++|+..+.-+ ..-.+||...
T Consensus 45 D~GYdv~DY~~VDP~~Gt-------~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~ 112 (470)
T TIGR03852 45 DRGFAPMDYTEVDPAFGD-------WSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKD 112 (470)
T ss_pred CCCcCchhhceeCcccCC-------HHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEeccc
Confidence 689999999999999999 5689999998 7999999999999999987543322 1123566611
Q ss_pred ---C--C---C--------------------C--cccc---CCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002161 539 ---N--S---D--------------------G--FIEH---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 539 ---~--~---~--------------------G--~~~~---stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~ 585 (958)
+ + + | .+.+ +...+|+|++||.|+++|.+.+++|+ +.||||||+|++
T Consensus 113 ~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv 191 (470)
T TIGR03852 113 FWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAF 191 (470)
T ss_pred ccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecc
Confidence 0 0 0 0 0111 12567999999999999999999999 579999999999
Q ss_pred CCCcHH-----HH--HHHHHHHHhhcccccCcCCCCceEeCcccc
Q 002161 586 GHIMKS-----TM--MKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (958)
Q Consensus 586 ~~i~~~-----~~--~~~~~al~~i~~~~~~~~~~~~~l~GEgWd 623 (958)
+++.|. ++ .+..+.++.+..- +..++++|++|.|.
T Consensus 192 ~~l~K~~Gt~c~~l~pet~~~l~~~r~~---~~~~~~~ll~E~~~ 233 (470)
T TIGR03852 192 AYAVKKLGTNDFFVEPEIWELLDEVRDI---LAPTGAEILPEIHE 233 (470)
T ss_pred hhhcccCCCCcccCChhHHHHHHHHHHH---hccCCCEEEeHhhh
Confidence 766554 11 1222222222210 01267999999983
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7.6e-27 Score=276.09 Aligned_cols=445 Identities=18% Similarity=0.210 Sum_probs=256.2
Q ss_pred CCCCceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCC
Q 002161 331 SFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410 (958)
Q Consensus 331 ~~~d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~ 410 (958)
.|+..+|||+.+|+|..++.+.. |++.|+++| |+||+++|+|+|||.|+++...
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~d~~----G~~~GI~~k-------ldyi~~lG~taiWisP~~~s~~--------------- 67 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDGDGV----GDLKGITSK-------LDYIKELGFTAIWLSPFTKSSK--------------- 67 (545)
T ss_pred hhhcCceeEEeccccccccCCCc----cccccchhh-------hhHHHhcCCceEEeCCCcCCCH---------------
Confidence 46778999999999998765542 999999875 9999999999999999998752
Q ss_pred CcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhH
Q 002161 411 GLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTI 490 (958)
Q Consensus 411 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~ 490 (958)
.++||++.+|+.++++||| ++
T Consensus 68 ----------------------------------------------------~~~GY~~~d~~~l~p~fGt-------~e 88 (545)
T KOG0471|consen 68 ----------------------------------------------------PDFGYDASDLEQLRPRFGT-------EE 88 (545)
T ss_pred ----------------------------------------------------HHhccCccchhhhcccccH-------HH
Confidence 2789999999999999999 67
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCC-CcceEecCCC----C---------------ccc-----
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVV-PGYYLRRNSD----G---------------FIE----- 545 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~v-P~YY~r~~~~----G---------------~~~----- 545 (958)
+|++||.++|++||++|+|+|.||++..++|+..+...+.. -.+|.+.+.. | ...
T Consensus 89 df~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~ 168 (545)
T KOG0471|consen 89 DFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGR 168 (545)
T ss_pred HHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccc
Confidence 89999999999999999999999999888877766666543 1123222110 0 000
Q ss_pred --c-----CCCcCCCCCCCHHHHHHHHHHHH-HHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceE
Q 002161 546 --H-----STCMNNTASEHYMVERLIIDDLL-CWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYI 617 (958)
Q Consensus 546 --~-----stc~~d~a~e~~mv~k~iiDsl~-~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l 617 (958)
- ....+|+|++|++|++.|.+.++ +|. ++||||||+|++.++...++. ..-++ ..+.-
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-------~~~~~------~p~~~ 234 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-------NMWPD------EPVFD 234 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-------ccccC------CCccc
Confidence 0 11246889999999999999999 776 689999999999999887643 11111 12455
Q ss_pred eCcccccccc-cccccCcccccccCCCCceeecchHHHHhhcCCC-CCCCCcccccccccccCCCCCCCCChHHHHHHHH
Q 002161 618 YGEGWDFGEV-AKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGS-PFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLA 695 (958)
Q Consensus 618 ~GEgWd~gev-~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrgg~-~F~~~~~qgf~~G~~~~~n~~~~g~~~~~~~~L~ 695 (958)
.||.|...+- ........-.+.. . -.++...+... .+. ..-+|..+...+-. ..... +....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~y~~~~~~--------~-~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~~-~~~~~~~ 300 (545)
T KOG0471|consen 235 VGEKLQDDNYVAYQYNDYGEDQPE--------I-HDLIRAERFLLDDYS--AAFGFGDKRILQTE--AYSSL-EQLLRLL 300 (545)
T ss_pred ceeEecCcchhhcccccccccchh--------h-hhHHHHHHhhhhhhh--hcccccchhhhhhh--hhccH-HHHHhhh
Confidence 5665543321 1000000000000 0 01111111100 000 00000000000000 00000 0000000
Q ss_pred HhHhhHHhh----ccccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccchHHHh-----------
Q 002161 696 AAKDHIQVG----LAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV----------- 760 (958)
Q Consensus 696 ~~~d~i~~g----lagnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l----------- 760 (958)
...+..+.. .-+++....+. ...-..+... .|.+... ..-...--.+.+||..++...+
T Consensus 301 ~n~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~-~~~~~~~---~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l 374 (545)
T KOG0471|consen 301 ENSSKPRGSDLPFNFDTLSDLGLT--VASIYKEVEV-DWLSNHD---TENRWAHWVLGNHDQARLASRFGSDSVDLLNVL 374 (545)
T ss_pred ccCCCCccccccchhhhhhhhhcc--chHHHHHHHH-HHHhcCC---ccCCceeeeecCccchhhHHHhcchhHHHHhHH
Confidence 000000000 00000000000 0000001110 1111000 0122345678889988877332
Q ss_pred --cCCCeeeEecCccccccCC--CCCCCCCCC--CCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchh
Q 002161 761 --SLKGIPFFHCGDEILRSKS--LDRDSYNSG--DWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKS 834 (958)
Q Consensus 761 --~~~GiPfiy~GdEigrSks--~d~nsY~sg--D~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~ 834 (958)
.+.|+|++|+|+|+++..- ...+..+.. .+..+|.|+.++| .|++ ..-..|-.+.......+++.+..
T Consensus 375 ~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~---~gfs---~~~~~~~~~~~~~~~~n~~~~~~ 448 (545)
T KOG0471|consen 375 LLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTN---AGFS---EASKTWLPVNADYTVINVKMQSG 448 (545)
T ss_pred hcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccc---cCCC---CccCcceeccccchhheeecccc
Confidence 2349999999999998655 223333321 2267788876643 3333 12234655555444455566666
Q ss_pred hHHHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCC
Q 002161 835 HILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSP 914 (958)
Q Consensus 835 ~~~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~ 914 (958)
+...+...|++++.||+++..++.|.. ++. ...++++++++..+. ...+++++|++.
T Consensus 449 ~~~s~~~~~~~~~~lr~~~~~~~~g~~--------~~~---~~~~~if~~~r~~~~------------~~~~~~~~~~~~ 505 (545)
T KOG0471|consen 449 DPQSTLKLFKRLLDLRKSERSYLHGSF--------VLF---AATPGLFSFSRNWDG------------NERFIAVLNFGD 505 (545)
T ss_pred CCccHHHHHHHHHHHhhhcccccccce--------eee---cCCCceEEEEeccCC------------CceEEEEEecCC
Confidence 667899999999999999875555542 111 124679999988754 367899999998
Q ss_pred CcEEEECCC
Q 002161 915 TEVSFVSPA 923 (958)
Q Consensus 915 ~~~~~~lp~ 923 (958)
.+....+-.
T Consensus 506 ~~~~~~~~~ 514 (545)
T KOG0471|consen 506 SPLSLNLTD 514 (545)
T ss_pred ccccccccc
Confidence 887765544
No 36
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.94 E-value=1.1e-24 Score=253.94 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcce-------
Q 002161 463 YNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYY------- 535 (958)
Q Consensus 463 ~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY------- 535 (958)
...|||..+| .+++.||| ++||++||+++|++||+||+|+|.|||+..+++.....-++-.|+||
T Consensus 111 ~D~gyDi~d~-~Idp~~GT-------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~ 182 (688)
T TIGR02455 111 IDGNFDRISF-DIDPLLGS-------EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIRE 182 (688)
T ss_pred CCCCCCcccC-ccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccc
Confidence 3569999995 99999999 57899999999999999999999999999887432111144557888
Q ss_pred ----EecCCC-C----------------------c----c------c--cC-----------------------CCcCCC
Q 002161 536 ----LRRNSD-G----------------------F----I------E--HS-----------------------TCMNNT 553 (958)
Q Consensus 536 ----~r~~~~-G----------------------~----~------~--~s-----------------------tc~~d~ 553 (958)
.+.+.. + . + + +| ...+++
T Consensus 183 ~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdL 262 (688)
T TIGR02455 183 EDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSL 262 (688)
T ss_pred cccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCcc
Confidence 222211 1 0 0 0 11 134689
Q ss_pred CCCCHH--HHHHHH-HHHHHHHHhCCccEEEEecCCCCc
Q 002161 554 ASEHYM--VERLII-DDLLCWAVNYKVDGFRFDLMGHIM 589 (958)
Q Consensus 554 a~e~~m--v~k~ii-Dsl~~W~~ey~IDGFRfDl~~~i~ 589 (958)
|+.||. +++.|+ |++++|. +.|+||||+|+++++.
T Consensus 263 Nw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg 300 (688)
T TIGR02455 263 NWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLG 300 (688)
T ss_pred CccCccHHHHHHHHHHHHHHHH-Hhccccceecccccee
Confidence 999999 999999 9999998 5899999999987764
No 37
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.92 E-value=3.2e-24 Score=259.16 Aligned_cols=179 Identities=22% Similarity=0.227 Sum_probs=133.1
Q ss_pred ccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchh
Q 002161 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 437 (958)
|||.+++ ++|+||++||||||||+|||+...
T Consensus 13 ~tf~~~~-------~~L~YL~~LGv~~V~lsPi~~a~~------------------------------------------ 43 (825)
T TIGR02401 13 FTFDDAA-------ALLPYLKSLGVSHLYLSPILTAVP------------------------------------------ 43 (825)
T ss_pred CCHHHHH-------HhhHHHHHcCCCEEEeCcCccCCC------------------------------------------
Confidence 7887765 559999999999999999997532
Q ss_pred hhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccC
Q 002161 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (958)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~ 517 (958)
+.+||||+.+|+.+++.||+ .++|++||++||++||+||||+|+||++.
T Consensus 44 ------------------------gs~hGYdv~D~~~idp~lGt-------~edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 44 ------------------------GSTHGYDVVDHSEINPELGG-------EEGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred ------------------------CCCCCCCCCCCCCcCCCCCC-------HHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 25799999999999999999 46899999999999999999999999997
Q ss_pred C---CCCCCC-------C----ccC--C----------------------------CC--------CcceEecCCC----
Q 002161 518 S---GPFDDN-------S----VLD--K----------------------------VV--------PGYYLRRNSD---- 541 (958)
Q Consensus 518 ~---g~~~~~-------s----vld--k----------------------------~v--------P~YY~r~~~~---- 541 (958)
. ++|... | .+| - ++ =.||+..-+-
T Consensus 93 ~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~t 172 (825)
T TIGR02401 93 HLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGT 172 (825)
T ss_pred ccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccc
Confidence 5 233210 0 010 0 00 0144332110
Q ss_pred -----------Cccc--------------cC---------------CCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEE
Q 002161 542 -----------GFIE--------------HS---------------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFR 581 (958)
Q Consensus 542 -----------G~~~--------------~s---------------tc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFR 581 (958)
|... .+ .....++.|+|.|.......+..|++++.|||+|
T Consensus 173 y~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlR 252 (825)
T TIGR02401 173 LPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLR 252 (825)
T ss_pred hhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEE
Confidence 0000 00 0123457999999999999999999998899999
Q ss_pred EecCCCC--cHHHHHHHHHHHHhhcccccCcCCCCceEeCc-ccccccc
Q 002161 582 FDLMGHI--MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE-GWDFGEV 627 (958)
Q Consensus 582 fDl~~~i--~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GE-gWd~gev 627 (958)
+|.+.++ |+..+.+.++++ +++.|++.| .|..+|.
T Consensus 253 IDh~dGL~dP~~Yl~rLr~~~-----------~~~~yivvEKIl~~~E~ 290 (825)
T TIGR02401 253 IDHIDGLADPEGYLRRLRELV-----------GPARYLVVEKILAPGEH 290 (825)
T ss_pred eccccccCChHHHHHHHHHhc-----------CCCceEEEEEeccCCCc
Confidence 9999999 888888877542 234789999 7777764
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.76 E-value=7.7e-19 Score=178.75 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=83.6
Q ss_pred EEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCC
Q 002161 339 ELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQN 418 (958)
Q Consensus 339 ElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~ 418 (958)
|+.++.|..++++. .|+|.+++++ |+||++||||+|||+|+++....
T Consensus 1 qi~~~~F~~~~~~~----~G~~~gi~~~-------l~yl~~lG~~~I~l~Pi~~~~~~---------------------- 47 (166)
T smart00642 1 QIYPDRFADGNGDG----GGDLQGIIEK-------LDYLKDLGVTAIWLSPIFESPQG---------------------- 47 (166)
T ss_pred CeeeccccCCCCCC----CcCHHHHHHH-------HHHHHHCCCCEEEECcceeCCCC----------------------
Confidence 46688998876654 6999998765 88999999999999999987531
Q ss_pred CCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHH
Q 002161 419 TFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQA 498 (958)
Q Consensus 419 ~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~a 498 (958)
...+|||++.+|++++++||| ++|||+||++
T Consensus 48 ------------------------------------------~~~~~gY~~~d~~~i~~~~Gt-------~~d~~~lv~~ 78 (166)
T smart00642 48 ------------------------------------------YPSYHGYDISDYKQIDPRFGT-------MEDFKELVDA 78 (166)
T ss_pred ------------------------------------------CCCCCCcCccccCCCCcccCC-------HHHHHHHHHH
Confidence 025899999999999999999 5689999999
Q ss_pred HhhcCCEEEEEeeeccccC
Q 002161 499 LNHIGLHVVLDVVYNHLQG 517 (958)
Q Consensus 499 lH~~Gi~VIlDVVyNHt~~ 517 (958)
||++||+||||+|+|||+.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999964
No 39
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=7.7e-18 Score=157.20 Aligned_cols=96 Identities=43% Similarity=0.726 Sum_probs=82.8
Q ss_pred CccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceee
Q 002161 210 LGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (958)
Q Consensus 210 LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~ 288 (958)
|||++.+++++|+||||+|++|+|+||+++....+..+++| +..+|+|++++++.++|.+|+|+|+... + ...+
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~---~--~~~~ 75 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVKVYK---G--ETNE 75 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEEEec---e--EEEE
Confidence 79999999999999999999999999987653344567899 6689999999999999999999998531 1 3458
Q ss_pred ecCcceeecccCCCceEEeeCC
Q 002161 289 ANDPYARGLSSDGRRTLLVNLD 310 (958)
Q Consensus 289 v~DPYA~~ls~ng~~s~vvDl~ 310 (958)
++||||++++.|+.+|+++|++
T Consensus 76 ~~DPyA~~~~~~~~~s~i~d~~ 97 (100)
T cd02860 76 VVDPYAKALSANGERSVDLDDK 97 (100)
T ss_pred EcCcccEeEeeCCCceEECChH
Confidence 9999999999999999998874
No 40
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.2e-15 Score=163.27 Aligned_cols=151 Identities=30% Similarity=0.417 Sum_probs=105.4
Q ss_pred CCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccC---CCCCCC---CCccC--CCCCcc-eE
Q 002161 466 GYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG---SGPFDD---NSVLD--KVVPGY-YL 536 (958)
Q Consensus 466 GYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~---~g~~~~---~svld--k~vP~Y-Y~ 536 (958)
.|.|..|- .+.+-|. -+||+.||..|++-|+|+++|||+||+.. +|.... .+..+ +--||- |.
T Consensus 79 RYQPvSYK-L~tRSGN-------E~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs 150 (504)
T KOG2212|consen 79 RYQPVSYK-LCTRSGN-------EDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYS 150 (504)
T ss_pred ecccceEE-eeccCCC-------HHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcc
Confidence 58999885 3444454 35999999999999999999999999983 211000 00001 111210 11
Q ss_pred ec--CC------CCccccC-------CC----cCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHH
Q 002161 537 RR--NS------DGFIEHS-------TC----MNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597 (958)
Q Consensus 537 r~--~~------~G~~~~s-------tc----~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~ 597 (958)
-. ++ .+.++++ .| .-|+|..+.-||.-|++-|.+.+ +.||-|||.|+++||..+.++.+.
T Consensus 151 ~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~ 229 (504)
T KOG2212|consen 151 GWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAIL 229 (504)
T ss_pred cccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHH
Confidence 11 11 1112221 12 34788889999999999999987 689999999999999999999999
Q ss_pred HHHHhhcccccCcCCCCceEeCccccccc
Q 002161 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (958)
Q Consensus 598 ~al~~i~~~~~~~~~~~~~l~GEgWd~ge 626 (958)
..|+.++.+. -..++.-|++-|.-+.|.
T Consensus 230 ~~l~nLnsD~-f~s~srpfi~qEVID~Gg 257 (504)
T KOG2212|consen 230 DKLHNLNSDW-FPSGSKPFIYQEVIDLGG 257 (504)
T ss_pred HHHhhccccc-ccCCCCceehhhhhhcCC
Confidence 9999998652 223577899999888764
No 41
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.64 E-value=8.5e-16 Score=144.40 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEE-ecCCCcc--c
Q 002161 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ--I 284 (958)
Q Consensus 209 ~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~-~~p~~g~--~ 284 (958)
+|||++.+++++|+||||+|++|+|++|+++.. ...++| +..+|+|++.+++...|.+|+|+|+. ++|..+. .
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~~~~~~ 77 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDGS---ETRLPLTEEYGGVWHGFLPGIKAGQRYGFRVHGPYDPERGLRFN 77 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCCC---EEEEEcccccCCEEEEEECCCCCCCEEEEEECCccCcccCcccC
Confidence 699999999999999999999999999975431 356889 56789999999999999999999986 5555443 2
Q ss_pred ceeeecCcceeecccCCC
Q 002161 285 EKCYANDPYARGLSSDGR 302 (958)
Q Consensus 285 e~~~v~DPYA~~ls~ng~ 302 (958)
...+++||||++++..+.
T Consensus 78 ~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 78 PAKLLLDPYARALDGPLA 95 (103)
T ss_pred CCeEEecCCcceEcCCcc
Confidence 457899999999976543
No 42
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.63 E-value=2e-15 Score=174.08 Aligned_cols=338 Identities=19% Similarity=0.251 Sum_probs=199.0
Q ss_pred CCCccEEeCCe-EEEEEEcCCCC-------eEEEEEecCCCCCCC----------ceEEeeccCCCEEEEEeCC------
Q 002161 208 GPLGALYAEET-VSLYLWAPTAQ-------SVSACIYRDPLGGNP----------LEVVQLKENDGVWSIKGPK------ 263 (958)
Q Consensus 208 ~~LGa~~~~~~-v~F~lWAPtA~-------~V~L~ly~~~~~~~~----------~~~~~M~~~~GvWsv~~~~------ 263 (958)
..|||++.++| +.|-.|.|.-. .|.|.+|..-+..++ ...+++...+...+..+.+
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgVv~GlraGtr 105 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGVVAGLRAGTR 105 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeehhhccCCCCc
Confidence 46999999766 89999999754 899999975433221 1234454444443333333
Q ss_pred CCCCcEEEEEEEEecCCCcccceeeecCcceeecccCCC--ceEEeeCCCCCCCCc--c-cccc-----ccCCCCCCCCC
Q 002161 264 SWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR--RTLLVNLDSDTLKPE--G-WDKL-----VYEKPDILSFS 333 (958)
Q Consensus 264 ~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~--~s~vvDl~~~~~~P~--~-W~~~-----~~~~P~~~~~~ 333 (958)
...|.+|..+....+ + +...+.||.|.|+.- |. +..+.|+..-.-+-. + ++.. ....|.+. .
T Consensus 106 ~q~GsfYwLry~d~~---~--~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~--~ 177 (811)
T PF14872_consen 106 DQAGSFYWLRYRDQD---G--EVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVP--A 177 (811)
T ss_pred ccccceEEEEEccCC---C--CeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccC--C
Confidence 345778877764322 3 346789999998853 22 234556543100000 0 1110 01233332 3
Q ss_pred CceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHH------HH--HcCCceEEeCccccCCCCCcccccccc
Q 002161 334 DISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK------LS--NAGLTHVHLLPTFQFAGVDDRKENWKS 405 (958)
Q Consensus 334 d~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~------L~--~lGvT~I~LlPvfd~~~i~e~~~~~~~ 405 (958)
...|-++||+.-|.. ||+.|+|+.-..+-++|.. .. =.|+.+|+||||=..-. .+..
T Consensus 178 P~nILQiHv~TAsp~---------GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtie---yr~e--- 242 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---------GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIE---YRAE--- 242 (811)
T ss_pred CceeEEEecCCCCCC---------cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcce---eccc---
Confidence 478999999987653 9999998741111111100 00 14999999999954321 1100
Q ss_pred cCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCC-
Q 002161 406 VGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPN- 484 (958)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~- 484 (958)
.+.-..+|..-.. ++..+.....+-.+.+.....++..|.-|||||..-+ ||=+|||.
T Consensus 243 -----------~~~~h~Ff~~~~~------d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~----GsaAtNPal 301 (811)
T PF14872_consen 243 -----------NEPGHEFFSIRPE------DEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVIL----GSAATNPAL 301 (811)
T ss_pred -----------cCCCCceeeeccc------ccccccccccccccCceEEEEecCCCccccCcceeee----ccCCCCHHH
Confidence 0011111110000 0000000000000111122345667889999998765 67788875
Q ss_pred -CCchhHHHHHHHHHHhh---cCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHH
Q 002161 485 -GSCRTIEFRRMVQALNH---IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMV 560 (958)
Q Consensus 485 -g~~ri~Efr~mV~alH~---~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv 560 (958)
++.|-+|+-++|..||. ..|+||+|+||.|.- +..++-+.+.|+.-.| -.+.|+|..||+|
T Consensus 302 L~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHAD-------NQ~~~LLn~~flkGPn--------MYGQdlnhq~P~V 366 (811)
T PF14872_consen 302 LETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHAD-------NQALDLLNRRFLKGPN--------MYGQDLNHQNPVV 366 (811)
T ss_pred HhcCCcHHHHHHHHHHhcCCCCCeEEEEeeeccccc-------chhhHhhhhhhccCCc--------cccccccccChHH
Confidence 56789999999999994 689999999999983 4445555444543222 2356899999999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEecCCCC------------cHHHHHHHHHHHHhhcc
Q 002161 561 ERLIIDDLLCWAVNYKVDGFRFDLMGHI------------MKSTMMKAKHALHSLTK 605 (958)
Q Consensus 561 ~k~iiDsl~~W~~ey~IDGFRfDl~~~i------------~~~~~~~~~~al~~i~~ 605 (958)
|..+++.-+.=+ ++|+||.|+|-+... +.+.+.+.-+.+++|..
T Consensus 367 RAILLEmQRRK~-n~GaDGIRVDGgQDFk~fnplt~~ve~DD~YL~~M~dvvQ~I~~ 422 (811)
T PF14872_consen 367 RAILLEMQRRKI-NTGADGIRVDGGQDFKFFNPLTGRVEYDDAYLLAMSDVVQEIGG 422 (811)
T ss_pred HHHHHHHHHhhc-ccCCceeEecccccceeecccccccccchHHHHHHHHHHhhccc
Confidence 999999998866 699999999987432 33445555666666653
No 43
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.61 E-value=2.8e-15 Score=144.32 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=75.5
Q ss_pred ccEEeCCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEeec-c---CCCEEEEEeCCCCCCcEEEEEEE-EecCCCccc-
Q 002161 211 GALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-E---NDGVWSIKGPKSWEGCYYVYEVS-VYHPSALQI- 284 (958)
Q Consensus 211 Ga~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M~-~---~~GvWsv~~~~~~~G~~Y~y~v~-~~~p~~g~~- 284 (958)
||++.+++++|+||||+|++|+|+||+++.+..+...++|. . .+|+|++.+++.+.|.+|+|+|+ .++|..|..
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~~~ 80 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGHRF 80 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccccc
Confidence 89999999999999999999999999876533455678893 2 36999999999999999999998 345554432
Q ss_pred -ceeeecCcceeecccCCCce
Q 002161 285 -EKCYANDPYARGLSSDGRRT 304 (958)
Q Consensus 285 -e~~~v~DPYA~~ls~ng~~s 304 (958)
+..+++||||++++.+...+
T Consensus 81 ~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 81 DPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred CCCcEEECCCcCeEcCccccC
Confidence 34679999999998765443
No 44
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.48 E-value=1e-13 Score=125.86 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=67.3
Q ss_pred ccEEeC-CeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceee
Q 002161 211 GALYAE-ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (958)
Q Consensus 211 Ga~~~~-~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~ 288 (958)
||++.+ ++++|+||||+|++|+|++|+ . ..++| +..+|+|++++++. +|.+|.|+|+. ...
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~------~~~~m~~~~~G~W~~~v~~~-~g~~Y~y~v~~---------~~~ 63 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-G------EEIPMQRDGDGWFEAEVPGA-AGTRYRYRLDD---------GTP 63 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-C------CcccCccCCCcEEEEEeCCC-CCCeEEEEECC---------CcC
Confidence 788887 899999999999999999985 1 24678 67889999999999 99999999961 247
Q ss_pred ecCcceeec--ccCCCceEEeeC
Q 002161 289 ANDPYARGL--SSDGRRTLLVNL 309 (958)
Q Consensus 289 v~DPYA~~l--s~ng~~s~vvDl 309 (958)
++||||+.+ ..++ .|+|+|+
T Consensus 64 ~~DP~a~~~~~~~~~-~s~v~~~ 85 (85)
T cd02853 64 VPDPASRFQPEGVHG-PSQVVDP 85 (85)
T ss_pred CCCCccccCCCCCCC-CeEeeCc
Confidence 899999986 3455 5888763
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.47 E-value=5.5e-14 Score=171.74 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=72.2
Q ss_pred ccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchh
Q 002161 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 437 (958)
++|.+++ +.|+||++||||||||+|||+...
T Consensus 17 ~tf~~~~-------~~l~YL~~LGis~IyLsPi~~a~~------------------------------------------ 47 (879)
T PRK14511 17 FTFDDAA-------ELVPYFADLGVSHLYLSPILAARP------------------------------------------ 47 (879)
T ss_pred CCHHHHH-------HHhHHHHHcCCCEEEECcCccCCC------------------------------------------
Confidence 6777665 559999999999999999997631
Q ss_pred hhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccC
Q 002161 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (958)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~ 517 (958)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+||++.
T Consensus 48 ------------------------gs~hGYdv~D~~~idp~lGt~-------e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 48 ------------------------GSTHGYDVVDHTRINPELGGE-------EGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred ------------------------CCCCCCCcCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 358999999999999999994 5899999999999999999999999997
Q ss_pred CC
Q 002161 518 SG 519 (958)
Q Consensus 518 ~g 519 (958)
.+
T Consensus 97 ~~ 98 (879)
T PRK14511 97 GG 98 (879)
T ss_pred cC
Confidence 65
No 46
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.45 E-value=3.2e-13 Score=121.77 Aligned_cols=79 Identities=38% Similarity=0.685 Sum_probs=62.2
Q ss_pred CCccEEeCC--eEEEEEEcCCCCeEEEEEecCCCCCCCceEEeec--cCCCEEEEEeCCC-CCC-cEEEEEEEEecCCCc
Q 002161 209 PLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK--ENDGVWSIKGPKS-WEG-CYYVYEVSVYHPSAL 282 (958)
Q Consensus 209 ~LGa~~~~~--~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M~--~~~GvWsv~~~~~-~~G-~~Y~y~v~~~~p~~g 282 (958)
||||++.++ +++|+||||+|++|+|+++.+. . .+.+.++|. ..+|+|+++++.. ..| .+|+|+|+... |
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~-~-~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~---g 75 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG-S-WPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD---G 75 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT-S-SEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT---T
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee-c-CCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC---C
Confidence 799999986 9999999999999999999876 2 345788884 6899999999955 446 69999998643 2
Q ss_pred ccceeeecCcce
Q 002161 283 QIEKCYANDPYA 294 (958)
Q Consensus 283 ~~e~~~v~DPYA 294 (958)
+...+.||||
T Consensus 76 --~~~~~~DPYA 85 (85)
T PF02922_consen 76 --ETPEVVDPYA 85 (85)
T ss_dssp --EEEEET-TT-
T ss_pred --cEEEEeCCCC
Confidence 4678999997
No 47
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.39 E-value=2.7e-13 Score=174.44 Aligned_cols=80 Identities=26% Similarity=0.320 Sum_probs=70.7
Q ss_pred ccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchh
Q 002161 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (958)
Q Consensus 358 Gty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 437 (958)
++|.+++ ++|+||++||||||||+|||+...
T Consensus 755 ~tf~~~~-------~~l~Yl~~LGv~~i~lsPi~~a~~------------------------------------------ 785 (1693)
T PRK14507 755 FTFADAE-------AILPYLAALGISHVYASPILKARP------------------------------------------ 785 (1693)
T ss_pred CCHHHHH-------HHhHHHHHcCCCEEEECCCcCCCC------------------------------------------
Confidence 6777664 569999999999999999997532
Q ss_pred hhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccC
Q 002161 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (958)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~ 517 (958)
+.+||||+.+|+.+++.||+ .++|++||++||++||+||||+|+||++.
T Consensus 786 ------------------------gs~hGYdv~D~~~idp~lG~-------~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 786 ------------------------GSTHGYDIVDHSQINPEIGG-------EEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred ------------------------CCCCCCCCCCCCccCcccCC-------HHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 25899999999999999999 45899999999999999999999999983
No 48
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.18 E-value=1e-10 Score=109.60 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=62.4
Q ss_pred eCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceEEee-ccCCCEEEEEeCCC-------CCCcEEEEEEEEecCCCcccc
Q 002161 215 AEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKS-------WEGCYYVYEVSVYHPSALQIE 285 (958)
Q Consensus 215 ~~~~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~-------~~G~~Y~y~v~~~~p~~g~~e 285 (958)
.+++++|+||||.|++|+|+ -|++|+. ..++| +...|+|+++++++ .+|.+|+|+|.... | +
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~----~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~---G--~ 73 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDR----NAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS---G--E 73 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCC----cCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCC---C--C
Confidence 35789999999999999999 5776643 34678 56789999999985 58999999998622 3 4
Q ss_pred eeeecCcceeecccCC
Q 002161 286 KCYANDPYARGLSSDG 301 (958)
Q Consensus 286 ~~~v~DPYA~~ls~ng 301 (958)
..++.||||+.+..+.
T Consensus 74 ~~~~~DPyA~~~~~~~ 89 (99)
T cd02854 74 WIDRIPAWIKYVTQDK 89 (99)
T ss_pred EEEEcCcceeEEEeCC
Confidence 5789999999987543
No 49
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.15 E-value=2.5e-10 Score=106.82 Aligned_cols=85 Identities=29% Similarity=0.357 Sum_probs=66.3
Q ss_pred CCccEEeC----CeEEEEEEcCCCCeEEEEE-ecCCCCCCCceEEee-c-cCCCEEEEEeCCCCCCcEEEEEEEEecCCC
Q 002161 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-K-ENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (958)
Q Consensus 209 ~LGa~~~~----~~v~F~lWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~-~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~ 281 (958)
.||+++.+ ++++|+||+|+|++|+|++ |+.+.. ..++| + ...|+|++.++....|.+|+|+|+...
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~----~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~--- 81 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRRRGDSGVWELFIPGLGEGELYKYEILGAD--- 81 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCC----cceecEECCCCCEEEEEECCCCCCCEEEEEEECCC---
Confidence 59999988 8999999999999999997 544432 23567 3 348999999998888899999997521
Q ss_pred cccceeeecCcceeecccCCC
Q 002161 282 LQIEKCYANDPYARGLSSDGR 302 (958)
Q Consensus 282 g~~e~~~v~DPYA~~ls~ng~ 302 (958)
+ ....+.||||+.++.+..
T Consensus 82 g--~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 82 G--HLPLKADPYAFYSELRPG 100 (106)
T ss_pred C--CEEEeeCCCceeeEeCCC
Confidence 2 234689999999876543
No 50
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.05 E-value=1.8e-10 Score=145.07 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=75.1
Q ss_pred CccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccch
Q 002161 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (958)
Q Consensus 357 rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 436 (958)
-|+|.+. .+||++|+++|+|.|||+||++...
T Consensus 128 mG~~~~w-------~~~L~~ik~lGyN~IhftPI~~~G~----------------------------------------- 159 (1464)
T TIGR01531 128 LGPLSEW-------EPRLRVAKEKGYNMIHFTPLQELGG----------------------------------------- 159 (1464)
T ss_pred cCCHHHH-------HHHHHHHHHcCCCEEEeCCCccCCC-----------------------------------------
Confidence 4888655 3689999999999999999997652
Q ss_pred hhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhc-CCEEEEEeeeccc
Q 002161 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHI-GLHVVLDVVYNHL 515 (958)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~-Gi~VIlDVVyNHt 515 (958)
.|+.|+..+|+.+++.|+.... ..++|++||+++|+. ||+||+|+|+|||
T Consensus 160 --------------------------SnS~Ysi~Dyl~idP~~~~~~~---~~~d~~~lV~~~h~~~Gm~~ilDvV~NHT 210 (1464)
T TIGR01531 160 --------------------------SNSCYSLYDQLQLNQHFKSQKD---GKNDVQALVEKLHRDWNVLSITDIVFNHT 210 (1464)
T ss_pred --------------------------CCCCccccchhhcChhhcccCC---cHHHHHHHHHHHHHhcCCEEEEEeeeccc
Confidence 4788999999999999985211 246899999999997 9999999999999
Q ss_pred cCCCCCC
Q 002161 516 QGSGPFD 522 (958)
Q Consensus 516 ~~~g~~~ 522 (958)
+.+++|.
T Consensus 211 a~ds~Wl 217 (1464)
T TIGR01531 211 ANNSPWL 217 (1464)
T ss_pred ccCCHHH
Confidence 9877664
No 51
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=4.7e-10 Score=132.50 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=67.9
Q ss_pred hhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHH
Q 002161 370 GVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTE 449 (958)
Q Consensus 370 ~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~ 449 (958)
...-|+||++|||.|+|+.|||....
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~p------------------------------------------------------ 46 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTARP------------------------------------------------------ 46 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcCC------------------------------------------------------
Confidence 35668999999999999999996532
Q ss_pred HHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCC
Q 002161 450 QQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (958)
Q Consensus 450 ~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~ 518 (958)
+..||||.+++..+++..|..+ -|+.||+++|++||.+|+|+|.||++.+
T Consensus 47 ------------GStHGYDVvD~t~InPeLGG~e-------gl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 47 ------------GSTHGYDVVDPTEINPELGGEE-------GLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ------------CCCCCccCCCccccChhhcChH-------HHHHHHHHHHhcCCceEEEecccchhcc
Confidence 4689999999999999999954 5999999999999999999999999976
No 52
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.84 E-value=1.3e-08 Score=92.82 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=53.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccceeeecCcce
Q 002161 216 EETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYA 294 (958)
Q Consensus 216 ~~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e~~~v~DPYA 294 (958)
++.++|+||||+|++|+|.++.+. ...++| +...|+|+++++ .+.+.+|+|++.+. | ..+.||+|
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~-----~~~~~m~~~~~G~W~~~v~-~l~~g~Y~Y~~~vd----g----~~~~DP~s 70 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGG-----AGSHPMTKDEAGVWSVTTG-PLAPGIYTYSFLVD----G----VRVIDPSN 70 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCC-----CccEeCeECCCeEEEEEEC-CCCCcEEEEEEEEC----C----eEecCCCC
Confidence 357999999999999999986531 235788 567899999995 46677777777653 2 46899999
Q ss_pred eecc
Q 002161 295 RGLS 298 (958)
Q Consensus 295 ~~ls 298 (958)
+...
T Consensus 71 ~~~~ 74 (85)
T cd02858 71 PTTK 74 (85)
T ss_pred Ccee
Confidence 8654
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.37 E-value=6e-07 Score=111.13 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCccEEeCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceEEeec--cCCCEEEEEeCCCCCCcEEEEEEEEecCCCcccc
Q 002161 209 PLGALYAEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIE 285 (958)
Q Consensus 209 ~LGa~~~~~~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvWsv~~~~~~~G~~Y~y~v~~~~p~~g~~e 285 (958)
.||||....|++|+||||+|++|+|+ .|+. ....+|. ...|+|++.+| ...|..|+|+|.. + |.
T Consensus 20 ~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~------~~~~~m~~~~~~G~w~~~ip-~~~g~~YKy~i~~-~---g~-- 86 (726)
T PRK05402 20 VLGPHPTGAGLVVRALLPGAEEVWVILPGGG------RKLAELERLHPRGLFAGVLP-RKGPFDYRLRVTW-G---GG-- 86 (726)
T ss_pred hcCCCCCCCcEEEEEECCCCeEEEEEeecCC------CccccceEcCCCceEEEEec-CCCCCCeEEEEEe-C---Cc--
Confidence 69999998899999999999999998 4553 1356783 47899999999 9999999999974 2 43
Q ss_pred eeeecCcceeec
Q 002161 286 KCYANDPYARGL 297 (958)
Q Consensus 286 ~~~v~DPYA~~l 297 (958)
.....||||...
T Consensus 87 ~~~k~DPyaf~~ 98 (726)
T PRK05402 87 EQLIDDPYRFGP 98 (726)
T ss_pred eeEeccccccCC
Confidence 467999999854
No 54
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.18 E-value=5.8e-06 Score=73.01 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=46.6
Q ss_pred CeEEEEEEcCCCCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCCCC-CCcEEEEEEEE
Q 002161 217 ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSW-EGCYYVYEVSV 276 (958)
Q Consensus 217 ~~v~F~lWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~-~G~~Y~y~v~~ 276 (958)
++++|+||||.|++|+|+++.+.. ...++| +...|+|++.++... .+.+|+|+|..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~----~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD----TQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC----CCcccCEECCCceEEEEEcCCCCCCeEEEEEEeC
Confidence 579999999999999999876431 135778 566799999999888 89999999974
No 55
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.07 E-value=8e-06 Score=94.18 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=68.3
Q ss_pred hhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCcccccCCCCcccceehccCccccchhhhhhcCCCCCHHH
Q 002161 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (958)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~ 450 (958)
.+||+..+++|+|.||+.|+.+...
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~------------------------------------------------------- 49 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGE------------------------------------------------------- 49 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCC-------------------------------------------------------
Confidence 4789999999999999999987753
Q ss_pred HHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHh-hcCCEEEEEeeeccccCCCCCC
Q 002161 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALN-HIGLHVVLDVVYNHLQGSGPFD 522 (958)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH-~~Gi~VIlDVVyNHt~~~g~~~ 522 (958)
.+--|...+....++.+..+ ....+.+++++||+.++ +.||.+|.|||+|||+...+|-
T Consensus 50 ------------S~S~YSI~Dql~~~~~~~~~-~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~Wl 109 (423)
T PF14701_consen 50 ------------SNSPYSIYDQLKFDPDFFPP-GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPWL 109 (423)
T ss_pred ------------CCCCccccchhhcChhhcCC-CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChHH
Confidence 23347788888888887664 22356789999999996 7899999999999999766654
No 56
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.04 E-value=1.5e-05 Score=72.02 Aligned_cols=68 Identities=25% Similarity=0.383 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCCeEEEE-EecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCc-EEEEEEEEecCCCcccceeeecCcce
Q 002161 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVSVYHPSALQIEKCYANDPYA 294 (958)
Q Consensus 218 ~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~-~Y~y~v~~~~p~~g~~e~~~v~DPYA 294 (958)
.++|++|||.|++|+|. .|+.|+ .++| +...|+|+++++ ...|. .|+|.|+ |. ..+.||.+
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~------~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~vd------g~---~~~~DP~~ 66 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN------AIPMEREGDGLWVVTVE-LRPGRYEYKFVVD------GE---WVIVDPNA 66 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC------cccCEECCCCcEEEEEe-CCCCcEEEEEEEC------CE---EeeCCCCC
Confidence 58999999999999998 677764 3678 445699999997 55677 5777664 21 23589999
Q ss_pred eecccCC
Q 002161 295 RGLSSDG 301 (958)
Q Consensus 295 ~~ls~ng 301 (958)
.....++
T Consensus 67 ~~~~~~~ 73 (82)
T cd02861 67 AAYVDDG 73 (82)
T ss_pred CceecCC
Confidence 8765554
No 57
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.79 E-value=0.00018 Score=71.18 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=63.5
Q ss_pred CCCccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCc-
Q 002161 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF- 543 (958)
Q Consensus 465 WGYdp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~- 543 (958)
|=|-|..-....+.+..| =|++||++||++||||+.=+-++ .. .. .-+-.|.|..+ +++|.
T Consensus 27 ~ayYPt~~~~~hp~L~~D--------llge~v~a~h~~Girv~ay~~~~-~d-------~~-~~~~HPeW~~~-~~~G~~ 88 (132)
T PF14871_consen 27 YAYYPTKVGPRHPGLKRD--------LLGEQVEACHERGIRVPAYFDFS-WD-------ED-AAERHPEWFVR-DADGRP 88 (132)
T ss_pred EEEccCCCCcCCCCCCcC--------HHHHHHHHHHHCCCEEEEEEeee-cC-------hH-HHHhCCceeeE-CCCCCC
Confidence 335555544444445432 59999999999999999655554 21 11 11234888876 44554
Q ss_pred --------cccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 002161 544 --------IEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (958)
Q Consensus 544 --------~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl 584 (958)
.....||.|. ..+++++..++--++.|.+|||=||.
T Consensus 89 ~~~~~~~~~~~~~~c~ns-----~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 89 MRGERFGYPGWYTCCLNS-----PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cCCCCcCCCCceecCCCc-----cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 1234577754 24478888889888899999999984
No 58
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.77 E-value=4.1e-05 Score=69.69 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEE
Q 002161 842 NFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFV 920 (958)
Q Consensus 842 ~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~ 920 (958)
+||+||+||+++|+|+.|+...+.-.. .. ...++++.+..+. +.++|++|.+++++++.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~--~~-----~~~l~~~~r~~~~-------------~~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVER--DA-----PDALLAFRRTGGG-------------ERLLVAFNLSDEPVTVP 59 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEE--EE-----ETTEEEEEEEETT-------------EEEEEEEE-SSS-EEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEe--cC-----CCEEEEEEEEcCC-------------ceEEEEEecCCCcEEcc
Confidence 699999999999999999865433111 11 2457777776432 68999999999999997
No 59
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.75 E-value=0.00017 Score=81.11 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCcccc--C-CCcCCCCCCCHHHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH--S-TCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~--s-tc~~d~a~e~~mv~k~iiDsl 568 (958)
|+.||+++|++||+|.-=+.+...... .+-+-+..|.++...+.+..... + ....-+|+.+|+||++|++.+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v 146 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAPD-----VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV 146 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCCc-----hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH
Confidence 999999999999999987755543221 11122233544432222221111 1 111236999999999999999
Q ss_pred HHHHHhCCccEEEEe
Q 002161 569 LCWAVNYKVDGFRFD 583 (958)
Q Consensus 569 ~~W~~ey~IDGFRfD 583 (958)
+--++.|.|||..||
T Consensus 147 ~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 147 KEIVKNYDVDGIHLD 161 (311)
T ss_pred HHHHhcCCCCeEEec
Confidence 999999999999999
No 60
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=97.68 E-value=8.9e-05 Score=92.27 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=72.5
Q ss_pred hcCCCeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHH
Q 002161 760 VSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAA 839 (958)
Q Consensus 760 l~~~GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~ 839 (958)
+.+.|||.||||+|++...-.|+ |-..++||.... +. +.. +....+.....+....
T Consensus 711 lT~PGVPdIYqG~E~wd~slvDP------DNRRpvd~~~r~----------------~~-L~~-l~~~~~~~~~~dg~~k 766 (879)
T PRK14511 711 LTSPGVPDVYQGTELWDFSLVDP------DNRRPVDFAARA----------------AA-LAR-LDEGAELLPWDDGRIK 766 (879)
T ss_pred HCcCCCCcccCcccchhccCCCC------CCCCCCChHHHH----------------HH-Hhh-cccccccccCCcchHH
Confidence 44559999999999997644433 334567775311 00 000 0000000011122345
Q ss_pred HHHHHHHHHHHhcCccc-ccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCC---
Q 002161 840 LENFSDVLRIRYSSPLF-RLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT--- 915 (958)
Q Consensus 840 ~~~~k~Li~LRksspaf-rlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~--- 915 (958)
+.++++||+||+++|+| +.|++..+. . .|+ ....|++|.|..+. +.++||+|....
T Consensus 767 l~~~~~lL~lRr~~p~Lf~~G~y~pL~----~--~G~-~a~~v~AFaR~~~~-------------~~~vvvv~R~~~~l~ 826 (879)
T PRK14511 767 LLLIARALRLRRDRPELFAGGEYLPLE----V--SGP-HAGHVLAFARGGGG-------------GRALTVAPRLPAGLL 826 (879)
T ss_pred HHHHHHHHHHHHhCHHHhhCCceEEEE----e--cCC-CCCcEEEEEEecCC-------------ceEEEEecccccccc
Confidence 78899999999999988 568865432 1 222 23569999997643 679999988764
Q ss_pred ------cEEEECCC
Q 002161 916 ------EVSFVSPA 923 (958)
Q Consensus 916 ------~~~~~lp~ 923 (958)
..++.||.
T Consensus 827 ~~~~W~dt~v~LP~ 840 (879)
T PRK14511 827 GAGGWGDTRLVLPE 840 (879)
T ss_pred ccCCcCCeEEeCCC
Confidence 44666764
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.0092 Score=69.27 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCc-CC--CCCCCHHHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCM-NN--TASEHYMVERLIIDDL 568 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~-~d--~a~e~~mv~k~iiDsl 568 (958)
+..||+++|++||+|+-=+-+--++- ..|.+-+..|.+-....+...+..+... .+ +|+.||+|+++|.+.+
T Consensus 117 La~~I~~AHkr~l~v~aWf~~~~~a~-----~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv 191 (418)
T COG1649 117 LAFVIAEAHKRGLEVHAWFNPYRMAP-----PTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLV 191 (418)
T ss_pred HHHHHHHHHhcCCeeeechhhcccCC-----CCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHH
Confidence 89999999999999987655433321 1233333333332211111111111111 23 4899999999999999
Q ss_pred HHHHHhCCccEEEEecC
Q 002161 569 LCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 569 ~~W~~ey~IDGFRfDl~ 585 (958)
..-++.|.|||.-||--
T Consensus 192 ~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 192 VEVVRNYDVDGIQFDDY 208 (418)
T ss_pred HHHHhCCCCCceeccee
Confidence 99999999999999854
No 62
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.57 E-value=0.0064 Score=73.08 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeecccc
Q 002161 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (958)
Q Consensus 476 e~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~ 516 (958)
.-.||| .++||..|+|||+.||+||-|+|.+...
T Consensus 640 ptKYGs-------~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 640 PTKYGS-------VEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -BTTB--------HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCCC-------HHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 346888 5789999999999999999999999875
No 63
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.16 E-value=0.021 Score=65.15 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccC-CCCCCC--CCccCCCCCcceEecCCCCccc-----cCCCcCCCCCCCHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQG-SGPFDD--NSVLDKVVPGYYLRRNSDGFIE-----HSTCMNNTASEHYMVERL 563 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~-~g~~~~--~svldk~vP~YY~r~~~~G~~~-----~stc~~d~a~e~~mv~k~ 563 (958)
.++||+.||++|++|++=|.. |... .++... ........-+|+.+ +.+|... +...+.-+++.||.+++.
T Consensus 87 p~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk-~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 87 PKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQ-RGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred HHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEE-cCCCCccccccccCCCceeecCCCHHHHHH
Confidence 899999999999999985443 2221 111000 00001111256654 3344321 122344579999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCC
Q 002161 564 IIDDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 564 iiDsl~~W~~ey~IDGFRfDl~~ 586 (958)
..+-++.+++++|||||-+|..-
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999989999999999653
No 64
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.0097 Score=72.99 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=35.5
Q ss_pred cCCCcCCCCCCCCCCCchhHHHHHHHHHHh-hcCCEEEEEeeeccccCCCCC
Q 002161 471 LWGVPKGSYASNPNGSCRTIEFRRMVQALN-HIGLHVVLDVVYNHLQGSGPF 521 (958)
Q Consensus 471 ~y~ape~sygt~~~g~~ri~Efr~mV~alH-~~Gi~VIlDVVyNHt~~~g~~ 521 (958)
+|+.|++.|+- ++.++||+.|| +-+|--|-|||||||+...+|
T Consensus 185 ~~~~~~~k~s~--------eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 185 DFSRPNRKYSF--------EDVGQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred hhhccCCCCCH--------HHHHHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 44577887764 58999999999 569999999999999976554
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.61 E-value=0.02 Score=64.67 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=60.5
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCccc----cCCCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIE----HSTCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~----~stc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++||+-+. .|...+.+. .++. ..-+|+.+. .+|... +.+-+.-+++.||.+++...+
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~----~y~~~~~~g~~vk~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 73 LDELIEELKARGIRVLTYIN-PYLADDGPL----YYEEAKDAGYLVKD-ADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHHHHHHHCCCEEEEEec-CceecCCch----hHHHHHHCCeEEEC-CCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 79999999999999999554 554332110 0111 113555543 333311 112345579999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCC
Q 002161 567 DLLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~~ 587 (958)
-++....++|||||=+|.-..
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCC
Confidence 999887889999999996543
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.44 E-value=0.084 Score=63.87 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCC-cccc---C-CC---cCCCCCCCHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDG-FIEH---S-TC---MNNTASEHYM 559 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G-~~~~---s-tc---~~d~a~e~~m 559 (958)
...-.|+.|+++|+.||+++. ||=..+.-. ...-+.+.|.|+...+..+ .... . .. .--.|+.|+.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~---Ynmiyaa~~---~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~ 241 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMA---YNMIYAANN---NYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPE 241 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEE---EEESSEEET---T--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HH
T ss_pred hHHHHHHHHHHHHHcCcceeh---hHhhhcccc---CcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHH
Confidence 356799999999999999986 443332111 1112445565554444433 1110 0 00 2235899999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCC
Q 002161 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (958)
Q Consensus 560 v~k~iiDsl~~W~~ey~IDGFRfDl~~~i 588 (958)
-+++|+..+...++++|+|||.+|.+|..
T Consensus 242 WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 242 WQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999999999999854
No 67
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.26 E-value=0.039 Score=61.98 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCc--c--c-cCCCcCCCCCCCHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGF--I--E-HSTCMNNTASEHYMVERLI 564 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~--~--~-~stc~~d~a~e~~mv~k~i 564 (958)
++++||+.+|++|+++++=+-. +.....+ .++. ...+|+.+. .+|. + . ....+.-++..||.+++++
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~-----~~~e~~~~g~~vk~-~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~ 143 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSE-----NFREAVEKGYLVSE-PSGDIPALTRWWNGTAAVLDFTNPEAVDWF 143 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCH-----HHHhhhhCCeEEEC-CCCCCCcccceecCCcceEeCCCHHHHHHH
Confidence 3899999999999999998776 3332111 1221 224666543 3331 1 1 1123455799999999999
Q ss_pred HHHHHHHHHhCCccEEEEecCC
Q 002161 565 IDDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 565 iDsl~~W~~ey~IDGFRfDl~~ 586 (958)
.+-++..+.++|||||-+|...
T Consensus 144 ~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 144 LSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHHHHhCCcEEEeCCCC
Confidence 9999999989999999999764
No 68
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=95.01 E-value=0.051 Score=60.95 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCccccCC----CcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHST----CMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~~st----c~~d~a~e~~mv~k~iiD 566 (958)
.++||++||++|++|++-+.. |.+.+.+ .++. ..++|+.+. .+|...... -+.-+++.||++++++.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~-----~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 140 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP-----LFKEAAEKGYLVKK-PDGSVWQWDLWQPGMGIIDFTNPDACKWYKD 140 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch-----hHHHHHHCCeEEEC-CCCCeeeecccCCCcccccCCCHHHHHHHHH
Confidence 799999999999999998874 4433211 1222 225677653 334322111 123468999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCCCcH
Q 002161 567 DLLCWAVNYKVDGFRFDLMGHIMK 590 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~~i~~ 590 (958)
-++.+.+ +|||||-+|....+|.
T Consensus 141 ~~~~~~~-~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 141 KLKPLLD-MGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHHHHH-hCCcEEecCCCCCCCc
Confidence 9998775 8999999998766554
No 69
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=94.80 E-value=0.4 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHhhcCCEEEEEeeec
Q 002161 487 CRTIEFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 487 ~ri~Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
..++.|+++|++|+++||+||+|+--.
T Consensus 59 ~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 59 TYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 457889999999999999999986543
No 70
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.59 E-value=0.068 Score=60.38 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCC-CCcceEecCCCCcc-cc----CCCcCCCCCCCHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-EH----STCMNNTASEHYMVERLII 565 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~-vP~YY~r~~~~G~~-~~----stc~~d~a~e~~mv~k~ii 565 (958)
.++||+.||++|++|++-+.. +.....+ .++.. .-+|+.+.. +|.. .. ...+.-++..||..+++..
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P-~i~~~~~-----~y~e~~~~g~~v~~~-~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKP-GLLQDHP-----RYKELKEAGAFIKPP-DGREPSIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCC-cccCCCH-----HHHHHHHCCcEEEcC-CCCCcceecccCCCeEeecCCChHHHHHHH
Confidence 789999999999999985543 3322111 11111 125665432 2221 11 1112246889999999999
Q ss_pred HHHHHHHHhCCccEEEEecC
Q 002161 566 DDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDl~ 585 (958)
.-++.-+.+.|||||=+|..
T Consensus 148 ~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 148 EGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred HHHHHHHhcCCCcEEEecCC
Confidence 98977778899999999954
No 71
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.57 E-value=0.12 Score=58.51 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCc-cccCCCcCCCCCCCHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-IEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~-~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
|.++++|++.||++||.+|-=+|. +....+-+..|.|..+ ..+|. +.+.....=+|+-++++++|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---------FkD~~la~~~pe~av~-~~~G~~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---------FKDPVLAEAHPEWAVK-TKDGSVWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---------ecChHHhhhChhhEEE-CCCCCcccCCCCCccCCCCCHHHHHHHHHH
Confidence 578999999999999999999887 2344555556877763 34443 343334445689999999999999
Q ss_pred HHHHHHhCCccEEEEecCCC
Q 002161 568 LLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 568 l~~W~~ey~IDGFRfDl~~~ 587 (958)
.+..+ ..|+|..-||=+-.
T Consensus 130 A~Eaa-~~GFdEIqfDYIRF 148 (316)
T PF13200_consen 130 AKEAA-KLGFDEIQFDYIRF 148 (316)
T ss_pred HHHHH-HcCCCEEEeeeeec
Confidence 99977 57999999997743
No 72
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.28 E-value=0.095 Score=59.28 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCC-CCcceEecCCCCcc-cc--CCCcCCCCCCCHHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-EH--STCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~-vP~YY~r~~~~G~~-~~--stc~~d~a~e~~mv~k~iiDs 567 (958)
.++||+.||++|++||+-+. .+.....+ .++.. .-+|+.+.. +|.. .. .+-+.-+++.||..++...+-
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~-----~y~e~~~~g~~v~~~-~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE-----NYKEMDEKGYLIKTD-RGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh-----hHHHHHHCCEEEEcC-CCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 78999999999999999553 34432111 11111 125665533 3321 11 111345689999999998887
Q ss_pred HHHHHHhCCccEEEEecCC
Q 002161 568 LLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 568 l~~W~~ey~IDGFRfDl~~ 586 (958)
++.-+.++|||||=+|.-.
T Consensus 141 ~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 141 LKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHhhcCCCcEEEecCCC
Confidence 7766778999999999874
No 73
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=93.96 E-value=0.11 Score=58.70 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCcc-CCCCCcceEecCCCCccc--cCCC--cCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVVPGYYLRRNSDGFIE--HSTC--MNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svl-dk~vP~YY~r~~~~G~~~--~stc--~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++|++=+.. |...+.. ...+ .....+||.+. .+|... ...+ +.-.++.||..++...+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~v~~-~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~ 140 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDP-GIRVDQN---YSPFLSGMDKGKFCEI-ESGELFVGKMWPGTTVYPDFTNPDTREWWAG 140 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeec-cccCCCC---ChHHHHHHHCCEEEEC-CCCCeEEEeecCCCccccCCCChHHHHHHHH
Confidence 789999999999999986543 3322110 1111 11223666543 333311 1111 22368999999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 002161 567 DLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~ 586 (958)
-++..+.++|||||=+|.-.
T Consensus 141 ~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 141 LFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHhhcCCCceEEeeCCC
Confidence 99988888999999999654
No 74
>PLN02960 alpha-amylase
Probab=93.75 E-value=0.061 Score=67.50 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCCccEEeC-CeEEEEEEcCCCCeEEEE-EecCCCCCCCc-eEEee-ccCCCEEEEEeCCC-CCC--------cEEEEEE
Q 002161 208 GPLGALYAE-ETVSLYLWAPTAQSVSAC-IYRDPLGGNPL-EVVQL-KENDGVWSIKGPKS-WEG--------CYYVYEV 274 (958)
Q Consensus 208 ~~LGa~~~~-~~v~F~lWAPtA~~V~L~-ly~~~~~~~~~-~~~~M-~~~~GvWsv~~~~~-~~G--------~~Y~y~v 274 (958)
..||+|... .+|.|++|||.|+.|+|+ .||.|+..+.. ++=-| +.+-|+|.|.++.. .+| +.|.|..
T Consensus 118 e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (897)
T PLN02960 118 ELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVD 197 (897)
T ss_pred HHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhcccc
Confidence 369999986 499999999999999999 89998763211 11123 56789999999843 333 2477755
Q ss_pred E
Q 002161 275 S 275 (958)
Q Consensus 275 ~ 275 (958)
+
T Consensus 198 ~ 198 (897)
T PLN02960 198 D 198 (897)
T ss_pred c
Confidence 4
No 75
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.56 E-value=0.21 Score=57.06 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCcccc----CCCcCCCCCCCHHHHHHHHHH
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~iiDs 567 (958)
++||+.||++|+||++=+.. |............++. ..-+||.+ +.+|.... .+.+.-.++.||.+++...+-
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P-~v~~~~~~~~~~~~~e~~~~g~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILDP-AISANEPTGSYPPYDRGLEMDVFIK-NDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeC-ccccCcCCCCCHHHHHHHHCCeEEE-CCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 89999999999999997543 3322100001112221 22367665 33443211 222344689999999999999
Q ss_pred HHHHHHhCCccEEEEecCC
Q 002161 568 LLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 568 l~~W~~ey~IDGFRfDl~~ 586 (958)
++..+.++|||||=+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9999988999999999654
No 76
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=93.38 E-value=0.28 Score=57.27 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCC--CCCCCHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNN--TASEHYMVERLIIDDL 568 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d--~a~e~~mv~k~iiDsl 568 (958)
-|+.|++.+|++||+.=|=+-+--++. .|-+-+..|+|..+.. .. ....+.+. ++..||+|++++.+.+
T Consensus 105 Gl~~l~~~i~~~Gmk~GlW~ePe~v~~------~S~l~~~hPdw~l~~~-~~--~~~~~r~~~vLD~~~pev~~~l~~~i 175 (394)
T PF02065_consen 105 GLKPLADYIHSLGMKFGLWFEPEMVSP------DSDLYREHPDWVLRDP-GR--PPTLGRNQYVLDLSNPEVRDYLFEVI 175 (394)
T ss_dssp HHHHHHHHHHHTT-EEEEEEETTEEES------SSCHCCSSBGGBTCCT-TS--E-ECBTTBEEB-TTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeEEEEeccccccc------hhHHHHhCccceeecC-CC--CCcCcccceEEcCCCHHHHHHHHHHH
Confidence 399999999999999999886655532 3445555677764421 11 11122222 6889999999999999
Q ss_pred HHHHHhCCccEEEEecCCCC
Q 002161 569 LCWAVNYKVDGFRFDLMGHI 588 (958)
Q Consensus 569 ~~W~~ey~IDGFRfDl~~~i 588 (958)
...++++|||.|.+|....+
T Consensus 176 ~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 176 DRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp HHHHHHTT-SEEEEE-TS-T
T ss_pred HHHHHhcCCCEEEeccccCC
Confidence 99999999999999998654
No 77
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=93.05 E-value=0.27 Score=44.36 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred eEEEEEEcCCCCeEEEE-EecCCCCCCCceEEee-ccCCCEEEEEeCCCCCCc-EEEEEEEEecCCCcccceeeecCcce
Q 002161 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVSVYHPSALQIEKCYANDPYA 294 (958)
Q Consensus 218 ~v~F~lWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~G~-~Y~y~v~~~~p~~g~~e~~~v~DPYA 294 (958)
.|+|+..+ .|++|.|. -|+.|.. .++| +..+| |++.++ ...|. .|+|.|+ | ..+.||-.
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-----~~pm~~~~~~-~~~~~~-L~~g~y~YkF~Vd------g----~w~~d~~~ 64 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-----KIPLEKSGKG-FSATLR-LPPGKYQYKFIVD------G----EWRHSPDL 64 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-----cccceECCCC-cEEEEE-cCCCCEEEEEEEC------C----EEEeCCCC
Confidence 48999999 89999999 6777752 4788 44445 999986 44454 4777664 2 35677744
Q ss_pred e
Q 002161 295 R 295 (958)
Q Consensus 295 ~ 295 (958)
.
T Consensus 65 ~ 65 (79)
T cd02859 65 P 65 (79)
T ss_pred C
Confidence 3
No 78
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.62 E-value=0.22 Score=56.39 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCC-CCcceEecCCCCcccc----CCCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~-vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++|++=+.. +.....+ .++.. .-+|+.....+|.... .+.+.-++..||++++...+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P-~v~~~~~-----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEP-FVLKNSK-----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHD 145 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcC-cccCCch-----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHH
Confidence 689999999999999998753 3322111 11111 1255444334443211 11233458899999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 002161 567 DLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~ 586 (958)
.++.. .++|||||=+|.--
T Consensus 146 ~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 146 NYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHHh-hhCCccEEEecCCC
Confidence 99886 67899999999653
No 79
>PRK10426 alpha-glucosidase; Provisional
Probab=91.40 E-value=1 Score=55.72 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCcccc----CCCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++||+=+-. |..... ..++. ..-+|+.. +.+|.... ...|.-.+..||.+++...+
T Consensus 271 p~~mi~~L~~~G~k~v~~i~P-~v~~~~-----~~y~e~~~~gy~vk-~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~ 343 (635)
T PRK10426 271 LDSRIKQLNEEGIQFLGYINP-YLASDG-----DLCEEAAEKGYLAK-DADGGDYLVEFGEFYAGVVDLTNPEAYEWFKE 343 (635)
T ss_pred HHHHHHHHHHCCCEEEEEEcC-ccCCCC-----HHHHHHHHCCcEEE-CCCCCEEEeEecCCCceeecCCCHHHHHHHHH
Confidence 899999999999999988654 222211 11111 11356654 33443211 12244579999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCCCc
Q 002161 567 DLLCWAVNYKVDGFRFDLMGHIM 589 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~~i~ 589 (958)
-++..+.++|||||=.|.-..+|
T Consensus 344 ~~~~~~~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 344 VIKKNMIGLGCSGWMADFGEYLP 366 (635)
T ss_pred HHHHHHhhcCCCEEeeeCCCCCC
Confidence 98878888999999999655433
No 80
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=91.36 E-value=0.87 Score=43.07 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCccEEeCCeEEEEEEcCC--CCeEEEEEecCCCCCCCceEEeec--c---CCCEEEEEeCCCCCCcEEEEEEE
Q 002161 209 PLGALYAEETVSLYLWAPT--AQSVSACIYRDPLGGNPLEVVQLK--E---NDGVWSIKGPKSWEGCYYVYEVS 275 (958)
Q Consensus 209 ~LGa~~~~~~v~F~lWAPt--A~~V~L~ly~~~~~~~~~~~~~M~--~---~~GvWsv~~~~~~~G~~Y~y~v~ 275 (958)
|+|| +.++|||+++. +++|.|.+.++..... ...++|+ . ....|+++++.......|.|+|.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGE-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCCCCC-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 7787 78999999885 5788888876531111 2467782 2 23579999986554456888885
No 81
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=90.89 E-value=0.22 Score=58.53 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCC-CCcceEecCCCCccc----cCCCcCCCCCCCHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFIE----HSTCMNNTASEHYMVERLII 565 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~-vP~YY~r~~~~G~~~----~stc~~d~a~e~~mv~k~ii 565 (958)
++++|++.||++|++|++-+... ...... ....++.. ..+|+.+ +.+|... +...+.-+++.|+.++++..
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~--~~~~~~~~~~~~~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 159 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP--DYENYDEAKEKGYLVK-NPDGSPYIGRVWPGKGGFIDFTNPEARDWWK 159 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT--B-HHHHHHHHTT-BEB-CTTSSB-EEEETTEEEEEB-TTSHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC--cchhhhhHhhcCceee-cccCCcccccccCCcccccCCCChhHHHHHH
Confidence 48999999999999999988774 332211 00111111 1356654 3444211 11123446899999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCC
Q 002161 566 DDLLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDl~~~ 587 (958)
+-++..+..+|||||-+|....
T Consensus 160 ~~~~~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 160 EQLKELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp HHHHHHHTTST-SEEEEESTTT
T ss_pred HHHHHHHhccCCceEEeecCCc
Confidence 9999999989999999999543
No 82
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=89.90 E-value=1.8 Score=47.11 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHH
Q 002161 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~ 569 (958)
++++++|+.+|++|+||++=+-.+|.... + ....++.-++-+.++++
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------------~------------------~~~~~~~~~~~fa~~l~ 97 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG---------------F------------------ANNLSDAAAKAYAKAIV 97 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC---------------c------------------cccCCHHHHHHHHHHHH
Confidence 57899999999999999999877665310 0 01123345667778888
Q ss_pred HHHHhCCccEEEEecCC
Q 002161 570 CWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 570 ~W~~ey~IDGFRfDl~~ 586 (958)
.++++||+||+-+|.-.
T Consensus 98 ~~v~~yglDGiDiD~E~ 114 (255)
T cd06542 98 DTVDKYGLDGVDFDDEY 114 (255)
T ss_pred HHHHHhCCCceEEeeee
Confidence 89999999999999754
No 83
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.57 E-value=1.1 Score=51.66 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHH
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~ 572 (958)
.+++..+|++|++|++..-+. . ....++..|+-++++++.++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~----------~----------------------------~~l~~~~~R~~fi~siv~~~ 108 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP----------L----------------------------EQISNPTYRTQWIQQKVELA 108 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC----------H----------------------------HHcCCHHHHHHHHHHHHHHH
Confidence 489999999999999751100 0 01346778899999999999
Q ss_pred HhCCccEEEEecCCC
Q 002161 573 VNYKVDGFRFDLMGH 587 (958)
Q Consensus 573 ~ey~IDGFRfDl~~~ 587 (958)
++|++||+-+|--.-
T Consensus 109 ~~~gfDGIdIDwE~p 123 (358)
T cd02875 109 KSQFMDGINIDIEQP 123 (358)
T ss_pred HHhCCCeEEEcccCC
Confidence 999999999997643
No 84
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=89.39 E-value=0.52 Score=52.75 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
+.++||+.||++|++||+-|........+ ...+++ +.+ ....... ...+.-.++.||..++...+.++.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~----~~~y~~-----~~~-~~~~~~~-~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAH----EDQYPE-----MAK-ALGVDPA-TEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCC----cHHHHH-----HHH-hcCCCcc-cCCeEEecCCCHHHHHHHHHHHHH
Confidence 37999999999999999888653211100 000110 000 0000000 011124578899999888777777
Q ss_pred HHHhCCccEEEEec
Q 002161 571 WAVNYKVDGFRFDL 584 (958)
Q Consensus 571 W~~ey~IDGFRfDl 584 (958)
-+.++|||||=.|.
T Consensus 144 ~~~~~Gidg~W~D~ 157 (292)
T cd06595 144 PLEKQGVDFWWLDW 157 (292)
T ss_pred HHHhcCCcEEEecC
Confidence 77789999999995
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=89.32 E-value=2.4 Score=52.79 Aligned_cols=34 Identities=15% Similarity=-0.120 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 002161 553 TASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 553 ~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~ 586 (958)
+++-+|++++.|.+...-.++.|.|||.-||-=.
T Consensus 435 l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~ 468 (671)
T PRK14582 435 LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDA 468 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccc
Confidence 6788999999999999999999999999997543
No 86
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=88.92 E-value=2.5 Score=47.78 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHH
Q 002161 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~ 569 (958)
.++++-|+.||++|++|++=+ .|. . |.. ...++.-++.+++++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi-------GG~-~-------------------~~~---------~~~~~~~~~~fa~sl~ 103 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI-------GGA-N-------------------GHV---------DLNHTAQEDNFVDSIV 103 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-------eCC-C-------------------Ccc---------ccCCHHHHHHHHHHHH
Confidence 468999999999999999865 121 1 000 1224456788999999
Q ss_pred HHHHhCCccEEEEecCCCCcH----HHHHHHHHHHHhhc
Q 002161 570 CWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLT 604 (958)
Q Consensus 570 ~W~~ey~IDGFRfDl~~~i~~----~~~~~~~~al~~i~ 604 (958)
.++++|++||+-||.-.-... .........|+++.
T Consensus 104 ~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr 142 (312)
T cd02871 104 AIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLK 142 (312)
T ss_pred HHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999764322 23344455555554
No 87
>PRK10658 putative alpha-glucosidase; Provisional
Probab=88.66 E-value=0.78 Score=57.08 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCccc----cCCCcCCCCCCCHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIE----HSTCMNNTASEHYMVERLII 565 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~----~stc~~d~a~e~~mv~k~ii 565 (958)
+.++||+.||++|++|++=+.. +..... ..++. ..-+|+.+ +.+|... +...+.-.++.||.+++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s-----~~f~e~~~~gy~vk-~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKS-----PLFKEGKEKGYLLK-RPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCc-----hHHHHHHHCCeEEE-CCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 3789999999999999987544 222111 11111 12367765 4455432 22334457999999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 002161 566 DDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDl~~ 586 (958)
+-++.++ ++|||||-.|...
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGE 418 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCc
Confidence 9999866 5899999999543
No 88
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=88.27 E-value=0.96 Score=51.64 Aligned_cols=89 Identities=17% Similarity=0.030 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCc-cc---cCCCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGF-IE---HSTCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~-~~---~stc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++||+-+..--....+ ...++. ..-+|+.+. .+|. +. +...+.-++..||++++...+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~----~~~y~e~~~~g~~vk~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDG----YYVYKEAKDKGYLVKN-SDGGDFEGWCWPGSSSWPDFLNPEVRDWWAS 140 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCC----CHHHHHHHHCCeEEEC-CCCCEEEEEECCCCcCCccCCChhHHHHHHH
Confidence 7999999999999999987542211110 011111 113677653 3332 11 122344579999999999999
Q ss_pred HHHHHHH--hCCccEEEEecC
Q 002161 567 DLLCWAV--NYKVDGFRFDLM 585 (958)
Q Consensus 567 sl~~W~~--ey~IDGFRfDl~ 585 (958)
-++.... ..+||||=+|+-
T Consensus 141 ~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 141 LFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHHhhcccCCCceEEeccC
Confidence 9998776 468999999954
No 89
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=88.11 E-value=1.1 Score=55.78 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=62.4
Q ss_pred cccCCCCCCccEEeCCeEEEEEEcCCCCeEEEEEecCCCCC--CCceEEee-ccCCCEEEEEeCCCCCCcE-------EE
Q 002161 202 ELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGG--NPLEVVQL-KENDGVWSIKGPKSWEGCY-------YV 271 (958)
Q Consensus 202 ~~y~~~~~LGa~~~~~~v~F~lWAPtA~~V~L~ly~~~~~~--~~~~~~~M-~~~~GvWsv~~~~~~~G~~-------Y~ 271 (958)
++|.+++.+|+ .|++|+|.|+.+.+..|+..... +...++.| +-..|.|...+.+...... |.
T Consensus 59 ~~~~~~~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~ 131 (697)
T COG1523 59 RLYPYDGELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYG 131 (697)
T ss_pred cccccCCcccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCcccccccccc
Confidence 56888899988 89999999999999999854322 23356777 6788999999987764443 33
Q ss_pred EEEEEecCCCcccceeeecCcceeecccCCC
Q 002161 272 YEVSVYHPSALQIEKCYANDPYARGLSSDGR 302 (958)
Q Consensus 272 y~v~~~~p~~g~~e~~~v~DPYA~~ls~ng~ 302 (958)
|.++... ......|||++++..+..
T Consensus 132 ~~~~~~~------~~~~~~~~~~Ksvv~~~~ 156 (697)
T COG1523 132 YQITNLS------PDRDSADPYPKSVVIDPL 156 (697)
T ss_pred ccccccC------ccccccccCCceEEeccc
Confidence 4443221 124577889988876653
No 90
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=87.87 E-value=1.1 Score=51.01 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCccccC----CCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHS----TCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~~s----tc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|++|++=+.. |...+- ....++. ...+||.+. .+|..... .-+.-+++.||..+++..+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P-~v~~~~---~~~~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDP-GVKVDP---GYDVYEEGLENDYFVKD-PDGELYIGRVWPGLSAFPDFTNPKVREWWGS 140 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeC-ceeCCC---CChHHHHHHHCCeEEEC-CCCCEEEEEecCCCccccCCCChHHHHHHHH
Confidence 789999999999999976543 332110 0111111 123666553 34432111 1123368999999999999
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 002161 567 DLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~ 586 (958)
.++... ++|||||=+|...
T Consensus 141 ~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 141 LYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHHh-hCCCceEeecCCC
Confidence 888866 6899999999764
No 91
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=87.51 E-value=2.8 Score=45.76 Aligned_cols=64 Identities=19% Similarity=0.388 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
++..+++++|+.|++|++=| -++... .+. ....++..|+-+++++..
T Consensus 47 ~~~~~~~~~~~~~~kvl~si-gg~~~~----------------~~~----------------~~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISL-AGGSPP----------------EFT----------------AALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEE-cCCCCC----------------cch----------------hhhcCHHHHHHHHHHHHH
Confidence 68899999999999999854 232110 000 023467788889999999
Q ss_pred HHHhCCccEEEEecCCC
Q 002161 571 WAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 571 W~~ey~IDGFRfDl~~~ 587 (958)
++++|++||.-+|.-..
T Consensus 94 ~~~~~~~DGIdiDwE~~ 110 (253)
T cd06545 94 YVVSYNLDGIDVDLEGP 110 (253)
T ss_pred HHHHhCCCceeEEeecc
Confidence 99999999999998643
No 92
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=84.49 E-value=2.3 Score=48.88 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCCCC-ccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCC
Q 002161 463 YNWGY-NPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD 541 (958)
Q Consensus 463 ~nWGY-dp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~ 541 (958)
.+|-| |..-|+. +++.+-|. ...++++|++|++|+-=+.+.... + ...++.+.
T Consensus 28 ~~W~yvD~fvyws--h~~~~iPp--------~~~idaAHknGV~Vlgti~~e~~~--~----~~~~~~lL---------- 81 (339)
T cd06547 28 SYWQYVDTFVYFS--HSAVTIPP--------ADWINAAHRNGVPVLGTFIFEWTG--Q----VEWLEDFL---------- 81 (339)
T ss_pred cchhhhheeeccc--CccccCCC--------cHHHHHHHhcCCeEEEEEEecCCC--c----hHHHHHHh----------
Confidence 35666 4455553 44555553 478899999999998866544320 0 00111110
Q ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-cHHHHHHHHHHHHhhc
Q 002161 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-MKSTMMKAKHALHSLT 604 (958)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i-~~~~~~~~~~al~~i~ 604 (958)
..++..+..+++-|+.-++.||+||+=+|.=... +.+.+...++.++.+.
T Consensus 82 -------------~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~ 132 (339)
T cd06547 82 -------------KKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLK 132 (339)
T ss_pred -------------ccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHH
Confidence 0002234566777788888999999999988776 4444444444444444
No 93
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.26 E-value=1.9 Score=54.61 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccC-CCCCcceEecCCCCccccCCCcC----CCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD-KVVPGYYLRRNSDGFIEHSTCMN----NTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svld-k~vP~YY~r~~~~G~~~~stc~~----d~a~e~~mv~k~iiD 566 (958)
-|+||+.+|++|||+|.=+...=-... + +++ .+.-||+.+.. +|......|.+ -.++.||.+++....
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~-~-----~~~e~~~~Gy~~k~~-~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~ 395 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDS-P-----LFKEAIEKGYFVKDP-DGEIYQADFWPGNSAFPDFTNPDAREWWAS 395 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCC-c-----hHHHHHHCCeEEECC-CCCEeeecccCCcccccCCCCHHHHHHHHH
Confidence 679999999999999987655322211 1 111 12247777644 46655544443 458999999999996
Q ss_pred HHHHHHHhCCccEEEEecCCCC
Q 002161 567 DLLCWAVNYKVDGFRFDLMGHI 588 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl~~~i 588 (958)
....-+.++|||||=.|.--..
T Consensus 396 ~~~~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 396 DKKKNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHhHHHhcCccEEEccCCCCc
Confidence 5555556899999999876443
No 94
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=83.86 E-value=1.8 Score=39.42 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=26.6
Q ss_pred CCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcEEEECCC
Q 002161 878 VPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 878 ~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~~~~lp~ 923 (958)
..||++|.|.+.. +.++|++|.+++++++.+..
T Consensus 8 ~~gvYvYfR~~~~-------------~tVmVilN~n~~~~~ldl~r 40 (78)
T PF10438_consen 8 QDGVYVYFRYYDG-------------KTVMVILNKNDKEQTLDLKR 40 (78)
T ss_dssp BTTEEEEEEEESS-------------EEEEEEEE-SSS-EEEEGGG
T ss_pred cCCEEEEEEEcCC-------------CEEEEEEcCCCCCeEEcHHH
Confidence 3789999998763 78999999999999998764
No 95
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=82.09 E-value=9.1 Score=48.08 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=22.0
Q ss_pred CccccceeccchhhhhhHHHHHHcCCceEEeCccccC
Q 002161 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393 (958)
Q Consensus 357 rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~ 393 (958)
.|+|..+. +-++.+++.|.+.+.|+|+...
T Consensus 161 IGDfgdl~-------~l~d~~a~~G~~~~qlnPlha~ 190 (695)
T PRK11052 161 IGDFGDLK-------QMLEDVAKRGGDFIGLNPIHAL 190 (695)
T ss_pred eecHHHHH-------HHHHHHHHcCCCEEEECCCCcC
Confidence 37775532 3366678889999999999853
No 96
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=80.87 E-value=2.8 Score=50.50 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCEEEEEeeec
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
+++++.+.++++||.+|.|+.+-
T Consensus 193 Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 193 QWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEeccce
Confidence 46777888999999999999863
No 97
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=80.55 E-value=2.2 Score=47.03 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
+.++||+.||++|++|++-+... +++...+-++.
T Consensus 67 dp~~~i~~l~~~g~~~~~~~~P~----------------------------------------------v~~w~~~~~~~ 100 (265)
T cd06589 67 NPKSMIDELHDNGVKLVLWIDPY----------------------------------------------IREWWAEVVKK 100 (265)
T ss_pred CHHHHHHHHHHCCCEEEEEeChh----------------------------------------------HHHHHHHHHHH
Confidence 37999999999999999966331 14455555555
Q ss_pred HHHhCCccEEEEecCC
Q 002161 571 WAVNYKVDGFRFDLMG 586 (958)
Q Consensus 571 W~~ey~IDGFRfDl~~ 586 (958)
...++|||||=+|...
T Consensus 101 ~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 101 LLVSLGVDGFWTDMGE 116 (265)
T ss_pred hhccCCCCEEeccCCC
Confidence 5568999999999664
No 98
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=80.03 E-value=13 Score=44.92 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCEEEEEeeec
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
.++++.+.+|++||++|-|+.+-
T Consensus 199 Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 199 QWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHCCCEEEEeeecc
Confidence 35667788999999999999873
No 99
>PLN02635 disproportionating enzyme
Probab=79.25 E-value=11 Score=46.02 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcCCEEEEEeee
Q 002161 491 EFRRMVQALNHIGLHVVLDVVY 512 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVy 512 (958)
+++++-+.+|++||++|-|+.+
T Consensus 225 Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 225 QWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHCCCEEEEEeec
Confidence 3567788899999999999985
No 100
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.78 E-value=5.9 Score=49.82 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred CeeeEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHHH
Q 002161 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (958)
Q Consensus 764 GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~~ 843 (958)
|.|+|+||+|++..+.-+.+ ..+||...+ ++ . -..+.+++
T Consensus 565 GkkLlFmG~Efgq~~ew~~~--------~~ldW~ll~-------------------------~~------~-h~~~~~~~ 604 (730)
T PRK12568 565 GDKLLFMGAEFGQWADWNHD--------QSLDWHLLD-------------------------GA------R-HRGMQQLV 604 (730)
T ss_pred CcceeeCchhhCCcccccCC--------CCccccccC-------------------------Ch------h-HHHHHHHH
Confidence 99999999999975432211 245554321 10 1 14688999
Q ss_pred HHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCcE---EEE
Q 002161 844 SDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEV---SFV 920 (958)
Q Consensus 844 k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~~---~~~ 920 (958)
|+|++||+++|+|...+... ....|.... +....||+|.|.+..+ ..+.++||+|+|+.++ .+-
T Consensus 605 ~dLn~ly~~~paL~~~d~~~--~gf~wi~~~-d~~~sv~af~R~~~~~----------~~~~v~vV~Nft~~~~~~Y~ig 671 (730)
T PRK12568 605 GDLNAALRRTPALYRGTHRA--DGFDWSVAD-DARNSVLAFIRHDPDG----------GGVPLLAVSNLTPQPHHDYRVG 671 (730)
T ss_pred HHHHHHHHhChhhhcccCCC--CCeEEEeCC-CCCCcEEEEEEecCCC----------CCCeEEEEECCCCCCccCeEEC
Confidence 99999999999998776432 123344332 3346799999987531 1256999999999854 455
Q ss_pred CCC
Q 002161 921 SPA 923 (958)
Q Consensus 921 lp~ 923 (958)
+|.
T Consensus 672 ~p~ 674 (730)
T PRK12568 672 VPR 674 (730)
T ss_pred CCC
Confidence 664
No 101
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=76.56 E-value=4 Score=50.24 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=62.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH---------hCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCC-----CCc
Q 002161 550 MNNTASEHYMVERLIIDDLLCWAV---------NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDG-----SSI 615 (958)
Q Consensus 550 ~~d~a~e~~mv~k~iiDsl~~W~~---------ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~-----~~~ 615 (958)
.+|++-.||.|+..-+..|-|.+. +..+||||+|++.++..+.++.+...+++... ++. -+-
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYg----v~~~~a~An~H 218 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYG----VDKNDANANKH 218 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-----TTTBHHHHCTC
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhC----CCcChhhHhhh
Confidence 356788999999999999998886 78999999999999999988877776665432 111 123
Q ss_pred eEeCcccccccccccccCcccccccCCCCceeecchHHHHhhcC
Q 002161 616 YIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLG 659 (958)
Q Consensus 616 ~l~GEgWd~gev~~~~~~~~a~q~~l~gt~ig~fnDrlRdavrg 659 (958)
+-|=|.|.......... ....|+ ++.+.+|-++..
T Consensus 219 lSilE~ws~nd~~y~~~-~g~~qL--------~mD~~~~~~l~~ 253 (809)
T PF02324_consen 219 LSILEAWSSNDPDYVKD-TGNPQL--------TMDNGLRLALLY 253 (809)
T ss_dssp --EESSSTTTHHHHHHH-TTSSSB--------EEEHHHHHHHHH
T ss_pred heeeeccccCChHHHhc-CCCcee--------eecHHHHHHHHH
Confidence 56779998765321110 111233 356777777764
No 102
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=76.23 E-value=5.6 Score=51.46 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCC-CCCcceEecCCCCccccC----CCcCCCCCCCHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHS----TCMNNTASEHYMVERLIID 566 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk-~vP~YY~r~~~~G~~~~s----tc~~d~a~e~~mv~k~iiD 566 (958)
.++||+.||++|+++|.=+.. +..... ...+++. ...+||.+ +.+|..... +-+.-.++.||.++++..+
T Consensus 243 P~~mv~~Lh~~G~kvv~iidP-gI~~d~---gY~~y~eg~~~~~fvk-~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~ 317 (978)
T PLN02763 243 PKGLADDLHSIGFKAIWMLDP-GIKAEE---GYFVYDSGCENDVWIQ-TADGKPFVGEVWPGPCVFPDFTNKKTRSWWAN 317 (978)
T ss_pred HHHHHHHHHHCCCEEEEEEcC-CCccCC---CCHHHHhHhhcCeeEE-CCCCCeeEeeecCCCccccCCCCHHHHHHHHH
Confidence 799999999999999764422 222110 0111221 11245543 344442211 1123358999999999999
Q ss_pred HHHHHHHhCCccEEEEec
Q 002161 567 DLLCWAVNYKVDGFRFDL 584 (958)
Q Consensus 567 sl~~W~~ey~IDGFRfDl 584 (958)
.++.+++ .|||||=.|.
T Consensus 318 ~~k~l~d-~GVDG~W~Dm 334 (978)
T PLN02763 318 LVKDFVS-NGVDGIWNDM 334 (978)
T ss_pred HHHHHhc-CCCcEEEccC
Confidence 8888774 8999999997
No 103
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=72.84 E-value=9.7 Score=36.84 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=43.9
Q ss_pred EeCCeEEEEEEcC--CCCeEEEEEecCCCC--CCCceEEee-----ccCCCEEEEEeCCCCCCcEEEEEEEE
Q 002161 214 YAEETVSLYLWAP--TAQSVSACIYRDPLG--GNPLEVVQL-----KENDGVWSIKGPKSWEGCYYVYEVSV 276 (958)
Q Consensus 214 ~~~~~v~F~lWAP--tA~~V~L~ly~~~~~--~~~~~~~~M-----~~~~GvWsv~~~~~~~G~~Y~y~v~~ 276 (958)
++++.+++||++. .+++|.|+.-+.... .......+| ++..+.|+++++.......|.|+|..
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 4678899999986 567888765443221 122356778 34568999999988778899999975
No 104
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=72.71 E-value=18 Score=41.66 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCC-CHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASE-HYMVERLIIDDLL 569 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e-~~mv~k~iiDsl~ 569 (958)
=+++|++||++.||++.+ |-|... |. .|.|-.. ..+... . ..+.... ...+.+++.+-++
T Consensus 139 iv~El~~A~rk~Glk~G~---Y~S~~d---w~--------~~~~~~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~ql~ 199 (346)
T PF01120_consen 139 IVGELADACRKYGLKFGL---YYSPWD---WH--------HPDYPPD--EEGDEN--G-PADGPGNWQRYYNEYWLAQLR 199 (346)
T ss_dssp HHHHHHHHHHHTT-EEEE---EEESSS---CC--------CTTTTSS--CHCHHC--C---HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEE---EecchH---hc--------CcccCCC--ccCCcc--c-ccccchhhHhHhhhhhHHHHH
Confidence 589999999999999998 444321 10 1111100 000000 0 0000011 1235568888999
Q ss_pred HHHHhCCccEEEEecCCCCc--HHHHHHHHHHHHhhccc
Q 002161 570 CWAVNYKVDGFRFDLMGHIM--KSTMMKAKHALHSLTKE 606 (958)
Q Consensus 570 ~W~~ey~IDGFRfDl~~~i~--~~~~~~~~~al~~i~~~ 606 (958)
-.+..|++|.+=||.....+ .....++.+.++++.|+
T Consensus 200 EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~ 238 (346)
T PF01120_consen 200 ELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPD 238 (346)
T ss_dssp HHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCe
Confidence 99999999999999987533 33456788888888863
No 105
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=72.66 E-value=27 Score=38.50 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHh
Q 002161 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHS 602 (958)
Q Consensus 557 ~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~ 602 (958)
++.-++-.++++..++++|++||+-||.-.......+..+.++||+
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~ 138 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRS 138 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHH
Confidence 3445566688899999999999999999865555555555555554
No 106
>PLN03244 alpha-amylase; Provisional
Probab=71.83 E-value=4.3 Score=51.06 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=67.5
Q ss_pred Cee-eEecCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCcchhhHHHHHHH
Q 002161 764 GIP-FFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALEN 842 (958)
Q Consensus 764 GiP-fiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~W~~i~~~l~~~~~~p~~~~~~~~~~~ 842 (958)
|.| +++||.|+|.. ..+||.++.|+|...+ ..-.|..+. ++ ....+.++
T Consensus 702 G~kkLnFMGNEFGhp--------------e~~dfPr~gN~~s~~~-----arrdW~Lld----~~-------~hk~L~~F 751 (872)
T PLN03244 702 GHAYLNFMGNEFGHP--------------ERIEFPMPSNNFSFSL-----ANRCWDLLE----NE-------VHHHLFSF 751 (872)
T ss_pred CccceeecccccCCc--------------hheeccccCCCccccc-----cccCccccC----Ch-------hHHHHHHH
Confidence 788 79999999963 2456777778776433 234676532 21 13578999
Q ss_pred HHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCC
Q 002161 843 FSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT 915 (958)
Q Consensus 843 ~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~ 915 (958)
+|.|++|++++|+|+.|- + .+...+. ...||+|.|. .+|||+|+++.
T Consensus 752 drdLn~Ly~~~~aL~~gf-~----wI~~~d~----e~kVIAF~R~-----------------~LLfVfNF~P~ 798 (872)
T PLN03244 752 DKDLMDLDENEGILSRGL-P----NIHHVKD----AAMVISFMRG-----------------PFLFIFNFHPS 798 (872)
T ss_pred HHHHHHHHhcCcccccCC-c----EEeeecC----CCCEEEEEec-----------------CEEEEEeCCCC
Confidence 999999999999997543 1 2333333 3569999994 28999999985
No 107
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.99 E-value=53 Score=36.92 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
+++++++|+.+++.|++|..-+.+-... + |..+. -.+++++.+
T Consensus 119 l~~~~~~v~~ak~~g~~v~~~i~~~~~~---~-------------~~~~~---------------------~~~~~~~~~ 161 (287)
T PRK05692 119 LERFEPVAEAAKQAGVRVRGYVSCVLGC---P-------------YEGEV---------------------PPEAVADVA 161 (287)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEecC---C-------------CCCCC---------------------CHHHHHHHH
Confidence 5679999999999999998777763221 1 00010 025677777
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhh
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i 603 (958)
+... +.|+|.+++ |.+|.+.+..+.+....|++.
T Consensus 162 ~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 162 ERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 7765 689998887 999998888777777776654
No 108
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=69.20 E-value=15 Score=41.24 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W 571 (958)
..+|++.+|++|++|++=| -|... +.++ +..++ .-..++..|+-+++++..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i-~~~~~--~~~~---------~~~~~----------------~~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVI-TNLTN--GNFD---------SELAH----------------AVLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEE-ecCCC--CCCC---------HHHHH----------------HHhcCHHHHHHHHHHHHHH
Confidence 4689999999999999754 33221 1000 00111 0134567888899999999
Q ss_pred HHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002161 572 AVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 572 ~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~ 604 (958)
+++||+||+-+|.-. +..+........|+++.
T Consensus 99 l~~~~~DGidiDwE~-~~~~d~~~~~~fl~~lr 130 (313)
T cd02874 99 AKKYGYDGVNIDFEN-VPPEDREAYTQFLRELS 130 (313)
T ss_pred HHHhCCCcEEEeccc-CCHHHHHHHHHHHHHHH
Confidence 999999999999875 33333333344444443
No 109
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=68.31 E-value=12 Score=43.01 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
+.++||+.||++|++||+-+.. |... | ...| .-+.-.++.||.++++-.+.++.
T Consensus 65 dp~~mv~~L~~~G~klv~~i~P-~i~~-g---------~~~~---------------~~~~~pDftnp~ar~wW~~~~~~ 118 (332)
T cd06601 65 NPKEMFDNLHNKGLKCSTNITP-VISY-G---------GGLG---------------SPGLYPDLGRPDVREWWGNQYKY 118 (332)
T ss_pred CHHHHHHHHHHCCCeEEEEecC-ceec-C---------ccCC---------------CCceeeCCCCHHHHHHHHHHHHH
Confidence 3789999999999999887643 2210 0 0000 00112367899999998887777
Q ss_pred HHHhCCccEEEEecC
Q 002161 571 WAVNYKVDGFRFDLM 585 (958)
Q Consensus 571 W~~ey~IDGFRfDl~ 585 (958)
+. +.|||||=.|.-
T Consensus 119 l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 119 LF-DIGLEFVWQDMT 132 (332)
T ss_pred HH-hCCCceeecCCC
Confidence 65 479999999954
No 110
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=66.42 E-value=38 Score=39.72 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHH---HHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLI---IDD 567 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i---iDs 567 (958)
=+++|++||++.||++-+ | |. .+|-..|.|-...+.. ......+...+++ ..-
T Consensus 129 iv~el~~A~rk~Glk~G~---Y-~S----------~~DW~~p~y~~~~~~~----------~~~~~~~~~~~y~~~~~~Q 184 (384)
T smart00812 129 LVGELADAVRKRGLKFGL---Y-HS----------LFDWFNPLYAGPTSSD----------EDPDNWPRFQEFVDDWLPQ 184 (384)
T ss_pred hHHHHHHHHHHcCCeEEE---E-cC----------HHHhCCCccccccccc----------cccccchhHHHHHHHHHHH
Confidence 589999999999999998 4 21 1222235442110100 0012234566777 788
Q ss_pred HHHHHHhCCccEEEEecCCCCcHH--HHHHHHHHHHhhccc
Q 002161 568 LLCWAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTKE 606 (958)
Q Consensus 568 l~~W~~ey~IDGFRfDl~~~i~~~--~~~~~~~al~~i~~~ 606 (958)
++-.+..||-|.+=||.....+.. .+.++.+.++++.|+
T Consensus 185 l~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~ 225 (384)
T smart00812 185 LRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPV 225 (384)
T ss_pred HHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCC
Confidence 888899999999999987544443 346677888888764
No 111
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=66.29 E-value=48 Score=40.43 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCEEEEEeeec
Q 002161 492 FRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyN 513 (958)
++++-+.++.+||++|-|+-+-
T Consensus 214 ~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 214 FQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHhcCCcEEEEeCcce
Confidence 5566777889999999999773
No 112
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=66.01 E-value=12 Score=50.05 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCccccccc
Q 002161 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (958)
Q Consensus 555 ~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~ge 626 (958)
-++|...++|.+-.+.-++- ++|||+|-+..-|...-+...++.|+++| ++|+++|-+.-.|
T Consensus 486 eDsP~LW~~M~~Y~~~~Aki--F~G~RiDNCHSTPlhVaeylLd~AR~vnP--------nLyV~AELFTGSe 547 (1464)
T TIGR01531 486 EDSPYLWQHMKEYTEMTARI--FDGVRIDNCHSTPIHVAEYLLDAARKYNP--------NLYVVAELFTGSE 547 (1464)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hcceeeecccCCcHHHHHHHHHHHhhcCC--------CeEEEeeecCCcH
Confidence 45799999999999998885 99999999999999988888899999985 6999999987655
No 113
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=64.41 E-value=42 Score=38.69 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
-+|+|++|+-+.++||+||-.+ ++.|+.+-....+....+. +.++ ..+....++.-++..++.+.+++.+.
T Consensus 69 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~--~~~~------~~~~~~~~~~~L~~~~~~t~~fl~~v 140 (348)
T cd06562 69 PEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGC--YAVW------RKYCPEPPCGQLNPTNPKTYDFLKTL 140 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCC--Cccc------cccccCCCCccccCCChhHHHHHHHH
Confidence 3589999999999999999887 5678754211111000110 0000 00011123455788999999999999
Q ss_pred HHHHHHhCC
Q 002161 568 LLCWAVNYK 576 (958)
Q Consensus 568 l~~W~~ey~ 576 (958)
+...++-|.
T Consensus 141 l~E~~~lF~ 149 (348)
T cd06562 141 FKEVSELFP 149 (348)
T ss_pred HHHHHHhcC
Confidence 888887544
No 114
>PRK14705 glycogen branching enzyme; Provisional
Probab=64.34 E-value=19 Score=48.06 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhcCcccccCchhhhhceeEEecCCCCCCCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCCc
Q 002161 837 LAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTE 916 (958)
Q Consensus 837 ~~~~~~~k~Li~LRksspafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~~ 916 (958)
..+..++|+|++||+++|+|...+.+. ..+.|.+.. +....||+|.|.+.. .+.++||+|+++.+
T Consensus 1094 ~~~~~~~rdLn~ly~~~paL~~~d~~~--~gf~wi~~~-d~~~~vlaf~R~~~~------------~~~vlvv~Nftp~~ 1158 (1224)
T PRK14705 1094 RGIQLLTKDLNELYTSTPALYQRDNEP--GGFQWINGG-DADRNVLSFIRWDGD------------GNPLVCAINFSGGP 1158 (1224)
T ss_pred HHHHHHHHHHHHHHhcChhhhccCCCC--CceEEeecC-CCCCcEEEEEEeCCC------------CCEEEEEEcCCCCC
Confidence 467889999999999999998776543 234444322 234679999998642 14699999999988
Q ss_pred EE---EECC
Q 002161 917 VS---FVSP 922 (958)
Q Consensus 917 ~~---~~lp 922 (958)
+. +.+|
T Consensus 1159 ~~~y~igvp 1167 (1224)
T PRK14705 1159 HKGYTLGVP 1167 (1224)
T ss_pred ccCceECCC
Confidence 76 5455
No 115
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=61.90 E-value=12 Score=34.18 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCCcccCCCCCCEEEEEEeCCCC--cEEEEC
Q 002161 878 VPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT--EVSFVS 921 (958)
Q Consensus 878 ~~gviv~~~~d~~~~~~~~~~~d~~~d~ivVv~N~s~~--~~~~~l 921 (958)
..+||+|.|.+.. . +.++||+|++++ ...+.+
T Consensus 8 ~~~v~af~R~~~~-----------~-~~~lvv~Nf~~~~~~~~~~~ 41 (95)
T PF02806_consen 8 ENNVIAFERKDKG-----------D-DRVLVVFNFSPEAVYEDYRI 41 (95)
T ss_dssp SSSEEEEEETTTE-----------T-TEEEEEEESSSS-EEEEEEE
T ss_pred CCCEEEEEEcCCC-----------C-CEEEEEEECCCcccceeEEe
Confidence 3679999997531 1 279999999998 344443
No 116
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=60.80 E-value=2.2e+02 Score=34.83 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCCceeeecccccccchH
Q 002161 739 LCPTETISYVSAHDNETLF 757 (958)
Q Consensus 739 ~~P~~~iNyVs~HDn~tL~ 757 (958)
..|..+|.|++.|||.|+.
T Consensus 392 ~~~~nsva~tsTHD~ptl~ 410 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLR 410 (520)
T ss_pred hcccceeEEeccCCChhHH
Confidence 3566889999999999885
No 117
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=58.02 E-value=17 Score=49.71 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC--cHHHHHHHHHHHHhhcccccCcCCCCceEeCc
Q 002161 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI--MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE 620 (958)
Q Consensus 554 a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i--~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GE 620 (958)
.-|+|.|-+..-.-+..|+++=.|||.|+|-..-+ |..-+.+.+..+....... +-..+..|++.|
T Consensus 1045 RvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~~~~~~~~~~-~~~~~~~yivvE 1112 (1693)
T PRK14507 1045 RMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQAAVGAGPGPA-GRPPPGLYIVVE 1112 (1693)
T ss_pred eccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHHHhhhhhccc-ccCCCCceEEEE
Confidence 57999999999999999999999999999988665 5555666665544222100 000134677777
No 118
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=57.92 E-value=24 Score=44.69 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCCEEEEEee-eccccCC-CCCCCCCccCCCCCcceEecCCCCcc---ccCC--CcCCCCCCCHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVV-YNHLQGS-GPFDDNSVLDKVVPGYYLRRNSDGFI---EHST--CMNNTASEHYMVERLI 564 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVV-yNHt~~~-g~~~~~svldk~vP~YY~r~~~~G~~---~~st--c~~d~a~e~~mv~k~i 564 (958)
++++|+.||++|+|+|+=+- +.+++.+ +++++. ..+- ++- .+..|.. -+.+ --.-.+..||.+....
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g--~~~~---v~I-~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww 426 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRG--VAKD---VLI-KNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW 426 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCccccCccchhhhhh--hhhc---eee-ecccCchhhhcccCCCcccccccCCchHHHHH
Confidence 89999999999999876443 2344333 443321 1110 110 0111211 1101 1111356777888888
Q ss_pred HHHHHHHHHhCCccEEEEecC
Q 002161 565 IDDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 565 iDsl~~W~~ey~IDGFRfDl~ 585 (958)
.+.++..=+++.+|||=+|+-
T Consensus 427 ~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 427 LDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred HHHHHhhcccCCccceEEECC
Confidence 888888778899999999983
No 119
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=56.23 E-value=52 Score=37.68 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCc-----cccCCCcCCCCCCCHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-----IEHSTCMNNTASEHYMVER 562 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~-----~~~stc~~d~a~e~~mv~k 562 (958)
.+|+|++|+-|.++||+||-.+ ++-|+.+-.. ..|.+ ...+. .....+++.++..++.+.+
T Consensus 74 ~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~---------~~p~l----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~ 140 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEIDMPGHTNAALA---------AYPEL----NCDGKAKPLYTGIEVGFSSLDVDKPTTYE 140 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHH---------hChhh----ccCCCCCccccccCCCCcccCCCCHHHHH
Confidence 4699999999999999999887 4567643100 00110 00110 0011235667899999999
Q ss_pred HHHHHHHHHHHhC
Q 002161 563 LIIDDLLCWAVNY 575 (958)
Q Consensus 563 ~iiDsl~~W~~ey 575 (958)
++.+.+...+.-+
T Consensus 141 fl~~v~~E~~~~f 153 (329)
T cd06568 141 FVDDVFRELAALT 153 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 9998888877644
No 120
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=54.69 E-value=44 Score=44.87 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCEE--EEEeeeccccC-CCCCCCCC--ccCCCC---CcceEecCCCCccccCCCcCCCCCCCH--HH
Q 002161 491 EFRRMVQALNHIGLHV--VLDVVYNHLQG-SGPFDDNS--VLDKVV---PGYYLRRNSDGFIEHSTCMNNTASEHY--MV 560 (958)
Q Consensus 491 Efr~mV~alH~~Gi~V--IlDVVyNHt~~-~g~~~~~s--vldk~v---P~YY~r~~~~G~~~~stc~~d~a~e~~--mv 560 (958)
+++++-+.++++||+| |-|+.+-=... +..|.... .++..+ |+||. +.|+. ++.+-.+++.- .-
T Consensus 933 Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs---~~GQ~---WG~P~y~w~~l~~~g 1006 (1221)
T PRK14510 933 QWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFN---PEGQN---WGLPPYDPRALRRDG 1006 (1221)
T ss_pred HHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCC---ccccc---CCCcCcCHHHHHhcC
Confidence 3667788899999999 99998742221 12222111 233332 67773 34431 11122222110 01
Q ss_pred HHHHHHHHHHHHHhCCccEEEEecC
Q 002161 561 ERLIIDDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 561 ~k~iiDsl~~W~~ey~IDGFRfDl~ 585 (958)
-+..++-|+.-++ .+|+.|+|-.
T Consensus 1007 y~~w~~rlr~~~~--~~~~lRIDH~ 1029 (1221)
T PRK14510 1007 YRWFIERIRANMR--HAGALRIDHV 1029 (1221)
T ss_pred cHHHHHHHHHHHH--hCCeEEeccH
Confidence 1235555555554 5899999965
No 121
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=53.45 E-value=47 Score=38.37 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
.+.++|+.++++||+|||-+. .++. | .-+.++ .|.-- ..+.+|............+.+|.+++++...++.
T Consensus 48 ~lD~~l~~a~~~Gi~viL~~~-~~~~---P---~Wl~~~-~Pe~~-~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~ 118 (374)
T PF02449_consen 48 WLDRVLDLAAKHGIKVILGTP-TAAP---P---AWLYDK-YPEIL-PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRA 118 (374)
T ss_dssp HHHHHHHHHHCTT-EEEEEEC-TTTS-------HHHHCC-SGCCC--B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCeEEEEec-cccc---c---cchhhh-ccccc-ccCCCCCcCccCCccccchhHHHHHHHHHHHHHH
Confidence 588999999999999999776 2221 1 001111 12111 1233455444444555667899998888888777
Q ss_pred HHHhCC----ccEEEEecCC-C---CcHHHHHHHHHHHHhhc
Q 002161 571 WAVNYK----VDGFRFDLMG-H---IMKSTMMKAKHALHSLT 604 (958)
Q Consensus 571 W~~ey~----IDGFRfDl~~-~---i~~~~~~~~~~al~~i~ 604 (958)
.++.|+ |-|+-+|-=- . .........++-|++-.
T Consensus 119 l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 119 LAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp HHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred HHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 776665 7789888542 1 22333444555555443
No 122
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.03 E-value=62 Score=36.88 Aligned_cols=74 Identities=8% Similarity=0.091 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
-+|+|++|+-|.++||+||-.+ ++-|+.+-. +..|.+ ...+. ......+.++..++.+.+++.+.
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~---------~~~pel----~~~~~-~~~~~~~~l~~~~~~t~~f~~~l 146 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT---------KAMPEL----GLKNP-FSKYDKDTLDISNPEAVKFVKAL 146 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH---------HhhHHh----cCCCc-ccCCCcccccCCCHHHHHHHHHH
Confidence 4699999999999999999876 467774311 000110 00000 01223455688899999999999
Q ss_pred HHHHHHhCC
Q 002161 568 LLCWAVNYK 576 (958)
Q Consensus 568 l~~W~~ey~ 576 (958)
+...+.-+.
T Consensus 147 ~~E~~~~f~ 155 (326)
T cd06564 147 FDEYLDGFN 155 (326)
T ss_pred HHHHHHhcC
Confidence 888887665
No 123
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.70 E-value=81 Score=35.96 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCc--CCCCCCCHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCM--NNTASEHYMVERLII 565 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~--~d~a~e~~mv~k~ii 565 (958)
.+|+|++|+-+.++||+||-.+ ++-|+.+-.. ..|++-.. ..........+. +-++..+|.+.+++.
T Consensus 67 ~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~---------~ypel~~~-~~~~~~~~~~~~~~~~l~~~~p~t~~f~~ 136 (311)
T cd06570 67 QEQIREVVAYARDRGIRVVPEIDVPGHASAIAV---------AYPELASG-PGPYVIERGWGVFEPLLDPTNEETYTFLD 136 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecCccchHHHHH---------hCHHhccC-CCccccccccccCCCccCCCChhHHHHHH
Confidence 3589999999999999999887 4677753110 00111000 000001111111 236888899999988
Q ss_pred HHHHHHHHhC
Q 002161 566 DDLLCWAVNY 575 (958)
Q Consensus 566 Dsl~~W~~ey 575 (958)
+.+...+.-|
T Consensus 137 ~l~~E~~~lF 146 (311)
T cd06570 137 NLFGEMAELF 146 (311)
T ss_pred HHHHHHHHhC
Confidence 8888777543
No 124
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.46 E-value=72 Score=36.86 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccc--cCCCcCCCCCCCHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIE--HSTCMNNTASEHYMVERLII 565 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~--~stc~~d~a~e~~mv~k~ii 565 (958)
.+|+|++|+-+.++||+||-.+ ++.|+.+- +.. .|.+-. ......+. ....++-++..++.+.+++.
T Consensus 85 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~--------l~~-~pel~~-~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~ 154 (357)
T cd06563 85 QEEIREIVAYAAERGITVIPEIDMPGHALAA--------LAA-YPELGC-TGGPGSVVSVQGVVSNVLCPGKPETYTFLE 154 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCchhHHHH--------HHh-CccccC-CCCCCccccccCcCCCccCCCChhHHHHHH
Confidence 5699999999999999999887 46777531 100 011100 00000000 01234456888899999998
Q ss_pred HHHHHHHHhC
Q 002161 566 DDLLCWAVNY 575 (958)
Q Consensus 566 Dsl~~W~~ey 575 (958)
+.+...+.-|
T Consensus 155 ~ll~E~~~lF 164 (357)
T cd06563 155 DVLDEVAELF 164 (357)
T ss_pred HHHHHHHHhC
Confidence 8888877644
No 125
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=49.29 E-value=15 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEe
Q 002161 490 IEFRRMVQALNHIGLHVVLDV 510 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDV 510 (958)
.+++.+++.|+++||.|||-.
T Consensus 63 ~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 63 RDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp G-HHHHHHHHHHTT-EEEEEE
T ss_pred hhHHHHHHHHHHcCcEEEecc
Confidence 479999999999999999874
No 126
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=48.74 E-value=53 Score=33.99 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhcCCEEEEEeeecc
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNH 514 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNH 514 (958)
=+..+.+++.+.||+|++-+.+++
T Consensus 66 ~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 66 LLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCc
Confidence 478889999999999999988874
No 127
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=48.36 E-value=68 Score=36.17 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
-+|+|++|+-|.++||+||-.+ ++.|+.+-....+ +-..+.+ .+. ........++..++.+.+++.+.
T Consensus 71 ~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p----~l~~~~~------~~~-~~~~~~~~l~~~~~~t~~fl~~l 139 (303)
T cd02742 71 YAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFP----KLLTECY------AGL-KLRDVFDPLDPTLPKGYDFLDDL 139 (303)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCH----HhccCcc------ccC-CCCCCCCccCCCCccHHHHHHHH
Confidence 3589999999999999999887 5678753110000 0000111 000 00112345688899999999999
Q ss_pred HHHHHHhC
Q 002161 568 LLCWAVNY 575 (958)
Q Consensus 568 l~~W~~ey 575 (958)
+..++.-+
T Consensus 140 ~~e~~~lf 147 (303)
T cd02742 140 FGEIAELF 147 (303)
T ss_pred HHHHHHhC
Confidence 88888643
No 128
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=47.45 E-value=33 Score=35.62 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM 589 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~ 589 (958)
.++..++-+++++..|+++|++||+-+|......
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~ 117 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGA 117 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCC
Confidence 3456677888999999999999999999886544
No 129
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=47.37 E-value=91 Score=35.72 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=56.4
Q ss_pred CcCCCcCCCCCCCCCCCchhHHH-HHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEe----cCCC---
Q 002161 470 VLWGVPKGSYASNPNGSCRTIEF-RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLR----RNSD--- 541 (958)
Q Consensus 470 ~~y~ape~sygt~~~g~~ri~Ef-r~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r----~~~~--- 541 (958)
++..++|+..+...++. | .+=|++||+.|.+||-=+- . |...+.. | ||.. ..+.
T Consensus 65 ~d~vVID~~~~g~~~~~-----fs~~~i~~Lk~~g~~viaYlS---v---Ge~E~~R------~-y~~~~~~~~~~~~l~ 126 (315)
T TIGR01370 65 FELVVIDYSKDGTEDGT-----YSPEEIVRAAAAGRWPIAYLS---I---GAAEDYR------F-YWQKGWKVNAPAWLG 126 (315)
T ss_pred CCEEEEccccccCcccC-----CCHHHHHHHHhCCcEEEEEEE---c---hhccccc------h-hhhhhhhcCCHHHhC
Confidence 55677888775332221 2 4557788999988763222 2 2222111 1 2211 0010
Q ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCC
Q 002161 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~ 587 (958)
+...++...--++..++..+++|.+-+..-+ +-|+|||=+|.+..
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 1122232333457778899999998877654 56999999998865
No 130
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=46.47 E-value=39 Score=37.82 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH----------HHHHHHHHHHHhh
Q 002161 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----------STMMKAKHALHSL 603 (958)
Q Consensus 557 ~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~----------~~~~~~~~al~~i 603 (958)
++.-++-+++++..|+++|++||+-||.-..... .++.+++++|++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccc
Confidence 4566888999999999999999999998876543 2345555555554
No 131
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.09 E-value=96 Score=34.84 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHH
Q 002161 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~ 569 (958)
.+|.+-|+.|+++|++|+|=+ .|. .. .|. ...+.-++-+.++|.
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI-------GG~-~~---------~~~-------------------~~s~~~a~~Fa~~l~ 102 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI-------GGA-GG---------SYS-------------------LSSDADAKDFADYLW 102 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc-------cCC-CC---------CcC-------------------CCCHHHHHHHHHHHH
Confidence 379999999999999999942 121 10 011 123445556666665
Q ss_pred HHH---------H---hCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002161 570 CWA---------V---NYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 570 ~W~---------~---ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~ 604 (958)
.+. + ++++|||-||.-.... ..+....++||+..
T Consensus 103 ~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~-~~~~~l~~~LR~~~ 148 (280)
T cd02877 103 NAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP-ENYDALAKRLRSLF 148 (280)
T ss_pred HHhCCccccccccccccccccceEEecccCCc-cCHHHHHHHHHHHh
Confidence 443 2 5679999999875433 33444555555543
No 132
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=44.64 E-value=91 Score=35.27 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHH
Q 002161 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~ 570 (958)
.+..-|++|+++|++||+=+ .|. .. . ++ . .+|. -++-+++++..
T Consensus 55 ~~~~~i~~lk~~G~kViiS~-------GG~-~g-~--------~~---------~-~~~~---------~~~~~~~a~~~ 98 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSF-------GGA-SG-T--------PL---------A-TSCT---------SADQLAAAYQK 98 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEe-------cCC-CC-C--------cc---------c-cCcc---------cHHHHHHHHHH
Confidence 57888999999999998821 121 10 0 11 0 0121 34566777777
Q ss_pred HHHhCCccEEEEecCCCCcHH--HHHHHHHHHHhhcc
Q 002161 571 WAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTK 605 (958)
Q Consensus 571 W~~ey~IDGFRfDl~~~i~~~--~~~~~~~al~~i~~ 605 (958)
.++.|++||.-||.-+-...+ .+.+..++|+++..
T Consensus 99 ~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~ 135 (294)
T cd06543 99 VIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK 135 (294)
T ss_pred HHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH
Confidence 889999999999998866543 24555555555553
No 133
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=43.48 E-value=48 Score=39.41 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhccc
Q 002161 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKE 606 (958)
Q Consensus 555 ~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~ 606 (958)
-.+|...++|.+-.+.-++- ++|||+|-...-|...-+...++-|+++|+
T Consensus 373 eDsP~LW~~M~~Yt~~~A~i--F~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 373 EDSPFLWKHMKEYTELMAKI--FHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHh--cCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 56899999999999998875 999999999999998888888888888863
No 134
>PLN02950 4-alpha-glucanotransferase
Probab=42.86 E-value=4.5e+02 Score=34.59 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=35.7
Q ss_pred eEEEEEEcCC---CCeEEEEEec--CCCCCCCceEEeec-cCCCEEEEEeCCCCC--CcEEEEEEE
Q 002161 218 TVSLYLWAPT---AQSVSACIYR--DPLGGNPLEVVQLK-ENDGVWSIKGPKSWE--GCYYVYEVS 275 (958)
Q Consensus 218 ~v~F~lWAPt---A~~V~L~ly~--~~~~~~~~~~~~M~-~~~GvWsv~~~~~~~--G~~Y~y~v~ 275 (958)
.|+|+|-+|+ -++|.|+ -+ .-..+.+.....|. .....|++.+..... ...|+|-+.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred eEEEEEecCccCCCCeEEEE-echhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEE
Confidence 6899999994 3566654 11 11122344567784 567899999864322 356888775
No 135
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=41.42 E-value=49 Score=37.18 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002161 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 555 ~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~ 604 (958)
..++..|+-+++++..++++|++||.-+|.-. ++.+........|+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~~~d~~~~~~fl~eL~ 131 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LPADDLPKYVAFLSELR 131 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CChhHHHHHHHHHHHHH
Confidence 35667888899999999999999999999874 44443344444444443
No 136
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=40.95 E-value=26 Score=29.63 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=12.2
Q ss_pred CEEEEEEeCCCCcEEEECCC
Q 002161 904 SYIVVIFNSSPTEVSFVSPA 923 (958)
Q Consensus 904 d~ivVv~N~s~~~~~~~lp~ 923 (958)
..++.++|.+++++++++|.
T Consensus 12 ~~y~F~~N~s~~~~~v~l~~ 31 (58)
T PF08533_consen 12 GRYLFLLNFSDEPQTVTLPE 31 (58)
T ss_dssp TTEEEEEE-SSS-EE----T
T ss_pred CEEEEEEECCCCCEEEEcCC
Confidence 46899999999999999864
No 137
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=40.71 E-value=53 Score=36.94 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCC
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~ 587 (958)
.++..|+-++++++.|+++|++||.-+|-..-
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P 119 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFP 119 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCC
Confidence 46678899999999999999999999997753
No 138
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.35 E-value=1.8e+02 Score=32.24 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
+++.+++|+.++++|++|.+-+..-+. . -.+++.+.+
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~----------------------~---------------------~~~~~~~~~ 144 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISG----------------------Y---------------------SDEELLELL 144 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecC----------------------C---------------------CHHHHHHHH
Confidence 788999999999999987765554221 0 024556666
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
+. +.++|+|.+++ |.+|.+.+..+.+...+|++..
T Consensus 145 ~~-~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 145 EL-VNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HH-HHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 65 45789999997 9999999888888777777643
No 139
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=38.99 E-value=66 Score=41.34 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCcCCCCceEeCcccccccc
Q 002161 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (958)
Q Consensus 557 ~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~~~~~~~~~~~~~l~GEgWd~gev 627 (958)
.|-..+.|..-...=++- +||||+|-...-|...-+...++.|+++| ++|+++|-+.-.+.
T Consensus 510 sPyLWq~M~kY~e~tAri--FdG~RlDNcHsTPlHVaEylLd~ARk~nP--------nlYVvAELFtgSe~ 570 (1521)
T KOG3625|consen 510 SPYLWQHMKKYTEITARI--FDGVRLDNCHSTPLHVAEYLLDAARKLNP--------NLYVVAELFTGSED 570 (1521)
T ss_pred ChHHHHHHHHHHHHHHHH--hcceeeccCCCCchhHHHHHHHHHHhcCC--------CeEEEeeeccCCcc
Confidence 466677777666665554 89999999988888777778888899985 69999998866553
No 140
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=38.89 E-value=12 Score=46.65 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCcc-cccCchhhhhceeEEecCCCCCCCcEEEEEEEcC
Q 002161 842 NFSDVLRIRYSSPL-FRLRTANAIQERICFHNTGPSAVPGVIVMSIEDG 889 (958)
Q Consensus 842 ~~k~Li~LRksspa-frlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~ 889 (958)
...+++++|+.+|. |+.|++..+.. .|+. ..-+|+|.|...
T Consensus 775 v~~~aL~lR~~~~elF~~GdY~Pl~~------~G~~-a~hviAFaR~~~ 816 (889)
T COG3280 775 VTAAALRLRREHPELFAGGDYLPLFA------AGPA-ADHVIAFARGKD 816 (889)
T ss_pred HHHHHHHHHHhchHhhcCCCeeeecc------cCch-hHHHHHHhhccC
Confidence 44689999999986 99999865431 1211 234888887654
No 141
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=38.84 E-value=19 Score=40.94 Aligned_cols=103 Identities=18% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCCCC-ccCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCC
Q 002161 463 YNWGY-NPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD 541 (958)
Q Consensus 463 ~nWGY-dp~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~ 541 (958)
.+|-| |..-|+. + .+-+-|. ...|+++|++|.+|+==+.+.+-.. ..+. ...|.+ +++
T Consensus 24 ~~W~yiD~fvyws-h-~~i~iP~--------~~widaAHrnGV~vLGTiife~~~~-~~~~-~~ll~~---------~~~ 82 (311)
T PF03644_consen 24 SYWQYIDIFVYWS-H-GLITIPP--------AGWIDAAHRNGVKVLGTIIFEWGGG-AEWC-EELLEK---------DED 82 (311)
T ss_dssp --GGG-SEEEET--T-BSSE-----------HHHHHHHHHTT--EEEEEEEEEE---HHHH-HHHT------------TT
T ss_pred ccccceeeEeecc-c-ccccCCC--------chhHHHHHhcCceEEEEEEecCCch-HHHH-HHHHcC---------Ccc
Confidence 35555 5555555 2 2333332 4789999999999987666633210 0000 011111 112
Q ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH-HHHHHHHHHHHhhc
Q 002161 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-STMMKAKHALHSLT 604 (958)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i~~-~~~~~~~~al~~i~ 604 (958)
|. .+ +.+-|..-++.||+||+=+-.=..++. ..+..++..|+.++
T Consensus 83 g~-------------~~-----~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~ 128 (311)
T PF03644_consen 83 GS-------------FP-----YADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLR 128 (311)
T ss_dssp S---------------H-----HHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHH
T ss_pred cc-------------cH-----HHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHH
Confidence 21 12 244455567779999998876666554 33333333333333
No 142
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=38.23 E-value=40 Score=38.44 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHHhhcCCEEEEEeeeccc
Q 002161 493 RRMVQALNHIGLHVVLDVVYNHL 515 (958)
Q Consensus 493 r~mV~alH~~Gi~VIlDVVyNHt 515 (958)
.+..++|.+.||-||+|+--.+.
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTB
T ss_pred HHHHHHHHhCCCEEEEecCCCCc
Confidence 46667788999999999976543
No 143
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=38.14 E-value=66 Score=36.42 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~ 585 (958)
.++..|+-+++++..|+++|++||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 356678889999999999999999999976
No 144
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=37.94 E-value=37 Score=38.32 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl 584 (958)
.++..|+-+++++..++++||+||.-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 45678999999999999999999999993
No 145
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=35.94 E-value=78 Score=35.69 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCC
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~ 587 (958)
.++..|+-+++++..|+++|++||+-+|.-..
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~ 118 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYP 118 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCC
Confidence 44567888999999999999999999997654
No 146
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.44 E-value=55 Score=36.01 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEe
Q 002161 490 IEFRRMVQALNHIGLHVVLDV 510 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDV 510 (958)
++..++|+.+|++|++|+-.|
T Consensus 100 ~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 100 EERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHhCCCeEeccc
Confidence 478899999999999998654
No 147
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=35.02 E-value=2.7e+02 Score=31.54 Aligned_cols=109 Identities=15% Similarity=0.023 Sum_probs=63.5
Q ss_pred cCcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCC
Q 002161 469 PVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHST 548 (958)
Q Consensus 469 p~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~st 548 (958)
+..--++|+||-...+++-.++|+|.|. +.|..+|-=+-+--. ++..+-.+....+-.|++--..++ ++.
T Consensus 43 ~f~llVVDps~~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~a-e~yR~Ywd~~w~~~~p~wLg~edP-----~W~ 112 (300)
T COG2342 43 PFDLLVVDPSYCGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEA-ESYRFYWDKYWLTGRPDWLGEEDP-----EWP 112 (300)
T ss_pred CCcEEEEeccccCCCCCcCcHHHHHHHh----cCCeeEEEEEechhh-hhhhhHhhhhhhcCCcccccCCCC-----CCC
Confidence 3444578888766555666788888554 567555544433221 111110001111223444322222 244
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC
Q 002161 549 CMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (958)
Q Consensus 549 c~~d~a~e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~~i 588 (958)
++-.+.+-+|+-++.+.+-+...+ +.|+||.=+|.+.-.
T Consensus 113 Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 113 GNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred CCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 555677888999999998888865 579999999998654
No 148
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=33.84 E-value=39 Score=39.26 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeec
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYN 513 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyN 513 (958)
+++|++|++.||+.||+||.||-..
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHH
Confidence 5789999999999999999999653
No 149
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=31.74 E-value=72 Score=35.25 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEecCC
Q 002161 559 MVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 559 mv~k~iiDsl~~W~~ey~IDGFRfDl~~ 586 (958)
..++-+++|+..++++||+||.-+|--.
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~ 123 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEH 123 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeeccc
Confidence 4556678999999999999999999884
No 150
>PLN03059 beta-galactosidase; Provisional
Probab=31.04 E-value=78 Score=40.69 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhcCCEEEEE
Q 002161 489 TIEFRRMVQALNHIGLHVVLD 509 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlD 509 (958)
..++.++++.+++.||.||+=
T Consensus 97 ~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 97 RYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred hHHHHHHHHHHHHcCCEEEec
Confidence 458999999999999999985
No 151
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.02 E-value=1.3e+02 Score=36.06 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccC
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQG 517 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~ 517 (958)
-+|+|++|+-++++||+||-.+ ++-|+.+
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 4699999999999999999887 5678753
No 152
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=30.93 E-value=55 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHhhcCCEEEEEe
Q 002161 487 CRTIEFRRMVQALNHIGLHVVLDV 510 (958)
Q Consensus 487 ~ri~Efr~mV~alH~~Gi~VIlDV 510 (958)
.++.|++.+-+.+.++||+|++|=
T Consensus 19 ~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 19 MSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred eeHHHHHHHHHHHHhCCcEEEECC
Confidence 458999999999999999999983
No 153
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=30.37 E-value=90 Score=35.76 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 002161 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (958)
Q Consensus 556 e~~mv~k~iiDsl~~W~~ey~IDGFRfDl~~ 586 (958)
.++..|+-+++++..|+++|++||.-+|-..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 122 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY 122 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec
Confidence 3456788889999999999999999999653
No 154
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=30.27 E-value=76 Score=35.68 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=19.5
Q ss_pred CcCCCcCCCCCCCCCCCchhHHHHHHHHHHhhcCCEEEEEeeecc
Q 002161 470 VLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH 514 (958)
Q Consensus 470 ~~y~ape~sygt~~~g~~ri~Efr~mV~alH~~Gi~VIlDVVyNH 514 (958)
.+|..|++.|= +.+.++|+.|+++||.+. +|+=|
T Consensus 77 ~d~~~~N~~YF---------~~~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 77 FDFTRPNPAYF---------DHLDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp ---TT----HH---------HHHHHHHHHHHHTT-EEE--EESS-
T ss_pred cCCCCCCHHHH---------HHHHHHHHHHHHCCCeEE--EEEEE
Confidence 46666776663 468999999999999985 55444
No 155
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=29.36 E-value=2.3e+02 Score=25.51 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=34.9
Q ss_pred eEEEEEEcCC-CCeEEEEEecCCCCCCCceEEee-ccCCCEEEEEeCC-CCC-----CcEEEEEEEE
Q 002161 218 TVSLYLWAPT-AQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK-SWE-----GCYYVYEVSV 276 (958)
Q Consensus 218 ~v~F~lWAPt-A~~V~L~ly~~~~~~~~~~~~~M-~~~~GvWsv~~~~-~~~-----G~~Y~y~v~~ 276 (958)
.++|.+..|. |.+|+|.||+... ...+++.+ ....|.-++.-.+ +.. --.|.|+|..
T Consensus 13 ~~~~~~~l~~~a~~v~v~I~d~~G--~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 13 KGSIEYTLPEDADNVTVTIYDSNG--QVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTS---EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEEeCCCcccEEEEEEEcCCC--CEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 5777777886 5679999999854 34466677 3445655554442 122 2258888864
No 156
>PF15260 FAM219A: Protein family FAM219A
Probab=28.90 E-value=22 Score=34.97 Aligned_cols=8 Identities=63% Similarity=1.913 Sum_probs=4.6
Q ss_pred eeecccCC
Q 002161 56 RCCCCCSS 63 (958)
Q Consensus 56 ~~~~~~~~ 63 (958)
+|||||++
T Consensus 112 ~~~~C~~~ 119 (125)
T PF15260_consen 112 SCCCCQPS 119 (125)
T ss_pred cccccCCC
Confidence 46666544
No 157
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.74 E-value=90 Score=35.28 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
.+|+|++++-|.++||+||-.+ ++-|+.. ++. .|.|- ...+. ...+.-++..++...++|.+.
T Consensus 59 ~~ei~ei~~yA~~~gI~vIPeid~pGH~~~--------~l~--~~~~~-~l~~~-----~~~~~~l~~~~~~t~~fi~~l 122 (301)
T cd06565 59 KEEIREIDDYAAELGIEVIPLIQTLGHLEF--------ILK--HPEFR-HLREV-----DDPPQTLCPGEPKTYDFIEEM 122 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCHHHHHH--------HHh--Ccccc-ccccc-----CCCCCccCCCChhHHHHHHHH
Confidence 4699999999999999999765 3567632 111 12221 11111 112445688889999999988
Q ss_pred HHHHHHhCC
Q 002161 568 LLCWAVNYK 576 (958)
Q Consensus 568 l~~W~~ey~ 576 (958)
+...+.-+.
T Consensus 123 i~ev~~~f~ 131 (301)
T cd06565 123 IRQVLELHP 131 (301)
T ss_pred HHHHHHhCC
Confidence 888776543
No 158
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.20 E-value=50 Score=37.99 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEeee
Q 002161 490 IEFRRMVQALNHIGLHVVLDVVY 512 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVVy 512 (958)
.-|+++++.+|+.||+||.||-.
T Consensus 49 ~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCH
Confidence 35999999999999999999865
No 159
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.16 E-value=3.6e+02 Score=29.09 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
+++..+.++.+++.|+.|.+.+..-.. | .. -.+++.+.+
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~---------------------------------~-----~~---~~~~l~~~~ 152 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFG---------------------------------C-----KT---DPEYVLEVA 152 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecC---------------------------------C-----CC---CHHHHHHHH
Confidence 677889999999999988776643211 0 00 123555556
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhcc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLTK 605 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~~ 605 (958)
+.+ .++|+|.+++ |..|.+.+..+.+....+++..+
T Consensus 153 ~~~-~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 153 KAL-EEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHH-HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 654 5789999999 99999999888888888877653
No 160
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.02 E-value=3.6e+02 Score=29.98 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
++.++++|+.+++.|++|+.-+.+-.. +. . -.+++.+.+
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~-----------------~---------------------~~~~~~~~~ 155 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGS---PV-----------------H---------------------TLEYYVKLA 155 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCC---CC-----------------C---------------------CHHHHHHHH
Confidence 567888899999999888764433111 00 0 024555555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhh
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i 603 (958)
+.. .++|+|-+++ |.+|.+.+..+.+...+|++.
T Consensus 156 ~~~-~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 156 KEL-EDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHH-HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 654 4689999998 999999988888777777654
No 161
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.61 E-value=81 Score=34.87 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEee
Q 002161 490 IEFRRMVQALNHIGLHVVLDVV 511 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVV 511 (958)
++..++|+.+.++|++|+-.|=
T Consensus 113 ~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 113 EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHHHCCCEEeeccc
Confidence 4788999999999999987764
No 162
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=26.36 E-value=6e+02 Score=29.49 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEe-eeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIID 566 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiD 566 (958)
.+..+++++++||+.||-+|+.+ +|-.... ..++ ..| +... -++|..
T Consensus 141 ~~~~l~rv~~ec~~~giPlllE~l~y~~~~~----~~~~------~~~-------------------a~~~---p~~V~~ 188 (340)
T PRK12858 141 KHAFVERVGAECRANDIPFFLEPLTYDGKGS----DKKA------EEF-------------------AKVK---PEKVIK 188 (340)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeccCCCcc----cccc------ccc-------------------cccC---HHHHHH
Confidence 35679999999999999999985 6654211 1000 001 0111 258999
Q ss_pred HHHHHHH-hCCccEEEEecCCCC
Q 002161 567 DLLCWAV-NYKVDGFRFDLMGHI 588 (958)
Q Consensus 567 sl~~W~~-ey~IDGFRfDl~~~i 588 (958)
+++...+ +||+|=+-...-+.+
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~ 211 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDM 211 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCc
Confidence 9999887 899998888776554
No 163
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=26.11 E-value=1.4e+02 Score=34.27 Aligned_cols=156 Identities=22% Similarity=0.280 Sum_probs=84.5
Q ss_pred ceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccccCCCCCcccccccccCCCCCccc
Q 002161 335 ISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVF 414 (958)
Q Consensus 335 ~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~i~e~~~~~~~~~~~~~~~~ 414 (958)
--||=++|.+=......+ ....|-|.==. ...+++++.+.++||.+|-|-|+.+-..-++
T Consensus 28 dLI~PlFV~eg~~~~~~I-~smPg~~r~si---d~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~---------------- 87 (324)
T PF00490_consen 28 DLIYPLFVVEGENEKEPI-SSMPGVYRYSI---DSLVKEVEEAVDLGIRAVILFGVIDPSKKDE---------------- 87 (324)
T ss_dssp GEEEEEEEESSSSSEEEE-TTSTTEEEEEH---HHHHHHHHHHHHTT--EEEEEEE-SCSC-BS----------------
T ss_pred HeEEEEEEecCCCcceec-cCCCCeeeeCH---HHHHHHHHHHHHCCCCEEEEEeeCCcccCCc----------------
Confidence 458888887644321111 12346553211 2457889999999999999999965432111
Q ss_pred ccCCCCcccceehccCccccchhhhhhcCCCCCHHHHHHHHhhcCCCCCCCCCccCcCCCcCCCCCCCCCCCchhHHHHH
Q 002161 415 FGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRR 494 (958)
Q Consensus 415 ~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sygt~~~g~~ri~Efr~ 494 (958)
.|+.+-+++|. ..+
T Consensus 88 -------------------------------------------------------------~gs~a~~~~g~-----v~~ 101 (324)
T PF00490_consen 88 -------------------------------------------------------------EGSEAYNPDGL-----VQR 101 (324)
T ss_dssp -------------------------------------------------------------S-GGGGSTTSH-----HHH
T ss_pred -------------------------------------------------------------chhcccCCCCh-----HHH
Confidence 23444455553 344
Q ss_pred HHHHHhh--cCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHHH
Q 002161 495 MVQALNH--IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (958)
Q Consensus 495 mV~alH~--~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W~ 572 (958)
.|+++++ -.|-||-||-...-...|-.+ +++ +.+|.+ .|...-+.+....+..+
T Consensus 102 air~iK~~~pdl~vi~Dvclc~YT~hGHcG---il~----------~~~g~i-----------dND~Tl~~Lak~Al~~A 157 (324)
T PF00490_consen 102 AIRAIKKAFPDLLVITDVCLCEYTSHGHCG---ILD----------DEDGEI-----------DNDETLERLAKQALSHA 157 (324)
T ss_dssp HHHHHHHHSTTSEEEEEE-STTTBTSSSSS---EB-----------CTTSSB-----------EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEecccccccCCCceE---EEE----------CCCCeE-----------ecHHHHHHHHHHHHHHH
Confidence 4555553 379999999997765443211 121 123333 34455566666666667
Q ss_pred HhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002161 573 VNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 573 ~ey~IDGFRfDl~~~i~~~~~~~~~~al~~i~ 604 (958)
+- |.|-.-= +.++......+|++|++-.
T Consensus 158 ~A-GADiVAP---SdMMDGrV~aIR~aLd~~g 185 (324)
T PF00490_consen 158 EA-GADIVAP---SDMMDGRVGAIREALDEAG 185 (324)
T ss_dssp HH-T-SEEEE----S--TTHHHHHHHHHHHTT
T ss_pred Hh-CCCeecc---ccccCCHHHHHHHHHHhCC
Confidence 64 8886533 3445556677888887653
No 164
>TIGR03356 BGL beta-galactosidase.
Probab=25.84 E-value=1.3e+02 Score=35.73 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEee
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVV 511 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVV 511 (958)
.++-+++||++|+++||++|+++.
T Consensus 92 ~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 92 GLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeec
Confidence 367799999999999999999985
No 165
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.88 E-value=4.8e+02 Score=24.81 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
.++|+++|++++ |+.|+-=++.+. .+..|.||.. .|. ++-
T Consensus 9 ~l~El~~L~~t~---g~~vv~~~~q~~-------------~~~~p~~~iG---~GK---------------------~ee 48 (95)
T PF13167_consen 9 SLEELEELAETA---GYEVVGTVVQKR-------------RKPDPKTYIG---SGK---------------------VEE 48 (95)
T ss_pred HHHHHHHHHHHC---CCeEEEEEEecC-------------CCCCcceeec---hhH---------------------HHH
Confidence 477888888875 899998888863 2345778853 232 233
Q ss_pred HHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH
Q 002161 568 LLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL 600 (958)
Q Consensus 568 l~~W~~ey~IDGFRfDl~~~i~~~~~~~~~~al 600 (958)
++.++++.++|-+=||- .+.......+.+++
T Consensus 49 i~~~~~~~~~d~vvfd~--~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 49 IKELIEELDADLVVFDN--ELSPSQQRNLEKAL 79 (95)
T ss_pred HHHHHhhcCCCEEEECC--CCCHHHHHHHHHHH
Confidence 55667778999999995 46666655555554
No 166
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=24.73 E-value=63 Score=29.57 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHcCCceEEeCccccCC
Q 002161 368 SAGVSHLKKLSNAGLTHVHLLPTFQFA 394 (958)
Q Consensus 368 s~~i~hL~~L~~lGvT~I~LlPvfd~~ 394 (958)
+..-+-|+.|++.|++.|.++|+|-+.
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCcccc
Confidence 344566888999999999999999874
No 167
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=24.11 E-value=1.2e+02 Score=34.81 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002161 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (958)
Q Consensus 557 ~~mv~k~iiDsl~~W~~ey~IDGFRfDl~ 585 (958)
++..|+-+++++..++++|++||+-+|--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 56788889999999999999999999988
No 168
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.04 E-value=4.6e+02 Score=30.23 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhh
Q 002161 562 RLIIDDLLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (958)
Q Consensus 562 k~iiDsl~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i 603 (958)
+++.+.++. +.++|+|.+++ |.+|.+.+..+.+...++++.
T Consensus 144 e~l~~~a~~-~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 144 EKLAEQAKL-MESYGAQCVYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred HHHHHHHHH-HHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 455565664 56799999996 999999988888777777654
No 169
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.02 E-value=5.9e+02 Score=28.42 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
++..+++|+.+++.|+.|..-+-+......+. +. -.+++++.+
T Consensus 113 ~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~----------------~~---------------------~~~~~~~~~ 155 (274)
T cd07938 113 LERFEPVAELAKAAGLRVRGYVSTAFGCPYEG----------------EV---------------------PPERVAEVA 155 (274)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeEecCCCCC----------------CC---------------------CHHHHHHHH
Confidence 56688889999999999988887765432100 00 024666777
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
+... ++|+|.+++ |.+|.+.+..+.+....|++..
T Consensus 156 ~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 156 ERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 7654 689999988 8999988888777777776543
No 170
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=23.56 E-value=1.8e+02 Score=31.40 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhhcCCEEEE
Q 002161 489 TIEFRRMVQALNHIGLHVVL 508 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIl 508 (958)
.++++++.+.+.++|++|++
T Consensus 192 ~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 192 SADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 45788888889999999974
No 171
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=23.36 E-value=37 Score=28.30 Aligned_cols=11 Identities=64% Similarity=1.793 Sum_probs=6.0
Q ss_pred cCCcceeeccc
Q 002161 51 VHPRFRCCCCC 61 (958)
Q Consensus 51 ~~~~~~~~~~~ 61 (958)
|-|---|||||
T Consensus 21 vapggcccccc 31 (56)
T TIGR03602 21 VAPGGCCCCCC 31 (56)
T ss_pred ecCCCeEEEec
Confidence 55665555544
No 172
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=23.35 E-value=3.3e+02 Score=28.86 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=44.2
Q ss_pred CccEEeCCeEEEEEEcCC--CCeEEEEEecCCCCCCCceEEeeccCCCEEEEEeCC----CCCCcEEEEEEEEe
Q 002161 210 LGALYAEETVSLYLWAPT--AQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPK----SWEGCYYVYEVSVY 277 (958)
Q Consensus 210 LGa~~~~~~v~F~lWAPt--A~~V~L~ly~~~~~~~~~~~~~M~~~~GvWsv~~~~----~~~G~~Y~y~v~~~ 277 (958)
+|-+.. ...+|-++-|. +..+++.|.+......-...+++....|+-++++|. ...|+.|++.+...
T Consensus 28 ~g~T~~-~~PTf~~YvP~~~~~~~eF~L~d~~~~~iy~~~~~l~~~~GIv~i~LP~~~~~Le~gk~Y~W~~~l~ 100 (189)
T PF06051_consen 28 VGLTVS-EHPTFWFYVPYTSAETVEFVLQDEQGNPIYQTTFPLPQQPGIVSITLPEDQPPLEVGKTYRWYFSLI 100 (189)
T ss_pred cccccC-CCCEEEEEecCCCCcceEEEEecCCCCEEeEEEEecCCCCCEEEEECCCCCCCCCCCCeEEEEEEEE
Confidence 555544 45788888775 445666777665321111244556788999999993 35799999999753
No 173
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=23.29 E-value=2.1e+02 Score=26.74 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=35.0
Q ss_pred eEEEEEEcCCC---CeEEEEE-ecCCCCCCCceEEee-ccCCCEEEEEeCCCCC--CcEEEEEEE
Q 002161 218 TVSLYLWAPTA---QSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWE--GCYYVYEVS 275 (958)
Q Consensus 218 ~v~F~lWAPtA---~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvWsv~~~~~~~--G~~Y~y~v~ 275 (958)
.|+|+|-.|.. ++|.|+- -..-..+.+...++| ......|++.++-... -..|+|-+.
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 37899999853 4566551 111122344567788 4566889988764433 245777764
No 174
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=22.94 E-value=1e+02 Score=36.25 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEeeeccccCC-CCCCCCCccCCCCC
Q 002161 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGS-GPFDDNSVLDKVVP 532 (958)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDVVyNHt~~~-g~~~~~svldk~vP 532 (958)
+-++++...+|+.||-||-|=||.|+.-+ -|+.+...|-.+||
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP 262 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP 262 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc
Confidence 46999999999999999999999998743 33333333444433
No 175
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.63 E-value=3.6e+02 Score=28.83 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
++.++++|+.++++|+.| .++-+..+ + ++ .+++.+.+
T Consensus 107 ~~~~~~~v~~ak~~g~~v----~~~~~~~~------------------~-----------------~~----~~~~~~~~ 143 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV----AFGCEDAS------------------R-----------------TD----PEELLELA 143 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE----EEEETTTG------------------G-----------------SS----HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCce----EeCccccc------------------c-----------------cc----HHHHHHHH
Confidence 678999999999999999 33322100 0 00 13555555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhcc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLTK 605 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~~ 605 (958)
+. +.++|+|.+++ |.+|.+.+..+.+..+.+++..+
T Consensus 144 ~~-~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 144 EA-LAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp HH-HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred HH-HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 54 55679999997 79999999988888888887664
No 176
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.38 E-value=2.3e+02 Score=33.10 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHHHHH
Q 002161 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (958)
Q Consensus 492 fr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl~~W 571 (958)
..+||+.+|++||+|+.=-|=+ +++ .+. .|++|.+...+- .+. ..-|.+-+..+
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~----~~~-----~~~--~~~~~~~~~~~~----------~~~-----~~~~~~~~~~~ 333 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLER----SGP-----LAS--GGGWYYQTIEDV----------INN-----DGDMYNVLDVL 333 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeec----Ccc-----ccc--Cccccccccccc----------ccc-----cccHHHHHHHH
Confidence 4689999999999998644422 111 122 365665531110 001 12244445667
Q ss_pred HHhCCccEEEEecC
Q 002161 572 AVNYKVDGFRFDLM 585 (958)
Q Consensus 572 ~~ey~IDGFRfDl~ 585 (958)
+++.||||+=-|-.
T Consensus 334 ~~~~GvDGvftD~p 347 (356)
T cd08560 334 ARDVGILGIFSDWP 347 (356)
T ss_pred HHhcCCCEEEccCC
Confidence 77899999977754
No 177
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.86 E-value=5.3e+02 Score=29.71 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhh
Q 002161 562 RLIIDDLLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (958)
Q Consensus 562 k~iiDsl~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i 603 (958)
+++.+.++ .+.+||+|.+.+ |.+|.+.+..+.+...++++.
T Consensus 143 e~l~~~a~-~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 143 EKLAEQAK-LMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred HHHHHHHH-HHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 35555555 467899999987 999999988888777777654
No 178
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=21.81 E-value=3e+02 Score=31.61 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=33.0
Q ss_pred ceEEEEEccccccCCCCCCCCCCccccceeccchhhhhhHHHHHHcCCceEEeCccc
Q 002161 335 ISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTF 391 (958)
Q Consensus 335 ~vIYElHVrdFs~~d~s~~~~~rGty~g~tek~s~~i~hL~~L~~lGvT~I~LlPvf 391 (958)
--||=++|.+=......+ ....|-|.==. ...+++++.+.++||++|-|-|+-
T Consensus 22 dlI~PlFV~eg~~~~~~I-~smPG~~r~s~---d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (320)
T cd04824 22 NLIYPIFITDNPDAKQPI-DSLPGINRYGV---NRLEEFLRPLVAKGLRSVILFGVP 74 (320)
T ss_pred HceeeEEEecCCCCcccc-CCCCCceeeCH---HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 457888887632221111 12345543111 245788999999999999999994
No 179
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.47 E-value=5.9e+02 Score=28.57 Aligned_cols=76 Identities=8% Similarity=0.088 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
-+++++++|+.+++.|++|.+.+- +.+. .| |.+ ..++.+.
T Consensus 113 ~l~~~~~~i~~a~~~G~~v~~~~~--d~~~----------------~~-r~~---------------------~~~~~~~ 152 (280)
T cd07945 113 HFADIREVIEYAIKNGIEVNIYLE--DWSN----------------GM-RDS---------------------PDYVFQL 152 (280)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEE--eCCC----------------CC-cCC---------------------HHHHHHH
Confidence 377899999999999998776553 2210 01 111 1467777
Q ss_pred HHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 568 LLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 568 l~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
++... ++|+|-+++ |.+|...+..+.+....|++..
T Consensus 153 ~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 153 VDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhC
Confidence 77754 689999887 9999998888777777776543
No 180
>PF15394 DUF4616: Domain of unknown function (DUF4616)
Probab=21.40 E-value=84 Score=36.57 Aligned_cols=28 Identities=32% Similarity=0.774 Sum_probs=15.2
Q ss_pred eeeeeecccCCcceeecccCCCCCcccc
Q 002161 43 ATFFYRESVHPRFRCCCCCSSSSSSSSS 70 (958)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (958)
||..|.-.---.-+||||-..+-++...
T Consensus 4 ATILFsPP~g~eakcccCaCKse~~~~~ 31 (537)
T PF15394_consen 4 ATILFSPPNGSEAKCCCCACKSEPSGGS 31 (537)
T ss_pred eeEEecCCCCCccceeeeeccCCCCCCC
Confidence 4444443333456888886655555444
No 181
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=21.36 E-value=1.6e+02 Score=34.66 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhcCCEEEEEe
Q 002161 491 EFRRMVQALNHIGLHVVLDV 510 (958)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDV 510 (958)
-+.+.|+.+.++||+|++|+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEe
Confidence 45666999999999999995
No 182
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=21.27 E-value=1.9e+02 Score=27.16 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred EEEEEEcCCC--CeEEEEEec-CCCCCCCceEEee-ccCCCEEEEEeCCC-CCCcEEEEEEE
Q 002161 219 VSLYLWAPTA--QSVSACIYR-DPLGGNPLEVVQL-KENDGVWSIKGPKS-WEGCYYVYEVS 275 (958)
Q Consensus 219 v~F~lWAPtA--~~V~L~ly~-~~~~~~~~~~~~M-~~~~GvWsv~~~~~-~~G~~Y~y~v~ 275 (958)
++|++-+++. ++|.|+--. .-..+.+...++| ...+..|++++... .....|+|-+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEEE
Confidence 6888888876 556554211 1122234566788 45567898877533 23355777663
No 183
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.10 E-value=4.8e+02 Score=30.42 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDs 567 (958)
-+++++++|+.+++.|++|..-+-+--. .| |..+.+ .+++++.
T Consensus 160 ~l~~~~~~v~~Ak~~Gl~v~~~is~~fg---~p-------------~~~r~~---------------------~~~l~~~ 202 (347)
T PLN02746 160 SLVRYREVALAAKKHSIPVRGYVSCVVG---CP-------------IEGPVP---------------------PSKVAYV 202 (347)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEeeec---CC-------------ccCCCC---------------------HHHHHHH
Confidence 3667889999999999998544322111 01 111111 2467777
Q ss_pred HHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 568 LLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 568 l~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
++..+ +.|+|-+++ |.+|...+..+.+..++|++..
T Consensus 203 ~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 203 AKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 77754 689998887 9999998888777777776543
No 184
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=2.6e+02 Score=32.04 Aligned_cols=26 Identities=19% Similarity=0.407 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeecc
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNH 514 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNH 514 (958)
++..-+|-+.+...||+|++|+-|-.
T Consensus 103 ~~k~ieiakRAk~~GmKVl~dFHYSD 128 (403)
T COG3867 103 LKKAIEIAKRAKNLGMKVLLDFHYSD 128 (403)
T ss_pred HHHHHHHHHHHHhcCcEEEeeccchh
Confidence 44455666778889999999998853
No 185
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.76 E-value=85 Score=35.33 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEee
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVV 511 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVV 511 (958)
.++|+|++.+-||++||.|.||.-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 588999999999999999999964
No 186
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.76 E-value=81 Score=30.05 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=24.2
Q ss_pred ceeccchhhhhhHHHHHHcCCceEEeCccccCCC
Q 002161 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAG 395 (958)
Q Consensus 362 g~tek~s~~i~hL~~L~~lGvT~I~LlPvfd~~~ 395 (958)
||.|..+..-+=|++|++.|++.|.|+|+|=++.
T Consensus 36 ~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G 69 (103)
T cd03413 36 GTVEGYPGLDDVLAKLKKAGIKKVTLMPLMLVAG 69 (103)
T ss_pred EEEcCCCCHHHHHHHHHHcCCCEEEEEehhheec
Confidence 3334223333457788899999999999997765
No 187
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.52 E-value=76 Score=35.83 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.1
Q ss_pred hHH-HHHHHHHHhhcCCEEEEEee
Q 002161 489 TIE-FRRMVQALNHIGLHVVLDVV 511 (958)
Q Consensus 489 i~E-fr~mV~alH~~Gi~VIlDVV 511 (958)
|+| .|+||+++++. |.||||+-
T Consensus 135 IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred HHHHHHHHHHHhcce-eEEEeecc
Confidence 655 79999999988 99999974
No 188
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.41 E-value=6.2e+02 Score=27.75 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
++.++++|+.++++|+.|. ++-+.. .+.+ .+++.+.+
T Consensus 109 ~~~~~~~i~~a~~~G~~v~----~~~~~~------------------~~~~---------------------~~~~~~~~ 145 (259)
T cd07939 109 LDQLRRLVGRAKDRGLFVS----VGAEDA------------------SRAD---------------------PDFLIEFA 145 (259)
T ss_pred HHHHHHHHHHHHHCCCeEE----EeeccC------------------CCCC---------------------HHHHHHHH
Confidence 5678999999999999876 332210 0100 14556656
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
+.. .++|+|.+++ |.+|.+.+..+.+....+++..
T Consensus 146 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 146 EVA-QEAGADRLRFADTVGILDPFTTYELIRRLRAAT 181 (259)
T ss_pred HHH-HHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 654 4689999998 8899998888777777776543
No 189
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.29 E-value=6.1e+02 Score=27.92 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCccccCCCcCCCCCCCHHHHHHHHHHH
Q 002161 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (958)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~iiDsl 568 (958)
+++++++|+.+++.|++|. |+-... + +. -.+++.+.+
T Consensus 113 ~~~~~~~i~~a~~~G~~v~----~~~~~~-~-----------------~~---------------------~~~~~~~~~ 149 (268)
T cd07940 113 LERAVEAVEYAKSHGLDVE----FSAEDA-T-----------------RT---------------------DLDFLIEVV 149 (268)
T ss_pred HHHHHHHHHHHHHcCCeEE----EeeecC-C-----------------CC---------------------CHHHHHHHH
Confidence 5778899999999999876 331100 0 00 024555555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002161 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (958)
Q Consensus 569 ~~W~~ey~IDGFRf-Dl~~~i~~~~~~~~~~al~~i~ 604 (958)
+.. .++|+|.+++ |.+|.+.+..+.+..+.+++..
T Consensus 150 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 150 EAA-IEAGATTINIPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred HHH-HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 554 4689999998 8889988888777777777644
No 190
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=20.19 E-value=3e+02 Score=30.59 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhhcCCEEEEEeeeccccCCCCCCCCCccCCCCCcceEecCCCCcccc-CCCcCCCCCCCHH
Q 002161 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH-STCMNNTASEHYM 559 (958)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~~svldk~vP~YY~r~~~~G~~~~-stc~~d~a~e~~m 559 (958)
.+.||-.||+.|.+.|++|++ |.-|+..+. +.|+|.+ .||. ..+.|.+.- .-.|.|-..|++.
T Consensus 55 A~~Ef~amve~L~~~GvdV~i---fddtg~~~T--PDsvFPN---NWFS-Th~~g~v~LyPM~~~nRRlER~~ 118 (318)
T COG4874 55 AMSEFNAMVEGLRQAGVDVVI---FDDTGQGET--PDSVFPN---NWFS-THEAGEVFLYPMACANRRLERPE 118 (318)
T ss_pred HHHHHHHHHHHHHhcCceEEE---eecCCCCCC--CcccCCC---cccc-cCcCCeEEEeeccCccccccchH
Confidence 367999999999999999853 555765432 3455543 3443 344455432 2345555555443
Done!