Query 002163
Match_columns 958
No_of_seqs 565 out of 5140
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 17:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-33 5.1E-38 350.8 29.8 155 639-829 450-604 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-33 3.9E-38 351.9 28.6 512 86-755 69-588 (968)
3 KOG4658 Apoptotic ATPase [Sign 100.0 6E-31 1.3E-35 308.7 14.4 232 2-270 432-677 (889)
4 PLN03210 Resistant to P. syrin 100.0 3.4E-29 7.3E-34 312.0 27.8 417 29-600 471-910 (1153)
5 KOG4194 Membrane glycoprotein 99.9 7.2E-24 1.6E-28 221.9 9.4 179 82-273 48-233 (873)
6 KOG4194 Membrane glycoprotein 99.9 1.2E-22 2.7E-27 212.7 6.2 339 85-449 77-431 (873)
7 KOG0618 Serine/threonine phosp 99.9 7.7E-24 1.7E-28 234.0 -5.0 439 91-657 3-467 (1081)
8 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.2E-25 234.9 23.2 342 84-485 556-909 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 1E-24 2.2E-29 218.4 -15.3 255 88-362 47-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 1.3E-24 2.7E-29 217.7 -15.3 474 107-652 44-539 (565)
11 KOG0618 Serine/threonine phosp 99.8 6.1E-23 1.3E-27 227.0 -6.4 464 88-654 23-489 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 1.5E-22 3.2E-27 213.2 -4.8 317 84-446 53-375 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 4.6E-22 1E-26 209.5 -5.4 363 85-513 6-378 (1255)
14 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 154.9 -5.3 167 98-280 23-192 (264)
15 KOG0617 Ras suppressor protein 99.6 3.2E-17 6.9E-22 145.5 -4.6 162 84-261 31-196 (264)
16 KOG4237 Extracellular matrix p 99.5 1.7E-15 3.6E-20 152.8 -3.9 138 97-237 57-199 (498)
17 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.7E-17 150.3 15.7 157 88-278 203-359 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 3.2E-12 7E-17 148.0 16.5 247 71-389 208-454 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 2.3E-12 5.1E-17 150.3 13.5 135 88-237 180-315 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.4 5.8E-13 1.3E-17 157.8 7.1 129 130-272 520-653 (889)
21 PRK15370 E3 ubiquitin-protein 99.4 2.6E-12 5.7E-17 149.9 11.8 193 71-294 185-378 (754)
22 KOG4341 F-box protein containi 99.3 1.3E-14 2.9E-19 147.7 -7.5 301 557-917 138-441 (483)
23 KOG4237 Extracellular matrix p 99.2 5.1E-13 1.1E-17 135.1 -1.9 139 72-212 54-199 (498)
24 KOG4341 F-box protein containi 99.2 1.8E-13 3.9E-18 139.7 -6.7 142 712-860 292-441 (483)
25 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 110.3 4.4 131 130-270 16-149 (175)
26 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 107.9 5.9 122 140-274 4-126 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3E-16 130.7 -3.9 177 86-280 75-253 (722)
28 cd00116 LRR_RI Leucine-rich re 99.0 3E-10 6.4E-15 123.7 4.8 177 87-272 24-232 (319)
29 KOG0532 Leucine-rich repeat (L 99.0 2.6E-11 5.6E-16 128.6 -4.9 187 90-294 54-245 (722)
30 KOG1259 Nischarin, modulator o 98.9 1.1E-10 2.4E-15 113.8 -0.5 182 84-278 212-416 (490)
31 cd00116 LRR_RI Leucine-rich re 98.9 6.9E-10 1.5E-14 120.8 5.5 173 87-273 52-262 (319)
32 KOG1259 Nischarin, modulator o 98.8 2.9E-10 6.4E-15 110.9 -1.8 127 108-239 284-412 (490)
33 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 113.5 5.1 188 91-294 98-288 (394)
34 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.3E-13 112.6 5.6 184 112-311 97-285 (394)
35 KOG3207 Beta-tubulin folding c 98.5 2.3E-08 5E-13 103.5 0.3 189 84-278 119-318 (505)
36 KOG3207 Beta-tubulin folding c 98.4 1.2E-07 2.7E-12 98.2 2.4 180 83-273 143-338 (505)
37 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.4E-12 72.2 3.0 59 108-167 1-60 (61)
38 PRK15386 type III secretion pr 98.4 8.6E-07 1.9E-11 94.4 7.7 59 713-783 51-110 (426)
39 PLN03150 hypothetical protein; 98.3 2.5E-06 5.4E-11 100.0 9.5 104 134-238 419-527 (623)
40 PF13855 LRR_8: Leucine rich r 98.3 5.9E-07 1.3E-11 69.6 2.9 57 179-236 2-59 (61)
41 PRK15386 type III secretion pr 98.2 3.1E-06 6.6E-11 90.3 8.0 58 557-630 52-109 (426)
42 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 98.9 8.6 104 157-272 419-526 (623)
43 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3.1E-12 105.6 -2.9 104 106-212 93-197 (414)
44 KOG2120 SCF ubiquitin ligase, 98.2 6.4E-08 1.4E-12 95.0 -5.2 42 320-363 308-350 (419)
45 KOG2120 SCF ubiquitin ligase, 98.2 6.5E-08 1.4E-12 95.0 -5.2 188 732-933 204-394 (419)
46 KOG0531 Protein phosphatase 1, 98.2 1.5E-07 3.2E-12 105.4 -3.7 129 106-239 70-199 (414)
47 KOG3665 ZYG-1-like serine/thre 98.1 4.9E-07 1.1E-11 105.2 0.4 131 108-239 122-263 (699)
48 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6E-11 59.9 3.5 41 133-173 1-41 (44)
49 PF12799 LRR_4: Leucine Rich r 98.0 8E-06 1.7E-10 57.6 4.2 41 178-219 1-41 (44)
50 KOG1947 Leucine rich repeat pr 97.9 3.8E-07 8.3E-12 105.7 -5.5 96 556-655 187-283 (482)
51 KOG3665 ZYG-1-like serine/thre 97.9 7E-06 1.5E-10 95.7 4.1 101 133-236 122-230 (699)
52 KOG1859 Leucine-rich repeat pr 97.9 1.5E-07 3.2E-12 103.3 -9.5 126 134-273 165-291 (1096)
53 KOG1909 Ran GTPase-activating 97.8 4.2E-06 9E-11 84.8 0.4 86 106-191 28-133 (382)
54 KOG1947 Leucine rich repeat pr 97.8 2.3E-06 5E-11 99.2 -2.3 40 878-917 403-442 (482)
55 KOG1909 Ran GTPase-activating 97.7 4.2E-06 9E-11 84.8 -1.3 40 106-145 90-132 (382)
56 KOG1859 Leucine-rich repeat pr 97.6 8.6E-07 1.9E-11 97.5 -8.7 124 85-212 163-290 (1096)
57 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.5E-09 67.8 5.3 102 108-212 42-151 (233)
58 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.1E-09 66.8 5.1 102 158-270 44-149 (233)
59 KOG2982 Uncharacterized conser 97.3 0.00013 2.9E-09 72.3 2.6 56 135-190 47-109 (418)
60 KOG4579 Leucine-rich repeat (L 97.2 2.4E-05 5.1E-10 68.3 -2.9 110 109-220 28-141 (177)
61 COG5238 RNA1 Ran GTPase-activa 97.1 0.00043 9.4E-09 67.8 3.4 98 323-423 212-318 (388)
62 KOG2982 Uncharacterized conser 97.0 0.00064 1.4E-08 67.6 3.5 94 557-658 173-266 (418)
63 KOG4579 Leucine-rich repeat (L 96.9 6.8E-05 1.5E-09 65.5 -2.9 90 106-196 51-141 (177)
64 KOG2123 Uncharacterized conser 96.9 5E-05 1.1E-09 74.4 -4.9 107 154-268 17-124 (388)
65 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 65.3 2.9 106 156-272 43-154 (260)
66 KOG2739 Leucine-rich acidic nu 96.2 0.0022 4.8E-08 63.3 1.8 84 129-212 61-154 (260)
67 PF13306 LRR_5: Leucine rich r 95.5 0.036 7.8E-07 50.6 6.8 40 124-164 26-66 (129)
68 PF00560 LRR_1: Leucine Rich R 95.5 0.0043 9.4E-08 36.2 0.4 21 179-199 1-21 (22)
69 KOG2123 Uncharacterized conser 95.4 0.0011 2.4E-08 65.3 -3.8 61 107-171 18-78 (388)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.0086 1.9E-07 34.9 0.9 21 134-154 1-21 (22)
71 PF13306 LRR_5: Leucine rich r 95.2 0.054 1.2E-06 49.4 6.7 106 124-235 3-112 (129)
72 COG5238 RNA1 Ran GTPase-activa 95.0 0.057 1.2E-06 53.5 6.2 83 130-212 27-131 (388)
73 KOG3864 Uncharacterized conser 93.8 0.012 2.5E-07 55.8 -1.2 69 376-446 121-189 (221)
74 KOG3864 Uncharacterized conser 93.7 0.0097 2.1E-07 56.4 -1.8 65 791-856 121-187 (221)
75 PF13504 LRR_7: Leucine rich r 93.4 0.048 1.1E-06 29.4 1.3 16 179-194 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 92.3 0.083 1.8E-06 28.5 1.3 16 134-149 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 91.5 0.005 1.1E-07 59.2 -6.9 84 129-212 38-122 (326)
78 KOG0473 Leucine-rich repeat pr 91.1 0.0061 1.3E-07 58.6 -6.7 83 152-236 38-121 (326)
79 smart00370 LRR Leucine-rich re 89.2 0.35 7.6E-06 29.5 2.2 19 178-196 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 89.2 0.35 7.6E-06 29.5 2.2 19 178-196 2-20 (26)
81 smart00370 LRR Leucine-rich re 85.3 0.82 1.8E-05 27.8 2.2 22 200-222 1-22 (26)
82 smart00369 LRR_TYP Leucine-ric 85.3 0.82 1.8E-05 27.8 2.2 22 200-222 1-22 (26)
83 smart00367 LRR_CC Leucine-rich 82.0 0.84 1.8E-05 27.8 1.3 17 901-917 1-17 (26)
84 smart00367 LRR_CC Leucine-rich 81.1 0.88 1.9E-05 27.7 1.2 18 818-835 1-18 (26)
85 smart00364 LRR_BAC Leucine-ric 66.4 3.8 8.2E-05 24.9 1.2 17 179-195 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 66.0 5.5 0.00012 24.3 1.9 12 157-168 3-14 (26)
87 PF13516 LRR_6: Leucine Rich r 48.6 10 0.00022 22.3 1.1 12 156-167 2-13 (24)
88 KOG4308 LRR-containing protein 45.1 0.61 1.3E-05 52.7 -8.4 177 88-273 89-302 (478)
89 smart00368 LRR_RI Leucine rich 42.2 21 0.00045 22.2 1.8 13 157-169 3-15 (28)
90 KOG4308 LRR-containing protein 25.7 4.2 9.1E-05 46.1 -5.8 152 86-239 115-303 (478)
91 PF14162 YozD: YozD-like prote 24.8 73 0.0016 22.8 2.3 19 19-40 10-28 (57)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-33 Score=350.79 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=90.6
Q ss_pred CCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeEEeeccchhhhhhhccCCccccccccE
Q 002163 639 KWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKN 718 (958)
Q Consensus 639 ~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 718 (958)
.+++|+.|++++|.-...+|.. ...++|+.|++++|......+..+ ..+++|+.
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~------------------------~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~ 503 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDS------------------------FGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQ 503 (968)
T ss_pred cCCCCcEEECcCceeeeecCcc------------------------cccccceEEECcCCccCCccChhh--hhhhccCE
Confidence 3567777777776544444311 123567777777766554332222 23567778
Q ss_pred EEeeeCCCCcccHHHHhhcCCCcEEEEEcceeeeeccchhhhhhhhhccccceEEecCccCccccccCCCCCccccCCcc
Q 002163 719 LEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE 798 (958)
Q Consensus 719 L~i~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~ 798 (958)
|++++|.........+.++++|+.|+|+.|.+....+. .+..+++|+.|+++++.-...++. .+..+++|+
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~ 574 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-----SFSEMPVLSQLDLSQNQLSGEIPK----NLGNVESLV 574 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh-----hHhCcccCCEEECCCCcccccCCh----hHhcCcccC
Confidence 88877766533334566777888888876666655443 455677777777777665444433 255667777
Q ss_pred EEEEeccCCcccccCCccccCcccEEEEccC
Q 002163 799 SLEVWWCENLINLVPSSASFKNLTTLELWYC 829 (958)
Q Consensus 799 ~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C 829 (958)
.|++++|+-...+|.. +.+..+....+.+.
T Consensus 575 ~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n 604 (968)
T PLN00113 575 QVNISHNHLHGSLPST-GAFLAINASAVAGN 604 (968)
T ss_pred EEeccCCcceeeCCCc-chhcccChhhhcCC
Confidence 7777777765556532 33344444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-33 Score=351.86 Aligned_cols=512 Identities=18% Similarity=0.159 Sum_probs=283.2
Q ss_pred CCcCEEEeecCCCeec-CCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc-cCCcccCCCCCCCEEE
Q 002163 86 KNCPTIFLHDCKHWEV-PEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQTLC 162 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~ 162 (958)
.+++.|++.++.+... +..+ .+++|++|++++|.+...+|..+|..+++||+|++++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4678888887776533 3323 67888888888888777788887778888888888888876 4453 5678888888
Q ss_pred ccCCCCCC--ccccCCCCCccEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 163 LDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 163 L~~~~l~~--l~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 88888762 367888888888888888765 67888888888888888888744456766 788888888888887665
Q ss_pred ccccccccCCCcCChhhhcCCCCCCEEEeeccCCc-cCCCccccccccEEEEEecCccccccccCCceEEEecccccChH
Q 002163 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (958)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (958)
...+..++++++|++|++++|.+. .+|..
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------------------------------------- 255 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------------------------------------- 255 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCceeccccChh---------------------------------------
Confidence 345667888888888888877643 22322
Q ss_pred HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceec
Q 002163 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (958)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (958)
+..+++|+.|+++++......+..+ ..+++|++|++++|.-...++ ..+..+++|+.|++.++.-....
T Consensus 256 --l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~-- 324 (968)
T PLN00113 256 --LGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIP-----ELVIQLQNLEILHLFSNNFTGKI-- 324 (968)
T ss_pred --HhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCC-----hhHcCCCCCcEEECCCCccCCcC--
Confidence 2234455555554432211111222 445555566555543111000 11233444555544442211110
Q ss_pred cCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCC
Q 002163 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (958)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (958)
......+++|+.|++.+|.-...+| ..+..+++|+.|+++++.-...++. ....+++|+.|.+.+
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE------------GLCSSGNLFKLILFS 389 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh------------hHhCcCCCCEEECcC
Confidence 0112245566666666544322332 2245556666666655432222220 112334455555544
Q ss_pred CcccccccccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCC
Q 002163 479 LPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQN 558 (958)
Q Consensus 479 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~ 558 (958)
++-...++. .+. .+++|+.|++++|.++...+..+. .+++
T Consensus 390 n~l~~~~p~----~~~----------------------------------~~~~L~~L~L~~n~l~~~~p~~~~--~l~~ 429 (968)
T PLN00113 390 NSLEGEIPK----SLG----------------------------------ACRSLRRVRLQDNSFSGELPSEFT--KLPL 429 (968)
T ss_pred CEecccCCH----HHh----------------------------------CCCCCCEEECcCCEeeeECChhHh--cCCC
Confidence 432111111 122 244555555555554333222222 2555
Q ss_pred CcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCccc
Q 002163 559 LTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTS 638 (958)
Q Consensus 559 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 638 (958)
|+.|+++++ .++...+. .+..+++|+.|++++|.....++... ..++|+.|++++|.-...++... .
T Consensus 430 L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~---------~~~~L~~L~ls~n~l~~~~~~~~--~ 496 (968)
T PLN00113 430 VYFLDISNN-NLQGRINS-RKWDMPSLQMLSLARNKFFGGLPDSF---------GSKRLENLDLSRNQFSGAVPRKL--G 496 (968)
T ss_pred CCEEECcCC-cccCccCh-hhccCCCCcEEECcCceeeeecCccc---------ccccceEEECcCCccCCccChhh--h
Confidence 666666653 34443232 23445666666666665332222211 23456666666554322222211 1
Q ss_pred CCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeEEeeccchhhhhhhccCCccccccccE
Q 002163 639 KWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKN 718 (958)
Q Consensus 639 ~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 718 (958)
.+++|+.|++++|.-...+|... ..+++|++|++++|......+..+ ..+++|+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~-----------------------~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~ 551 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDEL-----------------------SSCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQ 551 (968)
T ss_pred hhhccCEEECcCCcceeeCChHH-----------------------cCccCCCEEECCCCcccccCChhH--hCcccCCE
Confidence 35667777777664333443211 345667777777766654433222 23566777
Q ss_pred EEeeeCCCC-cccHHHHhhcCCCcEEEEEcceeeeecc
Q 002163 719 LEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFS 755 (958)
Q Consensus 719 L~i~~c~~~-~~~~~~l~~l~~L~~L~i~c~~l~~~~~ 755 (958)
|++++|... .+| ..+..+++|+.|+++.|.+...+|
T Consensus 552 L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 777777665 333 345667777777777545554333
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=6e-31 Score=308.69 Aligned_cols=232 Identities=25% Similarity=0.361 Sum_probs=177.4
Q ss_pred cccceeccccccCC---cccHHHHHHHHHHHHHHHhhCCccccCC---CCCcEEechhHHHHHHHHHh-----cCCceEE
Q 002163 2 DLLKYGTGLHIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP---TEDWIRMHDLVREVAISIAS-----RDRHVFM 70 (958)
Q Consensus 2 ~Li~~WiaeG~i~~---~~~~e~~~~~~~~~~~~L~~~~l~q~~~---~~~~~~mHDli~dla~~i~~-----~e~~~~~ 70 (958)
+||.||||||||++ +.+.++.|+.| +.+||+|||++..+ +..+|+|||+|||||.++|+ +|+.+
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~---i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-- 506 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDY---IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-- 506 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHH---HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE--
Confidence 58999999999986 44667777777 99999999999754 45899999999999999999 66633
Q ss_pred EecC-cccCCCccccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcC-CCCcChhhhcCCCCCcEEEeeCc-cCcc
Q 002163 71 LRND-IQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNM-QFLS 147 (958)
Q Consensus 71 ~~~~-~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~-~i~~ 147 (958)
+.++ +....+....+..+|++++.++.+..++....+++|++|.+.+|.. ...++..+|..|+.||||||++| .+..
T Consensus 507 v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 507 VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 3433 3333445556789999999999999999888899999999998863 44788888999999999999976 4678
Q ss_pred CCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCC
Q 002163 148 LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (958)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (958)
+|++|+.|.|||||+++++ .+..+|.++++|++|.||++..+..+..+| ++...|.+
T Consensus 587 LP~~I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~ 643 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT----------------------GISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQS 643 (889)
T ss_pred CChHHhhhhhhhcccccCC----------------------CccccchHHHHHHhhheecccccccccccc-chhhhccc
Confidence 8988887777777776665 566777788888888888887776555554 43556888
Q ss_pred CCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeec
Q 002163 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (958)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (958)
||+|.+..... ..+.....++.++.+|+.+.+..
T Consensus 644 Lr~L~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 644 LRVLRLPRSAL---------SNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccEEEeecccc---------ccchhhHHhhhcccchhhheeec
Confidence 88887765431 12234566666666676666643
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=3.4e-29 Score=311.96 Aligned_cols=417 Identities=24% Similarity=0.298 Sum_probs=266.0
Q ss_pred HHHHHhhCCccccCCCCCcEEechhHHHHHHHHHhcCCceEEEecCcccCCCcccc---------CCCcCEEEeecCCCe
Q 002163 29 LVHKLKDYCLLLDGPTEDWIRMHDLVREVAISIASRDRHVFMLRNDIQIEWPVADM---------LKNCPTIFLHDCKHW 99 (958)
Q Consensus 29 ~~~~L~~~~l~q~~~~~~~~~mHDli~dla~~i~~~e~~~~~~~~~~~~~~~~~~~---------~~~~r~l~l~~~~~~ 99 (958)
.++.|+++||++..+ +.++|||++||||+.+++++.. ..+.+.+.|...++ ..+++.+++....+
T Consensus 471 ~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~- 544 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI- 544 (1153)
T ss_pred ChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc-
Confidence 389999999998643 5799999999999999988741 12223233332111 12233333322111
Q ss_pred ecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccC------c-cCCcccCCCC-CCCEEEccCCCCCCc
Q 002163 100 EVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF------L-SLPSLFHLPL-NLQTLCLDRCALGDI 171 (958)
Q Consensus 100 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i------~-~lp~~i~~l~-~Lr~L~L~~~~l~~l 171 (958)
+. ..+....|.+|++|++|.+..+.. . .+|..+..++ +||+|.+.++.++.+
T Consensus 545 -----------~~---------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 545 -----------DE---------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM 604 (1153)
T ss_pred -----------ce---------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC
Confidence 11 134556678888888888865532 1 4676676664 588888888887766
Q ss_pred cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCc
Q 002163 172 AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSN 251 (958)
Q Consensus 172 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (958)
+.-....+|++|++.++.+..+|.++..+++|++|+++++..++.+|. ++.+++|++|++.+|... .
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~ 671 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------V 671 (1153)
T ss_pred CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------c
Confidence 444467888888888888888888888888888888888776778875 788888888888877543 2
Q ss_pred CChhhhcCCCCCCEEEeeccC-CccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEE
Q 002163 252 ASLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEEL 330 (958)
Q Consensus 252 ~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L 330 (958)
..+..++.+++|+.|++++|. +..+|..+. +++|+.|
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~------------------------------------------l~sL~~L 709 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGIN------------------------------------------LKSLYRL 709 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcCC------------------------------------------CCCCCEE
Confidence 356677888888888888764 444544332 3355555
Q ss_pred EccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceecc-----CCCchh
Q 002163 331 YLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLG-----QLRAES 405 (958)
Q Consensus 331 ~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~~ 405 (958)
.+++|..... +|. ..++|++|++.++. ++.+ +....+++|+.|.+.++....-+ .. ......
T Consensus 710 ~Lsgc~~L~~-~p~----~~~nL~~L~L~~n~-i~~l------P~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~ 776 (1153)
T PLN03210 710 NLSGCSRLKS-FPD----ISTNISWLDLDETA-IEEF------PSNLRLENLDELILCEMKSEKLW-ERVQPLTPLMTML 776 (1153)
T ss_pred eCCCCCCccc-ccc----ccCCcCeeecCCCc-cccc------cccccccccccccccccchhhcc-ccccccchhhhhc
Confidence 5555443322 111 13456666665553 2222 11223555666665553321110 00 001113
Q ss_pred ccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccc
Q 002163 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (958)
Q Consensus 406 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 485 (958)
+++|+.|.+.+|+.+..+|. .++++++|+.|++++|..++.++. ...+++|++|++++|..+..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccc
Confidence 46777888887777777664 366777777777777777776662 124666777777776665544
Q ss_pred cccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEe
Q 002163 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (958)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (958)
+. ..++|+.|+++++.++.+... + ..+++|+.|+++
T Consensus 842 p~-----------------------------------------~~~nL~~L~Ls~n~i~~iP~s-i--~~l~~L~~L~L~ 877 (1153)
T PLN03210 842 PD-----------------------------------------ISTNISDLNLSRTGIEEVPWW-I--EKFSNLSFLDMN 877 (1153)
T ss_pred cc-----------------------------------------cccccCEeECCCCCCccChHH-H--hcCCCCCEEECC
Confidence 32 134677777777776654332 1 247899999999
Q ss_pred cCCCcccccchhhhhhcccCCEEEEecccccccee
Q 002163 566 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIV 600 (958)
Q Consensus 566 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 600 (958)
+|++++.+++ . ...+++|+.+++++|.+++.+.
T Consensus 878 ~C~~L~~l~~-~-~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 878 GCNNLQRVSL-N-ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCcCccCc-c-cccccCCCeeecCCCccccccc
Confidence 9999999843 3 5678899999999999887653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=7.2e-24 Score=221.86 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=140.0
Q ss_pred cccCCCcCEEEeecCCCeecCCC----CCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCC
Q 002163 82 ADMLKNCPTIFLHDCKHWEVPEG----LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLN 157 (958)
Q Consensus 82 ~~~~~~~r~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 157 (958)
.....+.+-++.+.+.++.+... .-.+..++|++++|.+. ++...+|.++++|+.+++..|.++.+|...+...|
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 34455666777777666554221 12366788999998877 67777789999999999999999999987777788
Q ss_pred CCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEee
Q 002163 158 LQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (958)
Q Consensus 158 Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (958)
|+.|+|.+|.|+.+ +.+..++.||.|||+.|.|.++|. .+.+-.++++|+|++|. ++.+..+.+..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 99999999998877 678888999999999998888873 56677788888888887 888877778888888888888
Q ss_pred CCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
.|.+. ...+..+++|++|+.|++..|.+
T Consensus 206 rNrit-----------tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 206 RNRIT-----------TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred cCccc-----------ccCHHHhhhcchhhhhhccccce
Confidence 88776 34466777888888888877764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-22 Score=212.66 Aligned_cols=339 Identities=19% Similarity=0.242 Sum_probs=168.8
Q ss_pred CCCcCEEEeecCCCeecCCC--CCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEE
Q 002163 85 LKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTL 161 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L 161 (958)
+...+.|++++|.+.++... .++++|+.+.+..|... .+|.. -....+|..|+|.+|.|.++. +++..++.||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 33445555555554433221 24455555555444443 33321 122233444444444444332 234444444444
Q ss_pred EccCCCCCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcc
Q 002163 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (958)
||+.|.|+.+ +++..=.++++|+|++|.|+.+- ..|..+.+|-+|.|++|. ++.+|...+.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 4444444432 34444444444444444444443 234444444444444444 4444444444444444444444433
Q ss_pred cccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEEEEEecCcc----ccccccCCceEEEecc
Q 002163 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEW----DWSGNYKNKRVLKLKL 312 (958)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~----~~~~~~~~l~~l~l~~ 312 (958)
. ......+..|.+|+.|.+..|++..+..++ .+.+++.+++..+.+- .|.-....++.+.+..
T Consensus 234 r-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 234 R-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred e-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 2 001123334444444444444444444443 3444444444433321 1322333333332222
Q ss_pred cc-cChHH-HHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhcccc
Q 002163 313 YT-SNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (958)
Q Consensus 313 ~~-~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 390 (958)
+. ..+.. .....++|++|+|++ +.++. ++.-.+..+..|++|.++.+. +.++-+ ..+..+.+|++|++.+
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~-N~i~~-l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~- 374 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSS-NRITR-LDEGSFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRS- 374 (873)
T ss_pred hhhheeecchhhhcccceeEeccc-ccccc-CChhHHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcC-
Confidence 10 11111 234467899999987 33433 333344678888999998875 333211 3456678899999987
Q ss_pred ccccceeccC--CCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeecccccccc
Q 002163 391 IHLEKICLGQ--LRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEI 449 (958)
Q Consensus 391 ~~l~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 449 (958)
+.+. |+..+ .....++.|++|.+.| ++++.++. ..+.++++||+|++.+. .+..+
T Consensus 375 N~ls-~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 375 NELS-WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred CeEE-EEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCC-cceee
Confidence 4433 22211 2223589999999999 78888866 66889999999999874 34433
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.7e-24 Score=233.99 Aligned_cols=439 Identities=21% Similarity=0.255 Sum_probs=260.8
Q ss_pred EEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCC
Q 002163 91 IFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALG 169 (958)
Q Consensus 91 l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~ 169 (958)
+++++...+.+|..+ ....+..|++..|... ..|-.+..+.-+|++||+++|.+...|..|..+.+|+.|+++.|.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 455555666666554 3344777888777654 44555556666699999999999999999999999999999999988
Q ss_pred Cc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccC
Q 002163 170 DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (958)
Q Consensus 170 ~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (958)
.+ .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. ...+|.- +-.++.+..+..++| ..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~--------- 149 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK--------- 149 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh---------
Confidence 65 88899999999999999999999999999999999999998 8888865 778888888888777 21
Q ss_pred CCcCChhhhcCCCCCCEEEeeccCC-ccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccc
Q 002163 249 RSNASLQELKLLSHLTTLEIQICDA-MILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGI 327 (958)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L 327 (958)
...++... ++.+++..+.+ ..++.++ .+++.
T Consensus 150 -----~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~---------------------------------------- 181 (1081)
T KOG0618|consen 150 -----IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH---------------------------------------- 181 (1081)
T ss_pred -----hhhhcccc-chhhhhhhhhcccchhcch--hhhhe----------------------------------------
Confidence 22333333 55555554442 1222221 11111
Q ss_pred cEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhcc
Q 002163 328 EELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFY 407 (958)
Q Consensus 328 ~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 407 (958)
.|+|++.. .. .+....+++|+.|....+.-.... -.-++|+.|+..+++-.+ . .....-.
T Consensus 182 -~ldLr~N~-~~----~~dls~~~~l~~l~c~rn~ls~l~---------~~g~~l~~L~a~~n~l~~-~----~~~p~p~ 241 (1081)
T KOG0618|consen 182 -QLDLRYNE-ME----VLDLSNLANLEVLHCERNQLSELE---------ISGPSLTALYADHNPLTT-L----DVHPVPL 241 (1081)
T ss_pred -eeecccch-hh----hhhhhhccchhhhhhhhcccceEE---------ecCcchheeeeccCccee-e----ccccccc
Confidence 12222211 00 001123333333333332211100 012334444444432211 1 1111223
Q ss_pred CccEEEEecCCCcccccchhhhhccCCceEEEeeccc----------------------cccccccccccCCccCCccCc
Q 002163 408 KLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK----------------------NMKEIFTVGRENDVDCHEVDK 465 (958)
Q Consensus 408 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~----------------------~l~~i~~~~~~~~~~~~~~~~ 465 (958)
+|+.++++. .++..+| .++..+++|+.+.+.+.. .++.+++ ..
T Consensus 242 nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~------------~l 306 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLP--EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP------------FL 306 (1081)
T ss_pred cceeeecch-hhhhcch--HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC------------cc
Confidence 455555555 4445544 345555555555554421 2333331 22
Q ss_pred eeccccceEecCCCcccccccccccchhhcc-cccceecccCCCceeecccccCCccccccccccccccceeeccccccc
Q 002163 466 IEFSQLHSLTLKFLPQLTSFYSQVKTSAASQ-TRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE 544 (958)
Q Consensus 466 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 544 (958)
..+.+|++|++... ++.+++.. .+... ..|..+..+..+.-.. |.+ ....++.|+.|.+.+|.++
T Consensus 307 e~~~sL~tLdL~~N-~L~~lp~~---~l~v~~~~l~~ln~s~n~l~~l---------p~~-~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSN-NLPSLPDN---FLAVLNASLNTLNVSSNKLSTL---------PSY-EENNHAALQELYLANNHLT 372 (1081)
T ss_pred cccceeeeeeehhc-cccccchH---HHhhhhHHHHHHhhhhcccccc---------ccc-cchhhHHHHHHHHhcCccc
Confidence 34667777777643 33444331 01111 1133333333221111 111 2234778999999999977
Q ss_pred ccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCccccccccc
Q 002163 545 KIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWN 624 (958)
Q Consensus 545 ~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 624 (958)
+-....+. +++.||.|++++ +.|..+ |...+.++..||+|+++|+. ++.++.... .+++|+.|...+
T Consensus 373 d~c~p~l~--~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva--------~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 373 DSCFPVLV--NFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA--------NLGRLHTLRAHS 439 (1081)
T ss_pred ccchhhhc--cccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH--------hhhhhHHHhhcC
Confidence 65443443 489999999998 788887 87888999999999999998 888875322 566777777655
Q ss_pred CCccceecCCCcccCCCcccEEEEecCCcceee
Q 002163 625 LSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIF 657 (958)
Q Consensus 625 c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 657 (958)
..+..+|.. ..++.|+.+|++ |.+|+.+
T Consensus 440 -N~l~~fPe~---~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 440 -NQLLSFPEL---AQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred -Cceeechhh---hhcCcceEEecc-cchhhhh
Confidence 345566632 246778888884 5666543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.5e-20 Score=234.89 Aligned_cols=342 Identities=18% Similarity=0.268 Sum_probs=228.8
Q ss_pred cCCCcCEEEeecCCC-------eecCCCC-C-CCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCC
Q 002163 84 MLKNCPTIFLHDCKH-------WEVPEGL-E-YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL 154 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~-------~~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 154 (958)
...+++.|.+..+.. ..+|..+ . .++||.|.+.++... .+|..+ ...+|+.|+++++.+..+|..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccccccccc
Confidence 356788888865432 1345544 2 257999999888765 677654 578999999999999999999999
Q ss_pred CCCCCEEEccCCC-CCCccccCCCCCccEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEE
Q 002163 155 PLNLQTLCLDRCA-LGDIAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (958)
Q Consensus 155 l~~Lr~L~L~~~~-l~~l~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 232 (958)
+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..+..+|.+ + ++++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 9999999999886 677788999999999999998 68899999999999999999999889999986 3 899999999
Q ss_pred eeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecc
Q 002163 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKL 312 (958)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~ 312 (958)
+++|... ...+. ...+|+.|++.++.+..+|..+.+++|..|.+............
T Consensus 711 Lsgc~~L-----------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~---------- 766 (1153)
T PLN03210 711 LSGCSRL-----------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV---------- 766 (1153)
T ss_pred CCCCCCc-----------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccc----------
Confidence 9988533 11111 24678999999999888888776667776655321110000000
Q ss_pred cccChH-HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccc
Q 002163 313 YTSNVD-EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (958)
Q Consensus 313 ~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (958)
..+. .....+++|+.|++.++......+..+ +.+++|+.|++++|..++.++. ...+++|+.|++++|.
T Consensus 767 --~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~------~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 767 --QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT------GINLESLESLDLSGCS 836 (1153)
T ss_pred --cccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC------CCCccccCEEECCCCC
Confidence 0000 012234567777777665544433333 6677777777777766555432 1245666666666666
Q ss_pred cccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceecccc
Q 002163 392 HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQL 471 (958)
Q Consensus 392 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L 471 (958)
.+..+. ...++|+.|++.+ +.++.+|. .+..+++|+.|++.+|++++.++. ....+++|
T Consensus 837 ~L~~~p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~------------~~~~L~~L 895 (1153)
T PLN03210 837 RLRTFP------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL------------NISKLKHL 895 (1153)
T ss_pred cccccc------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc------------ccccccCC
Confidence 555431 1235666666666 34555543 355666666666666666665542 12345566
Q ss_pred ceEecCCCcccccc
Q 002163 472 HSLTLKFLPQLTSF 485 (958)
Q Consensus 472 ~~L~l~~c~~l~~~ 485 (958)
+.+.+.+|++++.+
T Consensus 896 ~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 896 ETVDFSDCGALTEA 909 (1153)
T ss_pred CeeecCCCcccccc
Confidence 66666666555443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1e-24 Score=218.39 Aligned_cols=255 Identities=24% Similarity=0.327 Sum_probs=130.5
Q ss_pred cCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (958)
+..+.+++|.++.+..+. .+..+.+|.+.+|... .+|+.+ +.+..+..|+.++|.+..+|+.++.+..|+.|+.+++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 334445555554444433 4555555555555544 344443 4555555555555555555555555555555555555
Q ss_pred CCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccc
Q 002163 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
.+..+ ++++.+..|+.|+..+|++.++|++++++.+|..|++.++. ++..|++.+ +++.|++|+...|-.
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L------- 195 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLL------- 195 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhh-------
Confidence 54433 55555555555555555555555555555555555555554 555554422 255555555433322
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCcc----ccccccCCceEEEecccc-cChHHH
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEW----DWSGNYKNKRVLKLKLYT-SNVDEV 320 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~~~l~~l~l~~~~-~~l~~~ 320 (958)
+..+.+++.+..|..|++..|.+..+|.--..+.|+.+++..+.+- +.......+..+.+.-+. .++|.-
T Consensus 196 -----~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 196 -----ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred -----hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence 1334455555555555555555544442223333444433322220 011122223333332221 455555
Q ss_pred HHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 321 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
...+++|++|++++ +.++..++.+ +++ .|+.|.+.|++
T Consensus 271 ~clLrsL~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence 66678888888888 4555555555 677 88888888886
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.3e-24 Score=217.73 Aligned_cols=474 Identities=18% Similarity=0.173 Sum_probs=301.9
Q ss_pred CCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEc
Q 002163 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSL 185 (958)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l 185 (958)
...+..+++++|... .+.++ ..++..|.||++++|.+..+|.+++.+..++.|+.+++.+..+ +.++.+.+|+.|+.
T Consensus 44 qv~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCchh-hccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 356788899999876 34444 4899999999999999999999999999999999999998865 99999999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
+++.+.++|++|+.+..|..|+..+|. +..+|.+ ++++.+|-.|.+.++.+. +.+.+.-+++.|++
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRLKH 187 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHHHh
Confidence 999999999999999999999999998 9999988 899999999999888765 34555555999999
Q ss_pred EEeeccCCccCCCcc-ccccccEEEEEecCcc--ccccccCCceEEEecccc-cChHH-HHHhhccccEEEccccCCccc
Q 002163 266 LEIQICDAMILPKGL-FSKKLERYKIFIGDEW--DWSGNYKNKRVLKLKLYT-SNVDE-VIMQLKGIEELYLDEVPGIKN 340 (958)
Q Consensus 266 L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~--~~~~~~~~l~~l~l~~~~-~~l~~-~~~~l~~L~~L~L~~~~~~~~ 340 (958)
|+...|..+.+|+++ .+++|+.+++..+.+. ..++..+.++.+.+..+. .-+|. ....++++..|++++ +.++.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke 266 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKE 266 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-ccccc
Confidence 999999999999998 7888888877766652 233334444443333221 12333 444678888889888 55665
Q ss_pred cccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCc---hhccCccEEEEecC
Q 002163 341 VLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRA---ESFYKLKIIKVRNC 417 (958)
Q Consensus 341 ~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c 417 (958)
.+..+ ..+.+|.+|+++++. +..++ +..+.+ .|+.|.+.+-+ ++.+-...+.. ..+..|+.= + .|
T Consensus 267 ~Pde~--clLrsL~rLDlSNN~-is~Lp-----~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~-~-~~ 334 (565)
T KOG0472|consen 267 VPDEI--CLLRSLERLDLSNND-ISSLP-----YSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK-I-KD 334 (565)
T ss_pred CchHH--HHhhhhhhhcccCCc-cccCC-----cccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh-h-cc
Confidence 55554 677889999998875 22221 445555 67777777633 22211000111 112222220 0 01
Q ss_pred CCccc----------cc--chhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccc
Q 002163 418 DKLKN----------IF--SFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (958)
Q Consensus 418 ~~l~~----------l~--~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 485 (958)
..+.. .+ +.+.....-+.+.|.+++ .++..+|...-+... -.-.....++.. .+..+
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~---------~~~Vt~VnfskN-qL~el 403 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAK---------SEIVTSVNFSKN-QLCEL 403 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhh---------hcceEEEecccc-hHhhh
Confidence 11110 00 011233345566666665 344444422111000 000122222221 12222
Q ss_pred cccccchhhccccc-ceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEE
Q 002163 486 YSQVKTSAASQTRL-KELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (958)
Q Consensus 486 ~~~~~~~~~~~~~L-~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (958)
|.+ ...+..+ ..+.++++ ++..+ ......+++|..|++++|.+.+++..... +..|+.|+|
T Consensus 404 Pk~----L~~lkelvT~l~lsnn-~isfv----------~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~---lv~Lq~Lnl 465 (565)
T KOG0472|consen 404 PKR----LVELKELVTDLVLSNN-KISFV----------PLELSQLQKLTFLDLSNNLLNDLPEEMGS---LVRLQTLNL 465 (565)
T ss_pred hhh----hHHHHHHHHHHHhhcC-ccccc----------hHHHHhhhcceeeecccchhhhcchhhhh---hhhhheecc
Confidence 221 1111111 12222222 11110 01234688899999999988877655443 567999999
Q ss_pred ecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCcccCCCccc
Q 002163 565 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 644 (958)
Q Consensus 565 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 644 (958)
+. +++..+ |. ....+..||.+-.++.. +..++..... .+.+|..|++.+. .+..+|+... ++++|+
T Consensus 466 S~-NrFr~l-P~-~~y~lq~lEtllas~nq-i~~vd~~~l~-------nm~nL~tLDL~nN-dlq~IPp~Lg--nmtnL~ 531 (565)
T KOG0472|consen 466 SF-NRFRML-PE-CLYELQTLETLLASNNQ-IGSVDPSGLK-------NMRNLTTLDLQNN-DLQQIPPILG--NMTNLR 531 (565)
T ss_pred cc-cccccc-hH-HHhhHHHHHHHHhcccc-ccccChHHhh-------hhhhcceeccCCC-chhhCChhhc--ccccee
Confidence 87 577776 43 34555555555555544 7766554211 5677888888763 5777776654 589999
Q ss_pred EEEEecCC
Q 002163 645 KLEVYGCD 652 (958)
Q Consensus 645 ~L~i~~C~ 652 (958)
+|++.|.|
T Consensus 532 hLeL~gNp 539 (565)
T KOG0472|consen 532 HLELDGNP 539 (565)
T ss_pred EEEecCCc
Confidence 99999865
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=6.1e-23 Score=226.97 Aligned_cols=464 Identities=23% Similarity=0.232 Sum_probs=273.0
Q ss_pred cCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccC
Q 002163 88 CPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~ 165 (958)
+.++++..|..-..|-.. +.-+|++|++++|.+. ..|.. +..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 556666666554433111 3334899999988876 55654 3778889999999999999999999999999999999
Q ss_pred CCCCC-ccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 166 CALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 166 ~~l~~-l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
|.+.. +.++..+++|++||+++|.+..+|.-+..++.+..++.++|..+..++. .. .+++++..+.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----
Confidence 98775 4789999999999999999999998899999888888888854554443 11 566666555443
Q ss_pred cccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhh
Q 002163 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (958)
...+.++..+++ .|++..|.+. ........+|+.+....+.. ..+.+. -
T Consensus 170 ------~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~l----------s~l~~~------------g 218 (1081)
T KOG0618|consen 170 ------GSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQL----------SELEIS------------G 218 (1081)
T ss_pred ------cchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhccc----------ceEEec------------C
Confidence 334556666665 6777777654 11111334444433322221 111111 1
Q ss_pred ccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCch
Q 002163 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (958)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (958)
++++.|+...+...+. ... ..-.+|++++++.+.. ..+ ++| ....++|+.+.+.+ +.+..+. ....
T Consensus 219 ~~l~~L~a~~n~l~~~-~~~---p~p~nl~~~dis~n~l-~~l---p~w--i~~~~nle~l~~n~-N~l~~lp---~ri~ 284 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTL-DVH---PVPLNLQYLDISHNNL-SNL---PEW--IGACANLEALNANH-NRLVALP---LRIS 284 (1081)
T ss_pred cchheeeeccCcceee-ccc---cccccceeeecchhhh-hcc---hHH--HHhcccceEecccc-hhHHhhH---HHHh
Confidence 2344444433222210 000 1123455555554431 111 111 23344555555544 3333221 1122
Q ss_pred hccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCccccc
Q 002163 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (958)
Q Consensus 405 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 484 (958)
...+|+.|.+.. ..++++|+. .+++.+|++|++.. .++...+..+-. ....+|..|..+.. .+..
T Consensus 285 ~~~~L~~l~~~~-nel~yip~~--le~~~sL~tLdL~~-N~L~~lp~~~l~----------v~~~~l~~ln~s~n-~l~~ 349 (1081)
T KOG0618|consen 285 RITSLVSLSAAY-NELEYIPPF--LEGLKSLRTLDLQS-NNLPSLPDNFLA----------VLNASLNTLNVSSN-KLST 349 (1081)
T ss_pred hhhhHHHHHhhh-hhhhhCCCc--ccccceeeeeeehh-ccccccchHHHh----------hhhHHHHHHhhhhc-cccc
Confidence 344555555555 345555542 44566666666655 333333311000 00011222222111 1111
Q ss_pred ccccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEE
Q 002163 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (958)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (958)
.+. ..-...+.|+.|.+.++. .+. . .+..+..+..|+.|++++|.+..+....+. .++.|++|++
T Consensus 350 lp~---~~e~~~~~Lq~LylanN~----Ltd---~---c~p~l~~~~hLKVLhLsyNrL~~fpas~~~--kle~LeeL~L 414 (1081)
T KOG0618|consen 350 LPS---YEENNHAALQELYLANNH----LTD---S---CFPVLVNFKHLKVLHLSYNRLNSFPASKLR--KLEELEELNL 414 (1081)
T ss_pred ccc---ccchhhHHHHHHHHhcCc----ccc---c---chhhhccccceeeeeecccccccCCHHHHh--chHHhHHHhc
Confidence 110 012345667777776652 111 1 233456789999999999998887766554 3889999999
Q ss_pred ecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCcccCCCccc
Q 002163 565 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 644 (958)
Q Consensus 565 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 644 (958)
++ ++|+.+ |.. ...++.|++|...++. |..+|... .+|.|+.++++ |.+|+........ ..|.|+
T Consensus 415 SG-NkL~~L-p~t-va~~~~L~tL~ahsN~-l~~fPe~~---------~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~Lk 479 (1081)
T KOG0618|consen 415 SG-NKLTTL-PDT-VANLGRLHTLRAHSNQ-LLSFPELA---------QLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLK 479 (1081)
T ss_pred cc-chhhhh-hHH-HHhhhhhHHHhhcCCc-eeechhhh---------hcCcceEEecc-cchhhhhhhhhhC-CCcccc
Confidence 99 899999 543 6788999999888776 76666321 67889999987 5667655433322 137999
Q ss_pred EEEEecCCcc
Q 002163 645 KLEVYGCDKV 654 (958)
Q Consensus 645 ~L~i~~C~~L 654 (958)
+|+++|...+
T Consensus 480 yLdlSGN~~l 489 (1081)
T KOG0618|consen 480 YLDLSGNTRL 489 (1081)
T ss_pred eeeccCCccc
Confidence 9999998764
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.5e-22 Score=213.19 Aligned_cols=317 Identities=21% Similarity=0.266 Sum_probs=215.5
Q ss_pred cCCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCC-CCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEE
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L 161 (958)
...++.||++.+|++..+.... .++.||++++..|+.. ..+|+++| +++.|.+||||+|.++..|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3568899999999887776554 7899999999888763 46888876 6999999999999999999999999999999
Q ss_pred EccCCCCCCc--cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+|++|.|..+ +-+-+|+.|-+|||++|++..+|+.+.+|.+|++|++++|. +..+.-.-+..+++|++|.+++++-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999865 56779999999999999999999999999999999999997 55443323566788999999887543
Q ss_pred ccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc-ccccccEEEEEecCccccccccCCceEEEecccccChH
Q 002163 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (958)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (958)
....+..+..+.+|+.++++.|++..+|.-+ .+.+|+.|+++.+.+-. +.
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-------------------L~ 261 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-------------------LN 261 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-------------------ee
Confidence 2446778888999999999999888787776 77888888887665411 11
Q ss_pred HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcc-cccccccccchhhcccccccccee
Q 002163 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLIHLEKIC 397 (958)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~ 397 (958)
...+.-.+|+.|+++.. ..+..+..+ ..++.|+.|.+.++. +.. ... .+++.+.+|+.+...+ ++++-++
T Consensus 262 ~~~~~W~~lEtLNlSrN-QLt~LP~av--cKL~kL~kLy~n~Nk-L~F----eGiPSGIGKL~~Levf~aan-N~LElVP 332 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRN-QLTVLPDAV--CKLTKLTKLYANNNK-LTF----EGIPSGIGKLIQLEVFHAAN-NKLELVP 332 (1255)
T ss_pred ccHHHHhhhhhhccccc-hhccchHHH--hhhHHHHHHHhccCc-ccc----cCCccchhhhhhhHHHHhhc-cccccCc
Confidence 11122234555555542 222222222 455555555554442 110 011 2344455555555554 3444331
Q ss_pred ccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccc
Q 002163 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (958)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (958)
. ....++.|++|.+.. +++-.+|. .+.-++.|+.|++.+.+++
T Consensus 333 E---glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 333 E---GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred h---hhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCc
Confidence 1 122445555555543 44444442 2445566666666655554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=4.6e-22 Score=209.50 Aligned_cols=363 Identities=19% Similarity=0.212 Sum_probs=236.2
Q ss_pred CCCcCEEEeecCCCe--ecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEE
Q 002163 85 LKNCPTIFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L 161 (958)
++-+|-+++++|++. .+|.+. .++.++-|-+...... .+|+. ++.+.+|..|.+.+|++.++-..++.|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 445777888888774 566666 6778888888776655 67766 478888888888888888777778888888888
Q ss_pred EccCCCCC---CccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcc
Q 002163 162 CLDRCALG---DIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 162 ~L~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (958)
+++.|.++ .|+.|.+|..|.+|||++|.+++.|.++.+-+++-+|++++|. +..||...+.+|+.|-.|++++|..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh
Confidence 88888876 3478888888888888888888888888888888888888887 8888888788888888888888765
Q ss_pred cccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC-cc-ccccccEEEEEecCccccccccCCceEEEecccccC
Q 002163 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK-GL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSN 316 (958)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~ 316 (958)
. ..+..+..|.+|++|.+++|.+..+.- .+ .+..|+.|.++...- + -.+
T Consensus 163 e------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-----------T------l~N 213 (1255)
T KOG0444|consen 163 E------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-----------T------LDN 213 (1255)
T ss_pred h------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-----------h------hhc
Confidence 4 467788888888888888776432110 00 233344433322110 0 033
Q ss_pred hHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccce
Q 002163 317 VDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKI 396 (958)
Q Consensus 317 l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 396 (958)
+|..+..+.+|..++++. ++...++..+ -.+++|+.|+++++. ++.+. ...+...+|+.|.++. +.++.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecl--y~l~~LrrLNLS~N~-iteL~-----~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSE-NNLPIVPECL--YKLRNLRRLNLSGNK-ITELN-----MTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred CCCchhhhhhhhhccccc-cCCCcchHHH--hhhhhhheeccCcCc-eeeee-----ccHHHHhhhhhhcccc-chhccc
Confidence 444455566777777765 2333222222 456777777777764 33221 2334456677777766 444443
Q ss_pred eccCCCchhccCccEEEEecCCCcc--cccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceE
Q 002163 397 CLGQLRAESFYKLKIIKVRNCDKLK--NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSL 474 (958)
Q Consensus 397 ~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L 474 (958)
+ .....+++|++|.+.+ ++++ .+|+ .++.+.+|+.+...+ +.++-++ +++..+++|++|
T Consensus 284 P---~avcKL~kL~kLy~n~-NkL~FeGiPS--GIGKL~~Levf~aan-N~LElVP------------EglcRC~kL~kL 344 (1255)
T KOG0444|consen 284 P---DAVCKLTKLTKLYANN-NKLTFEGIPS--GIGKLIQLEVFHAAN-NKLELVP------------EGLCRCVKLQKL 344 (1255)
T ss_pred h---HHHhhhHHHHHHHhcc-CcccccCCcc--chhhhhhhHHHHhhc-cccccCc------------hhhhhhHHHHHh
Confidence 1 1233566676666655 3333 3332 355666666666555 3444444 245667777777
Q ss_pred ecCCCcccccccccccchhhcccccceecccCCCceeec
Q 002163 475 TLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVIL 513 (958)
Q Consensus 475 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 513 (958)
.+. |..+..+|.+ +..++.|+.|+++.+|+++.|
T Consensus 345 ~L~-~NrLiTLPea----IHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 345 KLD-HNRLITLPEA----IHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccc-ccceeechhh----hhhcCCcceeeccCCcCccCC
Confidence 775 3455555542 566777788888888777554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=154.91 Aligned_cols=167 Identities=26% Similarity=0.363 Sum_probs=146.6
Q ss_pred CeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC-ccccCC
Q 002163 98 HWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGN 176 (958)
Q Consensus 98 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l~~i~~ 176 (958)
+.+++..+.+.+++.|.+++|.+. .+|+.+ ..+++|++|++++|+|+.+|.+++.++.||.|++.-|++.. +..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 445666678888888999999887 567664 88999999999999999999999999999999999999775 589999
Q ss_pred CCCccEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCCh
Q 002163 177 LKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 254 (958)
Q Consensus 177 L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 254 (958)
++-|++||+.+|++. .+|..|..|+.||.|++++|. ..-+|++ ++++++||.|.+..|... ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 999999999999776 789999999999999999998 8889988 899999999999887654 468
Q ss_pred hhhcCCCCCCEEEeeccCCccCCCcc
Q 002163 255 QELKLLSHLTTLEIQICDAMILPKGL 280 (958)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (958)
.+++.++.|++|++.++....+|+++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 89999999999999999998888876
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.2e-17 Score=145.52 Aligned_cols=162 Identities=25% Similarity=0.337 Sum_probs=146.1
Q ss_pred cCCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEE
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~ 162 (958)
....++++.+++|.+..+|+.+ .+.+|++|++++|.+. ++|.++ +++++||.|+++-|.+..+|..|+.++.|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3567899999999999999888 8999999999999887 788775 999999999999999999999999999999999
Q ss_pred ccCCCCCC---ccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 163 LDRCALGD---IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 163 L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+.+|.+.. +..|..+..|+.|.++.|+++-+|.++++|++|+.|.+.+|. +-++|++ ++.++.|++|++.+|...
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 99999873 477888999999999999999999999999999999999998 8899999 899999999999998865
Q ss_pred ccccccccCCCcCChhhhcCCC
Q 002163 240 WEFEGLNVGRSNASLQELKLLS 261 (958)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~ 261 (958)
..+.+++++.
T Consensus 187 ------------vlppel~~l~ 196 (264)
T KOG0617|consen 187 ------------VLPPELANLD 196 (264)
T ss_pred ------------ecChhhhhhh
Confidence 3466666654
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=1.7e-15 Score=152.79 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=118.4
Q ss_pred CCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccC-CCCCCc--c
Q 002163 97 KHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR-CALGDI--A 172 (958)
Q Consensus 97 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~-~~l~~l--~ 172 (958)
...++|..++ +....+.|..|.+. .+|+.+|+.+++||.|||++|.|+.+ |++|..+..|-.|-+-+ |+|+++ .
T Consensus 57 GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4566777664 45667888888888 89999999999999999999999977 78999999887777666 889987 7
Q ss_pred ccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCc
Q 002163 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (958)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (958)
.|++|..|+.|.+.-|.+..++ +.+..|++|+.|.+.+|. +..++++.+..+.+++++.+..+.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 8999999999999999998775 578999999999999998 899998778999999999877654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.7e-12 Score=150.29 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=94.8
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (958)
-..|++..+.+..+|..+. ++|+.|++.+|.+. .+|. ..++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4466777777766666543 46777777776665 4553 246677777777777777643 3567777777777
Q ss_pred CCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccccc
Q 002163 168 LGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (958)
Q Consensus 168 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (958)
+..++. -..+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. . .+|+.|++.+|.+..
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~------- 336 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS------- 336 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc-------
Confidence 665432 125566777777777777642 3567777777775 6666642 1 345566666665430
Q ss_pred CCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 248 GRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
.+ .+ ..+|+.|++++|.+..+|.
T Consensus 337 -----LP-~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 -----LP-TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -----cc-cc--ccccceEecCCCccCCCCC
Confidence 11 11 1357777777776665554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=3.2e-12 Score=148.00 Aligned_cols=247 Identities=18% Similarity=0.119 Sum_probs=168.8
Q ss_pred EecCcccCCCccccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc
Q 002163 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (958)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 150 (958)
+........+. .++.+++.|++.+|.++.+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..+|.
T Consensus 208 Ls~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 208 VGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA 279 (788)
T ss_pred cCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhh
Confidence 45555555443 4567899999999999988864 489999999999887 5664 24689999999999998886
Q ss_pred ccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCE
Q 002163 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 230 (958)
.+ .+|+.|++++|.++.++. .+++|++|++++|.++.+|... .+|+.|++++|. +..+|. + ..+|++
T Consensus 280 lp---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~ 346 (788)
T PRK15387 280 LP---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQE 346 (788)
T ss_pred ch---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--ccccce
Confidence 43 578899999999887643 3578999999999999888533 357778888887 887875 2 257899
Q ss_pred EEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEe
Q 002163 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKL 310 (958)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l 310 (958)
|++++|.+.. .+. + ..+|+.|++++|.+..+|... .+|+.+++..+.+-
T Consensus 347 LdLS~N~Ls~------------LP~-l--p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt-------------- 395 (788)
T PRK15387 347 LSVSDNQLAS------------LPT-L--PSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLT-------------- 395 (788)
T ss_pred EecCCCccCC------------CCC-C--CcccceehhhccccccCcccc--cccceEEecCCccc--------------
Confidence 9999887651 111 1 246777888888877777543 56777776554431
Q ss_pred cccccChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccc
Q 002163 311 KLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHN 389 (958)
Q Consensus 311 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 389 (958)
.+|. ..++|+.|+++++ .+.. +|.+ ..+|+.|+++++. ++.++ ..+..+++|+.|++++
T Consensus 396 -----~LP~---l~s~L~~LdLS~N-~Lss-IP~l----~~~L~~L~Ls~Nq-Lt~LP-----~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 396 -----SLPV---LPSELKELMVSGN-RLTS-LPML----PSGLLSLSVYRNQ-LTRLP-----ESLIHLSSETTVNLEG 454 (788)
T ss_pred -----CCCC---cccCCCEEEccCC-cCCC-CCcc----hhhhhhhhhccCc-ccccC-----hHHhhccCCCeEECCC
Confidence 1111 1346777777773 3333 2221 3456777777664 33332 2344566777777776
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.3e-12 Score=150.30 Aligned_cols=135 Identities=19% Similarity=0.332 Sum_probs=60.3
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (958)
...+.+.++++..+|..+. +.++.|++++|.+. .+|..++ ++|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP-EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 3445554444444444332 34555555555444 3443332 245555555555555544332 245555555555
Q ss_pred CCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCc
Q 002163 168 LGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (958)
Q Consensus 168 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (958)
+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++|. ++.+|.. +. .+|+.|++++|.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNS 315 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCc
Confidence 4433 2221 245555555555554444332 245555555544 4444432 11 234444444443
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=5.8e-13 Score=157.76 Aligned_cols=129 Identities=26% Similarity=0.366 Sum_probs=105.3
Q ss_pred cCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCC--CCCc--cccCCCCCccEEEccCC-CCCCCchhhcCCCCCC
Q 002163 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA--LGDI--AIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLR 204 (958)
Q Consensus 130 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~ 204 (958)
.+....|...+.++.+..++.+..+- .|++|-+.++. +..+ ..|..++.|++||+++| .+.+||..|++|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 45567788888888888877665443 79999998886 5554 44888999999999988 7899999999999999
Q ss_pred EEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccC
Q 002163 205 LFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 205 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
+|+++++. +..+|.+ +++|..|.+|++..+... ...+.....|++||+|.+....
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 99999998 9999999 899999999998876433 2235566669999999987654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.6e-12 Score=149.87 Aligned_cols=193 Identities=20% Similarity=0.303 Sum_probs=146.9
Q ss_pred EecCcccCCCccccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc
Q 002163 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (958)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 150 (958)
+.+......+ ..+++.++.|++.+|.+..+|.... ++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|.
T Consensus 185 L~~~~LtsLP-~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 185 LKILGLTTIP-ACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPE 258 (754)
T ss_pred eCCCCcCcCC-cccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCCh
Confidence 3343444433 2456789999999999999887653 69999999999877 6776543 479999999999999998
Q ss_pred ccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCC
Q 002163 151 LFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (958)
.+. .+|++|++++|.++.+ ..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++|+
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~ 328 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLK 328 (754)
T ss_pred hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccce
Confidence 765 5899999999998865 4443 589999999999999987654 479999999998 8888865 3 36899
Q ss_pred EEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecC
Q 002163 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (958)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (958)
.|++++|.+. ..+..+. ++|+.|++++|.+..+|..+ ..+|+.|++..+.
T Consensus 329 ~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~ 378 (754)
T PRK15370 329 TLEAGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNA 378 (754)
T ss_pred eccccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCc
Confidence 9999988765 1223332 68999999999887777544 2456666555443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=1.3e-14 Score=147.74 Aligned_cols=301 Identities=15% Similarity=0.120 Sum_probs=156.0
Q ss_pred CCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCc
Q 002163 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 636 (958)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 636 (958)
..|+.|.+++|....+-+...+.++++++++|.+.+|.++++..-..-+ -.++.|+.|.+..|+.+++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla------~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA------RYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH------HhcchhhhhhhcccchhHHHHHHHH
Confidence 3477777888776665544455677888888888888877654221100 1567888888888888777654444
Q ss_pred ccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeEEeeccchhhhhhhccCCccccccc
Q 002163 637 TSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNL 716 (958)
Q Consensus 637 ~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 716 (958)
...|++|++|.++.|+.++.-.. .........++.+...+|...+...-......+..+
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv---------------------~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGV---------------------QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcc---------------------hHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 45688888888888887763100 000022333445544454443322111122233344
Q ss_pred cEEEeeeCCCC-ccc-HHHHhhcCCCcEEEEE-cceeeeeccchhhhhhhhhccccceEEecCccCccccccCCCCCccc
Q 002163 717 KNLEVVNDESE-NFR-IGFLERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSI 793 (958)
Q Consensus 717 ~~L~i~~c~~~-~~~-~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 793 (958)
.++++..|..+ ... ...-..+..|+.|+.+ |..+.+..-. .--+..++|+.|.+.+|..+...
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~----aLg~~~~~L~~l~l~~c~~fsd~---------- 336 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW----ALGQHCHNLQVLELSGCQQFSDR---------- 336 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH----HHhcCCCceEEEeccccchhhhh----------
Confidence 55555555444 111 1122345555555555 5543332111 01122344444444444443332
Q ss_pred cCCccEEEEeccCCcccccCCccccCcccEEEEccCcCCccccchHhhhcCCCccEEEEcccchhHHHhccCcccccccc
Q 002163 794 TENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEI 873 (958)
Q Consensus 794 l~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~ 873 (958)
.+.....+++.|+.+++.+|-.+.+-.......+++.|++|.++.|..+++--.... +....
T Consensus 337 ----------------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l--~~~~c 398 (483)
T KOG4341|consen 337 ----------------GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL--SSSSC 398 (483)
T ss_pred ----------------hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh--hhccc
Confidence 112223455566666666665555443344555666666666666655544200000 00111
Q ss_pred cccccceeccccCcccccccCCCccccCCCccEEEeccCCCCcc
Q 002163 874 VFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKI 917 (958)
Q Consensus 874 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~ 917 (958)
.+..|+.+.+.+||.++.-...- ...|++||.+++.+|..+.+
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhh
Confidence 34556667777777655544332 24567777777777776655
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=5.1e-13 Score=135.12 Aligned_cols=139 Identities=24% Similarity=0.324 Sum_probs=120.6
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeC-ccCccC
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQFLSL 148 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~l 148 (958)
++.+..++| .+.+.....+.+..|.|..+|+.. .+++||.|+|++|.+. .|.++.|.+++.|-.|-+.+ |+|+.+
T Consensus 54 r~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 54 RGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 344444444 467888999999999999999865 8999999999999998 77778899999988877766 899999
Q ss_pred Cc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCC
Q 002163 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 212 (958)
|+ .|++|..|+-|.+.-|++..+ ..+..|++|..|.+..|.+..++. .+..+..++++.+..+.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 96 799999999999999998865 789999999999999999999987 78999999999887765
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=1.8e-13 Score=139.65 Aligned_cols=142 Identities=19% Similarity=0.147 Sum_probs=81.3
Q ss_pred ccccccEEEeeeCCCC-cccHHH-HhhcCCCcEEEEE-cceeeeeccchhhhhhhhhccccceEEecCccCccccccCCC
Q 002163 712 IFRNLKNLEVVNDESE-NFRIGF-LERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDS 788 (958)
Q Consensus 712 ~~~~L~~L~i~~c~~~-~~~~~~-l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 788 (958)
.+..|+.|..++|.++ ..+.+. -+++++|+.|.+. |..+.+.=-.. --.+.+.|+.+.+.+|.....-.- .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----l~rn~~~Le~l~~e~~~~~~d~tL--~ 365 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----LGRNCPHLERLDLEECGLITDGTL--A 365 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh----hhcCChhhhhhcccccceehhhhH--h
Confidence 3556777777777776 333333 3467788888887 77655430000 012356677777776654333110 0
Q ss_pred CCccccCCccEEEEeccCCcccc-----cCCccccCcccEEEEccCcCCccccchHhhhcCCCccEEEEcccchhHH
Q 002163 789 KLDSITENLESLEVWWCENLINL-----VPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTE 860 (958)
Q Consensus 789 ~~~~~l~~L~~L~i~~c~~l~~l-----~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~ 860 (958)
....+++.|+.|.++.|..++.- .........|..+++++||.+++-... ....+++|+.+++.+|.....
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhh
Confidence 11346677777777777766433 223344566777777777777654332 345566777777777766543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.1e-10 Score=110.34 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=51.5
Q ss_pred cCCCCCcEEEeeCccCccCCcccC-CCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhh-cCCCCCCEEe
Q 002163 130 AGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (958)
Q Consensus 130 ~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 207 (958)
.+..++|.|+|.++.|+.+. .++ .+.+|+.|++++|.|+.++.+..+++|++|++++|.|++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34556788888888877764 455 57788888888888888878888888888888888888886555 3578888888
Q ss_pred ccCCCCCCccCh-hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeec
Q 002163 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (958)
Q Consensus 208 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (958)
+++|. +.++.. ..++.+++|++|++.+|.+. ........-+..+++|+.|+-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCEE
Confidence 88876 554432 22667888888888887765 23344566677788888877543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.7e-10 Score=107.87 Aligned_cols=122 Identities=26% Similarity=0.419 Sum_probs=45.3
Q ss_pred eeCccCccCCcccCCCCCCCEEEccCCCCCCccccC-CCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccC
Q 002163 140 LSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIG-NLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIP 218 (958)
Q Consensus 140 L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 218 (958)
++.+.|+..|. +.+..++|.|+|+++.|+.++.++ .+.+|++|++++|.|+.++ ++..+++|++|++++|. +++++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 34445555554 456668999999999999998888 6899999999999999987 78899999999999998 99997
Q ss_pred hhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCc
Q 002163 219 PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (958)
Q Consensus 219 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (958)
.+....+++|++|++++|.+.. -..+..++.+++|+.|++.+|.+.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~----------l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISD----------LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---S----------CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cchHHhCCcCCEEECcCCcCCC----------hHHhHHHHcCCCcceeeccCCccc
Confidence 6633469999999999998861 123678888999999999988753
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.4e-11 Score=130.71 Aligned_cols=177 Identities=23% Similarity=0.284 Sum_probs=151.9
Q ss_pred CCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEcc
Q 002163 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~ 164 (958)
......+++.|++.++|... .|-.|..+.+..|.+. .+|.. ..++..|.+|||+.|++..+|..++.|+ |++|.++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 34556777888888888766 6778888888888776 56655 4889999999999999999999988876 8999999
Q ss_pred CCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 165 RCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 165 ~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
+|+++.+ ..++.+.+|..||.+.|.+..+|..++.+.+||.|++..|. +..+|.+ ++.| .|..|+++.|.+.
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis---- 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS---- 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee----
Confidence 9998865 88999999999999999999999999999999999999998 8899988 6644 5889999988876
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (958)
..+.++.+|++|++|.+.+|.+.+-|..+
T Consensus 225 --------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 --------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred --------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 46889999999999999999988888777
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=3e-10 Score=123.67 Aligned_cols=177 Identities=21% Similarity=0.225 Sum_probs=93.5
Q ss_pred CcCEEEeecCCCe-----ecCCCC-CCCCccEEEcCCCcCCC--C---cChhhhcCCCCCcEEEeeCccCc-cCCcccCC
Q 002163 87 NCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSI--K---IPNHVFAGMSNLRGLALSNMQFL-SLPSLFHL 154 (958)
Q Consensus 87 ~~r~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~--~---~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~ 154 (958)
.++.+.+.++.+. .++... ..+.++.|+++++.... . .....|..+++|+.|+++++.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4666666666552 222222 44556677766655431 0 01123556667777777776664 22333333
Q ss_pred C---CCCCEEEccCCCCCC-----c-cccCCC-CCccEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCCCc---
Q 002163 155 P---LNLQTLCLDRCALGD-----I-AIIGNL-KKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKV--- 216 (958)
Q Consensus 155 l---~~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~--- 216 (958)
+ ++|++|++++|.+.. + ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. +..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence 3 337777777776551 1 344555 66777777777665 234455666667777776665 431
Q ss_pred --cChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccC
Q 002163 217 --IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 217 --~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
++.. +..+++|++|++++|.+... ........+..+++|+.|++++|.
T Consensus 183 ~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 183 RALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCc
Confidence 2222 34445677777666654310 001123344555666666666654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=2.6e-11 Score=128.63 Aligned_cols=187 Identities=22% Similarity=0.313 Sum_probs=156.4
Q ss_pred EEEeecCCCeecCCC---CCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCC
Q 002163 90 TIFLHDCKHWEVPEG---LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 90 ~l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (958)
++.+++-...++|.. ..+......+++.|++. .+|.. +..+..|..+.+..|.+..+|..++++..|.||||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 344444444555532 35666677888888887 78866 47788899999999999999999999999999999999
Q ss_pred CCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccc
Q 002163 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
+++.+ ..++.| -|++|.+++|+++.+|.+|+.+.+|.+||.+.|. +..+|.. ++.+.+|+.|.+..|...
T Consensus 132 qlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 99876 555555 4999999999999999999999999999999998 9999998 899999999999888764
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc-ccccccEEEEEecC
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~ 294 (958)
..+.++..|+ |..|+++.|++..+|-.+ .+..|+.+.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4688888776 899999999999999988 88888888776554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.1e-10 Score=113.83 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=141.1
Q ss_pred cCCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCC---CcChh-------------------hhcCCCCCcEEEe
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSI---KIPNH-------------------VFAGMSNLRGLAL 140 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~---~~~~~-------------------~~~~l~~Lr~L~L 140 (958)
+++++..+-++.++.+.+.... .-|.|.++.+....... -+|.. .....+.|..|||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 4567777777776655444332 34677777765433210 01110 1123567999999
Q ss_pred eCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChh
Q 002163 141 SNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (958)
Q Consensus 141 ~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 220 (958)
|+|.|+.+-+++.-++.+|.|++++|+|..+.++..|++|+.||+++|.+.++-..-.+|-|.++|.+.+|. +.++..
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG- 369 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG- 369 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-
Confidence 999999999999999999999999999999988999999999999999998887777889999999999998 888764
Q ss_pred hcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 221 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
+++|.+|..|++.+|.+..- .....+|+++.|+.+.+.+|.+..++.
T Consensus 370 -L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 -LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCccccch
Confidence 89999999999999987621 235678999999999999888765554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=6.9e-10 Score=120.78 Aligned_cols=173 Identities=23% Similarity=0.238 Sum_probs=120.8
Q ss_pred CcCEEEeecCCCeecC-------CCC-CCCCccEEEcCCCcCCCCcChhhhcCCC---CCcEEEeeCccCc-----cCCc
Q 002163 87 NCPTIFLHDCKHWEVP-------EGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMS---NLRGLALSNMQFL-----SLPS 150 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~-------~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~---~Lr~L~L~~~~i~-----~lp~ 150 (958)
.++++++..+.+...+ ..+ .+++|+.|++++|.+....+ ..|..+. +|++|++++|.+. .+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 4667777666544211 112 57899999999888763333 3334444 4999999999876 3345
Q ss_pred ccCCC-CCCCEEEccCCCCCC-----c-cccCCCCCccEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCCCcc-
Q 002163 151 LFHLP-LNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVI- 217 (958)
Q Consensus 151 ~i~~l-~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~- 217 (958)
.+..+ ++|+.|++++|.++. + ..+..+.+|++|++++|.+. .++..+..+++|++|++++|. +...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHH
Confidence 66777 899999999999872 2 45677889999999999887 345567777899999999987 5432
Q ss_pred ----ChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhc-----CCCCCCEEEeeccCC
Q 002163 218 ----PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-----LLSHLTTLEIQICDA 273 (958)
Q Consensus 218 ----p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~ 273 (958)
+.. +..+++|++|++++|.+. +..+..+. ..+.|++|++.+|.+
T Consensus 210 ~~~l~~~-~~~~~~L~~L~ls~n~l~-----------~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 210 ASALAET-LASLKSLEVLNLGDNNLT-----------DAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHH-hcccCCCCEEecCCCcCc-----------hHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 222 567889999999998765 11122221 246788888887764
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=2.9e-10 Score=110.90 Aligned_cols=127 Identities=23% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccc-cCCCCCccEEEcc
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAI-IGNLKKLEILSLV 186 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~-i~~L~~L~~L~l~ 186 (958)
+.|+++++++|.+. .+..+ .+-.+.+|+|++|.|.+..+-. +..+++|+.|||++|.++.+.. -.+|-|.++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44555555555554 33333 2445555666666665554432 5555556666666655554422 2345555555666
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEEeeCCccc
Q 002163 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 187 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 239 (958)
+|.|+.+. ++++|++|.+||+++|. +..+.. ..||+|+.|+++.+.+|.+.
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555553 55556666666665554 433321 11555666666655555543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.5e-08 Score=113.54 Aligned_cols=188 Identities=26% Similarity=0.306 Sum_probs=138.0
Q ss_pred EEeecCCC-eecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCC-CCcEEEeeCccCccCCcccCCCCCCCEEEccCCCC
Q 002163 91 IFLHDCKH-WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMS-NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (958)
Q Consensus 91 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l 168 (958)
+....+.+ .........+.++.|.+.++.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 45555544 22223335677888888888877 566542 4453 88999999999888887888899999999999988
Q ss_pred CCcc-ccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccccc
Q 002163 169 GDIA-IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (958)
Q Consensus 169 ~~l~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (958)
.+++ ..+.+.+|+.|+++++.+..+|..++.+.+|++|.++++. ....+.. +.++.++..|.+.++.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 8774 4448888999999999898888887788888899888886 4444444 788888888877666543
Q ss_pred CCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecC
Q 002163 248 GRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (958)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (958)
..+..++.+.+++.|+++.+.+..++......+++.+.+..+.
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccCcc
Confidence 1256777788888888888888777774466777777766544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=2e-08 Score=112.56 Aligned_cols=184 Identities=27% Similarity=0.367 Sum_probs=114.0
Q ss_pred EEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCC-CCCEEEccCCCCCCc-cccCCCCCccEEEccCCC
Q 002163 112 FFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSN 189 (958)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~ 189 (958)
.+.+..+........ ....+.+..|++.++.+..+|...+.+. +|++|+++++.+..+ ..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 455555554222221 2445667777777777777777666664 777777777777766 577777777777777777
Q ss_pred CCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEee
Q 002163 190 IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (958)
Q Consensus 190 l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (958)
+..+|...+.+.+|+.|+++++. +..+|.. ++.+.+|++|.+++|... ..+..+.++.++..+.+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccC
Confidence 77777666677777777777776 7777764 355566777777766321 245566666666666666
Q ss_pred ccCCccCCCcc-ccccccEEEEEecCcccc--ccccCCceEEEec
Q 002163 270 ICDAMILPKGL-FSKKLERYKIFIGDEWDW--SGNYKNKRVLKLK 311 (958)
Q Consensus 270 ~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~--~~~~~~l~~l~l~ 311 (958)
.+....++..+ .+..++.+.+..+.+-.+ ......++.+.+.
T Consensus 241 ~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred CceeeeccchhccccccceeccccccccccccccccCccCEEecc
Confidence 66655544444 445566666665544322 2333444444443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.3e-08 Score=103.51 Aligned_cols=189 Identities=21% Similarity=0.167 Sum_probs=128.5
Q ss_pred cCCCcCEEEeecCCCeecCC--CC-CCCCccEEEcCCCcCCC-CcChhhhcCCCCCcEEEeeCccCccCCc--ccCCCCC
Q 002163 84 MLKNCPTIFLHDCKHWEVPE--GL-EYPQLEFFCMSPRDHSI-KIPNHVFAGMSNLRGLALSNMQFLSLPS--LFHLPLN 157 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~l~~ 157 (958)
..+++|.+++.++.+...+. .. .|+++|.|+|++|-+.. .....+...+++|+.|+++.|.+...-+ .-..+.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 35788899998887765553 22 68999999999886542 1123556789999999999998764322 2236789
Q ss_pred CCEEEccCCCCC--Cc-cccCCCCCccEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEE
Q 002163 158 LQTLCLDRCALG--DI-AIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLY 232 (958)
Q Consensus 158 Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~ 232 (958)
|+.|.+++|+++ ++ .....+++|+.|++.+| .+..--.....+..|+.|||++|. +.+++. ..++.++.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 999999999987 34 55567899999999988 333223345567788999999987 555541 1167888888888
Q ss_pred eeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
++.+.+..... -+.........+.+|+.|++..|.+...++
T Consensus 278 ls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 278 LSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccCcchhcC-----CCccchhhhcccccceeeecccCccccccc
Confidence 88876651111 111122334566778888888887755443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-07 Score=98.24 Aligned_cols=180 Identities=20% Similarity=0.205 Sum_probs=131.3
Q ss_pred ccCCCcCEEEeecCCCeecCC---CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc--cCCcccCCCC
Q 002163 83 DMLKNCPTIFLHDCKHWEVPE---GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPL 156 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~ 156 (958)
....++|.|+++.|-++.+.. .. .+|+|+.|+++.|.+........-..+++|+.|.+++|+++ .+-...-.++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 457899999999987655433 22 78999999999998764443333346889999999999987 3334455778
Q ss_pred CCCEEEccCCC-CC-CccccCCCCCccEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCCCccC--hh----hcCCCC
Q 002163 157 NLQTLCLDRCA-LG-DIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIP--PN----LLSGLS 226 (958)
Q Consensus 157 ~Lr~L~L~~~~-l~-~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p--~~----~i~~L~ 226 (958)
+|..|+|.+|. +. .-.....+..|+.|||++|++..++ .-++.++.|+.|+++.|. +.++. +. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccc
Confidence 99999999995 22 2255567889999999999888777 468999999999999887 65442 21 024678
Q ss_pred CCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
+|+.|++..|.+.. ......+..+.+|+.|.+..+.+
T Consensus 302 kL~~L~i~~N~I~~----------w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIRD----------WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCcccc----------ccccchhhccchhhhhhcccccc
Confidence 99999999888741 12355666667777777665543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2e-07 Score=72.25 Aligned_cols=59 Identities=34% Similarity=0.461 Sum_probs=36.2
Q ss_pred CCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCC
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 167 (958)
|+|++|++++|.+. .++...|.++++|++|++++|.+..+| ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566666666554 556566666666666666666666554 355666666666666654
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=8.6e-07 Score=94.42 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=29.2
Q ss_pred cccccEEEeeeCCCCcccHHHHhhcCCCcEEEEE-cceeeeeccchhhhhhhhhccccceEEecCccCcccc
Q 002163 713 FRNLKNLEVVNDESENFRIGFLERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYI 783 (958)
Q Consensus 713 ~~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 783 (958)
+.+++.|+|++|....+| .-.++|+.|.|+ |+.++.++.. .+++|+.|.+++|.++..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCch--------hhhhhhheEccCccccccc
Confidence 355666666666322444 122346666666 5555444221 1345566666655555443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=2.5e-06 Score=100.04 Aligned_cols=104 Identities=27% Similarity=0.446 Sum_probs=89.2
Q ss_pred CCcEEEeeCccCc-cCCcccCCCCCCCEEEccCCCCC-Cc-cccCCCCCccEEEccCCCCC-CCchhhcCCCCCCEEecc
Q 002163 134 NLRGLALSNMQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLS 209 (958)
Q Consensus 134 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 209 (958)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+ ..++.+++|++|++++|++. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 78999999999999999999987 33 68999999999999999988 789999999999999999
Q ss_pred CCCCCCccChhhcCC-CCCCCEEEeeCCcc
Q 002163 210 GCSKLKVIPPNLLSG-LSRLEDLYMGNTSV 238 (958)
Q Consensus 210 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~~ 238 (958)
+|.....+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99855688877 554 45777888887753
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=5.9e-07 Score=69.61 Aligned_cols=57 Identities=33% Similarity=0.580 Sum_probs=30.3
Q ss_pred CccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCC
Q 002163 179 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 179 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (958)
+|++|++++|+++.+|. .+..+++|++|++++|. +..++.+.+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555542 44555555555555554 55555544555555555555554
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.1e-06 Score=90.29 Aligned_cols=58 Identities=21% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccce
Q 002163 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKT 630 (958)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 630 (958)
+.++.|+|++| .|+.+ | . -.++|++|.+++|.+++.++.. .+++|+.|.+.+|+.+..
T Consensus 52 ~~l~~L~Is~c-~L~sL-P-~---LP~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 52 RASGRLYIKDC-DIESL-P-V---LPNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISG 109 (426)
T ss_pred cCCCEEEeCCC-CCccc-C-C---CCCCCcEEEccCCCCcccCCch----------hhhhhhheEccCcccccc
Confidence 44445555554 44444 2 0 1123555555555544444321 233455555555544443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=3.4e-06 Score=98.88 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=87.7
Q ss_pred CCCEEEccCCCCCC--ccccCCCCCccEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEe
Q 002163 157 NLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (958)
Q Consensus 157 ~Lr~L~L~~~~l~~--l~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (958)
.++.|+|++|.+.. +..++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999873 478999999999999999987 78999999999999999999844577876 899999999999
Q ss_pred eCCcccccccccccCCCcCChhhhcCC-CCCCEEEeeccC
Q 002163 234 GNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICD 272 (958)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 272 (958)
++|.+. ...+..++.+ .++..+++.+|.
T Consensus 498 s~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-----------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence 999876 3456666654 467788888776
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.4e-07 Score=105.56 Aligned_cols=104 Identities=27% Similarity=0.326 Sum_probs=53.6
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.+++++.|++.+|.+. .+... +..+.+|++|++++|.|..+. .+..+..|+.|++++|.|..+..+..+++|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 3455555555555544 22211 244555555555555555543 24445555555555555555555555555555555
Q ss_pred cCCCCCCCchh-hcCCCCCCEEeccCCC
Q 002163 186 VDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (958)
Q Consensus 186 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 212 (958)
++|.+..++.. ...+.+++.+.+.++.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555544432 3555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.4e-08 Score=95.00 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHhhccccEEEccccCCcccc-ccccccccccccceEeeccCCC
Q 002163 320 VIMQLKGIEELYLDEVPGIKNV-LYDLDIEGFLQLKHLHVQNNPF 363 (958)
Q Consensus 320 ~~~~l~~L~~L~L~~~~~~~~~-~~~l~~~~l~~L~~L~l~~~~~ 363 (958)
....+|+|.+|+|+++..+++. +.. +.+++.|++|.++.|+.
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~--~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQE--FFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHH--HHhcchheeeehhhhcC
Confidence 4445666666766665544431 111 24556666666666653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.5e-08 Score=94.98 Aligned_cols=188 Identities=22% Similarity=0.149 Sum_probs=100.9
Q ss_pred HHHhhcCCCcEEEEEcceeeeeccchhhhhhhhhccccceEEecCccCccccccCCCCCccccCCccEEEEeccCCcccc
Q 002163 732 GFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINL 811 (958)
Q Consensus 732 ~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l 811 (958)
..+..|.+|+.|.|.+..+.+- ....+..-..|++|+|+.|..++...-. --+..|+.|.+|+++.|...+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~-----I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDP-----IVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHHHhhhhccccccccCcH-----HHHHHhccccceeeccccccccchhHHH--HHHHhhhhHhhcCchHhhccchh
Confidence 3445555555555554333321 1113334456666666666555442110 11345666677777666554221
Q ss_pred cCC--ccccCcccEEEEccCcCC-ccccchHhhhcCCCccEEEEcccchhHHHhccCcccccccccccccceeccccCcc
Q 002163 812 VPS--SASFKNLTTLELWYCQRL-MNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLEN 888 (958)
Q Consensus 812 ~~~--~~~~~~L~~L~i~~C~~l-~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 888 (958)
... ..--+.|+.|++++|.+- ..-....+...+++|..|++++|-.++.-+.. ....++.|++|.++.|..
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~------~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------EFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH------HHHhcchheeeehhhhcC
Confidence 110 011256778888887542 22122456677888888888888777653222 223588899999999875
Q ss_pred cccccCCCccccCCCccEEEeccCCCCcccCcCccCCCccceEEe
Q 002163 889 LTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQ 933 (958)
Q Consensus 889 L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~p~L~~~~~ 933 (958)
+-.--.- +...-|+|.+|++.+|-.=+.+---...||.|+--|+
T Consensus 351 i~p~~~~-~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 351 IIPETLL-ELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQ 394 (419)
T ss_pred CChHHee-eeccCcceEEEEeccccCchHHHHHHHhCccccccce
Confidence 4221111 1235689999999998643221111224455554444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=1.5e-07 Score=105.45 Aligned_cols=129 Identities=24% Similarity=0.305 Sum_probs=100.7
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.+..++.+.+..|.+.. +. ..+..++.|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34555566666665542 11 22467888999999999998887668889999999999999999988889999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEEeeCCccc
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 239 (958)
++|.|..++ ++..++.|+.+++++|. +..+.. . ...+.+++.+.+.++.+.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 999888776 56668999999999988 777765 2 367888888888887664
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=4.9e-07 Score=105.16 Aligned_cols=131 Identities=23% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCccEEEcCCCcC-CCCcChhhhcCCCCCcEEEeeCccCc--cCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEE
Q 002163 108 PQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (958)
Q Consensus 108 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (958)
.+|+.|++.+... ...++..+-..++.||.|.+++-.+. .+-.-..++++|+.||++++.++.+..+++|+|||+|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4555555554322 22344444455566666666665432 12223345566666666666666666666666666666
Q ss_pred ccCCCCCCCc--hhhcCCCCCCEEeccCCCCCCccCh------hhcCCCCCCCEEEeeCCccc
Q 002163 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP------NLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 185 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~------~~i~~L~~L~~L~l~~~~~~ 239 (958)
+.+-.+..-+ .++.+|++|++||++...... -+. +.-..|++|+.|+.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 6654444322 345666666666666554221 110 00123667777776665543
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.8e-06 Score=59.93 Aligned_cols=41 Identities=39% Similarity=0.434 Sum_probs=25.0
Q ss_pred CCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccc
Q 002163 133 SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAI 173 (958)
Q Consensus 133 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~ 173 (958)
++|++|++++|.|+.+|..++++++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35666777777666666666666666666666666554443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=8e-06 Score=57.60 Aligned_cols=41 Identities=37% Similarity=0.599 Sum_probs=25.9
Q ss_pred CCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccCh
Q 002163 178 KKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (958)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 219 (958)
++|++|++++|+|+.+|..+++|++|++|++++|. +++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 35666666666777776667777777777777775 665543
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.95 E-value=3.8e-07 Score=105.75 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred cCCCcEEEEecCCCcccccchhhhhhcccCCEEEEecc-ccccceecccccccccceeecCcccccccccCCccceecCC
Q 002163 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYC-SSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPG 634 (958)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c-~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 634 (958)
.+.|+.|.+.+|..++...-.......+.|++|++++| ......+.... .....+++|+.|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL----LLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh----hhhhhcCCcCccchhhhhccCchhHH
Confidence 47777777777777776322344566778888888774 22221110000 01114466777777777665554433
Q ss_pred CcccCCCcccEEEEecCCcce
Q 002163 635 THTSKWPMLKKLEVYGCDKVK 655 (958)
Q Consensus 635 ~~~~~~~~L~~L~i~~C~~L~ 655 (958)
.....|++|+.|.+.+|..++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCCCcceEccCCCCccc
Confidence 333346777777777776644
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=7e-06 Score=95.71 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=47.0
Q ss_pred CCCcEEEeeCccCc--cCCcccCC-CCCCCEEEccCCCCC--Cc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEE
Q 002163 133 SNLRGLALSNMQFL--SLPSLFHL-PLNLQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (958)
Q Consensus 133 ~~Lr~L~L~~~~i~--~lp~~i~~-l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 206 (958)
.+|++||++|...- .-|..++. ||+||.|.+++-.+. +. .-..++++|+.||+++++++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34555555553211 11223332 355555555554432 12 3334555555555555555555 455555555555
Q ss_pred eccCCCCCCccC--hhhcCCCCCCCEEEeeCC
Q 002163 207 DLSGCSKLKVIP--PNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 207 ~l~~~~~l~~~p--~~~i~~L~~L~~L~l~~~ 236 (958)
.+.+-. +.... .+ +-+|++|++|+++..
T Consensus 201 ~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLID-LFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCC-CCchhhHHH-HhcccCCCeeecccc
Confidence 555433 22111 11 445555555555543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=1.5e-07 Score=103.32 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=102.9
Q ss_pred CCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCC
Q 002163 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 212 (958)
.|.+-+++.|.+..+-.++.-+++||.|||++|++.+...+..+.+|++|||++|.+..+|. +...+. |+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 57777888888887777888889999999999999988899999999999999999998884 333333 9999999998
Q ss_pred CCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 213 KLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 213 ~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
++.+-. +.+|.+|+.|+++.|-+.. ...+..|..|..|+.|++.+|.+
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll~~----------hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLLSE----------HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhhhc----------chhhhHHHHHHHHHHHhhcCCcc
Confidence 877764 8899999999999887651 22356677777888999988865
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=4.2e-06 Score=84.83 Aligned_cols=86 Identities=24% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCCccEEEcCCCcCCCC---cChhhhcCCCCCcEEEeeCccC----ccCCc-------ccCCCCCCCEEEccCCCCC--
Q 002163 106 EYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQF----LSLPS-------LFHLPLNLQTLCLDRCALG-- 169 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~i----~~lp~-------~i~~l~~Lr~L~L~~~~l~-- 169 (958)
....++.+++++|.+... .....+.+.+.||.-++++-.. ..+|+ .+-..++|++||||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 455666667766665321 1223345666777777766421 13332 2334456777777766544
Q ss_pred Cc----cccCCCCCccEEEccCCCCC
Q 002163 170 DI----AIIGNLKKLEILSLVDSNIE 191 (958)
Q Consensus 170 ~l----~~i~~L~~L~~L~l~~~~l~ 191 (958)
.+ .-+.+.+.|++|.|.+|.+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 11 33445566666666666554
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=2.3e-06 Score=99.18 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=24.2
Q ss_pred cceeccccCcccccccCCCccccCCCccEEEeccCCCCcc
Q 002163 878 LKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKI 917 (958)
Q Consensus 878 L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~ 917 (958)
++.|.+..|...+.-........+..++.+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 7777777777655544432211256677777777776654
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.74 E-value=4.2e-06 Score=84.83 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=18.0
Q ss_pred CCCCccEEEcCCCcCCCCcC---hhhhcCCCCCcEEEeeCccC
Q 002163 106 EYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQF 145 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~i 145 (958)
.+++|++++|+.|.+...-+ ...+++...|+.|.|.+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 34455555555554432211 22334445555555555543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=8.6e-07 Score=97.55 Aligned_cols=124 Identities=25% Similarity=0.218 Sum_probs=80.2
Q ss_pred CCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEE
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLC 162 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~ 162 (958)
|.++...+++.|.+..+.... -++.+++|+|++|.+. .+. .+..+.+|++|||+.|.+..+|. +...+ +|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 456666677776665555544 2567777777777665 222 35677777777777777777765 22223 377777
Q ss_pred ccCCCCCCccccCCCCCccEEEccCCCCCCCc--hhhcCCCCCCEEeccCCC
Q 002163 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 212 (958)
+++|.++.+..+.+|++|+.||+++|-+.... .-++.|..|+.|.|.||.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777777777777777777777777544321 135666667777777765
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00016 Score=67.80 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCC-CCCCEEEccCCCCC---CccccCCCCCccEE
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLP-LNLQTLCLDRCALG---DIAIIGNLKKLEIL 183 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l-~~Lr~L~L~~~~l~---~l~~i~~L~~L~~L 183 (958)
.....+++..|++. .++. |..++.|..|.+.+|.|..+-..+..+ ++|..|.|.+|.|. ++..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 45566777777654 2332 677888888888888888775555543 66888888888765 34666777888888
Q ss_pred EccCCCCCCCch----hhcCCCCCCEEeccCCC
Q 002163 184 SLVDSNIEQLPE----EMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 184 ~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~ 212 (958)
.+-+|.+++-+. -+.++++|++||..+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888887765542 36788888888887654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00024 Score=66.75 Aligned_cols=102 Identities=25% Similarity=0.349 Sum_probs=45.5
Q ss_pred CCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcC-CCCCCEEeccCCCCCCc---cChhhcCCCCCCCEEEe
Q 002163 158 LQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQ-LTQLRLFDLSGCSKLKV---IPPNLLSGLSRLEDLYM 233 (958)
Q Consensus 158 Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~---~p~~~i~~L~~L~~L~l 233 (958)
.-.+||++|.+..+..+..+..|.+|.+.+|+|+.+-..+.. +++|..|.+.+|. +.+ +.+ +..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceeee
Confidence 334444444444444444444444444444444444333322 2334555554443 222 222 344555555555
Q ss_pred eCCcccccccccccCCCcCChhhhcCCCCCCEEEeec
Q 002163 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (958)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (958)
-+|.+. .+......-+..+++|+.|+...
T Consensus 121 l~Npv~--------~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVE--------HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchh--------cccCceeEEEEecCcceEeehhh
Confidence 555433 22233444455555555555543
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00013 Score=72.30 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=28.9
Q ss_pred CcEEEeeCccCccCCc--ccC-CCCCCCEEEccCCCCCCc----cccCCCCCccEEEccCCCC
Q 002163 135 LRGLALSNMQFLSLPS--LFH-LPLNLQTLCLDRCALGDI----AIIGNLKKLEILSLVDSNI 190 (958)
Q Consensus 135 Lr~L~L~~~~i~~lp~--~i~-~l~~Lr~L~L~~~~l~~l----~~i~~L~~L~~L~l~~~~l 190 (958)
+..|.+-++.|...-+ .|+ ...+++.|||.+|.|++. .-+.+|++|++|+++.|.+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 3355555555543321 232 335667777777766643 2234556666666665543
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=2.4e-05 Score=68.27 Aligned_cols=110 Identities=21% Similarity=0.293 Sum_probs=56.8
Q ss_pred CccEEEcCCCcCCCCcChh--hhcCCCCCcEEEeeCccCccCCcccCCC-CCCCEEEccCCCCCCc-cccCCCCCccEEE
Q 002163 109 QLEFFCMSPRDHSIKIPNH--VFAGMSNLRGLALSNMQFLSLPSLFHLP-LNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (958)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~i~~lp~~i~~l-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 184 (958)
.+..++++++.+. .+++. .+..-.+|...+|++|.++++|+.|... +-..+|++.+|.|+++ ..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3444555555432 22221 1234445555666666666666544332 3555566666555543 3455555555555
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChh
Q 002163 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (958)
Q Consensus 185 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 220 (958)
++.|.+...|+-|..|.+|-.|+..++. ...+|.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 5555555555555555555555555554 4444443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.06 E-value=0.00043 Score=67.82 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=46.9
Q ss_pred hhccccEEEccccCCccccccc--cccccccccceEeeccCCCeeEEecCCcc---cccccccccchhhcccccc----c
Q 002163 323 QLKGIEELYLDEVPGIKNVLYD--LDIEGFLQLKHLHVQNNPFILFIVDSMAW---VRYNAFLLLESLVLHNLIH----L 393 (958)
Q Consensus 323 ~l~~L~~L~L~~~~~~~~~~~~--l~~~~l~~L~~L~l~~~~~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~----l 393 (958)
.+++|+.|+|.+..-....... .....++.|++|.+..|--... ....+ +.-..+|+|..|...+-.. +
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~--G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE--GVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc--cHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 3567777777663211100000 0113445677777777742110 00111 2233457777776655221 1
Q ss_pred cceeccCCCchhccCccEEEEecCCCcccc
Q 002163 394 EKICLGQLRAESFYKLKIIKVRNCDKLKNI 423 (958)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 423 (958)
..+....+..+.+|-|..|.+.+ ++++..
T Consensus 290 ~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 290 LDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred eeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 11222334456778888888877 455554
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00064 Score=67.60 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCc
Q 002163 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 636 (958)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 636 (958)
+.+++|+...|......-.......+|++..+.+..|+ +++.......+ .+|.+.-|.+.. .++.+|.....
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se------~~p~~~~LnL~~-~~idswasvD~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE------PFPSLSCLNLGA-NNIDSWASVDA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC------CCCcchhhhhcc-cccccHHHHHH
Confidence 45666777666543322111233456788888888888 66654432221 456666666654 34555543333
Q ss_pred ccCCCcccEEEEecCCcceeec
Q 002163 637 TSKWPMLKKLEVYGCDKVKIFT 658 (958)
Q Consensus 637 ~~~~~~L~~L~i~~C~~L~~l~ 658 (958)
...+|.|..|.+.+-|-...+.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HcCCchhheeeccCCccccccc
Confidence 3467888888888877665543
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.94 E-value=6.8e-05 Score=65.49 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCC-CccccCCCCCccEEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALG-DIAIIGNLKKLEILS 184 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~-~l~~i~~L~~L~~L~ 184 (958)
...+|++.++++|.+. .+|..+-..++-+..|++++|.+..+|..+..++.||.|+++.|.+. .+..+..|.+|-.||
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4456777777777765 56666656666777888888888888877778888888888888866 356677788888888
Q ss_pred ccCCCCCCCchh
Q 002163 185 LVDSNIEQLPEE 196 (958)
Q Consensus 185 l~~~~l~~lp~~ 196 (958)
..++.+..+|-+
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 888877777754
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=5e-05 Score=74.45 Aligned_cols=107 Identities=24% Similarity=0.321 Sum_probs=81.3
Q ss_pred CCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEE
Q 002163 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLY 232 (958)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~ 232 (958)
.+.+.+.|++.||++.++..+.+++.|++|.|+-|+|++|- .+..+++|+.|+|..|. +.++.+ ..+.++++|++|+
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 35667888999999999888889999999999999998885 57889999999999887 666653 2366888899998
Q ss_pred eeCCcccccccccccCCCcCChhhhcCCCCCCEEEe
Q 002163 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (958)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (958)
+..|.-.. ....+.....|.-|++|++|+=
T Consensus 95 L~ENPCc~------~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCG------EAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCccc------ccchhHHHHHHHHcccchhccC
Confidence 88775431 1222344566777888887763
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.0011 Score=65.30 Aligned_cols=106 Identities=26% Similarity=0.331 Sum_probs=50.9
Q ss_pred CCCCEEEccCCCCCCccccCCCCCccEEEccCC--CCC-CCchhhcCCCCCCEEeccCCCCCC---ccChhhcCCCCCCC
Q 002163 156 LNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS--NIE-QLPEEMAQLTQLRLFDLSGCSKLK---VIPPNLLSGLSRLE 229 (958)
Q Consensus 156 ~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~l~---~~p~~~i~~L~~L~ 229 (958)
..|+.|.+.+++++.+..+-.|++|++|.++.| .+. .++.-..++++|++|++++|. ++ .+++ +.++.+|.
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELENLK 119 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcchh
Confidence 344444444444444455555555555555555 322 344344444666666666554 33 2222 34555555
Q ss_pred EEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccC
Q 002163 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
.|++++|... .-.+..-..+.-+++|..|+-....
T Consensus 120 ~Ldl~n~~~~--------~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVT--------NLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCcc--------ccccHHHHHHHHhhhhccccccccC
Confidence 6666555433 1112223344455666665544433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0022 Score=63.29 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=55.7
Q ss_pred hcCCCCCcEEEeeCcc--Cc-cCCcccCCCCCCCEEEccCCCCCCc---cccCCCCCccEEEccCCCCCCCc----hhhc
Q 002163 129 FAGMSNLRGLALSNMQ--FL-SLPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLP----EEMA 198 (958)
Q Consensus 129 ~~~l~~Lr~L~L~~~~--i~-~lp~~i~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp----~~i~ 198 (958)
|..+++|+.|.++.|+ +. .++....++++|++|++++|+|..+ ..+.++.+|..||+.+|..+.+- .-+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4556666677776663 22 3444445557778888887776654 45566777888888888766552 2466
Q ss_pred CCCCCCEEeccCCC
Q 002163 199 QLTQLRLFDLSGCS 212 (958)
Q Consensus 199 ~L~~L~~L~l~~~~ 212 (958)
-+++|.+|+-....
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 78888888877665
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.036 Score=50.57 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=14.9
Q ss_pred cChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEcc
Q 002163 124 IPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLD 164 (958)
Q Consensus 124 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~ 164 (958)
+....|.+++.|+.+.+.++ +..++. .|..+.+|+++.+.
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred eChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44444445544555554442 333332 34444444444443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0043 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=12.5
Q ss_pred CccEEEccCCCCCCCchhhcC
Q 002163 179 KLEILSLVDSNIEQLPEEMAQ 199 (958)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~i~~ 199 (958)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0011 Score=65.29 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=40.2
Q ss_pred CCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc
Q 002163 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI 171 (958)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l 171 (958)
+.+.+.|++.++.+. ++ ++..+|+.|.||.||-|.|+.+. .+..+++|+.|.|+.|.|.++
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 445666677776654 22 44678888888888888887764 356666666666666665543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0086 Score=34.92 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=15.7
Q ss_pred CCcEEEeeCccCccCCcccCC
Q 002163 134 NLRGLALSNMQFLSLPSLFHL 154 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp~~i~~ 154 (958)
+|++||+++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877776654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.18 E-value=0.054 Score=49.40 Aligned_cols=106 Identities=21% Similarity=0.349 Sum_probs=63.8
Q ss_pred cChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcC
Q 002163 124 IPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQ 199 (958)
Q Consensus 124 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~ 199 (958)
+++..|.++++|+.+.+.. .+..+++ +|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788999999999875 5667754 6788888999998875 6554 5677787888888865 5555553 4566
Q ss_pred CCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeC
Q 002163 200 LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (958)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (958)
+++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888888653 566777667776 888877654
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.96 E-value=0.057 Score=53.52 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=47.1
Q ss_pred cCCCCCcEEEeeCccCc-----cCCcccCCCCCCCEEEccCCCCCC------------ccccCCCCCccEEEccCCCCC-
Q 002163 130 AGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD------------IAIIGNLKKLEILSLVDSNIE- 191 (958)
Q Consensus 130 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~------------l~~i~~L~~L~~L~l~~~~l~- 191 (958)
..+..+..++||||.|. .+...|.+-.+||..+++.-.... ++.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44778888899998876 244456666777777777643221 133455566666666665433
Q ss_pred CCch----hhcCCCCCCEEeccCCC
Q 002163 192 QLPE----EMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 192 ~lp~----~i~~L~~L~~L~l~~~~ 212 (958)
+.|+ -|++-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 2222 23444555555555554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.012 Score=55.83 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=49.0
Q ss_pred cccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccc
Q 002163 376 YNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (958)
Q Consensus 376 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (958)
+..++.++.|.+.+|..+.+|+...+.. .+++|+.|+|++|+++++- .+..+..+++|+.|.+.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 3455677778888888888886655444 7788999999999888874 3345666777777777665443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.0097 Score=56.37 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=29.8
Q ss_pred ccccCCccEEEEeccCCcccc--cCCccccCcccEEEEccCcCCccccchHhhhcCCCccEEEEcccc
Q 002163 791 DSITENLESLEVWWCENLINL--VPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 856 (958)
Q Consensus 791 ~~~l~~L~~L~i~~c~~l~~l--~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~ 856 (958)
+..+++++.|.+.+|..+... .--.+-.++|+.|+|++|++|++-... .+..+++|+.|.+++-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 444555555555555555221 001123455555555555555554332 23334455555554443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.40 E-value=0.048 Score=29.38 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=5.9
Q ss_pred CccEEEccCCCCCCCc
Q 002163 179 KLEILSLVDSNIEQLP 194 (958)
Q Consensus 179 ~L~~L~l~~~~l~~lp 194 (958)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.30 E-value=0.083 Score=28.46 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=6.5
Q ss_pred CCcEEEeeCccCccCC
Q 002163 134 NLRGLALSNMQFLSLP 149 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp 149 (958)
+||+|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.005 Score=59.20 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=51.1
Q ss_pred hcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEe
Q 002163 129 FAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFD 207 (958)
Q Consensus 129 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 207 (958)
+..++...+||++.+.+..+-..|+.++.|..|+++.+.+..+ .+++.+..++.+++..|+.+.+|.++++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 4556667777777776666655566666666666666655543 555555566666666555666666666666666666
Q ss_pred ccCCC
Q 002163 208 LSGCS 212 (958)
Q Consensus 208 l~~~~ 212 (958)
..++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 55554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.15 E-value=0.0061 Score=58.62 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=40.2
Q ss_pred cCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCE
Q 002163 152 FHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 230 (958)
|.....-..||++.+++..+ ..+..++.|..||++.+.+..+|.+++.+..++++++..|. ....|.. .+++++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 33344444555555544433 44444455555555555555555555555555555554444 4444544 445555555
Q ss_pred EEeeCC
Q 002163 231 LYMGNT 236 (958)
Q Consensus 231 L~l~~~ 236 (958)
++.-++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.24 E-value=0.35 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=11.3
Q ss_pred CCccEEEccCCCCCCCchh
Q 002163 178 KKLEILSLVDSNIEQLPEE 196 (958)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~ 196 (958)
++|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.24 E-value=0.35 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=11.3
Q ss_pred CCccEEEccCCCCCCCchh
Q 002163 178 KKLEILSLVDSNIEQLPEE 196 (958)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~ 196 (958)
++|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666654
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.28 E-value=0.82 Score=27.79 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=18.1
Q ss_pred CCCCCEEeccCCCCCCccChhhc
Q 002163 200 LTQLRLFDLSGCSKLKVIPPNLL 222 (958)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i 222 (958)
|++|++|++++|. ++.+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5688999999997 888988754
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.28 E-value=0.82 Score=27.79 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=18.1
Q ss_pred CCCCCEEeccCCCCCCccChhhc
Q 002163 200 LTQLRLFDLSGCSKLKVIPPNLL 222 (958)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i 222 (958)
|++|++|++++|. ++.+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5688999999997 888988754
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.00 E-value=0.84 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.0
Q ss_pred CCCccEEEeccCCCCcc
Q 002163 901 FPSLEDLFVIECPKMKI 917 (958)
Q Consensus 901 ~~sL~~L~i~~C~~l~~ 917 (958)
|+.|++|++.+|++|+.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888999999988875
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.13 E-value=0.88 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.6
Q ss_pred cCcccEEEEccCcCCccc
Q 002163 818 FKNLTTLELWYCQRLMNL 835 (958)
Q Consensus 818 ~~~L~~L~i~~C~~l~~l 835 (958)
+++|++|++++|+++++-
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356667777777766654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.44 E-value=3.8 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.0
Q ss_pred CccEEEccCCCCCCCch
Q 002163 179 KLEILSLVDSNIEQLPE 195 (958)
Q Consensus 179 ~L~~L~l~~~~l~~lp~ 195 (958)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777774
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.99 E-value=5.5 Score=24.31 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.4
Q ss_pred CCCEEEccCCCC
Q 002163 157 NLQTLCLDRCAL 168 (958)
Q Consensus 157 ~Lr~L~L~~~~l 168 (958)
+|++|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.60 E-value=10 Score=22.33 Aligned_cols=12 Identities=42% Similarity=0.371 Sum_probs=4.6
Q ss_pred CCCCEEEccCCC
Q 002163 156 LNLQTLCLDRCA 167 (958)
Q Consensus 156 ~~Lr~L~L~~~~ 167 (958)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 344444444444
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=45.13 E-value=0.61 Score=52.66 Aligned_cols=177 Identities=20% Similarity=0.156 Sum_probs=85.5
Q ss_pred cCEEEeecCCCeecC-----CCC-CCCCccEEEcCCCcCCCCcCh---hhhcCC-CCCcEEEeeCccCc-----cCCccc
Q 002163 88 CPTIFLHDCKHWEVP-----EGL-EYPQLEFFCMSPRDHSIKIPN---HVFAGM-SNLRGLALSNMQFL-----SLPSLF 152 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~-----~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~l-~~Lr~L~L~~~~i~-----~lp~~i 152 (958)
++++++.+|.+..-. ... ..+.|..|++++|.+...--. ..+... ..+++|++..|.+. .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566666666553221 111 456666677766665421100 111222 34556666666544 234455
Q ss_pred CCCCCCCEEEccCCCCCC-----c-ccc----CCCCCccEEEccCCCCCCC-----chhhcCCCC-CCEEeccCCCCCCc
Q 002163 153 HLPLNLQTLCLDRCALGD-----I-AII----GNLKKLEILSLVDSNIEQL-----PEEMAQLTQ-LRLFDLSGCSKLKV 216 (958)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~-----l-~~i----~~L~~L~~L~l~~~~l~~l-----p~~i~~L~~-L~~L~l~~~~~l~~ 216 (958)
....+++.++++.|.+.. + ..+ ....++++|++.+|.++.- -..+..... ++.|++..|. +.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 556667777777666431 1 222 2356666666666655411 112333444 4456666554 332
Q ss_pred c-----ChhhcCCC-CCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 217 I-----PPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 217 ~-----p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
. .+. +..+ ..++++++..|.+.. .........+....+++.+.+..+.+
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~-------~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITE-------KGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccc-------cchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2 111 3333 455666666666541 11122334444555566666655543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.22 E-value=21 Score=22.16 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=7.2
Q ss_pred CCCEEEccCCCCC
Q 002163 157 NLQTLCLDRCALG 169 (958)
Q Consensus 157 ~Lr~L~L~~~~l~ 169 (958)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666555543
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=25.72 E-value=4.2 Score=46.06 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=103.4
Q ss_pred CCcCEEEeecCCCee-----cCCCCC--CCCccEEEcCCCcCCCC----cChhhhcCCCCCcEEEeeCccCc-----cCC
Q 002163 86 KNCPTIFLHDCKHWE-----VPEGLE--YPQLEFFCMSPRDHSIK----IPNHVFAGMSNLRGLALSNMQFL-----SLP 149 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~-----l~~~~~--~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~i~-----~lp 149 (958)
..+..+++.+|.+.. +-.... -..+++|.+..|.+... +... +....++++++++.|.+. .++
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHHHh
Confidence 456678888877642 112222 25677788877765432 3333 455889999999999764 233
Q ss_pred cccC----CCCCCCEEEccCCCCCCc------cccCCCCC-ccEEEccCCCCC-----CCchhhcCC-CCCCEEeccCCC
Q 002163 150 SLFH----LPLNLQTLCLDRCALGDI------AIIGNLKK-LEILSLVDSNIE-----QLPEEMAQL-TQLRLFDLSGCS 212 (958)
Q Consensus 150 ~~i~----~l~~Lr~L~L~~~~l~~l------~~i~~L~~-L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~ 212 (958)
..+. ...++++|.+.+|.++.. ..+..... ++.|++..|.+. .+.+.+..+ ..++++++++|.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 3444 578999999999997732 44666666 777999998765 344566777 789999999998
Q ss_pred CCCccCh----hhcCCCCCCCEEEeeCCccc
Q 002163 213 KLKVIPP----NLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 213 ~l~~~p~----~~i~~L~~L~~L~l~~~~~~ 239 (958)
+..... ..+..+..+++|.+.++.+.
T Consensus 274 -i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 274 -ITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred -ccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 443221 22566778999999888765
No 91
>PF14162 YozD: YozD-like protein
Probab=24.84 E-value=73 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhCCccc
Q 002163 19 MQETRDRLYALVHKLKDYCLLL 40 (958)
Q Consensus 19 ~e~~~~~~~~~~~~L~~~~l~q 40 (958)
-|++++.. +++|+.||++-
T Consensus 10 TEEIAefF---y~eL~kRGyvP 28 (57)
T PF14162_consen 10 TEEIAEFF---YHELVKRGYVP 28 (57)
T ss_pred HHHHHHHH---HHHHHHccCCC
Confidence 57888888 99999999985
Done!