Query 002163
Match_columns 958
No_of_seqs 565 out of 5140
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-42 4.6E-47 421.4 30.9 684 108-949 50-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-39 9.6E-44 392.2 29.3 655 85-893 49-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5E-37 1.7E-41 369.8 40.6 176 89-278 7-188 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-35 8E-40 355.2 39.6 553 74-776 14-593 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-34 3.6E-39 344.7 34.1 192 88-291 13-212 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-34 2.1E-38 338.1 36.9 178 89-280 15-198 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-33 7.2E-38 333.5 34.3 186 73-273 20-216 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.7E-33 9.2E-38 332.6 33.2 150 111-276 15-168 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-31 1.4E-35 324.0 30.9 169 90-273 8-186 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 9.5E-31 3.3E-35 308.6 32.1 139 97-239 18-162 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-30 1.1E-34 315.9 38.1 524 72-727 12-560 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-30 7.5E-35 303.8 31.3 170 91-273 10-184 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-30 5.6E-35 306.6 27.8 183 75-272 18-211 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-29 4.9E-34 296.8 26.0 188 75-276 16-211 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-27 7.3E-32 284.2 35.6 173 96-280 41-220 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-28 8E-33 284.1 26.2 143 89-238 3-150 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 2.3E-27 7.8E-32 284.5 23.8 162 406-626 672-838 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-26 4.7E-31 269.2 29.1 121 111-239 3-128 (520)
19 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-26 1.1E-30 273.9 31.5 506 75-652 42-578 (635)
20 4eco_A Uncharacterized protein 99.9 5.6E-27 1.9E-31 277.4 24.1 83 529-626 511-598 (636)
21 4eco_A Uncharacterized protein 99.9 4E-27 1.4E-31 278.7 20.7 193 86-293 81-387 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-26 9.3E-31 268.9 25.2 144 88-238 33-181 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-26 2.1E-30 265.9 26.9 149 106-273 29-181 (562)
24 4ecn_A Leucine-rich repeat pro 99.9 4.1E-26 1.4E-30 273.6 23.3 72 188-272 435-526 (876)
25 1o6v_A Internalin A; bacterial 99.9 3.1E-25 1.1E-29 253.2 26.0 346 85-546 45-390 (466)
26 1o6v_A Internalin A; bacterial 99.9 1.1E-24 3.8E-29 248.7 27.6 347 106-573 44-390 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 4.6E-24 1.6E-28 243.6 27.2 381 91-594 15-406 (455)
28 1jl5_A Outer protein YOPM; leu 99.9 8.3E-25 2.9E-29 246.9 20.5 352 104-599 7-372 (454)
29 4fmz_A Internalin; leucine ric 99.9 5.9E-24 2E-28 233.1 24.3 170 84-273 42-211 (347)
30 3v47_A TOLL-like receptor 5B a 99.9 7.1E-24 2.4E-28 242.0 25.1 150 112-278 14-171 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.7E-28 238.0 24.7 263 85-450 41-303 (457)
32 3bz5_A Internalin-J, INLJ; leu 99.9 5.6E-23 1.9E-27 232.2 28.2 314 106-572 40-353 (457)
33 4fmz_A Internalin; leucine ric 99.9 3.5E-23 1.2E-27 226.9 24.4 303 106-480 42-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 3.5E-23 1.2E-27 230.7 23.2 155 104-274 41-199 (390)
35 1jl5_A Outer protein YOPM; leu 99.9 1.4E-23 4.9E-28 236.8 19.9 180 85-291 10-203 (454)
36 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4.2E-27 226.3 24.5 301 85-480 44-350 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 5.8E-22 2E-26 227.4 28.4 176 89-278 14-193 (477)
38 3oja_B Anopheles plasmodium-re 99.9 3.9E-22 1.3E-26 234.6 23.9 155 104-274 47-205 (597)
39 3oja_B Anopheles plasmodium-re 99.9 8.3E-22 2.8E-26 231.9 24.3 301 85-480 50-356 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.4E-26 223.1 25.5 303 74-444 21-331 (477)
41 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-20 6.1E-25 203.6 17.8 154 109-279 34-190 (332)
42 4fcg_A Uncharacterized protein 99.8 1.6E-20 5.6E-25 202.6 16.6 173 85-272 80-264 (328)
43 1xku_A Decorin; proteoglycan, 99.8 8.9E-20 3E-24 198.0 22.4 154 109-278 32-188 (330)
44 4fcg_A Uncharacterized protein 99.8 6E-20 2.1E-24 198.2 17.6 222 131-442 79-310 (328)
45 1xku_A Decorin; proteoglycan, 99.8 3.3E-19 1.1E-23 193.6 22.9 171 87-276 32-207 (330)
46 3ogk_B Coronatine-insensitive 99.8 2.7E-21 9.2E-26 228.8 5.8 127 131-270 110-252 (592)
47 1ogq_A PGIP-2, polygalacturona 99.8 2E-20 6.7E-25 200.9 11.7 244 86-393 50-304 (313)
48 3ogk_B Coronatine-insensitive 99.8 1.7E-20 5.8E-25 221.9 9.3 336 529-912 190-548 (592)
49 2ft3_A Biglycan; proteoglycan, 99.8 5.4E-19 1.9E-23 191.9 19.5 287 87-418 34-331 (332)
50 1ozn_A Reticulon 4 receptor; N 99.8 5E-19 1.7E-23 187.7 18.6 183 83-278 29-218 (285)
51 2z80_A TOLL-like receptor 2, v 99.8 5.8E-19 2E-23 193.5 19.3 257 91-362 36-312 (353)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-19 5E-24 194.1 13.1 249 108-423 50-307 (313)
53 2p1m_B Transport inhibitor res 99.8 1.3E-20 4.3E-25 223.2 4.1 383 468-911 129-540 (594)
54 3zyj_A Leucine-rich repeat-con 99.8 8.8E-19 3E-23 198.2 18.7 175 88-277 45-223 (440)
55 2z66_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 191.5 13.6 177 85-275 27-213 (306)
56 2z80_A TOLL-like receptor 2, v 99.8 1.9E-18 6.6E-23 189.3 20.1 171 106-292 29-207 (353)
57 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 198.2 18.6 175 88-277 56-234 (452)
58 1ozn_A Reticulon 4 receptor; N 99.8 3.4E-18 1.2E-22 181.3 20.5 175 88-276 13-192 (285)
59 2p1m_B Transport inhibitor res 99.8 3E-20 1E-24 219.9 4.6 63 530-594 455-517 (594)
60 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-17 7.6E-22 191.7 25.5 255 87-444 41-295 (622)
61 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-20 1.7E-24 210.7 1.3 158 108-273 3-182 (461)
62 3zyi_A Leucine-rich repeat-con 99.8 7.1E-18 2.4E-22 191.4 18.5 223 83-362 72-301 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 5.9E-18 2E-22 191.4 17.7 230 75-362 54-290 (440)
64 2o6q_A Variable lymphocyte rec 99.8 2.8E-17 9.7E-22 172.3 21.0 193 87-293 17-215 (270)
65 3o53_A Protein LRIM1, AGAP0063 99.8 2.4E-19 8.3E-24 193.0 5.0 242 107-394 33-276 (317)
66 1p9a_G Platelet glycoprotein I 99.8 2.3E-17 7.8E-22 174.4 19.5 195 84-293 8-205 (290)
67 1h6u_A Internalin H; cell adhe 99.7 6.2E-17 2.1E-21 173.0 19.9 191 84-295 39-229 (308)
68 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.4E-21 168.2 20.3 188 73-274 25-218 (270)
69 2z66_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 173.4 19.0 235 89-336 10-259 (306)
70 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-16 6.3E-21 184.0 23.7 138 108-277 40-177 (622)
71 1z7x_W Ribonuclease inhibitor; 99.7 2.9E-19 1E-23 204.2 -0.0 181 85-273 27-239 (461)
72 2xwt_C Thyrotropin receptor; s 99.7 5.5E-17 1.9E-21 166.8 16.4 198 76-290 23-233 (239)
73 1p9a_G Platelet glycoprotein I 99.7 1.1E-16 3.8E-21 169.2 18.6 198 106-362 8-206 (290)
74 2z62_A TOLL-like receptor 4, v 99.7 9.4E-17 3.2E-21 169.2 17.4 172 96-279 17-195 (276)
75 1wwl_A Monocyte differentiatio 99.7 9E-18 3.1E-22 180.2 9.4 177 87-275 44-242 (312)
76 2z62_A TOLL-like receptor 4, v 99.7 8.2E-17 2.8E-21 169.7 16.6 198 83-294 25-235 (276)
77 3m19_A Variable lymphocyte rec 99.7 2.2E-16 7.7E-21 163.5 18.8 175 87-275 15-193 (251)
78 3oja_A Leucine-rich immune mol 99.7 4.9E-17 1.7E-21 185.3 11.9 123 109-239 35-157 (487)
79 1h6u_A Internalin H; cell adhe 99.7 5.9E-16 2E-20 165.4 19.0 186 72-278 49-234 (308)
80 3rfs_A Internalin B, repeat mo 99.7 8.9E-16 3E-20 161.0 19.6 176 84-274 39-218 (272)
81 1h6t_A Internalin B; cell adhe 99.7 5E-16 1.7E-20 164.3 17.7 173 84-277 44-216 (291)
82 3o53_A Protein LRIM1, AGAP0063 99.7 8.2E-18 2.8E-22 181.0 3.3 236 85-362 33-273 (317)
83 1wwl_A Monocyte differentiatio 99.7 3.1E-17 1.1E-21 176.0 7.5 202 107-362 42-264 (312)
84 2xwt_C Thyrotropin receptor; s 99.7 2.6E-16 8.7E-21 161.8 13.7 167 95-277 20-196 (239)
85 3oja_A Leucine-rich immune mol 99.7 4.3E-17 1.5E-21 185.7 5.9 236 85-391 33-273 (487)
86 3rfs_A Internalin B, repeat mo 99.7 1.2E-15 4.2E-20 159.9 16.2 173 106-294 39-216 (272)
87 3m19_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 153.3 17.8 165 72-239 22-192 (251)
88 1h6t_A Internalin B; cell adhe 99.6 2.1E-15 7.1E-20 159.5 15.2 169 106-295 44-212 (291)
89 3e6j_A Variable lymphocyte rec 99.6 8.4E-15 2.9E-19 148.9 16.8 149 88-239 21-172 (229)
90 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.9E-20 166.2 8.3 130 108-238 91-236 (310)
91 1m9s_A Internalin B; cell inva 99.6 5.2E-15 1.8E-19 171.7 16.4 175 83-278 40-214 (605)
92 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.2E-19 157.7 19.1 194 72-279 17-220 (350)
93 2v9t_B SLIT homolog 2 protein 99.6 7.7E-15 2.6E-19 148.0 15.5 148 89-239 14-165 (220)
94 2ast_B S-phase kinase-associat 99.6 1.5E-15 5.3E-20 165.2 9.8 199 110-362 49-258 (336)
95 2o6s_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 146.5 14.3 169 89-278 10-183 (208)
96 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-14 4.3E-19 146.5 15.0 149 89-239 14-166 (220)
97 4ezg_A Putative uncharacterize 99.6 1.2E-14 4.2E-19 144.0 13.8 148 85-239 43-194 (197)
98 1xeu_A Internalin C; cellular 99.6 5.6E-15 1.9E-19 153.6 11.4 168 88-277 21-188 (263)
99 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.6E-19 144.5 12.1 150 106-274 42-194 (197)
100 4ay9_X Follicle-stimulating ho 99.6 2E-14 6.7E-19 156.8 15.2 120 111-235 12-137 (350)
101 4glp_A Monocyte differentiatio 99.6 1.3E-14 4.4E-19 155.5 12.7 193 86-294 91-305 (310)
102 1m9s_A Internalin B; cell inva 99.5 1.9E-14 6.4E-19 167.0 12.9 169 105-294 40-208 (605)
103 2xot_A Amphoterin-induced prot 99.5 3E-14 1E-18 156.0 13.7 171 89-273 21-201 (361)
104 2v9t_B SLIT homolog 2 protein 99.5 9E-14 3.1E-18 140.2 15.5 147 111-273 14-164 (220)
105 2ast_B S-phase kinase-associat 99.5 8.5E-15 2.9E-19 159.3 8.0 176 133-362 47-233 (336)
106 1xeu_A Internalin C; cellular 99.5 8.6E-14 2.9E-18 144.6 15.1 148 83-239 38-185 (263)
107 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.8E-18 157.0 18.2 175 86-294 59-241 (571)
108 2o6s_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 140.9 12.4 148 83-239 25-178 (208)
109 2ca6_A RAN GTPase-activating p 99.5 2.3E-15 7.8E-20 167.0 2.4 39 153-191 91-135 (386)
110 2ell_A Acidic leucine-rich nuc 99.5 8.9E-14 3E-18 134.0 12.9 140 131-279 22-165 (168)
111 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 138.9 15.7 148 110-274 21-172 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.2E-18 137.5 15.2 147 111-273 14-165 (220)
113 2xot_A Amphoterin-induced prot 99.5 9.1E-14 3.1E-18 152.2 12.8 165 72-239 26-202 (361)
114 2ca6_A RAN GTPase-activating p 99.4 1.9E-14 6.5E-19 159.6 3.5 176 139-362 15-227 (386)
115 3goz_A Leucine-rich repeat-con 99.4 1.2E-14 4.2E-19 159.3 1.9 127 110-239 24-180 (362)
116 3cvr_A Invasion plasmid antige 99.4 8.8E-13 3E-17 151.1 17.1 172 71-275 66-244 (571)
117 2je0_A Acidic leucine-rich nuc 99.4 2.7E-13 9.1E-18 127.6 9.6 129 132-269 16-148 (149)
118 2ell_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 129.2 10.2 128 108-238 24-159 (168)
119 1dce_A Protein (RAB geranylger 99.4 2.9E-15 9.8E-20 172.8 -7.8 189 85-288 348-565 (567)
120 2wfh_A SLIT homolog 2 protein 99.4 1.9E-12 6.3E-17 127.3 13.4 124 111-239 13-139 (193)
121 2je0_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 127.1 7.4 123 108-233 17-147 (149)
122 3goz_A Leucine-rich repeat-con 99.4 3.1E-13 1.1E-17 148.1 8.5 155 113-276 3-182 (362)
123 4b8c_D Glucose-repressible alc 99.4 7.1E-13 2.4E-17 158.0 10.3 151 85-239 172-329 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.9E-17 127.1 8.7 106 131-238 17-125 (176)
125 1w8a_A SLIT protein; signaling 99.3 3.5E-12 1.2E-16 125.4 12.0 103 134-237 30-137 (192)
126 1w8a_A SLIT protein; signaling 99.3 4E-12 1.4E-16 125.0 12.2 125 136-274 11-139 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.3 6E-13 2.1E-17 129.1 5.4 130 106-239 17-153 (176)
128 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 120.8 13.7 124 136-273 13-138 (193)
129 2o6r_A Variable lymphocyte rec 99.3 2.9E-11 1E-15 117.3 14.3 106 133-239 28-137 (177)
130 2o6r_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 116.8 14.3 122 89-212 10-135 (177)
131 1dce_A Protein (RAB geranylger 99.2 1.8E-11 6.2E-16 141.1 12.0 123 134-268 442-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.2 2E-13 6.7E-18 135.4 -6.6 136 128-267 43-180 (198)
133 4b8c_D Glucose-repressible alc 99.2 2.1E-11 7.1E-16 145.4 8.4 131 106-239 222-354 (727)
134 2r9u_A Variable lymphocyte rec 99.2 1.7E-10 5.8E-15 111.0 12.0 101 136-239 15-118 (174)
135 3g39_A Variable lymphocyte rec 99.1 2E-10 7E-15 110.1 11.8 102 135-239 11-115 (170)
136 1ds9_A Outer arm dynein; leuci 99.1 5.8E-13 2E-17 132.0 -6.9 142 87-232 24-180 (198)
137 2r9u_A Variable lymphocyte rec 99.1 4.9E-10 1.7E-14 107.8 11.3 103 111-218 15-121 (174)
138 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.5E-14 118.2 13.4 188 85-288 48-326 (329)
139 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 105.2 11.1 98 111-212 12-113 (170)
140 3sb4_A Hypothetical leucine ri 98.9 3.1E-09 1.1E-13 114.5 9.1 192 84-290 23-304 (329)
141 2ifg_A High affinity nerve gro 98.7 2.5E-08 8.5E-13 108.4 10.2 99 138-239 13-116 (347)
142 3un9_A NLR family member X1; l 98.7 1.2E-09 4.2E-14 118.9 -1.4 61 177-238 154-223 (372)
143 2ifg_A High affinity nerve gro 98.6 7.1E-08 2.4E-12 104.7 10.4 98 112-212 12-114 (347)
144 3un9_A NLR family member X1; l 98.6 2.2E-09 7.5E-14 116.9 -2.0 155 84-239 70-252 (372)
145 4fdw_A Leucine rich hypothetic 98.6 9.3E-07 3.2E-11 97.1 17.9 231 86-362 113-356 (401)
146 4fdw_A Leucine rich hypothetic 98.5 3.1E-06 1E-10 92.9 17.6 185 87-293 158-355 (401)
147 3e4g_A ATP synthase subunit S, 98.3 3.7E-07 1.3E-11 85.6 3.9 40 877-917 115-154 (176)
148 4fs7_A Uncharacterized protein 98.2 5.6E-05 1.9E-09 83.2 20.3 129 98-234 59-193 (394)
149 3e4g_A ATP synthase subunit S, 98.2 9.6E-07 3.3E-11 82.8 4.6 88 796-891 62-154 (176)
150 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 94.8 4.9 178 86-273 107-319 (362)
151 2a5y_B CED-4; apoptosis; HET: 98.1 3.2E-07 1.1E-11 105.7 0.3 59 4-66 407-472 (549)
152 4fs7_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 85.1 14.0 309 123-506 61-375 (394)
153 1io0_A Tropomodulin; LRR prote 97.9 3.7E-06 1.3E-10 81.4 3.5 109 128-238 31-163 (185)
154 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.9E-10 85.8 5.4 150 84-239 137-320 (362)
155 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.2E-10 77.7 3.8 107 106-212 34-162 (185)
156 3rw6_A Nuclear RNA export fact 97.7 2.6E-05 8.8E-10 79.2 4.7 58 154-212 168-231 (267)
157 4gt6_A Cell surface protein; l 97.7 0.0033 1.1E-07 68.9 22.0 121 109-236 65-192 (394)
158 3rw6_A Nuclear RNA export fact 97.4 0.00016 5.4E-09 73.4 5.6 78 130-207 167-257 (267)
159 4gt6_A Cell surface protein; l 96.1 0.022 7.5E-07 62.3 11.2 106 151-271 260-367 (394)
160 4h09_A Hypothetical leucine ri 95.3 0.1 3.4E-06 56.6 12.4 129 125-269 209-341 (379)
161 4h09_A Hypothetical leucine ri 94.7 0.18 6.1E-06 54.6 12.1 125 106-236 215-343 (379)
162 3rfe_A Platelet glycoprotein I 94.4 0.052 1.8E-06 48.2 5.6 54 182-238 12-67 (130)
163 3rfe_A Platelet glycoprotein I 93.9 0.085 2.9E-06 46.8 6.1 35 134-168 32-67 (130)
164 1vt4_I APAF-1 related killer D 93.2 0.033 1.1E-06 66.3 2.7 46 3-59 392-437 (1221)
165 1pgv_A TMD-1, tropomodulin TMD 92.9 0.05 1.7E-06 51.9 3.0 62 150-211 64-136 (197)
166 1pgv_A TMD-1, tropomodulin TMD 92.3 0.1 3.4E-06 49.8 4.2 40 173-212 65-109 (197)
167 3sfz_A APAF-1, apoptotic pepti 90.9 0.098 3.3E-06 66.9 3.3 42 21-65 409-452 (1249)
168 1z6t_A APAF-1, apoptotic prote 76.0 1.3 4.3E-05 51.1 3.2 36 27-62 412-449 (591)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-42 Score=421.35 Aligned_cols=684 Identities=14% Similarity=0.050 Sum_probs=355.5
Q ss_pred CCccEEEcCCCcCCCC---cChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC--cc--ccCCCCCc
Q 002163 108 PQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IA--IIGNLKKL 180 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l~--~i~~L~~L 180 (958)
.+++.|+++++.+.+. +++. |.++++|++++++.+.+..+|+.|+++++||+|+|++|.+.. +. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChh-HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 3566666666655544 4433 567777777777777776677777777777777777777652 23 67777777
Q ss_pred cEEEccCCCCC-CCchhh-cCCCCCCEEeccCCCCCCccChhh---cCCCCCCCEEEeeCCcccccccccccCCCcCChh
Q 002163 181 EILSLVDSNIE-QLPEEM-AQLTQLRLFDLSGCSKLKVIPPNL---LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQ 255 (958)
Q Consensus 181 ~~L~l~~~~l~-~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 255 (958)
++|++++|.+. ..|..+ +++++|++|++++|. +...+... ++++++|++|++++|.+. ...
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~ 194 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS-------------GDV 194 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE-------------SCC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc-------------ccC
Confidence 77777777655 344443 677777777777776 55554433 567777777777777654 111
Q ss_pred hhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEcccc
Q 002163 256 ELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEV 335 (958)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~ 335 (958)
.++.+++|++|++++|.+....+.+ ..+++|++|+++++
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~l-----------------------------------------~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPFL-----------------------------------------GDCSALQHLDISGN 233 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCBC-----------------------------------------TTCCSCCEEECCSS
T ss_pred CcccCCcCCEEECcCCcCCCCCccc-----------------------------------------ccCCCCCEEECcCC
Confidence 2366777777777777654322211 11445666666553
Q ss_pred CCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhcccccccc-ceeccCCCchhccCccEEEE
Q 002163 336 PGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLE-KICLGQLRAESFYKLKIIKV 414 (958)
Q Consensus 336 ~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l 414 (958)
.-.......+ ..+++|++|++++|.....+ + ...+++|+.|++.++. +. .+. . .-...+++|++|++
T Consensus 234 ~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~------~-~~~l~~L~~L~L~~n~-l~~~ip-~-~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 234 KLSGDFSRAI--STCTELKLLNISSNQFVGPI------P-PLPLKSLQYLSLAENK-FTGEIP-D-FLSGACDTLTGLDL 301 (768)
T ss_dssp CCCSCHHHHT--TTCSSCCEEECCSSCCEESC------C-CCCCTTCCEEECCSSE-EEESCC-C-CSCTTCTTCSEEEC
T ss_pred cCCCcccHHH--hcCCCCCEEECCCCcccCcc------C-ccccCCCCEEECcCCc-cCCccC-H-HHHhhcCcCCEEEC
Confidence 3221222222 56667777777766532111 1 1256667777776643 22 111 0 11123588999999
Q ss_pred ecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccccccccchhh
Q 002163 415 RNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAA 494 (958)
Q Consensus 415 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 494 (958)
++|. ++...+ ..+..+++|++|++++|.-...++.. ....+++|++|+++++.-...++. .+.
T Consensus 302 s~n~-l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~-----------~l~~l~~L~~L~Ls~n~l~~~~p~----~l~ 364 (768)
T 3rgz_A 302 SGNH-FYGAVP-PFFGSCSLLESLALSSNNFSGELPMD-----------TLLKMRGLKVLDLSFNEFSGELPE----SLT 364 (768)
T ss_dssp CSSE-EEECCC-GGGGGCTTCCEEECCSSEEEEECCHH-----------HHTTCTTCCEEECCSSEEEECCCT----THH
T ss_pred cCCc-CCCccc-hHHhcCCCccEEECCCCcccCcCCHH-----------HHhcCCCCCEEeCcCCccCccccH----HHH
Confidence 8864 443322 34778888999998886533233310 124567788888887743323332 233
Q ss_pred ccc-ccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEecCCCcccc
Q 002163 495 SQT-RLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYL 573 (958)
Q Consensus 495 ~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 573 (958)
.++ +|+.|++++|..-.. .+.......+++|++|++++|.++...+..+. .+++|+.|++++| .++..
T Consensus 365 ~l~~~L~~L~Ls~N~l~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N-~l~~~ 433 (768)
T 3rgz_A 365 NLSASLLTLDLSSNNFSGP--------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFN-YLSGT 433 (768)
T ss_dssp HHTTTCSEEECCSSEEEEE--------CCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSS-EEESC
T ss_pred hhhcCCcEEEccCCCcCCC--------cChhhhhcccCCccEEECCCCccccccCHHHh--cCCCCCEEECcCC-cccCc
Confidence 444 666666666532100 00000001145566666666664433332232 2556666666654 34433
Q ss_pred cchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCCccceecCCCcccCCCcccEEEEecCCc
Q 002163 574 FPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDK 653 (958)
Q Consensus 574 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 653 (958)
.|. .+..+++|++|++++|.--..++.... .+++|+.|++.++.-...++... ..+++|+.|++++|.-
T Consensus 434 ~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 434 IPS-SLGSLSKLRDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRL 502 (768)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred ccH-HHhcCCCCCEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCcc
Confidence 232 245556666666666652222222111 34555555555543222222211 2345555555555532
Q ss_pred ceeeccccccccccccCccCCccccceeeeeeecCceeEEeeccchhhhhhhccCCccccccccEEEeeeCCCC-cccHH
Q 002163 654 VKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIG 732 (958)
Q Consensus 654 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~~-~~~~~ 732 (958)
...+|... ..+++|+.|++++|......+.. ...+++|+.|++++|... .+|..
T Consensus 503 ~~~~p~~~-----------------------~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 503 TGEIPKWI-----------------------GRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGG-----------------------GGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCcCChHH-----------------------hcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECCCCccCCcCChH
Confidence 22333111 23445555555555443222111 122344555555444433 33322
Q ss_pred HHhhcCCCcEEEEE-cceeeeeccch----------------hhhhhhhhccccceEEecCccCccccccCCCCCccccC
Q 002163 733 FLERFHNLEKLELR-WSSYKEIFSNE----------------EIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITE 795 (958)
Q Consensus 733 ~l~~l~~L~~L~i~-c~~l~~~~~~~----------------~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~ 795 (958)
.+. +..+..+.+. +..+..+.... .....+..++.++.+.+.. ..+.+.....+..++
T Consensus 558 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 558 MFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS----RVYGGHTSPTFDNNG 632 (768)
T ss_dssp GGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS----CEEEEECCCSCSSSB
T ss_pred Hhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc----ceecccCchhhhccc
Confidence 221 1111111111 11110000000 0000011111111111111 011111122356678
Q ss_pred CccEEEEeccCCcccccCCccccCcccEEEEccCcCCccccchHhhhcCCCccEEEEcccchhHHHhccCcccccccccc
Q 002163 796 NLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVF 875 (958)
Q Consensus 796 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 875 (958)
+|+.|+++++.--..+|..++.+++|+.|+++++.--..+| .....+++|+.|+++++.--..++.. ...+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~-------l~~l 703 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQA-------MSAL 703 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGG-------GGGC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCChH-------HhCC
Confidence 89999999987667888888999999999999864333554 34678899999999988542233221 2257
Q ss_pred cccceeccccCcccccccCCCccccCCCccEEEeccCCCCcccCcCccCCCccceEEeccCCccccccCchHHH
Q 002163 876 SKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLYKGCWEGDLNTT 949 (958)
Q Consensus 876 ~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~p~L~~~~~~~~g~~~~~i~~i~~~ 949 (958)
++|+.|++++++--..+|.++ .+.++....+.++|.+--.| |. .|...++++|++|+|++..
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~--------l~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGLCGYP--------LP-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEEESTT--------SC-CCCSCC-------------
T ss_pred CCCCEEECcCCcccccCCCch---hhccCCHHHhcCCchhcCCC--------Cc-CCCCCccCCCCCCCCcccc
Confidence 889999999987656677765 45666666677888765433 33 6888999999999998864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-39 Score=392.21 Aligned_cols=655 Identities=15% Similarity=0.028 Sum_probs=441.0
Q ss_pred CCCcCEEEeecCCCee----cCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc-cCCc--ccCCCC
Q 002163 85 LKNCPTIFLHDCKHWE----VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPS--LFHLPL 156 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~l~ 156 (958)
..+++.|+++++.+.. ++..+ .++.|+.++++.+.+. .++. .|.++++|++|+|++|.+. .+|. .+++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 3578899998877653 55444 7888999998887654 3343 3689999999999999987 5777 899999
Q ss_pred CCCEEEccCCCCCC--ccc-cCCCCCccEEEccCCCCCCC-chh---hcCCCCCCEEeccCCCCCCccChhhcCCCCCCC
Q 002163 157 NLQTLCLDRCALGD--IAI-IGNLKKLEILSLVDSNIEQL-PEE---MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (958)
Q Consensus 157 ~Lr~L~L~~~~l~~--l~~-i~~L~~L~~L~l~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (958)
+||+|++++|.+.. +.. ++++++|++|++++|.+... |.. ++++++|++|++++|. +..... ++++++|+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~ 203 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLE 203 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCC
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCC
Confidence 99999999998763 233 48999999999999998855 444 7899999999999997 555443 58899999
Q ss_pred EEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEE
Q 002163 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLK 309 (958)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~ 309 (958)
+|++++|.+. ...+ .++++++|++|++++|.+..
T Consensus 204 ~L~Ls~n~l~-----------~~~~-~l~~l~~L~~L~Ls~n~l~~---------------------------------- 237 (768)
T 3rgz_A 204 FLDVSSNNFS-----------TGIP-FLGDCSALQHLDISGNKLSG---------------------------------- 237 (768)
T ss_dssp EEECCSSCCC-----------SCCC-BCTTCCSCCEEECCSSCCCS----------------------------------
T ss_pred EEECcCCcCC-----------CCCc-ccccCCCCCEEECcCCcCCC----------------------------------
Confidence 9999999875 2223 38999999999999887531
Q ss_pred ecccccChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccc-cccccchhhcc
Q 002163 310 LKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYN-AFLLLESLVLH 388 (958)
Q Consensus 310 l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~-~~~~L~~L~l~ 388 (958)
.++..+..+++|++|+++++. .....+. ..+++|++|+++++.-...++ .... .+++|+.|+++
T Consensus 238 ------~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~---~~l~~L~~L~L~~n~l~~~ip-----~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 238 ------DFSRAISTCTELKLLNISSNQ-FVGPIPP---LPLKSLQYLSLAENKFTGEIP-----DFLSGACDTLTGLDLS 302 (768)
T ss_dssp ------CHHHHTTTCSSCCEEECCSSC-CEESCCC---CCCTTCCEEECCSSEEEESCC-----CCSCTTCTTCSEEECC
T ss_pred ------cccHHHhcCCCCCEEECCCCc-ccCccCc---cccCCCCEEECcCCccCCccC-----HHHHhhcCcCCEEECc
Confidence 222233446677777777743 2322333 267778888887775221111 1122 24778888887
Q ss_pred ccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceec
Q 002163 389 NLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEF 468 (958)
Q Consensus 389 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 468 (958)
++. +.... ....+.+++|++|++.+|.-...+|. ..+..+++|++|++++|.-...++. ....+
T Consensus 303 ~n~-l~~~~--p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l 366 (768)
T 3rgz_A 303 GNH-FYGAV--PPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNL 366 (768)
T ss_dssp SSE-EEECC--CGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHH
T ss_pred CCc-CCCcc--chHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccH------------HHHhh
Confidence 743 22211 12234678888888888643224432 3467888888888888653323331 22344
Q ss_pred c-ccceEecCCCcccccccccccchhhc--ccccceecccCCCceeecccccCCccccccccccccccceeecccccccc
Q 002163 469 S-QLHSLTLKFLPQLTSFYSQVKTSAAS--QTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEK 545 (958)
Q Consensus 469 ~-~L~~L~l~~c~~l~~~~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 545 (958)
+ +|++|+++++.--..++.. ... +++|++|++++|..... .......+++|+.|++++|.++.
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~----~~~~~~~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPN----LCQNPKNTLQELYLQNNGFTGK----------IPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTT----TTCSTTCCCCEEECCSSEEEEE----------CCGGGGGCTTCCEEECCSSEEES
T ss_pred hcCCcEEEccCCCcCCCcChh----hhhcccCCccEEECCCCccccc----------cCHHHhcCCCCCEEECcCCcccC
Confidence 4 8888888887543333221 222 67789999988853311 11233468999999999999776
Q ss_pred cccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccC
Q 002163 546 IWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNL 625 (958)
Q Consensus 546 ~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 625 (958)
..+..+. .+++|+.|++++| .++...|. .+..+++|++|++++|.-...++.... .+++|+.|++.++
T Consensus 433 ~~p~~l~--~l~~L~~L~L~~n-~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~--------~l~~L~~L~L~~N 500 (768)
T 3rgz_A 433 TIPSSLG--SLSKLRDLKLWLN-MLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLS--------NCTNLNWISLSNN 500 (768)
T ss_dssp CCCGGGG--GCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSS
T ss_pred cccHHHh--cCCCCCEEECCCC-cccCcCCH-HHcCCCCceEEEecCCcccCcCCHHHh--------cCCCCCEEEccCC
Confidence 5544443 4899999999996 46544354 477899999999999983334443221 6789999999998
Q ss_pred CccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeEEeeccchhhhhhh
Q 002163 626 SELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQ 705 (958)
Q Consensus 626 ~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 705 (958)
.-...++... ..+++|+.|++++|.-...+|... ..+++|+.|++++|......+
T Consensus 501 ~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l-----------------------~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 501 RLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAEL-----------------------GDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGG-----------------------GGCTTCCEEECCSSEEESBCC
T ss_pred ccCCcCChHH--hcCCCCCEEECCCCcccCcCCHHH-----------------------cCCCCCCEEECCCCccCCcCC
Confidence 7544555433 358999999999986555666332 568999999999998764332
Q ss_pred ccCCccccccc---------cEEEeeeCCCC-------------cccHHHHhhcCCCcEEEEEcceeeeeccchhhhhhh
Q 002163 706 SQFPKHIFRNL---------KNLEVVNDESE-------------NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHA 763 (958)
Q Consensus 706 ~~~~~~~~~~L---------~~L~i~~c~~~-------------~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~ 763 (958)
..+.. ...+ +...+.+.... ......+..++.+..+++..+.+....+. .+
T Consensus 556 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-----~~ 628 (768)
T 3rgz_A 556 AAMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-----TF 628 (768)
T ss_dssp GGGGT--TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC-----SC
T ss_pred hHHhc--ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch-----hh
Confidence 21110 1111 11122111100 11112233444444444444455544443 45
Q ss_pred hhccccceEEecCccCccccccCCCCCccccCCccEEEEeccCCcccccCCccccCcccEEEEccCcCCccccchHhhhc
Q 002163 764 EMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKS 843 (958)
Q Consensus 764 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~ 843 (958)
..+++|+.|+++++.--..+|. .++.+++|+.|+++++.--..+|..++.+++|+.|+++++.--..+| ..+..
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip--~~l~~ 702 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP--QAMSA 702 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC--GGGGG
T ss_pred hccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC--hHHhC
Confidence 6688999999998754444543 37889999999999998777899999999999999999964333554 34678
Q ss_pred CCCccEEEEcccchhHHHhccCcccccccccccccceeccccCccccccc
Q 002163 844 LVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFC 893 (958)
Q Consensus 844 l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 893 (958)
+++|++|++++++---.++. .. .+..+....+.++|.|...|
T Consensus 703 l~~L~~L~ls~N~l~g~iP~-~~-------~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPE-MG-------QFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCCCSEEECCSSEEEEECCS-SS-------SGGGSCGGGGCSCTEEESTT
T ss_pred CCCCCEEECcCCcccccCCC-ch-------hhccCCHHHhcCCchhcCCC
Confidence 89999999999864333332 22 46677778888888776543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-37 Score=369.79 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=139.1
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
+.++.+++.+.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+++++||+|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 456677777777887664 78999999988877 56767788999999999999988866 5678899999999999999
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
++.+ ..++++++|++|++++|.+..+| ..++++++|++|++++|. +..++.+.++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc-----
Confidence 8865 35889999999999999888886 578999999999999987 66665555788999999999888765
Q ss_pred cccCCCcCChhhhc--CCCCCCEEEeeccCCccCCC
Q 002163 245 LNVGRSNASLQELK--LLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 245 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~ 278 (958)
...+..++ .+++|+.|++++|.+..++.
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------ccCHHHhhccccccccEEECCCCcccccCh
Confidence 22334443 45788888888887655443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-35 Score=355.20 Aligned_cols=553 Identities=16% Similarity=0.155 Sum_probs=334.5
Q ss_pred CcccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-
Q 002163 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS- 150 (958)
Q Consensus 74 ~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~- 150 (958)
.+...++ ...+.++++|++++|.+..++.. + .+++|++|++++|.+. .+++..|.++++|++|++++|.+..+|.
T Consensus 14 ~~L~~ip-~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 14 LKLTQVP-DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SCCSSCC-SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCccccc-cccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChh
Confidence 3444444 34568999999999999888764 3 7899999999999887 4555678999999999999999999987
Q ss_pred ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcC--CC
Q 002163 151 LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS--GL 225 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~--~L 225 (958)
+|+++++|++|++++|.+..+ ..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++ ++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccc
Confidence 699999999999999998865 5799999999999999998865 5678999999999999998 8888765444 56
Q ss_pred CCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCc
Q 002163 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNK 305 (958)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l 305 (958)
++|++|++++|.+. ...+..++.+.+|+.|.+..+.......
T Consensus 171 ~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~--------------------------- 212 (680)
T 1ziw_A 171 SSLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLT--------------------------- 212 (680)
T ss_dssp CEESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHH---------------------------
T ss_pred ccccEEECCCCccc-----------ccChhhhhhhhhhhhhhccccccChhhH---------------------------
Confidence 89999999998775 3446678888889988887654320000
Q ss_pred eEEEecccccChHHHHHhhccccEEEccccCCcccccccccccccc--ccceEeeccCCCeeEEecCCcccccccccccc
Q 002163 306 RVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFL--QLKHLHVQNNPFILFIVDSMAWVRYNAFLLLE 383 (958)
Q Consensus 306 ~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~--~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~ 383 (958)
..+.. ....++|+.|+++++.........+ ..++ +|++|+++++. +..++. ..+..+++|+
T Consensus 213 ---------~~~~~-~l~~~~L~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~ 275 (680)
T 1ziw_A 213 ---------EKLCL-ELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNN-LNVVGN----DSFAWLPQLE 275 (680)
T ss_dssp ---------HHHHH-HHTTSCCCEEECTTSCCCEECTTTT--GGGGGSCCCEEECTTSC-CCEECT----TTTTTCTTCC
T ss_pred ---------HHHHH-HhhhccccEEEccCCcccccChhHh--hccCcCCCCEEECCCCC-cCccCc----ccccCccccc
Confidence 00000 0113567777777643222212222 3343 37777777764 222110 1233445555
Q ss_pred hhhccccccccceeccCCCchhccCccEEEEecCCCcc-----cccc--hhhhhccCCceEEEeeccccccccccccccC
Q 002163 384 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-----NIFS--FSFVRGLPQLQTLNVINCKNMKEIFTVGREN 456 (958)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~--~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 456 (958)
.|+++++ .+..+.. .....+++|+.|++.++..-. .+|. ...+..+++|++|+++++. +..+.
T Consensus 276 ~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~------ 345 (680)
T 1ziw_A 276 YFFLEYN-NIQHLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK------ 345 (680)
T ss_dssp EEECCSC-CBSEECT--TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC------
T ss_pred EeeCCCC-ccCccCh--hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC------
Confidence 5555552 2222211 112234555555554421110 0110 0013344444444444432 11111
Q ss_pred CccCCccCceeccccceEecCCCcccccccccccchhhcccccceecccCCCc-e-eecccccCCccccccccccccccc
Q 002163 457 DVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPR-E-VILEDECDTLMPFFNEKVVFPNLE 534 (958)
Q Consensus 457 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~-l-~~~~~~~~~~~~~~~~~~~~~~L~ 534 (958)
. ..+..+++|++|++++|.. + .++.. .+ .....++|+
T Consensus 346 ------------------------------~---~~~~~l~~L~~L~Ls~n~~~~~~l~~~-------~f-~~~~~~~L~ 384 (680)
T 1ziw_A 346 ------------------------------S---NMFTGLINLKYLSLSNSFTSLRTLTNE-------TF-VSLAHSPLH 384 (680)
T ss_dssp ------------------------------T---TTTTTCTTCCEEECTTCBSCCCEECTT-------TT-GGGTTSCCC
T ss_pred ------------------------------h---hHhccccCCcEEECCCCchhhhhcchh-------hh-cccccCcCc
Confidence 1 1133444555555554421 0 00000 00 001235788
Q ss_pred eeecccccccccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeec
Q 002163 535 TLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVF 614 (958)
Q Consensus 535 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~ 614 (958)
.|++++|.+..+....+. .+++|+.|+++++ .++...+...+..+++|++|++++|. +..+...... .+
T Consensus 385 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~~ 453 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAFS--WLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFA-------LV 453 (680)
T ss_dssp EEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTT-------TC
T ss_pred eEECCCCCCCeEChhhhh--CCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeChhhhh-------cC
Confidence 888888887766555554 3788888888885 44432244557778888888888887 5444332111 46
Q ss_pred CcccccccccCCc--cceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeE
Q 002163 615 PKVTFLKLWNLSE--LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEE 692 (958)
Q Consensus 615 ~~L~~L~l~~c~~--L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 692 (958)
++|+.|++.++.- +..++... ..+++|+.|++++| +++.++... ...+++|++
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N-~l~~i~~~~----------------------~~~l~~L~~ 508 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN-NIANINDDM----------------------LEGLEKLEI 508 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS-CCCCCCTTT----------------------TTTCTTCCE
T ss_pred cccccchhccccccccccCCccc--ccCCCCCEEECCCC-CCCcCChhh----------------------hccccccCE
Confidence 7888888877542 22223222 35788888888875 455444211 034677888
Q ss_pred EeeccchhhhhhhccCC------ccccccccEEEeeeCCCCcccHHHHhhcCCCcEEEEEcceeeeeccchhhhhhhhhc
Q 002163 693 LKLSGKDIAMICQSQFP------KHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 766 (958)
Q Consensus 693 L~l~~~~~~~~~~~~~~------~~~~~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l 766 (958)
|++++|.....+...++ ...+++|+.|++++|....+|...+.++++|+.|+++++.++.+++. .+..+
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~~l 583 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS-----VFNNQ 583 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTC
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh-----HhCCC
Confidence 88888776655433322 23345666666666654455555556666666666665555554332 23344
Q ss_pred cccceEEecC
Q 002163 767 TQVKSLKLWE 776 (958)
Q Consensus 767 ~~L~~L~l~~ 776 (958)
++|+.|++++
T Consensus 584 ~~L~~L~L~~ 593 (680)
T 1ziw_A 584 VSLKSLNLQK 593 (680)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEECCC
Confidence 5555555555
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-34 Score=344.68 Aligned_cols=192 Identities=18% Similarity=0.200 Sum_probs=148.2
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (958)
-++++.+++.++.+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++||+|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3567777788888887665 78999999999887 56666689999999999999999877 567899999999999999
Q ss_pred CCCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCC--ccChhhcCCCCCCCEEEeeCCccccc
Q 002163 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK--VIPPNLLSGLSRLEDLYMGNTSVKWE 241 (958)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (958)
.++.+ ..++++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 98754 77999999999999999998876 679999999999999997 65 46766 89999999999999877611
Q ss_pred ccccccCCCcCChhhhcCCCC-CCEEEeeccCCccCCCcc-ccccccEEEEE
Q 002163 242 FEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL-FSKKLERYKIF 291 (958)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~ 291 (958)
.......+.+++. ++.|+++++.+..++... ...+|+.+++.
T Consensus 169 --------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 169 --------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp --------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred --------ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 1122334444443 558999988877776654 22244444443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-34 Score=338.09 Aligned_cols=178 Identities=20% Similarity=0.175 Sum_probs=143.5
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
++++..+..+.++|..+. +.+++|++++|.+. .+++..|.++++|++|++++|.+..+ |.+|+++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 456666667777887664 47899999999887 56566689999999999999998866 6789999999999999999
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
+..+ ..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-----
Confidence 8753 6789999999999999999987 5678999999999999998 77663222566999999999998776
Q ss_pred cccCCCcCChhhhcCCCCCC--EEEeeccCCccCCCcc
Q 002163 245 LNVGRSNASLQELKLLSHLT--TLEIQICDAMILPKGL 280 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~ 280 (958)
...+..++.+++|+ .|++++|.+..+++..
T Consensus 167 ------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 167 ------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp ------EECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ------ccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 34567788888888 8888888876655543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-33 Score=333.52 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=154.0
Q ss_pred cCcccCCCccccCCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-C
Q 002163 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-P 149 (958)
Q Consensus 73 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p 149 (958)
+.....++. ..++++++|++++|.+..++. .+ .+++|++|++++|.+. .+++..|.++++||+|++++|.+..+ |
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 20 DQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccCh
Confidence 334444443 567899999999999998876 33 8999999999999887 56667789999999999999999987 7
Q ss_pred cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCCCccChhhcCCC
Q 002163 150 SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (958)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (958)
..|+++++|++|++++|.+..+ ..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 176 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFL 176 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhh
Confidence 8999999999999999998864 67999999999999999988 579999999999999999998 888876556666
Q ss_pred CCCC----EEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 226 SRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 226 ~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
.+|+ +|++++|.+. ......+.. .+|+.|+++++..
T Consensus 177 ~~L~~~l~~L~l~~n~l~-----------~~~~~~~~~-~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPID-----------FIQDQAFQG-IKLHELTLRGNFN 216 (606)
T ss_dssp HHCTTCCCEEECTTCCCC-----------EECTTTTTT-CEEEEEEEESCCS
T ss_pred hccccccceeeccCCCcc-----------eeCcccccC-ceeeeeeccCCcc
Confidence 6655 8999998875 112223333 4899999999875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-33 Score=332.58 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=122.7
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 187 (958)
++++..+.... .+|..+ -+.+++|++++|.++.+ |.+|+++++||+|++++|.+..+ ..|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 46677666655 677654 23689999999999987 66899999999999999998854 7799999999999999
Q ss_pred CCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEE
Q 002163 188 SNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (958)
Q Consensus 188 ~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (958)
|.+..+ |..++++++|++|++++|. +..++...++++++|++|++++|.+. ......+..+++|+.|
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKVL 158 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCEE
T ss_pred CcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCEE
Confidence 999866 6789999999999999998 88875555899999999999999876 2223445558999999
Q ss_pred EeeccCCccC
Q 002163 267 EIQICDAMIL 276 (958)
Q Consensus 267 ~l~~~~~~~~ 276 (958)
++++|.+..+
T Consensus 159 ~L~~n~l~~~ 168 (606)
T 3t6q_A 159 DFQNNAIHYL 168 (606)
T ss_dssp ECCSSCCCEE
T ss_pred EcccCccccc
Confidence 9998876543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=4.2e-31 Score=323.97 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=108.0
Q ss_pred EEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCcc-CccC-CcccCCCCCCCEEEccCCC
Q 002163 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
..+.+++.++.+|. -.+++++|++++|.+. .+....|.++++|++|++++|. +..+ |.+|+++++||+|+|++|.
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 34444555666665 3466777777777665 3444446777777777777773 3355 5667777777777777777
Q ss_pred CCC--ccccCCCCCccEEEccCCCCCC-Cchh--hcCCCCCCEEeccCCCCCCccC-hhhcCCCCCCCEEEeeCCccccc
Q 002163 168 LGD--IAIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVIP-PNLLSGLSRLEDLYMGNTSVKWE 241 (958)
Q Consensus 168 l~~--l~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~~~ 241 (958)
+.. +..++++++|++|++++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~-- 161 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF-- 161 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC--
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC--
Confidence 664 3667777777777777777664 4444 7777777777777776 54442 223677777777777777654
Q ss_pred ccccccCCCcCChhhhcCC--CCCCEEEeeccCC
Q 002163 242 FEGLNVGRSNASLQELKLL--SHLTTLEIQICDA 273 (958)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~ 273 (958)
...+..++.+ ++|+.|+++.|.+
T Consensus 162 ---------~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 162 ---------LVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp ---------CCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred ---------eeCHHHcccccCCccceEECCCCcc
Confidence 2233444444 5677777776654
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=9.5e-31 Score=308.59 Aligned_cols=139 Identities=19% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cc
Q 002163 97 KHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AI 173 (958)
Q Consensus 97 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~ 173 (958)
.+.++|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..++ ..|+++++||+|++++|.++.+ ..
T Consensus 18 ~l~~ip~~l~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSSSC-SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCcc-ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 3344443332 34555555555544 333334455555555555555555443 3455555555555555555432 34
Q ss_pred cCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCccc
Q 002163 174 IGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 174 i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
++++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 5555555555555555555543 35555555555555554 433 3444 555555555555555443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3.4e-30 Score=315.92 Aligned_cols=524 Identities=17% Similarity=0.162 Sum_probs=303.0
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL- 148 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l- 148 (958)
.+.....++. .+.++++|++++|.+..+.. .+ .+++|++|++++|.....+++..|.++++|++|+|++|.+..+
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3344455554 77899999999999988754 34 8999999999999777678777789999999999999999976
Q ss_pred CcccCCCCCCCEEEccCCCCCC--ccc--cCCCCCccEEEccCCCCCCC--chhhcCCCCCCEEeccCCCCCCccChhhc
Q 002163 149 PSLFHLPLNLQTLCLDRCALGD--IAI--IGNLKKLEILSLVDSNIEQL--PEEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (958)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~~i 222 (958)
|..|+++++|++|++++|.+.. +.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +..+..+.+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHc
Confidence 8899999999999999999875 443 99999999999999999876 3579999999999999998 665544447
Q ss_pred CCC--CCCCEEEeeCCcccccccccccCCCcCChhhhcCCC------CCCEEEeeccCCc-cCCCcc----ccccccEEE
Q 002163 223 SGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS------HLTTLEIQICDAM-ILPKGL----FSKKLERYK 289 (958)
Q Consensus 223 ~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~~~~L~~l~ 289 (958)
+.+ ++|+.|++++|.+.. ..+..++.+. .|+.|++++|... ..+..+ ....+..+.
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred ccccCCccceEECCCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 777 899999999998761 2222333333 4999999988653 222222 122333333
Q ss_pred EEecCccccccccCCceEEEecccccChHH-HHH--hhccccEEEccccCCccccccccccccccccceEeeccCCCeeE
Q 002163 290 IFIGDEWDWSGNYKNKRVLKLKLYTSNVDE-VIM--QLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILF 366 (958)
Q Consensus 290 l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~-~~~--~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~ 366 (958)
+.......... ...+ ..... .+. ..++|+.|+++++. +....+. .+..+++|++|+++++.
T Consensus 238 l~~~~~~~~~~-~~~l---------~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~---- 301 (844)
T 3j0a_A 238 LAHHIMGAGFG-FHNI---------KDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSR-VFETLKDLKVLNLAYNK---- 301 (844)
T ss_dssp CCSSCCBCSSS-CSSS---------TTGGGTTTTTTTTSCCCEEECTTCC-CCEECSC-CSSSCCCCCEEEEESCC----
T ss_pred ccccccccccc-cccc---------CCCChhhhhccccCCccEEECCCCc-ccccChh-hhhcCCCCCEEECCCCc----
Confidence 22100000000 0000 00000 000 01344444444422 1111111 12344444444444443
Q ss_pred EecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccc
Q 002163 367 IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (958)
Q Consensus 367 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (958)
+..+... ....+++|+.|+++++ .++.+++ ..+..+++|+.|+++++ .+
T Consensus 302 --------------------------i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i 350 (844)
T 3j0a_A 302 --------------------------INKIADE--AFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HI 350 (844)
T ss_dssp --------------------------CCEECTT--TTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CC
T ss_pred --------------------------CCCCChH--HhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CC
Confidence 2222111 1123445555555553 2333322 22444555555555543 22
Q ss_pred cccccccccCCccCCccCceeccccceEecCCCcccccccccccchhhcccccceecccCCCceeecccccCCccccccc
Q 002163 447 KEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNE 526 (958)
Q Consensus 447 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 526 (958)
..+++ .....+++|++|+++++. ++.+ ..+++|+.|.++++.--.++
T Consensus 351 ~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~i--------~~~~~L~~L~l~~N~l~~l~------------- 397 (844)
T 3j0a_A 351 AIIQD-----------QTFKFLEKLQTLDLRDNA-LTTI--------HFIPSIPDIFLSGNKLVTLP------------- 397 (844)
T ss_dssp CCCCS-----------SCSCSCCCCCEEEEETCC-SCCC--------SSCCSCSEEEEESCCCCCCC-------------
T ss_pred CccCh-----------hhhcCCCCCCEEECCCCC-CCcc--------cCCCCcchhccCCCCccccc-------------
Confidence 22221 012334555555555432 1211 11344555555554311111
Q ss_pred cccccccceeecccccccccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccc
Q 002163 527 KVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 606 (958)
Q Consensus 527 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 606 (958)
....+++.|++++|.++.+..... ...+++|+.|+++++ +++...+......+++|++|++++|. ++.++.....
T Consensus 398 -~~~~~l~~L~ls~N~l~~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~- 472 (844)
T 3j0a_A 398 -KINLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELC- 472 (844)
T ss_dssp -CCCTTCCEEECCSCCCCSSTTHHH-HTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCC-
T ss_pred -ccccccceeecccCccccCchhhh-hhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-cccccccccc-
Confidence 013466777777777554321110 013677888888774 56554333334556778888888776 5433221100
Q ss_pred cccceeecCcccccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeee
Q 002163 607 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 686 (958)
Q Consensus 607 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (958)
......+++|+.|+++++ .++.++.... ..+++|+.|+++++ +++.+|.. ..
T Consensus 473 -~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~------------------------~~ 524 (844)
T 3j0a_A 473 -WDVFEGLSHLQVLYLNHN-YLNSLPPGVF-SHLTALRGLSLNSN-RLTVLSHN------------------------DL 524 (844)
T ss_dssp -SSCSSCBCCEECCCCCHH-HHTTCCTTSS-SSCCSCSEEEEESC-CCSSCCCC------------------------CC
T ss_pred -hhhhcCcccccEEECCCC-cccccChhHc-cchhhhheeECCCC-CCCccChh------------------------hh
Confidence 000114577888888776 5666554433 25788888888875 56655522 11
Q ss_pred cCceeEEeeccchhhhhhhccCCccccccccEEEeeeCCCC
Q 002163 687 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE 727 (958)
Q Consensus 687 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~~ 727 (958)
.++|+.|++++|...... ...+++|+.|++++|+..
T Consensus 525 ~~~L~~L~Ls~N~l~~~~-----~~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 525 PANLEILDISRNQLLAPN-----PDVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CSCCCEEEEEEECCCCCC-----SCCCSSCCEEEEEEECCC
T ss_pred hccccEEECCCCcCCCCC-----hhHhCCcCEEEecCCCcc
Confidence 267888888887765432 234557778888776643
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.2e-30 Score=303.75 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=122.7
Q ss_pred EEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCC
Q 002163 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALG 169 (958)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~ 169 (958)
.+..++.++++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++ .+|+++++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3445566667776553 67888888888766 444455678888888888888887664 57788888888888888877
Q ss_pred Cc--cccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccc
Q 002163 170 DI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 170 ~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
.+ ..++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------ 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------ 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc------
Confidence 54 347888888888888887774 35677888888888888876567777555778888888888877665
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
...+..++.+++|+.|+++++..
T Consensus 162 -----~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 162 -----NYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSBS
T ss_pred -----ccChhhhhccccCceEecccCcc
Confidence 23456677777777777776654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=306.57 Aligned_cols=183 Identities=22% Similarity=0.236 Sum_probs=151.3
Q ss_pred cccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cc
Q 002163 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SL 151 (958)
Q Consensus 75 ~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~ 151 (958)
....++. ..+..+++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++||+|++++|.+..+| ..
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 3344442 4567899999999999888753 3 8999999999999877 677777899999999999999999876 68
Q ss_pred cCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCC
Q 002163 152 FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (958)
|+++++||+|++++|.++.+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++++++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhc
Confidence 99999999999999999876 359999999999999999885 79999999999999999998 88887665788888
Q ss_pred C----CEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccC
Q 002163 228 L----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 228 L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
| ++|++++|.+. ...+..+... +|+.|+++++.
T Consensus 175 L~~~~~~L~l~~n~l~-----------~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMN-----------FIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CTTCCCEEECTTCCCC-----------EECTTTTTTC-EEEEEEEESCC
T ss_pred cchhhhhcccCCCCce-----------ecCHHHhccC-cceeEeccccc
Confidence 8 88999888765 1223344444 68888887653
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.4e-29 Score=296.77 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=154.4
Q ss_pred cccCCCccccCCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcc-
Q 002163 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL- 151 (958)
Q Consensus 75 ~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~- 151 (958)
.....+. ...+++++|++++|.+..++. .+ .+++|++|++++|.+. .+++..|.++++|++|++++|.+..+|..
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHH
Confidence 3333333 456799999999999988754 34 7999999999999987 56666789999999999999999988764
Q ss_pred cCCCCCCCEEEccCCCCCC---ccccCCCCCccEEEccCCC-CCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCC
Q 002163 152 FHLPLNLQTLCLDRCALGD---IAIIGNLKKLEILSLVDSN-IEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~---l~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~ 226 (958)
|+++++|++|++++|.++. +..++++++|++|++++|. +..+| ..++++++|++|++++|. +.......+++++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~ 172 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIR 172 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCS
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccc
Confidence 9999999999999999874 3679999999999999997 77787 579999999999999998 6664334489999
Q ss_pred CCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccC
Q 002163 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (958)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (958)
+|++|+++++... ......++.+++|+.|++++|.+...
T Consensus 173 ~L~~L~l~~n~~~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 173 DIHHLTLHLSESA-----------FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEEEEECSBST-----------THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cCceEecccCccc-----------ccchhhHhhcccccEEEccCCccccc
Confidence 9999999988754 11122346789999999999987654
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.1e-27 Score=284.21 Aligned_cols=173 Identities=17% Similarity=0.285 Sum_probs=132.1
Q ss_pred CCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--c
Q 002163 96 CKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--A 172 (958)
Q Consensus 96 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~ 172 (958)
.+++++|..++ +.+++|++++|.+. .+++..|.++++|++|+|++|.|+.+|+ +|.++++|++|+|++|+++.+ .
T Consensus 41 ~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 41 LNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 35567777664 57899999999887 6777778999999999999999998865 689999999999999998865 5
Q ss_pred ccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCcc--ChhhcCCCCCCCEEEeeCCcccccccccccCC
Q 002163 173 IIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (958)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (958)
.|+++++|++|++++|+++.+|. .|+++++|++|++++|. +..+ |.. ++++++|++|++++|.+...
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~-------- 188 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI-------- 188 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE--------
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccc--------
Confidence 68899999999999999998875 48999999999999987 6543 444 78899999999998877511
Q ss_pred CcCChhhhcCCCC-CCEEEeeccCCccCCCcc
Q 002163 250 SNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (958)
Q Consensus 250 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~ 280 (958)
.......+.++.. ...++++.+.+..++...
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 0112333444432 346777777766665544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=284.15 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=101.9
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
+++++++|.++.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 567777777777776655 77888888877776 45555577788888888888877766 5677777888888888877
Q ss_pred CCCccccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCC--CEEEeeCCcc
Q 002163 168 LGDIAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (958)
Q Consensus 168 l~~l~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 238 (958)
++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 7765433 77777777777777764 45677777777777777776 5442 25566666 7777777655
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.3e-27 Score=284.46 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=83.0
Q ss_pred ccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccc
Q 002163 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (958)
Q Consensus 406 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 485 (958)
.++|+.|++++| .++.+|. ..+..+++|+.|+++++ .+..++..... ........+++|+.|+++++ +++.+
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~----~~~~~l~nl~~L~~L~Ls~N-~L~~l 743 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLK----PKDGNYKNTYLLTTIDLRFN-KLTSL 743 (876)
T ss_dssp CCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSS----CTTSCCTTGGGCCEEECCSS-CCCCC
T ss_pred CCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhc----cccccccccCCccEEECCCC-CCccc
Confidence 357888888874 4556653 34557788888888875 34444411000 00000112235555555554 23322
Q ss_pred cccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEe
Q 002163 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (958)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (958)
+.. +. ...+++|+.|++++|.++.+.. .+ ..+++|+.|+++
T Consensus 744 p~~----l~--------------------------------~~~l~~L~~L~Ls~N~L~~lp~-~l--~~L~~L~~L~Ls 784 (876)
T 4ecn_A 744 SDD----FR--------------------------------ATTLPYLSNMDVSYNCFSSFPT-QP--LNSSQLKAFGIR 784 (876)
T ss_dssp CGG----GS--------------------------------TTTCTTCCEEECCSSCCSSCCC-GG--GGCTTCCEEECC
T ss_pred hHH----hh--------------------------------hccCCCcCEEEeCCCCCCccch-hh--hcCCCCCEEECC
Confidence 220 11 0135566666666666554322 11 135666666665
Q ss_pred cC-----CCcccccchhhhhhcccCCEEEEeccccccceecccccccccceeecCcccccccccCC
Q 002163 566 GC-----EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 626 (958)
Q Consensus 566 ~C-----~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~ 626 (958)
++ +++....|. .+.++++|++|++++|. +..+|.. .+++|+.|+|++++
T Consensus 785 ~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~-L~~Ip~~----------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPT-GITTCPSLIQLQIGSND-IRKVDEK----------LTPQLYILDIADNP 838 (876)
T ss_dssp CCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSC-CCBCCSC----------CCSSSCEEECCSCT
T ss_pred CCCCcccccccccChH-HHhcCCCCCEEECCCCC-CCccCHh----------hcCCCCEEECCCCC
Confidence 42 233333242 25566777777777766 4555543 33567777777665
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=269.21 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=74.5
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 187 (958)
++|++++|.+. .+|..++ ++|++|++++|.+..++ ..|.++++||+|++++|.++.+ ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 45666666665 5665442 56666666666666554 4566666666666666666643 4566666666666666
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCccc
Q 002163 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 188 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
|.++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc
Confidence 666666654 56666666666665 443 3333 566666666666665543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.3e-26 Score=273.86 Aligned_cols=506 Identities=17% Similarity=0.130 Sum_probs=300.6
Q ss_pred cccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-c
Q 002163 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-L 151 (958)
Q Consensus 75 ~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~ 151 (958)
+...+| .+++..+++|++++|.++.+++. + .+++|++|++++|.+. .+++..|.++++|++|+|++|.++.+|. .
T Consensus 42 ~l~~vP-~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSCC-SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CcCccC-CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 344444 35678999999999999999864 3 8999999999999987 6888889999999999999999999985 6
Q ss_pred cCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCC
Q 002163 152 FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (958)
|.++++|++|++++|.++.+ ..|+++++|++|++++|.++. +|..++++++|++|++++|. +..++.+.+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 198 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhh
Confidence 89999999999999999876 469999999999999999874 57889999999999999998 88887655655554
Q ss_pred CC----EEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCc-cCCCc-c-ccccccEEEEEecCccc---
Q 002163 228 LE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKG-L-FSKKLERYKIFIGDEWD--- 297 (958)
Q Consensus 228 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~-~~~~L~~l~l~~~~~~~--- 297 (958)
++ .++++.+.+... .........++.+.+..+... .+... + ....++...+..+....
T Consensus 199 l~~~~~~~~ls~n~l~~i------------~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFI------------QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CTTCCCEEECTTCCCCEE------------CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred hhhhhhhhhcccCccccc------------CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 43 566666655411 111112223344555443221 00000 1 22333333332221100
Q ss_pred -------cccccCCceEEEeccc--c---cChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCee
Q 002163 298 -------WSGNYKNKRVLKLKLY--T---SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFIL 365 (958)
Q Consensus 298 -------~~~~~~~l~~l~l~~~--~---~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~ 365 (958)
.......+....+... . ..+...+....+++.+.+.+... .. ...+ .....|+.|++.++.. .
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~-~~~~--~~~~~L~~L~l~~~~~-~ 341 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ER-VKDF--SYNFGWQHLELVNCKF-G 341 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EE-CGGG--GSCCCCSEEEEESCEE-S
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-cc-cccc--ccchhhhhhhcccccc-c
Confidence 0000011111111000 0 00111122334455555443211 11 1111 3344556666555431 0
Q ss_pred EEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccc-cchhhhhccCCceEEEeeccc
Q 002163 366 FIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNI-FSFSFVRGLPQLQTLNVINCK 444 (958)
Q Consensus 366 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~l~~L~~L~l~~c~ 444 (958)
. .....++.|+.+.+.+... .. ......+++|+.+.+++.. +... ........+.+|+.+++..+.
T Consensus 342 ------~-~~~~~l~~L~~l~l~~n~~-~~----~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 342 ------Q-FPTLKLKSLKRLTFTSNKG-GN----AFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ------S-CCCCBCTTCCEEEEESCCS-CC----BCCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred ------C-cCcccchhhhhcccccccC-CC----Ccccccccccccchhhccc-cccccccccchhhhhhhhhhhccccc
Confidence 0 1112344455554443211 11 1122245666666666532 2211 111223455666666665543
Q ss_pred cccccccccccCCccCCccCceeccccceEecCCCcccccccccccchhhcccccceecccCCCceeecccccCCccccc
Q 002163 445 NMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFF 524 (958)
Q Consensus 445 ~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 524 (958)
... +. .....+++|+.+.+..+......+. ..+..++.++.++++.+..-... .
T Consensus 409 ~~~-~~------------~~~~~l~~L~~l~l~~~~~~~~~~~---~~~~~l~~l~~l~ls~n~l~~~~----------~ 462 (635)
T 4g8a_A 409 VIT-MS------------SNFLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAF----------N 462 (635)
T ss_dssp EEE-EC------------SCCTTCTTCCEEECTTSEEESTTSS---CTTTTCTTCCEEECTTSCCEECC----------T
T ss_pred ccc-cc------------ccccccccccchhhhhccccccccc---ccccccccccccccccccccccc----------c
Confidence 221 11 0224567777777776654443332 22456677777777776433221 1
Q ss_pred cccccccccceeeccccc-ccccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceeccc
Q 002163 525 NEKVVFPNLETLELCAIS-TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKE 603 (958)
Q Consensus 525 ~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~ 603 (958)
.....+++++.|++++|. ...+....+. .+++|+.|++++| +++.++| ..+.++++|++|++++|. ++.++...
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~~ 537 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFP 537 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBCCCGG
T ss_pred cccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCCChhH
Confidence 122357889999999887 4444444444 3788999999985 7888744 557888999999999986 77665432
Q ss_pred ccccccceeecCcccccccccCCccceecCCCcccCCCcccEEEEecCC
Q 002163 604 SGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (958)
Q Consensus 604 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 652 (958)
.+ .+++|+.|+++++ .++.++........++|+.|+++++|
T Consensus 538 ~~-------~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 538 YK-------CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GT-------TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred Hh-------CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 11 5678999999886 46665544433223689999997643
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.6e-27 Score=277.40 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=48.2
Q ss_pred cccccceeecccccccccccCCccccccCCCcEEEEecC-----CCcccccchhhhhhcccCCEEEEeccccccceeccc
Q 002163 529 VFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC-----EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKE 603 (958)
Q Consensus 529 ~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C-----~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~ 603 (958)
.+++|+.|++++|.++.+.. .+. .+++|+.|+++++ +++....|.. +..+++|++|++++|. +..+|..
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~-~~~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~-l~~ip~~- 584 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPT-QPL--NSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSND-IRKVNEK- 584 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCC-GGG--GCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC-
T ss_pred cCCCcCEEECCCCCCCCcCh-hhh--cCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCc-CCccCHh-
Confidence 45667777777766555322 222 3677777777532 2333332433 5567777777777776 4665543
Q ss_pred ccccccceeecCcccccccccCC
Q 002163 604 SGEEATTTFVFPKVTFLKLWNLS 626 (958)
Q Consensus 604 ~~~~~~~~~~~~~L~~L~l~~c~ 626 (958)
.+++|+.|++++++
T Consensus 585 ---------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 ---------ITPNISVLDIKDNP 598 (636)
T ss_dssp ---------CCTTCCEEECCSCT
T ss_pred ---------HhCcCCEEECcCCC
Confidence 33677777777764
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4e-27 Score=278.70 Aligned_cols=193 Identities=13% Similarity=0.199 Sum_probs=150.7
Q ss_pred CCcCEEEeecCCCe-ecCCCC-CCCCccEEEcCCCcC------CC-----------------------------------
Q 002163 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCMSPRDH------SI----------------------------------- 122 (958)
Q Consensus 86 ~~~r~l~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~------~~----------------------------------- 122 (958)
.+++.|++.++.+. .+|+.+ .+++|++|++++|.. ..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47889999998886 566666 799999999988843 00
Q ss_pred ------------------------------------CcChhhhcCCCCCcEEEeeCccCcc------------------C
Q 002163 123 ------------------------------------KIPNHVFAGMSNLRGLALSNMQFLS------------------L 148 (958)
Q Consensus 123 ------------------------------------~~~~~~~~~l~~Lr~L~L~~~~i~~------------------l 148 (958)
.+|.. |+++++|++|++++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 14443 6888999999999998887 8
Q ss_pred CcccC--CCCCCCEEEccCCCCCC--ccccCCCCCccEEEccCCC-CCC--CchhhcCC------CCCCEEeccCCCCCC
Q 002163 149 PSLFH--LPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSN-IEQ--LPEEMAQL------TQLRLFDLSGCSKLK 215 (958)
Q Consensus 149 p~~i~--~l~~Lr~L~L~~~~l~~--l~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~~l~ 215 (958)
|+.++ ++++|++|++++|.+.. +..++++++|++|++++|+ ++. +|..++++ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 98888 89999999999988653 4788899999999999987 874 88888877 899999999888 77
Q ss_pred ccCh--hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc-cccc-ccEEEEE
Q 002163 216 VIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKK-LERYKIF 291 (958)
Q Consensus 216 ~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~l~l~ 291 (958)
.+|. . ++++++|++|++++|.+. +..+ .++.+++|+.|++++|.+..+|..+ .+.+ |+.+++.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~-----------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLE-----------GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCE-----------EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCc-----------cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 8887 5 889999999999888765 2234 7778888999999888877777665 4444 5555554
Q ss_pred ec
Q 002163 292 IG 293 (958)
Q Consensus 292 ~~ 293 (958)
.+
T Consensus 386 ~N 387 (636)
T 4eco_A 386 HN 387 (636)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.7e-26 Score=268.87 Aligned_cols=144 Identities=23% Similarity=0.297 Sum_probs=97.8
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (958)
.++++++++.++.+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3777777777777776554 67777777777766 45555567777777777777777765 556777777777777777
Q ss_pred CCCCccccCCCCCccEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCC--CEEEeeCCcc
Q 002163 167 ALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (958)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 238 (958)
.++.++.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 77765333 6777777777777776553 567777777777777765 44322 3344444 7777776655
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.1e-26 Score=265.88 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=123.0
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (958)
.+...++++++++.+. .+|..++ ++|++|++++|.+..+| .+|.++++||+|++++|.++.+ ..++++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4455689999999888 6887653 78999999999999887 5899999999999999999864 67999999999
Q ss_pred EEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCC
Q 002163 183 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (958)
Q Consensus 183 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 261 (958)
|++++|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+. ......+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-
Confidence 99999999999977 89999999999998 887652 33899999999999998875 2233444444
Q ss_pred CCCEEEeeccCC
Q 002163 262 HLTTLEIQICDA 273 (958)
Q Consensus 262 ~L~~L~l~~~~~ 273 (958)
+|+.|+++++.+
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 459999999876
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.1e-26 Score=273.62 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=46.7
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCc------------------cChhhcC--CCCCCCEEEeeCCccccccccccc
Q 002163 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV------------------IPPNLLS--GLSRLEDLYMGNTSVKWEFEGLNV 247 (958)
Q Consensus 188 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------~p~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~ 247 (958)
|+++.+|..++++++|++|++++|. +.. +|.. ++ ++++|++|++++|.+.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~-------- 504 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNM-------- 504 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTC--------
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCC--------
Confidence 3455567677777777777777776 555 6665 55 6777777777766544
Q ss_pred CCCcCChhhhcCCCCCCEEEeeccC
Q 002163 248 GRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
...+..++++++|+.|++++|.
T Consensus 505 ---~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 505 ---TQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp ---CSCCGGGGGCSSCCEEECTTCT
T ss_pred ---ccChHHHhCCCCCCEEECcCCC
Confidence 3345666677777777776664
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.1e-25 Score=253.22 Aligned_cols=346 Identities=19% Similarity=0.218 Sum_probs=244.5
Q ss_pred CCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEcc
Q 002163 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~ 164 (958)
..++++|++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 4689999999988888876557899999999998876 4554 7899999999999999888877 8999999999999
Q ss_pred CCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
+|.++.+..++++++|++|++++|.+..+| .++++++|++|++.++ +..++. ++++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC-----
Confidence 999888767899999999999999888887 5889999999999743 555554 789999999999888765
Q ss_pred cccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhh
Q 002163 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (958)
....+..+++|+.|+++++.+...+.... +
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------------------------------------------l 220 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITPLGI------------------------------------------L 220 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGGGGG------------------------------------------C
T ss_pred --------CChhhccCCCCCEEEecCCcccccccccc------------------------------------------c
Confidence 23457888899999998887654433112 4
Q ss_pred ccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCch
Q 002163 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (958)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (958)
++|++|+++++. +.. ++.+ ..+++|++|+++++.- . .......+++|+.|+++++ .+..+ .+..
T Consensus 221 ~~L~~L~l~~n~-l~~-~~~l--~~l~~L~~L~l~~n~l-~------~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~ 284 (466)
T 1o6v_A 221 TNLDELSLNGNQ-LKD-IGTL--ASLTNLTDLDLANNQI-S------NLAPLSGLTKLTELKLGAN-QISNI----SPLA 284 (466)
T ss_dssp TTCCEEECCSSC-CCC-CGGG--GGCTTCSEEECCSSCC-C------CCGGGTTCTTCSEEECCSS-CCCCC----GGGT
T ss_pred CCCCEEECCCCC-ccc-chhh--hcCCCCCEEECCCCcc-c------cchhhhcCCCCCEEECCCC-ccCcc----cccc
Confidence 456666665532 222 2222 5566677777766641 1 1123455666777777663 33332 1134
Q ss_pred hccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCccccc
Q 002163 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (958)
Q Consensus 405 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 484 (958)
.+++|+.|++.+| +++.+++ +..+++|+.|++++|. +..+. ....+++|++|++.+| .+++
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS-------------PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG-------------GGGGCTTCCEEECCSS-CCCC
T ss_pred CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch-------------hhccCccCCEeECCCC-ccCC
Confidence 5677788887774 4555543 5677888888887763 33333 1245778888888777 4444
Q ss_pred ccccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeeccccccccc
Q 002163 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (958)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 546 (958)
++. +..+++|+.|++++|..... .| ...+++|+.|++++|.++..
T Consensus 346 ~~~-----l~~l~~L~~L~l~~n~l~~~--------~~----~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 346 VSS-----LANLTNINWLSAGHNQISDL--------TP----LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG-----GTTCTTCCEEECCSSCCCBC--------GG----GTTCTTCCEEECCCEEEECC
T ss_pred chh-----hccCCCCCEEeCCCCccCcc--------ch----hhcCCCCCEEeccCCcccCC
Confidence 432 56778888888888753211 11 34688999999999996664
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-24 Score=248.66 Aligned_cols=347 Identities=20% Similarity=0.254 Sum_probs=272.2
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.++++++|.+.++.+. .++. +..+++|++|++++|.+..+|. ++++++|++|++++|.+..+..++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 3578999999998876 5664 6889999999999999999887 9999999999999999998766999999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.++.+|. ++++++|++|++++|. +..++. ++++++|++|++.++. . ....++++++|+.
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~-~-------------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV-T-------------DLKPLANLTTLER 181 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESC-C-------------CCGGGTTCTTCCE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcc-c-------------CchhhccCCCCCE
Confidence 9999999985 9999999999999998 888875 8999999999997532 2 2345899999999
Q ss_pred EEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCcccccccc
Q 002163 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (958)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 345 (958)
|+++++.+..++. +..+++|++|+++++. +....+
T Consensus 182 L~l~~n~l~~~~~------------------------------------------l~~l~~L~~L~l~~n~-l~~~~~-- 216 (466)
T 1o6v_A 182 LDISSNKVSDISV------------------------------------------LAKLTNLESLIATNNQ-ISDITP-- 216 (466)
T ss_dssp EECCSSCCCCCGG------------------------------------------GGGCTTCSEEECCSSC-CCCCGG--
T ss_pred EECcCCcCCCChh------------------------------------------hccCCCCCEEEecCCc-cccccc--
Confidence 9999887644321 1236788888888743 333333
Q ss_pred ccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccc
Q 002163 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (958)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 425 (958)
...+++|++|+++++. ++ .......+++|+.|+++++ .+..+ .+...+++|+.|++++| .++.+++
T Consensus 217 -~~~l~~L~~L~l~~n~-l~------~~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~ 282 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQ-LK------DIGTLASLTNLTDLDLANN-QISNL----APLSGLTKLTELKLGAN-QISNISP 282 (466)
T ss_dssp -GGGCTTCCEEECCSSC-CC------CCGGGGGCTTCSEEECCSS-CCCCC----GGGTTCTTCSEEECCSS-CCCCCGG
T ss_pred -ccccCCCCEEECCCCC-cc------cchhhhcCCCCCEEECCCC-ccccc----hhhhcCCCCCEEECCCC-ccCcccc
Confidence 3678999999999986 22 2245677899999999985 34433 22557899999999996 5666654
Q ss_pred hhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccccccccchhhcccccceeccc
Q 002163 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (958)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~ 505 (958)
+..+++|+.|++++|. +..++ ....+++|+.|+++++. ++++.. +..+++|++|+++
T Consensus 283 ---~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 283 ---LAGLTALTNLELNENQ-LEDIS-------------PISNLKNLTYLTLYFNN-ISDISP-----VSSLTKLQRLFFY 339 (466)
T ss_dssp ---GTTCTTCSEEECCSSC-CSCCG-------------GGGGCTTCSEEECCSSC-CSCCGG-----GGGCTTCCEEECC
T ss_pred ---ccCCCccCeEEcCCCc-ccCch-------------hhcCCCCCCEEECcCCc-CCCchh-----hccCccCCEeECC
Confidence 6789999999999964 44444 23578999999999984 554443 5688999999999
Q ss_pred CCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEecCCCcccc
Q 002163 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYL 573 (958)
Q Consensus 506 ~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 573 (958)
+|.--.. .....+++|+.|++++|.+.+..+ ...+++|+.|++++| .++..
T Consensus 340 ~n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 340 NNKVSDV------------SSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp SSCCCCC------------GGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCE-EEECC
T ss_pred CCccCCc------------hhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCC-cccCC
Confidence 9852211 234468999999999999776544 235899999999996 56665
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.6e-24 Score=243.59 Aligned_cols=381 Identities=17% Similarity=0.179 Sum_probs=197.7
Q ss_pred EEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc-cC-CcccCCCCCCCEEEccCCCC
Q 002163 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SL-PSLFHLPLNLQTLCLDRCAL 168 (958)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~Lr~L~L~~~~l 168 (958)
++..++.+..+|. + .++|++|++++|.+. .++...|.++++|++|++++|.+. .+ |..|.++++|++|++++|.+
T Consensus 15 ~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE-L-PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EECCSSCCSSCCC-C-CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cCcCCCCcccCCC-C-CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3444444455554 2 255666666666554 333344566666666666666554 33 34566666666666666665
Q ss_pred CCc--cccCCCCCccEEEccCCCCCC-Cchh--hcCCCCCCEEeccCCCCCCcc-ChhhcCCCCCCCEEEeeCCcccccc
Q 002163 169 GDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVI-PPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 169 ~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
..+ ..++++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~--- 167 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK--- 167 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS---
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc---
Confidence 532 456666666666666666653 2333 5666666666666665 4444 3333556666666666666544
Q ss_pred cccccCCCcCChhhhcCC--CCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHH
Q 002163 243 EGLNVGRSNASLQELKLL--SHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~ 320 (958)
...+..+..+ .+|+.|+++++.+..++..... |. ....
T Consensus 168 --------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------~~-----------------~~~~ 207 (455)
T 3v47_A 168 --------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------WE-----------------KCGN 207 (455)
T ss_dssp --------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------HH-----------------HHCC
T ss_pred --------ccChhhhhccccccccccccccCcccccchhhcc---------------cc-----------------cccc
Confidence 1222333333 3566666666655444332100 00 0000
Q ss_pred HHhhccccEEEccccCCcccccccc-ccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceecc
Q 002163 321 IMQLKGIEELYLDEVPGIKNVLYDL-DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLG 399 (958)
Q Consensus 321 ~~~l~~L~~L~L~~~~~~~~~~~~l-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 399 (958)
...+++|++|+++++.-.......+ .....++|+.|+++++..... ......++.+....
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~~~~~------------- 268 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNFKDPDNFT------------- 268 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC------CTTCCSSCCCCTTT-------------
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc------ccchhhhccCcccc-------------
Confidence 0113456666666532221111111 001225677777766642110 01111111111111
Q ss_pred CCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCC
Q 002163 400 QLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFL 479 (958)
Q Consensus 400 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 479 (958)
+.....++|+.|+++++. ++.+++ ..+..+++|++|+++++. +..+.+ .....+++|++|+++++
T Consensus 269 -~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 269 -FKGLEASGVKTCDLSKSK-IFALLK-SVFSHFTDLEQLTLAQNE-INKIDD-----------NAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp -TGGGTTSCCCEEECCSSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECCSS
T ss_pred -cccccccCceEEEecCcc-ccccch-hhcccCCCCCEEECCCCc-ccccCh-----------hHhcCcccCCEEECCCC
Confidence 111134678888888854 455433 346778889999888754 333321 01234555666666554
Q ss_pred cccccccccccchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCC
Q 002163 480 PQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNL 559 (958)
Q Consensus 480 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L 559 (958)
. ++.+.. .....+++|++|++++|.++.+....+. .+++|
T Consensus 334 ~-l~~~~~-------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L 373 (455)
T 3v47_A 334 F-LGSIDS-------------------------------------RMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNL 373 (455)
T ss_dssp C-CCEECG-------------------------------------GGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTC
T ss_pred c-cCCcCh-------------------------------------hHhcCcccCCEEECCCCcccccChhhcc--ccccc
Confidence 2 222111 0112366777777777776665444443 37888
Q ss_pred cEEEEecCCCcccccchhhhhhcccCCEEEEeccc
Q 002163 560 TRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (958)
Q Consensus 560 ~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 594 (958)
+.|++++ ++++.+ |...+..+++|++|++++++
T Consensus 374 ~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 374 KELALDT-NQLKSV-PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCS-SCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCC-CccccC-CHhHhccCCcccEEEccCCC
Confidence 8888887 467776 44556778888888888877
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=8.3e-25 Score=246.89 Aligned_cols=352 Identities=19% Similarity=0.167 Sum_probs=196.0
Q ss_pred CCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc-cCCcccCCCCCC-------------CEEEccCCCCC
Q 002163 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNL-------------QTLCLDRCALG 169 (958)
Q Consensus 104 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L-------------r~L~L~~~~l~ 169 (958)
.+..+.|+.|++++|.+ +.+|.. |+++++|++|++++|.+. .+|.+++++.+| ++|++++|.++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 34456777777777776 467755 477888888888887766 677777777654 77888888777
Q ss_pred CccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCC
Q 002163 170 DIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (958)
Q Consensus 170 ~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (958)
.++.+ .++|++|++++|.++.+|.. +.+|++|++++|. +..+|. + .++|++|++++|.+.
T Consensus 85 ~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~---------- 144 (454)
T 1jl5_A 85 SLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLE---------- 144 (454)
T ss_dssp CCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCS----------
T ss_pred cCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCC----------
Confidence 65443 36788888888877777743 3677888888776 666654 1 157788888777654
Q ss_pred CcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccE
Q 002163 250 SNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEE 329 (958)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~ 329 (958)
. .+ +++++++|++|++++|.+..+|... ++|++
T Consensus 145 -~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~--------------------------------------------~~L~~ 177 (454)
T 1jl5_A 145 -K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP--------------------------------------------PSLEF 177 (454)
T ss_dssp -S-CC-CCTTCTTCCEEECCSSCCSCCCCCC--------------------------------------------TTCCE
T ss_pred -C-Cc-ccCCCCCCCEEECCCCcCcccCCCc--------------------------------------------ccccE
Confidence 1 22 5777778888888777765554321 24555
Q ss_pred EEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCc
Q 002163 330 LYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKL 409 (958)
Q Consensus 330 L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 409 (958)
|+++++ .++. ++.+ ..+++|++|+++++. ++.+ + ...++|+.|+++++ .++.+. ..+.+++|
T Consensus 178 L~L~~n-~l~~-l~~~--~~l~~L~~L~l~~N~-l~~l------~--~~~~~L~~L~l~~n-~l~~lp----~~~~l~~L 239 (454)
T 1jl5_A 178 IAAGNN-QLEE-LPEL--QNLPFLTAIYADNNS-LKKL------P--DLPLSLESIVAGNN-ILEELP----ELQNLPFL 239 (454)
T ss_dssp EECCSS-CCSS-CCCC--TTCTTCCEEECCSSC-CSSC------C--CCCTTCCEEECCSS-CCSSCC----CCTTCTTC
T ss_pred EECcCC-cCCc-Cccc--cCCCCCCEEECCCCc-CCcC------C--CCcCcccEEECcCC-cCCccc----ccCCCCCC
Confidence 555553 2222 2333 566667777776664 1111 0 01235666666663 333331 13356677
Q ss_pred cEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccccccc
Q 002163 410 KIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQV 489 (958)
Q Consensus 410 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 489 (958)
+.|+++++ +++.+|. .+++|++|+++++. +..++ ..+++|++|+++++. ++.++.
T Consensus 240 ~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~-l~~l~---------------~~~~~L~~L~ls~N~-l~~l~~-- 294 (454)
T 1jl5_A 240 TTIYADNN-LLKTLPD-----LPPSLEALNVRDNY-LTDLP---------------ELPQSLTFLDVSENI-FSGLSE-- 294 (454)
T ss_dssp CEEECCSS-CCSSCCS-----CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSSC-CSEESC--
T ss_pred CEEECCCC-cCCcccc-----cccccCEEECCCCc-ccccC---------------cccCcCCEEECcCCc-cCcccC--
Confidence 77777763 4555542 24677777776643 44443 124667777776653 333321
Q ss_pred cchhhcccccceecccCCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEecCCC
Q 002163 490 KTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEK 569 (958)
Q Consensus 490 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~ 569 (958)
..++|+.|++++|.--.++ ...++|+.|++++|.++.+.. .+++|+.|++++| +
T Consensus 295 -----~~~~L~~L~l~~N~l~~i~--------------~~~~~L~~L~Ls~N~l~~lp~------~~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 295 -----LPPNLYYLNASSNEIRSLC--------------DLPPSLEELNVSNNKLIELPA------LPPRLERLIASFN-H 348 (454)
T ss_dssp -----CCTTCCEEECCSSCCSEEC--------------CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSS-C
T ss_pred -----cCCcCCEEECcCCcCCccc--------------CCcCcCCEEECCCCccccccc------cCCcCCEEECCCC-c
Confidence 1246677777766321111 012478888888887665432 2577888888874 6
Q ss_pred cccccchhhhhhcccCCEEEEeccccccce
Q 002163 570 LKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (958)
Q Consensus 570 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 599 (958)
++.+ |. .+++|++|++++|. +..+
T Consensus 349 l~~l-p~----~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 349 LAEV-PE----LPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp CSCC-CC----CCTTCCEEECCSSC-CSSC
T ss_pred cccc-cc----hhhhccEEECCCCC-CCcC
Confidence 7766 43 35788888888876 5543
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.9e-24 Score=233.14 Aligned_cols=170 Identities=16% Similarity=0.249 Sum_probs=99.7
Q ss_pred cCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
..++++++++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 34566777777666666554335666666666666554 3333 566666666666666666554 3666666666666
Q ss_pred cCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
++|.+..+..+..+++|++|++++|.....+..+.++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 6666665544666666666666666332222346666666666666665 555554 556666666666665543
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
....+..+++|+.|+++++.+
T Consensus 191 ---------~~~~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 191 ---------DISPLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCC
T ss_pred ---------ccccccCCCccceeecccCCC
Confidence 122255566666666665544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=7.1e-24 Score=242.05 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=122.4
Q ss_pred EEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCC-Cc--cccCCCCCccEEEccC
Q 002163 112 FFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG-DI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~-~l--~~i~~L~~L~~L~l~~ 187 (958)
.++..++.+. .+|. -.++|++|++++|.+..+ |..|+++++||+|++++|.+. .+ ..++++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4556665554 6665 237899999999999977 778999999999999999976 33 6799999999999999
Q ss_pred CCCCCC-chhhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhh-hcCCCCC
Q 002163 188 SNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE-LKLLSHL 263 (958)
Q Consensus 188 ~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L 263 (958)
|.+..+ |..++++++|++|++++|. +.. .+...++++++|++|++++|.+. ...+.. ++++++|
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L 156 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTC
T ss_pred CccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcc
Confidence 999876 7889999999999999998 664 22334789999999999999876 223333 8899999
Q ss_pred CEEEeeccCCccCCC
Q 002163 264 TTLEIQICDAMILPK 278 (958)
Q Consensus 264 ~~L~l~~~~~~~~~~ 278 (958)
+.|++++|.+...+.
T Consensus 157 ~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 157 HVLDLTFNKVKSICE 171 (455)
T ss_dssp CEEECTTCCBSCCCT
T ss_pred cEEeCCCCcccccCh
Confidence 999999998765543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=237.99 Aligned_cols=263 Identities=15% Similarity=0.143 Sum_probs=177.9
Q ss_pred CCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEcc
Q 002163 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~ 164 (958)
.+++++|++++|.+..+|....+++|++|++++|.+. .++ |..+++|++|++++|.+..+| ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 5678888888888877764447788888888888776 344 678888888888888888775 7788888888888
Q ss_pred CCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
+|.++.++ ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~----- 183 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT----- 183 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-----
Confidence 88877764 788888888888888888775 7788888888888886566663 677888888888887765
Q ss_pred cccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhh
Q 002163 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (958)
. + .++.+++|+.|++++|.+..++ + ..+
T Consensus 184 ------~--l-~l~~l~~L~~L~l~~N~l~~~~--l-----------------------------------------~~l 211 (457)
T 3bz5_A 184 ------E--L-DVSQNKLLNRLNCDTNNITKLD--L-----------------------------------------NQN 211 (457)
T ss_dssp ------C--C-CCTTCTTCCEEECCSSCCSCCC--C-----------------------------------------TTC
T ss_pred ------e--e-ccccCCCCCEEECcCCcCCeec--c-----------------------------------------ccC
Confidence 1 1 1677778888888877654432 1 114
Q ss_pred ccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCch
Q 002163 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (958)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (958)
++|+.|+++++ .++. +| +..+++|++|+++++. ++. .....+++|+.|++.+
T Consensus 212 ~~L~~L~Ls~N-~l~~-ip---~~~l~~L~~L~l~~N~-l~~-------~~~~~l~~L~~L~l~~--------------- 263 (457)
T 3bz5_A 212 IQLTFLDCSSN-KLTE-ID---VTPLTQLTYFDCSVNP-LTE-------LDVSTLSKLTTLHCIQ--------------- 263 (457)
T ss_dssp TTCSEEECCSS-CCSC-CC---CTTCTTCSEEECCSSC-CSC-------CCCTTCTTCCEEECTT---------------
T ss_pred CCCCEEECcCC-cccc-cC---ccccCCCCEEEeeCCc-CCC-------cCHHHCCCCCEEeccC---------------
Confidence 56777777663 3333 22 3667777777777764 211 1123445555544432
Q ss_pred hccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccc
Q 002163 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (958)
Q Consensus 405 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (958)
.+|+.|++++|..+..+| ...+++|+.|++++|..+..++
T Consensus 264 --n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 264 --TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp --CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEE
T ss_pred --CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceec
Confidence 245555556655554443 2456677777777766655555
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=5.6e-23 Score=232.18 Aligned_cols=314 Identities=17% Similarity=0.180 Sum_probs=208.2
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.+++|++|++++|.+. .+| .|..+++|++|++++|.+..+| ++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 4688999999999887 455 3789999999999999999886 889999999999999988775 889999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.++.+| ++++++|++|++++|. +..++ ++++++|++|++++|... .. . .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~~-~-~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------TK-L-DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------CC-C-CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------cc-c-ccccCCcCCE
Confidence 999999886 8999999999999998 87775 788999999999888432 11 1 5778889999
Q ss_pred EEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCcccccccc
Q 002163 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (958)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 345 (958)
|++++|.+..++ + ..+++|+.|+++++ .++..
T Consensus 175 L~ls~n~l~~l~--l-----------------------------------------~~l~~L~~L~l~~N-~l~~~---- 206 (457)
T 3bz5_A 175 LDCSFNKITELD--V-----------------------------------------SQNKLLNRLNCDTN-NITKL---- 206 (457)
T ss_dssp EECCSSCCCCCC--C-----------------------------------------TTCTTCCEEECCSS-CCSCC----
T ss_pred EECCCCccceec--c-----------------------------------------ccCCCCCEEECcCC-cCCee----
Confidence 999988765543 1 11456777777663 22221
Q ss_pred ccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccc
Q 002163 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (958)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 425 (958)
.+..+++|++|+++++. ++.+ +...+++|+.|+++++ .++.+ +.+.+++|+.|.+.+
T Consensus 207 ~l~~l~~L~~L~Ls~N~-l~~i-------p~~~l~~L~~L~l~~N-~l~~~-----~~~~l~~L~~L~l~~--------- 263 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNK-LTEI-------DVTPLTQLTYFDCSVN-PLTEL-----DVSTLSKLTTLHCIQ--------- 263 (457)
T ss_dssp CCTTCTTCSEEECCSSC-CSCC-------CCTTCTTCSEEECCSS-CCSCC-----CCTTCTTCCEEECTT---------
T ss_pred ccccCCCCCEEECcCCc-cccc-------CccccCCCCEEEeeCC-cCCCc-----CHHHCCCCCEEeccC---------
Confidence 23677888888888775 2111 1344555666666552 23221 223445555554332
Q ss_pred hhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccccccccchhhcccccceeccc
Q 002163 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (958)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~ 505 (958)
.+|+.|++++|..+..++ ...+++|+.|++++|+.+..++. ..+.|+.|+++
T Consensus 264 -------n~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~Ls~n~~l~~l~~-------~~~~L~~L~l~ 315 (457)
T 3bz5_A 264 -------TDLLEIDLTHNTQLIYFQ--------------AEGCRKIKELDVTHNTQLYLLDC-------QAAGITELDLS 315 (457)
T ss_dssp -------CCCSCCCCTTCTTCCEEE--------------CTTCTTCCCCCCTTCTTCCEEEC-------TTCCCSCCCCT
T ss_pred -------CCCCEEECCCCccCCccc--------------ccccccCCEEECCCCcccceecc-------CCCcceEechh
Confidence 134444445544333333 12356666666666665555542 22344444444
Q ss_pred CCCceeecccccCCccccccccccccccceeecccccccccccCCccccccCCCcEEEEecCCCccc
Q 002163 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKY 572 (958)
Q Consensus 506 ~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 572 (958)
+ .++|+.|++++|.++.+. + ..+++|+.|++++ ++++.
T Consensus 316 ~-----------------------~~~L~~L~L~~N~l~~l~---l--~~l~~L~~L~l~~-N~l~~ 353 (457)
T 3bz5_A 316 Q-----------------------NPKLVYLYLNNTELTELD---V--SHNTKLKSLSCVN-AHIQD 353 (457)
T ss_dssp T-----------------------CTTCCEEECTTCCCSCCC---C--TTCTTCSEEECCS-SCCCB
T ss_pred h-----------------------cccCCEEECCCCcccccc---c--ccCCcCcEEECCC-CCCCC
Confidence 3 346666677766655542 1 2356677777666 44544
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.5e-23 Score=226.94 Aligned_cols=303 Identities=18% Similarity=0.246 Sum_probs=237.0
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.+++|++|++.++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.++++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5789999999998876 4554 6889999999999999998887 9999999999999999998888999999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.+..+|. +.++++|++|++++|.....++. ++++++|++|++++|.+. ....++.+++|+.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYS 181 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCE
Confidence 9999999886 99999999999999975666655 899999999999988765 2233888999999
Q ss_pred EEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCcccccccc
Q 002163 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (958)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 345 (958)
|++++|.+..++....+.+|+.+.+..+... .++. +..+++|++|+++++. +....+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~-~~~~~~L~~L~l~~n~-l~~~~~-- 238 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQIT-------------------DITP-VANMTRLNSLKIGNNK-ITDLSP-- 238 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCC-------------------CCGG-GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred EEccCCcccccccccCCCccceeecccCCCC-------------------CCch-hhcCCcCCEEEccCCc-cCCCcc--
Confidence 9999998877766446778888776654431 1111 3447889999998853 333332
Q ss_pred ccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccc
Q 002163 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (958)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 425 (958)
+..+++|++|+++++. +.. ......+++|+.|+++++ .++.+ .....+++|+.|++++|. ++..++
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~------~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISD------INAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCC------CGGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred -hhcCCCCCEEECCCCc-cCC------ChhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-CCCcCh
Confidence 3788999999999885 222 245677889999999885 45544 124578999999999974 555443
Q ss_pred hhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCCCc
Q 002163 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (958)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 480 (958)
..+..+++|++|++++|+ +..++ ....+++|++|++++++
T Consensus 305 -~~l~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 -EVIGGLTNLTTLFLSQNH-ITDIR-------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHTCTTCSEEECCSSS-CCCCG-------------GGGGCTTCSEESSSCC-
T ss_pred -hHhhccccCCEEEccCCc-ccccc-------------Chhhhhccceeehhhhc
Confidence 457889999999999976 55554 23678999999999875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-23 Score=230.67 Aligned_cols=155 Identities=15% Similarity=0.286 Sum_probs=115.0
Q ss_pred CCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCc
Q 002163 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKL 180 (958)
Q Consensus 104 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L 180 (958)
...+++++.|++.++.+. .+|..+|.++++|++|++++|.+..+|. .|..+++|++|++++|.++.+ ..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 345677888888777665 6777777888888888888888877654 778888888888888887754 557788888
Q ss_pred cEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcC
Q 002163 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (958)
Q Consensus 181 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (958)
++|++++|.++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+. . ..++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~---~~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------H---VDLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------B---CCGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------c---ccccc
Confidence 8888888888888765 4778888888888887 77776665778888888888877664 1 13556
Q ss_pred CCCCCEEEeeccCCc
Q 002163 260 LSHLTTLEIQICDAM 274 (958)
Q Consensus 260 l~~L~~L~l~~~~~~ 274 (958)
+++|+.|+++++.+.
T Consensus 185 l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 185 IPSLFHANVSYNLLS 199 (390)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred ccccceeeccccccc
Confidence 677777777766543
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.4e-23 Score=236.81 Aligned_cols=180 Identities=19% Similarity=0.145 Sum_probs=118.3
Q ss_pred CCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCC-------------CcEEEeeCccCccCCc
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSN-------------LRGLALSNMQFLSLPS 150 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------Lr~L~L~~~~i~~lp~ 150 (958)
...+|.+++++|.+..+|..+ .+++|++|++++|.+.+.+|.. ++++++ +++|+++++.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 467899999999998898777 7899999999988876666755 466665 4999999999988887
Q ss_pred ccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCE
Q 002163 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 230 (958)
. .++|++|++++|.++.++. .+.+|++|++++|.++.+|.. .++|++|++++|. +..+| + ++++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCE
Confidence 3 4789999999999887643 248899999999988887742 2689999999997 88888 4 899999999
Q ss_pred EEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEE
Q 002163 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (958)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 291 (958)
|++++|.+.. .+. ...+|+.|++++|.+..+|....+++|+.+++.
T Consensus 158 L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 158 IDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp EECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred EECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence 9999887651 111 124899999999887776632244444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-22 Score=226.26 Aligned_cols=301 Identities=19% Similarity=0.222 Sum_probs=226.4
Q ss_pred CCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEE
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTL 161 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L 161 (958)
..+++++++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.+..+| ..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999864 7899999999999887 677667899999999999999999875 568999999999
Q ss_pred EccCCCCCCc-c-ccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcc
Q 002163 162 CLDRCALGDI-A-IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 162 ~L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (958)
++++|.++.+ . .++++++|++|++++|.+..++ ..++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 9999999876 3 3689999999999999999875 569999999999999998 88876 57789999999998865
Q ss_pred cccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChH
Q 002163 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (958)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (958)
. .+....+|+.|+++++.+..++...
T Consensus 199 ~----------------~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------------------- 224 (390)
T 3o6n_A 199 S----------------TLAIPIAVEELDASHNSINVVRGPV-------------------------------------- 224 (390)
T ss_dssp S----------------EEECCSSCSEEECCSSCCCEEECCC--------------------------------------
T ss_pred c----------------ccCCCCcceEEECCCCeeeeccccc--------------------------------------
Confidence 4 3445568999999998876554322
Q ss_pred HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceec
Q 002163 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (958)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (958)
.++|+.|+++++. +.+ .+.+ ..+++|++|+++++. ++.+.. ..+..+++|+.|++++ +.++.+.
T Consensus 225 -----~~~L~~L~l~~n~-l~~-~~~l--~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~-n~l~~~~- 288 (390)
T 3o6n_A 225 -----NVELTILKLQHNN-LTD-TAWL--LNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISN-NRLVALN- 288 (390)
T ss_dssp -----CSSCCEEECCSSC-CCC-CGGG--GGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCS-SCCCEEE-
T ss_pred -----cccccEEECCCCC-Ccc-cHHH--cCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCC-CcCcccC-
Confidence 2456666666632 222 2333 677788888887775 222210 2345567777777777 3455442
Q ss_pred cCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCC
Q 002163 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (958)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (958)
.....+++|+.|++++| +++.+|. .+..+++|++|+++++. +..++ ...+++|++|++++
T Consensus 289 --~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~--------------~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 289 --LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSH 348 (390)
T ss_dssp --CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCS
T ss_pred --cccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC--------------chhhccCCEEEcCC
Confidence 12245788888888886 5666653 25678888888888754 33332 24567777787777
Q ss_pred Cc
Q 002163 479 LP 480 (958)
Q Consensus 479 c~ 480 (958)
++
T Consensus 349 N~ 350 (390)
T 3o6n_A 349 ND 350 (390)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.8e-22 Score=227.39 Aligned_cols=176 Identities=22% Similarity=0.325 Sum_probs=129.6
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
+.++..++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..+ |..|+++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666666667776553 57888888888776 45555678888888888888888765 6678888888888888888
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
++.+ ..++++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----
Confidence 7765 4577888888888888877755 4567888888888888887 77776555788888888888887665
Q ss_pred cccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
......+..+++|+.|+++++.+..++.
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 2345567788888888888777655443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.9e-22 Score=234.65 Aligned_cols=155 Identities=15% Similarity=0.286 Sum_probs=124.9
Q ss_pred CCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCc
Q 002163 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKL 180 (958)
Q Consensus 104 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L 180 (958)
.+.+++++.+++.++.+. .+|..+|.++++|++|++++|.+..+|. .|+.+++|++|++++|.++.+ ..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 446678888888888776 6888888889999999999998887754 888899999999999988764 457889999
Q ss_pred cEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcC
Q 002163 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (958)
Q Consensus 181 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (958)
++|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. . ..++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~---~~~~~ 190 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------H---VDLSL 190 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------B---CCGGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------C---cChhh
Confidence 9999999988888876 4888999999999887 77777666888899999998888765 1 13566
Q ss_pred CCCCCEEEeeccCCc
Q 002163 260 LSHLTTLEIQICDAM 274 (958)
Q Consensus 260 l~~L~~L~l~~~~~~ 274 (958)
+++|+.|+++++.+.
T Consensus 191 l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 191 IPSLFHANVSYNLLS 205 (597)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred hhhhhhhhcccCccc
Confidence 778888888877654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.3e-22 Score=231.89 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=227.2
Q ss_pred CCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEE
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTL 161 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L 161 (958)
..+++.+++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|+|++|.+..+|. .|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 468899999999999998865 6899999999999987 5666678999999999999999998865 67999999999
Q ss_pred EccCCCCCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcc
Q 002163 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (958)
++++|.++.+ ..++++++|++|++++|.+..+| ..++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 9999999876 34799999999999999999775 469999999999999998 88886 56789999999998865
Q ss_pred cccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChH
Q 002163 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (958)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (958)
. .+....+|+.|++++|.+..++...
T Consensus 205 ~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-------------------------------------- 230 (597)
T 3oja_B 205 S----------------TLAIPIAVEELDASHNSINVVRGPV-------------------------------------- 230 (597)
T ss_dssp S----------------EEECCTTCSEEECCSSCCCEEECSC--------------------------------------
T ss_pred c----------------cccCCchhheeeccCCccccccccc--------------------------------------
Confidence 4 3455668999999998876554332
Q ss_pred HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceec
Q 002163 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (958)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (958)
.++|+.|+++++. +.+ ++.+ ..+++|++|+++++.-....+ ..+..+++|+.|++++ +.+..+.
T Consensus 231 -----~~~L~~L~L~~n~-l~~-~~~l--~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-N~l~~l~- 294 (597)
T 3oja_B 231 -----NVELTILKLQHNN-LTD-TAWL--LNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISN-NRLVALN- 294 (597)
T ss_dssp -----CSCCCEEECCSSC-CCC-CGGG--GGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTT-SCCCEEE-
T ss_pred -----CCCCCEEECCCCC-CCC-Chhh--ccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCC-CCCCCCC-
Confidence 2356666666632 222 2333 677788888887775221111 2345667778887777 4455442
Q ss_pred cCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccccccccccccccCCccCCccCceeccccceEecCC
Q 002163 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (958)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (958)
.....+++|+.|++++| .++.+|. .+..+++|+.|++++|. +..++ ...+++|+.|++++
T Consensus 295 --~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--------------~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 295 --LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSH 354 (597)
T ss_dssp --CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCS
T ss_pred --cccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC--------------hhhcCCCCEEEeeC
Confidence 22245788888888885 4666653 35778888888888864 33332 24577788888877
Q ss_pred Cc
Q 002163 479 LP 480 (958)
Q Consensus 479 c~ 480 (958)
++
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=223.14 Aligned_cols=303 Identities=19% Similarity=0.248 Sum_probs=221.4
Q ss_pred CcccCCCccccCCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-
Q 002163 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS- 150 (958)
Q Consensus 74 ~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~- 150 (958)
.+...++ ...+..+++|++.+|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|+|++|.+..+|.
T Consensus 21 ~~l~~ip-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVP-EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCCSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCcCcCC-CCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 3444443 3467899999999999998864 33 7999999999999887 5655668999999999999999999986
Q ss_pred ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCC
Q 002163 151 LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (958)
.|.++++|++|++++|.+..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|...++++++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCC
Confidence 579999999999999998854 6799999999999999999876 4689999999999999998 99999887999999
Q ss_pred CCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC-ccCCCcc-ccccccEEEEEecCccccccccCCc
Q 002163 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA-MILPKGL-FSKKLERYKIFIGDEWDWSGNYKNK 305 (958)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l 305 (958)
|++|++++|.+. ......+..+++|+.|+++++.. ..++... ...
T Consensus 178 L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------------- 224 (477)
T 2id5_A 178 LIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL---------------------- 224 (477)
T ss_dssp CCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC----------------------
T ss_pred CcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccCc----------------------
Confidence 999999999876 23455788899999999998763 3344332 222
Q ss_pred eEEEecccccChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchh
Q 002163 306 RVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESL 385 (958)
Q Consensus 306 ~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L 385 (958)
+|++|+++++ .++. ++...+..+++|++|+++++. +..++. ..+..+++|+.|
T Consensus 225 --------------------~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L 277 (477)
T 2id5_A 225 --------------------NLTSLSITHC-NLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQEI 277 (477)
T ss_dssp --------------------CCSEEEEESS-CCCS-CCHHHHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTCCEE
T ss_pred --------------------cccEEECcCC-cccc-cCHHHhcCccccCeeECCCCc-CCccCh----hhccccccCCEE
Confidence 4555555443 2222 121112455666666666654 222211 123445666666
Q ss_pred hccccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEeeccc
Q 002163 386 VLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (958)
Q Consensus 386 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 444 (958)
++++ +.++.+.. .....+++|+.|+++++ +++.+++ ..+..+++|++|++++++
T Consensus 278 ~L~~-n~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVG-GQLAVVEP--YAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCS-SCCSEECT--TTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred ECCC-CccceECH--HHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 6666 33443321 12336788888888884 5777654 446778889999988754
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.8e-20 Score=203.62 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=100.4
Q ss_pred CccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEc
Q 002163 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (958)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l 185 (958)
+++.++++++.+. .+|..+ .++|++|++++|.+..++ ..|.++++|++|++++|.++.+ ..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666777666655 555443 246777777777777663 4677777777777777776643 56777777777777
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.++.+|..+. ++|++|++++|. +..+|.+.++++++|++|++++|.+... ...+..++.+ +|+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CCSC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-ccCE
Confidence 7777777776554 677777777776 6667666567777777777777665310 1234455555 6777
Q ss_pred EEeeccCCccCCCc
Q 002163 266 LEIQICDAMILPKG 279 (958)
Q Consensus 266 L~l~~~~~~~~~~~ 279 (958)
|+++++.+..+|..
T Consensus 177 L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 177 LRISEAKLTGIPKD 190 (332)
T ss_dssp CBCCSSBCSSCCSS
T ss_pred EECcCCCCCccCcc
Confidence 77777766655543
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.6e-20 Score=202.63 Aligned_cols=173 Identities=18% Similarity=0.297 Sum_probs=135.8
Q ss_pred CCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
..+++.|++.+|.+..+|..+ .+++|++|++++|.+. .+|.. |.++++|++|++++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 367888888888888887765 6788888888888877 67754 57888888888888888888888888888888888
Q ss_pred cCCCC-CCc-cccC---------CCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEE
Q 002163 164 DRCAL-GDI-AIIG---------NLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (958)
Q Consensus 164 ~~~~l-~~l-~~i~---------~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 232 (958)
++|.+ ..+ ..++ .+++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 88763 333 4443 4888888888888888888888888888888888887 7778876 78888888888
Q ss_pred eeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccC
Q 002163 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (958)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (958)
+++|.+. ...+..++.+++|+.|++++|.
T Consensus 236 Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 236 LRGCTAL-----------RNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CTTCTTC-----------CBCCCCTTCCCCCCEEECTTCT
T ss_pred CcCCcch-----------hhhHHHhcCCCCCCEEECCCCC
Confidence 8887655 3345667778888888887765
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=8.9e-20 Score=198.04 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=80.4
Q ss_pred CccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEc
Q 002163 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (958)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l 185 (958)
+++.++++++.+. .+|..+ .+.|++|++++|.+..+|. .|+++++|++|++++|.++.+ ..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3445555444443 344322 1345555555555555543 455555555555555555533 44555555555555
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+.. ....+..++.+++|+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCE
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCE
Confidence 5555555554443 456666666555 555555545556666666665554431 0122344555566666
Q ss_pred EEeeccCCccCCC
Q 002163 266 LEIQICDAMILPK 278 (958)
Q Consensus 266 L~l~~~~~~~~~~ 278 (958)
|+++++.+..+|.
T Consensus 176 L~l~~n~l~~l~~ 188 (330)
T 1xku_A 176 IRIADTNITTIPQ 188 (330)
T ss_dssp EECCSSCCCSCCS
T ss_pred EECCCCccccCCc
Confidence 6666555544443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=6e-20 Score=198.22 Aligned_cols=222 Identities=23% Similarity=0.342 Sum_probs=138.6
Q ss_pred CCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEecc
Q 002163 131 GMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (958)
Q Consensus 131 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 209 (958)
...++++|+++++.+..+|..++++++|++|++++|.++.+ ..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34667777777777777777777777777777777777654 56777778888888877777777778888888888888
Q ss_pred CCCCCCccChhhcC---------CCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc
Q 002163 210 GCSKLKVIPPNLLS---------GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (958)
Q Consensus 210 ~~~~l~~~p~~~i~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (958)
+|.....+|.. ++ ++++|++|++++|.+. ..+..++++++|+.|++++|.+..+|..+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 77656677765 33 3666666666666543 23445666666666666666544333221
Q ss_pred ccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCccccccccccccccccceEeecc
Q 002163 281 FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQN 360 (958)
Q Consensus 281 ~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~ 360 (958)
..+++|++|+++++......+..+ ..+++|++|++++
T Consensus 226 -----------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 226 -----------------------------------------HHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKD 262 (328)
T ss_dssp -----------------------------------------GGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTT
T ss_pred -----------------------------------------ccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCC
Confidence 113445555555433332222222 4455555555555
Q ss_pred CCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCceEEEe
Q 002163 361 NPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNV 440 (958)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 440 (958)
|.. ...+. ...+.+++|+.|++++|+.+..+|. .+.++++|+.+.+
T Consensus 263 n~~-----------------------------~~~~p---~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 263 CSN-----------------------------LLTLP---LDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CTT-----------------------------CCBCC---TTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred CCc-----------------------------hhhcc---hhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 542 22211 1133567788888888777777763 3677777777776
Q ss_pred ec
Q 002163 441 IN 442 (958)
Q Consensus 441 ~~ 442 (958)
..
T Consensus 309 ~~ 310 (328)
T 4fcg_A 309 PP 310 (328)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.3e-19 Score=193.57 Aligned_cols=171 Identities=21% Similarity=0.308 Sum_probs=108.0
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (958)
+++.+++.++.+..+|..+. +.+++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45666666666666665443 56777777777665 45555567777777777777777655 56677777777777777
Q ss_pred CCCCCc-cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCccccc
Q 002163 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (958)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (958)
|.++.+ ..+. ++|++|++++|.+..+|. .++++++|++|++++|. +.. +....++++++|++|++++|.+..
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 776654 3332 677777777777776653 46777777777777776 432 222336677777777777766541
Q ss_pred ccccccCCCcCChhhhcCCCCCCEEEeeccCCccC
Q 002163 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (958)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (958)
.+..+ .++|+.|++++|.+..+
T Consensus 186 -----------l~~~~--~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 186 -----------IPQGL--PPSLTELHLDGNKITKV 207 (330)
T ss_dssp -----------CCSSC--CTTCSEEECTTSCCCEE
T ss_pred -----------CCccc--cccCCEEECCCCcCCcc
Confidence 11111 15677777777665443
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2.7e-21 Score=228.75 Aligned_cols=127 Identities=17% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCCCcEEEeeCccCcc-CCcccCCC--CCCCEEEccCCC-CC--Cc-cccCCCCCccEEEccCCCCCC-----Cchhhc
Q 002163 131 GMSNLRGLALSNMQFLS-LPSLFHLP--LNLQTLCLDRCA-LG--DI-AIIGNLKKLEILSLVDSNIEQ-----LPEEMA 198 (958)
Q Consensus 131 ~l~~Lr~L~L~~~~i~~-lp~~i~~l--~~Lr~L~L~~~~-l~--~l-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~ 198 (958)
.+++|++|+|+++.+.. .+..+... .+|++|++++|. +. .+ ....++++|++|++++|.+.. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56666666666665542 22233332 236666666665 22 11 222356666666666665432 233345
Q ss_pred CCCCCCEEeccCCCCCCccCh----hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeec
Q 002163 199 QLTQLRLFDLSGCSKLKVIPP----NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (958)
Q Consensus 199 ~L~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (958)
.+++|++|+++++. +..+.. ..+.++++|++|++.+|.+. ..+..++.+++|+.|+++.
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence 56666666666665 432221 11345666666666665443 1344556666666666654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2e-20 Score=200.87 Aligned_cols=244 Identities=16% Similarity=0.163 Sum_probs=173.3
Q ss_pred CCcCEEEeecCCCe---ecCCCC-CCCCccEEEcCC-CcCCCCcChhhhcCCCCCcEEEeeCccCc-cCCcccCCCCCCC
Q 002163 86 KNCPTIFLHDCKHW---EVPEGL-EYPQLEFFCMSP-RDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQ 159 (958)
Q Consensus 86 ~~~r~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr 159 (958)
.++++|++.++.+. .+|..+ .+++|++|++++ |.+...+|.. |.++++|++|++++|.+. .+|..|+++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888888888776 456555 678888888874 6666556644 578888888888888887 6777888888888
Q ss_pred EEEccCCCCC-C-ccccCCCCCccEEEccCCCCC-CCchhhcCCC-CCCEEeccCCCCCC-ccChhhcCCCCCCCEEEee
Q 002163 160 TLCLDRCALG-D-IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLT-QLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMG 234 (958)
Q Consensus 160 ~L~L~~~~l~-~-l~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~ 234 (958)
+|++++|.+. . +..++++++|++|++++|.+. .+|..++++. +|++|++++|. +. .+|.. ++.+. |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECc
Confidence 8888888876 3 367788888888888888877 7788888887 78888888887 54 45554 67776 8888888
Q ss_pred CCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccc
Q 002163 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (958)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (958)
+|.+. ...+..++.+++|+.|++++|.+...+..+
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------- 240 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------------------------------- 240 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------------
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcc----------------------------------
Confidence 87765 335667778888888888777643222111
Q ss_pred cChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccc
Q 002163 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHL 393 (958)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 393 (958)
..+++|++|+++++.-....+..+ ..+++|++|+++++.-...+ +....+++|+.|++.+.+.+
T Consensus 241 -------~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~i------p~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 241 -------GLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEI------PQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -------CCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEEC------CCSTTGGGSCGGGTCSSSEE
T ss_pred -------cccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccC------CCCccccccChHHhcCCCCc
Confidence 125688888888754332333333 78899999999988632222 33367889999999886543
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.7e-20 Score=221.92 Aligned_cols=336 Identities=14% Similarity=0.045 Sum_probs=205.5
Q ss_pred cccccceeecccccccccccCCcc--ccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccccccceecccccc
Q 002163 529 VFPNLETLELCAISTEKIWCNQLA--AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 606 (958)
Q Consensus 529 ~~~~L~~L~l~~~~l~~~~~~~~~--~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 606 (958)
.+++|++|+++++.++.+....++ ...+++|+.|++++| .+..+ + ..+..+++|++|+++++.........
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~---- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEK---- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTS----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH-H-HHHhhhhHHHhhcccccccccchHHH----
Confidence 466777777777765422111111 023688999999886 45555 3 45778889999999864422111100
Q ss_pred cccceeecCcccccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeee
Q 002163 607 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 686 (958)
Q Consensus 607 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (958)
......+++|+.|.+.++. ...++.. ...+++|++|++++|. +..... ......
T Consensus 263 -~~~l~~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~-l~~~~~---------------------~~~~~~ 316 (592)
T 3ogk_B 263 -YMNLVFPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYAL-LETEDH---------------------CTLIQK 316 (592)
T ss_dssp -SSCCCCCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCC-CCHHHH---------------------HHHHTT
T ss_pred -HHHhhccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCc-CCHHHH---------------------HHHHHh
Confidence 0111156778888877642 2222221 2347889999999987 432110 000145
Q ss_pred cCceeEEeeccchhhhhhhccCCccccccccEEEeee----------CCCCc--ccHHHHhhcCCCcEEEEEcceeeeec
Q 002163 687 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN----------DESEN--FRIGFLERFHNLEKLELRWSSYKEIF 754 (958)
Q Consensus 687 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~----------c~~~~--~~~~~l~~l~~L~~L~i~c~~l~~~~ 754 (958)
+++|++|+++.+-.....+ .....+++|++|++++ |..+. ........+++|++|++.|+.+.+..
T Consensus 317 ~~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred CcCCCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 7899999998432222111 1123578899999995 76662 22334567999999999888776431
Q ss_pred cchhhhhhhh-hccccceEEecC---ccCccccccC-C-CCCccccCCccEEEEeccCC-cc--cccCCccccCcccEEE
Q 002163 755 SNEEIVEHAE-MLTQVKSLKLWE---LSDLMYIWKQ-D-SKLDSITENLESLEVWWCEN-LI--NLVPSSASFKNLTTLE 825 (958)
Q Consensus 755 ~~~~~~~~~~-~l~~L~~L~l~~---c~~l~~l~~~-~-~~~~~~l~~L~~L~i~~c~~-l~--~l~~~~~~~~~L~~L~ 825 (958)
. ..+. .+++|+.|++.+ |..++..+.. + ......+++|++|+++.|.. +. .+......+++|+.|+
T Consensus 395 ~-----~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 395 L-----ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp H-----HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred H-----HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 1 1233 478999999984 4455542110 0 01145689999999988775 21 2222224478999999
Q ss_pred EccCcCCccccchHhhhcCCCccEEEEcccchhHHHhccCcccccccccccccceeccccCcccccccCCCccccCCCcc
Q 002163 826 LWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLE 905 (958)
Q Consensus 826 i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~ 905 (958)
+++|. ++......++..+++|++|+|++|+ +....... ....+++|+.|++++|+ ++..........+|.|.
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-----AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH-----HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH-----HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 99774 6654445677888999999999997 33211000 11247899999999998 76665544445678887
Q ss_pred EEEeccC
Q 002163 906 DLFVIEC 912 (958)
Q Consensus 906 ~L~i~~C 912 (958)
...|...
T Consensus 542 ~~~~~~~ 548 (592)
T 3ogk_B 542 IELIPSR 548 (592)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 7777654
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5.4e-19 Score=191.90 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=146.3
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (958)
+++.+++.++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3455555555555555443 245566666655554 34444455566666666666655544 44555666666666666
Q ss_pred CCCCCc-cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCccccc
Q 002163 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (958)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (958)
|.++.+ ..+. ++|++|++++|.+..+|. .++++++|++|++++|. +.. ++...++.+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 655543 2222 556666666665555543 35556666666666555 431 222224444 55555555554430
Q ss_pred ccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCc-c-ccccccEEEEEecCccccccccCCceEEEecccccChH-
Q 002163 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG-L-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD- 318 (958)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~- 318 (958)
.+..+. ++|+.|++++|.+..++.. + .+.+|+.+++..+.+- .++
T Consensus 187 -----------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-------------------~~~~ 234 (332)
T 2ft3_A 187 -----------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------------------MIEN 234 (332)
T ss_dssp -----------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-------------------CCCT
T ss_pred -----------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-------------------cCCh
Confidence 111111 3555555555555444422 2 3444554444333220 010
Q ss_pred HHHHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCccc---ccccccccchhhccccccccc
Q 002163 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWV---RYNAFLLLESLVLHNLIHLEK 395 (958)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~l~~ 395 (958)
..+..+++|++|+++++ .+...+..+ ..+++|++|+++++. ++.++. ..+. ....+++|+.|++.+.+ +..
T Consensus 235 ~~~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~-l~~~~~-~~~~~~~~~~~~~~l~~L~l~~N~-~~~ 308 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNN-KLSRVPAGL--PDLKLLQVVYLHTNN-ITKVGV-NDFCPVGFGVKRAYYNGISLFNNP-VPY 308 (332)
T ss_dssp TGGGGCTTCCEEECCSS-CCCBCCTTG--GGCTTCCEEECCSSC-CCBCCT-TSSSCSSCCSSSCCBSEEECCSSS-SCG
T ss_pred hHhhCCCCCCEEECCCC-cCeecChhh--hcCccCCEEECCCCC-CCccCh-hHccccccccccccccceEeecCc-ccc
Confidence 02234678888888874 444433333 778889999998875 333321 1111 11225678888888854 332
Q ss_pred eeccCCCchhccCccEEEEecCC
Q 002163 396 ICLGQLRAESFYKLKIIKVRNCD 418 (958)
Q Consensus 396 ~~~~~~~~~~~~~L~~L~l~~c~ 418 (958)
+.........+++|+.+++.++.
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC----
T ss_pred cccCcccccccchhhhhhccccc
Confidence 21111223457788888888764
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=5e-19 Score=187.67 Aligned_cols=183 Identities=27% Similarity=0.436 Sum_probs=131.5
Q ss_pred ccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCcc-CccC-CcccCCCCCC
Q 002163 83 DMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNL 158 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~L 158 (958)
..+.++++|++.+|.+..++.. + .+++|++|++++|.+. .+....|.++++|++|++++|. +..+ |..+..+++|
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3466778888888777777643 2 6778888888777765 4544556777888888888876 7666 5677777888
Q ss_pred CEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeC
Q 002163 159 QTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (958)
Q Consensus 159 r~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (958)
++|++++|.+..+ ..++++++|++|++++|.+..+|. .++++++|++|++++|. +..+|...++++++|++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 8888888877654 557777888888888887777764 37777888888888776 7777766577778888888877
Q ss_pred CcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
|.+. ...+..++.+++|+.|++++|.+..++.
T Consensus 187 n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 187 NRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred Cccc-----------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 7665 2335567777778888887777655443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=193.49 Aligned_cols=257 Identities=18% Similarity=0.240 Sum_probs=133.3
Q ss_pred EEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCC
Q 002163 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG 169 (958)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~ 169 (958)
.+..++.++++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4445555555555432 35666666666554 34444456666666666666666544 334666666666666666655
Q ss_pred Cc--cccCCCCCccEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccc
Q 002163 170 DI--AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 170 ~l--~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
.+ ..++++++|++|++++|.++.+|. .++++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC------
Confidence 44 225566666666666666665554 45566666666666653355554444556666666666655543
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEEEEEecCccccc-------cccCCceEEEeccc---
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDWS-------GNYKNKRVLKLKLY--- 313 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~-------~~~~~l~~l~l~~~--- 313 (958)
...+..++.+++|++|+++++.+..++... ..++|+.+++..+.+-... .....++.+.+...
T Consensus 188 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 188 -----SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred -----ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 223445555566666666666554444333 2455555555544331110 00111222222111
Q ss_pred c---cChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 314 T---SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 314 ~---~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
+ ..++..+..+++|++|+++++ .++. ++...+..+++|++|++++++
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRN-QLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CcchhhhHHHHhcccCCCEEECCCC-CCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 0 123334556667777777663 3332 222122556667777776664
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.5e-19 Score=194.05 Aligned_cols=249 Identities=14% Similarity=0.143 Sum_probs=196.1
Q ss_pred CCccEEEcCCCcCCC--CcChhhhcCCCCCcEEEeeC-ccCc-cCCcccCCCCCCCEEEccCCCCC-C-ccccCCCCCcc
Q 002163 108 PQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSN-MQFL-SLPSLFHLPLNLQTLCLDRCALG-D-IAIIGNLKKLE 181 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~-l~~i~~L~~L~ 181 (958)
.+++.|+++++.+.. .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.+. . +..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999886 66754 69999999999995 7776 78999999999999999999987 3 47899999999
Q ss_pred EEEccCCCCC-CCchhhcCCCCCCEEeccCCCCCC-ccChhhcCCCC-CCCEEEeeCCcccccccccccCCCcCChhhhc
Q 002163 182 ILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLS-RLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 258 (958)
Q Consensus 182 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (958)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. ++++. +|++|++++|.+. ...+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHHh
Confidence 9999999988 789999999999999999998 66 78877 88888 9999999999876 34566777
Q ss_pred CCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCc
Q 002163 259 LLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 338 (958)
Q Consensus 259 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 338 (958)
.++ |+.|++++|.+...+.. .+..+++|+.|+++++ .+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~----------------------------------------~~~~l~~L~~L~L~~N-~l 233 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASV----------------------------------------LFGSDKNTQKIHLAKN-SL 233 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGG----------------------------------------GCCTTSCCSEEECCSS-EE
T ss_pred CCc-ccEEECcCCcccCcCCH----------------------------------------HHhcCCCCCEEECCCC-ce
Confidence 777 99999998875433221 1122568888888874 33
Q ss_pred cccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCC
Q 002163 339 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 418 (958)
Q Consensus 339 ~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 418 (958)
...++.+ ..+++|++|+++++.-...++ ..+..+++|+.|+++++ .+.... ...+.+++|+.+++.+.+
T Consensus 234 ~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N-~l~~~i---p~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGKV--GLSKNLNGLDLRNNRIYGTLP-----QGLTQLKFLHSLNVSFN-NLCGEI---PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBGGGC--CCCTTCCEEECCSSCCEECCC-----GGGGGCTTCCEEECCSS-EEEEEC---CCSTTGGGSCGGGTCSSS
T ss_pred eeecCcc--cccCCCCEEECcCCcccCcCC-----hHHhcCcCCCEEECcCC-cccccC---CCCccccccChHHhcCCC
Confidence 3344444 778999999999987432221 34677899999999985 444221 223578999999999987
Q ss_pred Ccccc
Q 002163 419 KLKNI 423 (958)
Q Consensus 419 ~l~~l 423 (958)
.+...
T Consensus 303 ~lc~~ 307 (313)
T 1ogq_A 303 CLCGS 307 (313)
T ss_dssp EEEST
T ss_pred CccCC
Confidence 66654
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.3e-20 Score=223.18 Aligned_cols=383 Identities=14% Similarity=0.067 Sum_probs=198.6
Q ss_pred ccccceEecCCCcccccccccccchhhcccccceecccCCCceeecccccCCccccc-cccccccccceeeccccc--cc
Q 002163 468 FSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFF-NEKVVFPNLETLELCAIS--TE 544 (958)
Q Consensus 468 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~--l~ 544 (958)
+++|++|++.+|..++.... ......+++|++|++++|. +...+ ...+ .....+++|++|++++|. +.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~-i~~~~------~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGL--AAIAATCRNLKELDLRESD-VDDVS------GHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHH--HHHHHHCTTCCEEECTTCE-EECCC------GGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred CCCCcEEeCCCcCCCCHHHH--HHHHHhCCCCCEEeCcCCc-cCCcc------hHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 55666666666654433110 0112355666666666664 11100 0001 111246789999998886 22
Q ss_pred ccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEecccc------ccceecccccccccceeecCccc
Q 002163 545 KIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSS------LESIVGKESGEEATTTFVFPKVT 618 (958)
Q Consensus 545 ~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~------l~~i~~~~~~~~~~~~~~~~~L~ 618 (958)
......+. ..+++|++|++++|..++.+ + ..+..+++|++|.+.+|.. +..++.. ...+++|+
T Consensus 200 ~~~l~~l~-~~~~~L~~L~L~~~~~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--------l~~~~~L~ 268 (594)
T 2p1m_B 200 FSALERLV-TRCPNLKSLKLNRAVPLEKL-A-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA--------LSGCKELR 268 (594)
T ss_dssp HHHHHHHH-HHCTTCCEEECCTTSCHHHH-H-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH--------HHTCTTCC
T ss_pred HHHHHHHH-HhCCCCcEEecCCCCcHHHH-H-HHHhcCCcceEcccccccCccchhhHHHHHHH--------HhcCCCcc
Confidence 11100110 13588999999998777774 3 4577888999998887752 1111100 01344555
Q ss_pred cc-ccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCccCCccccceeeeeeecCceeEEeecc
Q 002163 619 FL-KLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSG 697 (958)
Q Consensus 619 ~L-~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 697 (958)
.| .+.+... ..++. ....+++|++|++++|. +..-.. ......+++|++|++++
T Consensus 269 ~Ls~~~~~~~-~~l~~--~~~~~~~L~~L~L~~~~-l~~~~l---------------------~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 269 CLSGFWDAVP-AYLPA--VYSVCSRLTTLNLSYAT-VQSYDL---------------------VKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp EEECCBTCCG-GGGGG--GHHHHTTCCEEECTTCC-CCHHHH---------------------HHHHTTCTTCCEEEEEG
T ss_pred cccCCcccch-hhHHH--HHHhhCCCCEEEccCCC-CCHHHH---------------------HHHHhcCCCcCEEeCcC
Confidence 54 2222111 11111 11146889999998887 442110 00013568899999988
Q ss_pred chhhhhhhccCCccccccccEEEeeeC--------CCCc--ccHHHHhhcCCCcEEEEEcceeeeeccchhhhhhhhhcc
Q 002163 698 KDIAMICQSQFPKHIFRNLKNLEVVND--------ESEN--FRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 767 (958)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~L~~L~i~~c--------~~~~--~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~ 767 (958)
|-...... .....+++|+.|++.+| ..+. ........+++|+.|.+.|+.+.+.... .-...++
T Consensus 324 ~~~~~~l~--~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~----~l~~~~~ 397 (594)
T 2p1m_B 324 YIEDAGLE--VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI----TIARNRP 397 (594)
T ss_dssp GGHHHHHH--HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH----HHHHHCT
T ss_pred ccCHHHHH--HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH----HHHhhCC
Confidence 72211110 01124678899988553 3331 1122334588888887667777542111 0123477
Q ss_pred ccceEEec-----CccCcccccc-CCC-CCccccCCccEEEEeccCCccc--ccCCccccCcccEEEEccCcCCccccch
Q 002163 768 QVKSLKLW-----ELSDLMYIWK-QDS-KLDSITENLESLEVWWCENLIN--LVPSSASFKNLTTLELWYCQRLMNLVTS 838 (958)
Q Consensus 768 ~L~~L~l~-----~c~~l~~l~~-~~~-~~~~~l~~L~~L~i~~c~~l~~--l~~~~~~~~~L~~L~i~~C~~l~~l~~~ 838 (958)
+|+.|++. +|..++..+. .+. .....+++|++|++++ .+.. ++.....+++|+.|++++|. +++....
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~ 474 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH 474 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence 88888888 5666653211 000 0134567788888865 3321 11111236778888887764 5544334
Q ss_pred HhhhcCCCccEEEEcccchhHHHhccCcccccccccccccceeccccCcccccccCCCccccCCCccEEEecc
Q 002163 839 STAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIE 911 (958)
Q Consensus 839 ~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~ 911 (958)
.++..+++|++|++++|+.-....... ...+++|+.|.+++|+. ..-........+|.|+...+..
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLAN------ASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHT------GGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHH------HHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 444667888888888886411111100 11367788888887764 2111111113456665544443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=8.8e-19 Score=198.19 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=125.2
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (958)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566666666677776553 67777888777766 455556777888888888888777665 56777788888888888
Q ss_pred CCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
.++.+ ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 77755 357777888888888877777664 57777888888887766677777766777888888888777654
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCCccCC
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (958)
.+..+..+++|+.|++++|.+..++
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred ---------cccccCCCcccCEEECCCCccCccC
Confidence 2234677777888888777765553
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.1e-19 Score=191.53 Aligned_cols=177 Identities=20% Similarity=0.256 Sum_probs=89.8
Q ss_pred CCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCC--cChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCE
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIK--IPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQT 160 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 160 (958)
+.++++|++.+|.+..++... .+++|++|++++|.+... .+.. +..+++|++|++++|.+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 345555555555555555432 455555555555544310 1222 33455555555555555555555555555555
Q ss_pred EEccCCCCCCc---cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEee
Q 002163 161 LCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMG 234 (958)
Q Consensus 161 L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~ 234 (958)
|++++|.++.+ ..+..+++|++|++++|.+... |..+.++++|++|++++|. +.. +|.. ++.+++|++|+++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls 183 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLS 183 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECC
Confidence 55555554432 2455555555555555555432 3345555555555555554 332 3333 4555555555555
Q ss_pred CCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCcc
Q 002163 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (958)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (958)
+|.+. ...+..++.+++|+.|++++|.+..
T Consensus 184 ~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 184 QCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCC-----------EECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcC-----------CcCHHHhcCCCCCCEEECCCCccCc
Confidence 55443 1223445555555555555555433
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=189.32 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=139.9
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (958)
.|+.....+++++.+. .+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++.+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4566667888888777 7887653 589999999999998876 899999999999999999865 67999999999
Q ss_pred EEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccCh-hhcCCCCCCCEEEeeCCc-ccccccccccCCCcCChhhhcC
Q 002163 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKL 259 (958)
Q Consensus 183 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~ 259 (958)
|++++|.++.+|.. ++++++|++|++++|. +..+|. +.++++++|++|++++|. +. ...+..+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~~~ 172 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDFAG 172 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHccC
Confidence 99999999999876 8999999999999998 889987 558999999999999984 33 233567889
Q ss_pred CCCCCEEEeeccCCccCC-Ccc-ccccccEEEEEe
Q 002163 260 LSHLTTLEIQICDAMILP-KGL-FSKKLERYKIFI 292 (958)
Q Consensus 260 l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~l~l~~ 292 (958)
+++|+.|++++|.+..+. ..+ .+++|+.+++..
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 999999999999876553 333 444555555443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.1e-18 Score=198.16 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=130.6
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (958)
.+.++..+..+..+|..+. +++++|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4566666667777776553 67888888888776 455556788888888888888887664 57788888888888888
Q ss_pred CCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
.++.+ ..++.+++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 209 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc----
Confidence 87754 457788888888888888887764 57788888888888876677887766778888888888887765
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCCccCC
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (958)
....+..+++|+.|++++|.+..++
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred ---------ccccccccccccEEECcCCcCcccC
Confidence 1235777788888888887765543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.4e-18 Score=181.26 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=151.4
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (958)
.+.++..++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367788888888888655 479999999999987 57777789999999999999999977 778999999999999999
Q ss_pred C-CCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccc
Q 002163 167 A-LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 167 ~-l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
. +..+ ..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc---
Confidence 7 8765 7799999999999999999987 5678999999999999998 88888877899999999999999875
Q ss_pred cccccCCCcCChhhhcCCCCCCEEEeeccCCccC
Q 002163 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (958)
......+..+++|+.|++++|.+..+
T Consensus 167 --------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 --------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp --------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred --------ccCHHHhcCccccCEEECCCCccccc
Confidence 22344688899999999999987654
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=3e-20 Score=219.89 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=27.1
Q ss_pred ccccceeecccccccccccCCccccccCCCcEEEEecCCCcccccchhhhhhcccCCEEEEeccc
Q 002163 530 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (958)
Q Consensus 530 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 594 (958)
+++|+.|++++|.+++.....+. ..+++|+.|++++|+. +......++..+++|++|++++|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~-~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVL-SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHH-HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHH-hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 44555555555543322111110 1245555555555543 322122233445555555555554
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.2e-17 Score=191.69 Aligned_cols=255 Identities=20% Similarity=0.168 Sum_probs=182.3
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (958)
+++.+++.++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 58899999999998888765 89999999999877 5664 57899999999999999987 6789999999999
Q ss_pred CCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccc
Q 002163 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (958)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (958)
.++.++. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|.. +.+|+.|++++|.+.
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT------- 174 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS-------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCC-------
Confidence 9887755 678999999999999999864 4889999999997 8888753 468899999988775
Q ss_pred cCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhcc
Q 002163 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG 326 (958)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~ 326 (958)
..+ ..+++|+.|++++|.+..+|.. +++
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~l~~~--------------------------------------------~~~ 202 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLASLPTL--------------------------------------------PSE 202 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSCCCCC--------------------------------------------CTT
T ss_pred -----CCc---ccCCCCcEEECCCCCCCCCCCc--------------------------------------------cch
Confidence 112 4568899999998887665542 235
Q ss_pred ccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhc
Q 002163 327 IEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESF 406 (958)
Q Consensus 327 L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 406 (958)
|+.|++.++ .+.. ++ ..+++|++|++++|. ++.+ + ..+++|+.|+++++ .++.+ +. .+
T Consensus 203 L~~L~L~~N-~l~~-l~----~~~~~L~~L~Ls~N~-L~~l------p--~~l~~L~~L~Ls~N-~L~~l-----p~-~~ 260 (622)
T 3g06_A 203 LYKLWAYNN-RLTS-LP----ALPSGLKELIVSGNR-LTSL------P--VLPSELKELMVSGN-RLTSL-----PM-LP 260 (622)
T ss_dssp CCEEECCSS-CCSS-CC----CCCTTCCEEECCSSC-CSCC------C--CCCTTCCEEECCSS-CCSCC-----CC-CC
T ss_pred hhEEECcCC-cccc-cC----CCCCCCCEEEccCCc-cCcC------C--CCCCcCcEEECCCC-CCCcC-----Cc-cc
Confidence 555666552 2222 11 124667777777663 2211 1 23456666666662 44433 11 45
Q ss_pred cCccEEEEecCCCcccccchhhhhccCCceEEEeeccc
Q 002163 407 YKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (958)
Q Consensus 407 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 444 (958)
++|+.|++++| +++.+|. .+..+++|+.|++++++
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 66777777774 4566553 35667777777777654
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=4.8e-20 Score=210.70 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=108.9
Q ss_pred CCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc-----cCCcccCCCCCCCEEEccCCCCCC--cccc-CCCC-
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD--IAII-GNLK- 178 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~--l~~i-~~L~- 178 (958)
+++++|+++++.+.......+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 457777777776653333455778888999999988877 457778888899999999888764 2222 2344
Q ss_pred ---CccEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCCCccC-----hhhcCCCCCCCEEEeeCCccccccccc
Q 002163 179 ---KLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 179 ---~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p-----~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
+|++|++++|.+. .+|..+.++++|++|++++|. +.... ........+|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---
Confidence 6889999888877 457788888889999988887 54322 121233567888888888765111
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
.......++.+++|++|++++|.+
T Consensus 159 ----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 ----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 112345566677888888877654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=7.1e-18 Score=191.42 Aligned_cols=223 Identities=21% Similarity=0.263 Sum_probs=184.4
Q ss_pred ccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCC
Q 002163 83 DMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQ 159 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr 159 (958)
..+.++++|++++|.+..++.. + .+++|+.|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 4567999999999999888543 3 7999999999999887 5666778999999999999999998876 589999999
Q ss_pred EEEccCCCCCCc--cccCCCCCccEEEccCC-CCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeC
Q 002163 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (958)
Q Consensus 160 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (958)
+|++++|.+..+ ..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|++++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTT
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcC
Confidence 999999999865 57999999999999995 7778875 58999999999999998 999986 89999999999999
Q ss_pred CcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEeccccc
Q 002163 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (958)
|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 228 N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------------------- 261 (452)
T 3zyi_A 228 NHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNA----------------------------------- 261 (452)
T ss_dssp SCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTT-----------------------------------
T ss_pred CcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHH-----------------------------------
Confidence 9876 345778999999999999999876554432
Q ss_pred ChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 316 NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 316 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
+..+++|+.|+|+++.-..-... .+..+++|++|++++++
T Consensus 262 -----~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 -----FDGLASLVELNLAHNNLSSLPHD--LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----TTTCTTCCEEECCSSCCSCCCTT--SSTTCTTCCEEECCSSC
T ss_pred -----hcCCCCCCEEECCCCcCCccChH--HhccccCCCEEEccCCC
Confidence 11245677777776665432222 23678889999998886
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=191.37 Aligned_cols=230 Identities=21% Similarity=0.305 Sum_probs=188.7
Q ss_pred cccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-c
Q 002163 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-L 151 (958)
Q Consensus 75 ~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~ 151 (958)
.....+ ..++.++++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|+|++|.++.+|. .
T Consensus 54 ~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVP-DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCSSCC-SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CcCcCC-CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 333433 35668999999999999988743 3 7999999999999887 6777789999999999999999999876 6
Q ss_pred cCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCC-CCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCC
Q 002163 152 FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (958)
|..+++|++|++++|.+..+ ..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~ 208 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIK 208 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSS
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcc
Confidence 99999999999999999865 57999999999999996 6777775 68999999999999998 999996 899999
Q ss_pred CCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceE
Q 002163 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRV 307 (958)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~ 307 (958)
|++|++++|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 209 L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------- 250 (440)
T 3zyj_A 209 LDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA--------------------------- 250 (440)
T ss_dssp CCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS---------------------------
T ss_pred cCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh---------------------------
Confidence 999999999876 345678899999999999999876655432
Q ss_pred EEecccccChHHHHHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 308 LKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 308 l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
+..+++|+.|+|+++.-..-.... +..+++|+.|++++++
T Consensus 251 -------------~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 -------------FDNLQSLVEINLAHNNLTLLPHDL--FTPLHHLERIHLHHNP 290 (440)
T ss_dssp -------------STTCTTCCEEECTTSCCCCCCTTT--TSSCTTCCEEECCSSC
T ss_pred -------------hcCCCCCCEEECCCCCCCccChhH--hccccCCCEEEcCCCC
Confidence 112456777777776655422222 3678899999999887
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.8e-17 Score=172.34 Aligned_cols=193 Identities=22% Similarity=0.326 Sum_probs=151.6
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcc-cCCCCCCCEEEccC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDR 165 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~ 165 (958)
..+.++..++.++.+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 56788888888888877654 67888888888876 56666678888899999988888888764 57888899999998
Q ss_pred CCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccc
Q 002163 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
|.++.+ ..+..+++|++|++++|.++.+|. .++++++|++|++++|. +..+|.+.++++++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---
Confidence 888765 467888889999998888887764 47888889999998887 88888776788888999998888765
Q ss_pred cccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEEEEEec
Q 002163 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~ 293 (958)
......+..+++|+.|++++|.+..++... .+++|+.+++..+
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 233445778888889999888887777654 4567777766543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-19 Score=192.97 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=138.5
Q ss_pred CCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEcc
Q 002163 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLV 186 (958)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~ 186 (958)
+++|+.|++++|.+. .++...|.++++|++|++++|.+..++. +..+++|++|++++|.++.+. ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 456666666666655 3444455666666666666666665543 666666666666666644332 33666666666
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhh-cCCCCCCE
Q 002163 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL-KLLSHLTT 265 (958)
Q Consensus 187 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~ 265 (958)
+|.+..+|. ..+++|++|++++|. +..++...++.+++|++|++++|.+. ...+..+ +.+++|+.
T Consensus 108 ~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLEH 173 (317)
T ss_dssp SSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCCE
T ss_pred CCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhccCcCCE
Confidence 666665543 235666666666665 55555444566666666666666554 1122333 34566666
Q ss_pred EEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCcccccccc
Q 002163 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (958)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 345 (958)
|++++|.+..++....+++|+.+++..+.+ ..++..+..+++|++|+++++ .+......+
T Consensus 174 L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------AFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCC-------------------CEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred EECCCCcCcccccccccccCCEEECCCCcC-------------------CcchhhhcccCcccEEECcCC-cccchhhHh
Confidence 666666655554443444555554443332 111111234677888888774 444433333
Q ss_pred ccccccccceEeeccCCCeeEEecCCcc-cccccccccchhhcccccccc
Q 002163 346 DIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLIHLE 394 (958)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~ 394 (958)
..+++|+.|++++++-.. ... .....+++|+.|++.+++.++
T Consensus 234 --~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 234 --RFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp --CCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --hcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEECCCchhcc
Confidence 677888888888876320 111 234556777777777665554
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.3e-17 Score=174.43 Aligned_cols=195 Identities=22% Similarity=0.226 Sum_probs=167.5
Q ss_pred cCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
...+++.+++.++.++.+|..+. +.++.|++++|.+. .++...|.++++|++|++++|.+..+|.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 35678999999999999987764 78999999999987 56666789999999999999999988764 88999999999
Q ss_pred cCCCCCCc-cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccc
Q 002163 164 DRCALGDI-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (958)
Q Consensus 164 ~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (958)
++|.++.+ ..+..+++|++|++++|.++.+| ..+.++++|++|++++|. +..+|.+.+.++++|++|++++|.+.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-- 161 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-- 161 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC--
Confidence 99999876 67889999999999999999987 568999999999999998 89999887889999999999999876
Q ss_pred ccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc-ccccccEEEEEec
Q 002163 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIG 293 (958)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~ 293 (958)
......+..+++|+.|++++|.+..+|..+ ...+|+.+.+..+
T Consensus 162 ---------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 162 ---------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred ---------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 233445788999999999999999998877 5567777766543
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=6.2e-17 Score=172.97 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=165.8
Q ss_pred cCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
.++++++|++.++.+..++....+++|++|++++|.+. .++. |..+++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 35689999999999988876558899999999999887 4555 799999999999999999886 6899999999999
Q ss_pred cCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
++|.++.++.++.+++|++|++++|.+..+|. ++++++|++|++++|. +..++. ++++++|++|++++|.+.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99999988779999999999999999999885 9999999999999997 888886 899999999999999875
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCc
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDE 295 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 295 (958)
....+..+++|+.|++++|.+..++.-..+++|+.+++..+.+
T Consensus 187 ---------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 ---------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ---------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2234888999999999999988777544778888888876553
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1e-16 Score=168.17 Aligned_cols=188 Identities=23% Similarity=0.371 Sum_probs=161.5
Q ss_pred cCcccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc
Q 002163 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (958)
Q Consensus 73 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 150 (958)
+.....++ ...+.++++|++.+|.+..++.. + .+++|++|++++|.+. .++..+|.++++|++|++++|.+..+|.
T Consensus 25 ~~~l~~ip-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 25 SKKLTAIP-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp TSCCSSCC-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCccC-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 33444433 34567899999999999988763 3 7999999999999887 7888889999999999999999998875
Q ss_pred -ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCC
Q 002163 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (958)
Q Consensus 151 -~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~ 226 (958)
.+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|...+.+++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLT 181 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCC
Confidence 578999999999999999865 5689999999999999999999865 7999999999999998 8899887789999
Q ss_pred CCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCc
Q 002163 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (958)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (958)
+|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 182 ~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 182 ELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCee
Confidence 9999999999876 233456788999999999998754
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=6.4e-17 Score=173.44 Aligned_cols=235 Identities=20% Similarity=0.209 Sum_probs=170.8
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC---CcccCCCCCCCEEEccC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDR 165 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~ 165 (958)
++++..++.++.+|..+. ++++.|++++|.+. .++..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 356666677777776553 68888888888877 67777788888899999888888754 56677788889999988
Q ss_pred CCCCCc-cccCCCCCccEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccc
Q 002163 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
|.+..+ ..+..+++|++|++++|.+..+|. .+.++++|++|++++|. +...+.+.++++++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence 887765 568888888999988888887764 68888888899888887 666655557888888888888887641
Q ss_pred cccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCc-c-ccccccEEEEEecCccc----cccccCCceEEEecccc--
Q 002163 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG-L-FSKKLERYKIFIGDEWD----WSGNYKNKRVLKLKLYT-- 314 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~----~~~~~~~l~~l~l~~~~-- 314 (958)
...+..++.+++|+.|++++|.+..++.. + .+++|+.+++..+.+-. ......+++.+.+..+.
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 12345677888888888888887766443 3 66788888887655422 33445677777776543
Q ss_pred cChHHHHHhh-ccccEEEccccC
Q 002163 315 SNVDEVIMQL-KGIEELYLDEVP 336 (958)
Q Consensus 315 ~~l~~~~~~l-~~L~~L~L~~~~ 336 (958)
...+..+..+ ++|++|+++++.
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCHHHHHhhhccCCEEEccCCC
Confidence 1112223334 489999998843
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.8e-16 Score=183.96 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=107.5
Q ss_pred CCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccC
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVD 187 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~ 187 (958)
.++++|++++|.+. .+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 35888999888877 7776553 788999999999888887 57889999999998887655 788899999999
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEE
Q 002163 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (958)
Q Consensus 188 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (958)
|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.+. ..+ ....+|+.|+
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~------------~l~---~~~~~L~~L~ 167 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA------------SLP---ALPSELCKLW 167 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS------------CCC---CCCTTCCEEE
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC------------CcC---CccCCCCEEE
Confidence 98888886 67888999999887 8888864 478888988888765 011 1345788888
Q ss_pred eeccCCccCC
Q 002163 268 IQICDAMILP 277 (958)
Q Consensus 268 l~~~~~~~~~ 277 (958)
+++|.+..+|
T Consensus 168 L~~N~l~~l~ 177 (622)
T 3g06_A 168 AYNNQLTSLP 177 (622)
T ss_dssp CCSSCCSCCC
T ss_pred CCCCCCCCCc
Confidence 8877765554
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=2.9e-19 Score=204.18 Aligned_cols=181 Identities=20% Similarity=0.254 Sum_probs=98.4
Q ss_pred CCCcCEEEeecCCCee-----cCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCC----CCcEEEeeCccCc-----cCC
Q 002163 85 LKNCPTIFLHDCKHWE-----VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMS----NLRGLALSNMQFL-----SLP 149 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~i~-----~lp 149 (958)
.+++++|++.+|.+.. ++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.+. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3456666666666542 22222 4566777777666554222333344444 5677777766665 345
Q ss_pred cccCCCCCCCEEEccCCCCCC--ccc-----cCCCCCccEEEccCCCCCC-----CchhhcCCCCCCEEeccCCCCCCcc
Q 002163 150 SLFHLPLNLQTLCLDRCALGD--IAI-----IGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVI 217 (958)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~--l~~-----i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~ 217 (958)
..+..+++|++|++++|.++. +.. .....+|++|++++|.++. ++..+..+++|++|++++|. +...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH
Confidence 666666677777777666542 111 1224566777776666653 34455666667777776665 4432
Q ss_pred ChhhcC-----CCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 218 PPNLLS-----GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 218 p~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
....+. ..++|++|++++|.+...+ ....+..+..+++|++|++++|.+
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTH-------HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHH-------HHHHHHHHHhCCCccEEeccCCcC
Confidence 221122 2456667776666554100 011244455666666666666654
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=5.5e-17 Score=166.82 Aligned_cols=198 Identities=14% Similarity=0.208 Sum_probs=167.6
Q ss_pred ccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCc-CCCCcChhhhcCCCCCcEEEeeC-ccCccCC-c
Q 002163 76 QIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRD-HSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-S 150 (958)
Q Consensus 76 ~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~ 150 (958)
...++. .+.++++|++.+|.+..++.. + .+++|++|++++|. +. .++...|.++++|++|++++ |.++.+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444444 667999999999999999873 3 79999999999997 55 78877889999999999998 9999887 4
Q ss_pred ccCCCCCCCEEEccCCCCCCccccCCCCCcc---EEEccCC-CCCCCch-hhcCCCCCC-EEeccCCCCCCccChhhcCC
Q 002163 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLE---ILSLVDS-NIEQLPE-EMAQLTQLR-LFDLSGCSKLKVIPPNLLSG 224 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~---~L~l~~~-~l~~lp~-~i~~L~~L~-~L~l~~~~~l~~~p~~~i~~ 224 (958)
.|..+++|++|++++|.++.++.++.+.+|+ +|++++| .++.+|. .+.++++|+ +|++++|. +..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 7899999999999999998876688888888 9999999 9999885 489999999 99999998 88999875555
Q ss_pred CCCCCEEEeeCCc-ccccccccccCCCcCChhhhcCC-CCCCEEEeeccCCccCCCccccccccEEEE
Q 002163 225 LSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (958)
Q Consensus 225 L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 290 (958)
++|++|++++|. +. ......++.+ ++|+.|+++++.+..+|.. .+++|+.+.+
T Consensus 179 -~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999999984 65 2234567888 9999999999999888876 5667777654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.1e-16 Score=169.16 Aligned_cols=198 Identities=23% Similarity=0.305 Sum_probs=161.9
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCCCccccCCCCCccEEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (958)
.+++++++++.++.+. .+|..++ +.+++|++++|.+..+ |..|..+++|++|++++|.++.+...+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5678999999998887 6886653 6899999999999977 468999999999999999999876668999999999
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCC
Q 002163 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (958)
Q Consensus 185 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (958)
+++|.++.+|..+..+++|++|++++|. ++.+|.+.++++++|++|++++|.+. ......+..+++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCCC
Confidence 9999999999999999999999999998 99998777899999999999999876 23445678899999
Q ss_pred EEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCccccccc
Q 002163 265 TLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYD 344 (958)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 344 (958)
.|++++|.+..++..+ +..+++|+.|+++++ .++.....
T Consensus 152 ~L~L~~N~l~~l~~~~----------------------------------------~~~l~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL----------------------------------------LNGLENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp EEECTTSCCSCCCTTT----------------------------------------TTTCTTCCEEECCSS-CCCCCCTT
T ss_pred EEECCCCcCCccCHHH----------------------------------------hcCcCCCCEEECCCC-cCCccChh
Confidence 9999999988777653 112456777777663 33433333
Q ss_pred cccccccccceEeeccCC
Q 002163 345 LDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 345 l~~~~l~~L~~L~l~~~~ 362 (958)
+ ...++|+.|++.+++
T Consensus 191 ~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 191 F--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp T--TTTCCCSEEECCSCC
T ss_pred h--cccccCCeEEeCCCC
Confidence 3 455678888888776
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=9.4e-17 Score=169.21 Aligned_cols=172 Identities=18% Similarity=0.310 Sum_probs=110.9
Q ss_pred CCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--c
Q 002163 96 CKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--A 172 (958)
Q Consensus 96 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~ 172 (958)
..+.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..++. .+.++++|++|++++|.++.+ .
T Consensus 17 ~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 17 LNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 34445555443 46777777777665 4555556777777777777777776654 677777777777777777643 5
Q ss_pred ccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCCcccccccccccCC
Q 002163 173 IIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (958)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (958)
.++++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~-------- 164 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI-------- 164 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE--------
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC--------
Confidence 67777777777777777776654 57777777777777776 555 4544 67777777777777765411
Q ss_pred CcCChhhhcCCCCCC-EEEeeccCCccCCCc
Q 002163 250 SNASLQELKLLSHLT-TLEIQICDAMILPKG 279 (958)
Q Consensus 250 ~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 279 (958)
.......+..++.|. .|+++++.+..++..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcc
Confidence 011233344444444 677777766555443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=9e-18 Score=180.23 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=92.5
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCC-CCcChhhh------cCCCCCcEEEeeCccCc-cCCccc--CCCC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHS-IKIPNHVF------AGMSNLRGLALSNMQFL-SLPSLF--HLPL 156 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~Lr~L~L~~~~i~-~lp~~i--~~l~ 156 (958)
+++.+++.+|.+ .+|..+. ..++.|++++|.+. ..++..++ .++++|++|++++|.+. .+|..+ +.++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 344555555555 4443221 11566666655542 22333221 14666666666666665 455554 6666
Q ss_pred CCCEEEccCCCCCCc-cccCCC-----CCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCc---cChhhc--CC
Q 002163 157 NLQTLCLDRCALGDI-AIIGNL-----KKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKV---IPPNLL--SG 224 (958)
Q Consensus 157 ~Lr~L~L~~~~l~~l-~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~---~p~~~i--~~ 224 (958)
+|++|++++|.++.. ..++.+ ++|++|++++|.+..+| ..++++++|++|++++|. +.. +|.. + ++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISA-LCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHH-SCTTS
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC-cCcchHHHHH-HHhcc
Confidence 666666666665543 334444 66666666666666554 456666666666666665 322 1222 2 56
Q ss_pred CCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCcc
Q 002163 225 LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (958)
Q Consensus 225 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (958)
+++|++|++++|.+.... .....-+..+++|+.|++++|.+..
T Consensus 200 l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCc
Confidence 666666666666543000 0001223455666666666665544
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=8.2e-17 Score=169.67 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=165.6
Q ss_pred ccCCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCC
Q 002163 83 DMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQ 159 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr 159 (958)
..+.++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 456789999999999998876 33 7899999999999887 677777899999999999999999776 6799999999
Q ss_pred EEEccCCCCCCc--cccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCC----EE
Q 002163 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE----DL 231 (958)
Q Consensus 160 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L 231 (958)
+|++++|.+..+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 999999998876 469999999999999999986 78999999999999999998 8888866577677776 89
Q ss_pred EeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEEEEEecC
Q 002163 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (958)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 294 (958)
++++|.+.. .+.......+|+.|++++|.+..++..+ .+++|+.+++..+.
T Consensus 183 ~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 183 DLSLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ecCCCcccc------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 999988751 1222233347999999999998888765 57788888776544
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.2e-16 Score=163.47 Aligned_cols=175 Identities=21% Similarity=0.303 Sum_probs=151.2
Q ss_pred CcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccC
Q 002163 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDR 165 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~ 165 (958)
..++++..++.+..+|..+. +.++.|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45788899999988888765 78999999999987 5666668999999999999999997754 689999999999999
Q ss_pred CCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccc
Q 002163 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
|.++.+ ..++.+++|++|++++|.++.+|.. ++++++|++|++++|. +..+|.+.++++++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 999865 5688999999999999999998865 6899999999999998 99999876899999999999999876
Q ss_pred cccccCCCcCChhhhcCCCCCCEEEeeccCCcc
Q 002163 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (958)
......+..+++|+.|++++|....
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 3344578889999999999987543
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.9e-17 Score=185.28 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=57.7
Q ss_pred CccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCC
Q 002163 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS 188 (958)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~ 188 (958)
+|++|++++|.+. .+++..|..+++|++|+|++|.+...++ ++.+++|++|++++|.++.+. ..++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCC
Confidence 4555555555444 2333334555555555555555543333 455555555555555433221 1245555555555
Q ss_pred CCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 189 NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 189 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
.+..+|. ..+++|++|++++|. +..+++..++++++|++|++++|.+.
T Consensus 110 ~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 110 NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC
Confidence 5554442 234445555555554 44443322444555555555554443
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.9e-16 Score=165.40 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=161.2
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcc
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL 151 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~ 151 (958)
.+.....++.....+++++|++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+..+|.
T Consensus 49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG-
T ss_pred eCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh-
Confidence 34444444445567899999999999988887558999999999999977 454 37899999999999999999875
Q ss_pred cCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEE
Q 002163 152 FHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (958)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 231 (958)
+..+++|++|++++|.++.+..++.+++|++|++++|.++.+|. +.++++|++|++++|. +..++. +..+++|++|
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEE
Confidence 99999999999999999988779999999999999999999986 9999999999999998 888886 8999999999
Q ss_pred EeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
++++|.+. ....+..+++|+.|++++|.+...|.
T Consensus 201 ~L~~N~l~-------------~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 201 HLKNNQIS-------------DVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECTTSCCC-------------BCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EccCCccC-------------ccccccCCCCCCEEEccCCeeecCCe
Confidence 99999876 12258999999999999998766554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=8.9e-16 Score=161.00 Aligned_cols=176 Identities=23% Similarity=0.317 Sum_probs=149.8
Q ss_pred cCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEE
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLC 162 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~ 162 (958)
..++++.+++.++.+..++....+++|++|++++|.+.. ++ .+..+++|++|++++|.+..+|. .++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 457899999999998887766688999999999998763 43 47899999999999999998765 478999999999
Q ss_pred ccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 163 LDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 163 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..+|...++++++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 999998865 4489999999999999999988754 6899999999999998 88888877789999999999999876
Q ss_pred ccccccccCCCcCChhhhcCCCCCCEEEeeccCCc
Q 002163 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (958)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (958)
...+..++.+++|+.|++++|...
T Consensus 195 -----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 -----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 334456788999999999988643
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=5e-16 Score=164.34 Aligned_cols=173 Identities=24% Similarity=0.350 Sum_probs=150.3
Q ss_pred cCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
..+++++|++.+|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 35689999999999988876557899999999999887 4554 7899999999999999988765 899999999999
Q ss_pred cCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccc
Q 002163 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (958)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (958)
++|.++.++.++.+++|++|++++|.++.+ ..++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 999999888899999999999999999988 479999999999999998 888876 899999999999999875
Q ss_pred ccccCCCcCChhhhcCCCCCCEEEeeccCCccCC
Q 002163 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (958)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (958)
....+..+++|+.|++++|.+...+
T Consensus 192 ---------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ---------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ---------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ---------CChhhccCCCCCEEECcCCcccCCc
Confidence 2346889999999999988765443
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=8.2e-18 Score=180.98 Aligned_cols=236 Identities=14% Similarity=0.123 Sum_probs=170.5
Q ss_pred CCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEE
Q 002163 85 LKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~ 162 (958)
.+++++|++++|.+..++. .+ .+++|++|++++|.+.. +++ |..+++|++|++++|.+..+|. .++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 3478999999998887763 22 78899999999988763 333 7889999999999998887663 37899999
Q ss_pred ccCCCCCCccccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhc-CCCCCCCEEEeeCCcccc
Q 002163 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLL-SGLSRLEDLYMGNTSVKW 240 (958)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i-~~L~~L~~L~l~~~~~~~ 240 (958)
+++|.++.+.. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+..
T Consensus 106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99998876521 236789999999998887754 78888999999999887 777654334 478899999998887651
Q ss_pred cccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc-ccccccEEEEEecCccccccccCCceEEEecccccChHH
Q 002163 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDE 319 (958)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~ 319 (958)
......+++|+.|++++|.+..++..+ .+++|+.+++..+.+- .++.
T Consensus 184 -------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-------------------~l~~ 231 (317)
T 3o53_A 184 -------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-------------------LIEK 231 (317)
T ss_dssp -------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-------------------EECT
T ss_pred -------------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-------------------chhh
Confidence 133345788999999998888877766 6678888877655431 1111
Q ss_pred HHHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 320 VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 320 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
.+..+++|+.|+++++.-..+.++.+ ...+++|+.|++.++.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEECCCch
Confidence 22336788888888854432333222 2667788888877554
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.1e-17 Score=175.99 Aligned_cols=202 Identities=14% Similarity=0.113 Sum_probs=149.3
Q ss_pred CCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCc--cCCcccC-------CCCCCCEEEccCCCCCC--cccc-
Q 002163 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFH-------LPLNLQTLCLDRCALGD--IAII- 174 (958)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~Lr~L~L~~~~l~~--l~~i- 174 (958)
.++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++. +..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 46788888888888 678766544 899999999886 4676665 79999999999999873 3554
Q ss_pred -CCCCCccEEEccCCCCCCCchhhcCC-----CCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccC
Q 002163 175 -GNLKKLEILSLVDSNIEQLPEEMAQL-----TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (958)
Q Consensus 175 -~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (958)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..++.+.++++++|++|++++|.+...
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------- 188 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE------- 188 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH-------
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc-------
Confidence 89999999999999999889888887 999999999998 8888866699999999999999975410
Q ss_pred CCcCChhhh--cCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChH-HHHHhhc
Q 002163 249 RSNASLQEL--KLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD-EVIMQLK 325 (958)
Q Consensus 249 ~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~-~~~~~l~ 325 (958)
...+..+ +.+++|++|++++|.+..++ .++ ..+..++
T Consensus 189 --~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------------------~~~~~~~~~l~ 228 (312)
T 1wwl_A 189 --RGLISALCPLKFPTLQVLALRNAGMETPS--------------------------------------GVCSALAAARV 228 (312)
T ss_dssp --HHHHHHSCTTSCTTCCEEECTTSCCCCHH--------------------------------------HHHHHHHHTTC
T ss_pred --hHHHHHHHhccCCCCCEEECCCCcCcchH--------------------------------------HHHHHHHhcCC
Confidence 0123344 88899999999988753221 111 1334467
Q ss_pred cccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 326 GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
+|++|+++++ .+....+......+++|++|+++++.
T Consensus 229 ~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 229 QLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc
Confidence 8888888774 33332221122445677777776664
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.6e-16 Score=161.84 Aligned_cols=167 Identities=16% Similarity=0.247 Sum_probs=122.3
Q ss_pred cCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCcc-CccCCc-ccCCCCCCCEEEccC-CCCCCc
Q 002163 95 DCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSLPS-LFHLPLNLQTLCLDR-CALGDI 171 (958)
Q Consensus 95 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~l~~Lr~L~L~~-~~l~~l 171 (958)
...+.++|. + .+++++|++++|.+. .++...|.++++|++|++++|. ++.+|. .|.++++|++|++++ |.++.+
T Consensus 20 c~~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334666776 3 347888888888876 6676677888888888888886 887765 688888888888888 778754
Q ss_pred --cccCCCCCccEEEccCCCCCCCchhhcCCCCCC---EEeccCCCCCCccChhhcCCCCCCC-EEEeeCCccccccccc
Q 002163 172 --AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR---LFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGNTSVKWEFEGL 245 (958)
Q Consensus 172 --~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~~~~~~~~~~~ 245 (958)
..+.++++|++|++++|.++.+|. ++.+.+|+ +|++++|..+..+|.+.++++++|+ +|++++|.+..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----- 170 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----- 170 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----
Confidence 467788888888888888888886 77777777 8888888338888877678888888 88888776541
Q ss_pred ccCCCcCChhhhcCCCCCCEEEeeccC-CccCC
Q 002163 246 NVGRSNASLQELKLLSHLTTLEIQICD-AMILP 277 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~ 277 (958)
.....+.. ++|+.|++++|. +..++
T Consensus 171 ------i~~~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 171 ------VQGYAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ------ECTTTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ------cCHhhcCC-CCCCEEEcCCCCCcccCC
Confidence 11122223 567777777663 54443
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=4.3e-17 Score=185.73 Aligned_cols=236 Identities=14% Similarity=0.154 Sum_probs=182.0
Q ss_pred CCCcCEEEeecCCCeecCC-CC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEE
Q 002163 85 LKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~ 162 (958)
++++++|++++|.+..++. .+ .+++|++|++++|.+....+ |..+++|++|++++|.+..+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3489999999999988764 33 79999999999999874333 79999999999999999887743 8999999
Q ss_pred ccCCCCCCccccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcC-CCCCCCEEEeeCCcccc
Q 002163 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS-GLSRLEDLYMGNTSVKW 240 (958)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~-~L~~L~~L~l~~~~~~~ 240 (958)
+++|.+..+.. ..+++|++|++++|.+..+ |..++++++|++|++++|. +..++...+. .+++|++|++++|.+.
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~- 182 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY- 182 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccc-
Confidence 99999987632 3578999999999999987 5579999999999999998 7765433354 8999999999999876
Q ss_pred cccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHH
Q 002163 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (958)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~ 320 (958)
.......+++|+.|++++|.+..+|+.+
T Consensus 183 ------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------------------- 210 (487)
T 3oja_A 183 ------------DVKGQVVFAKLKTLDLSSNKLAFMGPEF---------------------------------------- 210 (487)
T ss_dssp ------------EEECCCCCTTCCEEECCSSCCCEECGGG----------------------------------------
T ss_pred ------------cccccccCCCCCEEECCCCCCCCCCHhH----------------------------------------
Confidence 1234456899999999999876665432
Q ss_pred HHhhccccEEEccccCCccccccccccccccccceEeeccCCCeeEEecCCcc-cccccccccchhhccccc
Q 002163 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLI 391 (958)
Q Consensus 321 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~ 391 (958)
..+++|+.|+++++ .+...++.+ ..+++|+.|++++++.. +... .....++.|+.+.+..+.
T Consensus 211 -~~l~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~l~~N~l~-----c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 211 -QSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp -GGGTTCSEEECTTS-CCCEECTTC--CCCTTCCEEECTTCCBC-----HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCCCccEEEecCC-cCcccchhh--ccCCCCCEEEcCCCCCc-----CcchHHHHHhCCCCcEEeccccc
Confidence 23568888888884 444444443 77899999999998632 0111 234567778888776433
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.2e-15 Score=159.95 Aligned_cols=173 Identities=20% Similarity=0.312 Sum_probs=148.6
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEIL 183 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 183 (958)
.+++|+.|++.++.+. .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++.+ ..++++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5789999999998876 4443 688999999999999999875 799999999999999999875 458999999999
Q ss_pred EccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCC
Q 002163 184 SLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (958)
Q Consensus 184 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 262 (958)
++++|.++.+|.. ++++++|++|++++|. +..+|.+.++++++|++|++++|.+. ......++.+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-----------SLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC-----------ccCHHHhcCCcc
Confidence 9999999988754 7999999999999997 88998887799999999999999876 234455789999
Q ss_pred CCEEEeeccCCccCCCcc--ccccccEEEEEecC
Q 002163 263 LTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (958)
Q Consensus 263 L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 294 (958)
|+.|++++|.+..++... .+++|+.+++..+.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 999999999988877754 67788888765443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.9e-15 Score=153.33 Aligned_cols=165 Identities=20% Similarity=0.336 Sum_probs=142.5
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCCC-C-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 149 (958)
.+......+ ...+..+++|++.+|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|
T Consensus 22 ~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 22 QGKSLDSVP-SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TTCCCSSCC-SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCCccccC-CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccC
Confidence 333444443 24567899999999999887764 3 7899999999999987 566677899999999999999999887
Q ss_pred c-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCC
Q 002163 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (958)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (958)
. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|. .++++++|++|++++|. +..+|.+.+.++
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCC
Confidence 4 679999999999999999876 447899999999999999999986 68999999999999998 889988778999
Q ss_pred CCCCEEEeeCCccc
Q 002163 226 SRLEDLYMGNTSVK 239 (958)
Q Consensus 226 ~~L~~L~l~~~~~~ 239 (958)
++|++|++++|.+.
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999999999865
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=2.1e-15 Score=159.53 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=148.8
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEc
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l 185 (958)
.+++|+.|++++|.+. .++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++.++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 5789999999999876 4553 6889999999999999999887 9999999999999999999988999999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 186 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
++|.+..++ .+..+++|++|++++|. +..++. ++++++|++|++++|.+. ....+..+++|+.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------------~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DIVPLAGLTKLQN 182 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------------CCGGGTTCTTCCE
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------------cchhhcCCCccCE
Confidence 999999985 79999999999999998 888853 899999999999999876 1223899999999
Q ss_pred EEeeccCCccCCCccccccccEEEEEecCc
Q 002163 266 LEIQICDAMILPKGLFSKKLERYKIFIGDE 295 (958)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 295 (958)
|++++|.+..++.-..+++|+.+++..+.+
T Consensus 183 L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 183 LYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred EECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 999999998887644778899998876553
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=8.4e-15 Score=148.91 Aligned_cols=149 Identities=26% Similarity=0.362 Sum_probs=129.0
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRC 166 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~ 166 (958)
.+.++..++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777888888887664 89999999999988 4555668999999999999999998875 5689999999999999
Q ss_pred CCCCc--cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
.++.+ ..+..+++|++|++++|.++.+|..+.++++|++|++++|. +..+|.+.+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 98876 44789999999999999999999999999999999999997 88888777889999999999888754
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=5.4e-16 Score=166.22 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=57.4
Q ss_pred CCccEEEcCCCcCCCCcChhhh-cCCCCCcEEEeeCccCccC-C----cccCCCCCCCEEEccCCCCCCc--cccCCCCC
Q 002163 108 PQLEFFCMSPRDHSIKIPNHVF-AGMSNLRGLALSNMQFLSL-P----SLFHLPLNLQTLCLDRCALGDI--AIIGNLKK 179 (958)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~l-p----~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~ 179 (958)
++|+.|++++|.+....+..++ ..+++|++|++++|.+... | ..+..+++|++|++++|.+..+ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3455555555544433333322 4455555555555544421 1 1223444555555555554432 34445555
Q ss_pred ccEEEccCCCCCC---Cch--hhcCCCCCCEEeccCCCCCCccChh---hcCCCCCCCEEEeeCCcc
Q 002163 180 LEILSLVDSNIEQ---LPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 180 L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~~ 238 (958)
|++|++++|.+.. +|. .++++++|++|++++|. ++.++.. .++++++|++|++++|.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 5555555554332 221 12344555555555554 4433321 123445555555555444
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=5.2e-15 Score=171.69 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=154.4
Q ss_pred ccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEE
Q 002163 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~ 162 (958)
..+..++.|++.+|.+..++....+++|+.|++++|.+. .++. |..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 346789999999999988886558999999999999887 4554 789999999999999999887 699999999999
Q ss_pred ccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccc
Q 002163 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (958)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (958)
|++|.+..++.++.+++|+.|+|++|.+..+ ..++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999999998899999999999999999988 589999999999999998 888876 899999999999999876
Q ss_pred cccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 ----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23578999999999999988755543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.5e-14 Score=157.67 Aligned_cols=194 Identities=18% Similarity=0.185 Sum_probs=137.1
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcE-EEeeCccCccC
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-LALSNMQFLSL 148 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~i~~l 148 (958)
.+.+...++ .+++.++++|++++|.++.++... .+++|++|++++|.+...++...|.++++++. +.+.+|.+..+
T Consensus 17 ~~~~Lt~iP-~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 17 QESKVTEIP-SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp ESTTCCSCC-TTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred cCCCCCccC-cCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 444444444 245678888888888888887643 68888888888888766677777888877664 56667788877
Q ss_pred C-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCC-CCCCCch-hhcCC-CCCCEEeccCCCCCCccChhhc
Q 002163 149 P-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQL-TQLRLFDLSGCSKLKVIPPNLL 222 (958)
Q Consensus 149 p-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L-~~L~~L~l~~~~~l~~~p~~~i 222 (958)
| ..|..+++|++|++++|.+..+ ..+....++.+|++.++ .+..+|. .+..+ ..+++|++++|. ++.+|.+ +
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~ 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-A 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-S
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-h
Confidence 4 5678888888888888887765 34455667778888664 6777764 34555 357888888887 8888877 4
Q ss_pred CCCCCCCEEEeeC-CcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCc
Q 002163 223 SGLSRLEDLYMGN-TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (958)
Q Consensus 223 ~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (958)
....+|++|.+.+ +.+. ......++.+++|+.|++++|.+..+|.+
T Consensus 174 f~~~~L~~l~l~~~n~l~-----------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLE-----------ELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp STTEEEEEEECTTCTTCC-----------CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred ccccchhHHhhccCCccc-----------CCCHHHhccCcccchhhcCCCCcCccChh
Confidence 5566788888765 3333 12234567788888888888887777664
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7.7e-15 Score=148.05 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=116.7
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (958)
+.++..++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|+|++|.+..+ |..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 466777777777777654 67888888888876 56666678888888888888888866 6788888888888888888
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8765 3467888888888888888877 4568888888888888887 77787766778888888888887654
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.5e-15 Score=165.18 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=106.2
Q ss_pred ccEEEcCCCcCCCCcChhhhcCC--CCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC--c-cccCCCCCccEEE
Q 002163 110 LEFFCMSPRDHSIKIPNHVFAGM--SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--I-AIIGNLKKLEILS 184 (958)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l-~~i~~L~~L~~L~ 184 (958)
++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 344444444332 2334444 56666666666665555445566666666666666542 2 4455666666666
Q ss_pred ccCCCCC-CCchhhcCCCCCCEEeccCCCCCCc--cChhhcCCCCCCCEEEeeCC-cccccccccccCCCcCChhhhcCC
Q 002163 185 LVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNT-SVKWEFEGLNVGRSNASLQELKLL 260 (958)
Q Consensus 185 l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l 260 (958)
+++|.+. ..|..++++++|++|++++|..+.. ++.. ++++++|++|++++| .+.. ...+..++.+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l 193 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----------KHVQVAVAHV 193 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----------HHHHHHHHHS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhc
Confidence 6666555 4455666666666666666633442 3332 455666666666665 4430 0123345556
Q ss_pred C-CCCEEEeeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCcc
Q 002163 261 S-HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIK 339 (958)
Q Consensus 261 ~-~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 339 (958)
+ +|++|++++|... + .+..++..+..+++|++|+++++..++
T Consensus 194 ~~~L~~L~l~~~~~~-~------------------------------------~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 194 SETITQLNLSGYRKN-L------------------------------------QKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CTTCCEEECCSCGGG-S------------------------------------CHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred ccCCCEEEeCCCccc-C------------------------------------CHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 6 6666666555210 0 001233344456667777776654333
Q ss_pred c-cccccccccccccceEeeccCC
Q 002163 340 N-VLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 340 ~-~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
+ .++.+ ..+++|++|++++|.
T Consensus 237 ~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 237 NDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGGGG--GGCTTCCEEECTTCT
T ss_pred HHHHHHH--hCCCCCCEeeCCCCC
Confidence 2 23333 566777777777664
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=9.3e-15 Score=146.50 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=134.8
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (958)
+.+...++.+..+|..+ .++++.|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666666677777554 468999999999887 6777778899999999999999998876 46889999999999999
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (958)
++.+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|. +..+|...++++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 8865 4478999999999999999988764 7889999999999997 88888877888999999999888653
Q ss_pred cccCCCcCChhhhcCCCCCCEEEeeccCCc-cCCC
Q 002163 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPK 278 (958)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~ 278 (958)
+.+++|+.|+++.+... .+|.
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred -------------cCCCCHHHHHHHHHhCCceeec
Confidence 23456777777766543 4443
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=146.46 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=116.4
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (958)
++++++++.+..+|..+ .+.++.|++++|.+....+..+|.++++|++|++++|.++.++. .|..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57888888888887655 34678888888887743355667888888888888888887765 78888888888888888
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
++.+ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|. +..++++.+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8765 4588888888888888888876 5678888888888888887 77775555788888888888887654
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=144.03 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=103.5
Q ss_pred CCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCcc-CCcccCCCCCCCEEEc
Q 002163 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTLCL 163 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~Lr~L~L 163 (958)
.++++++++.+|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4577888888887777764336777777777777543 232 35777777777777777764 5667777777777777
Q ss_pred cCCCCCC--ccccCCCCCccEEEccCCC-CCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 164 DRCALGD--IAIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 164 ~~~~l~~--l~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
++|.++. +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 7777765 4667777777777777776 77776 57777777777777776 666662 677777777777776543
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=5.6e-15 Score=153.58 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=122.0
Q ss_pred cCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCC
Q 002163 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (958)
+..+.+..+.+.+++....+++|++|++++|.+. .++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3344444555555553335677888888877765 455 26778888888888888887776 7888888888888888
Q ss_pred CCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccccc
Q 002163 168 LGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (958)
Q Consensus 168 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (958)
++.++.+.. .+|++|++++|.++.+| .++++++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~-------- 163 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT-------- 163 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC--------
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc--------
Confidence 877655555 88888888888888776 58888888888888887 777763 778888888888888765
Q ss_pred CCCcCChhhhcCCCCCCEEEeeccCCccCC
Q 002163 248 GRSNASLQELKLLSHLTTLEIQICDAMILP 277 (958)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (958)
+ ...++.+++|+.|++++|.+...|
T Consensus 164 ---~--~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ---N--TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---B--CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ---c--hHHhccCCCCCEEeCCCCcccCCc
Confidence 1 156777888888888877654443
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.1e-14 Score=144.50 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=125.3
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC--ccccCCCCCccEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEIL 183 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~~L~~L~~L 183 (958)
.+++|+.|++++|.+. .++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4678999999998887 666 2 688999999999999877665 68899999999999999885 5889999999999
Q ss_pred EccCCCCCC-CchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCC
Q 002163 184 SLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (958)
Q Consensus 184 ~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 262 (958)
++++|.+.. .|..++++++|++|++++|..+..+|. ++++++|++|++++|.+. ....+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 999998885 678899999999999999976788874 889999999999998775 2337888899
Q ss_pred CCEEEeeccCCc
Q 002163 263 LTTLEIQICDAM 274 (958)
Q Consensus 263 L~~L~l~~~~~~ 274 (958)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999988753
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=2e-14 Score=156.81 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=79.5
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCC-c--cccCCCCCccE-EEc
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD-I--AIIGNLKKLEI-LSL 185 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~-l--~~i~~L~~L~~-L~l 185 (958)
++++.+++.+. .+|.++ .+++++|+|++|.|+.+|. +|.++++|++|+|++|.+.. + ..|.++++|+. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666665 667654 2467788888888887775 57778888888888877543 3 45677777654 444
Q ss_pred cCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeC
Q 002163 186 VDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (958)
Q Consensus 186 ~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (958)
.+|++..+| ..++.+++|++|++++|. +..+|...+....++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 556777664 456777777777777776 6666654444555566666654
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=155.50 Aligned_cols=193 Identities=15% Similarity=0.058 Sum_probs=149.1
Q ss_pred CCcCEEEeecCCCeec-CCC---CCCCCccEEEcCCCcCCCCcC---hhhhcCCCCCcEEEeeCccCccCC-cccCCCCC
Q 002163 86 KNCPTIFLHDCKHWEV-PEG---LEYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLN 157 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~ 157 (958)
.++++|++.+|.+... +.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4599999999988643 333 468899999999998875433 233457999999999999998765 68899999
Q ss_pred CCEEEccCCCCCC---c---cccCCCCCccEEEccCCCCCCCchh----hcCCCCCCEEeccCCCCCCcc-ChhhcCCC-
Q 002163 158 LQTLCLDRCALGD---I---AIIGNLKKLEILSLVDSNIEQLPEE----MAQLTQLRLFDLSGCSKLKVI-PPNLLSGL- 225 (958)
Q Consensus 158 Lr~L~L~~~~l~~---l---~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~-p~~~i~~L- 225 (958)
|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. ++++++|++|++++|. +..+ |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 9999999998652 2 3347899999999999999887753 5788999999999998 7766 655 5666
Q ss_pred --CCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCccccccccEEEEEecC
Q 002163 226 --SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (958)
Q Consensus 226 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (958)
++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|....+++|+.+++..+.
T Consensus 249 ~~~~L~~L~Ls~N~l~------------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE------------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCC------------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCC------------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 69999999999875 1233332 7899999999998877654466777777665443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.9e-14 Score=167.00 Aligned_cols=169 Identities=22% Similarity=0.269 Sum_probs=147.4
Q ss_pred CCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEE
Q 002163 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (958)
Q Consensus 105 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (958)
..+++|+.|++++|.+. .++. |..+++|++|+|++|.+..+|. +..+++|++|+|++|.+..++.++.+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 35788999999999876 4553 7899999999999999999887 999999999999999999998999999999999
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCC
Q 002163 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (958)
Q Consensus 185 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (958)
|++|.+..+| .+..+++|++|++++|. +..++. ++.+++|++|++++|.+. ....+..+++|+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~-------------~~~~l~~l~~L~ 178 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DIVPLAGLTKLQ 178 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC-------------CCGGGTTCTTCC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC-------------CchhhccCCCCC
Confidence 9999999986 69999999999999998 888843 899999999999999876 122289999999
Q ss_pred EEEeeccCCccCCCccccccccEEEEEecC
Q 002163 265 TLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (958)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (958)
.|++++|.+..++.-..+++|+.|.+..+.
T Consensus 179 ~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 179 NLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred EEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 999999998887644477888888876544
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3e-14 Score=156.01 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=137.1
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhc-CCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFA-GMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (958)
+.++..++.+..+|..+. +.++.|++++|.+. .++...|. ++++|++|+|++|.+..++ ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888887653 56889999999887 56667677 8999999999999999876 46899999999999999
Q ss_pred CCCCc--cccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCCCccChhhc---CCCCCCCEEEeeCCcccc
Q 002163 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLL---SGLSRLEDLYMGNTSVKW 240 (958)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i---~~L~~L~~L~l~~~~~~~ 240 (958)
.++.+ ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 98865 5688999999999999998877 5678999999999999998 888988755 57889999999988776
Q ss_pred cccccccCCCcCChhhhcCCCC--CCEEEeeccCC
Q 002163 241 EFEGLNVGRSNASLQELKLLSH--LTTLEIQICDA 273 (958)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 273 (958)
......+..++. ++.|++.+|..
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 233456666665 36778877653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=9e-14 Score=140.18 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=125.8
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 187 (958)
+++++.++.+. .+|..+. +.|++|++++|.+..+|. .|..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57788887776 6776542 689999999999998875 789999999999999999864 7899999999999999
Q ss_pred CCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEE
Q 002163 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (958)
Q Consensus 188 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (958)
|.++.+|.+ +..+++|++|++++|. +..++.+.++++++|++|++++|.+. ......+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEE
Confidence 999999865 6889999999999998 88887776899999999999999876 2334568889999999
Q ss_pred EeeccCC
Q 002163 267 EIQICDA 273 (958)
Q Consensus 267 ~l~~~~~ 273 (958)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9998864
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=8.5e-15 Score=159.31 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=127.9
Q ss_pred CCCcEEEeeCccCccCCcccCCC--CCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCC--CchhhcCCCCCCEEe
Q 002163 133 SNLRGLALSNMQFLSLPSLFHLP--LNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFD 207 (958)
Q Consensus 133 ~~Lr~L~L~~~~i~~lp~~i~~l--~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~ 207 (958)
..++.++++++.+. |..+..+ .++++|+++++.+..+ ..+.++++|++|++++|.+.. +|..+.++++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 45889999998876 5566777 8999999999998754 667889999999999998773 788899999999999
Q ss_pred ccCCCCCC-ccChhhcCCCCCCCEEEeeCC-cccccccccccCCCcCChhhhcCCCCCCEEEeecc-CCccCCCcccccc
Q 002163 208 LSGCSKLK-VIPPNLLSGLSRLEDLYMGNT-SVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC-DAMILPKGLFSKK 284 (958)
Q Consensus 208 l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~ 284 (958)
+++|. +. ..+.. ++++++|++|++++| .+.. ...+..++.+++|++|++++| .+..
T Consensus 125 L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~--------- 183 (336)
T 2ast_B 125 LEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRLDELNLSWCFDFTE--------- 183 (336)
T ss_dssp CTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTCCEEECCCCTTCCH---------
T ss_pred CcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCH----------HHHHHHHhcCCCCCEEcCCCCCCcCh---------
Confidence 99997 65 34444 788999999999988 3430 113445778888999998877 4321
Q ss_pred ccEEEEEecCccccccccCCceEEEecccccChHHHHHhhc-cccEEEccccC-Ccc-ccccccccccccccceEeeccC
Q 002163 285 LERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLK-GIEELYLDEVP-GIK-NVLYDLDIEGFLQLKHLHVQNN 361 (958)
Q Consensus 285 L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~-~L~~L~L~~~~-~~~-~~~~~l~~~~l~~L~~L~l~~~ 361 (958)
..++..+..++ +|++|+++++. .++ ..++. ....+++|++|++++|
T Consensus 184 ------------------------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 184 ------------------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDS 232 (336)
T ss_dssp ------------------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTC
T ss_pred ------------------------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCC
Confidence 12344556677 88888888763 232 11222 1256777777777777
Q ss_pred C
Q 002163 362 P 362 (958)
Q Consensus 362 ~ 362 (958)
.
T Consensus 233 ~ 233 (336)
T 2ast_B 233 V 233 (336)
T ss_dssp T
T ss_pred C
Confidence 5
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=8.6e-14 Score=144.59 Aligned_cols=148 Identities=18% Similarity=0.249 Sum_probs=132.7
Q ss_pred ccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEE
Q 002163 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~ 162 (958)
....++++|++.+|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|.... .+|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 345789999999999998885558999999999999887 5555 7999999999999999999886443 9999999
Q ss_pred ccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 163 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+++|.++.++.++.+++|++|++++|.++.+| .++.+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 99999999988999999999999999999997 79999999999999998 888843 899999999999998765
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.7e-13 Score=157.00 Aligned_cols=175 Identities=16% Similarity=0.202 Sum_probs=141.2
Q ss_pred CCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccC
Q 002163 86 KNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~ 165 (958)
.++++|++.+|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 37899999999988888766 488999999999887 677 347889999999999999988 666 999999999
Q ss_pred CCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccccccccc
Q 002163 166 CALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (958)
Q Consensus 166 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (958)
|.++.++. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. ++ ++|++|++++|.+.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~------ 193 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE------ 193 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS------
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC------
Confidence 99887755 78999999999999999886 67899999999998 888887 55 89999999998775
Q ss_pred ccCCCcCChhhhcCCCCC-------CEEEeeccCCccCCCcc-ccccccEEEEEecC
Q 002163 246 NVGRSNASLQELKLLSHL-------TTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (958)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~ 294 (958)
..+. +.. +| +.|++++|.+..+|..+ .+++|+.+++..+.
T Consensus 194 ------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 ------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ------SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 1112 332 55 99999999998888876 66777777765544
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=5.5e-14 Score=140.87 Aligned_cols=148 Identities=22% Similarity=0.300 Sum_probs=129.0
Q ss_pred ccCCCcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCC
Q 002163 83 DMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQ 159 (958)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr 159 (958)
....++++|++.+|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|+
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 45678999999999999887753 7899999999999887 6787888999999999999999998876 478999999
Q ss_pred EEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCC
Q 002163 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 160 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (958)
+|++++|.++.+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|. + .+.+++|+.|++..+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTTHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCHHHHHHHHH
Confidence 999999999875 4589999999999999999988865 7999999999999996 2 356678888888777
Q ss_pred ccc
Q 002163 237 SVK 239 (958)
Q Consensus 237 ~~~ 239 (958)
.+.
T Consensus 176 ~~~ 178 (208)
T 2o6s_A 176 KHS 178 (208)
T ss_dssp HCT
T ss_pred hCC
Confidence 665
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=2.3e-15 Score=167.05 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCCCCCCEEEccCCCCCC-----c-cccCCCCCccEEEccCCCCC
Q 002163 153 HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE 191 (958)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~ 191 (958)
..+++|++|++++|.+.. + ..+.++++|++|++++|.+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445555555555555443 1 34445555555555555443
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=8.9e-14 Score=133.96 Aligned_cols=140 Identities=27% Similarity=0.241 Sum_probs=103.1
Q ss_pred CCCCCcEEEeeCccCc--cCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCC-CchhhcCCCCCCEEe
Q 002163 131 GMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFD 207 (958)
Q Consensus 131 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 207 (958)
..++|++|++++|.+. .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3466788888888877 7777777888888888888887777777888888888888888776 677777788888888
Q ss_pred ccCCCCCCccCh-hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCc
Q 002163 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (958)
Q Consensus 208 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (958)
+++|. +..+|. ..++.+++|++|++++|.+.. ........+..+++|+.|+++.+....+|.+
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~--------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN--------LNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT--------STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc--------hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88886 777652 337788888888888887651 0000114677888888888888877666643
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.9e-13 Score=138.87 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=126.8
Q ss_pred ccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEcc
Q 002163 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (958)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 186 (958)
-++++++++.+. .+|..+ .++|++|++++|.+..+ |..|..+++|++|++++|.++.+ ..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456888777766 677654 37899999999999977 67899999999999999999876 557999999999999
Q ss_pred CCCCCCCchh-hcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 187 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
+|.++.+|.. +..+++|++|++++|. +..+|.+ +.++++|++|++++|.+. ......+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCCE
Confidence 9999999765 6899999999999998 9999988 799999999999999876 233456888999999
Q ss_pred EEeeccCCc
Q 002163 266 LEIQICDAM 274 (958)
Q Consensus 266 L~l~~~~~~ 274 (958)
|++.+|...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999988754
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=137.46 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=126.1
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC--cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEcc
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 186 (958)
++++++++.+. .+|..+ ...+++|++++|.+..++ ..|..+++|++|++++|.++.+ ..++++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58899988876 677654 345789999999999884 3589999999999999999865 479999999999999
Q ss_pred CCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCE
Q 002163 187 DSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (958)
Q Consensus 187 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (958)
+|.++.+|. .++.+++|++|++++|. +..++...++++++|++|++++|.+. ...+..++.+++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCE
Confidence 999998875 58999999999999998 88886666899999999999999876 344678889999999
Q ss_pred EEeeccCC
Q 002163 266 LEIQICDA 273 (958)
Q Consensus 266 L~l~~~~~ 273 (958)
|++++|..
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99998864
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=9.1e-14 Score=152.16 Aligned_cols=165 Identities=23% Similarity=0.287 Sum_probs=141.0
Q ss_pred ecCcccCCCccccCCCcCEEEeecCCCeecCCCC---CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC
Q 002163 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (958)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 148 (958)
.+......+. ..+..+++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|+|++|.+..+
T Consensus 26 ~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 26 SKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp CSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcC
Confidence 4444444443 56778999999999999887653 7899999999999987 67777789999999999999999988
Q ss_pred Cc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchhh----cCCCCCCEEeccCCCCCCccChhh
Q 002163 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEM----AQLTQLRLFDLSGCSKLKVIPPNL 221 (958)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~~p~~~ 221 (958)
|. .|..+.+|++|+|++|.+..+ ..+..+++|++|++++|.++.+|..+ .++++|++|++++|. +..+|...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHH
Confidence 65 689999999999999999854 68999999999999999999999765 689999999999998 99999776
Q ss_pred cCCCCC--CCEEEeeCCccc
Q 002163 222 LSGLSR--LEDLYMGNTSVK 239 (958)
Q Consensus 222 i~~L~~--L~~L~l~~~~~~ 239 (958)
+..+++ ++.|++.+|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 888887 488999998764
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.9e-14 Score=159.61 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=91.4
Q ss_pred EeeCccCccCCcccCCCCCCCEEEccCCCCCCc------cccCCCCCccEEEccCCCCC----CCchhh-------cCCC
Q 002163 139 ALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI------AIIGNLKKLEILSLVDSNIE----QLPEEM-------AQLT 201 (958)
Q Consensus 139 ~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l------~~i~~L~~L~~L~l~~~~l~----~lp~~i-------~~L~ 201 (958)
.++...+..++..+..+++|++|++++|.+... ..+.++++|++|++++|.+. .+|.++ .+++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 333334444555555555555555555554421 23445556666666555333 234333 5666
Q ss_pred CCCEEeccCCCCCCc-----cChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCC---------CCCCEEE
Q 002163 202 QLRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL---------SHLTTLE 267 (958)
Q Consensus 202 ~L~~L~l~~~~~l~~-----~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~ 267 (958)
+|++|++++|. +.. +|.. +.++++|++|++++|.+..... ......+..+ ++|++|+
T Consensus 95 ~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 95 KLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp TCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred cccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 66777766665 444 4433 5666677777776665531100 0112223333 6788888
Q ss_pred eeccCCccCCCccccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCccc-----cc
Q 002163 268 IQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKN-----VL 342 (958)
Q Consensus 268 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-----~~ 342 (958)
+++|.+..... ..+...+..+++|++|+++++. +.+ ..
T Consensus 166 L~~n~l~~~~~------------------------------------~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~ 208 (386)
T 2ca6_A 166 CGRNRLENGSM------------------------------------KEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLL 208 (386)
T ss_dssp CCSSCCTGGGH------------------------------------HHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHH
T ss_pred CCCCCCCcHHH------------------------------------HHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHH
Confidence 87776421000 1111234456777888877753 221 12
Q ss_pred c-ccccccccccceEeeccCC
Q 002163 343 Y-DLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 343 ~-~l~~~~l~~L~~L~l~~~~ 362 (958)
+ .+ ..+++|++|++++|.
T Consensus 209 ~~~l--~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 209 LEGL--AYCQELKVLDLQDNT 227 (386)
T ss_dssp HTTG--GGCTTCCEEECCSSC
T ss_pred HHHh--hcCCCccEEECcCCC
Confidence 2 22 567778888887775
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.2e-14 Score=159.35 Aligned_cols=127 Identities=15% Similarity=0.187 Sum_probs=60.9
Q ss_pred ccEEEcCCCcCCCCcCh----hhhcCCC-CCcEEEeeCccCccC-CcccCCC-----CCCCEEEccCCCCCCc--cc---
Q 002163 110 LEFFCMSPRDHSIKIPN----HVFAGMS-NLRGLALSNMQFLSL-PSLFHLP-----LNLQTLCLDRCALGDI--AI--- 173 (958)
Q Consensus 110 L~~L~l~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~Lr~L~L~~~~l~~l--~~--- 173 (958)
|++|++++|.+. ..+. ..|.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++.. ..
T Consensus 24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 555555555544 2332 3345555 566666666655533 2233332 5566666666655422 21
Q ss_pred -cCCC-CCccEEEccCCCCCCCch-h----hcC-CCCCCEEeccCCCCCCc-----cChhhcCCCC-CCCEEEeeCCccc
Q 002163 174 -IGNL-KKLEILSLVDSNIEQLPE-E----MAQ-LTQLRLFDLSGCSKLKV-----IPPNLLSGLS-RLEDLYMGNTSVK 239 (958)
Q Consensus 174 -i~~L-~~L~~L~l~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~~-----~p~~~i~~L~-~L~~L~l~~~~~~ 239 (958)
+..+ ++|++|++++|.+...+. . +.. .++|++|++++|. +.. ++.. +..+. +|++|++++|.+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCCc
Confidence 3333 556666666665554432 2 222 2456666666554 442 2221 23333 5666666655543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=8.8e-13 Score=151.07 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=143.4
Q ss_pred EecCcccCCCccccCCCcCEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc
Q 002163 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (958)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 150 (958)
+.+.....++. ...+++++|++++|.+..+| ..+++|++|++++|.+.. +|. |.+ +|++|++++|.++.+|.
T Consensus 66 Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~lp~ 137 (571)
T 3cvr_A 66 LNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTMLPE 137 (571)
T ss_dssp CCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSCCCC
T ss_pred eCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCCCCC
Confidence 44444444443 34678999999999999888 447999999999999884 776 444 99999999999999998
Q ss_pred ccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCC--
Q 002163 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL-- 228 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L-- 228 (958)
.+++|++|++++|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +|
T Consensus 138 ---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~ 204 (571)
T 3cvr_A 138 ---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHH 204 (571)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-------
T ss_pred ---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhc
Confidence 68999999999999987755 68999999999999999998 66 999999999998 889997 454 77
Q ss_pred -----CEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCcc
Q 002163 229 -----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (958)
Q Consensus 229 -----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (958)
++|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 205 ~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999875 356678889999999999998743
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.7e-13 Score=127.62 Aligned_cols=129 Identities=27% Similarity=0.258 Sum_probs=89.4
Q ss_pred CCCCcEEEeeCccCc--cCCcccCCCCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCC-CchhhcCCCCCCEEec
Q 002163 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (958)
Q Consensus 132 l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 208 (958)
.++|++|++++|.+. .+|..++.+++|++|++++|.++.+..++.+++|++|++++|.+.. +|..++++++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 456777777777776 6777777777777787777777766777777788888888777776 6766777788888888
Q ss_pred cCCCCCCccCh-hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEee
Q 002163 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (958)
Q Consensus 209 ~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (958)
++|. +..+|. ..++.+++|++|++++|.+... .......++.+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL--------NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS--------TTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch--------HHHHHHHHHHCCCcccccCC
Confidence 8777 666541 2267777888888877765410 00011456777777777654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=4.2e-13 Score=129.21 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=66.3
Q ss_pred CCccEEEcCCCcCC-CCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC-c-cccCCCCCccEEE
Q 002163 108 PQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILS 184 (958)
Q Consensus 108 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~ 184 (958)
++|+.|++++|.+. ..+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 233322 34555555555555555554 445555555555555555554 3 2333455555555
Q ss_pred ccCCCCCCCc--hhhcCCCCCCEEeccCCCCCCccCh---hhcCCCCCCCEEEeeCCcc
Q 002163 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP---NLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 185 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~~~~~ 238 (958)
+++|.++.+| ..++++++|++|++++|. +..+|. ..+..+++|++|++.+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555555554 455555555555555555 555544 2355555555555555543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.9e-15 Score=172.85 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=142.8
Q ss_pred CCCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCc-------------CCCCcChhhhcCCCCCcEEE-eeCccCccCC
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRD-------------HSIKIPNHVFAGMSNLRGLA-LSNMQFLSLP 149 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-L~~~~i~~lp 149 (958)
.+.+++|++++|.++.+|..+ .+++|+.|++.+|. .. ..++..+..+++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhh
Confidence 345667777777777777665 56777777775543 22 23334567777777777 5554333222
Q ss_pred c------ccCC--CCCCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhh
Q 002163 150 S------LFHL--PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (958)
Q Consensus 150 ~------~i~~--l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~ 221 (958)
. .+.. ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++|. ++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1 1111 1259999999999998877999999999999999999999999999999999999998 88898 4
Q ss_pred cCCCCCCCEEEeeCCcccccccccccCCCcCC-hhhhcCCCCCCEEEeeccCCccCCCcc-----ccccccEE
Q 002163 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNAS-LQELKLLSHLTTLEIQICDAMILPKGL-----FSKKLERY 288 (958)
Q Consensus 222 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 288 (958)
++++++|++|++++|.+. ... +..++.+++|+.|++++|.+...|+.. .+++|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 899999999999999876 233 788999999999999999988777654 25566655
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.9e-12 Score=127.35 Aligned_cols=124 Identities=22% Similarity=0.334 Sum_probs=92.1
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS 188 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~ 188 (958)
++++++++.+. .+|..++ ++|++|++++|.++.+|..|..+++|++|++++|.++.+ ..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 4554432 467788888888877777788888888888888887755 45778888888888888
Q ss_pred CCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 189 NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 189 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
.++.+|. .++.+++|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8887764 57888888888888887 77888776778888888888877653
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=3.2e-13 Score=127.11 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=67.5
Q ss_pred CCccEEEcCCCcCC-CCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCC-c-cccCCCCCccEEE
Q 002163 108 PQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILS 184 (958)
Q Consensus 108 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~ 184 (958)
++++.|++++|.+. ..+|. .|..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34445555554443 23332 345555666666666655555 445556666666666666554 3 3344466666666
Q ss_pred ccCCCCCCCc--hhhcCCCCCCEEeccCCCCCCccCh---hhcCCCCCCCEEEe
Q 002163 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP---NLLSGLSRLEDLYM 233 (958)
Q Consensus 185 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l 233 (958)
+++|.++.+| ..++.+++|++|++++|. +..+|. ..++.+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666666543 456666666666666665 555554 33555666666654
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=3.1e-13 Score=148.10 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=116.4
Q ss_pred EEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-----cccCCCC-CCCEEEccCCCCCCc--cccCCC-----CC
Q 002163 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-----SLFHLPL-NLQTLCLDRCALGDI--AIIGNL-----KK 179 (958)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~l~~l--~~i~~L-----~~ 179 (958)
+.++.|.+...+| .++...++|++|++++|.+...+ +.+..++ +|++|++++|.++.. ..++.+ ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4567777764444 55566677999999999998776 6788888 999999999998753 555554 99
Q ss_pred ccEEEccCCCCCCCc-hh----hcCC-CCCCEEeccCCCCCCccChhhc----CC-CCCCCEEEeeCCcccccccccccC
Q 002163 180 LEILSLVDSNIEQLP-EE----MAQL-TQLRLFDLSGCSKLKVIPPNLL----SG-LSRLEDLYMGNTSVKWEFEGLNVG 248 (958)
Q Consensus 180 L~~L~l~~~~l~~lp-~~----i~~L-~~L~~L~l~~~~~l~~~p~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~ 248 (958)
|++|++++|.+...+ .. +..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------- 153 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------- 153 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------
Confidence 999999999998554 33 5555 899999999998 877775433 34 36999999999987621
Q ss_pred CCcCChhhhcCCC-CCCEEEeeccCCccC
Q 002163 249 RSNASLQELKLLS-HLTTLEIQICDAMIL 276 (958)
Q Consensus 249 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 276 (958)
........+..++ +|++|++++|.+...
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 1122344556666 899999999986544
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=7.1e-13 Score=158.04 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=99.6
Q ss_pred CCCcCEEEeecCCCeecCCCC-CCCCccEEEc-----CCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCC
Q 002163 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCM-----SPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNL 158 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 158 (958)
..+++++++..+.+...+... ....|+.+.+ ..|.+ .++...|..++.|++|+|++|.+..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 356888899888776655433 3333333333 22322 245667889999999999999999999988899999
Q ss_pred CEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCc
Q 002163 159 QTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (958)
Q Consensus 159 r~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (958)
++|+|++|.++.+ ..|++|++|++|+|++|.++.+|..|++|++|++|++++|. +..+|.+ ++++++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 9999999998865 77999999999999999999999999999999999999997 8899988 8999999999999998
Q ss_pred cc
Q 002163 238 VK 239 (958)
Q Consensus 238 ~~ 239 (958)
+.
T Consensus 328 l~ 329 (727)
T 4b8c_D 328 LE 329 (727)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.1e-12 Score=127.10 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCCCCcEEEeeCccCccCCcccCCCC-CCCEEEccCCCCCCccccCCCCCccEEEccCCCCCCCchhh-cCCCCCCEEec
Q 002163 131 GMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFDL 208 (958)
Q Consensus 131 ~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 208 (958)
++.+|++|++++|.+..+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|..+ +.+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34444444444444444432 22222 44444444444444444444445555555554444444332 44555555555
Q ss_pred cCCCCCCccCh-hhcCCCCCCCEEEeeCCcc
Q 002163 209 SGCSKLKVIPP-NLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 209 ~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 238 (958)
++|. +..+|. ..++.+++|++|++++|.+
T Consensus 96 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 96 TNNS-LVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCc-CCcchhhHhhhcCCCCCEEEecCCCC
Confidence 5544 444443 1144445555555554443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=3.5e-12 Score=125.44 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=44.9
Q ss_pred CCcEEEeeCccCccCCcc--cCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEec
Q 002163 134 NLRGLALSNMQFLSLPSL--FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDL 208 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp~~--i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 208 (958)
+|++|++++|.+..++.. ++.+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|. .++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444444321 44444444444444444432 334444444444444444444332 2444444444444
Q ss_pred cCCCCCCccChhhcCCCCCCCEEEeeCCc
Q 002163 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (958)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (958)
++|. +..++.+.++.+++|++|++++|.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4444 443333334444455555544443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=4e-12 Score=125.04 Aligned_cols=125 Identities=19% Similarity=0.311 Sum_probs=111.0
Q ss_pred cEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-c--ccCCCCCccEEEccCCCCCCC-chhhcCCCCCCEEeccCC
Q 002163 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-A--IIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGC 211 (958)
Q Consensus 136 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~--~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~ 211 (958)
++++++++.++.+|..+.. +|++|++++|.++.+ . .++++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987755 999999999999876 3 389999999999999999987 678999999999999999
Q ss_pred CCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCc
Q 002163 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (958)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (958)
. +..++...++++++|++|++++|.+. ...+..++.+++|+.|++++|...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 99998877899999999999999876 334677889999999999988753
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=6e-13 Score=129.08 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=100.8
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cc-cCCCCCccEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AI-IGNLKKLEIL 183 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~-i~~L~~L~~L 183 (958)
.+++|+.|++++|.+. .++. +....++|++|++++|.+..+ ..++.+++|++|++++|.++.+ +. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5677888888888776 4543 333334888888888888877 5788888889999988888865 33 4788889999
Q ss_pred EccCCCCCCCch--hhcCCCCCCEEeccCCCCCCccChh---hcCCCCCCCEEEeeCCccc
Q 002163 184 SLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 184 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~~~ 239 (958)
++++|.+..+|. .++.+++|++|++++|. +..+|.. .++.+++|+.|+++++...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999888888886 78888899999998887 7777764 4678888888888776543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.5e-11 Score=120.75 Aligned_cols=124 Identities=25% Similarity=0.309 Sum_probs=109.2
Q ss_pred cEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCC
Q 002163 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSK 213 (958)
Q Consensus 136 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~ 213 (958)
++++++++.++.+|..+. .+|++|++++|.++.+ ..+.++++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998764 6999999999999876 78999999999999999999887 469999999999999998
Q ss_pred CCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 214 LKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 214 l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
+..++.+.++++++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-----------VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-----------eeChhhhhcCccccEEEeCCCCe
Confidence 99998877999999999999999876 23344688899999999988764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.9e-11 Score=117.28 Aligned_cols=106 Identities=26% Similarity=0.471 Sum_probs=60.5
Q ss_pred CCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEec
Q 002163 133 SNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDL 208 (958)
Q Consensus 133 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 208 (958)
++|++|++++|.+..+|. .++.+++|++|++++|.++.+ ..++.+++|++|++++|.++.+|.. ++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554443 345555555555555555543 2345566666666666666655543 456666666666
Q ss_pred cCCCCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
++|. +..+|.+.+.++++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6665 66666654566666666666666543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.5e-11 Score=116.75 Aligned_cols=122 Identities=24% Similarity=0.348 Sum_probs=87.5
Q ss_pred CEEEeecCCCeecCCCCCCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCC
Q 002163 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (958)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (958)
+.++..++.+..+|..+ .++|+.|++++|.+. .++...|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 56667777776666544 367778888777766 5666667777778888888877777764 35777788888888877
Q ss_pred CCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 002163 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (958)
Q Consensus 168 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 212 (958)
++.+ ..++.+++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7754 3467777888888887777777755 4667778888887776
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.8e-11 Score=141.10 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 002163 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 212 (958)
.|++|++++|.++.+|. |+.+++|++|++++|.++.+ ..++++++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47888888888888876 88888888888888887765 67888888888888888888887 78888888888888887
Q ss_pred CCCcc--ChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEe
Q 002163 213 KLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (958)
Q Consensus 213 ~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (958)
+..+ |.. ++++++|++|++++|.+.. .......-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~--------~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ--------EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGG--------SSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCC--------CccHHHHHHHHCcccCccCC
Confidence 7777 555 7888888888888887651 11122233445777777753
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=2e-13 Score=135.42 Aligned_cols=136 Identities=22% Similarity=0.290 Sum_probs=97.6
Q ss_pred hhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEEccCCCCCCCchhhcCCCCCCEE
Q 002163 128 VFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (958)
Q Consensus 128 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 206 (958)
.|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++.+| .++++++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4678888888888888888887 788888888888888887765 45566788888888888888877 68888888888
Q ss_pred eccCCCCCCccCh-hhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEE
Q 002163 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (958)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (958)
++++|. +..++. ..++++++|++|++++|.+....... ..........+..+++|+.|+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 888887 777664 33788888888888888764110000 000011123367788888776
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2.1e-11 Score=145.40 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=110.5
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc-cccCCCCCccEEE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILS 184 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 184 (958)
.++.|++|++++|.+. .++..+| ++++|++|+|++|.+..+|..|+++++|++|+|++|.|+.+ ..+++|++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 7888776 89999999999999999999999999999999999999876 7899999999999
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCC-CCEEEeeCCccc
Q 002163 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR-LEDLYMGNTSVK 239 (958)
Q Consensus 185 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~-L~~L~l~~~~~~ 239 (958)
|++|.+..+|.+|++|++|++|++++|. +...+...+..+.. +..|++.+|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999998 66554443433211 112455555443
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.7e-10 Score=111.05 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=71.2
Q ss_pred cEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 002163 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (958)
Q Consensus 136 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 212 (958)
++++++++.+..+|..+. .+|++|++++|.++.+ ..++++++|++|++++|+++.+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776554 6777777777776654 4567777777777777777777654 4677777777777776
Q ss_pred CCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 213 ~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+..+|.+.++++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777665677777777777776554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2e-10 Score=110.13 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=75.6
Q ss_pred CcEEEeeCccCccCCcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCchh-hcCCCCCCEEeccCC
Q 002163 135 LRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (958)
Q Consensus 135 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 211 (958)
.++++++++.++.+|..+. .+|++|++++|.++.+ ..++++++|++|++++|.++.+|.+ +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776653 6777788877777754 4577778888888888877777654 577888888888887
Q ss_pred CCCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
. +..+|.+.+.++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 77777766777888888888777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=5.8e-13 Score=132.02 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=118.5
Q ss_pred CcCEEEeecC--CCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCcccCCCCCCCEEEc
Q 002163 87 NCPTIFLHDC--KHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (958)
Q Consensus 87 ~~r~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 163 (958)
.++...+.+. .++.++..+ .+++|++|++++|.+. .+| .|.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4556666543 444555444 6899999999999887 466 578999999999999999999998888899999999
Q ss_pred cCCCCCCccccCCCCCccEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCCCccC----------hhhcCCCCCCCEE
Q 002163 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIP----------PNLLSGLSRLEDL 231 (958)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p----------~~~i~~L~~L~~L 231 (958)
++|.++.++.++.+++|++|++++|.+..+|. .+.++++|++|++++|. +...+ ...+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999988889999999999999999998875 79999999999999997 53332 2346889999998
Q ss_pred E
Q 002163 232 Y 232 (958)
Q Consensus 232 ~ 232 (958)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=4.9e-10 Score=107.79 Aligned_cols=103 Identities=22% Similarity=0.319 Sum_probs=64.2
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 187 (958)
++++++++.+. .+|..++ ++|++|++++|.+..+ |..|.++++|++|+|++|.++.+ ..+.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555543 4554332 5566666666666655 44566666677777776666654 2356677777777777
Q ss_pred CCCCCCchh-hcCCCCCCEEeccCCCCCCccC
Q 002163 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIP 218 (958)
Q Consensus 188 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p 218 (958)
|.++.+|.. ++++++|++|++++|. +...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 777777654 6777777777777776 44444
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1e-09 Score=118.23 Aligned_cols=188 Identities=17% Similarity=0.128 Sum_probs=111.5
Q ss_pred CCCcCEEEeecCCCe--------------------ecCCCC--C--------CCCccEEEcCCCcCCCCcChhhhcCCCC
Q 002163 85 LKNCPTIFLHDCKHW--------------------EVPEGL--E--------YPQLEFFCMSPRDHSIKIPNHVFAGMSN 134 (958)
Q Consensus 85 ~~~~r~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 134 (958)
..++++|++++|.+. .++... . +++|+.+.+.. .+. .+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 456788888877765 333322 4 67777777766 443 566666777777
Q ss_pred CcEEEeeCccCccCC-cccCCCCCCCEEEccCCCC----CCcc--cc---------------------------------
Q 002163 135 LRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCAL----GDIA--II--------------------------------- 174 (958)
Q Consensus 135 Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l----~~l~--~i--------------------------------- 174 (958)
|+.|+++++.+..++ .+|..+.++.++.+..... ..+. .+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 777777777666554 3555555555555444110 0000 00
Q ss_pred -----------------CCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCCC-EEEeeC
Q 002163 175 -----------------GNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGN 235 (958)
Q Consensus 175 -----------------~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~ 235 (958)
..+.+|+.+++++|+++.+|. .|..+.+|+.+++..+ ++.++.+.+.++.+|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 025677777777767777764 4667777777777665 6667766677777777 777665
Q ss_pred CcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEE
Q 002163 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERY 288 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l 288 (958)
.+. ......+.++++|+.+++..+.+..++..+ ...+|+.+
T Consensus 284 -~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 -SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred -cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 222 123456667777777777666666666554 33444443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1e-09 Score=105.21 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=61.1
Q ss_pred cEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-CcccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccC
Q 002163 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (958)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 187 (958)
++++++++.+. .+|..+ .++|++|+|++|.++.+ |..|..+++|++|++++|.++.+ ..+.++++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555544 355433 25566666666666655 44566666666666666666654 3356677777777777
Q ss_pred CCCCCCchh-hcCCCCCCEEeccCCC
Q 002163 188 SNIEQLPEE-MAQLTQLRLFDLSGCS 212 (958)
Q Consensus 188 ~~l~~lp~~-i~~L~~L~~L~l~~~~ 212 (958)
|.++.+|.. +.++++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777766653 6677777777777765
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=3.1e-09 Score=114.46 Aligned_cols=192 Identities=16% Similarity=0.191 Sum_probs=139.1
Q ss_pred cCCCcCEEEeecCCC-eecCCCCC-CCCccEEEcCCCcCCC-------------------CcChhhhcC--------CCC
Q 002163 84 MLKNCPTIFLHDCKH-WEVPEGLE-YPQLEFFCMSPRDHSI-------------------KIPNHVFAG--------MSN 134 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------l~~ 134 (958)
...++++|.+.++-- .++..... +++|++|++++|.+.. .++...|.+ +++
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 345788898886411 11111112 7899999999887650 467778889 999
Q ss_pred CcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCC-------CC-------------
Q 002163 135 LRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSN-------IE------------- 191 (958)
Q Consensus 135 Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~-------l~------------- 191 (958)
|+.|+|.+ .++.+++ +|.++++|+.+++.++.+..+ ..|..+.++.++.+.... +.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 99999999 8888875 799999999999999988754 667777788877765521 00
Q ss_pred -------CCchhh----------------------------cCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCC
Q 002163 192 -------QLPEEM----------------------------AQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 192 -------~lp~~i----------------------------~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (958)
.+|..+ ..+.+|+++++++|. +..+|.+.+.++.+|+++++.++
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc
Confidence 111111 137899999999887 99999998999999999999886
Q ss_pred cccccccccccCCCcCChhhhcCCCCCC-EEEeeccCCccCCCcc--ccccccEEEE
Q 002163 237 SVKWEFEGLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKGL--FSKKLERYKI 290 (958)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~--~~~~L~~l~l 290 (958)
+. ......+.++.+|+ .+.+.. .+..++..+ ...+|+.+.+
T Consensus 261 -i~-----------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 261 -LK-----------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp -CC-----------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred -cc-----------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 33 23456788999999 999987 666776665 4566666655
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.5e-08 Score=108.41 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=63.0
Q ss_pred EEeeCc-cCccCCcccCCCCCCCEEEccC-CCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCC
Q 002163 138 LALSNM-QFLSLPSLFHLPLNLQTLCLDR-CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 138 L~L~~~-~i~~lp~~i~~l~~Lr~L~L~~-~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 212 (958)
++++++ .+..+|. |..+.+|++|+|++ |.++.+ ..|+.|.+|++|+|++|+++.+|. .|++|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455665 5666666 66666666666664 666643 446666777777777776666543 46677777777777766
Q ss_pred CCCccChhhcCCCCCCCEEEeeCCccc
Q 002163 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 213 ~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
+..+|.+.+..+. |++|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666444444 777777666543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=1.2e-09 Score=118.86 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=26.2
Q ss_pred CCCccEEEccCCCCCC-----CchhhcCCCCCCEEeccCCCCCCccC----hhhcCCCCCCCEEEeeCCcc
Q 002163 177 LKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIP----PNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 177 L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p----~~~i~~L~~L~~L~l~~~~~ 238 (958)
..+|++|++++|.+.. ++..+..+++|++|++++|. +.+.. ...+...++|++|++++|.+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3444555555444432 23333444555555555544 33211 01133444555555555544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=7.1e-08 Score=104.75 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=76.1
Q ss_pred EEEcCCC-cCCCCcChhhhcCCCCCcEEEeeC-ccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEcc
Q 002163 112 FFCMSPR-DHSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (958)
Q Consensus 112 ~L~l~~~-~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 186 (958)
.++++++ .+. .+|. |..+++|++|+|++ |.+..+| ..|+.+.+|++|+|++|.++.+ ..|++|++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3466665 454 5776 68888888888886 8888776 4788888888888888888854 567888899999999
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCC
Q 002163 187 DSNIEQLPEEMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 187 ~~~l~~lp~~i~~L~~L~~L~l~~~~ 212 (958)
+|.+..+|..+.....|++|++.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 98888888765444449999998887
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=2.2e-09 Score=116.87 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=116.7
Q ss_pred cCCCcCEEEeecCCCeecC-----CCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccC-----Ccc
Q 002163 84 MLKNCPTIFLHDCKHWEVP-----EGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-----PSL 151 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-----p~~ 151 (958)
+.+.++++++.+|.+.... ..+ ..++|+.|++++|.+...-...++..+++|++|+|++|.+... ...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4568999999999875422 111 3479999999999876433334455677899999999998632 223
Q ss_pred c-CCCCCCCEEEccCCCCCC-----c-cccCCCCCccEEEccCCCCCC-----CchhhcCCCCCCEEeccCCCCCCccCh
Q 002163 152 F-HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (958)
Q Consensus 152 i-~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p~ 219 (958)
+ ...++|++|+|++|.++. + ..+...++|++|++++|.+.. ++..+...++|++|++++|. ++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 3 356899999999999873 2 445788999999999998873 45678889999999999998 765332
Q ss_pred h----hcCCCCCCCEEEeeCCccc
Q 002163 220 N----LLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 220 ~----~i~~L~~L~~L~l~~~~~~ 239 (958)
. .+...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 1446789999999999876
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=9.3e-07 Score=97.07 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=124.0
Q ss_pred CCcCEEEeecCCCeecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEc
Q 002163 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (958)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L 163 (958)
..++.+.+.+ .++.++... .-.+|+.+.+..+ +. .+....|.+. +|+.+.+.+ .+..++ .+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3445555442 344444332 2235777776554 22 4555666664 477777665 455554 36666777777777
Q ss_pred cCCCCCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccc
Q 002163 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKW 240 (958)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 240 (958)
.++.++.+ ..+. ..+|+.+.+.. +++.++ ..|.++.+|+.+++..+ +..++...+.+ .+|+.+.+.++ +.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-
Confidence 76666644 3333 46677777663 355554 34666667777776653 56666665555 56666666433 11
Q ss_pred cccccccCCCcCChhhhcCCCCCCEEEeeccCCc-----cCCCcc--ccccccEEEEEecCccccccccCCceEEEeccc
Q 002163 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-----ILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLY 313 (958)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~ 313 (958)
......+.++++|+.+.+..+... .++..+ ...+|+.+.+..+ +
T Consensus 261 ----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-----------i-------- 311 (401)
T 4fdw_A 261 ----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-----------I-------- 311 (401)
T ss_dssp ----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-----------C--------
T ss_pred ----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-----------e--------
Confidence 122345666666776666655433 344333 3345554433210 0
Q ss_pred ccChHH-HHHhhccccEEEccccCCccccccccccccccccceEeeccCC
Q 002163 314 TSNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (958)
Q Consensus 314 ~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (958)
..++. .+..+++|+.+.+.. +++. +..-.+..+ +|+.+.+.++.
T Consensus 312 -~~I~~~aF~~c~~L~~l~lp~--~l~~-I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 -RILGQGLLGGNRKVTQLTIPA--NVTQ-INFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -CEECTTTTTTCCSCCEEEECT--TCCE-ECTTSSSSS-CCCEEEECCSS
T ss_pred -EEEhhhhhcCCCCccEEEECc--cccE-EcHHhCCCC-CCCEEEEcCCC
Confidence 11111 233456777777743 2333 222234667 88888888764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=3.1e-06 Score=92.94 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=97.7
Q ss_pred CcCEEEeecCCCeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEc
Q 002163 87 NCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (958)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L 163 (958)
+++.+.+.. .+..+.... .|++|+.+.+..|.+. .++...|. ...|+.+.+..+ +..++ .+|.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 466666653 455555433 6777777777766655 56666665 466777777633 55554 35666667777766
Q ss_pred cCCCCCCc--cccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCC-----ccChhhcCCCCCCCEEEeeC
Q 002163 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK-----VIPPNLLSGLSRLEDLYMGN 235 (958)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-----~~p~~~i~~L~~L~~L~l~~ 235 (958)
..+ ++.+ ..|.+ .+|+.+.+. ++++.++ ..|.++.+|+.+++.++. .. .++...+.++.+|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 653 3322 33333 456666653 2444443 345556666666665543 22 35555555666666665543
Q ss_pred CcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCCcc--ccccccEEEEEec
Q 002163 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~ 293 (958)
+ +. ......+.++++|+.+.+..+ +..++..+ .. +|+.+.+..+
T Consensus 310 ~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 310 S-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp T-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred c-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 2 21 112334555555555555322 33444433 22 5555555433
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3.7e-07 Score=85.60 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=23.8
Q ss_pred ccceeccccCcccccccCCCccccCCCccEEEeccCCCCcc
Q 002163 877 KLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKI 917 (958)
Q Consensus 877 ~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~ 917 (958)
+|++|++++|+++++-..... .++++|++|++++||+++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 455555555555554433322 3567777777777777765
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=5.6e-05 Score=83.24 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=67.5
Q ss_pred CeecCCCC--CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--c
Q 002163 98 HWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--A 172 (958)
Q Consensus 98 ~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~ 172 (958)
+.++.... .|.+|+++.+..+ +. .+....|.++.+|+.+++..+ ++.+++ +|..+.+|+.+.+..+ +..+ .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34454432 6788888888643 33 567777888888888888654 555543 6677777776665433 2211 2
Q ss_pred ccCCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEee
Q 002163 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (958)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (958)
.+.....++..... .+..+. ..+.++.+|+.+.+..+ +..++.+.+.++.+|+.+.+.
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 23333222222111 111121 23455555555555432 344554445555555555543
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=9.6e-07 Score=82.81 Aligned_cols=88 Identities=11% Similarity=0.193 Sum_probs=39.2
Q ss_pred CccEEEEeccCCcc--cccCCccccCcccEEEEccCcCCccccchHhhhc---CCCccEEEEcccchhHHHhccCccccc
Q 002163 796 NLESLEVWWCENLI--NLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKS---LVCLTKLRIDGCRMLTEIISKEEDVAE 870 (958)
Q Consensus 796 ~L~~L~i~~c~~l~--~l~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~---l~sL~~L~i~~c~~l~~~~~~~~~~~~ 870 (958)
.|++|++++|. ++ ++ ..+..+++|++|++++|.++++-....+.+. .++|++|+|++|+.+++..-..
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 34555555554 21 12 2234455555555555555554332222221 1345555555555544421110
Q ss_pred ccccccccceeccccCccccc
Q 002163 871 DEIVFSKLKWVSLERLENLTS 891 (958)
Q Consensus 871 ~~~~~~~L~~L~l~~c~~L~~ 891 (958)
...+++|++|.+++|+.+++
T Consensus 135 -L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 -LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGGCTTCCEEEEESCTTCCC
T ss_pred -HhcCCCCCEEECCCCCCCCc
Confidence 11245555555555555554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1e-06 Score=94.78 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCcCEEEeecCCCe---------ecCCCC-CCCCccEEEcCCCcCC--------CCcChhhhcCCCCCcEEEeeCccCcc
Q 002163 86 KNCPTIFLHDCKHW---------EVPEGL-EYPQLEFFCMSPRDHS--------IKIPNHVFAGMSNLRGLALSNMQFLS 147 (958)
Q Consensus 86 ~~~r~l~l~~~~~~---------~l~~~~-~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~Lr~L~L~~~~i~~ 147 (958)
.+++.|.+....+. .+.+.. .+++|+.|.+...... ..-...++..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35677777654332 112222 4689999988654221 01123556788999999998874234
Q ss_pred CCcccCCCCCCCEEEccCCCCCC--ccccC--CCCCccEEEccCC--C------CCCCchhh--cCCCCCCEEeccCCCC
Q 002163 148 LPSLFHLPLNLQTLCLDRCALGD--IAIIG--NLKKLEILSLVDS--N------IEQLPEEM--AQLTQLRLFDLSGCSK 213 (958)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~--~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~ 213 (958)
+|. +. +++|++|++..|.+.. +..++ .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~- 263 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE- 263 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-
Confidence 554 43 7899999999888762 34443 7899999998531 1 22222222 357889999998887
Q ss_pred CCc-cChhh--cCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCC
Q 002163 214 LKV-IPPNL--LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (958)
Q Consensus 214 l~~-~p~~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (958)
+.. .+..+ ...+++|++|+++.|.+...+. ......+..+++|+.|+++.|.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 432 11111 1357889999998877651110 12233445678899999887754
No 151
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.14 E-value=3.2e-07 Score=105.71 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=47.3
Q ss_pred cceeccc--cccCC---cccHHHHHHHHHHHHHHHhhCCccccCC--CCCcEEechhHHHHHHHHHhcCC
Q 002163 4 LKYGTGL--HIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (958)
Q Consensus 4 i~~Wiae--G~i~~---~~~~e~~~~~~~~~~~~L~~~~l~q~~~--~~~~~~mHDli~dla~~i~~~e~ 66 (958)
|++|+|+ ||+.. +.+++++++ | |++|++|||||..+ +...|+|||+|||+|+.++++++
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~---l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-R---LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-H---HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-H---HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6789999 99974 457888888 7 99999999999653 45689999999999999988765
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=3.3e-05 Score=85.06 Aligned_cols=309 Identities=13% Similarity=0.110 Sum_probs=162.0
Q ss_pred CcChhhhcCCCCCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCc-hhhc
Q 002163 123 KIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMA 198 (958)
Q Consensus 123 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~ 198 (958)
.+....|.++++|+.+.+.. .++.+++ +|.++.+|+.+++..+ ++.+ ..+..+.+|+.+.+..+ +..++ ..+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 46677899999999999975 4777754 7999999999999765 5544 56778888888776643 44443 3455
Q ss_pred CCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeeccCCccCCC
Q 002163 199 QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (958)
Q Consensus 199 ~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (958)
....+....... ...+....+.++.+|+.+.+.++... .....+.++.+|+.+.+..+ +..++.
T Consensus 138 ~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 138 GCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred cccccccccCcc---ccccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCCC-ceEeCc
Confidence 554444333322 45566666889999999998654322 12345667777777766533 233332
Q ss_pred cc--ccccccEEEEEecCccccccccCCceEEEecccccChHHHHHhhccccEEEccccCCccccccccccccccccceE
Q 002163 279 GL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHL 356 (958)
Q Consensus 279 ~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L 356 (958)
.+ ....|+.+.+.... .. +........+|+.+.+... ... +....+..+..|+.+
T Consensus 202 ~~F~~~~~L~~i~~~~~~-----------~~---------i~~~~~~~~~l~~i~ip~~--~~~-i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSL-----------YY---------LGDFALSKTGVKNIIIPDS--FTE-LGKSVFYGCTDLESI 258 (394)
T ss_dssp TTTTTCTTCCBCCCCTTC-----------CE---------ECTTTTTTCCCCEEEECTT--CCE-ECSSTTTTCSSCCEE
T ss_pred hhhccccccceeecCCCc-----------eE---------eehhhcccCCCceEEECCC--cee-cccccccccccceeE
Confidence 22 22223322111000 00 0000111345566655331 111 222223556667776
Q ss_pred eeccCCCeeEEecCCcccccccccccchhhccccccccceeccCCCchhccCccEEEEecCCCcccccchhhhhccCCce
Q 002163 357 HVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQ 436 (958)
Q Consensus 357 ~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 436 (958)
.+.... ..+.. ......+.++....... .+ +......+.+|+.+.+.+ +++.+.. ..+.++.+|+
T Consensus 259 ~~~~~~--~~i~~----~~F~~~~~l~~~~~~~~----~i--~~~~F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~ 323 (394)
T 4fs7_A 259 SIQNNK--LRIGG----SLFYNCSGLKKVIYGSV----IV--PEKTFYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLV 323 (394)
T ss_dssp EECCTT--CEECS----CTTTTCTTCCEEEECSS----EE--CTTTTTTCTTCCEEEECT--TCCEECT-TTTTTCTTCC
T ss_pred EcCCCc--ceeec----cccccccccceeccCce----ee--cccccccccccccccccc--ccceech-hhhcCCCCCC
Confidence 665432 11211 11122223333222210 01 111122456677777753 4555544 3466777777
Q ss_pred EEEeeccccccccccccccCCccCCccCceeccccceEecCCCcccccccccccchhhcccccceecccC
Q 002163 437 TLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHT 506 (958)
Q Consensus 437 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 506 (958)
.+.+.+ .++.+.. .....+.+|+.+.+.. +++.+.. ..+.++++|+++.+..
T Consensus 324 ~i~lp~--~v~~I~~-----------~aF~~c~~L~~i~lp~--~l~~I~~---~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 324 SIDLPY--LVEEIGK-----------RSFRGCTSLSNINFPL--SLRKIGA---NAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCT--TCCEECT-----------TTTTTCTTCCEECCCT--TCCEECT---TTBTTCTTCCEEEEEG
T ss_pred EEEeCC--cccEEhH-----------HhccCCCCCCEEEECc--cccEehH---HHhhCCCCCCEEEECC
Confidence 777743 3444431 1223445666666642 2444433 2356667777776654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=3.7e-06 Score=81.38 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=59.0
Q ss_pred hhcCCCCCcEEEeeCc-cCc-----cCCcccCCCCCCCEEEccCCCCCC-----c-cccCCCCCccEEEccCCCCCC---
Q 002163 128 VFAGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ--- 192 (958)
Q Consensus 128 ~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~--- 192 (958)
.+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ + ..+...++|++|++++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666666666666 554 234455556667777777666652 1 334444566666666666552
Q ss_pred --CchhhcCCCCCCEEec--cCCCCCCcc-----ChhhcCCCCCCCEEEeeCCcc
Q 002163 193 --LPEEMAQLTQLRLFDL--SGCSKLKVI-----PPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 193 --lp~~i~~L~~L~~L~l--~~~~~l~~~-----p~~~i~~L~~L~~L~l~~~~~ 238 (958)
+...+...++|++|++ ++|. +..- ... +...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 3445555566666666 4454 4321 111 33345555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=1.4e-05 Score=85.82 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=101.4
Q ss_pred cCCCcCEEEeecCCCe----------ecCCCC-CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCcc-CCcc
Q 002163 84 MLKNCPTIFLHDCKHW----------EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSL 151 (958)
Q Consensus 84 ~~~~~r~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~ 151 (958)
.++++|.|.+.....+ .+...+ .+|+|+.|.+.++... .++. +. +++|+.|++..+.+.. ....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHH
Confidence 3579999999654321 111112 6799999999887422 3443 33 8899999999888652 1123
Q ss_pred c--CCCCCCCEEEccCC--C------CCCc-ccc--CCCCCccEEEccCCCCCC-Cchhh---cCCCCCCEEeccCCCCC
Q 002163 152 F--HLPLNLQTLCLDRC--A------LGDI-AII--GNLKKLEILSLVDSNIEQ-LPEEM---AQLTQLRLFDLSGCSKL 214 (958)
Q Consensus 152 i--~~l~~Lr~L~L~~~--~------l~~l-~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l 214 (958)
+ ..+++|++|+|+.+ . +..+ ..+ +.+++|++|++++|.+.. .+..+ ..+++|++|+++.|. +
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-L 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-C
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-C
Confidence 3 37899999998632 1 2122 122 358999999999998762 23333 358899999999887 6
Q ss_pred Cc-----cChhhcCCCCCCCEEEeeCCccc
Q 002163 215 KV-----IPPNLLSGLSRLEDLYMGNTSVK 239 (958)
Q Consensus 215 ~~-----~p~~~i~~L~~L~~L~l~~~~~~ 239 (958)
.+ ++.+ +..+++|+.|+++.|.+.
T Consensus 292 ~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 65 3333 356799999999998765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=1.2e-05 Score=77.67 Aligned_cols=107 Identities=10% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCCCccEEEcCCC-cCCCC---cChhhhcCCCCCcEEEeeCccCc-----cCCcccCCCCCCCEEEccCCCCCC-----c
Q 002163 106 EYPQLEFFCMSPR-DHSIK---IPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I 171 (958)
Q Consensus 106 ~~~~L~~L~l~~~-~~~~~---~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l 171 (958)
..+.|++|++++| .+... .....+...+.|++|+|++|.+. .+.+.+...++|++|+|++|.|.+ +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4678888888887 65421 11233567788999999999876 245566677889999999999883 3
Q ss_pred -cccCCCCCccEEEc--cCCCCCC-----CchhhcCCCCCCEEeccCCC
Q 002163 172 -AIIGNLKKLEILSL--VDSNIEQ-----LPEEMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 172 -~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 212 (958)
..+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 66778889999999 7788873 45667778999999999886
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=2.6e-05 Score=79.21 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCCCCCEEEccCCCCCCccc----cCCCCCccEEEccCCCCCCCchhhcCCC--CCCEEeccCCC
Q 002163 154 LPLNLQTLCLDRCALGDIAI----IGNLKKLEILSLVDSNIEQLPEEMAQLT--QLRLFDLSGCS 212 (958)
Q Consensus 154 ~l~~Lr~L~L~~~~l~~l~~----i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~ 212 (958)
++++|++|+|++|.++.+.. +..+++|++|+|++|.++.+. .+..+. +|++|++++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 34455555555555544322 224555555555555555442 233333 55555555555
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0033 Score=68.91 Aligned_cols=121 Identities=11% Similarity=0.220 Sum_probs=74.3
Q ss_pred CccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCcc---CccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccE
Q 002163 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ---FLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (958)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (958)
.|+++.+..+ +. .+....|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.+ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4777777543 22 5666778888888888887653 55554 36677777777666543 3333 45666777777
Q ss_pred EEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCC
Q 002163 183 LSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 183 L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (958)
+.+.. .+..++ ..+..+.+|+.+.+..+ +..+....+.. .+|+.+.+...
T Consensus 142 i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 142 VTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT
T ss_pred ccccc-eeeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCc
Confidence 77754 344443 34666777777777653 55666554443 46777766543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=0.00016 Score=73.42 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=42.5
Q ss_pred cCCCCCcEEEeeCccCccC---CcccCCCCCCCEEEccCCCCCCccccCCCC--CccEEEccCCCCC-CCc-------hh
Q 002163 130 AGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDRCALGDIAIIGNLK--KLEILSLVDSNIE-QLP-------EE 196 (958)
Q Consensus 130 ~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~--~L~~L~l~~~~l~-~lp-------~~ 196 (958)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|.++.+..+..+. +|++|++++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3455666666666665543 234455666666666666666554444444 6666666666554 233 12
Q ss_pred hcCCCCCCEEe
Q 002163 197 MAQLTQLRLFD 207 (958)
Q Consensus 197 i~~L~~L~~L~ 207 (958)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.13 E-value=0.022 Score=62.26 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=56.2
Q ss_pred ccCCCCCCCEEEccCCCCCC-ccccCCCCCccEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCCCccChhhcCCCCCC
Q 002163 151 LFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (958)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~-l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L 228 (958)
+|..+.+|+.+.+....... -..+.++.+|+.+.+.. .++.++. .|.++.+|+.+++..+ ++.++...+.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 45556666666665433221 14455566666666642 4455543 4555666666666542 555655556666666
Q ss_pred CEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEeecc
Q 002163 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (958)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (958)
+.+.+..+ +. ......+.++++|+.+.+.++
T Consensus 337 ~~i~ip~s-v~-----------~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VT-----------KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CC-----------BCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cC-----------EEhHhHhhCCCCCCEEEECCc
Confidence 66665432 11 122345566666666666543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.32 E-value=0.1 Score=56.59 Aligned_cols=129 Identities=14% Similarity=0.232 Sum_probs=78.4
Q ss_pred ChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccEEEccCCCCCCCch-hhcCC
Q 002163 125 PNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQL 200 (958)
Q Consensus 125 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L 200 (958)
....|.....|+.+.+..+ +..++ .++..+.+|+.+.+..+ ++.+ ..+.++.+|+.+.+.. +++.++. .+..+
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccc
Confidence 3344566667777776544 33332 35666777777777554 4433 4556667777777754 3555543 46677
Q ss_pred CCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcccccccccccCCCcCChhhhcCCCCCCEEEee
Q 002163 201 TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (958)
Q Consensus 201 ~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (958)
.+|+.+.+.++. ++.++...+.++.+|+.+.+..+ +. ......+.++++|+.+.+.
T Consensus 286 ~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-----------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-----------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-----------EECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-----------EEHHHHhhCCCCCCEEEEC
Confidence 777777777665 67777766777777777777543 21 1123456666677766664
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.68 E-value=0.18 Score=54.57 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=97.2
Q ss_pred CCCCccEEEcCCCcCCCCcChhhhcCCCCCcEEEeeCccCccCC-cccCCCCCCCEEEccCCCCCCc--cccCCCCCccE
Q 002163 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (958)
Q Consensus 106 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (958)
.+..++.+.+..+- ..+....|.++..|+.+.+..+ ++.+. .++.++.+|+.+.+..+ +..+ ..+..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 56788888876542 2466677888999999998765 55554 47788899999998654 4433 56788999999
Q ss_pred EEccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCC
Q 002163 183 LSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (958)
Q Consensus 183 L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (958)
+.+.++.++.++ ..|.++.+|+.+.+..+ ++.++...+.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 999988888886 46889999999999753 78888888899999999887654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.36 E-value=0.052 Score=48.20 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=39.0
Q ss_pred EEEccCCCCC--CCchhhcCCCCCCEEeccCCCCCCccChhhcCCCCCCCEEEeeCCcc
Q 002163 182 ILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (958)
Q Consensus 182 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (958)
+++.++.+++ .+|.++. .+|++|+|++|. ++.+|.+.+..+.+|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666777776 7775432 357888888887 7888877777788888888877754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.95 E-value=0.085 Score=46.78 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCcEEEeeCccCccCCc-ccCCCCCCCEEEccCCCC
Q 002163 134 NLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCAL 168 (958)
Q Consensus 134 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l 168 (958)
+|++|+|++|.|+.+|. .|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46666666666666654 455666677777776654
No 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.19 E-value=0.033 Score=66.32 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.5
Q ss_pred ccceeccccccCCcccHHHHHHHHHHHHHHHhhCCccccCCCCCcEEechhHHHHHH
Q 002163 3 LLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPTEDWIRMHDLVREVAI 59 (958)
Q Consensus 3 Li~~WiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~l~q~~~~~~~~~mHDli~dla~ 59 (958)
++.+|+++| ++.+..+ +++|+++|||+..+....|+|||+++|++.
T Consensus 392 La~LW~aeG--------eedAe~~---L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 392 LSLIWFDVI--------KSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHCSSC--------SHHHHHH---HHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhcCCC--------HHHHHHH---HHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 577898887 1234455 999999999997656678999999999763
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.93 E-value=0.05 Score=51.85 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=30.1
Q ss_pred cccCCCCCCCEEEccCCCCCC-----c-cccCCCCCccEEEccCCCCC-----CCchhhcCCCCCCEEeccCC
Q 002163 150 SLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGC 211 (958)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 211 (958)
+.+..-+.|+.|+|++|.|.+ + ..+..=+.|++|+|++|.|. .+-+.+..-+.|++|+++++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334444555555555555542 1 22333355555566555554 12233444455666666543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.30 E-value=0.1 Score=49.75 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=19.2
Q ss_pred ccCCCCCccEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 002163 173 IIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCS 212 (958)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 212 (958)
.+..=+.|+.|+|++|.|. .+-+.+..-+.|++|+|+.|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3344455555555555543 222334444555555555554
No 167
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.91 E-value=0.098 Score=66.91 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhCCccccCC--CCCcEEechhHHHHHHHHHhcC
Q 002163 21 ETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRD 65 (958)
Q Consensus 21 ~~~~~~~~~~~~L~~~~l~q~~~--~~~~~~mHDli~dla~~i~~~e 65 (958)
+.++.+ +++|+++||++... +...|+|||+||++|+..+.+|
T Consensus 409 ~~~~~~---l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDI---LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHH---HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHH---HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 334445 99999999999643 3346999999999999998766
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=75.99 E-value=1.3 Score=51.11 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCccccC--CCCCcEEechhHHHHHHHHH
Q 002163 27 YALVHKLKDYCLLLDG--PTEDWIRMHDLVREVAISIA 62 (958)
Q Consensus 27 ~~~~~~L~~~~l~q~~--~~~~~~~mHDli~dla~~i~ 62 (958)
..++++|+++|||+.. +....|.|||++|+++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 3349999999999853 23357999999999999874
Done!