BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002164
(958 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 102/277 (36%), Gaps = 38/277 (13%)
Query: 624 ITDFPHPYPQLASLQK--ELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
+ D HPY + Q+ E DG L+ ++ P G+DP+K P+ + P
Sbjct: 470 LADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPAS 529
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFXXXX 739
D+ +P G +LA+ G+ + + G F
Sbjct: 530 QTVTDS----------WPGRGDHLFNQYLAQQGYVVFS-----LDNRGTPRRGRDFGGAL 574
Query: 740 XXXXXXXXXXXXRRGVA--------HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791
RGVA P++I V G S G +MT LLA A + CG+A +
Sbjct: 575 YGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGA 634
Query: 792 -----GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846
G Y+ T R + Y E L+ P+LL+HG D+N
Sbjct: 635 PVTDWGLYDSHYTERYMDLPARN----DAGYREARVLTHIEGLRSPLLLIHGMADDN--V 688
Query: 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
L S +AL+ G L+ P HG + +++
Sbjct: 689 LFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADAL 725
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ DAA ++ N + ST ++ A
Sbjct: 492 MILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL----NWATYLASTENII-----VAS 541
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G ++A+ G SYG ++T+
Sbjct: 542 FDGRGSGYQGDKIMHAINKRLGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTS 601
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 602 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 657
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 658 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTAHQHI 715
Query: 887 LWETDRWLQKYCVS 900
+LQ+ C S
Sbjct: 716 YSHMSHFLQQ-CFS 728
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G+SYG +MT L P LF G+A + + L+ F+N L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + NNS T R L G I+P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQ--NNSRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G+SYG +MT L P LF G+A + + L+ F+N L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + N+S T R L G I+P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQ--NDSRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G+SYG +MT L P LF G+A + + L+ F+N L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + N+S T R L G I+P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQ--NDSRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G+SYG +MT L P LF G+A + + L+ F+N L +
Sbjct: 417 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 476
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + N+S T R L G I+P
Sbjct: 477 REIMRSRSPINHVDRIKEPLALIHPQ--NDSRTPLKPLLRLMGELLARGKTFEAHIIPDA 534
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 535 GHAINTMEDAVKIL 548
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 99/262 (37%), Gaps = 28/262 (10%)
Query: 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708
G + + LPP +D SK PL ++ P S+ R S + + ST ++
Sbjct: 483 GTKFWYQMILPPHFDKSKKYPLLIEVYAGPC---SQKVDTVFRLSWATY--LASTENII- 536
Query: 709 LARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHS 767
A G + G+ A N R + G +IA+ G S
Sbjct: 537 ----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWS 592
Query: 768 YGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEM 820
YG ++T+ +L +F CGIA + Y+ T G + L Y
Sbjct: 593 YGGYVTSMVLGAGSGVFKCGIAVAPVSKWEYYDSVYTERYMGLPTPEDNL-----DYYRN 647
Query: 821 SPFMSANKLKKPI--LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
S MS + K + LL+HG D+N QS + AL G + + E HG A
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQLSKALVDAGVDFQTMWYTDEDHGIA 705
Query: 879 ARESIMHVLWETDRWLQKYCVS 900
+ + H+ +L++ C S
Sbjct: 706 SNMAHQHIYTHMSHFLKQ-CFS 726
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G++YG +MT L P LF G+A + + L+ F+N L +
Sbjct: 437 SELYIMGYAYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + N+S T R L G I+P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQ--NDSRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEAT 814
S++ + G+SYG +MT L P LF G+A + + L+ F+N L +
Sbjct: 437 SELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGS 496
Query: 815 STYVE-MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ SP +++K+P+ L+H + N S T R L G I+P
Sbjct: 497 REIMRSRSPINHVDRIKEPLALIHPQ--NASRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 874 SHGYAARESIMHVL 887
H E + +L
Sbjct: 555 GHAINTMEDAVKIL 568
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 474 LQNVQMPSKKLDFIILAETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 531
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 532 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 583
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 584 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 643
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 644 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 697
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 698 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 734
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 474 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 531
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 532 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 583
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 584 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 643
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 644 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 697
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 698 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 734
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 496 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 545
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 546 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 605
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 606 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 661
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 662 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 719
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 720 YTHMSHFIKQ-CFS 732
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 476 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 533
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 534 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 585
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 586 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 645
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 646 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 699
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 700 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 736
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 478 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 535
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 536 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 587
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 588 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 647
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 648 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 701
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 702 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 738
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 524 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 575
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 576 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 635
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 636 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 689
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 690 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 498 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 547
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 548 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 607
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 608 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 663
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 664 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 721
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 722 YTHMSHFIKQ-CFS 734
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 467 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 524
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 525 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 576
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 577 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 636
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 637 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 690
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 691 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 727
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 539
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 540 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 599
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 600 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 655
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 656 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 713
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 714 YTHMSHFIKQ-CFS 726
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 492 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 541
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 542 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 601
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 602 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 657
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 658 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 715
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 716 YTHMSHFIKQ-CFS 728
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 504 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 561
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 562 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 613
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 614 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 673
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 674 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 727
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 728 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 764
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 539
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 540 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 599
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 600 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 655
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 656 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 713
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 714 YTHMSHFIKQ-CFS 726
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN------ED 807
G A +++AV G S G + A+ L ++ CG L G+ + E
Sbjct: 498 GTADRARLAVRGGSAGGWTAASSLVST-DVYACGTV----LYPVLDLLGWADGGTHDFES 552
Query: 808 RTL-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
R L E Y + +P A++++ P LL+ G ED Q DRF A+ G
Sbjct: 553 RYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVC--PPEQCDRFLEAVAG 610
Query: 861 HGALCRLVILPFESHGYAARESIMHVL 887
G + E HG+ +E+ + L
Sbjct: 611 CGVPHAYLSFEGEGHGFRRKETXVRAL 637
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 493 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 542
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 543 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 602
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 603 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 658
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 659 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 716
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 717 YTHMSHFIKQ-CFS 729
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 477 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 534
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 535 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 586
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 587 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 646
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 647 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 700
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 701 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 737
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y + +P A++++ P LL+ G ED Q DRF A+ G G + E HG
Sbjct: 569 YRDRAPLTRADRVRVPFLLLQGLEDPVC--PPEQCDRFLEAVAGCGVPHAYLSFEGEGHG 626
Query: 877 YAARESIMHVL 887
+ +E+++ L
Sbjct: 627 FRRKETMVRAL 637
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 524 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 575
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 576 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 635
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 636 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 689
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 690 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 466 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 523
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 524 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 575
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 576 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 635
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 636 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 689
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 690 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 493 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 542
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 543 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 602
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 603 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 658
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 659 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 716
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 717 YTHMSHFIKQ-CFS 729
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ D ++ N + ST ++ A
Sbjct: 490 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL----NWATYLASTENII-----VAS 539
Query: 716 LGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A N R + G +IA+ G SYG ++T+
Sbjct: 540 FDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTS 599
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPFMSAN 827
+L +F CGIA R Y+ T G + L Y + A
Sbjct: 600 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVMSRAE 655
Query: 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
K+ LL+HG D+N QS + AL G + + E HG A+ + H+
Sbjct: 656 NFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHI 713
Query: 887 LWETDRWLQKYCVS 900
++++ C S
Sbjct: 714 YTHMSHFIKQ-CFS 726
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 15/157 (9%)
Query: 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQ 804
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 577 KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 636
Query: 805 NEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 637 TPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVGV 690
Query: 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 691 DFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 726
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 637 LQKELIKYQRKDGVQLSAT-----LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
LQ + ++ D + L+ T + LPP +D SK PL ++ P K+ D ++
Sbjct: 471 LQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DTVFRL- 528
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-NDRFXXXXXXXXXXXXXXX 750
N + ST ++ A G + G+ A N R
Sbjct: 529 ---NWATYLASTENII-----VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 580
Query: 751 XRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGF 803
+ G +IA+ G SYG ++T+ +L +F CGIA R Y+ T G
Sbjct: 581 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGL 640
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ L Y + A K+ LL+HG D+N QS + AL G
Sbjct: 641 PTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDVG 694
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900
+ + E HG A+ + H+ ++++ C S
Sbjct: 695 VDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ-CFS 731
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 77/224 (34%), Gaps = 39/224 (17%)
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
L KE IK D + L + LPP +D SK PL QV G P
Sbjct: 465 LPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLI----------------QVYGGPCS 508
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXX--------XXXXXX 748
+ S + W++ + G + G G D+
Sbjct: 509 -QSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVR 567
Query: 749 XXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA---------RSGAYNRTLT 799
G +IA+ G SYG ++++ LA LF CGIA + Y
Sbjct: 568 KFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFM 627
Query: 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
++++ ++ ++ F + + LL+HG D+N
Sbjct: 628 GLPTKDDNLEHYKNSTVMARAEYFRNVD-----YLLIHGTADDN 666
>pdb|3S9J|A Chain A, Crystal Structure Of A Member Of Duf4221 Family (Bvu_1028)
From Bacteroides Vulgatus Atcc 8482 At 1.75 A Resolution
Length = 369
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 295 FQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISS---- 350
F++ K YD +FD + L T G PAV+ S PSPD +YIL++
Sbjct: 44 FENTQKSLYDIVIFDIENQQIAKRIPLHKTGPN-GLPAVFGS-RPSPDSQYILVAQNNIS 101
Query: 351 ----------IHRPYSFIVPCGRF-PRQVGVWTTDGIFVRELC 382
I R Y+F P GRF P G + F+++ C
Sbjct: 102 RLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSC 144
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA--YNRTLTPFGFQNEDRTLWEATSTY 817
+I V G SYG FMT NL+ +F G+A +NR +G + D E Y
Sbjct: 570 RIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQ-ENPEGY 628
Query: 818 VEMSPFMSANKLKKPILLVHGEED 841
+ A LK ++L+HG D
Sbjct: 629 DAANLLKRAGDLKGRLMLIHGAID 652
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA--YNRTLTPFGFQNEDRTLWEATSTY 817
+I V G SYG FMT NL+ +F G+A +NR +G + D E Y
Sbjct: 570 RIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQ-ENPEGY 628
Query: 818 VEMSPFMSANKLKKPILLVHGEED 841
+ A LK ++L+HG D
Sbjct: 629 DAANLLKRAGDLKGRLMLIHGAID 652
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA--YNRTLTPFGFQNEDRTLWEATSTY 817
+I V G +YG FMT NL+ +F G+A +NR +G + D E Y
Sbjct: 570 RIGVHGWAYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQ-ENPEGY 628
Query: 818 VEMSPFMSANKLKKPILLVHGEED 841
+ A LK ++L+HG D
Sbjct: 629 DAANLLKRAGDLKGRLMLIHGAID 652
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 645 QRKDGVQLSATLYLPPGYD--------PSKD------GPLPCLFWSYPGEFKSKDAAGQV 690
Q + G L A +LPP +D P KD + ++ + P +F++ +V
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 691 RGSP--NEFPRIGSTSVLLWLARGFAILGGPTTPII-GEGDE 729
E+P++G+T L+WL RG + I GE DE
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDE 118
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 170 LFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSI 207
L +G LG+ + + FP G K+NF+TW + LAF +
Sbjct: 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIV 44
>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group
Length = 161
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 206 SIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255
S++ID D+ S + +V V T P FQSP+ + ++FVW++++
Sbjct: 11 SLQIDIPDALSERDKVKFT-VHTKTTLPTFQSPEFSVTRQHEDFVWLHDT 59
>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group
Length = 161
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 206 SIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255
S++ID D+ S + +V V T P FQSP+ + ++FVW++++
Sbjct: 11 SLQIDIPDALSERDKVKFT-VHTKTTLPTFQSPEFSVTRQHEDFVWLHDT 59
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 371 WTTDGIFVRELCDL--PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427
W DG V+ L L P++E I F S++ RS R YW + +DGG+ ++
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR-------YWCQVEDGGETEI 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,859,975
Number of Sequences: 62578
Number of extensions: 1298675
Number of successful extensions: 2715
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2674
Number of HSP's gapped (non-prelim): 50
length of query: 958
length of database: 14,973,337
effective HSP length: 108
effective length of query: 850
effective length of database: 8,214,913
effective search space: 6982676050
effective search space used: 6982676050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)