Query 002164
Match_columns 958
No_of_seqs 633 out of 4331
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 17:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 4.4E-44 9.6E-49 419.7 51.5 599 102-900 6-619 (620)
2 PRK10115 protease 2; Provision 100.0 7.8E-41 1.7E-45 393.5 54.5 524 190-900 128-678 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 4.9E-30 1.1E-34 302.0 49.3 325 551-899 413-749 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 1.7E-31 3.7E-36 284.1 33.0 350 520-896 498-866 (867)
5 COG1770 PtrB Protease II [Amin 100.0 1.2E-26 2.5E-31 252.4 49.2 302 550-877 338-657 (682)
6 PF00326 Peptidase_S9: Prolyl 99.9 2.7E-27 5.8E-32 242.8 15.6 195 704-900 6-212 (213)
7 PRK01029 tolB translocation pr 99.9 5E-24 1.1E-28 239.4 29.3 285 102-521 130-426 (428)
8 PRK03629 tolB translocation pr 99.9 1.3E-22 2.7E-27 229.3 29.5 228 163-491 179-408 (429)
9 PRK05137 tolB translocation pr 99.9 1.2E-22 2.5E-27 231.3 29.1 229 163-491 182-414 (435)
10 PRK01029 tolB translocation pr 99.9 1.8E-22 3.8E-27 226.9 29.4 265 194-572 142-415 (428)
11 COG1505 Serine proteases of th 99.9 1.2E-21 2.7E-26 210.5 34.0 288 591-898 347-647 (648)
12 PRK04043 tolB translocation pr 99.9 3.8E-22 8.3E-27 222.2 28.7 231 163-491 169-402 (419)
13 COG4946 Uncharacterized protei 99.9 1.9E-21 4.1E-26 199.9 27.7 370 164-608 60-513 (668)
14 PRK02889 tolB translocation pr 99.9 1.1E-21 2.4E-26 222.0 28.9 228 163-491 176-405 (427)
15 PRK04792 tolB translocation pr 99.9 1.8E-21 3.8E-26 220.7 29.8 228 163-491 198-427 (448)
16 PRK04922 tolB translocation pr 99.9 1.4E-21 3E-26 222.1 28.0 228 163-491 184-413 (433)
17 PRK05137 tolB translocation pr 99.9 3.2E-21 6.9E-26 219.5 30.1 255 200-569 165-421 (435)
18 PRK03629 tolB translocation pr 99.9 4.8E-21 1E-25 216.4 30.9 252 201-571 164-417 (429)
19 KOG2237 Predicted serine prote 99.9 8.3E-20 1.8E-24 197.3 38.3 288 594-898 392-706 (712)
20 KOG0293 WD40 repeat-containing 99.9 6.3E-23 1.4E-27 207.4 11.4 327 13-487 152-513 (519)
21 PRK00178 tolB translocation pr 99.9 9.6E-21 2.1E-25 216.2 30.3 227 164-491 180-408 (430)
22 PRK04043 tolB translocation pr 99.9 1.8E-20 3.9E-25 208.9 28.7 250 201-572 155-412 (419)
23 PRK01742 tolB translocation pr 99.9 2.3E-20 4.9E-25 211.7 28.0 220 163-490 184-405 (429)
24 PRK04792 tolB translocation pr 99.9 7E-20 1.5E-24 207.7 31.1 252 201-571 183-436 (448)
25 PRK02889 tolB translocation pr 99.9 5.2E-20 1.1E-24 208.4 30.0 249 201-571 164-414 (427)
26 PRK04922 tolB translocation pr 99.9 5.3E-20 1.2E-24 209.1 30.1 254 200-571 167-422 (433)
27 PRK00178 tolB translocation pr 99.9 1.4E-19 3E-24 206.6 30.2 254 199-570 161-416 (430)
28 PRK10566 esterase; Provisional 99.8 2.7E-19 5.9E-24 188.7 23.7 219 651-898 11-249 (249)
29 KOG1455 Lysophospholipase [Lip 99.8 1.7E-19 3.8E-24 179.8 20.4 233 639-897 27-312 (313)
30 PLN02298 hydrolase, alpha/beta 99.8 7.4E-19 1.6E-23 193.4 25.8 244 633-901 26-321 (330)
31 PRK01742 tolB translocation pr 99.8 5.1E-19 1.1E-23 200.6 24.1 221 110-466 205-426 (429)
32 PRK13604 luxD acyl transferase 99.8 5.3E-19 1.2E-23 183.0 20.5 208 641-878 11-246 (307)
33 PF05448 AXE1: Acetyl xylan es 99.8 8.9E-19 1.9E-23 186.8 19.8 232 635-897 52-320 (320)
34 PRK05077 frsA fermentation/res 99.8 2.5E-18 5.4E-23 192.0 23.8 230 636-898 165-413 (414)
35 TIGR02821 fghA_ester_D S-formy 99.8 4.6E-18 1E-22 180.8 23.2 237 639-897 13-274 (275)
36 PF01738 DLH: Dienelactone hyd 99.8 1.7E-18 3.7E-23 178.0 18.5 201 652-898 1-218 (218)
37 TIGR02800 propeller_TolB tol-p 99.8 2E-17 4.4E-22 188.8 29.2 228 163-491 170-399 (417)
38 PLN02385 hydrolase; alpha/beta 99.8 7.9E-18 1.7E-22 186.3 24.6 234 640-899 62-347 (349)
39 PLN02442 S-formylglutathione h 99.8 5.4E-18 1.2E-22 180.4 22.3 239 638-898 17-281 (283)
40 PHA02857 monoglyceride lipase; 99.8 1.3E-17 2.9E-22 178.8 23.9 223 644-897 5-273 (276)
41 PF00930 DPPIV_N: Dipeptidyl p 99.8 1.3E-17 2.9E-22 183.9 24.1 322 117-529 1-347 (353)
42 KOG4391 Predicted alpha/beta h 99.8 3E-18 6.6E-23 159.8 14.3 238 629-900 44-285 (300)
43 TIGR02800 propeller_TolB tol-p 99.8 1.1E-16 2.5E-21 182.7 29.3 253 198-570 153-407 (417)
44 PRK10749 lysophospholipase L2; 99.8 4.4E-17 9.6E-22 178.6 24.4 230 639-897 30-329 (330)
45 COG0412 Dienelactone hydrolase 99.8 5.1E-17 1.1E-21 166.2 22.9 212 640-899 3-235 (236)
46 KOG1552 Predicted alpha/beta h 99.8 1.4E-17 3E-22 163.3 16.4 219 638-898 34-253 (258)
47 PF00930 DPPIV_N: Dipeptidyl p 99.8 2.7E-16 5.8E-21 173.6 26.8 302 197-609 1-353 (353)
48 PRK10162 acetyl esterase; Prov 99.7 1.9E-16 4.2E-21 171.6 22.4 231 638-899 56-317 (318)
49 PRK05371 x-prolyl-dipeptidyl a 99.7 4.6E-16 1E-20 184.8 27.3 193 703-902 270-524 (767)
50 PLN02652 hydrolase; alpha/beta 99.7 4.4E-16 9.5E-21 172.3 24.8 231 639-899 110-389 (395)
51 KOG0271 Notchless-like WD40 re 99.7 4E-16 8.7E-21 157.1 20.3 325 111-599 118-467 (480)
52 COG0823 TolB Periplasmic compo 99.7 6.8E-16 1.5E-20 170.4 22.0 230 163-491 173-404 (425)
53 COG3458 Acetyl esterase (deace 99.7 1.6E-16 3.5E-21 154.5 14.6 231 637-897 54-317 (321)
54 COG4946 Uncharacterized protei 99.7 1.4E-14 3E-19 149.8 28.4 169 312-530 339-509 (668)
55 COG0823 TolB Periplasmic compo 99.7 4.9E-15 1.1E-19 163.6 24.8 229 201-528 158-388 (425)
56 COG2267 PldB Lysophospholipase 99.7 5.7E-15 1.2E-19 157.1 22.4 231 640-899 10-296 (298)
57 PF14583 Pectate_lyase22: Olig 99.7 4.9E-14 1.1E-18 148.2 28.8 326 190-618 37-384 (386)
58 PRK11460 putative hydrolase; P 99.7 6.5E-15 1.4E-19 151.8 21.6 130 738-900 82-211 (232)
59 COG1647 Esterase/lipase [Gener 99.7 2.1E-15 4.6E-20 143.0 15.7 198 671-895 16-242 (243)
60 TIGR00976 /NonD putative hydro 99.7 3.7E-15 8.1E-20 174.2 20.3 233 644-902 1-308 (550)
61 PF12715 Abhydrolase_7: Abhydr 99.6 8.2E-16 1.8E-20 160.6 11.5 218 634-872 83-343 (390)
62 KOG1515 Arylacetamide deacetyl 99.6 2.2E-14 4.8E-19 151.7 21.7 233 639-897 63-335 (336)
63 PF02129 Peptidase_S15: X-Pro 99.6 9.8E-15 2.1E-19 155.2 18.3 213 648-876 1-271 (272)
64 TIGR01840 esterase_phb esteras 99.6 5.7E-15 1.2E-19 150.8 15.9 189 654-861 1-197 (212)
65 PF14583 Pectate_lyase22: Olig 99.6 3E-13 6.5E-18 142.4 28.1 313 110-529 37-370 (386)
66 COG0657 Aes Esterase/lipase [L 99.6 3.9E-14 8.4E-19 154.3 21.0 225 645-896 57-309 (312)
67 PF06500 DUF1100: Alpha/beta h 99.6 1.7E-14 3.6E-19 154.1 17.0 229 634-898 160-410 (411)
68 TIGR03100 hydr1_PEP hydrolase, 99.6 9.2E-14 2E-18 147.8 22.4 230 640-896 3-274 (274)
69 TIGR01607 PST-A Plasmodium sub 99.6 5.8E-14 1.3E-18 153.3 20.5 236 644-895 2-331 (332)
70 COG4099 Predicted peptidase [G 99.6 1.8E-14 3.8E-19 141.6 11.8 184 645-871 167-354 (387)
71 KOG0272 U4/U6 small nuclear ri 99.6 5.3E-14 1.2E-18 144.1 15.6 274 104-485 171-458 (459)
72 PF07859 Abhydrolase_3: alpha/ 99.6 1.9E-14 4.1E-19 147.5 11.7 180 673-877 1-209 (211)
73 PF12695 Abhydrolase_5: Alpha/ 99.6 9.9E-14 2.1E-18 132.8 15.7 145 672-876 1-145 (145)
74 COG2945 Predicted hydrolase of 99.5 8E-14 1.7E-18 129.3 13.7 202 639-895 4-205 (210)
75 KOG0271 Notchless-like WD40 re 99.5 2.7E-13 5.9E-18 137.0 18.0 286 110-528 159-470 (480)
76 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.3E-11 2.8E-16 134.2 33.0 269 163-569 11-288 (300)
77 PLN02511 hydrolase 99.5 1.9E-13 4.2E-18 152.3 18.3 236 639-901 71-369 (388)
78 PF02230 Abhydrolase_2: Phosph 99.5 8.6E-13 1.9E-17 135.1 21.5 130 739-898 86-216 (216)
79 TIGR03343 biphenyl_bphD 2-hydr 99.5 1.1E-13 2.4E-18 149.0 15.1 198 670-895 30-281 (282)
80 TIGR03611 RutD pyrimidine util 99.5 3.5E-13 7.6E-18 142.8 18.4 194 670-895 13-256 (257)
81 KOG0318 WD40 repeat stress pro 99.5 5.3E-11 1.1E-15 125.6 33.3 211 109-351 104-340 (603)
82 PF10503 Esterase_phd: Esteras 99.5 2.6E-13 5.6E-18 135.4 15.1 190 652-861 1-198 (220)
83 PRK00870 haloalkane dehalogena 99.5 7.3E-13 1.6E-17 143.9 20.0 225 638-897 20-301 (302)
84 KOG4178 Soluble epoxide hydrol 99.5 2.3E-12 4.9E-17 131.8 21.2 199 670-897 44-320 (322)
85 PRK10985 putative hydrolase; P 99.5 5.1E-13 1.1E-17 146.0 17.1 229 642-898 34-321 (324)
86 PLN00021 chlorophyllase 99.5 2.8E-12 6E-17 137.1 21.1 207 650-902 37-288 (313)
87 KOG0315 G-protein beta subunit 99.5 1.1E-11 2.4E-16 118.7 21.4 272 163-571 20-299 (311)
88 TIGR03056 bchO_mg_che_rel puta 99.5 3.4E-12 7.4E-17 137.1 20.5 209 647-895 13-278 (278)
89 PLN02872 triacylglycerol lipas 99.5 2.5E-12 5.5E-17 141.7 19.2 248 634-900 39-392 (395)
90 cd00200 WD40 WD40 domain, foun 99.5 2.4E-11 5.3E-16 130.1 26.5 266 110-528 11-280 (289)
91 PLN03087 BODYGUARD 1 domain co 99.5 4.5E-12 9.7E-17 142.1 21.2 221 643-896 179-478 (481)
92 PRK10673 acyl-CoA esterase; Pr 99.4 4.5E-12 9.7E-17 134.3 20.3 195 670-896 16-254 (255)
93 TIGR02427 protocat_pcaD 3-oxoa 99.4 7.6E-13 1.7E-17 139.4 14.3 193 670-894 13-250 (251)
94 COG2936 Predicted acyl esteras 99.4 1.8E-12 4E-17 143.2 17.3 240 637-899 17-319 (563)
95 PLN02824 hydrolase, alpha/beta 99.4 3.4E-12 7.3E-17 138.2 19.4 195 671-897 30-294 (294)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 7.3E-11 1.6E-15 128.2 29.9 245 111-491 33-281 (300)
97 TIGR02240 PHA_depoly_arom poly 99.4 7.2E-12 1.6E-16 134.2 20.8 212 647-898 9-267 (276)
98 TIGR01249 pro_imino_pep_1 prol 99.4 3.3E-12 7.1E-17 138.8 18.1 217 643-898 8-306 (306)
99 PLN02965 Probable pheophorbida 99.4 4.1E-12 8.9E-17 134.3 18.1 178 704-896 22-252 (255)
100 PF08840 BAAT_C: BAAT / Acyl-C 99.4 1.7E-12 3.6E-17 131.4 14.1 156 742-899 5-212 (213)
101 TIGR01836 PHA_synth_III_C poly 99.4 9.4E-12 2E-16 137.7 21.1 184 703-896 85-349 (350)
102 COG0400 Predicted esterase [Ge 99.4 1.1E-11 2.3E-16 122.4 18.8 129 738-898 78-206 (207)
103 PLN02894 hydrolase, alpha/beta 99.4 1.3E-11 2.8E-16 138.3 21.9 204 670-902 105-390 (402)
104 PRK03592 haloalkane dehalogena 99.4 9.1E-12 2E-16 134.9 19.1 210 648-898 15-290 (295)
105 TIGR03695 menH_SHCHC 2-succiny 99.4 4.5E-12 9.7E-17 133.3 16.1 195 671-894 2-250 (251)
106 PRK11071 esterase YqiA; Provis 99.4 1.5E-11 3.3E-16 122.2 18.8 177 671-895 2-189 (190)
107 KOG0315 G-protein beta subunit 99.4 8.3E-11 1.8E-15 112.8 22.4 270 217-623 18-294 (311)
108 KOG0279 G protein beta subunit 99.4 8.4E-11 1.8E-15 114.8 22.4 275 110-528 17-302 (315)
109 COG2706 3-carboxymuconate cycl 99.4 3.2E-10 6.9E-15 115.8 27.7 292 163-569 16-332 (346)
110 PLN02679 hydrolase, alpha/beta 99.4 1E-11 2.2E-16 137.8 18.6 199 670-896 88-356 (360)
111 TIGR01250 pro_imino_pep_2 prol 99.4 9.3E-12 2E-16 134.3 17.2 195 670-895 25-288 (288)
112 KOG0286 G-protein beta subunit 99.4 8.3E-11 1.8E-15 115.5 21.5 270 110-484 57-342 (343)
113 TIGR01738 bioH putative pimelo 99.4 1E-11 2.2E-16 130.3 16.3 190 670-894 4-245 (245)
114 KOG0273 Beta-transducin family 99.4 8.7E-11 1.9E-15 122.4 22.4 279 103-528 230-512 (524)
115 KOG0272 U4/U6 small nuclear ri 99.4 2.2E-11 4.8E-16 125.2 17.0 269 189-601 176-448 (459)
116 PRK03204 haloalkane dehalogena 99.4 6.5E-11 1.4E-15 127.1 21.7 173 709-894 57-285 (286)
117 PRK10439 enterobactin/ferric e 99.4 1.1E-10 2.5E-15 129.4 23.9 205 639-877 180-392 (411)
118 COG3509 LpqC Poly(3-hydroxybut 99.3 3.8E-11 8.3E-16 120.0 17.8 224 648-898 43-308 (312)
119 COG0429 Predicted hydrolase of 99.3 2.3E-11 5E-16 123.9 16.6 229 643-899 53-342 (345)
120 TIGR03101 hydr2_PEP hydrolase, 99.3 2E-10 4.4E-15 119.2 23.5 208 641-873 2-243 (266)
121 PRK07581 hypothetical protein; 99.3 2.6E-11 5.7E-16 133.9 17.9 181 707-899 66-338 (339)
122 KOG0291 WD40-repeat-containing 99.3 1.1E-09 2.3E-14 120.7 29.3 294 110-569 309-621 (893)
123 PRK14875 acetoin dehydrogenase 99.3 3.7E-11 8E-16 135.0 19.0 192 670-896 131-370 (371)
124 cd00200 WD40 WD40 domain, foun 99.3 7.5E-10 1.6E-14 118.5 27.6 245 189-569 10-258 (289)
125 KOG0291 WD40-repeat-containing 99.3 1.3E-09 2.8E-14 120.0 28.4 227 190-529 309-540 (893)
126 PF12697 Abhydrolase_6: Alpha/ 99.3 3.7E-12 8E-17 131.8 8.6 159 704-878 17-218 (228)
127 PF10282 Lactonase: Lactonase, 99.3 9.7E-10 2.1E-14 121.1 28.1 291 164-568 14-332 (345)
128 PRK06489 hypothetical protein; 99.3 7.1E-11 1.5E-15 131.3 19.1 175 710-897 103-357 (360)
129 PRK10349 carboxylesterase BioH 99.3 5.2E-11 1.1E-15 126.1 17.2 190 671-895 14-254 (256)
130 KOG1446 Histone H3 (Lys4) meth 99.3 2.4E-09 5.1E-14 107.0 26.3 253 189-571 15-273 (311)
131 KOG3043 Predicted hydrolase re 99.3 2.3E-11 5E-16 116.1 11.1 164 704-898 59-241 (242)
132 KOG0973 Histone transcription 99.3 1.4E-10 3.1E-15 133.3 19.6 145 189-416 70-237 (942)
133 PLN02578 hydrolase 99.3 1.5E-10 3.2E-15 128.3 19.3 169 710-895 110-353 (354)
134 KOG3101 Esterase D [General fu 99.3 3.6E-11 7.8E-16 112.5 11.7 209 650-878 26-263 (283)
135 KOG2055 WD40 repeat protein [G 99.3 2.5E-10 5.5E-15 118.8 19.1 259 163-528 235-501 (514)
136 KOG0279 G protein beta subunit 99.3 6E-10 1.3E-14 109.0 20.3 234 110-487 65-313 (315)
137 PRK11028 6-phosphogluconolacto 99.3 4.8E-09 1E-13 115.5 30.5 264 163-528 12-292 (330)
138 PLN03084 alpha/beta hydrolase 99.3 6.3E-10 1.4E-14 122.7 23.2 193 670-895 127-382 (383)
139 KOG0318 WD40 repeat stress pro 99.3 7.9E-09 1.7E-13 109.5 29.9 220 164-490 40-268 (603)
140 KOG0266 WD40 repeat-containing 99.3 3.6E-10 7.7E-15 128.9 21.9 273 110-486 161-453 (456)
141 PRK08775 homoserine O-acetyltr 99.3 8.9E-11 1.9E-15 129.7 16.1 175 708-897 95-339 (343)
142 KOG0286 G-protein beta subunit 99.2 5E-09 1.1E-13 103.2 24.7 259 178-570 47-313 (343)
143 KOG4667 Predicted esterase [Li 99.2 2.4E-10 5.3E-15 107.7 14.8 210 638-881 9-244 (269)
144 TIGR01392 homoserO_Ac_trn homo 99.2 4.1E-10 8.8E-15 124.8 19.1 67 825-894 283-350 (351)
145 PRK11126 2-succinyl-6-hydroxy- 99.2 1.5E-10 3.3E-15 121.4 14.8 188 670-896 2-241 (242)
146 PF12740 Chlorophyllase2: Chlo 99.2 9.3E-10 2E-14 111.1 19.3 179 654-876 6-205 (259)
147 KOG0293 WD40 repeat-containing 99.2 7.6E-10 1.7E-14 113.5 18.5 195 189-487 225-425 (519)
148 KOG4409 Predicted hydrolase/ac 99.2 1.2E-10 2.5E-15 119.5 12.6 176 708-896 113-363 (365)
149 PRK00175 metX homoserine O-ace 99.2 7.8E-10 1.7E-14 123.5 20.2 70 825-897 304-374 (379)
150 KOG0263 Transcription initiati 99.2 4.2E-10 9.2E-15 125.1 17.2 207 177-487 442-649 (707)
151 PF00756 Esterase: Putative es 99.2 3E-11 6.6E-16 127.4 7.8 214 649-894 5-251 (251)
152 PLN02211 methyl indole-3-aceta 99.2 4.9E-10 1.1E-14 119.1 16.6 195 670-895 18-268 (273)
153 PF02897 Peptidase_S9_N: Proly 99.2 2.1E-08 4.6E-13 114.1 30.7 251 314-626 150-413 (414)
154 KOG1407 WD40 repeat protein [F 99.2 5.9E-09 1.3E-13 101.1 21.5 269 109-530 21-293 (313)
155 KOG0266 WD40 repeat-containing 99.2 4.5E-09 9.7E-14 120.0 24.8 246 190-569 161-418 (456)
156 KOG1838 Alpha/beta hydrolase [ 99.2 2.3E-09 5E-14 114.0 20.6 239 638-899 92-390 (409)
157 KOG0273 Beta-transducin family 99.2 6.5E-09 1.4E-13 108.8 23.0 266 188-603 235-513 (524)
158 KOG2314 Translation initiation 99.2 5E-08 1.1E-12 104.1 29.9 306 98-529 201-512 (698)
159 PRK11028 6-phosphogluconolacto 99.2 4.6E-08 9.9E-13 107.8 31.4 226 332-625 80-314 (330)
160 COG2706 3-carboxymuconate cycl 99.1 9.4E-08 2E-12 98.0 30.3 252 316-626 68-332 (346)
161 PF08662 eIF2A: Eukaryotic tra 99.1 2.6E-09 5.6E-14 106.4 18.0 176 112-380 9-185 (194)
162 KOG0305 Anaphase promoting com 99.1 9.4E-09 2E-13 112.6 23.6 249 163-529 197-451 (484)
163 KOG4497 Uncharacterized conser 99.1 2.1E-09 4.6E-14 107.2 16.8 139 113-352 13-154 (447)
164 PLN00181 protein SPA1-RELATED; 99.1 1.7E-08 3.6E-13 124.5 28.9 235 111-485 486-736 (793)
165 KOG1454 Predicted hydrolase/ac 99.1 1.8E-09 4E-14 116.2 17.7 201 669-897 57-324 (326)
166 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.2E-08 4.8E-13 107.2 25.1 134 336-491 198-332 (352)
167 KOG4627 Kynurenine formamidase 99.1 6.2E-10 1.3E-14 104.0 10.5 202 638-877 44-248 (270)
168 KOG2096 WD40 repeat protein [G 99.1 5.8E-09 1.2E-13 103.7 17.3 108 332-474 279-392 (420)
169 PRK13616 lipoprotein LpqB; Pro 99.1 2.3E-09 4.9E-14 123.9 16.8 113 109-261 350-465 (591)
170 KOG2055 WD40 repeat protein [G 99.1 3.4E-09 7.4E-14 110.6 15.9 239 110-486 259-511 (514)
171 KOG0265 U5 snRNP-specific prot 99.1 3.5E-08 7.6E-13 97.8 22.1 271 110-528 49-327 (338)
172 PF03403 PAF-AH_p_II: Platelet 99.1 5E-09 1.1E-13 115.1 18.1 189 668-901 98-362 (379)
173 PF03583 LIP: Secretory lipase 99.1 1.3E-08 2.7E-13 108.2 20.3 191 703-902 17-286 (290)
174 KOG1446 Histone H3 (Lys4) meth 99.1 9.9E-08 2.2E-12 95.6 25.1 251 110-501 16-272 (311)
175 PRK05855 short chain dehydroge 99.0 2E-09 4.4E-14 129.0 15.9 213 645-897 8-292 (582)
176 KOG1407 WD40 repeat protein [F 99.0 1.8E-08 3.9E-13 97.8 18.9 207 163-478 87-295 (313)
177 PF10282 Lactonase: Lactonase, 99.0 1.6E-07 3.5E-12 103.5 29.5 253 315-625 63-332 (345)
178 KOG0973 Histone transcription 99.0 1.3E-08 2.9E-13 117.4 20.9 103 189-351 130-239 (942)
179 PF02239 Cytochrom_D1: Cytochr 99.0 8.4E-08 1.8E-12 105.5 25.9 307 113-567 41-354 (369)
180 TIGR02658 TTQ_MADH_Hv methylam 99.0 8.6E-07 1.9E-11 95.1 32.7 287 219-621 27-334 (352)
181 KOG0296 Angio-associated migra 99.0 1.9E-07 4.2E-12 95.0 25.9 288 110-528 66-387 (399)
182 PF08662 eIF2A: Eukaryotic tra 99.0 5.9E-09 1.3E-13 103.8 15.1 122 312-474 37-162 (194)
183 PF08538 DUF1749: Protein of u 99.0 3.9E-09 8.5E-14 108.5 12.9 186 702-894 53-302 (303)
184 PF02897 Peptidase_S9_N: Proly 99.0 9.7E-08 2.1E-12 108.7 25.8 269 192-568 127-412 (414)
185 PRK06765 homoserine O-acetyltr 99.0 9.8E-09 2.1E-13 113.5 16.8 69 825-896 318-387 (389)
186 KOG2984 Predicted hydrolase [G 99.0 1.3E-09 2.7E-14 101.7 7.8 172 712-896 71-275 (277)
187 PLN02980 2-oxoglutarate decarb 99.0 1.4E-08 3.1E-13 131.9 20.5 199 670-897 1371-1639(1655)
188 KOG0263 Transcription initiati 99.0 1.4E-08 3.1E-13 113.2 17.4 145 332-528 494-638 (707)
189 KOG1273 WD40 repeat protein [G 99.0 1.3E-07 2.8E-12 94.2 21.1 281 99-527 14-311 (405)
190 KOG4497 Uncharacterized conser 98.9 3.8E-09 8.3E-14 105.4 10.5 215 193-529 13-230 (447)
191 PRK13616 lipoprotein LpqB; Pro 98.9 5.9E-08 1.3E-12 112.3 20.7 178 190-450 351-533 (591)
192 KOG0282 mRNA splicing factor [ 98.9 2.6E-08 5.5E-13 104.9 15.7 221 163-490 237-463 (503)
193 KOG0265 U5 snRNP-specific prot 98.9 5.9E-07 1.3E-11 89.3 23.8 249 189-565 48-301 (338)
194 COG0627 Predicted esterase [Ge 98.9 1.8E-08 3.8E-13 106.6 14.1 145 752-900 143-314 (316)
195 KOG0772 Uncharacterized conser 98.9 1.3E-07 2.7E-12 100.3 20.1 256 178-528 159-428 (641)
196 KOG0296 Angio-associated migra 98.9 1.3E-07 2.7E-12 96.3 19.1 272 110-478 108-391 (399)
197 TIGR01838 PHA_synth_I poly(R)- 98.9 8.8E-08 1.9E-12 108.9 19.7 88 703-795 211-303 (532)
198 KOG2096 WD40 repeat protein [G 98.9 2.7E-07 5.8E-12 92.1 20.3 280 187-603 85-393 (420)
199 PRK07868 acyl-CoA synthetase; 98.9 1.5E-07 3.3E-12 118.4 23.5 212 670-904 67-368 (994)
200 COG5354 Uncharacterized protei 98.9 1.5E-06 3.3E-11 92.5 26.8 336 110-606 34-382 (561)
201 COG2382 Fes Enterochelin ester 98.9 4.7E-08 1E-12 99.2 15.0 220 640-898 70-296 (299)
202 PTZ00421 coronin; Provisional 98.9 3E-07 6.6E-12 104.7 23.2 203 110-440 77-289 (493)
203 PTZ00421 coronin; Provisional 98.9 1.1E-06 2.5E-11 100.0 27.6 170 332-567 126-297 (493)
204 KOG0772 Uncharacterized conser 98.8 2.4E-07 5.2E-12 98.2 19.8 252 148-490 174-446 (641)
205 PLN00181 protein SPA1-RELATED; 98.8 2.5E-06 5.3E-11 105.4 32.1 228 189-528 484-727 (793)
206 PF02239 Cytochrom_D1: Cytochr 98.8 2.9E-07 6.3E-12 101.3 20.6 310 163-621 16-351 (369)
207 cd00312 Esterase_lipase Estera 98.8 1.1E-08 2.4E-13 119.3 9.9 129 651-795 78-214 (493)
208 PF07224 Chlorophyllase: Chlor 98.8 1.7E-07 3.6E-12 92.1 15.9 206 652-901 33-278 (307)
209 PF09752 DUF2048: Uncharacteri 98.8 2.5E-07 5.5E-12 96.7 18.3 218 652-895 77-347 (348)
210 KOG2314 Translation initiation 98.8 2.1E-06 4.6E-11 92.1 25.1 305 103-528 244-556 (698)
211 PF05728 UPF0227: Uncharacteri 98.8 2.5E-07 5.5E-12 90.4 17.0 122 758-894 58-186 (187)
212 PTZ00420 coronin; Provisional 98.8 3.6E-06 7.8E-11 96.6 29.0 118 332-490 126-249 (568)
213 PF00561 Abhydrolase_1: alpha/ 98.8 5.6E-09 1.2E-13 108.4 5.8 154 713-877 1-216 (230)
214 KOG0639 Transducin-like enhanc 98.8 2.3E-07 5E-12 97.8 17.4 219 163-488 440-664 (705)
215 COG3571 Predicted hydrolase of 98.8 4E-07 8.7E-12 81.9 16.3 166 703-896 34-210 (213)
216 KOG0275 Conserved WD40 repeat- 98.8 7.5E-08 1.6E-12 95.8 12.3 256 111-472 216-496 (508)
217 KOG2315 Predicted translation 98.8 5.2E-06 1.1E-10 89.6 26.9 332 112-606 38-377 (566)
218 KOG0284 Polyadenylation factor 98.7 1.3E-07 2.9E-12 97.4 13.7 269 110-528 98-369 (464)
219 COG5354 Uncharacterized protei 98.7 3.7E-06 8E-11 89.6 24.0 300 105-528 68-378 (561)
220 PTZ00420 coronin; Provisional 98.7 1.6E-06 3.6E-11 99.3 23.4 225 110-466 76-317 (568)
221 KOG1274 WD40 repeat protein [G 98.7 1.1E-06 2.4E-11 99.8 20.9 257 111-477 16-292 (933)
222 KOG0305 Anaphase promoting com 98.7 2.4E-06 5.2E-11 94.0 22.8 269 190-603 179-451 (484)
223 KOG2315 Predicted translation 98.7 1.2E-06 2.6E-11 94.5 19.3 242 110-474 127-373 (566)
224 KOG0645 WD40 repeat protein [G 98.7 7.6E-06 1.6E-10 80.4 22.6 150 332-528 62-214 (312)
225 TIGR01839 PHA_synth_II poly(R) 98.6 1.2E-06 2.7E-11 98.2 19.0 163 702-876 237-481 (560)
226 KOG0645 WD40 repeat protein [G 98.6 3.1E-06 6.6E-11 83.1 19.0 197 189-485 15-223 (312)
227 COG4188 Predicted dienelactone 98.6 7.4E-08 1.6E-12 100.9 8.5 214 639-877 38-295 (365)
228 KOG3847 Phospholipase A2 (plat 98.6 8E-07 1.7E-11 89.2 15.2 190 667-901 115-375 (399)
229 KOG2112 Lysophospholipase [Lip 98.6 3.2E-07 7E-12 87.9 11.8 115 755-896 89-203 (206)
230 KOG0643 Translation initiation 98.6 1.1E-05 2.3E-10 79.2 22.0 191 110-376 12-222 (327)
231 KOG2139 WD40 repeat protein [G 98.6 9.4E-07 2E-11 89.9 15.5 106 189-354 196-303 (445)
232 PRK10115 protease 2; Provision 98.6 1.2E-05 2.6E-10 96.0 27.4 254 111-491 129-396 (686)
233 KOG0306 WD40-repeat-containing 98.6 3.8E-06 8.1E-11 93.4 20.4 246 164-529 395-654 (888)
234 KOG2624 Triglyceride lipase-ch 98.6 1.8E-06 3.8E-11 94.1 16.8 244 634-898 43-399 (403)
235 KOG1274 WD40 repeat protein [G 98.5 4.4E-06 9.4E-11 95.1 19.8 163 316-529 78-252 (933)
236 KOG0282 mRNA splicing factor [ 98.5 7.3E-07 1.6E-11 94.2 12.7 231 109-474 259-493 (503)
237 PF06433 Me-amine-dh_H: Methyl 98.5 3E-05 6.4E-10 81.1 24.2 218 190-491 96-322 (342)
238 KOG2048 WD40 repeat protein [G 98.5 0.00051 1.1E-08 76.3 34.4 153 110-374 27-184 (691)
239 PF02273 Acyl_transf_2: Acyl t 98.5 3.3E-06 7.1E-11 82.2 15.6 208 644-878 7-239 (294)
240 KOG0283 WD40 repeat-containing 98.5 2.5E-06 5.4E-11 96.5 17.0 209 179-490 362-577 (712)
241 COG2272 PnbA Carboxylesterase 98.5 1.8E-07 3.8E-12 101.4 7.7 128 652-795 80-218 (491)
242 KOG2382 Predicted alpha/beta h 98.5 1.1E-06 2.4E-11 90.7 12.9 201 669-897 51-313 (315)
243 KOG2139 WD40 repeat protein [G 98.5 5.6E-06 1.2E-10 84.4 17.5 157 332-530 196-366 (445)
244 COG2819 Predicted hydrolase of 98.5 1.1E-05 2.5E-10 81.2 19.3 111 750-877 128-245 (264)
245 PF00135 COesterase: Carboxyle 98.5 3E-07 6.4E-12 109.0 9.3 130 651-793 108-244 (535)
246 KOG0275 Conserved WD40 repeat- 98.5 1.4E-06 3E-11 86.9 11.9 248 190-568 215-475 (508)
247 KOG1539 WD repeat protein [Gen 98.5 0.0001 2.2E-09 83.4 27.4 369 108-615 244-646 (910)
248 PF06342 DUF1057: Alpha/beta h 98.4 2.5E-05 5.5E-10 78.8 20.1 130 640-793 7-136 (297)
249 PF06821 Ser_hydrolase: Serine 98.4 5.7E-06 1.2E-10 80.2 15.1 100 759-878 55-155 (171)
250 KOG0319 WD40-repeat-containing 98.4 0.00016 3.4E-09 80.9 27.4 363 110-622 194-582 (775)
251 KOG1273 WD40 repeat protein [G 98.4 2.6E-05 5.7E-10 78.2 18.9 263 190-572 25-292 (405)
252 KOG0283 WD40 repeat-containing 98.4 1.5E-05 3.2E-10 90.4 18.9 162 315-528 393-565 (712)
253 COG4757 Predicted alpha/beta h 98.4 3.5E-06 7.7E-11 81.2 11.7 221 642-894 8-280 (281)
254 KOG0771 Prolactin regulatory e 98.4 8.3E-06 1.8E-10 85.3 15.4 195 101-415 137-341 (398)
255 COG1073 Hydrolases of the alph 98.4 1.8E-06 3.9E-11 93.6 11.0 78 817-898 218-298 (299)
256 KOG1009 Chromatin assembly com 98.3 1.2E-05 2.5E-10 83.6 15.4 61 189-262 124-184 (434)
257 PF08450 SGL: SMP-30/Gluconola 98.3 0.00025 5.4E-09 74.3 25.9 144 313-491 21-166 (246)
258 cd00707 Pancreat_lipase_like P 98.3 4.2E-06 9.2E-11 88.5 12.0 108 670-793 36-146 (275)
259 COG3208 GrsT Predicted thioest 98.3 6.8E-06 1.5E-10 81.2 12.3 148 740-898 53-233 (244)
260 KOG0284 Polyadenylation factor 98.3 6.4E-06 1.4E-10 85.3 12.5 246 98-487 129-380 (464)
261 PF08450 SGL: SMP-30/Gluconola 98.3 9.5E-05 2.1E-09 77.5 21.7 213 164-474 23-244 (246)
262 KOG0295 WD40 repeat-containing 98.3 1.5E-05 3.3E-10 81.5 14.6 228 163-487 130-364 (406)
263 PF06057 VirJ: Bacterial virul 98.3 1.5E-05 3.3E-10 76.1 13.8 170 697-895 14-190 (192)
264 KOG0288 WD40 repeat protein Ti 98.3 1.1E-05 2.4E-10 83.8 13.5 263 156-484 190-458 (459)
265 KOG0639 Transducin-like enhanc 98.3 1.8E-05 3.8E-10 84.0 14.6 245 99-486 455-703 (705)
266 KOG2919 Guanine nucleotide-bin 98.2 6.5E-05 1.4E-09 75.8 17.6 65 187-261 103-176 (406)
267 KOG2919 Guanine nucleotide-bin 98.2 5.3E-05 1.1E-09 76.4 15.7 128 315-477 134-272 (406)
268 KOG2564 Predicted acetyltransf 98.2 1.2E-05 2.5E-10 80.0 10.6 125 638-791 49-179 (343)
269 KOG1009 Chromatin assembly com 98.2 0.00012 2.6E-09 76.2 18.2 105 189-353 66-187 (434)
270 KOG0640 mRNA cleavage stimulat 98.2 4.5E-05 9.9E-10 76.2 14.5 197 189-487 113-335 (430)
271 KOG0643 Translation initiation 98.2 0.00072 1.6E-08 66.7 22.3 234 139-475 8-251 (327)
272 KOG0319 WD40-repeat-containing 98.2 0.0012 2.7E-08 74.0 26.8 237 112-491 23-270 (775)
273 KOG1553 Predicted alpha/beta h 98.2 4.6E-06 1E-10 84.6 7.3 181 640-845 215-398 (517)
274 COG2021 MET2 Homoserine acetyl 98.1 0.00011 2.4E-09 77.3 17.6 150 738-895 127-366 (368)
275 PF10340 DUF2424: Protein of u 98.1 9.4E-05 2E-09 79.2 17.5 200 654-877 108-350 (374)
276 KOG1524 WD40 repeat-containing 98.1 2E-05 4.4E-10 84.3 12.0 169 189-475 105-276 (737)
277 KOG0306 WD40-repeat-containing 98.1 0.0002 4.3E-09 80.2 19.8 202 189-491 374-584 (888)
278 KOG2106 Uncharacterized conser 98.1 0.0026 5.7E-08 68.3 27.0 142 332-528 369-510 (626)
279 KOG0288 WD40 repeat protein Ti 98.1 5.7E-05 1.2E-09 78.6 14.4 212 110-415 221-448 (459)
280 PF07433 DUF1513: Protein of u 98.1 0.0012 2.6E-08 68.6 23.9 226 191-491 7-249 (305)
281 KOG0310 Conserved WD40 repeat- 98.1 0.00038 8.2E-09 74.3 20.5 264 189-601 27-297 (487)
282 KOG0278 Serine/threonine kinas 98.1 5.9E-05 1.3E-09 73.3 13.0 193 190-490 102-300 (334)
283 TIGR03230 lipo_lipase lipoprot 98.1 3E-05 6.5E-10 85.8 12.6 109 670-793 41-153 (442)
284 PF07433 DUF1513: Protein of u 98.1 0.00032 6.9E-09 72.8 19.2 210 315-569 29-256 (305)
285 PF10142 PhoPQ_related: PhoPQ- 98.1 0.00033 7.2E-09 75.5 19.9 142 751-902 164-325 (367)
286 PLN02919 haloacid dehalogenase 98.1 0.0017 3.7E-08 81.4 29.2 126 335-491 686-835 (1057)
287 KOG0289 mRNA splicing factor [ 98.1 0.00058 1.3E-08 71.8 20.6 194 190-490 263-463 (506)
288 KOG1538 Uncharacterized conser 98.1 0.00016 3.5E-09 79.5 17.2 98 109-260 13-110 (1081)
289 COG0596 MhpC Predicted hydrola 98.0 7.1E-05 1.5E-09 78.8 14.7 71 713-793 51-122 (282)
290 KOG0310 Conserved WD40 repeat- 98.0 0.00029 6.3E-09 75.2 18.5 225 189-528 69-298 (487)
291 PF06433 Me-amine-dh_H: Methyl 98.0 0.0024 5.2E-08 67.2 25.0 288 163-571 17-331 (342)
292 KOG0289 mRNA splicing factor [ 98.0 0.00062 1.3E-08 71.6 20.2 241 130-476 250-497 (506)
293 COG3545 Predicted esterase of 98.0 0.00016 3.4E-09 67.6 14.3 134 740-896 43-178 (181)
294 KOG1445 Tumor-specific antigen 98.0 6.3E-05 1.4E-09 82.0 13.3 222 164-474 604-832 (1012)
295 KOG1332 Vesicle coat complex C 98.0 0.00044 9.6E-09 67.3 17.4 243 163-490 33-289 (299)
296 KOG0647 mRNA export protein (c 98.0 0.00025 5.5E-09 71.1 16.3 247 163-477 50-315 (347)
297 KOG2551 Phospholipase/carboxyh 98.0 5.9E-05 1.3E-09 73.1 11.5 125 742-900 91-223 (230)
298 KOG0295 WD40 repeat-containing 98.0 0.00023 5E-09 73.1 15.9 81 164-261 173-253 (406)
299 KOG0299 U3 snoRNP-associated p 98.0 0.00077 1.7E-08 71.5 19.4 59 190-261 204-262 (479)
300 PF12146 Hydrolase_4: Putative 98.0 2.3E-05 5.1E-10 64.7 6.7 75 649-747 1-78 (79)
301 PF03959 FSH1: Serine hydrolas 97.9 6.4E-05 1.4E-09 76.4 11.2 92 761-878 104-203 (212)
302 KOG0277 Peroxisomal targeting 97.9 0.00024 5.1E-09 69.5 14.1 256 163-527 38-297 (311)
303 KOG0640 mRNA cleavage stimulat 97.9 0.00023 5E-09 71.3 14.3 279 110-486 114-425 (430)
304 KOG0316 Conserved WD40 repeat- 97.9 0.00036 7.8E-09 67.5 15.1 193 110-378 19-217 (307)
305 PF05677 DUF818: Chlamydia CHL 97.9 0.00046 1E-08 71.7 17.0 123 638-780 111-236 (365)
306 PLN02919 haloacid dehalogenase 97.9 0.0041 8.8E-08 78.2 28.4 126 334-491 742-890 (1057)
307 KOG2394 WD40 protein DMR-N9 [G 97.9 0.0019 4.1E-08 69.9 21.4 67 451-529 286-352 (636)
308 TIGR01849 PHB_depoly_PhaZ poly 97.9 0.00077 1.7E-08 74.0 18.7 70 826-897 333-406 (406)
309 KOG1523 Actin-related protein 97.9 0.00057 1.2E-08 69.2 15.7 106 110-261 12-118 (361)
310 KOG2394 WD40 protein DMR-N9 [G 97.9 0.00016 3.5E-09 77.8 12.6 91 332-465 291-384 (636)
311 COG3386 Gluconolactonase [Carb 97.9 0.0052 1.1E-07 65.5 24.0 159 191-441 27-193 (307)
312 KOG1524 WD40 repeat-containing 97.8 0.00018 3.8E-09 77.3 12.3 80 161-261 124-204 (737)
313 KOG2048 WD40 repeat protein [G 97.8 0.001 2.2E-08 74.0 18.2 163 110-377 384-551 (691)
314 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0022 4.8E-08 66.9 20.4 149 190-415 25-182 (253)
315 KOG0278 Serine/threonine kinas 97.8 0.00048 1E-08 67.1 13.6 172 164-440 123-296 (334)
316 KOG0650 WD40 repeat nucleolar 97.8 0.0011 2.4E-08 72.4 17.7 120 314-474 546-679 (733)
317 TIGR03502 lipase_Pla1_cef extr 97.8 0.00015 3.3E-09 85.4 12.1 93 670-780 449-576 (792)
318 KOG1538 Uncharacterized conser 97.8 0.00084 1.8E-08 74.0 16.6 57 190-261 14-71 (1081)
319 KOG0771 Prolactin regulatory e 97.8 0.00051 1.1E-08 72.2 14.4 71 400-490 283-357 (398)
320 PF04762 IKI3: IKI3 family; I 97.8 0.024 5.2E-07 70.0 31.1 111 400-528 211-323 (928)
321 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0022 4.8E-08 66.9 18.6 104 110-262 25-130 (253)
322 PRK02888 nitrous-oxide reducta 97.7 0.012 2.6E-07 67.1 25.0 206 198-490 139-352 (635)
323 KOG0316 Conserved WD40 repeat- 97.7 0.0021 4.6E-08 62.3 16.1 195 189-491 18-215 (307)
324 PF11339 DUF3141: Protein of u 97.7 0.0013 2.8E-08 72.0 16.0 50 825-876 292-348 (581)
325 COG3386 Gluconolactonase [Carb 97.7 0.018 4E-07 61.3 24.7 49 314-374 143-193 (307)
326 KOG0641 WD40 repeat protein [G 97.6 0.033 7.1E-07 53.7 23.1 137 313-490 162-304 (350)
327 PF10230 DUF2305: Uncharacteri 97.6 0.00055 1.2E-08 72.0 12.8 106 670-793 2-121 (266)
328 KOG0641 WD40 repeat protein [G 97.6 0.012 2.6E-07 56.6 20.1 111 333-486 233-348 (350)
329 KOG3253 Predicted alpha/beta h 97.6 0.00088 1.9E-08 73.8 14.3 102 754-878 245-347 (784)
330 KOG1963 WD40 repeat protein [G 97.6 0.012 2.7E-07 67.8 23.7 102 111-261 208-310 (792)
331 KOG1063 RNA polymerase II elon 97.6 0.011 2.3E-07 66.3 22.1 75 400-486 527-601 (764)
332 KOG1445 Tumor-specific antigen 97.6 0.00046 1E-08 75.5 11.5 157 330-528 626-783 (1012)
333 COG3243 PhaC Poly(3-hydroxyalk 97.6 0.0011 2.4E-08 70.8 14.1 88 703-795 130-218 (445)
334 KOG0307 Vesicle coat complex C 97.6 0.00035 7.7E-09 82.2 11.3 211 185-491 61-286 (1049)
335 KOG4378 Nuclear protein COP1 [ 97.6 0.0062 1.3E-07 65.3 19.3 145 332-528 122-269 (673)
336 PF04762 IKI3: IKI3 family; I 97.6 0.067 1.5E-06 66.2 31.4 84 315-417 238-323 (928)
337 KOG1007 WD repeat protein TSSC 97.6 0.0065 1.4E-07 60.8 18.1 114 190-375 125-246 (370)
338 KOG0294 WD40 repeat-containing 97.6 0.0068 1.5E-07 61.6 18.3 216 163-491 63-285 (362)
339 KOG0313 Microtubule binding pr 97.6 0.012 2.7E-07 61.1 20.5 273 96-489 93-378 (423)
340 COG4947 Uncharacterized protei 97.6 0.00013 2.9E-09 66.8 5.8 120 743-877 87-216 (227)
341 KOG0292 Vesicle coat complex C 97.5 0.056 1.2E-06 62.5 27.1 110 109-232 52-170 (1202)
342 PRK04940 hypothetical protein; 97.5 0.0018 3.8E-08 62.2 13.4 116 759-895 60-178 (180)
343 KOG1034 Transcriptional repres 97.5 0.002 4.3E-08 65.6 13.6 116 190-378 91-215 (385)
344 KOG2110 Uncharacterized conser 97.5 0.0021 4.5E-08 66.6 13.7 135 163-375 106-249 (391)
345 PF06028 DUF915: Alpha/beta hy 97.5 0.0013 2.9E-08 67.8 12.6 152 736-895 82-253 (255)
346 KOG1036 Mitotic spindle checkp 97.4 0.1 2.2E-06 53.2 24.7 118 180-375 6-125 (323)
347 TIGR02171 Fb_sc_TIGR02171 Fibr 97.4 0.0059 1.3E-07 71.8 18.4 82 164-261 330-417 (912)
348 KOG1036 Mitotic spindle checkp 97.4 0.053 1.1E-06 55.2 22.3 90 110-253 15-104 (323)
349 PF11144 DUF2920: Protein of u 97.4 0.0056 1.2E-07 66.0 16.6 135 735-871 158-332 (403)
350 KOG2106 Uncharacterized conser 97.4 0.28 6.2E-06 53.3 28.8 59 189-259 201-262 (626)
351 KOG0277 Peroxisomal targeting 97.4 0.0038 8.3E-08 61.4 13.8 243 110-488 62-308 (311)
352 KOG1516 Carboxylesterase and r 97.4 0.0002 4.4E-09 84.7 6.2 126 652-793 97-231 (545)
353 KOG0650 WD40 repeat nucleolar 97.4 0.0028 6.1E-08 69.5 14.1 270 189-528 401-679 (733)
354 PF12048 DUF3530: Protein of u 97.4 0.016 3.5E-07 62.2 20.1 213 640-897 63-309 (310)
355 KOG0285 Pleiotropic regulator 97.4 0.026 5.7E-07 58.3 19.9 182 189-473 152-337 (460)
356 KOG0264 Nucleosome remodeling 97.4 0.013 2.8E-07 62.5 18.1 227 163-487 147-404 (422)
357 KOG0292 Vesicle coat complex C 97.4 0.21 4.5E-06 58.1 28.5 247 110-489 11-282 (1202)
358 PF07676 PD40: WD40-like Beta 97.3 0.00042 9.2E-09 48.6 4.9 31 189-223 9-39 (39)
359 PF00975 Thioesterase: Thioest 97.3 0.0051 1.1E-07 63.6 14.9 83 703-793 18-103 (229)
360 PRK02888 nitrous-oxide reducta 97.3 0.17 3.7E-06 58.0 27.2 36 328-375 317-352 (635)
361 KOG2110 Uncharacterized conser 97.3 0.0047 1E-07 64.1 13.3 128 367-528 107-237 (391)
362 KOG0268 Sof1-like rRNA process 97.3 0.0034 7.4E-08 64.7 12.3 155 322-528 177-334 (433)
363 KOG1539 WD repeat protein [Gen 97.3 0.0021 4.6E-08 73.2 11.8 185 110-374 450-648 (910)
364 KOG0307 Vesicle coat complex C 97.3 0.0024 5.2E-08 75.5 12.6 170 332-566 117-290 (1049)
365 KOG0313 Microtubule binding pr 97.2 0.04 8.7E-07 57.5 19.7 239 187-528 104-364 (423)
366 COG3490 Uncharacterized protei 97.2 0.071 1.5E-06 53.8 20.7 124 333-478 115-247 (366)
367 TIGR02171 Fb_sc_TIGR02171 Fibr 97.2 0.028 6E-07 66.5 20.9 129 344-505 319-457 (912)
368 COG1770 PtrB Protease II [Amin 97.2 0.13 2.8E-06 58.6 25.1 108 110-261 130-241 (682)
369 KOG0303 Actin-binding protein 97.2 0.037 8.1E-07 58.0 19.3 138 313-488 153-295 (472)
370 KOG4378 Nuclear protein COP1 [ 97.2 0.012 2.7E-07 63.1 16.2 136 314-491 143-282 (673)
371 KOG0269 WD40 repeat-containing 97.2 0.0043 9.4E-08 70.2 13.4 183 163-440 110-295 (839)
372 KOG0264 Nucleosome remodeling 97.2 0.018 3.9E-07 61.4 17.3 237 117-440 144-403 (422)
373 PF15492 Nbas_N: Neuroblastoma 97.2 0.086 1.9E-06 53.5 21.1 36 190-234 45-80 (282)
374 KOG0290 Conserved WD40 repeat- 97.2 0.038 8.2E-07 55.7 18.4 232 164-487 74-318 (364)
375 KOG0285 Pleiotropic regulator 97.2 0.11 2.3E-06 54.0 21.8 241 136-491 146-391 (460)
376 KOG0647 mRNA export protein (c 97.1 0.38 8.3E-06 49.0 25.3 122 180-376 20-147 (347)
377 COG1506 DAP2 Dipeptidyl aminop 97.1 0.013 2.8E-07 69.9 17.5 104 190-349 14-118 (620)
378 KOG1332 Vesicle coat complex C 97.1 0.048 1E-06 53.6 17.7 160 332-528 103-275 (299)
379 KOG0294 WD40 repeat-containing 97.1 0.034 7.3E-07 56.7 17.1 79 163-261 107-186 (362)
380 PF07819 PGAP1: PGAP1-like pro 97.1 0.0096 2.1E-07 60.8 13.7 55 740-794 63-123 (225)
381 PLN02733 phosphatidylcholine-s 97.1 0.0023 4.9E-08 71.7 9.7 88 703-796 112-203 (440)
382 KOG1063 RNA polymerase II elon 97.1 0.0076 1.7E-07 67.4 13.3 109 111-261 528-636 (764)
383 PTZ00472 serine carboxypeptida 97.1 0.0039 8.4E-08 71.0 11.6 150 641-795 51-217 (462)
384 PF07082 DUF1350: Protein of u 97.0 0.031 6.7E-07 56.2 16.3 184 654-876 8-204 (250)
385 KOG0276 Vesicle coat complex C 97.0 0.33 7.1E-06 54.3 24.7 208 163-474 35-246 (794)
386 PF05577 Peptidase_S28: Serine 97.0 0.0045 9.9E-08 70.7 11.7 88 705-795 51-149 (434)
387 COG3150 Predicted esterase [Ge 97.0 0.0086 1.9E-07 55.4 10.7 139 735-895 41-187 (191)
388 PF07519 Tannase: Tannase and 97.0 0.068 1.5E-06 61.0 20.7 85 707-792 54-148 (474)
389 PF05705 DUF829: Eukaryotic pr 97.0 0.028 6.2E-07 58.4 16.3 64 828-893 176-239 (240)
390 KOG1007 WD repeat protein TSSC 96.9 0.046 1E-06 55.0 16.2 106 333-477 172-280 (370)
391 KOG4283 Transcription-coupled 96.9 0.27 5.8E-06 49.8 20.9 134 316-487 126-276 (397)
392 KOG1408 WD40 repeat protein [F 96.9 0.018 3.8E-07 64.6 13.9 116 333-488 598-714 (1080)
393 KOG4283 Transcription-coupled 96.9 0.044 9.5E-07 55.2 15.3 155 157-377 118-279 (397)
394 KOG0303 Actin-binding protein 96.9 0.089 1.9E-06 55.3 18.1 100 332-473 132-233 (472)
395 KOG0268 Sof1-like rRNA process 96.8 0.0045 9.8E-08 63.9 8.4 172 164-440 168-344 (433)
396 PF03096 Ndr: Ndr family; Int 96.8 0.058 1.3E-06 55.8 16.4 219 643-895 3-277 (283)
397 KOG0321 WD40 repeat-containing 96.8 0.13 2.7E-06 57.6 19.5 61 188-261 100-162 (720)
398 KOG4328 WD40 protein [Function 96.8 0.22 4.8E-06 53.5 20.4 228 163-491 210-452 (498)
399 PF07676 PD40: WD40-like Beta 96.7 0.0026 5.6E-08 44.5 4.2 37 449-485 2-39 (39)
400 PF06977 SdiA-regulated: SdiA- 96.7 0.17 3.6E-06 52.1 18.9 58 190-259 23-80 (248)
401 KOG1963 WD40 repeat protein [G 96.7 0.61 1.3E-05 54.4 24.8 113 459-617 209-322 (792)
402 KOG0299 U3 snoRNP-associated p 96.7 0.089 1.9E-06 56.4 16.9 53 430-484 399-454 (479)
403 KOG1523 Actin-related protein 96.7 0.023 4.9E-07 58.0 11.9 139 111-261 22-164 (361)
404 KOG0290 Conserved WD40 repeat- 96.6 0.31 6.7E-06 49.4 19.4 145 332-527 151-305 (364)
405 KOG0302 Ribosome Assembly prot 96.5 0.069 1.5E-06 55.8 14.7 139 315-490 235-381 (440)
406 PF15492 Nbas_N: Neuroblastoma 96.5 0.5 1.1E-05 48.2 20.1 38 332-382 44-81 (282)
407 KOG0308 Conserved WD40 repeat- 96.5 0.035 7.6E-07 61.9 12.9 106 364-487 138-243 (735)
408 PF00151 Lipase: Lipase; Inte 96.5 0.008 1.7E-07 65.0 7.9 110 670-793 71-186 (331)
409 PF06977 SdiA-regulated: SdiA- 96.4 0.31 6.8E-06 50.2 19.0 117 332-488 22-148 (248)
410 COG3391 Uncharacterized conser 96.4 0.62 1.3E-05 52.1 22.9 159 190-440 117-282 (381)
411 PF01674 Lipase_2: Lipase (cla 96.4 0.018 4E-07 57.9 9.4 71 703-780 20-96 (219)
412 KOG4389 Acetylcholinesterase/B 96.4 0.0053 1.2E-07 66.4 5.6 125 652-795 121-256 (601)
413 KOG0646 WD40 repeat protein [G 96.3 0.09 2E-06 56.5 14.6 142 314-490 103-248 (476)
414 KOG1920 IkappaB kinase complex 96.3 1 2.2E-05 54.7 24.5 58 190-261 70-127 (1265)
415 KOG0302 Ribosome Assembly prot 96.3 0.15 3.3E-06 53.4 15.5 130 366-527 234-365 (440)
416 COG3391 Uncharacterized conser 96.3 0.48 1E-05 53.0 21.3 206 191-491 76-285 (381)
417 KOG0646 WD40 repeat protein [G 96.3 0.11 2.4E-06 55.9 14.8 60 189-261 82-141 (476)
418 KOG2041 WD40 repeat protein [G 96.3 0.32 7E-06 55.0 18.8 113 334-475 159-278 (1189)
419 KOG0281 Beta-TrCP (transducin 96.3 0.12 2.7E-06 53.2 14.4 211 160-489 214-430 (499)
420 KOG1920 IkappaB kinase complex 96.3 1.4 3E-05 53.6 25.0 166 332-546 69-277 (1265)
421 KOG4328 WD40 protein [Function 96.2 0.57 1.2E-05 50.5 19.7 115 332-486 280-398 (498)
422 KOG2321 WD40 repeat protein [G 96.2 0.66 1.4E-05 51.5 20.5 117 313-466 154-282 (703)
423 KOG4840 Predicted hydrolases o 96.2 0.22 4.7E-06 48.5 14.9 89 703-798 57-148 (299)
424 KOG1034 Transcriptional repres 96.2 0.22 4.7E-06 51.3 15.5 85 163-261 115-199 (385)
425 KOG1408 WD40 repeat protein [F 96.1 0.08 1.7E-06 59.6 13.3 98 403-528 601-702 (1080)
426 KOG0267 Microtubule severing p 96.1 0.019 4E-07 64.8 8.4 81 163-261 92-172 (825)
427 KOG3967 Uncharacterized conser 96.0 0.043 9.2E-07 52.7 9.3 112 669-782 100-213 (297)
428 KOG0308 Conserved WD40 repeat- 96.0 0.22 4.7E-06 55.9 15.6 159 110-375 75-244 (735)
429 PF00450 Peptidase_S10: Serine 95.9 0.042 9.1E-07 62.6 10.7 149 642-795 16-182 (415)
430 KOG0300 WD40 repeat-containing 95.9 0.42 9.1E-06 48.7 15.9 54 159-224 166-219 (481)
431 COG4814 Uncharacterized protei 95.8 0.089 1.9E-06 52.5 10.7 144 740-896 119-286 (288)
432 COG3204 Uncharacterized protei 95.8 2.5 5.4E-05 43.6 21.0 58 189-260 86-145 (316)
433 PF08386 Abhydrolase_4: TAP-li 95.8 0.02 4.4E-07 50.3 5.6 60 830-896 34-93 (103)
434 COG2319 FOG: WD40 repeat [Gene 95.7 2.1 4.5E-05 48.0 23.8 220 163-490 87-315 (466)
435 KOG0269 WD40 repeat-containing 95.6 0.81 1.8E-05 52.7 18.7 114 332-486 177-295 (839)
436 PF05694 SBP56: 56kDa selenium 95.6 1.8 3.8E-05 47.5 20.3 67 458-528 314-392 (461)
437 KOG2182 Hydrolytic enzymes of 95.5 0.066 1.4E-06 58.8 9.4 134 644-794 63-207 (514)
438 KOG4388 Hormone-sensitive lipa 95.5 0.011 2.4E-07 64.9 3.5 90 670-779 396-489 (880)
439 PF04053 Coatomer_WDAD: Coatom 95.5 0.52 1.1E-05 53.2 16.9 37 315-352 127-165 (443)
440 KOG2111 Uncharacterized conser 95.4 1.9 4.1E-05 44.6 18.6 94 217-375 157-257 (346)
441 COG3204 Uncharacterized protei 95.3 2.2 4.9E-05 43.9 18.9 117 332-488 86-211 (316)
442 KOG0270 WD40 repeat-containing 95.2 2.4 5.2E-05 45.8 19.3 59 191-261 246-305 (463)
443 PF11187 DUF2974: Protein of u 95.1 0.027 5.9E-07 57.1 4.7 53 741-793 66-122 (224)
444 KOG2111 Uncharacterized conser 95.0 2.2 4.8E-05 44.1 17.7 97 365-488 158-257 (346)
445 KOG4532 WD40-like repeat conta 94.9 1 2.2E-05 45.3 14.5 88 163-261 180-270 (344)
446 KOG2931 Differentiation-relate 94.9 0.97 2.1E-05 46.4 14.8 129 639-794 22-157 (326)
447 PF13449 Phytase-like: Esteras 94.7 8 0.00017 42.1 23.3 122 366-490 112-252 (326)
448 COG3319 Thioesterase domains o 94.7 0.077 1.7E-06 54.7 6.9 73 713-793 27-102 (257)
449 COG3490 Uncharacterized protei 94.6 5.7 0.00012 40.7 19.0 166 453-658 65-246 (366)
450 PF05990 DUF900: Alpha/beta hy 94.3 0.21 4.7E-06 51.3 9.1 83 739-843 75-166 (233)
451 PRK10252 entF enterobactin syn 94.2 0.4 8.7E-06 63.6 14.0 75 710-792 1092-1169(1296)
452 KOG2183 Prolylcarboxypeptidase 94.2 0.051 1.1E-06 57.9 4.3 58 736-793 144-202 (492)
453 PF04053 Coatomer_WDAD: Coatom 94.2 0.5 1.1E-05 53.3 12.4 87 343-474 117-213 (443)
454 KOG0267 Microtubule severing p 94.1 0.078 1.7E-06 60.0 5.6 112 315-466 93-207 (825)
455 COG3946 VirJ Type IV secretory 94.1 0.2 4.3E-06 53.6 8.3 78 697-782 272-349 (456)
456 PRK13614 lipoprotein LpqB; Pro 94.1 3.2 7E-05 48.3 18.8 148 315-491 366-520 (573)
457 KOG2100 Dipeptidyl aminopeptid 93.8 7.6 0.00016 47.4 22.3 65 195-263 103-167 (755)
458 KOG1551 Uncharacterized conser 93.7 0.31 6.8E-06 48.7 8.3 58 833-897 309-366 (371)
459 PRK13614 lipoprotein LpqB; Pro 93.5 2.5 5.4E-05 49.2 16.7 66 188-261 382-451 (573)
460 KOG2041 WD40 repeat protein [G 93.5 1.2 2.5E-05 50.8 13.2 29 325-353 252-280 (1189)
461 KOG0301 Phospholipase A2-activ 93.4 3 6.5E-05 47.7 16.3 170 117-374 78-249 (745)
462 COG4782 Uncharacterized protei 93.4 0.35 7.5E-06 51.3 8.6 54 737-792 171-232 (377)
463 KOG3975 Uncharacterized conser 93.3 3.1 6.8E-05 41.7 14.4 51 741-792 93-145 (301)
464 KOG2565 Predicted hydrolases o 93.2 0.34 7.4E-06 51.1 8.1 118 648-789 132-259 (469)
465 KOG0276 Vesicle coat complex C 93.1 11 0.00023 42.9 19.6 199 190-490 15-218 (794)
466 COG2319 FOG: WD40 repeat [Gene 92.9 18 0.00039 40.2 25.4 160 316-527 136-302 (466)
467 PRK13615 lipoprotein LpqB; Pro 92.8 9.5 0.0002 44.4 19.9 140 316-491 357-504 (557)
468 PLN02209 serine carboxypeptida 92.7 0.64 1.4E-05 52.5 10.1 151 640-795 42-213 (437)
469 TIGR02604 Piru_Ver_Nterm putat 92.6 4.6 0.0001 44.9 16.9 34 314-347 164-199 (367)
470 PF13360 PQQ_2: PQQ-like domai 92.6 14 0.0003 37.9 23.6 52 313-378 45-98 (238)
471 TIGR02604 Piru_Ver_Nterm putat 92.6 2.9 6.2E-05 46.6 15.2 130 315-470 48-198 (367)
472 PRK13615 lipoprotein LpqB; Pro 92.5 3.8 8.3E-05 47.5 16.2 98 112-261 337-434 (557)
473 PRK13613 lipoprotein LpqB; Pro 92.5 9.1 0.0002 45.1 19.5 57 190-261 364-425 (599)
474 PF01764 Lipase_3: Lipase (cla 92.5 0.31 6.6E-06 45.7 6.3 40 738-779 45-84 (140)
475 cd00741 Lipase Lipase. Lipase 92.4 0.41 8.9E-06 45.7 7.1 53 738-792 9-65 (153)
476 PF13360 PQQ_2: PQQ-like domai 92.3 15 0.00033 37.6 22.5 32 197-237 33-64 (238)
477 KOG1912 WD40 repeat protein [G 92.1 8.9 0.00019 44.6 17.8 51 190-255 17-67 (1062)
478 KOG4547 WD40 repeat-containing 92.1 15 0.00033 41.4 19.3 50 315-379 125-177 (541)
479 KOG4227 WD40 repeat protein [G 92.0 2.3 5E-05 44.8 12.2 108 110-261 58-167 (609)
480 KOG1282 Serine carboxypeptidas 91.7 1.7 3.6E-05 48.8 11.7 150 641-795 48-214 (454)
481 TIGR03606 non_repeat_PQQ dehyd 91.7 14 0.00029 41.9 18.9 126 327-474 24-163 (454)
482 PF05057 DUF676: Putative seri 91.6 0.2 4.4E-06 50.9 4.3 22 758-779 77-98 (217)
483 PRK13613 lipoprotein LpqB; Pro 91.5 30 0.00064 40.9 22.2 132 327-491 404-541 (599)
484 PF02450 LCAT: Lecithin:choles 91.2 0.43 9.3E-06 53.4 6.8 83 703-795 69-161 (389)
485 KOG4532 WD40-like repeat conta 91.2 6.8 0.00015 39.7 14.0 116 334-491 161-284 (344)
486 PLN03016 sinapoylglucose-malat 91.1 0.93 2E-05 51.2 9.2 150 641-795 41-211 (433)
487 KOG3621 WD40 repeat-containing 91.1 6.7 0.00015 45.2 15.5 275 195-622 40-358 (726)
488 KOG1354 Serine/threonine prote 90.8 14 0.0003 38.9 16.1 268 185-568 22-367 (433)
489 TIGR03300 assembly_YfgL outer 90.6 33 0.00071 38.3 29.5 55 553-623 290-344 (377)
490 KOG1587 Cytoplasmic dynein int 90.5 40 0.00087 39.3 22.0 55 164-231 223-277 (555)
491 PF07995 GSDH: Glucose / Sorbo 90.4 14 0.0003 40.4 17.5 81 401-487 116-212 (331)
492 KOG4547 WD40 repeat-containing 90.4 22 0.00048 40.2 18.5 141 313-497 79-230 (541)
493 KOG3914 WD repeat protein WDR4 90.4 3.3 7.2E-05 44.2 11.6 115 333-488 64-180 (390)
494 PF11768 DUF3312: Protein of u 90.3 16 0.00034 41.6 17.4 141 313-488 183-330 (545)
495 PF03283 PAE: Pectinacetyleste 90.1 0.45 9.7E-06 52.2 5.4 37 742-778 139-175 (361)
496 KOG0300 WD40 repeat-containing 90.0 26 0.00057 36.3 18.1 36 332-380 273-308 (481)
497 smart00824 PKS_TE Thioesterase 89.8 3 6.6E-05 41.7 11.2 34 759-792 64-100 (212)
498 PF06259 Abhydrolase_8: Alpha/ 89.8 2.3 4.9E-05 41.3 9.3 79 712-791 62-141 (177)
499 KOG1520 Predicted alkaloid syn 89.5 9.7 0.00021 41.1 14.4 121 190-352 116-239 (376)
500 COG4287 PqaA PhoPQ-activated p 89.4 0.38 8.1E-06 50.5 3.8 133 740-878 214-372 (507)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=419.67 Aligned_cols=599 Identities=18% Similarity=0.230 Sum_probs=390.1
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
..+++....+..+.++|+|+.++|.... ++....... +.+|+.+.. ..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~~~~ 55 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------TVRL 55 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------cccc
Confidence 4466667788899999999999999874 222222211 467775431 1112
Q ss_pred eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+.+..+..+.|||||+.++|... .+....++|+++.+ | .++..... +....|+|+|+.+++.
T Consensus 56 ---~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 56 ---LTFGGGVSELRWSPDGSVLAFVST-----DGGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ---cccCCcccccccCCCCCEEEEEec-----cCCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 224457899999999999999762 12336899999987 4 22221221 5688999999999984
Q ss_pred ecCCCCCCCCC-CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-cccccccc
Q 002164 262 IPLLRGDPPKK-PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~ 339 (958)
........... ...+....++. +.++ ....++|+++..+....+... ..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 175 (620)
T COG1506 119 TAEGASKRDGGDHLFVDRLPVWF-----------------DGRG------GERSDLYVVDIESKLIKLGLGNLDVVSFAT 175 (620)
T ss_pred ecccccccCCceeeeecccceee-----------------cCCC------CcccceEEEccCcccccccCCCCceeeeee
Confidence 22211110000 00000000000 0000 134678899884344444444 66677778
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++|++.++....... .........++....+....++..+ .+...+.|.+||+.+++....
T Consensus 176 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 176 DGDGRLVASIRLDDD------ADPWVTNLYVLIEGNGELESLTPGE-------------GSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred CCCCceeEEeeeccc------cCCceEeeEEEecCCCceEEEcCCC-------------ceeeeeeeCCCCCeeEEeccC
Confidence 877888877764432 0111223444433344444444332 224567889999988775332
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
.+. .. .....+++++. +.+.... ++... . . ..
T Consensus 237 ~~~-~~----~~~~~~~~~~~---~~~~~d~------------------------------------~~~~~--~-~-~~ 268 (620)
T COG1506 237 SDR-GL----AEGDFILLLDG---ELGEVDG------------------------------------DLSSG--D-D-TR 268 (620)
T ss_pred Ccc-Cc----cccceEEEEec---cccccce------------------------------------eeccC--C-c-cc
Confidence 211 00 11112222220 0000000 00000 0 0 00
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
. ... ..+.-++..++|..... .....++..+...+. ..+...+..
T Consensus 269 -~-~~~---------~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~~~~~~------ 313 (620)
T COG1506 269 -G-AWA---------VEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGLSGDDG------ 313 (620)
T ss_pred -C-cHH---------hccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeeecCCCc------
Confidence 0 000 00112333344443210 001112222222222 222222211
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecC-CCCCCCCCCCcEEEEEEEeCCCeEEEEEEEe
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF-PHPYPQLASLQKELIKYQRKDGVQLSATLYL 658 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~ 658 (958)
.-..|+.+++.+++..+++..|+++|+++. ++..+++.. +..+......++|.+++++.||.++++++++
T Consensus 314 -------~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~ 384 (620)
T COG1506 314 -------GVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYK 384 (620)
T ss_pred -------eEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEec
Confidence 012455689999999999999999999987 444555544 3444567778899999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhh
Q 002164 659 PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRF 735 (958)
Q Consensus 659 P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~ 735 (958)
|+++++.++ +|+||++||||..... .......+.|+++||+|+.++++|+.|||+++.. .++
T Consensus 385 P~~~~~~k~--yP~i~~~hGGP~~~~~-------------~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~ 449 (620)
T COG1506 385 PPGFDPRKK--YPLIVYIHGGPSAQVG-------------YSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDW 449 (620)
T ss_pred CCCCCCCCC--CCEEEEeCCCCccccc-------------cccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhcc
Confidence 999987765 9999999999843221 1122457789999999999999999999998764 355
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc---------
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE--------- 806 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~--------- 806 (958)
+...++|++++++++.+++.+|++||+|+|+||||+|+++++++.| +|+|+++..+.+++..........
T Consensus 450 g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (620)
T COG1506 450 GGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENG 528 (620)
T ss_pred CCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhC
Confidence 6678999999999999999999999999999999999999999996 899998888877755433222111
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
....+ +.+.|.+.||+.+++++++|+|||||++|.+|| .+|+++|+++|+..|+++++++||+++|++..+++....
T Consensus 529 ~~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~ 605 (620)
T COG1506 529 GGPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKV 605 (620)
T ss_pred CCccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHH
Confidence 11222 677899999999999999999999999999999 999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHhhcc
Q 002164 887 LWETDRWLQKYCVS 900 (958)
Q Consensus 887 ~~~i~~fl~~~l~~ 900 (958)
++++++||.+|++.
T Consensus 606 ~~~~~~~~~~~~~~ 619 (620)
T COG1506 606 LKEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=7.8e-41 Score=393.55 Aligned_cols=524 Identities=15% Similarity=0.094 Sum_probs=346.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....|||||++|+|..+.. +++..+|+++++++|+ ...+. .. -..++|++||+.|+|+......
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~----G~E~~~l~v~d~~tg~~l~~~i~---~~-----~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFL----SRRQYGIRFRNLETGNWYPELLD---NV-----EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCC----CcEEEEEEEEECCCCCCCCcccc---Cc-----ceEEEEeeCCCEEEEEEecCCC
Confidence 466688999999999998644 7788999999999886 23331 11 1258999999999988331100
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--eeeecCCC--cccc-ccccCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP--AVYT-SLDPSP 341 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--~~~~l~~~--~~~~-~~~~Sp 341 (958)
. ...++|+.++ ++ +.+.|... .... ....+.
T Consensus 196 ~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~ 232 (686)
T PRK10115 196 L-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT 232 (686)
T ss_pred C-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC
Confidence 0 1246999999 77 44555543 2121 223344
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
||+++++.+... ..+++++++.+-.
T Consensus 233 d~~~l~i~~~~~----------~~~~~~l~~~~~~--------------------------------------------- 257 (686)
T PRK10115 233 SKHYVVIHLASA----------TTSEVLLLDAELA--------------------------------------------- 257 (686)
T ss_pred CCCEEEEEEECC----------ccccEEEEECcCC---------------------------------------------
Confidence 888777555332 1234555543200
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
.+..+.+........ ......+..+++.++.+..+.+|..+++... .+.+.+...
T Consensus 258 -----------------------~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~ 312 (686)
T PRK10115 258 -----------------------DAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPP 312 (686)
T ss_pred -----------------------CCCceEEEECCCCCE-EEEEeCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECC
Confidence 000000000000000 0001112445555554444566777776532 222333322
Q ss_pred CC-ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeE
Q 002164 502 SS-EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (958)
Q Consensus 502 ~~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~ 580 (958)
.. ..+.+ +.++ +++|++.... ....+|+++++++++.+.|.-.... ..
T Consensus 313 ~~~~~i~~------~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~-----~~ 361 (686)
T PRK10115 313 RENIMLEG------FTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA-----YV 361 (686)
T ss_pred CCCCEEEE------EEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc-----eE
Confidence 11 11111 3344 4456655532 2345688999877777666522211 01
Q ss_pred eecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecC
Q 002164 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPP 660 (958)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~ 660 (958)
..++ .+..+++..+++..++...|.++|.+++.+++.++|+..+.+...-..+.++.+++++.||.+|++++++|+
T Consensus 362 ~~~~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~ 437 (686)
T PRK10115 362 TWIA----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHR 437 (686)
T ss_pred eeec----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEEC
Confidence 1111 122356788999999999999999999999988889976543222235688999999999999999766654
Q ss_pred CCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHH
Q 002164 661 GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVE 737 (958)
Q Consensus 661 ~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~ 737 (958)
+... .++.|+||++|||+..+..+ .| ....+.|+++||+|+.++.||+.|+|+.+... ....
T Consensus 438 ~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~ 502 (686)
T PRK10115 438 KHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKK 502 (686)
T ss_pred CCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCC
Confidence 4322 23579999999997543221 12 23356899999999999999999999987643 1223
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC------CC--cccccch
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP------FG--FQNEDRT 809 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~------~~--~~~~~~~ 809 (958)
..++|++++++||++++++|++|++++|.|+||+|+.+++.++|++|+|+|+..|++|+.... .. ...+.+.
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~ 582 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGN 582 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCC
Confidence 579999999999999999999999999999999999999999999999999999999865321 11 1122344
Q ss_pred hhhc--HHHHHhcCcccccCCCCCC-EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe---CCCCccCC-Cccc
Q 002164 810 LWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL---PFESHGYA-ARES 882 (958)
Q Consensus 810 ~~~~--~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~---p~~~H~~~-~~~~ 882 (958)
+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.+++++|+..+++++++++ +++||+.. ....
T Consensus 583 p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~ 660 (686)
T PRK10115 583 PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFK 660 (686)
T ss_pred CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHH
Confidence 5432 3445679999999999999 6778999999999 99999999999999999898888 99999842 1222
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 002164 883 IMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 883 ~~~~~~~i~~fl~~~l~~ 900 (958)
..+.....+.|+...+..
T Consensus 661 ~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 661 SYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 233444568888887754
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-30 Score=302.03 Aligned_cols=325 Identities=26% Similarity=0.296 Sum_probs=243.2
Q ss_pred CCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCce-EEEEECCCCC-eeEeecCC
Q 002164 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQ-YYIQSWPDKK-SCQITDFP 628 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~-~~~~d~~~g~-~~~Lt~~~ 628 (958)
..+||..++.++....++..... ...+.+ ..+++...+.+++.+.++..|.. +-+......+ ...|. .+
T Consensus 413 ~~~ly~i~~~~~~~~~lt~~~~~---~~~~~~-----~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~n 483 (755)
T KOG2100|consen 413 ERHLYSISLGSGTVESLTCSLIT---GPCTYL-----SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLE-TN 483 (755)
T ss_pred ceEEEEEEccccccccccccCCC---CcceEE-----EEecCCcccEEEEEccCCCCCcceeeccccccceEEEEec-cC
Confidence 45799999988877776654431 011111 24566677888888888887743 2222211111 22233 22
Q ss_pred CCCC----CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH
Q 002164 629 HPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS 704 (958)
Q Consensus 629 ~~~~----~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (958)
..+. .......+..++.. +|....+.+.+|+++++.+ ++|+||.+||||.. ........ ..+ .
T Consensus 484 ~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-q~v~~~~~--------~~~-~ 550 (755)
T KOG2100|consen 484 EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-QSVTSKFS--------VDW-N 550 (755)
T ss_pred hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-ceeeeeEE--------ecH-H
Confidence 2221 22222333334444 8999999999999998877 49999999999852 11111111 111 1
Q ss_pred HHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002164 705 VLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (958)
Q Consensus 705 ~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (958)
...+..+|++|+.+|++|..|+|..+. ..+.+..++.|+..++.++.+++++|.+||+|+|+|+||+|+++++.++|
T Consensus 551 ~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~ 630 (755)
T KOG2100|consen 551 EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDP 630 (755)
T ss_pred HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCc
Confidence 224567999999999999999998854 45666788999999999999999999999999999999999999999997
Q ss_pred -CceeEEEEeccCCCCCCCCCCccccc-chhhhcHHHHHhcCcccccCCCCCCE-EEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 782 -HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSANKLKKPI-LLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 782 -~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~~~~P~-Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
+.|+|+++++|++|+.+..-.+.... +.++++...|.+.++...++.++.|. |++||+.|.+|+ ++++.+++++|
T Consensus 631 ~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh--~q~s~~~~~aL 708 (755)
T KOG2100|consen 631 GDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH--FQQSAILIKAL 708 (755)
T ss_pred CceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--HHHHHHHHHHH
Confidence 78999999999999885444333332 44566666699999999999998877 999999999999 99999999999
Q ss_pred HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+|+++++++||+++|++.......+++..+..||..++.
T Consensus 709 ~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 709 QNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred HHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 99999999999999999998888888999999999996553
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=284.11 Aligned_cols=350 Identities=20% Similarity=0.225 Sum_probs=269.8
Q ss_pred CCceEEEEeee--ccCCCcEEEEccCCCCCCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCC
Q 002164 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (958)
Q Consensus 520 dG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (958)
.|+|-+-..++ .|+...-+|+.+..++|-.. +||+...+ .|+..+|+...-. . ...++.+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE~--hLyvvsye~~g~~~rlt~~g~s------h-------~~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLEH--HLYVVSYENPGEIARLTEPGYS------H-------SCELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCcee--eEEEEEEecCCceeeccCCCcc------c-------chhhhhhhh
Confidence 45555555544 56677778888888777554 79998887 8999999976521 0 122454555
Q ss_pred EEEEEEecCCCCceEEEEECCCCCeeEeecCC--------CCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCC
Q 002164 597 KILTSKESKTENTQYYIQSWPDKKSCQITDFP--------HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (958)
Q Consensus 597 ~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~--------~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~ 668 (958)
.++..+++-..|+.+.++.+.+++...|-... ...+.....+.|.+.+.+..|..++|.+|+|.+++++++
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 57777788888888777777665433322110 011122223347888898889999999999999999886
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEA 745 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~ 745 (958)
+|+|+++||||.. |+.. |.|.+.-......||++||+|+.+|.+|+.-.|..+. ...++..+++|..+
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999843 3333 4666665555668999999999977777765665543 24455667999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccccc-chhhhcHHHHHhcCcc
Q 002164 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPF 823 (958)
Q Consensus 746 av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~ 823 (958)
++++|.++ +++|.+||+|.|+||||+|+++.++++|+.|+++|+.+|+.+|.+++-++.... +.+-.+...|..-|..
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 599999999999999999999999999999999999999999888776665432 3444566677777777
Q ss_pred cccCCCC---CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 824 ~~~~~~~---~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.++.++. ..+|++||--|.+|. +.+..++..+|-++|++.++++||++.|.+...+....+-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7777774 459999999999999 9999999999999999999999999999998888888888889988875
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-26 Score=252.39 Aligned_cols=302 Identities=20% Similarity=0.211 Sum_probs=220.9
Q ss_pred CCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCC
Q 002164 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH 629 (958)
Q Consensus 550 ~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~ 629 (958)
..++|++++..+++...|.-.+.. |... + ..+-..+...+++..+|.++|.++|-+|+.+++.++|.+..-
T Consensus 338 glp~v~v~~~~~~~~~~i~f~~~a-y~~~----l----~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV 408 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIAFDDEA-YSAG----L----SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEV 408 (682)
T ss_pred CCceEEEEecCCCceeeEEecchh-hhcc----c----cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccC
Confidence 356899999988877765433321 1111 1 112234677999999999999999999999999999997653
Q ss_pred CC-CCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH
Q 002164 630 PY-PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (958)
Q Consensus 630 ~~-~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (958)
+- .+...+.+++++.+..||++|+..|+.-+++ ..+++.|++|+.||.+..+.++ .|+ .....|
T Consensus 409 ~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p---------~Fs----~~~lSL 473 (682)
T COG1770 409 PGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDP---------SFS----IARLSL 473 (682)
T ss_pred CCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCc---------Ccc----cceeee
Confidence 32 2344577899999999999999999987763 3456799999999976554432 222 223468
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccch-hhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 002164 709 LARGFAILGGPTTPIIGEGDEEAND-RFV--EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~-~~~--~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (958)
+.+||+......||..-.|+.+... ... .+-+.|+++|+++|.++++.++++|+++|.|+||.+..+++.+.|++|+
T Consensus 474 lDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~ 553 (682)
T COG1770 474 LDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFA 553 (682)
T ss_pred ecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhh
Confidence 8999877665555443344443221 111 2458999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCC----cccccchhhhcH------HHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHH
Q 002164 786 CGIARSGAYNRTLTPFG----FQNEDRTLWEAT------STYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
++|+..|+.|...++.. +...+..-|.+| +.+..+||..++..-. +|+|++.|.+|++|. +++..++
T Consensus 554 ~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKW 631 (682)
T COG1770 554 GIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKW 631 (682)
T ss_pred heeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHH
Confidence 99999999874433211 111222234332 4456789999988754 578899999999999 9999999
Q ss_pred HHHHHhCCC---cEEEEEeCCCCccC
Q 002164 855 FNALKGHGA---LCRLVILPFESHGY 877 (958)
Q Consensus 855 ~~~l~~~g~---~~~~~~~p~~~H~~ 877 (958)
.++|+..+. ++-|.+-.++||+-
T Consensus 632 vAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 632 VAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHhhcccCCCcEEEEecccccCCC
Confidence 999998653 45566656889963
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.95 E-value=2.7e-27 Score=242.75 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=165.8
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
..+.|+++||+|+.++++++.|+|..+.. ..+....++|+.+++++|++++.+|++||+|+|+|+||++|+.++.++
T Consensus 6 ~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~ 85 (213)
T PF00326_consen 6 NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQH 85 (213)
T ss_dssp HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhccc
Confidence 46688999999999999999999887543 455678899999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccCCCCCCCCCC---ccc----ccchhhhcHHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCChHHH
Q 002164 781 PHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
|++|+++|+.+|+++....... +.. ....++...+.|...+|+..+.+ +++|+||+||++|.+|| +.++
T Consensus 86 ~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s 163 (213)
T PF00326_consen 86 PDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQS 163 (213)
T ss_dssp CCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THHH
T ss_pred ceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHHH
Confidence 9999999999999886543211 111 12334456778888899999988 89999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
.+++++|+..|+++++++||+++|.+...++..++..++++||+++|++
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988888889999999999999964
No 7
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=5e-24 Score=239.36 Aligned_cols=285 Identities=14% Similarity=0.117 Sum_probs=196.0
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
+.+.+-..-...+.++ |++|||+... .+.+.+... ..||+.+. || +..++
T Consensus 130 ~~D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~~ 179 (428)
T PRK01029 130 AADTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLRP 179 (428)
T ss_pred HHHHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCceE
Confidence 3444433344556666 9999999864 222322222 48999887 55 67788
Q ss_pred eccCCCCCcccceeecCCCCe--EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~--iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
||. ....+..|+|||||++ ++|++. .++..+||++++++|+.++++..+.. ...++|||||+.|+
T Consensus 180 lt~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~La 246 (428)
T PRK01029 180 LTQ--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLLA 246 (428)
T ss_pred ccc--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEEE
Confidence 875 2346789999999998 455654 44678999999999999999886664 34799999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE--EEc-C---CeeeecCCC--
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP-- 331 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~--~~~-~---g~~~~l~~~-- 331 (958)
|+.... +..++|+ +++ + |+.++++..
T Consensus 247 f~s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 247 FISDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCCC
Confidence 983210 1123444 344 3 466777754
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
.....++|||||++|+|++...+ ..++|+++++ ++..+.++... .....+.||||
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-------------~~~~~p~wSPD 337 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-------------RNSSCPAWSPD 337 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC-------------CCccceeECCC
Confidence 34578999999999999985421 2378888876 34566666532 12346889999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
|+.|+|.... .....|+++++ ++++.++++.....+..+.|||||+.|+|.....+. ..||.++++
T Consensus 338 G~~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~-~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE-SELYLISLI 403 (428)
T ss_pred CCEEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECC
Confidence 9999996322 12357999995 778888887666567789999999999998765443 689999998
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCC
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG 521 (958)
++ +...++..... ... ++|||-.
T Consensus 404 ~g--~~~~Lt~~~g~-~~~------p~Ws~~~ 426 (428)
T PRK01029 404 TK--KTRKIVIGSGE-KRF------PSWGAFP 426 (428)
T ss_pred CC--CEEEeecCCCc-ccC------ceecCCC
Confidence 85 44555543222 111 6788754
No 8
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.3e-22 Score=229.26 Aligned_cols=228 Identities=15% Similarity=0.155 Sum_probs=172.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...++++. ....+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999988 44 55677764 2346889999999999999864 33467999999999999998866553
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+|+... + +..+||++++
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 2346999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....+.|||||++|+|++++.. ..+||+++++++..++++... ..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~-------------~~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888899876 56789999999999999986531 237889999988877776422 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... .....|+++++ +++..+.|+.. .....+.|||||+.|+|.+..++.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~- 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMG- 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 2467899999999985321 12346899985 67777778743 345679999999999999876543
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..|+++++++.
T Consensus 398 ~~l~~~~~~G~ 408 (429)
T PRK03629 398 SVLNLVSTDGR 408 (429)
T ss_pred eEEEEEECCCC
Confidence 67999999874
No 9
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.2e-22 Score=231.28 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=173.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTD--GSSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEec--CCCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 48999987 44 56677874 3346899999999999999874 33468999999999999988866543
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999887210 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++|+.. .....+.|||||++|+|.+++.+ ..+|+++|++++..++++... ..
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~-------------~~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGG-------------GR 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCC-------------Cc
Confidence 8888999876 55678999999999999985432 238999999988888887532 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc-
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR- 479 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~- 479 (958)
...+.|||||+.|+|.... .....|+++++ +++..+.++.. ..+..+.|||||+.|+|.....+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~----------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQG----------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEcC----------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 3457899999999986321 12346889985 66666666543 456789999999999998865443
Q ss_pred -ceEEEEEcCCCC
Q 002164 480 -RTRTWVISPGSK 491 (958)
Q Consensus 480 -~~~l~~~~~~~~ 491 (958)
..+||+++++++
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 157999999885
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.8e-22 Score=226.86 Aligned_cols=265 Identities=17% Similarity=0.154 Sum_probs=184.8
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE--EEEecCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPPK 271 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l--~~~~~~~~~~~~~ 271 (958)
+..+ +++|||+....+...+....+||++|.+|+.+++||..... ..+|+|||||+.+ +|++..
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~------- 207 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYK------- 207 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEcc-------
Confidence 4455 89999998654333333467999999999999999986553 4589999999874 444110
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
. +..+||++++ +|+.++|+.. +....+.|||||++|+|+
T Consensus 208 -------------------------------~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 208 -------------------------------L--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred -------------------------------C--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 0 3468999999 8888888876 556689999999999999
Q ss_pred eecCCccccccCCCCCceeEE--EeccC---ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 350 SIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l--~d~~~---~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++..+ ..++++ |++++ +..++++.... .....+.|||||+.|+|..+.
T Consensus 249 s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~----- 301 (428)
T PRK01029 249 SDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK----- 301 (428)
T ss_pred ECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC-----
Confidence 85422 114555 45553 45566664321 112467899999999996432
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
++..+||+++++ ..++..+.++.....+..+.|||||++|+|....++ ..+||+++++++ +.+.++....
T Consensus 302 -----~g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~- 371 (428)
T PRK01029 302 -----DGRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPE- 371 (428)
T ss_pred -----CCCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCC-
Confidence 223468988751 124456777766556678999999999999976554 368999999885 4455543321
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
.... +.|||||++|+|.... .....||++|+++++.++|+...+
T Consensus 372 ~~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 372 NKES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred Cccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCCC
Confidence 1111 7799999999998631 123469999999999999986554
No 11
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.91 E-value=1.2e-21 Score=210.46 Aligned_cols=288 Identities=19% Similarity=0.206 Sum_probs=224.8
Q ss_pred ccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCc
Q 002164 591 LYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPL 670 (958)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~ 670 (958)
-+.+|..+++...+...|+.+|+.+..+++.+.+...... .+-..+.++.+..++.||++|+..++. ++.+.. +.
T Consensus 347 ~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~ 421 (648)
T COG1505 347 ADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-FDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---EN 421 (648)
T ss_pred CCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-cCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CC
Confidence 3457889999999999999999999999888888865432 234456788888999999999999998 664332 48
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av 747 (958)
|++|+.|||...+. .| .|. .....|.++|.+.+..+.||..-+|..+..... -.+.++|..+++
T Consensus 422 pTll~aYGGF~vsl--------tP-~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 422 PTLLYAYGGFNISL--------TP-RFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred ceEEEecccccccc--------CC-ccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 99999999863322 22 222 223789999998888788877777877553222 346799999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-----CCcccccchh--hhcHHHHHhc
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FGFQNEDRTL--WEATSTYVEM 820 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~ 820 (958)
+.|+++++..|+++++.|.|-||.++..++.+.|+.|.|+|+..|+.|+.-+. +.+..+.+.+ -++...+.++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~Y 568 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAY 568 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998854321 1122222222 2334567789
Q ss_pred CcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHh
Q 002164 821 SPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKY 897 (958)
Q Consensus 821 sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~fl~~~ 897 (958)
||+.+++.-+ .|+||..+.+|.+|. |.|+++|+.+|+..+.++-+.+--++||+-..+... ......++.||.+.
T Consensus 569 SPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~ 646 (648)
T COG1505 569 SPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRT 646 (648)
T ss_pred CchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHh
Confidence 9999988743 699999999999999 999999999999999988887777889987544332 34556678888887
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
|
T Consensus 647 L 647 (648)
T COG1505 647 L 647 (648)
T ss_pred h
Confidence 6
No 12
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.8e-22 Score=222.22 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=172.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCe-EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~-iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
.+||+.|. || ...++++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++++..++.
T Consensus 169 ~~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~- 234 (419)
T PRK04043 169 SNIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM- 234 (419)
T ss_pred ceEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc-
Confidence 37899887 55 55666653 23 6778999999997 666553 22356999999999999999875542
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+.|||||+.|+++... + +..+||++++
T Consensus 235 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl 264 (419)
T PRK04043 235 ----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDT 264 (419)
T ss_pred ----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEEC
Confidence 3468899999999987211 0 3467999999
Q ss_pred -CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+|+.++|+.. .....+.|||||++|+|++++.+ ..+|+++++++++.++++...
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g-------------- 320 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG-------------- 320 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC--------------
Confidence 8888999876 44568899999999999996532 248999999998888877521
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.....|||||+.|+|.....+.. . ......||++++ +++..+.|+... ....+.|||||+.|+|....++
T Consensus 321 -~~~~~~SPDG~~Ia~~~~~~~~~-~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~- 390 (419)
T PRK04043 321 -KNNSSVSTYKNYIVYSSRETNNE-F---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGN- 390 (419)
T ss_pred -CcCceECCCCCEEEEEEcCCCcc-c---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCC-
Confidence 11347999999999975432110 0 012357999995 778888887753 4457999999999999987644
Q ss_pred ceEEEEEcCCCC
Q 002164 480 RTRTWVISPGSK 491 (958)
Q Consensus 480 ~~~l~~~~~~~~ 491 (958)
...|+.+++++.
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 478999999884
No 13
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=199.94 Aligned_cols=370 Identities=16% Similarity=0.151 Sum_probs=225.1
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
+||.+++++ ++.++||. +-+.+..|.+||||++|||++-- ........+||+++.++|+++++|..+.. .
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f- 129 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F- 129 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c-
Confidence 899999976 77788875 33578999999999999995521 12234467999999999999999988532 1
Q ss_pred ccccceEEecCCeEEEEEec--------------CCCCCCCCCCCCCCCCc-----------------------------
Q 002164 244 AIFDNFVWVNNSTLLVCTIP--------------LLRGDPPKKPLVPLGPK----------------------------- 280 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~--------------~~~~~~~~~~~~~~~~~----------------------------- 280 (958)
..-..|+|||+.|+++-. ..+....+....|....
T Consensus 130 --T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGk 207 (668)
T COG4946 130 --TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGK 207 (668)
T ss_pred --ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccce
Confidence 234569999999998711 11111222222222211
Q ss_pred -eeeecCCcccccchhhhhccCchhh--------hHHHHhhcceEEEEEcCC-eeeecCCCccccccccCCCCcEEEEEe
Q 002164 281 -MQSNEKRDIIQVRTFQDLLKDEYDE--------DLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISS 350 (958)
Q Consensus 281 -~~~~~~~~~~~~r~~~d~~~~~~~~--------~~~~~~~~~~l~~~~~~g-~~~~l~~~~~~~~~~~SpDGk~l~~~~ 350 (958)
|.+.++++.... +.|+-.+-..+ -+.++.+.++||.+|++| .+++-|+...+..-..+.|||+|+|+.
T Consensus 208 lWis~d~g~tFeK--~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~ 285 (668)
T COG4946 208 LWISSDGGKTFEK--FVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN 285 (668)
T ss_pred EEEEecCCcceee--eeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec
Confidence 112222211000 00000000000 011233678899999955 677777764444455688999999997
Q ss_pred ecCCccccccCCCCCceeEEEeccCceEEEeccC-Ccc--ccCcccccccccCcceeeeec-CCCCceEEEEe-------
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLA--EDIPIAFNSVRKGMRSINWRS-DKPSTLYWAET------- 419 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~-~~~--~~~p~~~~~~~~~~~~~~~sp-DG~~l~~~~~~------- 419 (958)
.++||++|.++...+.|... |.. ..++...+.. ..... |++ +|..|++.+..
T Consensus 286 --------------~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps-kyled--fa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 286 --------------AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS-KYLED--FAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred --------------CCcEEEeCCCcCcceeeecCCccccccccccccCHH-Hhhhh--hccCCCcEEEEEecCcEEEECC
Confidence 34999999998877776543 433 1222211111 00000 111 23333332110
Q ss_pred --------------------ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 420 --------------------QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 420 --------------------~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.++.....-....+.|-+++. +|++.+.+...-+.+..+..|+||++++.+. .
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----d 421 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----D 421 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----C
Confidence 011100011112235667774 7778788877778888999999999988763 3
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
+.+||++|++++ . ..+.+.+...+..+ +.|+|+++|++|.... ++ -..+|.++|+
T Consensus 422 r~el~vididng--n-v~~idkS~~~lItd-----f~~~~nsr~iAYafP~-----gy------------~tq~Iklydm 476 (668)
T COG4946 422 RFELWVIDIDNG--N-VRLIDKSEYGLITD-----FDWHPNSRWIAYAFPE-----GY------------YTQSIKLYDM 476 (668)
T ss_pred ceEEEEEEecCC--C-eeEecccccceeEE-----EEEcCCceeEEEecCc-----ce------------eeeeEEEEec
Confidence 478999999996 3 33444444443322 8899999999999731 11 1236999999
Q ss_pred CCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCC
Q 002164 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTEN 608 (958)
Q Consensus 560 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p 608 (958)
++++...+|...+.+ -.++|.|||++|+|.....-.|
T Consensus 477 ~~~Kiy~vTT~ta~D------------fsPaFD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 477 DGGKIYDVTTPTAYD------------FSPAFDPDGRYLYFLSARSLDP 513 (668)
T ss_pred CCCeEEEecCCcccc------------cCcccCCCCcEEEEEeccccCC
Confidence 999999998766431 2478999999998876655444
No 14
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.1e-21 Score=222.02 Aligned_cols=228 Identities=18% Similarity=0.175 Sum_probs=169.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...++++. ....+..|+|||||++|+|++. .++..+||++++.+|+.++++..+..
T Consensus 176 ~~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~-- 241 (427)
T PRK02889 176 YQLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS-- 241 (427)
T ss_pred cEEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 44 45566654 3346889999999999999874 34567899999999999888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 242 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 272 (427)
T PRK02889 242 ---NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNAD 272 (427)
T ss_pred ---ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999986211 0 3357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..++++.. .....+.|||||++|+|++++.. ..+||+++++++..++++... ..
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~~ 329 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------SY 329 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------CC
Confidence 7788888876 55678999999999999875421 237888888877777776321 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... +....|+++++ ++++.+.++... ....+.|||||+.|+|..+.++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~- 394 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGR- 394 (427)
T ss_pred cCceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCCC-
Confidence 2357899999999986322 12336899995 666777776543 34689999999999999887654
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..|+.+++++.
T Consensus 395 ~~l~~~~~~g~ 405 (427)
T PRK02889 395 SVLAAVSSDGR 405 (427)
T ss_pred EEEEEEECCCC
Confidence 78999999763
No 15
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.8e-21 Score=220.74 Aligned_cols=228 Identities=18% Similarity=0.148 Sum_probs=170.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|++++. || ...+.++. ....+..|.|||||++|+|+.. .++..+||++++++|+.++++..+..
T Consensus 198 ~~l~i~d~--dG--~~~~~l~~--~~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~-- 263 (448)
T PRK04792 198 YQLMIADY--DG--YNEQMLLR--SPEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI-- 263 (448)
T ss_pred eEEEEEeC--CC--CCceEeec--CCCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC--
Confidence 37888886 44 55667764 2346889999999999999874 34567999999999998888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 264 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~ 294 (448)
T PRK04792 264 ---NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIA 294 (448)
T ss_pred ---cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECC
Confidence 3478999999999987211 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....+.|||||++|+|++.... ..+++++++++++.++|+... ..
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g-------------~~ 351 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEG-------------EQ 351 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCC-------------CC
Confidence 8888888876 55678999999999999985432 238999999988888776321 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... .....||++++ ++++.+.++... ....+.|||||+.|+|....++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~- 416 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGK- 416 (448)
T ss_pred CcCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCc-
Confidence 2346899999999985322 22346888985 677777776543 34578999999999999876653
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..||.++.++.
T Consensus 417 ~~l~~~~~~G~ 427 (448)
T PRK04792 417 QVLAAVSIDGR 427 (448)
T ss_pred eEEEEEECCCC
Confidence 67999998764
No 16
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.4e-21 Score=222.07 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=171.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||++|. +| ...++|+. .+..+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILR--SAEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeec--CCCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 47999987 33 55677764 2346889999999999999864 33467899999999999888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~--------------------~--------------------------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR--------------------D--------------------------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC--------------------C--------------------------CCceEEEEECC
Confidence 4478999999999887210 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....++|||||++|+|++++.+ ..++|+++++++..++++... ..
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g-------------~~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQG-------------NY 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888888876 45568999999999999985432 237999999888777776422 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... +....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ .
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~----------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~g-~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGS----------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREGG-R 402 (433)
T ss_pred ccCEEECCCCCEEEEEECC----------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 2357899999999996321 12337899995 667777776543 3567899999999999987654 3
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..||.++++++
T Consensus 403 ~~L~~~~~~g~ 413 (433)
T PRK04922 403 GVLAAVSTDGR 413 (433)
T ss_pred eEEEEEECCCC
Confidence 78999999874
No 17
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3.2e-21 Score=219.47 Aligned_cols=255 Identities=15% Similarity=0.155 Sum_probs=185.7
Q ss_pred CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002164 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
+.+|||+.... .......+||++|.+|+..+++|..... +..++|||||+.|+|+....
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~~-------------- 223 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYAN-------------- 223 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEecC--------------
Confidence 46899987532 0011267999999999999999876543 67899999999999982110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 224 --------------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 268 (435)
T PRK05137 224 --------------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG--- 268 (435)
T ss_pred --------------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---
Confidence 2357999999 8888888765 56678999999999999875421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+||++|++++..++|+..+.. ...+.|||||+.|+|..+. ....+||+
T Consensus 269 -------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 269 -------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred -------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 24799999999888888765422 2457899999999996432 22457999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (958)
+++ ++++.++++.....+..+.|||||++|+|.....+ ..+|++++++++ ....++... .... ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~~~------p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LVEG------PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CCCC------CeE
Confidence 995 77888888876666777999999999999875443 368999998764 333443321 1111 679
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
||||++|+|..... +. . ....||++|+++++.++|..
T Consensus 385 spDG~~i~~~~~~~------------~~--~-~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 385 APNGRVIMFFRQTP------------GS--G-GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCCCEEEEEEccC------------CC--C-CcceEEEEECCCCceEEccC
Confidence 99999999987321 00 0 02479999999888877753
No 18
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.8e-21 Score=216.45 Aligned_cols=252 Identities=17% Similarity=0.178 Sum_probs=184.8
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
++|||+.... ++....+||++|.+|+..++++..... +..++|||||+.|+|++...
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~--------------- 220 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 220 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC---------------
Confidence 7899987632 123467999999999998999876543 56899999999999872110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 221 -------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---- 265 (429)
T PRK03629 221 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---- 265 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----
Confidence 2357999999 8888888765 55678999999999999864321
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+|++||++++..++++.... ....+.|||||+.|+|..+. ....+||++
T Consensus 266 ------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 266 ------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred ------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 2379999999888888876431 23568899999999996432 223479999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ ++++.++++........+.|||||++|+|....++. .+||+++++++ +.+.++... .+ .. ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~-~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDLATG--GVQVLTDTF-LD-----ET--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-ceEEEEECCCC--CeEEeCCCC-CC-----CC--ceEC
Confidence 85 677778886655556679999999999998765543 67999999875 444554321 11 11 6799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||++|+|.... +....|++++++++..++|...+
T Consensus 383 pDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~~~ 417 (429)
T PRK03629 383 PNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATD 417 (429)
T ss_pred CCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECccCC
Confidence 999999998742 11236999999888778776533
No 19
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.3e-20 Score=197.25 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=209.8
Q ss_pred cCCEEEEEEecCCCCceEEEEECCCCCe--eEeecCCCCCC--CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCC
Q 002164 594 NQLKILTSKESKTENTQYYIQSWPDKKS--CQITDFPHPYP--QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGP 669 (958)
Q Consensus 594 dg~~l~~~~~s~~~p~~~~~~d~~~g~~--~~Lt~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~ 669 (958)
+.+.+.|...|+..|+.||.+|+..|+. ..+.+....++ .-..+.++.+.+++.||++++..++.-+.. +..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcCC
Confidence 4678999999999999999999998843 23333333333 344568999999999999999999985443 23456
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhH---HHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFV---EQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~---~~~~~D~~~a 746 (958)
.|++|+.||++..+.++.+... ...|..+|++....+.||..++|..+...... .+.++|.+++
T Consensus 470 ~P~LLygYGay~isl~p~f~~s-------------rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~ 536 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPSFRAS-------------RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIAC 536 (712)
T ss_pred CceEEEEecccceeeccccccc-------------eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHH
Confidence 8999999998755444322211 22467799988888888888888876543222 3569999999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC----CcccccchhhhcH---HHHHh
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEAT---STYVE 819 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~ 819 (958)
++||++++++.+++.++.|.|.||.++..++.++|++|+|+|+..|+.|...+.. ..+.....-|.++ +.+..
T Consensus 537 AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~ 616 (712)
T KOG2237|consen 537 AEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIK 616 (712)
T ss_pred HHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhhe
Confidence 9999999999999999999999999999999999999999999999988543211 1111111223333 33455
Q ss_pred cCcccccCCCC-----CCEEEEeeCCCCCCCCChHHHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCccc-HHHH
Q 002164 820 MSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMHV 886 (958)
Q Consensus 820 ~sp~~~~~~~~-----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~p~~~H~~~~~~~-~~~~ 886 (958)
++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..|+-+.+..++||+.-.... ..+-
T Consensus 617 i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E 694 (712)
T KOG2237|consen 617 ISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEE 694 (712)
T ss_pred ecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHH
Confidence 56655555553 357899999999998 99999999999874 246788889999998732211 2233
Q ss_pred HHHHHHHHHHhh
Q 002164 887 LWETDRWLQKYC 898 (958)
Q Consensus 887 ~~~i~~fl~~~l 898 (958)
....++||.+-+
T Consensus 695 ~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 695 AAFRYAFLAKML 706 (712)
T ss_pred HHHHHHHHHHHh
Confidence 344577777665
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.3e-23 Score=207.38 Aligned_cols=327 Identities=17% Similarity=0.192 Sum_probs=229.7
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002164 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (958)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (958)
.|..+|.+|+.++||. .++|++||+||+.+|.--+...|.+|+...+ .++..|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3889999999999999 8899999999999999989999998886554 67788998887
Q ss_pred CCcCCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC
Q 002164 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (958)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (958)
.+.+....++.+-+.. +++.++|||+|++||..+.+ .+..||.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD---------------------------------~Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD---------------------------------STAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC---------------------------------ceEEEEEEec
Confidence 6666665555555544 79999999999999998876 3556676766
Q ss_pred CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe
Q 002164 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 173 dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (958)
|+...-.+.+-++ ...+....||||.++|+.+.. ...+++||+++|+.+.+.....+. .+.+++|-
T Consensus 256 d~~~kl~~tlvgh--~~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~~---S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGH--SQPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLGF---SVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeecc--cCceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcCC---CcceeEEc
Confidence 6543334445443 247899999999999998753 335999999999998887655211 16699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP- 331 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~- 331 (958)
|||..++..++ ..+++..+++|....--.+
T Consensus 322 pDg~~~V~Gs~-------------------------------------------------dr~i~~wdlDgn~~~~W~gv 352 (519)
T KOG0293|consen 322 PDGFRFVTGSP-------------------------------------------------DRTIIMWDLDGNILGNWEGV 352 (519)
T ss_pred cCCceeEecCC-------------------------------------------------CCcEEEecCCcchhhccccc
Confidence 99999886621 2346677776633111111
Q ss_pred --ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 --~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+..++.++||++++.+..+ ..+.+++..+...+.+... ...+.++..|.|
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d-------------~~i~l~~~e~~~dr~lise-------------~~~its~~iS~d 406 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVD-------------KKIRLYNREARVDRGLISE-------------EQPITSFSISKD 406 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecc-------------cceeeechhhhhhhccccc-------------cCceeEEEEcCC
Confidence 346788999999999888743 3788888775544422211 134577888888
Q ss_pred CCCceEEEEec------------------------------cCCC--cccccccCCeEEEEeCCCCCCCCceEEEeeccc
Q 002164 410 KPSTLYWAETQ------------------------------DGGD--AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR 457 (958)
Q Consensus 410 G~~l~~~~~~~------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~ 457 (958)
|+.+++..... .|++ .....+++++||+|+. ..|+-...|+.+...
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKT 484 (519)
T ss_pred CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcce
Confidence 88766432211 1111 1223456778999996 455556677777888
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+.-++|+|.....+.++.+++. .+||-.+
T Consensus 485 vNcVswNP~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence 8889999987765554444432 6677543
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=9.6e-21 Score=216.18 Aligned_cols=227 Identities=14% Similarity=0.161 Sum_probs=169.8
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.|++++. +| +..++++. .+..+..|.|||||++|+|++. .++..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888877 44 55666753 3346789999999999999864 33567999999999999998765542
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~ 322 (958)
...++|||||+.|+|+.... +..+||++++ +
T Consensus 245 --~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECCC
Confidence 44799999999999872110 2357999999 8
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCc
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
|+.++++.. .....+.|||||++|+|+++..+ ..+|+++++++++.++++... ...
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NYN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CCc
Confidence 888888876 55678999999999999985432 237999999888777776421 112
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
..+.|||||+.|+|.... .....|+++++ ++++.+.|+... ....+.|||||+.|+|+++.++. .
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g~-~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQGR-G 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCCc-e
Confidence 357899999999986321 12336899995 677778887543 34578999999999999876654 7
Q ss_pred EEEEEcCCCC
Q 002164 482 RTWVISPGSK 491 (958)
Q Consensus 482 ~l~~~~~~~~ 491 (958)
+||.+++++.
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999774
No 22
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.8e-20 Score=208.87 Aligned_cols=250 Identities=15% Similarity=0.113 Sum_probs=181.1
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE-EEEEecCCCCCCCCCCCCCCCC
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL-LVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~-l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
.+|+|.... .+....+||++|.+|...++++... . ...+.|||||+. ++|++...
T Consensus 155 ~r~~~v~~~----~~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~-------------- 210 (419)
T PRK04043 155 KRKVVFSKY----TGPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGE-------------- 210 (419)
T ss_pred eeEEEEEEc----cCCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccC--------------
Confidence 466666531 1224689999999999888887653 2 458999999985 77662110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.++|+.. +....+.|||||++|+|+....+
T Consensus 211 --------------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g--- 255 (419)
T PRK04043 211 --------------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG--- 255 (419)
T ss_pred --------------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC---
Confidence 1357999999 9999999866 55567899999999999985421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+||+++++++..++|+..+..+ ..+.|||||++|+|..+. .+..+||+
T Consensus 256 -------~~~Iy~~dl~~g~~~~LT~~~~~d-------------~~p~~SPDG~~I~F~Sdr----------~g~~~Iy~ 305 (419)
T PRK04043 256 -------QPDIYLYDTNTKTLTQITNYPGID-------------VNGNFVEDDKRIVFVSDR----------LGYPNIFM 305 (419)
T ss_pred -------CcEEEEEECCCCcEEEcccCCCcc-------------CccEECCCCCEEEEEECC----------CCCceEEE
Confidence 348999999999899998765322 346799999999997543 23457999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc-----cceEEEEEcCCCCCCCcEEEeccCCccccCCCCC
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-----RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (958)
+++ ++++.++++.... ..+.|||||+.|+|...... ...+||+++++++ ..+.++.... . .
T Consensus 306 ~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-~-----~- 371 (419)
T PRK04043 306 KKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-N-----Q- 371 (419)
T ss_pred EEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC-c-----C-
Confidence 996 7788877865322 23699999999999986432 2268999999885 4556654321 1 1
Q ss_pred CceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
.++|||||+.|+|.... +....|+.+++++.+..+|....+
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeecCCC
Confidence 17799999999998732 223469999998877777765443
No 23
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=2.3e-20 Score=211.67 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=158.7
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...+.++.. ...+..|.|||||++|+|++. +++..+||++++.+|+.++++.....
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNRS--SQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEeccC--CCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 48999987 44 445666642 246899999999999999864 33567899999999988877655442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 0 2346999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+++.++++.. ..+..+.|||||++|+|++++.+ ..+||.++..++..+.++. .+
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~---------------~~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG---------------RG 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC---------------CC
Confidence 7888888876 66788999999999999985422 2267777776665555421 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
..+.|||||+.|++. . .+.++++|+ .+++.+.++.. .....+.|||||+.|+|.+..++.
T Consensus 336 -~~~~~SpDG~~ia~~-------------~-~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~- 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------N-GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG- 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------c-CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 246799999999884 1 245777885 56666666533 345679999999999999875543
Q ss_pred eEEEEEcCCC
Q 002164 481 TRTWVISPGS 490 (958)
Q Consensus 481 ~~l~~~~~~~ 490 (958)
..++.++.++
T Consensus 396 ~~l~~~~~~G 405 (429)
T PRK01742 396 KVLQLVSADG 405 (429)
T ss_pred eEEEEEECCC
Confidence 4466667666
No 24
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=7e-20 Score=207.68 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=181.0
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+|+|+.... ......+||++|.+|...+.++..... +..+.|||||+.|+|+....
T Consensus 183 ~riayv~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~~--------------- 239 (448)
T PRK04792 183 TRIAYVVVND---KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFEN--------------- 239 (448)
T ss_pred CEEEEEEeeC---CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEecC---------------
Confidence 5788876422 122356899999999888888876653 56899999999999882110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 240 -------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---- 284 (448)
T PRK04792 240 -------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---- 284 (448)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----
Confidence 2357999999 8888888765 44568999999999999874421
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+|+++|+++++.++++.... ....+.|||||+.|+|..+. ....+||++
T Consensus 285 ------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~I~f~s~~----------~g~~~Iy~~ 335 (448)
T PRK04792 285 ------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKSLIFTSER----------GGKPQIYRV 335 (448)
T ss_pred ------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCEEEEEECC----------CCCceEEEE
Confidence 2479999999888888876432 12467899999999996432 234579999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ ++++.+.++........+.|||||++|+|.....+ ..+||+++++++ +...++.... + .. ++|+
T Consensus 336 dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g-~~~I~~~dl~~g--~~~~lt~~~~-d-----~~--ps~s 401 (448)
T PRK04792 336 NL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG-KFNIARQDLETG--AMQVLTSTRL-D-----ES--PSVA 401 (448)
T ss_pred EC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC-ceEEEEEECCCC--CeEEccCCCC-C-----CC--ceEC
Confidence 95 67777778644333456899999999999876543 368999999885 3444443211 1 12 5799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||++|+|.... .....|++++++++..+++....
T Consensus 402 pdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 402 PNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 999999998732 12336999999877777776543
No 25
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=5.2e-20 Score=208.37 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=178.0
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+|+|+.. ..+..+||++|.+|...++++..... +..++|||||+.|+|++...
T Consensus 164 ~~iayv~~------~~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIK------TGNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEc------cCCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEccC---------------
Confidence 57999863 23467899999988888888765543 66899999999999982110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 218 -------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---- 262 (427)
T PRK02889 218 -------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG---- 262 (427)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----
Confidence 2356999999 8888888755 55678999999999999864421
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+||++|++++..++|+..... ...+.|||||+.|+|..+. ....+||.+
T Consensus 263 ------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~l~f~s~~----------~g~~~Iy~~ 313 (427)
T PRK02889 263 ------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRSIYFTSDR----------GGAPQIYRM 313 (427)
T ss_pred ------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCEEEEEecC----------CCCcEEEEE
Confidence 23788889888888887764321 2457899999999985332 224478988
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ +++..++++........+.|||||++|+|.+..++. .+|+++++.++ +.+.++.... .. .++|+
T Consensus 314 ~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~-~~I~v~d~~~g--~~~~lt~~~~--~~------~p~~s 379 (427)
T PRK02889 314 PA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGA-FKLYVQDLATG--QVTALTDTTR--DE------SPSFA 379 (427)
T ss_pred EC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccCCc-EEEEEEECCCC--CeEEccCCCC--cc------CceEC
Confidence 85 666777776444444578999999999998765543 57999998875 3344443211 11 16799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||+.|+|.... +....|++++++++..+++....
T Consensus 380 pdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~ 414 (427)
T PRK02889 380 PNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRLSVQG 414 (427)
T ss_pred CCCCEEEEEEec------------------CCCEEEEEEECCCCceEEeecCC
Confidence 999999998742 12346899999766666665443
No 26
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=5.3e-20 Score=209.14 Aligned_cols=254 Identities=16% Similarity=0.142 Sum_probs=182.9
Q ss_pred CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002164 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
+.+|+|+.... ..+....+||++|.+++..++++..... +..++|||||+.|+|+....
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~~-------------- 225 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFER-------------- 225 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecCC--------------
Confidence 46799987532 1223456899999999888999876543 66899999999999882110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 226 --------------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 226 --------------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 2357999999 8888888765 55568899999999999864421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+|+++|++++..++++..... ...+.|||||+.|+|..+. ....+||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 24899999998888887754311 2467899999999996332 22347999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (958)
+++ ++++.++++........+.|||||++|+|....++ ..+|++++++++ +.+.++.... . . . ++|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~~g--~~~~Lt~~~~-~-~----~--p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLSTG--SVRTLTPGSL-D-E----S--PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECCCC--CeEECCCCCC-C-C----C--ceE
Confidence 985 66777777654444557999999999999875433 368999998875 3445543321 1 1 1 679
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
||||++|+|.... .....||+++++++..+++....
T Consensus 387 spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 387 APNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEEcccCC
Confidence 9999999998742 12347999999888777776544
No 27
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.4e-19 Score=206.60 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=182.4
Q ss_pred CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002164 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (958)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (958)
-.++|+|+.... ...++..+||++|.+|+..++++..... +..++|||||+.|+|+....
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~~------------- 220 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFEQ------------- 220 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcCC-------------
Confidence 346899986532 1123456899999999888888765543 56899999999999872110
Q ss_pred CceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002164 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (958)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 356 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+....+
T Consensus 221 ---------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 221 ---------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred ---------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 2357999999 8888888765 55567999999999999875422
Q ss_pred ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEE
Q 002164 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (958)
Q Consensus 357 ~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (958)
..+|+++|++++..++|+.... ....+.|||||+.|+|..+. .+..+||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~-------------~~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPA-------------IDTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCC-------------CcCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 2489999999988888876432 12457899999999996332 2345799
Q ss_pred EEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceE
Q 002164 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (958)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (958)
++++ ++++.++++........+.|||||++|+|....++ ..+||+++++++ +.+.++... .+ .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~-~~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTS-LD-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCC-CC-----CC--ce
Confidence 9985 66777777644444456899999999999876544 367999999885 445554331 11 11 57
Q ss_pred eccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
|||||++|+|.... .....|++++++++..+++...
T Consensus 381 ~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 381 VAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCC
Confidence 99999999998742 1234699999987766666543
No 28
>PRK10566 esterase; Provisional
Probab=99.84 E-value=2.7e-19 Score=188.68 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=146.2
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~ 730 (958)
.+....|.|.+. .+++.|+||++||.+.. ... ....+..|+++||.|++++++ |+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTSS-----------KLV----YSYFAVALAQAGFRVIMPDAP---MHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCcc-----------cch----HHHHHHHHHhCCCEEEEecCC---cccccC
Confidence 455567778641 12358999999996321 011 124567888999999995554 554431
Q ss_pred cc------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc--CCCC---
Q 002164 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (958)
Q Consensus 731 ~~------~~---~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~~~--- 796 (958)
.. .. ......+|+.++++++.+++.+|+++|+++|||+||++++.++.+.|+. ++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV-KCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe-eEEEEeeCcHHHHHHHH
Confidence 11 11 1234567888999999998889999999999999999999999998764 44433322 1110
Q ss_pred -CCCCCCcccc--cchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEe
Q 002164 797 -TLTPFGFQNE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVIL 870 (958)
Q Consensus 797 -~~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~ 870 (958)
...+...... ..........+..+++...+.++ ++|+|++||++|.+|| +.++++++++++..|.+ +++++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 0000000000 00011111223344555556666 6899999999999999 99999999999998864 789999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 871 p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
++++|.+. ...+..+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999975 346789999999875
No 29
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.84 E-value=1.7e-19 Score=179.85 Aligned_cols=233 Identities=14% Similarity=0.149 Sum_probs=171.3
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCC-CcCcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~G~~vl~ 717 (958)
...-.+++.+|.++....|+|.+- ..+..+|+++||... .. ......+..|+..||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~---------------~~s~~~~~~a~~l~~~g~~v~a 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE---------------HSSWRYQSTAKRLAKSGFAVYA 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc---------------cchhhHHHHHHHHHhCCCeEEE
Confidence 344567888999999999999652 235789999999421 11 1223467789999999999
Q ss_pred cCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 718 GPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
+|..|+|.+.+...+ +...++|+...++.++.+..--....+++||||||.+++.++.++|+.+.++|.++|.+
T Consensus 88 ---~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc 164 (313)
T KOG1455|consen 88 ---IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMC 164 (313)
T ss_pred ---eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeeccc
Confidence 777788888764433 56789999999999888755444589999999999999999999999999999999865
Q ss_pred CCCC-------------------CCCCccccc-------chhhh------cH-------------HHHH-hcCcccccCC
Q 002164 795 NRTL-------------------TPFGFQNED-------RTLWE------AT-------------STYV-EMSPFMSANK 828 (958)
Q Consensus 795 ~~~~-------------------~~~~~~~~~-------~~~~~------~~-------------~~~~-~~sp~~~~~~ 828 (958)
-... ..|...... +.++. ++ +.+. ..+...++.+
T Consensus 165 ~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~ 244 (313)
T KOG1455|consen 165 KISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNE 244 (313)
T ss_pred ccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhccc
Confidence 3110 011100000 11110 10 0000 1123456778
Q ss_pred CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHh
Q 002164 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (958)
++.|+||+||++|.++. +..+++||+..... ++++.+|||+-|.+. ..++.+.++..|++||+++
T Consensus 245 vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 245 VTVPFLILHGTDDKVTD--PKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred ccccEEEEecCCCcccC--cHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 89999999999999988 89999999988765 578889999999976 4677889999999999875
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.83 E-value=7.4e-19 Score=193.45 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=167.3
Q ss_pred CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC
Q 002164 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (958)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (958)
.+..++.+...++..||.++++..+.|.+. ..+.|+||++||.... ..+ .....+..|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 444456666778888999999999988641 1247899999995311 011 1123355688899
Q ss_pred cEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
|.|++ +|.+|+|.+.... .......+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 6677888775322 23567789999999999876444456899999999999999999999999999999
Q ss_pred eccCCCCCCC---CCCc-----------cc----ccchhh------hcHHHHHhcCc----------------------c
Q 002164 790 RSGAYNRTLT---PFGF-----------QN----EDRTLW------EATSTYVEMSP----------------------F 823 (958)
Q Consensus 790 ~~~~~~~~~~---~~~~-----------~~----~~~~~~------~~~~~~~~~sp----------------------~ 823 (958)
.++....... .+.. .. ...... .....+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 0000 00 000000 00000001111 2
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC--c-ccHHHHHHHHHHHHHHhhcc
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--R-ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~--~-~~~~~~~~~i~~fl~~~l~~ 900 (958)
..+.++++|+||+||++|..+| ++.+++++++++.. .++++++++++|.+.. + .....+...+.+||.+++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 3356788999999999999999 99999999887643 3688899999999743 2 22356788899999999754
Q ss_pred C
Q 002164 901 N 901 (958)
Q Consensus 901 ~ 901 (958)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 4
No 31
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=5.1e-19 Score=200.64 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=160.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|||++.+ .+ . ..||+|++.+ +..+.++... .
T Consensus 205 ~v~~p~wSPDG~~la~~s~~----------------------~~--~------~~i~i~dl~t----g~~~~l~~~~--g 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE----------------------NK--K------SQLVVHDLRS----GARKVVASFR--G 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec----------------------CC--C------cEEEEEeCCC----CceEEEecCC--C
Confidence 46789999999999998763 10 1 3799999854 5555665443 2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++|||||++|+|+.. .++..+||++++++++.++++..... ...+.|+|||+.|+|++...
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~~~---- 313 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSDRS---- 313 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEECCC----
Confidence 3567999999999999763 34567899999999999999865442 55899999999999872110
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
+..+||.++. ++..+.++... ..+.|||||++|++
T Consensus 314 ------------------------------------------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 314 ------------------------------------------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred ------------------------------------------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 2357999998 66666663323 46789999999999
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
.... .+++||+.++..+.++... . ...+.|+|||+.|++....
T Consensus 350 ~~~~--------------~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~~--------- 392 (429)
T PRK01742 350 INGD--------------NVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSSTQ--------- 392 (429)
T ss_pred EcCC--------------CEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEcC---------
Confidence 8632 6888999887766665321 1 1357899999999986321
Q ss_pred cccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
+....+++++. +|+..++|...++.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 22334666664 78788888777777888999984
No 32
>PRK13604 luxD acyl transferase; Provisional
Probab=99.82 E-value=5.3e-19 Score=182.98 Aligned_cols=208 Identities=12% Similarity=0.043 Sum_probs=145.3
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
...+...||..|.+|+..|++.. ..+.++||++||-... . .....++..|+++||+|+.
T Consensus 11 ~~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~~------------~---~~~~~~A~~La~~G~~vLr--- 69 (307)
T PRK13604 11 DHVICLENGQSIRVWETLPKENS---PKKNNTILIASGFARR------------M---DHFAGLAEYLSSNGFHVIR--- 69 (307)
T ss_pred hheEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCCC------------h---HHHHHHHHHHHHCCCEEEE---
Confidence 33567789999999999997522 2347899999994210 0 1134567889999999999
Q ss_pred CCCCCC-CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 721 TPIIGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 721 ~~~~G~-G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
+|++|. |.|.+.. ........|+.++++|++++. .++|+|+||||||.+++.+|... .++++|+.+|+.+..
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 555554 5553321 112345799999999998863 46899999999999987766644 399999999987722
Q ss_pred C-------C-----CCCcc-c----ccc-----hhhhcHHH---HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 798 L-------T-----PFGFQ-N----EDR-----TLWEATST---YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 798 ~-------~-----~~~~~-~----~~~-----~~~~~~~~---~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
. . ++... . ... .+...... ....+|+..+.+++.|+|++||++|..|| +++++
T Consensus 145 d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~ 222 (307)
T PRK13604 145 DTLERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVI 222 (307)
T ss_pred HHHHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHH
Confidence 0 0 00000 0 000 01111000 11245567788899999999999999999 99999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+++++++. .+++++++||++|.+.
T Consensus 223 ~l~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 223 DLLDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHHHhcc--CCcEEEEeCCCccccC
Confidence 99998764 3689999999999984
No 33
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.81 E-value=8.9e-19 Score=186.76 Aligned_cols=232 Identities=19% Similarity=0.172 Sum_probs=154.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
.......++|++.+|..|.|++++|++. ++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 3456778999999999999999999842 3569999999995311 0111223468999999
Q ss_pred EEEcCCCCCCCCCCc------------------c-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 715 ILGGPTTPIIGEGDE------------------E-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 715 vl~~~~~~~~G~G~~------------------~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
|+.++.+|..|.... . ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 999666655431100 1 112345567899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCC-----CC--CCcccccchh-----------hhcHHHHHhcCcccccCCCCCCEEEEe
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTL-----TP--FGFQNEDRTL-----------WEATSTYVEMSPFMSANKLKKPILLVH 837 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~-----~~--~~~~~~~~~~-----------~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (958)
+|+.+ ++|+++++..|.+.... .. ..+ .+.... -+-.+.+..++..+.+++|++|+|+..
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y-~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~ 269 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPY-PEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSV 269 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTT-HHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccH-HHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEE
Confidence 99999 56999999888643110 00 000 000000 011234556778888999999999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|-.|..|| +.-....|+++.. ++++.+||..+|.... ....++.++||.+|
T Consensus 270 gl~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 270 GLQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp ETT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred ecCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 99999998 9988888888865 5899999999998742 22256678998775
No 34
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.81 E-value=2.5e-18 Score=191.95 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=154.5
Q ss_pred CCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 636 ~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
....+.++|+..+|..+++++++|+. .++.|+||+.||.. +.. .......+..|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988766631 000 001123456789999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
++ +|.+|+|.+.... ..........+++++|.+.+.+|.+||+++|+|+||++++.++...|++++++|+.+|+++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556777663321 1112222335789999999999999999999999999999999999889999999998865
Q ss_pred CCCCCCCcccc------------cchhhhcHHH----HHhcCcc--c-ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 796 RTLTPFGFQNE------------DRTLWEATST----YVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~~----~~~~sp~--~-~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
........... .+......+. +..++.. . ...++++|+|++||++|.++| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 0000001111 1111211 1 125688999999999999999 888887765
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
... ..+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 543 3588899986 433 356788999999999876
No 35
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.80 E-value=4.6e-18 Score=180.84 Aligned_cols=237 Identities=16% Similarity=0.200 Sum_probs=150.1
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH-HHCCcEEE
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAIL 716 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~vl 716 (958)
.+.+++.+. -+..+.+.+|+|+++... ++|+|+++||.+... ..+.. ......+ ++.||.|+
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~Vv 76 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLALV 76 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEEE
Confidence 445555543 567888999999875332 489999999964211 11110 0112344 45799999
Q ss_pred EcCCCCCCCCCCc-------------cc----chhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 717 GGPTTPIIGEGDE-------------EA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 717 ~~~~~~~~G~G~~-------------~~----~~~~--~~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
+++.. .+|.|.+ +. .... .......+.+.+.. +.++..+|+++++|+|+||||++|+.+
T Consensus 77 ~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~ 155 (275)
T TIGR02821 77 APDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVI 155 (275)
T ss_pred EeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHH
Confidence 97762 2232211 00 0000 00112222222333 333344788999999999999999999
Q ss_pred HHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCCh-HHHHH
Q 002164 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSDR 853 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~-~~~~~ 853 (958)
+.++|++|+++++.+|+++.....+........+..+.+.+...+|...+.+ ...|+|+.||+.|..++ . .+...
T Consensus 156 a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~ 233 (275)
T TIGR02821 156 ALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDA 233 (275)
T ss_pred HHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHH
Confidence 9999999999999999877543222110001111112222334455444332 45799999999999998 7 57889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+.++|+..|+++++..+||++|.+.. ....+...++|+.++
T Consensus 234 ~~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 234 FEQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhh
Confidence 99999999999999999999999842 345566777777664
No 36
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.80 E-value=1.7e-18 Score=177.99 Aligned_cols=201 Identities=22% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC--CCCc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G--~G~~ 729 (958)
+.+++..|++- ++.|.||++|+.. ++.......+..|+++||.|+++|.++..+ ....
T Consensus 1 ~~ay~~~P~~~-----~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEGG-----GPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETTS-----SSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCCC-----CCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 46899999762 4589999999842 111222345778999999999999876655 1111
Q ss_pred ccc-hh-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC
Q 002164 730 EAN-DR-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 730 ~~~-~~-------~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (958)
... .. .......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 100 11 1235578899999999999888899999999999999999998887 67999999877100
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR- 880 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~- 880 (958)
...+.....++++|+|+++|++|+.++ .+...++.++|+..+.++++.+|||++|+|...
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 001223345678999999999999998 888899999999999999999999999998643
Q ss_pred ------ccHHHHHHHHHHHHHHhh
Q 002164 881 ------ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 881 ------~~~~~~~~~i~~fl~~~l 898 (958)
....+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 234577888999999886
No 37
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.80 E-value=2e-17 Score=188.81 Aligned_cols=228 Identities=18% Similarity=0.201 Sum_probs=165.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..||+++. +| ...++|+.. +..+..|.|||||++|+|+.. .++..+||++++++|+.++++.....
T Consensus 170 ~~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~-- 235 (417)
T TIGR02800 170 YELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM-- 235 (417)
T ss_pred ceEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 33 556777642 235788999999999999864 23457899999999988777654432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|||+.|+++.... +..+||.+++
T Consensus 236 ---~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d~~ 266 (417)
T TIGR02800 236 ---NGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMDLD 266 (417)
T ss_pred ---ccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEECC
Confidence 44789999999998872100 2356999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..+.++.. .....+.|+|||++|+|.+.+.. ..+|++++++++..++++... ..
T Consensus 267 ~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~ 323 (417)
T TIGR02800 267 GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GY 323 (417)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 7888888766 44567899999999999985432 237999999887777766422 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|++.... .....|+++++ +++..+.++.. .....+.|+|||+.|+|....++.
T Consensus 324 ~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~- 388 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGR- 388 (417)
T ss_pred ccCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCc-
Confidence 3467899999999885321 12447899985 55566656543 345678999999999999886654
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..+++++.++.
T Consensus 389 ~~l~~~~~~g~ 399 (417)
T TIGR02800 389 GVLGLVSTDGR 399 (417)
T ss_pred EEEEEEECCCc
Confidence 67888887763
No 38
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=7.9e-18 Score=186.34 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=159.3
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
++..+.+.+|.++.+..+.|.+ ..+.|+||++||..... . .+....+..|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~~------------~--~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDTC------------T--FFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCcc------------c--hHHHHHHHHHHhCCCEEEE--
Confidence 3445566799999999999864 12468999999953110 0 0012345578889999999
Q ss_pred CCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
.|.+|+|.+.... ..+...+.|+.+.++++..+...+..+++|+||||||.+++.++.++|++++++|+++|....
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 6667888775432 234677888999888887654455668999999999999999999999999999999886431
Q ss_pred CC---CCC----------------Ccc-c-c-cchhhhcH-----------------------HHHHh-cCcccccCCCC
Q 002164 797 TL---TPF----------------GFQ-N-E-DRTLWEAT-----------------------STYVE-MSPFMSANKLK 830 (958)
Q Consensus 797 ~~---~~~----------------~~~-~-~-~~~~~~~~-----------------------~~~~~-~sp~~~~~~~~ 830 (958)
.. .+. ... . . ....+.+. +.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 000 000 0 0 00000000 00000 01123456789
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc---HHHHHHHHHHHHHHhhc
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYCV 899 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~---~~~~~~~i~~fl~~~l~ 899 (958)
+|+||+||++|..+| +..++++++.+... .++++++|+++|.+...+. ...++..|.+||++++.
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999999998 89999998877543 3688899999999753221 34588899999998863
No 39
>PLN02442 S-formylglutathione hydrolase
Probab=99.79 E-value=5.4e-18 Score=180.41 Aligned_cols=239 Identities=21% Similarity=0.229 Sum_probs=149.8
Q ss_pred cEEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
..+.+++.+ .-|..+...+|+|+.. ++ .++|+|+++||+.... ..+... ....+.++..||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-DS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-cC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEEE
Confidence 455566655 3567899999999842 22 3599999999964211 111110 112345567899999
Q ss_pred EcCCCCC--C----------CCCCccc----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 717 GGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 717 ~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.++.... . |+|.+.. . ..+.....+++...++... ..+|+++++|+|+||||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~ 159 (283)
T PLN02442 82 APDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALT 159 (283)
T ss_pred ecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHH
Confidence 9765311 0 1111100 0 0112223444444443322 2368899999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhc---CcccccCCCCCCEEEEeeCCCCCCCCChH-HH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM---SPFMSANKLKKPILLVHGEEDNNSGTLTM-QS 851 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~ 851 (958)
++.++|++|+++++.+|+++.....+........+....+.+.++ +++..+.+.++|+|++||++|..++ .. ++
T Consensus 160 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~s 237 (283)
T PLN02442 160 IYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLLP 237 (283)
T ss_pred HHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--ccccH
Confidence 999999999999999999875422221110011111112233334 4444555678999999999999987 53 57
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.++++++..|.++++.++|+++|.+. ....++.+.+.|..+++
T Consensus 238 ~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 238 ENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999863 23333444445555444
No 40
>PHA02857 monoglyceride lipase; Provisional
Probab=99.79 E-value=1.3e-17 Score=178.79 Aligned_cols=223 Identities=17% Similarity=0.127 Sum_probs=154.9
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+.+.||..+.+.+|.|.. .+.|+|+++||.... .......+..|+++||.|++ .|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 345699999999998842 236899999995321 11223456778889999999 667
Q ss_pred CCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
+|+|.+.... ..+...++|+..+++++.+.. ...+++++|||+||.+|+.++.+.|++++++|+.+|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888775421 234556788888888876652 23589999999999999999999999999999999865421100
Q ss_pred C-----------Ccccc----cchhh--hc---HHHH-------------------Hh-c-CcccccCCCCCCEEEEeeC
Q 002164 801 F-----------GFQNE----DRTLW--EA---TSTY-------------------VE-M-SPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 801 ~-----------~~~~~----~~~~~--~~---~~~~-------------------~~-~-sp~~~~~~~~~P~Lii~G~ 839 (958)
. .+... ....+ .. ...+ .. . .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 00 0000 00 0 1123456789999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHHHh
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQKY 897 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~--~~~~~~~~i~~fl~~~ 897 (958)
+|..+| +..+.++++.++. .+++.++++++|.+.... ...++++.+.+||+.+
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 8999998887644 479999999999986543 3678999999999886
No 41
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.79 E-value=1.3e-17 Score=183.87 Aligned_cols=322 Identities=19% Similarity=0.218 Sum_probs=198.2
Q ss_pred cCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceee
Q 002164 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (958)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w 196 (958)
||||++++|..+. ....|-++...+||+++++ +..++|+.. ......+.|
T Consensus 1 S~d~~~~l~~~~~------------------------~~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY------------------------TKQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE------------------------EEESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc------------------------EEeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999997762 1122334456899999976 666666532 247899999
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-cc------------cccceEEecCCeEEEEEec
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-NA------------IFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-~~------------~~~~~~wspDG~~l~~~~~ 263 (958)
||||++|||+. +.+||+.+..+++.++||..+...+ ++ .-..+-|||||+.|+|...
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 5699999999999999998663221 11 1236779999999999965
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC------C-cccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP------P-AVYT 335 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~------~-~~~~ 335 (958)
+.+....- ..+........+. + ......+.-+ +-.....|+++++ +|+...+.. . ..+.
T Consensus 121 d~~~v~~~-------~~~~~~~~~~~yp-~--~~~~~YPk~G---~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 121 DEREVPEY-------PLPDYSPPDSQYP-E--VESIRYPKAG---DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp E-TTS-EE-------EEEEESSSTESS--E--EEEEE--BTT---S---EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCcCCceE-------EeeccCCccccCC-c--ccccccCCCC---CcCCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 54443100 0000000000000 0 0000000000 0003456999999 776544332 1 4567
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee-cCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG~~l~ 414 (958)
.+.|++|++.|++....+.. ....+.++|..++..+.+... ..+.|.+ ....+.|. +||..++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q--------~~~~l~~~d~~tg~~~~~~~e----~~~~Wv~----~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQ--------NRLDLVLCDASTGETRVVLEE----TSDGWVD----VYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EEEEEETTEEEEEEEEETTS--------TEEEEEEEEECTTTCEEEEEE----ESSSSSS----SSSEEEE-TTTSSEEE
T ss_pred cceecCCCcEEEEEEcccCC--------CEEEEEEEECCCCceeEEEEe----cCCccee----eecccccccCCCCEEE
Confidence 89999999977776644321 123677778876655554421 1122221 12355665 8999988
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCc-eeeecCCceEEEEEeccc-cceEEEEEcCC-CC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRTRTWVISPG-SK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~~l~~~~~~-~~ 491 (958)
+..+ . ++..+||+++. +++..++|+.+++.+.. +.|+++++.|+|.+..++ ...+||+++++ +
T Consensus 252 ~~s~-~---------~G~~hly~~~~---~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~- 317 (353)
T PF00930_consen 252 WISE-R---------DGYRHLYLYDL---DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG- 317 (353)
T ss_dssp EEEE-T---------TSSEEEEEEET---TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-
T ss_pred EEEE-c---------CCCcEEEEEcc---cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-
Confidence 8766 3 34778999995 78888899999998854 789999999999987644 56899999999 5
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++.+.++...... +. ++|||||++++....
T Consensus 318 -~~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 318 -GEPKCLTCEDGDH-YS------ASFSPDGKYYVDTYS 347 (353)
T ss_dssp -TEEEESSTTSSTT-EE------EEE-TTSSEEEEEEE
T ss_pred -CCeEeccCCCCCc-eE------EEECCCCCEEEEEEc
Confidence 4566666544332 22 789999999988764
No 42
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.78 E-value=3e-18 Score=159.81 Aligned_cols=238 Identities=17% Similarity=0.187 Sum_probs=173.1
Q ss_pred CCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH
Q 002164 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (958)
-+.|....++-+++++.+.|.+++++++.+-+. ..|+++++||.... +. + .-......+
T Consensus 44 vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------mG-----h--r~~i~~~fy 102 (300)
T KOG4391|consen 44 VPTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------MG-----H--RLPIARVFY 102 (300)
T ss_pred CCCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------cc-----c--hhhHHHHHH
Confidence 345667778889999999999999999998322 37999999995311 11 1 011112245
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.+.+..|+. ..++|||.+.+... -.....|..++++||..++..|..+++++|.|.||..|+.+|++..+++.|+|
T Consensus 103 ~~l~mnv~i---vsYRGYG~S~Gsps-E~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLI---VSYRGYGKSEGSPS-EEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEE---EEeeccccCCCCcc-ccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 667999999 55568998876432 24567789999999999999999999999999999999999999989999999
Q ss_pred EeccCCCCCC--CCCCcccc--cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 789 ARSGAYNRTL--TPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 789 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
.-.-+.+... .+..+... .-+.|.-... ++-...+.+.+.|.|++.|.+|..|| +-+.+++|+..... .
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~--~ 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR--T 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHhh---hcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh--h
Confidence 9887665411 11111111 1112221112 23333455678999999999999999 99999999988765 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++..||++.|.-+... .-+++.|.+||.+..+.
T Consensus 252 Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred hhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 68899999999865433 34678899999887653
No 43
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.77 E-value=1.1e-16 Score=182.69 Aligned_cols=253 Identities=16% Similarity=0.159 Sum_probs=179.0
Q ss_pred CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002164 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (958)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (958)
..+.+++|+.... .++..+||+++.+++..++++..... +..++|||||+.|+|.....
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~------------ 211 (417)
T TIGR02800 153 AFSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES------------ 211 (417)
T ss_pred CcCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC------------
Confidence 3477899987532 35577899999998888888875542 55889999999999882110
Q ss_pred CCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCc
Q 002164 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (958)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~ 355 (958)
+..+||++++ +|+.+.+... +....+.|||||+.|+|+.....
T Consensus 212 ----------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~- 256 (417)
T TIGR02800 212 ----------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG- 256 (417)
T ss_pred ----------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC-
Confidence 2256999999 8877766654 45567899999999999864321
Q ss_pred cccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeE
Q 002164 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (958)
Q Consensus 356 ~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l 435 (958)
..+|+++++.++..+.++..... ...+.|+|||++|+|..+. .....|
T Consensus 257 ---------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~i 304 (417)
T TIGR02800 257 ---------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQI 304 (417)
T ss_pred ---------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceE
Confidence 23799999998877777654311 2357899999999986332 223479
Q ss_pred EEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCce
Q 002164 436 YTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMM 515 (958)
Q Consensus 436 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (958)
|++++ ++++.++++........+.|||||+.|+|.....+ ..+|+.++++++ ..+.+..... . . .+
T Consensus 305 y~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~-~~~i~~~d~~~~--~~~~l~~~~~-~-----~--~p 370 (417)
T TIGR02800 305 YMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG-GFNIAVMDLDGG--GERVLTDTGL-D-----E--SP 370 (417)
T ss_pred EEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC-ceEEEEEeCCCC--CeEEccCCCC-C-----C--Cc
Confidence 99995 66777777665556678999999999999876553 368999999874 3344432211 1 1 15
Q ss_pred EeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 516 RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 516 ~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
+|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 371 ~~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 7999999999987421 123688888776666666543
No 44
>PRK10749 lysophospholipase L2; Provisional
Probab=99.77 E-value=4.4e-17 Score=178.60 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=157.4
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+..++...+|.++++..+.|.. +.++||++||... ........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE-
Confidence 45567777899999998887632 2468999999421 111122345568899999999
Q ss_pred CCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
.|.+|+|.+... ...+...++|+.++++.+.+. .+..++.++||||||.+++.++.++|++++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666677876432 123567788888888877654 23468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------CC-cc--c----ccchhh-hcHHHHHhc--------------
Q 002164 791 SGAYNRTLT-P---------------------------FG-FQ--N----EDRTLW-EATSTYVEM-------------- 820 (958)
Q Consensus 791 ~~~~~~~~~-~---------------------------~~-~~--~----~~~~~~-~~~~~~~~~-------------- 820 (958)
+|....... + +. .. . ...... ...+.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 00 00 0 000000 000001000
Q ss_pred -------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCccc--HHHHHH
Q 002164 821 -------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVLW 888 (958)
Q Consensus 821 -------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~~--~~~~~~ 888 (958)
.....+.++++|+|++||++|..|+ +..+.++++.++..+ ..+++++||+++|.+..... ...+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456788999999999999999 899999999998765 34689999999999764443 677889
Q ss_pred HHHHHHHHh
Q 002164 889 ETDRWLQKY 897 (958)
Q Consensus 889 ~i~~fl~~~ 897 (958)
.|.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999875
No 45
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=5.1e-17 Score=166.18 Aligned_cols=212 Identities=20% Similarity=0.190 Sum_probs=164.0
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.++++..+ ..+.+++.+|++ .++.|+||++|+-.. ........++.||.+||.|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~G---------------l~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIFG---------------LNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEecccC---------------CchHHHHHHHHHHhCCcEEEech
Confidence 456777756 899999999986 334599999998421 11122356788999999999988
Q ss_pred CCCCCCCCCccc--c---h------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 720 TTPIIGEGDEEA--N---D------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 720 ~~~~~G~G~~~~--~---~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.+...|...... . . ........|+.++++||..++.+++++|+++|+||||.+++.++.+.| .++|++
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 876555332221 0 0 111567899999999999999899999999999999999999999986 699999
Q ss_pred EeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
+..|..-. +......++++|+|+.+|+.|..+| ...-..+.+++...++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 98774210 0111155789999999999999998 888889999999998899999
Q ss_pred EeCCCCccCCCcc----------cHHHHHHHHHHHHHHhhc
Q 002164 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 869 ~~p~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (958)
+|+++.|.|.... .....++++++||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999987442 235678889999998874
No 46
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=163.25 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=161.9
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
..+.+..+++.|..+.+..+.|+.. ..+++++.||.... +. ........+.. ..+.++
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~D-------lg--------q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAAD-------LG--------QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccc-------hH--------HHHHHHHHHhhcccceEE
Confidence 4567778888999999999998742 36999999994211 00 00011222322 489999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
. +|+.|+|.+.+...- ...++|+.++.+||++... .+++|+|+|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCccc-ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 788899988664332 3889999999999999865 6789999999999999999999996 9999999998774
Q ss_pred CCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
.-..+ .....+.|- ..+.-++.+..+++|+||+||++|.+|+ +.++.+++++++.+ ++..+..|+||.
T Consensus 166 ~rv~~--~~~~~~~~~-----d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYCF-----DAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEee-----ccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 32211 111111221 1222367778889999999999999999 99999999999875 788899999998
Q ss_pred CCCcccHHHHHHHHHHHHHHhh
Q 002164 877 YAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 63 334566777777776654
No 47
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.75 E-value=2.7e-16 Score=173.57 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=192.4
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (958)
||||++++|..+....-..+...++|++|+++++.++++..... ...+.|||||+.|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977644333334567899999999999999876222 6689999999999998
Q ss_pred CCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCc-------------------cccc
Q 002164 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (958)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~-------------------~~~~ 336 (958)
...+||+.++ ++..++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 3456999988 78888887642 1245
Q ss_pred cccCCCCcEEEEEeecCCcccc--c------------------cC-C--CCCceeEEEeccCceEEEeccCCccccCccc
Q 002164 337 LDPSPDEKYILISSIHRPYSFI--V------------------PC-G--RFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~--~------------------~~-~--~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~ 393 (958)
+.|||||++|+|...+...... . |. + .-.-+++++++++++...+.....
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~------- 178 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS------- 178 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH-------
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc-------
Confidence 6799999999999865431100 0 00 0 011256667777655443322100
Q ss_pred ccccccCcceeeeecCCCCceEE-EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--ecccc---Cceeee-cC
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRY---GGISWC-DD 466 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~---~~~~~s-pD 466 (958)
..........+.|++|++.+++. .++. ...-.++++++ ..+..+.+.. .+..+ ..+.|. ++
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~---------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRD---------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETT---------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred cCCCccCcccceecCCCcEEEEEEcccC---------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 00111334679999999966654 3321 22334677775 4445544422 22222 245665 89
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+..+++.+..++ ..+||.++.+++ ..+.++........ .+.|+++++.|+|.....
T Consensus 247 ~~~~l~~s~~~G-~~hly~~~~~~~--~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a~~~--------------- 302 (353)
T PF00930_consen 247 GNEFLWISERDG-YRHLYLYDLDGG--KPRQLTSGDWEVTS------ILGWDEDNNRIYFTANGD--------------- 302 (353)
T ss_dssp SSEEEEEEETTS-SEEEEEEETTSS--EEEESS-SSS-EEE------EEEEECTSSEEEEEESSG---------------
T ss_pred CCEEEEEEEcCC-CcEEEEEccccc--ceeccccCceeecc------cceEcCCCCEEEEEecCC---------------
Confidence 999999888554 689999999985 44566655433211 166888988888887431
Q ss_pred CCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCc
Q 002164 547 PEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (958)
Q Consensus 547 ~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (958)
.....+||.++++ +++.++|+...+.. ...+|||||+.++..++++..|+
T Consensus 303 -~p~~r~lY~v~~~~~~~~~~LT~~~~~~------------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 303 -NPGERHLYRVSLDSGGEPKCLTCEDGDH------------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -GTTSBEEEEEETTETTEEEESSTTSSTT------------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred -CCCceEEEEEEeCCCCCeEeccCCCCCc------------eEEEECCCCCEEEEEEcCCCCCC
Confidence 1234689999999 99999999877641 13679999999999999998874
No 48
>PRK10162 acetyl esterase; Provisional
Probab=99.74 E-value=1.9e-16 Score=171.63 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=158.3
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
..+.++++..+| .+.+.+|.|.. . ..|+||++|||.+..+ +.+.+ ...+..|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFILG--------NLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccCC--------Cchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1 2699999999865432 22222 134556776 599999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEE
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (958)
.++|+.... ..++..+.|+.++++|+.++ ..+|++||+|+|+|+||.+|+.++.+. +.+++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988864332 22355788999999999874 347899999999999999999988752 3578999
Q ss_pred EEeccCCCCCCCCCCcccccch-hh--hcHHH----H-----HhcCccccc--CCC---CCCEEEEeeCCCCCCCCChHH
Q 002164 788 IARSGAYNRTLTPFGFQNEDRT-LW--EATST----Y-----VEMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (958)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~-----~~~sp~~~~--~~~---~~P~Lii~G~~D~~v~~~~~~ 850 (958)
++++|+++.............. .+ ...+. | ...+|.... ..+ -.|++|++|+.|.. .++
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 9999987743211000000000 00 00000 1 012232111 223 36999999999987 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhhc
Q 002164 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (958)
++.+.++|+++|+++++.+++|..|+|... +...+.++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997432 3345778889999988864
No 49
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.73 E-value=4.6e-16 Score=184.81 Aligned_cols=193 Identities=20% Similarity=0.215 Sum_probs=145.6
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRR---------------GVAHPSKIAVGGH 766 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~---------------~~~d~~~i~l~G~ 766 (958)
....+|+++||+|+. .+.+|.|.|.+.. .+...+.+|..++|+||..+ ++. ..||+++|.
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 455789999999999 5556666665542 33478899999999999953 344 479999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC--C-------CCccccc---------------------chhhh----
Q 002164 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-------FGFQNED---------------------RTLWE---- 812 (958)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--~-------~~~~~~~---------------------~~~~~---- 812 (958)
||||++++.+|+..|+.++|+|+.+++.++... . .++..+. ...++
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988999999999988764210 0 0110000 00000
Q ss_pred ------------cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 813 ------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 813 ------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|++|+..++++++++.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012234556777889999999999999999998 8999999999999999999987776 7876444
Q ss_pred ccHHHHHHHHHHHHHHhhccCC
Q 002164 881 ESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
....++.+.+.+||++||++..
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCC
Confidence 4556788899999999998654
No 50
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.73 E-value=4.4e-16 Score=172.35 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=158.5
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.....+...++..+++.+|.|.. ..+.|+||++||.... .......+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 34566777788899999998853 1236899999995311 11112456678889999999
Q ss_pred CCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEecc
Q 002164 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSG 792 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~ 792 (958)
+|.+|+|.+.... .......+|+.++++++.... +..+++|+||||||.+++.++. +| ++++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6667788765432 234567889999999997652 2247999999999999997764 44 37999999988
Q ss_pred CCCCCCC---------------C-CCcccc--c-chhhhcHHH----H------------------Hhc-C-cccccCCC
Q 002164 793 AYNRTLT---------------P-FGFQNE--D-RTLWEATST----Y------------------VEM-S-PFMSANKL 829 (958)
Q Consensus 793 ~~~~~~~---------------~-~~~~~~--~-~~~~~~~~~----~------------------~~~-s-p~~~~~~~ 829 (958)
....... + +.+... . .....++.. + .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 6532210 0 000000 0 000000000 0 000 0 12345678
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++|+|++||++|..+| +..++++++.+... .+++.+||+++|.+......+++++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999886543 467888999999986666788999999999999874
No 51
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=4e-16 Score=157.12 Aligned_cols=325 Identities=16% Similarity=0.202 Sum_probs=196.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
+-.++|||||++||..+.+ +++.+||+.+. .+....+++. ..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~KgH~--~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKGHK--NW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecCCc--cE
Confidence 4457788888888876654 68899999551 2334444433 58
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEe-----cCCeEEEEEec
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~ws-----pDG~~l~~~~~ 263 (958)
+..++|||||++||... -.+.|.+||+++|+.. .|..+... +..++|- |+.++|+..+
T Consensus 160 VlcvawsPDgk~iASG~---------~dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep~hl~p~~r~las~s- 224 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS---------KDGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEPLHLVPPCRRLASSS- 224 (480)
T ss_pred EEEEEECCCcchhhccc---------cCCeEEEecCCCCCcccccccCcccc-----eeEEeecccccCCCccceeccc-
Confidence 99999999999999844 4778999999987653 34333332 6778886 5666666441
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccC
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~S 340 (958)
+.+.+.++|+ .| ....++.+ ..++.+.|-
T Consensus 225 ------------------------------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 225 ------------------------------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred ------------------------------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 2234556666 44 44455555 678888886
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCcc-ccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|.-+.|+... +.+|.+|+.. |.-.+.|..+... +.+.. +.....+.=+|.|-|++.--..+
T Consensus 257 --G~gliySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lal---sTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 --GEGLIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLAL---STDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred --CCceEEecCC------------CceEEEEEccchhHHHhhcccchheeeeec---cchhhhhccccccccccCCChHH
Confidence 4446676633 4589999876 3333444332210 00000 00000111223333332110000
Q ss_pred ------------eccCCCcccccccCCeEEEEeCCCCCCC-CceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
..+.+...+..+....+++|+. .... ...+.+.+..-+..+.|||||++|+.++.++. .+||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p--~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--VkLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP--FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS--VKLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecc--cccccchhhhhchhhheeeEEECCCccEEEEeecccc--eeeee
Confidence 0111122233355667999983 4443 33456778888999999999999999987776 66775
Q ss_pred EcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
.+ + ++....+..+...+|. ++||.|.+.|+..+++ ..|.+|++.+++..
T Consensus 396 g~--t--Gk~lasfRGHv~~VYq------vawsaDsRLlVS~SkD---------------------sTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--T--GKFLASFRGHVAAVYQ------VAWSADSRLLVSGSKD---------------------STLKVWDVRTKKLK 444 (480)
T ss_pred CC--C--cchhhhhhhccceeEE------EEeccCccEEEEcCCC---------------------ceEEEEEeeeeeec
Confidence 44 3 3445556667777776 8999999988877643 25999999877654
Q ss_pred EEecCCcccccceeEeecCCCccccccccCCEEE
Q 002164 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (958)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (958)
.=..+... .+.. ++|||||.++.
T Consensus 445 ~DLpGh~D----EVf~-------vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVFA-------VDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEEE-------EEecCCCceee
Confidence 32221111 1222 57899998654
No 52
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.71 E-value=6.8e-16 Score=170.39 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=164.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.++++.|- || ...+.++. ....+..|.|||||+.|+|..-.. .+..++|++++++|+..++......
T Consensus 173 ~~l~~~D~--dg--~~~~~l~~--~~~~~~~p~ws~~~~~~~y~~f~~-----~~~~~i~~~~l~~g~~~~i~~~~g~-- 239 (425)
T COG0823 173 YELALGDY--DG--YNQQKLTD--SGSLILTPAWSPDGKKLAYVSFEL-----GGCPRIYYLDLNTGKRPVILNFNGN-- 239 (425)
T ss_pred ceEEEEcc--CC--cceeEecc--cCcceeccccCcCCCceEEEEEec-----CCCceEEEEeccCCccceeeccCCc--
Confidence 46777654 34 44555543 334688899999999999986422 1227899999999888777665543
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
-..++|||||+.|+|..... +..+||++|+
T Consensus 240 ---~~~P~fspDG~~l~f~~~rd----------------------------------------------g~~~iy~~dl~ 270 (425)
T COG0823 240 ---NGAPAFSPDGSKLAFSSSRD----------------------------------------------GSPDIYLMDLD 270 (425)
T ss_pred ---cCCccCCCCCCEEEEEECCC----------------------------------------------CCccEEEEcCC
Confidence 34899999999999983211 3457999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..++|+.. +....+.|||||++|+|++++.+ .-+|++++.+++..++++......
T Consensus 271 ~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~------------ 328 (425)
T COG0823 271 GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGN------------ 328 (425)
T ss_pred CCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCC------------
Confidence 7777788887 66679999999999999996643 228999999999998888754332
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
..+.|||||++|+|.... + +.-.+...++ .++.. .++.........+.|+++|+.|.|.+...++
T Consensus 329 -~~p~~SpdG~~i~~~~~~--~--------g~~~i~~~~~--~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~- 393 (425)
T COG0823 329 -SNPVWSPDGDKIVFESSS--G--------GQWDIDKNDL--ASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQGGG- 393 (425)
T ss_pred -cCccCCCCCCEEEEEecc--C--------CceeeEEecc--CCCCc-EEEccccccCCCCCcCCCCceEEEeccCCCC-
Confidence 356799999999996311 1 1123555553 23333 3444444556789999999999999876643
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..++.++.++.
T Consensus 394 ~~l~~~s~~g~ 404 (425)
T COG0823 394 SVLSLVSLDGR 404 (425)
T ss_pred ceEEEeeccce
Confidence 67888887763
No 53
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=1.6e-16 Score=154.48 Aligned_cols=231 Identities=17% Similarity=0.152 Sum_probs=160.2
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
.++-.++|++.+|.+|.+|+++|.. .++++|+||..||-....+ .+ .-...|+..||+|+
T Consensus 54 ve~ydvTf~g~~g~rI~gwlvlP~~----~~~~~P~vV~fhGY~g~~g--------~~--------~~~l~wa~~Gyavf 113 (321)
T COG3458 54 VEVYDVTFTGYGGARIKGWLVLPRH----EKGKLPAVVQFHGYGGRGG--------EW--------HDMLHWAVAGYAVF 113 (321)
T ss_pred eEEEEEEEeccCCceEEEEEEeecc----cCCccceEEEEeeccCCCC--------Cc--------cccccccccceeEE
Confidence 4567889999999999999999975 2366999999999432111 11 11336789999999
Q ss_pred EcCCCCCCCCCCc----ccc----------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 717 GGPTTPIIGEGDE----EAN----------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 717 ~~~~~~~~G~G~~----~~~----------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.++.||..+.... ... .-++...+.|+..+++-+...+.+|.+||++.|.|.||.+++.+
T Consensus 114 ~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaa 193 (321)
T COG3458 114 VMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAA 193 (321)
T ss_pred EEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhh
Confidence 9666555443110 000 01123458899999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEEeccCCCCCCCCCCccc-----ccchhh--------hcHHHHHhcCcccccCCCCCCEEEEeeCCCCC
Q 002164 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQN-----EDRTLW--------EATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (958)
++.. ++++++++..|.......-+.... +..++. +-.+.+...+..+.+.++|.|+|+..|..|+.
T Consensus 194 aal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~v 272 (321)
T COG3458 194 AALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPV 272 (321)
T ss_pred hhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCC
Confidence 9999 579999999987542111111100 000110 11133344455667788999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|| |.-....|++|... +++.+||.-+|.-... ...+++..|+..-
T Consensus 273 cp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p~----~~~~~~~~~l~~l 317 (321)
T COG3458 273 CP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGPG----FQSRQQVHFLKIL 317 (321)
T ss_pred CC--ChhhHHHhhcccCC---ceEEEeeccccccCcc----hhHHHHHHHHHhh
Confidence 98 88888888888654 6888899878875321 2234466776553
No 54
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.70 E-value=1.4e-14 Score=149.84 Aligned_cols=169 Identities=11% Similarity=0.073 Sum_probs=118.0
Q ss_pred hcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 312 ATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
..++.++++. .|-.-++...+.+.-..++-|++.++....+. ..+-++|.+|++.+++...-
T Consensus 339 SRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~l----- 401 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKDL----- 401 (668)
T ss_pred ecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCCc-----
Confidence 4567777777 77677776665566666777888777666442 27889999999988765421
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCce
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLA 469 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~ 469 (958)
..+..+..||||+.+++. ..+.+||++|+ ++++++.+.... +-+..+.|+|++++
T Consensus 402 --------g~I~av~vs~dGK~~vva-------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 402 --------GNIEAVKVSPDGKKVVVA-------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred --------cceEEEEEcCCCcEEEEE-------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcCCcee
Confidence 445688999999998884 55678999996 778888885543 45678999999999
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeee
Q 002164 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
|+|+-..+--...|.+.|.+++ +...++.....+ .+ ++|.|||++|+|.+..
T Consensus 458 iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~D-----fs--PaFD~d~ryLYfLs~R 509 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYD-----FS--PAFDPDGRYLYFLSAR 509 (668)
T ss_pred EEEecCcceeeeeEEEEecCCC--eEEEecCCcccc-----cC--cccCCCCcEEEEEecc
Confidence 9998653322244666666663 323333333222 23 5689999999998765
No 55
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.68 E-value=4.9e-15 Score=163.61 Aligned_cols=229 Identities=17% Similarity=0.127 Sum_probs=165.4
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+++|+... ..+....+||+.|-++-..+.++..... +..++|+||++.|+|..-..+
T Consensus 158 ~~i~~v~~~---~~~~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~~~-------------- 215 (425)
T COG0823 158 TRIAYVAES---DGGPLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFELG-------------- 215 (425)
T ss_pred ceEEEEeec---ccCCCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEecC--------------
Confidence 355554321 2344577899999886666777654443 568999999999998821111
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..++|++++ +|+...+... +....+.|||||++|+|...+..
T Consensus 216 -------------------------------~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg---- 260 (425)
T COG0823 216 -------------------------------GCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG---- 260 (425)
T ss_pred -------------------------------CCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----
Confidence 1156999999 7766666654 67788999999999999996642
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+||++|++++..++|+.....+ ..+.|||||++|+|.++. +++.+||++
T Consensus 261 ------~~~iy~~dl~~~~~~~Lt~~~gi~-------------~~Ps~spdG~~ivf~Sdr----------~G~p~I~~~ 311 (425)
T COG0823 261 ------SPDIYLMDLDGKNLPRLTNGFGIN-------------TSPSWSPDGSKIVFTSDR----------GGRPQIYLY 311 (425)
T ss_pred ------CccEEEEcCCCCcceecccCCccc-------------cCccCCCCCCEEEEEeCC----------CCCcceEEE
Confidence 348999999998888888766544 356799999999997443 445689999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
+. +|+..++++........+.|||||++|+|....++. ..+...++.++. ..+.++ ..... . .++|+
T Consensus 312 ~~---~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~~~~-~~~~lt-~~~~~-----e--~ps~~ 378 (425)
T COG0823 312 DL---EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLASGG-KIRILT-STYLN-----E--SPSWA 378 (425)
T ss_pred CC---CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccCCCC-cEEEcc-ccccC-----C--CCCcC
Confidence 95 888888898777766689999999999999843332 667777777652 222222 22111 1 16699
Q ss_pred cCCceEEEEe
Q 002164 519 STGTYVIAKI 528 (958)
Q Consensus 519 pdG~~l~~~~ 528 (958)
++|+.+.|..
T Consensus 379 ~ng~~i~~~s 388 (425)
T COG0823 379 PNGRMIMFSS 388 (425)
T ss_pred CCCceEEEec
Confidence 9999999886
No 56
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.67 E-value=5.7e-15 Score=157.10 Aligned_cols=231 Identities=19% Similarity=0.155 Sum_probs=160.8
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
.+..+.+.||..+....+.++.. +..+||++||.. ++...+...+..|+++||.|++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999987641 237899999952 3444445567789999999999
Q ss_pred CCCCCCCCCcc-cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|.+|+|.+. +. -..+...+.|+.+.++.+.+.. -..+++++||||||.+++.++.+.+..+.++|+.+|.+.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 7888998885 32 2225666777777777776641 235899999999999999999999999999999999866
Q ss_pred CCC---C----------------CCCccc----ccchhh--hcH---HHHHh--------------------cC--cccc
Q 002164 796 RTL---T----------------PFGFQN----EDRTLW--EAT---STYVE--------------------MS--PFMS 825 (958)
Q Consensus 796 ~~~---~----------------~~~~~~----~~~~~~--~~~---~~~~~--------------------~s--p~~~ 825 (958)
... . .+.+.. ....-| .++ +.|.+ .. ....
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~ 223 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRD 223 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhc
Confidence 441 0 011111 000000 011 11110 01 1122
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhhc
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (958)
..++++|+|+++|++|.+|+. .+...++++++... .+++++|||+.|.+....+. ..+++.+.+||..++.
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred cccccCCEEEEecCCCccccC-cHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 455689999999999999861 25556666665443 26999999999998877777 8899999999998763
No 57
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.67 E-value=4.9e-14 Score=148.23 Aligned_cols=326 Identities=13% Similarity=0.142 Sum_probs=167.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.-....|.+||++|+|.++ .++..+||++|+++++.+|||..+... .-...++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5567899999999999775 568999999999999999999977532 22567889999988761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~SpDGk 344 (958)
...+|+.+++ +++.+.|..- ..+.......|+.
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1236999999 8877766543 2223333456888
Q ss_pred EEEEEeecCCcccccc---------CCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 345 YILISSIHRPYSFIVP---------CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~---------~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.++.....+......+ ..+-...|..+|+.+++.+.+.... ....-+.|||.-..++.
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-------------~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-------------DWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-------------S-EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-------------ccccCcccCCCCCCEEE
Confidence 8877664432111111 2233457888999998888776532 23356789987666665
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCceEEEEEecc-ccceEEEEEcCCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSKD 492 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~~~~~~~ 492 (958)
.....+.. .-..+||+++. +|+..+.+.... ..+.--.|+|||+.|+|..... +...-|..++++++
T Consensus 205 fCHEGpw~------~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 205 FCHEGPWD------LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp EEE-S-TT------TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred EeccCCcc------eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 55443221 11237999995 777777773322 2234468999999999976533 32345777888875
Q ss_pred CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
+...+...+... ++.-|+||+.++=-.. |.+.. ....+...-.+.+.||+++++.+..+.|.....
T Consensus 275 -~~~~~~~~p~~~--------H~~ss~Dg~L~vGDG~--d~p~~---v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 275 -ERRRLMEMPWCS--------HFMSSPDGKLFVGDGG--DAPVD---VADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp --EEEEEEE-SEE--------EEEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE---
T ss_pred -CceEEEeCCcee--------eeEEcCCCCEEEecCC--CCCcc---ccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 333333332211 2556899986553321 11110 000000111245789999999988887776542
Q ss_pred ccccceeEeecC-----CCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 573 EKYYETTVALMS-----DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
. ..++. ....++|||||++++|+..- ..++.||.++++.
T Consensus 341 s------w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 341 S------WKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIPD 384 (386)
T ss_dssp ----------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--C
T ss_pred c------ceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCcc
Confidence 1 11111 23458999999999998775 4567899988754
No 58
>PRK11460 putative hydrolase; Provisional
Probab=99.66 E-value=6.5e-15 Score=151.83 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHH
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (958)
.....+.+.++++.++..+++++|+++|+|+||.+++.++.+.|+.++++++.++.+.. . +
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~----------~--- 142 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------L----------P--- 142 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------c----------c---
Confidence 33455667777777777788899999999999999999999998888888877763210 0 0
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.....++|+|++||++|.+|| ++.+.+++++|+..|.++++..||+++|.+. .+..+.+.+||.++
T Consensus 143 -------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~ 208 (232)
T PRK11460 143 -------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYT 208 (232)
T ss_pred -------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHH
Confidence 001236899999999999999 9999999999999999999999999999985 34567788888887
Q ss_pred hcc
Q 002164 898 CVS 900 (958)
Q Consensus 898 l~~ 900 (958)
+..
T Consensus 209 l~~ 211 (232)
T PRK11460 209 VPK 211 (232)
T ss_pred cch
Confidence 743
No 59
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=142.95 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=141.4
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc--cchhhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~--~~~~~~~~~~~D~~~av~ 748 (958)
-.||++||.. |++... ....+.|.++||.|.+|.+ +|+|... .-..-.....+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 6788899942 222222 2456678889999999666 4666432 122334577899999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccc-----------ccchhhhcHHHH
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (958)
+|.+.++ +.|++.|.||||.+|+.+|.+.| .+++|..++..+......-+.. +........+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998876 58999999999999999999996 7888887776542211100000 000000001111
Q ss_pred Hhc----------------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 818 VEM----------------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 818 ~~~----------------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
..+ .....+++|..|+||+.|.+|+.|| .+.+.-+|+.+.. .+.++.+|++.||.++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVES--DDKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccC--CcceeEEEccCCceeecch
Confidence 111 2235677889999999999999999 8888888888765 4789999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 002164 882 SIMHVLWETDRWLQ 895 (958)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (958)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999999986
No 60
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.65 E-value=3.7e-15 Score=174.24 Aligned_cols=233 Identities=20% Similarity=0.255 Sum_probs=151.7
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.||.+|.+.+|+|++ .++.|+||++||....... ...........|+++||+|+. .+.
T Consensus 1 i~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~ 61 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDT 61 (550)
T ss_pred CcCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eec
Confidence 357899999999999975 2358999999985311000 000111234578999999999 555
Q ss_pred CCCCCcccchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---
Q 002164 724 IGEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--- 799 (958)
Q Consensus 724 ~G~G~~~~~~~~~-~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--- 799 (958)
+|+|.+.+..... ....+|+.++++|+.++++.+ .+|+++|+||||.+++.+|...|+.++|+|+.++..+....
T Consensus 62 RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~ 140 (550)
T TIGR00976 62 RGRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAF 140 (550)
T ss_pred cccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhcc
Confidence 6777665533223 578999999999999998876 69999999999999999999998999999998887653211
Q ss_pred CCCccc-------------ccc--------------hhhh---cH-------------------------------HHHH
Q 002164 800 PFGFQN-------------EDR--------------TLWE---AT-------------------------------STYV 818 (958)
Q Consensus 800 ~~~~~~-------------~~~--------------~~~~---~~-------------------------------~~~~ 818 (958)
.-.+.. ... .... .. +.+.
T Consensus 141 ~g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 220 (550)
T TIGR00976 141 PGALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWV 220 (550)
T ss_pred CCeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhc
Confidence 000000 000 0000 00 0001
Q ss_pred hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--------ccHHHHHH--
Q 002164 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--------ESIMHVLW-- 888 (958)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--------~~~~~~~~-- 888 (958)
..+....++++++|+|++.|-.|.. ...+.+.|++++..+ +.++++=|. .|..... ........
T Consensus 221 ~~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~ 294 (550)
T TIGR00976 221 SISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEA 294 (550)
T ss_pred cCchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhh
Confidence 1122335567899999999999943 456777888887654 567765554 6752100 00011112
Q ss_pred HHHHHHHHhhccCC
Q 002164 889 ETDRWLQKYCVSNT 902 (958)
Q Consensus 889 ~i~~fl~~~l~~~~ 902 (958)
.+++||++||++..
T Consensus 295 ~~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 295 EQLAFFDRHLKGGT 308 (550)
T ss_pred hhHHHHHHHhCCCC
Confidence 46899999998654
No 61
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.64 E-value=8.2e-16 Score=160.58 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=117.8
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCccc---CCCCCCCCcCcHHHHHHHH
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR---GSPNEFPRIGSTSVLLWLA 710 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~ 710 (958)
...+..|.+.|...++..+++++++|++. ++|.|+||++||.........+... .....+..........||+
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 44567889999999999999999999874 4679999999995322111111100 0011122222345778999
Q ss_pred CCcEEEEcCCCCCCCCCCccc----------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 002164 711 RGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY 768 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~ 768 (958)
+||+|+++|.. |+|+... ...+......|.+.++|||..++.||++||+++|+||
T Consensus 159 ~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 99999995544 4443311 0111233467788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEEeccCCCCC-----CCC------CCccc----ccchhh---hcHHHHHhcCcccccCCCC
Q 002164 769 GAFMTANLLAHAPHLFCCGIARSGAYNRT-----LTP------FGFQN----EDRTLW---EATSTYVEMSPFMSANKLK 830 (958)
Q Consensus 769 GG~~a~~~a~~~p~~~~a~v~~~~~~~~~-----~~~------~~~~~----~~~~~~---~~~~~~~~~sp~~~~~~~~ 830 (958)
||+.++++++.+ ++++++|..+-++... ++. .++.+ ....+| +.++...-. ..
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasli--------AP 306 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLI--------AP 306 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTT--------TT
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHh--------CC
Confidence 999999999999 7898888776543210 000 00000 001111 112211111 24
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.|+|++.|..|..+| . .++-|+.. .++.+.++..||+
T Consensus 307 RPll~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 307 RPLLFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp S-EEESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred CcchhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 799999999998865 3 33444433 3345688888885
No 62
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.63 E-value=2.2e-14 Score=151.71 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=160.2
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~ 717 (958)
...+++. ....+..++|+|....+.. ..|+|||+|||.|..+.... ..+..+...++ +.+.+|+.
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~vvvS 128 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCVVVS 128 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeEEEe
Confidence 3444444 4566888999998755422 38999999999876543222 22334555664 47999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEE
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (958)
++| +.++++.++..++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.
T Consensus 129 VdY--------RLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ 200 (336)
T KOG1515|consen 129 VDY--------RLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQ 200 (336)
T ss_pred cCc--------ccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEE
Confidence 888 4467778899999999999999986 468999999999999999999988753 3578999
Q ss_pred EEeccCCCCCCCC-------CCcccc-----cchhhhc--HHHH-H----hcCcccc-----c-CCCCCCEEEEeeCCCC
Q 002164 788 IARSGAYNRTLTP-------FGFQNE-----DRTLWEA--TSTY-V----EMSPFMS-----A-NKLKKPILLVHGEEDN 842 (958)
Q Consensus 788 v~~~~~~~~~~~~-------~~~~~~-----~~~~~~~--~~~~-~----~~sp~~~-----~-~~~~~P~Lii~G~~D~ 842 (958)
|++.|++...... ...... ....|.. ++.. . ..+|..+ . ...-.|+||+.++.|.
T Consensus 201 ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~ 280 (336)
T KOG1515|consen 201 ILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDV 280 (336)
T ss_pred EEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchh
Confidence 9999986532210 000000 0111210 0000 0 1123321 1 1122579999999997
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHh
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKY 897 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~ 897 (958)
. .+++..+.++|++.|++++++.++++.|.+.. .+........+.+|+.+.
T Consensus 281 L----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 281 L----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred h----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 6 68899999999999999999999999998632 134566777788888754
No 63
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.63 E-value=9.8e-15 Score=155.17 Aligned_cols=213 Identities=24% Similarity=0.310 Sum_probs=137.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
||++|.+.+|+| +.. ..+++|+||..|+....... ..... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~--~~~~~P~il~~tpY~~~~~~-~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD--GGGPFPVILTRTPYGKGDQT-ASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---T--TSSSEEEEEEEESSTCTC-H-HHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCC--CCCcccEEEEccCcCCCCCc-ccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 322 24569999999884210000 00000 0000000011239999999999 5556777
Q ss_pred Ccccchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---CCc
Q 002164 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGF 803 (958)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~ 803 (958)
.|.+.... ...+.+|..++|+|+.++++.| .||+++|.||+|+.++.+|+..|+.++|++...+..|..... -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77765544 7889999999999999998876 699999999999999999998888999999998877754310 000
Q ss_pred ccc-cchhh---------------------h-------------------------------cHHHHHhcCcccccCCCC
Q 002164 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (958)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~~~ 830 (958)
... ....| . ....+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00001 0 001222334444568899
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~ 876 (958)
+|+|++.|..|..+ ...+.+.|++|+..+ .+.+|++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478999999999998 7889988886 775
No 64
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.62 E-value=5.7e-15 Score=150.78 Aligned_cols=189 Identities=16% Similarity=0.109 Sum_probs=117.8
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc--c
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~--~ 731 (958)
+++|+|+++. +++|+||++||++..... +.. ...+...+.+.||+|+++++++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~~~-----------~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTASA-----------YVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCHHH-----------Hhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 3689998742 348999999997532211 100 001233444589999997776543221111 0
Q ss_pred -c--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-Cccccc
Q 002164 732 -N--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-GFQNED 807 (958)
Q Consensus 732 -~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~~~~~~ 807 (958)
. .........|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++......... ......
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011224577888999999998889999999999999999999999999999999998887532111000 000000
Q ss_pred chhhhcHHHHHhc-Cc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 808 RTLWEATSTYVEM-SP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 808 ~~~~~~~~~~~~~-sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
..-.....+.+. .. .....+...|++|+||++|.+|| +..+++++++|+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 -CTAATAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred -CCCCCHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 000001111110 00 11122234567899999999999 99999999999875
No 65
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.62 E-value=3e-13 Score=142.40 Aligned_cols=313 Identities=16% Similarity=0.137 Sum_probs=159.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
......|.+||++|+|.+.. ++ . .++|+.++.+ ++.+|||..+ +.
T Consensus 37 YF~~~~ft~dG~kllF~s~~----------------------dg--~------~nly~lDL~t----~~i~QLTdg~-g~ 81 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDF----------------------DG--N------RNLYLLDLAT----GEITQLTDGP-GD 81 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-T----------------------TS--S-------EEEEEETTT-----EEEE---SS--B
T ss_pred eecCCCcCCCCCEEEEEecc----------------------CC--C------cceEEEEccc----CEEEECccCC-CC
Confidence 34567899999999998863 11 1 3899999977 8889998643 22
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe--cCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDG~~l~~~~~~~~~ 267 (958)
......+||+++.|+|.++ ..+|+.+|+++++.+.+...+... .....|+ .|++.++........
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d 148 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISRED 148 (386)
T ss_dssp -TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG
T ss_pred CccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehh
Confidence 4556889999999999763 458999999999999998888753 3356676 567776654111000
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCC-CCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DGk 344 (958)
+..+-....-...+.......|+.+++ +|+.+.+... .....+.+|| |..
T Consensus 149 ---------------------------~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 149 ---------------------------WKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp --------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred ---------------------------ccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 000000011111222224577999999 9988888765 6667888999 677
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.|.|--.. | ....+..||+++.+|+..+.+...... ....---|+|||+.|.|......
T Consensus 202 li~fCHEG-p------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-----------e~~gHEfw~~DG~~i~y~~~~~~--- 260 (386)
T PF14583_consen 202 LIMFCHEG-P------WDLVDQRIWTINTDGSNVKKVHRRMEG-----------ESVGHEFWVPDGSTIWYDSYTPG--- 260 (386)
T ss_dssp EEEEEE-S--------TTTSS-SEEEEETTS---EESS---TT-----------EEEEEEEE-TTSS-EEEEEEETT---
T ss_pred EEEEeccC-C------cceeceEEEEEEcCCCcceeeecCCCC-----------cccccccccCCCCEEEEEeecCC---
Confidence 78886532 2 122345899999999888887654311 12234569999999999643221
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc------------cceEEEEEcCCCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKD 492 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~~~l~~~~~~~~~ 492 (958)
+...-|+.++. .+++.+.+...++ ..-+--|+||+.++=-..... +..-||++++..+
T Consensus 261 -----~~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~- 330 (386)
T PF14583_consen 261 -----GQDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG- 330 (386)
T ss_dssp -----T--EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-
T ss_pred -----CCceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-
Confidence 11223555664 4455555544433 334555788876543221110 1135777877764
Q ss_pred CCcEEEeccCCccc--cC--CCCCCceEeccCCceEEEEee
Q 002164 493 VAPRILFDRSSEDV--YS--DPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 493 ~~~~~~~~~~~~~~--~~--~~~~~~~~~spdG~~l~~~~~ 529 (958)
....+........ .. ....|.++|||||++|+|.+.
T Consensus 331 -~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 -RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred -ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 2233322211111 11 113577999999999999984
No 66
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.61 E-value=3.9e-14 Score=154.26 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=151.4
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
....+..+.+.+|.|.. ....+.|+|||+|||.|..+. ...+ .......++..|+.|+.++|+-
T Consensus 57 ~~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g~--------~~~~---~~~~~~~~~~~g~~vv~vdYrl-- 120 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLGS--------LRTH---DALVARLAAAAGAVVVSVDYRL-- 120 (312)
T ss_pred cCCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeecC--------hhhh---HHHHHHHHHHcCCEEEecCCCC--
Confidence 33455567789999921 123358999999998754332 1111 1233445667999999988853
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEeccCCCCC
Q 002164 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRT 797 (958)
Q Consensus 725 G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~ 797 (958)
.++..++..+.|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.+.++|..+..
T Consensus 121 ------aPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~ 194 (312)
T COG0657 121 ------APEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 (312)
T ss_pred ------CCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCc
Confidence 334456788999999999999873 4899999999999999999998886532 478888999987765
Q ss_pred CCCCCccc-ccchhhh-------cHHHH---------HhcCccccc--CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 798 LTPFGFQN-EDRTLWE-------ATSTY---------VEMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 798 ~~~~~~~~-~~~~~~~-------~~~~~---------~~~sp~~~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
...-.+.. ....... -...| ...+|+... .. -.|++|++|+.|.. ..++..+.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L 269 (312)
T COG0657 195 SSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERL 269 (312)
T ss_pred ccccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHH
Confidence 41000000 0000000 00000 123444322 22 47899999999987 45899999999
Q ss_pred HhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002164 859 KGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (958)
+..|+++++..+++..|.|. ........+..+.+|+..
T Consensus 270 ~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 270 RAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999883 222334445667777663
No 67
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.60 E-value=1.7e-14 Score=154.05 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=137.1
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH-HHHHHHCC
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS-VLLWLARG 712 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~G 712 (958)
+.....+++.|+-. |..|.+++.+|++ .+|+|+||++-|-. .+..-.... ...|+.+|
T Consensus 160 l~~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGlD---------------s~qeD~~~l~~~~l~~rG 218 (411)
T PF06500_consen 160 LSDYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGLD---------------SLQEDLYRLFRDYLAPRG 218 (411)
T ss_dssp HSSSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--TT---------------S-GGGGHHHHHCCCHHCT
T ss_pred hCCCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCcc---------------hhHHHHHHHHHHHHHhCC
Confidence 34456788889874 5899999999984 34699999876631 121111112 23478899
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
+++++ .+.+|.|.+.... .-++.-.-..++++||...+++|.+||+++|.|+||+.|..+|...+++++|+|+.++
T Consensus 219 iA~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga 294 (411)
T PF06500_consen 219 IAMLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGA 294 (411)
T ss_dssp -EEEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES-
T ss_pred CEEEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCc
Confidence 99999 6666777653211 1111112245889999999999999999999999999999999887789999999998
Q ss_pred CCCCCCCCCCccccc------------chh---hhc-HHHHHhcCccc--cc--CCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 793 AYNRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 793 ~~~~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
+++..++........ +.. ++. ......+|... .+ .+.++|+|.+.|++|.++| .+...
T Consensus 295 ~vh~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~ 372 (411)
T PF06500_consen 295 PVHHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSR 372 (411)
T ss_dssp --SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHH
T ss_pred hHhhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHH
Confidence 755333211100000 000 000 12234455543 23 6678899999999999988 76654
Q ss_pred HHHHHHHhCCCcEEEEEeCCCC-ccCCCcccHHHHHHHHHHHHHHhh
Q 002164 853 RFFNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
-++. .+.+-+...+|... |. .....+..+.+||+..|
T Consensus 373 lia~----~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 373 LIAE----SSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp HHHH----TBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHh----cCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 4432 34445666666433 32 34567888999998875
No 68
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.60 E-value=9.2e-14 Score=147.76 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=144.2
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.+.++. +|..+.++++.|.+- + .+.||++|||+... .++ +. .....+..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~~-------~g~---~~-~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS---H---TTGVLIVVGGPQYR-------VGS---HR-QFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC---C---CCeEEEEeCCcccc-------CCc---hh-HHHHHHHHHHHCCCEEEE--
Confidence 4566765 678899999999641 1 34566667653110 000 00 012346778899999999
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC
Q 002164 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
+|.+|+|.+............|+.++++++.++.. .-++|+++|||+||.+++.++... ++++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 66678887754433446678999999999987621 225799999999999999887664 679999999986432110
Q ss_pred CCC--c----c--cccchhhhc-----------HHHHHh----cCc--------------ccccCCCCCCEEEEeeCCCC
Q 002164 800 PFG--F----Q--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (958)
Q Consensus 800 ~~~--~----~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (958)
... . . ......|.. ...+.. ..+ ...+.++++|+|+++|..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 0 0 000011110 011111 101 11234668999999999997
Q ss_pred CCCCChHH-----HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..+ ... +.++.+.+.. ..++++.+|+++|.++....+..+.+.|.+||++
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 643 111 0222222322 3578999999999887777778899999999863
No 69
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.59 E-value=5.8e-14 Score=153.28 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=148.7
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccC-------------CCCCCCCcCcHHHHHHHH
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (958)
+.+.||..|....|.|+. +..+|+++||-..-+.. .+++. .+++|..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 567799999999998852 35799999993211110 00000 011221122356788999
Q ss_pred CCcEEEEcCCCCCCCCCCcccc---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 002164 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~av~~l~~~------------------~~~d~~~i~l~G~ 766 (958)
+||.|++ .|.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 667788876532 1 23567788888888887652 1111347999999
Q ss_pred ChHHHHHHHHHHhCCC--------ceeEEEEeccCCCCCCC-----------------------C-CCcccccchhh---
Q 002164 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--- 811 (958)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~-----------------------~-~~~~~~~~~~~--- 811 (958)
||||.+++.++.+.+. .++++|+.+|.+..... + +.........+
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999988865432 58889888876421100 0 00000000000
Q ss_pred ------hcH------------HHHHhc--CcccccCCC--CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 812 ------EAT------------STYVEM--SPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 812 ------~~~------------~~~~~~--sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
.++ ..+... .....+.++ ++|+|++||++|..++ +..+.++++++... .+++++
T Consensus 230 ~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~~ 305 (332)
T TIGR01607 230 VNDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELHT 305 (332)
T ss_pred hhhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEEE
Confidence 000 000000 001123444 6899999999999998 88888888776543 468889
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 870 LPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 870 ~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
||+++|.+.......++++.+.+||+
T Consensus 306 ~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 306 LEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 99999999766667889999999985
No 70
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=141.62 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=125.2
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTP 722 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~ 722 (958)
....|.+|...+|.|+++.+.+++ +|+||++||+.....+....+..+. -+..|+. -++-|++|.+-.
T Consensus 167 d~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~---------gaiawa~pedqcfVlAPQy~~ 236 (387)
T COG4099 167 DESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGI---------GAIAWAGPEDQCFVLAPQYNP 236 (387)
T ss_pred ccccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCc---------cceeeecccCceEEEcccccc
Confidence 344688999999999999988762 4999999997654333222222110 0112222 345566644321
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC
Q 002164 723 IIGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (958)
..-- ++. +. ........+.++ -|.+++.||.+||.++|.|+||++++.++.+.|+.|+|++.++|--+.
T Consensus 237 if~d--~e~--~t-~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 237 IFAD--SEE--KT-LLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred cccc--ccc--cc-chhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 1100 100 11 112222233343 667788999999999999999999999999999999999999985331
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p 871 (958)
...++.+ +.|+.++|+.+|..+| .++++-+++.|+..+.++.+..|.
T Consensus 307 ---------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ---------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ---------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhh
Confidence 0111222 5799999999999999 899999999999998888877665
No 71
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=5.3e-14 Score=144.13 Aligned_cols=274 Identities=14% Similarity=0.092 Sum_probs=188.1
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCch---------hcccccceeeceeecCCC--CCccceeeEeceeEEEccC
Q 002164 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKC--NTRSRMSFYTGIGIHQLFP 172 (958)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~ 172 (958)
++-+..++...+||+||+.||..+..+...++ .+.++..+++.+++-|.. ......+.++.+.+|+++.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 44566778899999999999998876444433 555677888889998884 2455666678899999854
Q ss_pred CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe
Q 002164 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 173 dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (958)
+ .....|+++. ..+..++|.|+|++|+..+- ...-.+||+.++....+-.+.... +.+++|.
T Consensus 251 e---~~l~~l~gH~--~RVs~VafHPsG~~L~Tasf---------D~tWRlWD~~tk~ElL~QEGHs~~----v~~iaf~ 312 (459)
T KOG0272|consen 251 E---TPLQDLEGHL--ARVSRVAFHPSGKFLGTASF---------DSTWRLWDLETKSELLLQEGHSKG----VFSIAFQ 312 (459)
T ss_pred C---cchhhhhcch--hhheeeeecCCCceeeeccc---------ccchhhcccccchhhHhhcccccc----cceeEec
Confidence 2 1233455433 58999999999999998652 334446677787766554444433 7799999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP- 330 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~- 330 (958)
|||..++...-+ ....|| |+ +|....+..
T Consensus 313 ~DGSL~~tGGlD-----------------------------------------------~~~RvW--DlRtgr~im~L~g 343 (459)
T KOG0272|consen 313 PDGSLAATGGLD-----------------------------------------------SLGRVW--DLRTGRCIMFLAG 343 (459)
T ss_pred CCCceeeccCcc-----------------------------------------------chhhee--ecccCcEEEEecc
Confidence 999988754111 223344 55 665444333
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
. ..+.+++|||+|-.|+..+.+ +.+.|||+..... +...|... .-+..+.|+|+
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH~----------nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAHS----------NLVSQVKYSPQ 398 (459)
T ss_pred cccceeeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceeccccc----------chhhheEeccc
Confidence 3 778899999999999988744 4889999985433 33333221 33467889996
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+...+++ .+.++.+-+|.. .+....+.|..++..+.++..|+||+.|+..+.+.+ .+||.
T Consensus 399 ~g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT--IKLWR 458 (459)
T ss_pred CCeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCce--eeecc
Confidence 5544443 134555666663 355566778888999999999999999998877665 66773
No 72
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.55 E-value=1.9e-14 Score=147.45 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=122.5
Q ss_pred EEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
||++|||.|..+... .....+..+++ +|++|+.++|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~------------~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE------------SHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTT------------THHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChH------------HHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 789999976543321 11345666775 999999988853 233456799999999999999
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEeccCCCC-CCCCCCcc----ccc---------chh
Q 002164 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGAYNR-TLTPFGFQ----NED---------RTL 810 (958)
Q Consensus 752 ~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~~~~-~~~~~~~~----~~~---------~~~ 810 (958)
++ ..+|+++|+|+|+|.||.+++.++.+.. ..++++++++|.++. ......+. ... ...
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 97 3478999999999999999999998532 248999999998776 21111000 000 000
Q ss_pred hhcH-----HHHHhcCcccccCCC--CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 811 WEAT-----STYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 811 ~~~~-----~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
+... ......+|+.. ..+ -.|++|++|+.|.. ..++.+++++|++.|+++++++++++.|.+
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1100 00112355544 123 25999999999975 578899999999999999999999999986
No 73
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.55 E-value=9.9e-14 Score=132.77 Aligned_cols=145 Identities=22% Similarity=0.225 Sum_probs=106.0
Q ss_pred EEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
+||++||+... .. .....++.|+++||.|+.+ +.++.+.+. ...++.++++++.
T Consensus 1 ~vv~~HG~~~~-----------~~----~~~~~~~~l~~~G~~v~~~---~~~~~~~~~--------~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS-----------RR----DYQPLAEALAEQGYAVVAF---DYPGHGDSD--------GADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT-----------TH----HHHHHHHHHHHTTEEEEEE---SCTTSTTSH--------HSHHHHHHHHHHH
T ss_pred CEEEECCCCCC-----------HH----HHHHHHHHHHHCCCEEEEE---ecCCCCccc--------hhHHHHHHHHHHH
Confidence 58899996321 11 1235677899999999994 445655541 1124555555554
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCC
Q 002164 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK 831 (958)
Q Consensus 752 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 831 (958)
+... |+++|+++|||+||.+++.++.+. +.++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 4322 889999999999999999999998 78999999988200 112335578
Q ss_pred CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
|+|+++|++|..++ +++.++++++++ .+.++.++++++|+
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999999887 46899999999995
No 74
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.55 E-value=8e-14 Score=129.34 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=139.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
+..+.++..-|. +.+ .|.|.. ....|+.|++|..|...+.. ........+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G~-le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm----------~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAGR-LEG-RYEPAK-----TPAAPIALICHPHPLFGGTM----------NNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCccc-cee-ccCCCC-----CCCCceEEecCCCccccCcc----------CCHHHHHHHHHHHhCCceEEe-
Confidence 345556554442 443 344443 22479999999987443322 222234556678899999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
++++|-|++.+.-+.+-.+.+|+.++++|++++.. +..-..+.|+|+|+++++.+|.+.|+ ....|+..|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 66677787877666667889999999999999743 22235789999999999999999965 6666777666541
Q ss_pred CCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+. + ..+.-...|.|+++|+.|.+|+ .....++.+ +.+.+++..++++|.|.
T Consensus 140 ~d----------------f------s~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 YD----------------F------SFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred hh----------------h------hhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 00 1 1122346899999999999987 555555443 35678899999999984
Q ss_pred CcccHHHHHHHHHHHHH
Q 002164 879 ARESIMHVLWETDRWLQ 895 (958)
Q Consensus 879 ~~~~~~~~~~~i~~fl~ 895 (958)
.....+.+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 344667778888884
No 75
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.7e-13 Score=136.98 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.+|+-+.++. .-+.|+++. .
T Consensus 159 WVlcvawsPDgk~iASG~~d---------------------------------g~I~lwdpktg~~--~g~~l~gH~--K 201 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKD---------------------------------GSIRLWDPKTGQQ--IGRALRGHK--K 201 (480)
T ss_pred EEEEEEECCCcchhhccccC---------------------------------CeEEEecCCCCCc--ccccccCcc--c
Confidence 34568999999999988775 5899999876442 234565543 4
Q ss_pred cccceeec-----CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wS-----PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+...+|- |.++++|-.+ ..+.+.+||+..|............ +.-+.|--+| +|+..+.+
T Consensus 202 ~It~Lawep~hl~p~~r~las~s---------kDg~vrIWd~~~~~~~~~lsgHT~~----VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSS---------KDGSVRIWDTKLGTCVRTLSGHTAS----VTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ceeEEeecccccCCCccceeccc---------CCCCEEEEEccCceEEEEeccCccc----eEEEEEcCCc-eEEecCCC
Confidence 78888885 5777777643 3668889999888877665544432 6778897665 45544222
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-------CCe-------eeecCC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-------DGT-------VKEIGP 330 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-------~g~-------~~~l~~ 330 (958)
... +++....+...... +.. ..-|-.+++ +|. ....++
T Consensus 268 rtI------------kvw~a~dG~~~r~l------kGH----------ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 268 RTI------------KVWRALDGKLCREL------KGH----------AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred ceE------------EEEEccchhHHHhh------ccc----------chheeeeeccchhhhhccccccccccCCChHH
Confidence 111 12222111110000 000 000111111 110 000000
Q ss_pred C-----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCccccCcccccccccCcce
Q 002164 331 P-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 331 ~-----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
. ..+ ....-..|++++-.++ +.++++|+.... ...+++.+ ..-+..
T Consensus 320 ~~~~Al~rY-~~~~~~~~erlVSgsD-------------d~tlflW~p~~~kkpi~rmtgH-------------q~lVn~ 372 (480)
T KOG0271|consen 320 EQKKALERY-EAVLKDSGERLVSGSD-------------DFTLFLWNPFKSKKPITRMTGH-------------QALVNH 372 (480)
T ss_pred HHHHHHHHH-HHhhccCcceeEEecC-------------CceEEEecccccccchhhhhch-------------hhheee
Confidence 0 000 1111122345655543 348999986521 22233322 233567
Q ss_pred eeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 404 ~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
+.|||||++|+-. +.+..|.+|+. .+|+....+-.+-..+..++||.|.+-|+..+.+.+ .++
T Consensus 373 V~fSPd~r~IASa-------------SFDkSVkLW~g--~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKv 435 (480)
T KOG0271|consen 373 VSFSPDGRYIASA-------------SFDKSVKLWDG--RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKV 435 (480)
T ss_pred EEECCCccEEEEe-------------ecccceeeeeC--CCcchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEE
Confidence 8999999988863 44556788885 345444444445556778999999998877765554 566
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.+.... ...-.......+|. +.|||||+.++.+.
T Consensus 436 w~V~tkK----l~~DLpGh~DEVf~------vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 436 WDVRTKK----LKQDLPGHADEVFA------VDWSPDGQRVASGG 470 (480)
T ss_pred EEeeeee----ecccCCCCCceEEE------EEecCCCceeecCC
Confidence 6665332 12222233455665 78999999987664
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.54 E-value=1.3e-11 Score=134.20 Aligned_cols=269 Identities=13% Similarity=0.061 Sum_probs=158.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|++|++.+ + .....+. .........|+|||+.++.+.. ....|+++++.+++..+.......
T Consensus 11 ~~v~~~d~~t-~--~~~~~~~---~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT-L--EVTRTFP---VGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC-C--ceEEEEE---CCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 4788999854 2 1222332 2234567899999998766532 245799999998876553322221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|||+.++++.. ....|+++++
T Consensus 75 ---~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEECC
Confidence 346889999998876510 1235788888
Q ss_pred CCee-eecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~-~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+++. ..+........+.|+|||+.+++..... ..+..||.++.......... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5533 2332223456789999999998876431 24566787755432211100 23
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------ccccCceeeecCCceEEEE
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------~~~~~~~~~spDg~~l~~~ 473 (958)
...+.|+|||+.+++.. ...+.+++|++ ..+...+.+... ......+.|+|||+.++..
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV--ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc--CcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 35688999999887631 12456888986 223223333211 1112357899999987665
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
...+ .++.++|..++ +...... ....+.. ++|+|||++|+.... ....
T Consensus 225 ~~~~---~~i~v~d~~~~--~~~~~~~-~~~~~~~------~~~~~~g~~l~~~~~--------------------~~~~ 272 (300)
T TIGR03866 225 LGPA---NRVAVVDAKTY--EVLDYLL-VGQRVWQ------LAFTPDEKYLLTTNG--------------------VSND 272 (300)
T ss_pred cCCC---CeEEEEECCCC--cEEEEEE-eCCCcce------EEECCCCCEEEEEcC--------------------CCCe
Confidence 4322 24777777664 2222111 1112222 789999998876531 1225
Q ss_pred EEEEECCCCceEEEec
Q 002164 554 LDLFDINTGSKERIWE 569 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~ 569 (958)
|.+||+++++...-..
T Consensus 273 i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 273 VSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEECCCCcEEEEEE
Confidence 9999999988644433
No 77
>PLN02511 hydrolase
Probab=99.53 E-value=1.9e-13 Score=152.32 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=146.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.++..++..||..+....+.+..... ....|+||++||....+ . ..+....+..+.++||.|++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~g~s-----------~--~~y~~~~~~~~~~~g~~vv~- 134 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLTGGS-----------D--DSYVRHMLLRARSKGWRVVV- 134 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCCCCC-----------C--CHHHHHHHHHHHHCCCEEEE-
Confidence 34556777899888765554322111 11268999999953211 1 11111234456789999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEeccCC
Q 002164 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (958)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (958)
.+.+|+|.+... ..+.....+|+.++++++..+. ...++.++|+|+||.+++.++.++|+. +.+++++++.+
T Consensus 135 --~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 135 --FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred --EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 555677766432 2233456789999999998863 235899999999999999999999876 77888777654
Q ss_pred CCCC------CCC--C----cc---------------------c-----ccchh--h-----------hc-HHHHHhcCc
Q 002164 795 NRTL------TPF--G----FQ---------------------N-----EDRTL--W-----------EA-TSTYVEMSP 822 (958)
Q Consensus 795 ~~~~------~~~--~----~~---------------------~-----~~~~~--~-----------~~-~~~~~~~sp 822 (958)
+... ..+ . +. . ..... + .. .+.|...++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 00000 0 00 112344566
Q ss_pred ccccCCCCCCEEEEeeCCCCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH------HHHHHHHHHHH
Q 002164 823 FMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQ 895 (958)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~------~~~~~i~~fl~ 895 (958)
...+.++++|+|+++|++|+.+| .... ..+. .....+++++++++||.... +... -..+.+.+||.
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~~~~----~~~p~~~l~~~~~gGH~~~~-E~p~~~~~~~w~~~~i~~Fl~ 363 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPREDI----KANPNCLLIVTPSGGHLGWV-AGPEAPFGAPWTDPVVMEFLE 363 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcHhHH----hcCCCEEEEECCCcceeccc-cCCCCCCCCccHHHHHHHHHH
Confidence 67788999999999999999987 5433 2222 22345799999999997432 2211 13567889998
Q ss_pred HhhccC
Q 002164 896 KYCVSN 901 (958)
Q Consensus 896 ~~l~~~ 901 (958)
......
T Consensus 364 ~~~~~~ 369 (388)
T PLN02511 364 ALEEGK 369 (388)
T ss_pred HHHHhc
Confidence 887543
No 78
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.53 E-value=8.6e-13 Score=135.10 Aligned_cols=130 Identities=26% Similarity=0.289 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHH
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV 818 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (958)
..+-+.+.++...+.+ ++++||+++|+|.||.||+.++.+.|..++++|+.+|..-....
T Consensus 86 s~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~------------------- 145 (216)
T PF02230_consen 86 SAERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-------------------
T ss_pred HHHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-------------------
Confidence 3444455555555544 89999999999999999999999999999999999986321100
Q ss_pred hcCcccccCC-CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 819 EMSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 819 ~~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
....... -++|++++||..|.++| ...+++.++.|+..+.++++..|++.||.+. .+.+..+.+||.++
T Consensus 146 ---~~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 146 ---LEDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKH 215 (216)
T ss_dssp ---CHCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred ---ccccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhh
Confidence 0000111 16899999999999999 9999999999999999999999999999985 45578889999886
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
+
T Consensus 216 ~ 216 (216)
T PF02230_consen 216 I 216 (216)
T ss_dssp -
T ss_pred C
Confidence 3
No 79
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.52 E-value=1.1e-13 Score=149.01 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=124.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||.+... ..|..+ ......+++.||.|++ .|.+|+|.+.... .......+|+.++
T Consensus 30 ~~~ivllHG~~~~~-----------~~~~~~-~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 30 GEAVIMLHGGGPGA-----------GGWSNY-YRNIGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred CCeEEEECCCCCch-----------hhHHHH-HHHHHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 36689999954211 111100 0123456778999999 5666788875431 1111234455444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC--CCCCC----------------------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFG---------------------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~~~~---------------------- 802 (958)
++.+ +.+++.++||||||.+++.++.++|++++++|++++..... .....
T Consensus 95 l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 95 MDAL------DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHHc------CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHH
Confidence 4432 45699999999999999999999999999999988642100 00000
Q ss_pred ----ccccc-------chhhh----cHH---HHHh---------cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 803 ----FQNED-------RTLWE----ATS---TYVE---------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 803 ----~~~~~-------~~~~~----~~~---~~~~---------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
..... ...|. .+. .+.. .+....+.++++|+|+++|++|..++ ++.+.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~ 246 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLL 246 (282)
T ss_pred HhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHH
Confidence 00000 00010 010 0100 01112356789999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.++ .++++++|++||... .+....+.+.+.+||.
T Consensus 247 ~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 247 WNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred HhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 7765 368899999999974 6667788888889885
No 80
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.52 E-value=3.5e-13 Score=142.80 Aligned_cols=194 Identities=14% Similarity=0.167 Sum_probs=124.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|+||++||..... ..| .... ...++||.|++ .+.+|+|.+.... .......+|+.+.
T Consensus 13 ~~~iv~lhG~~~~~-----------~~~----~~~~-~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGSG-----------SYW----APQL-DVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcch-----------hHH----HHHH-HHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 68899999964211 111 1122 33456899999 5566777764321 1234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-------------CC-----------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-------------FG----------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-------------~~----------- 802 (958)
++.+ +.+++.++||||||.+++.++.+.|++++++|.+++........ ..
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5443 34689999999999999999999999999999888753321000 00
Q ss_pred -c----ccccch-----------h-------hhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 803 -F----QNEDRT-----------L-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 803 -~----~~~~~~-----------~-------~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
+ ...... . ......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 0 000000 0 00001111123334567789999999999999998 888888887664
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
. .+++.++++||.+. .++...+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999974 4567778888888875
No 81
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.52 E-value=5.3e-11 Score=125.61 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=122.5
Q ss_pred CCCCCceecCCCCEEEEEecC-----------CCCCchhcccccceeeceeecCCCCCcc-ceeeEeceeEEEccCCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRR-----------ALPPLEELARPEEKLAGLRIDGKCNTRS-RMSFYTGIGIHQLFPDGKL 176 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~dg~~ 176 (958)
.++..++|++||++|+-+... +...+-++.++...+.+..+.+...-+. +.+.++.+-++.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe------- 176 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE------- 176 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee-------
Confidence 367889999999999887654 4555667777777777777766543222 122222333322
Q ss_pred Cceeeecc-CC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC
Q 002164 177 GQEIEIQG-FP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 177 ~~~~~lt~-~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
|++..... +. +..-+...++||||++.+.+.. ...++++|-.+|+..-...... ...+.+-.+.||||
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPD 246 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecC---------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCC
Confidence 33333321 11 2237888999999999988653 6789999988888765544222 23444778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeee-------
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE------- 327 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~------- 327 (958)
++.|+..+.++.. +||+-....++......+.+. |..+-......+|..++++|...-
T Consensus 247 s~~~~T~SaDkt~------------KIWdVs~~slv~t~~~~~~v~---dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 247 STQFLTVSADKTI------------KIWDVSTNSLVSTWPMGSTVE---DQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred CceEEEecCCceE------------EEEEeeccceEEEeecCCchh---ceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 9999988554332 244333222211111000000 000000012334555555553322
Q ss_pred ----cCCC-ccccccccCCCCcEEEEEee
Q 002164 328 ----IGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 328 ----l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
+..+ ..++....||||++|+-.+-
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeecc
Confidence 2223 66788999999999887663
No 82
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.51 E-value=2.6e-13 Score=135.39 Aligned_cols=190 Identities=21% Similarity=0.174 Sum_probs=113.8
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCC--CCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPII--GEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~--G~G~ 728 (958)
|...||.|++... ++.|+||++||...... .|... .. ...+|+ +||+|+.+...... ....
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a~-----------~~~~~-s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSAE-----------DFAAG-SG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCHH-----------HHHhh-cC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 35899999999643221 11100 01 224554 79999986542110 0000
Q ss_pred cccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CC-cc
Q 002164 729 EEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG-FQ 804 (958)
Q Consensus 729 ~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~-~~ 804 (958)
.+.. ..........+...++++.++..+|++||++.|+|.||+|+..++..+|++|+++..++|+....... .. +.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 1100 11122345567788999999999999999999999999999999999999999999998863211110 00 00
Q ss_pred cccchhhhcHHHH-HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 805 NEDRTLWEATSTY-VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 805 ~~~~~~~~~~~~~-~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
......-..+... ....... ..-..|++|+||+.|..|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG--AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc--CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 0000000011100 0000000 0113599999999999998 88888888877653
No 83
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.51 E-value=7.3e-13 Score=143.90 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=133.1
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+.+...+|..+... |...+ ++ + .|.||++||.+... ..| ......|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~--~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--D--GPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--C--CCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE
Confidence 345566665556544322 22222 11 1 46789999964211 011 1334456678999999
Q ss_pred cCCCCCCCCCCcccch---h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 718 GPTTPIIGEGDEEAND---R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.|.+|+|.+.... . ......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6667888774421 1 2344455555444432 3358999999999999999999999999999988753
Q ss_pred CCCCCC-------CCC-cccc------------cchhh---hcHHHH----------------Hhc---Cc---------
Q 002164 794 YNRTLT-------PFG-FQNE------------DRTLW---EATSTY----------------VEM---SP--------- 822 (958)
Q Consensus 794 ~~~~~~-------~~~-~~~~------------~~~~~---~~~~~~----------------~~~---sp--------- 822 (958)
...... .+. +... ....+ +....| ... .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 210000 000 0000 00000 000000 000 00
Q ss_pred --ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
...+.++++|+|+++|++|..+| ... +++.+.+... ..+++.+++++||... .+..+.+.+.+.+||.++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666665532 1134778999999974 566788888999998764
No 84
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.50 E-value=2.3e-12 Score=131.82 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=132.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh----HHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF----VEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~----~~~~~~D~~~ 745 (958)
-|+|+++||-|... ..+.. ....|+++||.|++ .|.+|+|.+..+... ......|+.+
T Consensus 44 gP~illlHGfPe~w--------------yswr~-q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPESW--------------YSWRH-QIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCccc--------------hhhhh-hhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 69999999976432 22221 23478999999999 778899999876542 3455667766
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC-CC--------------CCCCCccc-----
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RT--------------LTPFGFQN----- 805 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-~~--------------~~~~~~~~----- 805 (958)
.++.|- -+|+.++||+||+.+|..++..+|+++++.|+.+..+. .. +....++.
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 666653 36999999999999999999999999999999876433 00 00000000
Q ss_pred ------------------------------ccchhh---hcH-------------------HHHHhcCc--ccccCCCCC
Q 002164 806 ------------------------------EDRTLW---EAT-------------------STYVEMSP--FMSANKLKK 831 (958)
Q Consensus 806 ------------------------------~~~~~~---~~~-------------------~~~~~~sp--~~~~~~~~~ 831 (958)
.....| ++. +.+....+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000111 111 11111111 234556789
Q ss_pred CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|++++.|++|...+ +..-.+.+++.-.. ..+.++++|+||+.. .++.+++.+.++.||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44223333332221 246789999999874 677889999999999875
No 85
>PRK10985 putative hydrolase; Provisional
Probab=99.49 E-value=5.1e-13 Score=145.96 Aligned_cols=229 Identities=17% Similarity=0.095 Sum_probs=136.9
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
-.++..||..+.......+. .....|+||++||.+.. ....+....+..|+++||.|+.+++
T Consensus 34 ~~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~- 95 (324)
T PRK10985 34 QRLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF- 95 (324)
T ss_pred eEEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC-
Confidence 34566788776544322111 12236999999995311 0111222355678899999999555
Q ss_pred CCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEeccCCCCC
Q 002164 722 PIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRT 797 (958)
Q Consensus 722 ~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~ 797 (958)
+|+|.+.. ...+......|+..+++++.++.. ..+++++||||||.+++.++++.++ .++++|++++.++..
T Consensus 96 --rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~ 171 (324)
T PRK10985 96 --RGCSGEPNRLHRIYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLE 171 (324)
T ss_pred --CCCCCCccCCcceECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHH
Confidence 55554421 112222357899999999988632 3589999999999988888877644 378888888765421
Q ss_pred CC------CCC--c-------------------ccc---c-------chh-------------h-hcHHHHHhcCccccc
Q 002164 798 LT------PFG--F-------------------QNE---D-------RTL-------------W-EATSTYVEMSPFMSA 826 (958)
Q Consensus 798 ~~------~~~--~-------------------~~~---~-------~~~-------------~-~~~~~~~~~sp~~~~ 826 (958)
.. .+. + ... . ... + ...+.|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l 251 (324)
T PRK10985 172 ACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLL 251 (324)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHH
Confidence 00 000 0 000 0 000 0 011233344555667
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----cHHHHHHHHHHHHHHhh
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (958)
.++++|+|+++|++|..++ +.....+.+ ....+++++++++||...... ...-.-+.+.+||..++
T Consensus 252 ~~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 252 NQIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred hCCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 8899999999999999987 655444422 223578889999999743211 11223345788887765
No 86
>PLN00021 chlorophyllase
Probab=99.48 E-value=2.8e-12 Score=137.08 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=133.6
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~ 729 (958)
..+++.+|+|.. .+.+|+||++||+... .......+..|+++||+|++++.++..+.+
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~-- 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-- 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC--
Confidence 468889999964 2359999999996321 111234566789999999997765432211
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEeccCCCC
Q 002164 730 EANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNR 796 (958)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~ 796 (958)
....+.|..++++|+.+. ..+|.++++++|||+||.+++.++.+.++ +|+++|.+.|+...
T Consensus 95 ------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 ------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred ------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 123345667777887752 23677899999999999999999998764 58888988886442
Q ss_pred CCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCC---------CCCCChH-HHHHHHHHHHhCCCcEE
Q 002164 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTM-QSDRFFNALKGHGALCR 866 (958)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~-~~~~~~~~l~~~g~~~~ 866 (958)
.... .. .+..+ .+.+ ..-++..|+|++++..|. ..| .. +-.++|++++. ++.
T Consensus 169 ~~~~------~~----~p~il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap--~~~~~~~f~~~~~~---~~~ 230 (313)
T PLN00021 169 SKGK------QT----PPPVL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAP--DGVNHAEFFNECKA---PAV 230 (313)
T ss_pred cccc------CC----CCccc-ccCc--ccccCCCCeEEEecCCCcccccccccccCC--CCCCHHHHHHhcCC---Cee
Confidence 2110 00 00000 1111 122367999999999763 222 33 34778887655 578
Q ss_pred EEEeCCCCccCCCc----------------------ccHHHHHHHHHHHHHHhhccCC
Q 002164 867 LVILPFESHGYAAR----------------------ESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 867 ~~~~p~~~H~~~~~----------------------~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
+.+.++++|.-.-. ..+..+...+..||..+|.+..
T Consensus 231 ~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 231 HFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 88899999963211 1123344568999999997644
No 87
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.46 E-value=1.1e-11 Score=118.67 Aligned_cols=272 Identities=14% Similarity=0.147 Sum_probs=179.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|.+|.+.+ | .-.+.+. +++ ..++....+||++.||... ..+|.++|+.++.+.++......
T Consensus 20 hTIRfWqa~t-G--~C~rTiq-h~d-sqVNrLeiTpdk~~LAaa~----------~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT-G--ICSRTIQ-HPD-SQVNRLEITPDKKDLAAAG----------NQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc-C--eEEEEEe-cCc-cceeeEEEcCCcchhhhcc----------CCeeEEEEccCCCCCceeEEecc--
Confidence 6899999865 2 2234443 332 3688899999999998853 77899999999887665443331
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
+..+..+.|--||++++..+ .+ +.-.||.+. .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs---------------------eD--------------------------gt~kIWdlR-~ 114 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS---------------------ED--------------------------GTVKIWDLR-S 114 (311)
T ss_pred CCceEEEEEeecCeEEEecC---------------------CC--------------------------ceEEEEecc-C
Confidence 12267888999999999661 11 222344332 4
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccC
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
-..+++... ..+..+...|+-..|+.... .+.|++||+..... .+|...+ ...
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~------------~~~ 169 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPED------------DTS 169 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCC------------Ccc
Confidence 444455444 67888899998777765542 34899999986532 3332211 134
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE------EeeccccCceeeecCCceEEEEE
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL------HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
++++...|||+.++-. ..++..|+|++ +.......+ ...++.+....+|||+++|+..+
T Consensus 170 i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 5789999999988774 55778899996 333322222 23344556689999999999887
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeE
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (958)
.+++ ..||..+-- .+.....+....+++. -.||.||++|+....+ ...
T Consensus 235 sdkt--v~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd---------------------~~~ 282 (311)
T KOG0315|consen 235 SDKT--VKIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD---------------------HTA 282 (311)
T ss_pred CCce--EEEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------Cce
Confidence 7665 456655432 1333444555556665 6799999999877632 257
Q ss_pred EEEECCCCceEEEecCC
Q 002164 555 DLFDINTGSKERIWESD 571 (958)
Q Consensus 555 ~~~dl~~g~~~~l~~~~ 571 (958)
.+|++..++..+.+.+.
T Consensus 283 rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eecccccCceeeecCCc
Confidence 78999999888877654
No 88
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.46 E-value=3.4e-12 Score=137.09 Aligned_cols=209 Identities=18% Similarity=0.124 Sum_probs=126.7
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|..+.....-+. ..|+||++||.+... ..| ......| +++|.|+. .+.+|+
T Consensus 13 ~~~~~~~~~~~g~~--------~~~~vv~~hG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~ 65 (278)
T TIGR03056 13 VGPFHWHVQDMGPT--------AGPLLLLLHGTGAST-----------HSW----RDLMPPL-ARSFRVVA---PDLPGH 65 (278)
T ss_pred ECCEEEEEEecCCC--------CCCeEEEEcCCCCCH-----------HHH----HHHHHHH-hhCcEEEe---ecCCCC
Confidence 36777654333211 147899999953211 111 1223333 45799999 566678
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC----
Q 002164 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (958)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (958)
|.+.... .......+|+.++++.+ +.++++|+||||||.+++.++.+.|++++++|++++.+.....
T Consensus 66 G~S~~~~~~~~~~~~~~~~l~~~i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 139 (278)
T TIGR03056 66 GFTRAPFRFRFTLPSMAEDLSALCAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGT 139 (278)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccccccccccc
Confidence 8765432 22345555555544332 2357899999999999999999999999989888764331100
Q ss_pred --C----------CC-------ccccc--c-------hhhhc--HHHHH-----------------hcC---cccccCCC
Q 002164 800 --P----------FG-------FQNED--R-------TLWEA--TSTYV-----------------EMS---PFMSANKL 829 (958)
Q Consensus 800 --~----------~~-------~~~~~--~-------~~~~~--~~~~~-----------------~~s---p~~~~~~~ 829 (958)
+ +. ..... . ..+.. ...+. .+. ....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 219 (278)
T TIGR03056 140 LFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRI 219 (278)
T ss_pred ccchhhHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccC
Confidence 0 00 00000 0 00000 00000 000 11235678
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|+|+++|++|..+| ....+++.+.+.. .+++.+|++||.+. .+....+.+.+.+||+
T Consensus 220 ~~P~lii~g~~D~~vp--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVP--PDESKRAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred CCCEEEEEeCCCcccC--HHHHHHHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 8999999999999998 7877777665543 58889999999875 4556778888888873
No 89
>PLN02872 triacylglycerol lipase
Probab=99.45 E-value=2.5e-12 Score=141.69 Aligned_cols=248 Identities=15% Similarity=0.096 Sum_probs=153.6
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.|+..+++.||..|....+.+.. ......+.|+||++||....+..+. ...+ ....+..|+++||
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~~w~---~~~~------~~sla~~La~~Gy 108 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGDAWF---LNSP------EQSLGFILADHGF 108 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccccee---ecCc------ccchHHHHHhCCC
Confidence 3457789999999999999877664322 1111123578999999653322211 0000 1123446889999
Q ss_pred EEEEcCCCCCCC-CCCcc---c-----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--
Q 002164 714 AILGGPTTPIIG-EGDEE---A-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-- 782 (958)
Q Consensus 714 ~vl~~~~~~~~G-~G~~~---~-----~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-- 782 (958)
.|+.+|.||... +|... . ...+.+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 109 dV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~ 184 (395)
T PLN02872 109 DVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVV 184 (395)
T ss_pred CcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHH
Confidence 999966665321 12111 1 11222334579999999998752 36899999999999998555 4555
Q ss_pred -ceeEEEEeccCCCCCC-----------------------CCC-----------------------------Ccccc---
Q 002164 783 -LFCCGIARSGAYNRTL-----------------------TPF-----------------------------GFQNE--- 806 (958)
Q Consensus 783 -~~~a~v~~~~~~~~~~-----------------------~~~-----------------------------~~~~~--- 806 (958)
+++++++.+|+..... ..+ ++...
T Consensus 185 ~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~ 264 (395)
T PLN02872 185 EMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNA 264 (395)
T ss_pred HHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccch
Confidence 4666666665421000 000 00000
Q ss_pred -----------cc--------------------h---hhhcHHHHHhc-CcccccCCC--CCCEEEEeeCCCCCCCCChH
Q 002164 807 -----------DR--------------------T---LWEATSTYVEM-SPFMSANKL--KKPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 807 -----------~~--------------------~---~~~~~~~~~~~-sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~ 849 (958)
.+ . ...+...|... -|...+.++ ++|+++++|++|..++ +.
T Consensus 265 ~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~~ 342 (395)
T PLN02872 265 SRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--VT 342 (395)
T ss_pred hhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--HH
Confidence 00 0 00011122222 345677888 5799999999999998 88
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHhhcc
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
..+++.+.+... .++..+++.+|. +...+..+.+++.|++||+++...
T Consensus 343 dv~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 343 DVEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred HHHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 888888877542 578889999997 445677788999999999987643
No 90
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.45 E-value=2.4e-11 Score=130.12 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=167.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+.|+|||+.|++...+ +.+.+|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 57789999999999988754 4789999854 1 12333432 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+|+++.|++... ...|++++..+++........... +..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~------- 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTSY----VSSVAFSPDGRILSSSS------- 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCCc----EEEEEEcCCCCEEEEec-------
Confidence 5668999999988888542 568889998875433322222211 66899999988777651
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++.. .+... ..+..+.|+|+++.|
T Consensus 113 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 113 ------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 1345778887 56433 33323 567889999998887
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+.... .+.+.+||+..+.. ..+... ...+..+.|+|||+.+++.
T Consensus 151 ~~~~~-------------~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~--------- 195 (289)
T cd00200 151 ASSSQ-------------DGTIKLWDLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSS--------- 195 (289)
T ss_pred EEEcC-------------CCcEEEEEccccccceeEecC-------------ccccceEEECCCcCEEEEe---------
Confidence 76652 23899999984433 222211 1245789999999888774
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+..+.+.+|+. ..+.....+......+..+.|+|++..++... .+ ..++.++...+ ............
T Consensus 196 ----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---~~i~i~~~~~~--~~~~~~~~~~~~ 263 (289)
T cd00200 196 ----SSDGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-ED---GTIRVWDLRTG--ECVQTLSGHTNS 263 (289)
T ss_pred ----cCCCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc-CC---CcEEEEEcCCc--eeEEEccccCCc
Confidence 33567888985 22333333334455677899999966655543 22 23555565543 222222222222
Q ss_pred ccCCCCCCceEeccCCceEEEEe
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.. +.|+|+|+.|+...
T Consensus 264 i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 264 VTS------LAWSPDGKRLASGS 280 (289)
T ss_pred EEE------EEECCCCCEEEEec
Confidence 222 78999998877665
No 91
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.45 E-value=4.5e-12 Score=142.11 Aligned_cols=221 Identities=13% Similarity=0.143 Sum_probs=133.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH---HCCcEEEEcC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILGGP 719 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~vl~~~ 719 (958)
.+.+..|.+++.....|++. .+.|.||++||.+.... .| .......|+ +++|.|++
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s~~-----------~W---~~~~~~~L~~~~~~~yrVia-- 237 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISSSA-----------FW---TETLFPNFSDAAKSTYRLFA-- 237 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCccHH-----------HH---HHHHHHHHHHHhhCCCEEEE--
Confidence 44455678898888888641 12467899999642110 11 111112333 47999999
Q ss_pred CCCCCCCCCcccchh--h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGEGDEEANDR--F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~--~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
.|.+|+|.+..... + .....+|+. ..+.+. .+.+++.++||||||.+++.++.++|++++++|++++....
T Consensus 238 -~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~ 311 (481)
T PLN03087 238 -VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYP 311 (481)
T ss_pred -ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccc
Confidence 56667887754321 1 223333332 123332 23358999999999999999999999999999998864321
Q ss_pred CCC---------------C-C---Ccccc--------cc----------hhhhcH----------HHHH----hc--Ccc
Q 002164 797 TLT---------------P-F---GFQNE--------DR----------TLWEAT----------STYV----EM--SPF 823 (958)
Q Consensus 797 ~~~---------------~-~---~~~~~--------~~----------~~~~~~----------~~~~----~~--sp~ 823 (958)
... . + .+... .. ..|+.. ..+. .. .+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 391 (481)
T PLN03087 312 VPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAA 391 (481)
T ss_pred cccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhh
Confidence 100 0 0 00000 00 001100 0000 00 000
Q ss_pred --------------------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002164 824 --------------------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (958)
Q Consensus 824 --------------------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 883 (958)
....++++|+|++||++|..+| ++.++.+.+.+.. .+++++|++||.....+..
T Consensus 392 ~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p 465 (481)
T PLN03087 392 WHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQ 465 (481)
T ss_pred HHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCH
Confidence 0112588999999999999998 8888888777654 5899999999986434566
Q ss_pred HHHHHHHHHHHHH
Q 002164 884 MHVLWETDRWLQK 896 (958)
Q Consensus 884 ~~~~~~i~~fl~~ 896 (958)
..+.+.+.+|...
T Consensus 466 ~~fa~~L~~F~~~ 478 (481)
T PLN03087 466 KEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHhhc
Confidence 7777788877643
No 92
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.45 E-value=4.5e-12 Score=134.27 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=123.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (958)
.|.||++||.+... ..| ...+..| +.+|.|+. .|.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58899999964211 111 1223333 46799999 5666788765432 234566778888777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CCCCC-------------CCCccccc--chh--
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT-------------PFGFQNED--RTL-- 810 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~-------------~~~~~~~~--~~~-- 810 (958)
++ ..+++.++||||||.+++.++.+.|++++++|.+++.. ..... ........ ...
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 64 33579999999999999999999999999999875321 11000 00000000 000
Q ss_pred --------------------hh--cH---HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 002164 811 --------------------WE--AT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (958)
Q Consensus 811 --------------------~~--~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (958)
|. .+ ..+........+.++++|+|+++|++|..++ ....+.+.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 00 0111111122345678999999999999987 666666655543 36
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 866 ~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++.+++++||... .+....+.+.+.+||..
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999864 56677788889998865
No 93
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.45 E-value=7.6e-13 Score=139.38 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=119.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (958)
.|+||++||.+... ..| ...+.. .++||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 13 ~~~li~~hg~~~~~-----------~~~----~~~~~~-l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTDL-----------RMW----DPVLPA-LTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccch-----------hhH----HHHHHH-hhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999953110 111 122333 457999999 5666777764332 12344555555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CC----------C--------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF----------G-------------- 802 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~----------~-------------- 802 (958)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+ .
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 433 3468999999999999999999999999999887754321110 00 0
Q ss_pred --cccccch---hhh------cH-------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 803 --FQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 803 --~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+...++.+.++ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000000 000 00 0011112233456788999999999999998 777777766654 3
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+++++|+++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 58889999999874 455666677777775
No 94
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.45 E-value=1.8e-12 Score=143.18 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=156.4
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+....++++++||++|.+.+|+|++ .++.|+++..+-.|....+.. .+ ... ........|+++||+|+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~~---~~--~~~--~~~p~~~~~aa~GYavV 84 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNGT---FG--PQL--SALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccccccc---Cc--chh--hcccccceeecCceEEE
Confidence 5567789999999999999999986 356999999884443322100 00 000 00000126899999999
Q ss_pred EcCCCCCCCCCCcccchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
. -|.+|.|.|++.-.... .+.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..|
T Consensus 85 ~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 85 N---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred E---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 9 55667777777543333 48999999999999999987 6999999999999999999999999999999888765
Q ss_pred CCCCC--------------CC-----c------cc-----------------------ccchhhh------c--H-HHHH
Q 002164 796 RTLTP--------------FG-----F------QN-----------------------EDRTLWE------A--T-STYV 818 (958)
Q Consensus 796 ~~~~~--------------~~-----~------~~-----------------------~~~~~~~------~--~-~~~~ 818 (958)
..... |. . .. .+..+|. . . ..|.
T Consensus 161 ~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~ 240 (563)
T COG2936 161 RYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWR 240 (563)
T ss_pred ccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhh
Confidence 32110 00 0 00 0000010 0 0 1233
Q ss_pred hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-----HHHHHHHHHHH
Q 002164 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDRW 893 (958)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~-----~~~~~~~i~~f 893 (958)
+.+-.....++++|+|++.|-.|.. ...+.++|+.++.. +..+++=|- .|....... .....+.-.+|
T Consensus 241 ~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~ 313 (563)
T COG2936 241 RGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDF 313 (563)
T ss_pred ccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhh
Confidence 3344556778999999999999975 35567788877764 456666563 554321111 23334445556
Q ss_pred HHHhhc
Q 002164 894 LQKYCV 899 (958)
Q Consensus 894 l~~~l~ 899 (958)
|..++.
T Consensus 314 l~~~~~ 319 (563)
T COG2936 314 LDAYLD 319 (563)
T ss_pred hhHhhh
Confidence 655554
No 95
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.45 E-value=3.4e-12 Score=138.24 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=122.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (958)
|.||++||.+..+ ..|. .....|+.+ |.|++ .|.+|+|.+.... ..+....+
T Consensus 30 ~~vlllHG~~~~~-----------~~w~----~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHWR----KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHHH----HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6789999964321 1111 234456655 68998 6667888875432 12344455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---CCC-CCc------cc---c--
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~-~~~------~~---~-- 806 (958)
|+.+.++.+ + .+++.++||||||.+++.++.++|++++++|++++..... ... +.. .. .
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 555555433 2 2589999999999999999999999999999988643110 000 000 00 0
Q ss_pred ---------c-----chh----hhc-----H----------------HHHHh---cC----cccccCCCCCCEEEEeeCC
Q 002164 807 ---------D-----RTL----WEA-----T----------------STYVE---MS----PFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 807 ---------~-----~~~----~~~-----~----------------~~~~~---~s----p~~~~~~~~~P~Lii~G~~ 840 (958)
. ... +.. . ..+.. .. ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 00000 00 1123567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|..+| ...++.+.+.. ...++++++++||... .+....+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77666643322 2358899999999874 677788899999998764
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.44 E-value=7.3e-11 Score=128.22 Aligned_cols=245 Identities=13% Similarity=0.050 Sum_probs=146.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~~ 189 (958)
...+.|||||+.++.+... + ..|++|++.+ +.. +.+. .+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~----------------------~----------~~v~~~d~~~----~~~~~~~~---~~~ 73 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD----------------------S----------DTIQVIDLAT----GEVIGTLP---SGP 73 (300)
T ss_pred CCceEECCCCCEEEEEECC----------------------C----------CeEEEEECCC----CcEEEecc---CCC
Confidence 4578999999987655432 1 3688998754 332 2232 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......|+|||+.++.+.. ....|+++|+.+++.......... ...++|+|||+.+++...
T Consensus 74 ~~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------ 134 (300)
T TIGR03866 74 DPELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------ 134 (300)
T ss_pred CccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec------
Confidence 3567899999997766431 234799999987654332221111 457899999999887611
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~ 347 (958)
....++.++. +++... +........+.|+|||++|+
T Consensus 135 ------------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 135 ------------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW 172 (300)
T ss_pred ------------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence 0112444566 553322 22223345678999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.+++..
T Consensus 173 ~~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~--------- 225 (300)
T TIGR03866 173 VSSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL--------- 225 (300)
T ss_pred EEcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc---------
Confidence 77532 34899999986543 3333210 00000 001234688999999865521
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.+.+|+. .+++..........+..+.|+|||++|+.+...+ ..|.++|+.++
T Consensus 226 ---~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 226 ---GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred ---CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 22446888885 4444433323334567899999999987664333 35778887775
No 97
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.44 E-value=7.2e-12 Score=134.21 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=133.4
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.+..... . ..|.||++||.+... ..| ......| +.+|.|++ .|.+|+
T Consensus 9 ~~~~~~~~~~~~~~------~-~~~plvllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPGK------E-GLTPLLIFNGIGANL-----------ELV----FPFIEAL-DPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecCC------C-CCCcEEEEeCCCcch-----------HHH----HHHHHHh-ccCceEEE---ECCCCC
Confidence 37777776554211 1 135688899953211 111 1223333 45799999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC------
Q 002164 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (958)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------ 798 (958)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 12455666776666664 235799999999999999999999999999999986542110
Q ss_pred -----CC-CCcccc------cchhh-----hcHH----------------HHH------hcCcccccCCCCCCEEEEeeC
Q 002164 799 -----TP-FGFQNE------DRTLW-----EATS----------------TYV------EMSPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 799 -----~~-~~~~~~------~~~~~-----~~~~----------------~~~------~~sp~~~~~~~~~P~Lii~G~ 839 (958)
.. ..+... ..... .+++ .+. .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 00000 0000 000 011123357889999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+|..+| +..+.++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.-
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhh
Confidence 999998 8888888776643 47778886 99864 5667888899999998764
No 98
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.43 E-value=3.3e-12 Score=138.77 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=127.0
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.+...+|.+++...+-++ + .+.||++||++.... .......+..++|.|++ .|
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 455557887765443211 1 245788999753210 01122234457899999 56
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC-----
Q 002164 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (958)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~----- 797 (958)
.+|+|.+............|+.+.+..+.+. .+.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 6678877543221111223333334444443 233589999999999999999999999999988876532100
Q ss_pred --------CCC-----C--Ccccccc------------------------hh---hhc----------------HH---H
Q 002164 798 --------LTP-----F--GFQNEDR------------------------TL---WEA----------------TS---T 816 (958)
Q Consensus 798 --------~~~-----~--~~~~~~~------------------------~~---~~~----------------~~---~ 816 (958)
..+ + ....... .. |.. +. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0 0000000 00 000 00 0
Q ss_pred HHh-----------cC----cccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 817 ~~~-----------~s----p~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
+.. .+ -...+.++ ++|+|++||++|..+| +..+.++++.+.. .++++++++||....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~gH~~~~~ 292 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFPE----AELKVTNNAGHSAFDP 292 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCCC----CEEEEECCCCCCCCCh
Confidence 000 00 01233456 5899999999999998 8888888877643 5888999999997533
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 002164 881 ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (958)
...+.+.+|+..+|
T Consensus 293 ----~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 293 ----NNLAALVHALETYL 306 (306)
T ss_pred ----HHHHHHHHHHHHhC
Confidence 34577777777664
No 99
>PLN02965 Probable pheophorbidase
Probab=99.43 E-value=4.1e-12 Score=134.29 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=115.2
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
....|++.||.|++ .|.+|+|.+.... .......+|+.+.++.+ + + .+++.++||||||.+++.++.++
T Consensus 22 ~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~ 93 (255)
T PLN02965 22 LATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL---P-P-DHKVILVGHSIGGGSVTEALCKF 93 (255)
T ss_pred HHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc---C-C-CCCEEEEecCcchHHHHHHHHhC
Confidence 34567788999999 6667888775332 12455566666666543 1 1 14899999999999999999999
Q ss_pred CCceeEEEEeccCC---CCC-CC-----------CCCc--ccc---c-------chhh-----h--cHH--HH--Hhc--
Q 002164 781 PHLFCCGIARSGAY---NRT-LT-----------PFGF--QNE---D-------RTLW-----E--ATS--TY--VEM-- 820 (958)
Q Consensus 781 p~~~~a~v~~~~~~---~~~-~~-----------~~~~--~~~---~-------~~~~-----~--~~~--~~--~~~-- 820 (958)
|++++++|.+++.. ... .. .+.+ ... . .... . ..+ .+ ...
T Consensus 94 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (255)
T PLN02965 94 TDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRP 173 (255)
T ss_pred chheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 99999999887641 100 00 0000 000 0 0000 0 000 00 000
Q ss_pred Ccc----------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 821 SPF----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 821 sp~----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
.+. ..+.++++|+|+++|++|..+| +..++.+.+.+.. .++++++++||+.. .+..+.+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~~~----a~~~~i~~~GH~~~-~e~p~~v~~~l 246 (255)
T PLN02965 174 APVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENWPP----AQTYVLEDSDHSAF-FSVPTTLFQYL 246 (255)
T ss_pred CCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhCCc----ceEEEecCCCCchh-hcCHHHHHHHH
Confidence 000 1223588999999999999998 8877777766554 48889999999975 56777888888
Q ss_pred HHHHHH
Q 002164 891 DRWLQK 896 (958)
Q Consensus 891 ~~fl~~ 896 (958)
.+|++.
T Consensus 247 ~~~~~~ 252 (255)
T PLN02965 247 LQAVSS 252 (255)
T ss_pred HHHHHH
Confidence 888765
No 100
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.43 E-value=1.7e-12 Score=131.37 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---------CCCccccc--chh
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED--RTL 810 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---------~~~~~~~~--~~~ 810 (958)
-++.|++||++++.+++++|+|+|.|.||-+|+.+|++.| .++++|+++|..-.... ++.+.... ...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4678999999999999999999999999999999999996 79999999874221110 00000000 000
Q ss_pred hhcH------HHHH------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCcc
Q 002164 811 WEAT------STYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (958)
Q Consensus 811 ~~~~------~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~p~~~H~ 876 (958)
+... ..+. .....-.++++++|+|+++|++|...|. ...+..+.++|+..|.+ ++++.||++||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS-~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPS-SEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-H-HHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccch-HHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 0000 0000 0011224667899999999999999872 33456788889988865 889999999998
Q ss_pred CCCc---------------------------ccHHHHHHHHHHHHHHhhc
Q 002164 877 YAAR---------------------------ESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 877 ~~~~---------------------------~~~~~~~~~i~~fl~~~l~ 899 (958)
+..+ ....+...++++||+++|.
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6321 0235677889999999985
No 101
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.42 E-value=9.4e-12 Score=137.73 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=122.4
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..+..|+++||.|+++| .+|.|.+............|+.++++++.++. ..+++.++|||+||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D---~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLID---WGYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEe---CCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 46778999999999954 45555543333333333456889999998874 33589999999999999999999999
Q ss_pred ceeEEEEeccCCCCCCCC-----C-------------Cccc------------ccchhh----------hcHH---HHH-
Q 002164 783 LFCCGIARSGAYNRTLTP-----F-------------GFQN------------EDRTLW----------EATS---TYV- 818 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~-----~-------------~~~~------------~~~~~~----------~~~~---~~~- 818 (958)
+++++|+.+++.+..... + +... .....| .+++ .|.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999998876632110 0 0000 000000 0100 000
Q ss_pred --h--cC--c-----------------------------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCC
Q 002164 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (958)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (958)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01245678999999999999998 8888888887654 4
Q ss_pred cEEEEEeCCCCccC-C-CcccHHHHHHHHHHHHHH
Q 002164 864 LCRLVILPFESHGY-A-ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 864 ~~~~~~~p~~~H~~-~-~~~~~~~~~~~i~~fl~~ 896 (958)
.++++++++ ||.. . ......+++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 7764 2 233457888999999875
No 102
>COG0400 Predicted esterase [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=122.43 Aligned_cols=129 Identities=23% Similarity=0.213 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHH
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (958)
.....+.++++.+.++..+|.+|++++|+|.|+.+++.+..+.|+.++++|+.+|.+-....
T Consensus 78 ~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~------------------ 139 (207)
T COG0400 78 LETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE------------------ 139 (207)
T ss_pred HHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc------------------
Confidence 44556667777777777799999999999999999999999999999999999986432110
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..-..-.+|+|++||+.|++|| ...+.++.+.|+..|..++...++ .||.+. .+.++.+.+|+...
T Consensus 140 ------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~ 205 (207)
T COG0400 140 ------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANT 205 (207)
T ss_pred ------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhc
Confidence 0011225899999999999999 999999999999999999999999 699985 34467777888765
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
+
T Consensus 206 ~ 206 (207)
T COG0400 206 L 206 (207)
T ss_pred c
Confidence 3
No 103
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.42 E-value=1.3e-11 Score=138.33 Aligned_cols=204 Identities=17% Similarity=0.118 Sum_probs=122.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHH-H
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAE-A 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~-~ 745 (958)
.|+||++||.+... ..| ......|+ ++|.|++ .|.+|+|.+..... ........+. +
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58899999964211 001 12233444 4699999 66667777644321 1111111222 2
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-C-----------C-----------C
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~-----------~-----------~ 802 (958)
+.+|+.+. +.+++.++||||||++++.++.++|++++++|+.++..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 23344333 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred ccc--------c------cchh-------h-------hcHHHH---H-----------------------hcCcc-cccC
Q 002164 803 FQN--------E------DRTL-------W-------EATSTY---V-----------------------EMSPF-MSAN 827 (958)
Q Consensus 803 ~~~--------~------~~~~-------~-------~~~~~~---~-----------------------~~sp~-~~~~ 827 (958)
+.. . .... . +....+ . ...+. ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 000 0 0000 0 000000 0 01111 2356
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++++|+|+++|++|..++ ....++.+.+ +.+++++++|++||... .++...+.+.+.+|++.++....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 788999999999998653 5555554433 34578999999999864 66778889999999999987543
No 104
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.40 E-value=9.1e-12 Score=134.91 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=129.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++...+ + . .|.||++||.+.... .| ...+..|++++ .|++ .|.+|+|
T Consensus 15 ~g~~i~y~~~---G-----~--g~~vvllHG~~~~~~-----------~w----~~~~~~L~~~~-~via---~D~~G~G 65 (295)
T PRK03592 15 LGSRMAYIET---G-----E--GDPIVFLHGNPTSSY-----------LW----RNIIPHLAGLG-RCLA---PDLIGMG 65 (295)
T ss_pred CCEEEEEEEe---C-----C--CCEEEEECCCCCCHH-----------HH----HHHHHHHhhCC-EEEE---EcCCCCC
Confidence 7777765443 1 1 367888999642211 11 13345666675 8998 5666888
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-CCCC--
Q 002164 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TPFG-- 802 (958)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~~~-- 802 (958)
.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+++++..... ..+.
T Consensus 66 ~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~ 139 (295)
T PRK03592 66 ASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPA 139 (295)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchh
Confidence 775432 12345556665555543 235899999999999999999999999999999886422100 0000
Q ss_pred -------cc--c--c------c---chhhh-------cH---HHHH-----------------hcCc-------------
Q 002164 803 -------FQ--N--E------D---RTLWE-------AT---STYV-----------------EMSP------------- 822 (958)
Q Consensus 803 -------~~--~--~------~---~~~~~-------~~---~~~~-----------------~~sp------------- 822 (958)
+. . . . ...+. .+ ..+. ...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (295)
T PRK03592 140 VRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEE 219 (295)
T ss_pred HHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhH
Confidence 00 0 0 0 00000 00 0000 0000
Q ss_pred -ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 823 -FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 823 -~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
...+.++++|+|+++|++|..++ +....++...+.. ..++.+++++||... .+....+.+.+.+|+.+..
T Consensus 220 ~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 220 YAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred hHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 01235678999999999999985 5555555544332 368889999999985 5677888999999998753
No 105
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.40 E-value=4.5e-12 Score=133.35 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=115.0
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH-HHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a-v~~ 749 (958)
|+||++||.+... ..| ......|+ +||.|+. .+.+|+|.+..........++++... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6789999953211 111 13344555 8999999 55667777754322112223333332 444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-----CC--------cccc----------
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG--------FQNE---------- 806 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~--------~~~~---------- 806 (958)
+.+. .+.+++.++|||+||.+++.++.++|+.++++++.++........ +. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4443 245689999999999999999999999999999987653311100 00 0000
Q ss_pred ----cch---hhhc-----------------HHHHH------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 807 ----DRT---LWEA-----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 807 ----~~~---~~~~-----------------~~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
... .... ...+. ..+....+.++++|+|+++|++|..++ ....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 000 0000 00000 011223456789999999999997643 33333
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+......++++++|++||.+. .++...+...+.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334578999999999874 455567777788776
No 106
>PRK11071 esterase YqiA; Provisional
Probab=99.40 E-value=1.5e-11 Score=122.24 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=106.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
|.||++||... ++..+. .......+.+ .+|.|++++. +|++ . +..+.++
T Consensus 2 p~illlHGf~s-----------s~~~~~--~~~~~~~l~~~~~~~~v~~~dl---~g~~---------~----~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFNS-----------SPRSAK--ATLLKNWLAQHHPDIEMIVPQL---PPYP---------A----DAAELLE 52 (190)
T ss_pred CeEEEECCCCC-----------CcchHH--HHHHHHHHHHhCCCCeEEeCCC---CCCH---------H----HHHHHHH
Confidence 67999999531 111111 0112234444 3799999544 4542 1 2333444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC------C-CCcccccchhh--hcHHHHHh
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------P-FGFQNEDRTLW--EATSTYVE 819 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~------~-~~~~~~~~~~~--~~~~~~~~ 819 (958)
.+.++. +.+++.++|+|+||++++.++.+.|. + +|+++|..+.... . ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 444432 23589999999999999999999973 3 4667776552100 0 00000001111 11122222
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
..+.. +. ...|++++||++|..|| +.++.+++++ +++++++|++|.+... +.+.+.+.+|+.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 33222 33 66789999999999999 9999999984 3556789999999544 667888888874
No 107
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.40 E-value=8.3e-11 Score=112.78 Aligned_cols=270 Identities=9% Similarity=0.058 Sum_probs=170.6
Q ss_pred CCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhh
Q 002164 217 SKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ 296 (958)
Q Consensus 217 ~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (958)
....|..|.+.+|...+-...++.. +..+..+||++.|+.+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsq----VNrLeiTpdk~~LAaa----------------------------------- 58 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQ----VNRLEITPDKKDLAAA----------------------------------- 58 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccc----eeeEEEcCCcchhhhc-----------------------------------
Confidence 4667888899999988877777654 7788999999999976
Q ss_pred hhccCchhhhHHHHhhcceEEEEEc-CCeeeecC---CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 297 DLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG---PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~---~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
+..+|-++|+ ++...++. .. .++..+.|.-||+|++..+.+ +.+.||
T Consensus 59 ---------------~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~kIW 110 (311)
T KOG0315|consen 59 ---------------GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVKIW 110 (311)
T ss_pred ---------------cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEEEE
Confidence 4556778888 66543332 22 778899999999999887743 589999
Q ss_pred eccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE
Q 002164 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL 451 (958)
Q Consensus 372 d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l 451 (958)
|+..-...++...+ ..+..+...|+...|+.- +..+.|++||+ .+..-..++
T Consensus 111 dlR~~~~qR~~~~~-------------spVn~vvlhpnQteLis~-------------dqsg~irvWDl--~~~~c~~~l 162 (311)
T KOG0315|consen 111 DLRSLSCQRNYQHN-------------SPVNTVVLHPNQTELISG-------------DQSGNIRVWDL--GENSCTHEL 162 (311)
T ss_pred eccCcccchhccCC-------------CCcceEEecCCcceEEee-------------cCCCcEEEEEc--cCCcccccc
Confidence 99864444443332 223566777877666652 55678999996 222233444
Q ss_pred -EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeee
Q 002164 452 -HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 452 -~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
...+..+.++...|||+.|+...+.++ .-+|.+--+........+........+. ....+|||+++|+..+.+
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~--cyvW~l~~~~~~s~l~P~~k~~ah~~~i----l~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGN--CYVWRLLNHQTASELEPVHKFQAHNGHI----LRCLLSPDVKYLATCSSD 236 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCcc--EEEEEccCCCccccceEhhheecccceE----EEEEECCCCcEEEeecCC
Confidence 445566788999999999987755543 3344443322111222222222222121 115689999999887632
Q ss_pred ccCCCcEEEEccCCCCCCCCCCeEEEEECCCC-ceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCc
Q 002164 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (958)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (958)
..+++|+.++- +......+..+ |. . +.+||.||.+|+ +.++. .
T Consensus 237 ---------------------ktv~iwn~~~~~kle~~l~gh~r-Wv---W-------dc~FS~dg~Ylv-Tassd---~ 280 (311)
T KOG0315|consen 237 ---------------------KTVKIWNTDDFFKLELVLTGHQR-WV---W-------DCAFSADGEYLV-TASSD---H 280 (311)
T ss_pred ---------------------ceEEEEecCCceeeEEEeecCCc-eE---E-------eeeeccCccEEE-ecCCC---C
Confidence 25888988776 44443333322 22 1 367899987554 44443 2
Q ss_pred eEEEEECCCCCeeE
Q 002164 610 QYYIQSWPDKKSCQ 623 (958)
Q Consensus 610 ~~~~~d~~~g~~~~ 623 (958)
...+++++.++..+
T Consensus 281 ~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 281 TARLWDLSAGKEVR 294 (311)
T ss_pred ceeecccccCceee
Confidence 34566777776443
No 108
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.39 E-value=8.4e-11 Score=114.81 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=171.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCC-CCC-ceeeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDG-KLG-QEIEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg-~~~-~~~~lt~~~~ 187 (958)
++.++++.+.+..+++...+ + ..+.+|++..|. ..| ..++++++.
T Consensus 17 ~Vt~la~~~~~~~~l~sasr----------------------D----------k~ii~W~L~~dd~~~G~~~r~~~GHs- 63 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR----------------------D----------KTIIVWKLTSDDIKYGVPVRRLTGHS- 63 (315)
T ss_pred eEEEEEeecCCCceEEEccc----------------------c----------eEEEEEEeccCccccCceeeeeeccc-
Confidence 45567777777777766553 1 367888886553 222 356777643
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
-.+.....|+||++.+-.+ -...|.+||+++|+.++...++... +-++++++|.+.|+..+
T Consensus 64 -H~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSGS----- 124 (315)
T KOG0279|consen 64 -HFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSGS----- 124 (315)
T ss_pred -eEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecCC-----
Confidence 4789999999998765533 3568899999999887776655543 67899999999999652
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---ccccccccCCCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (958)
....|-+++. ++....+... ..+..+.|||..
T Consensus 125 --------------------------------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 125 --------------------------------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred --------------------------------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 1233556666 4433344333 567889999986
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.-..+.+.. .++.+.+||+++-+.+. .+. +.......+++||||...+.-
T Consensus 161 ~~p~Ivs~s-----------~DktvKvWnl~~~~l~~--~~~----------gh~~~v~t~~vSpDGslcasG------- 210 (315)
T KOG0279|consen 161 SNPIIVSAS-----------WDKTVKVWNLRNCQLRT--TFI----------GHSGYVNTVTVSPDGSLCASG------- 210 (315)
T ss_pred CCcEEEEcc-----------CCceEEEEccCCcchhh--ccc----------cccccEEEEEECCCCCEEecC-------
Confidence 433333311 34589999999755433 222 222455779999999987761
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+..+.+++||+ .+++.... ......+.+++|||.--+|....... .+|| +++++ ..+.+...
T Consensus 211 ------gkdg~~~LwdL--~~~k~lys-l~a~~~v~sl~fspnrywL~~at~~s---IkIw--dl~~~----~~v~~l~~ 272 (315)
T KOG0279|consen 211 ------GKDGEAMLWDL--NEGKNLYS-LEAFDIVNSLCFSPNRYWLCAATATS---IKIW--DLESK----AVVEELKL 272 (315)
T ss_pred ------CCCceEEEEEc--cCCceeEe-ccCCCeEeeEEecCCceeEeeccCCc---eEEE--eccch----hhhhhccc
Confidence 45668899996 33333222 23445678899999976666553211 4455 44442 11111111
Q ss_pred ccc-----cCCCCCCceEeccCCceEEEEe
Q 002164 504 EDV-----YSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 504 ~~~-----~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.. -+.+....++||+||.+|+...
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 100 0111122378999999988775
No 109
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.2e-10 Score=115.76 Aligned_cols=292 Identities=14% Similarity=0.113 Sum_probs=169.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+|++|++.+. .+....+.....-.+....+|+|++++|+.+.. .+..+...-|.+|.+.|+...+-.......
T Consensus 16 ~gI~v~~ld~~--~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~----~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDTK--TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNE----PGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeCc--ccccchhhhccccCCCceEEECCCCCEEEEEEe----cCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 47899998522 133222221222246888999999998877663 224566677888877787766533222110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
....++.++||++++.+... .+.|-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~AnY~------------------------------------------------~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVANYH------------------------------------------------SGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEEcc------------------------------------------------CceEEEEEcc
Confidence 02367788999999877211 112222222
Q ss_pred -CCeeeecCC-------------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCc
Q 002164 322 -DGTVKEIGP-------------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (958)
Q Consensus 322 -~g~~~~l~~-------------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~ 386 (958)
+|.+..+.. . .......+.|||++|+...... .+|++|+++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCcccccccccc
Confidence 232211110 0 1244567999999999887442 389999998554443332211
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe---------eccc
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---------LDLR 457 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---------~~~~ 457 (958)
.| ..|+|.+.|.|+|+..++..+- .+.|-++..++ .+++.+.|.. ++..
T Consensus 188 ---~~------G~GPRHi~FHpn~k~aY~v~EL------------~stV~v~~y~~-~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---KP------GAGPRHIVFHPNGKYAYLVNEL------------NSTVDVLEYNP-AVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---CC------CCCcceEEEcCCCcEEEEEecc------------CCEEEEEEEcC-CCceEEEeeeeccCccccCCCCc
Confidence 11 1678999999999977765321 33444444312 2455555521 1223
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
...+..|+||++|+.+ ++.-+...+|.++..++ ....+...+.+.....+ |.++++|++|+...+++
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~----F~i~~~g~~Liaa~q~s------ 312 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRD----FNINPSGRFLIAANQKS------ 312 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCcc----ceeCCCCCEEEEEccCC------
Confidence 3458889999987654 55545577888888875 23333222222221111 77899999988876432
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
+.-.+|..|-++|+...+..
T Consensus 313 ------------d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 ------------DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ------------CcEEEEEEcCCCceEEeccc
Confidence 23357777888887766643
No 110
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.39 E-value=1e-11 Score=137.76 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=121.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~a 746 (958)
.|.||++||.+... ..| . .....| +.+|.|++ .|.+|+|.+..... ......+|+.+.
T Consensus 88 gp~lvllHG~~~~~-----------~~w---~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGASI-----------PHW---R-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCCCH-----------HHH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 36789999964211 111 1 123334 45899999 66678887754321 123445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEeccCCCCCC----CCCC------------c------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------ 803 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~----~~~~------------~------ 803 (958)
++.+ ..+++.|+|||+||.+++.++. ++|++++++|++++...... ..+. +
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5432 2358999999999999998887 46899999998886421100 0000 0
Q ss_pred ------cc--ccchh-------hhc---------------------HHHHHh-------cCcccccCCCCCCEEEEeeCC
Q 002164 804 ------QN--EDRTL-------WEA---------------------TSTYVE-------MSPFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 804 ------~~--~~~~~-------~~~---------------------~~~~~~-------~sp~~~~~~~~~P~Lii~G~~ 840 (958)
.. ..... +.+ ...+.. .+....+.++++|+||++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 00 00000 000 000000 011134567889999999999
Q ss_pred CCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 841 DNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 841 D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
|..+| +... .++++.+.+.-...+++++|++||... .+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99988 6542 234555554434579999999999864 67788889999999975
No 111
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.38 E-value=9.3e-12 Score=134.27 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=115.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-----hHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-----FVEQLVACAE 744 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~-----~~~~~~~D~~ 744 (958)
.|.||++||++..+. . +.......+.+.||.|+. .+.+|+|.+..... ......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~-----------~---~~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-----------E---YLENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH-----------H---HHHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642210 0 011222334445999999 55557776644311 1233444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----CC--Ccccc---------cc
Q 002164 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----PF--GFQNE---------DR 808 (958)
Q Consensus 745 ~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~~--~~~~~---------~~ 808 (958)
+.+ +. .+.+++.++||||||.+++.++.+.|++++++|+.+++...... .+ .+... ..
T Consensus 88 ~~~----~~--~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVR----EK--LGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHH----HH--cCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 333 32 23357999999999999999999999999999988765321100 00 00000 00
Q ss_pred hhhhcH---------------------------------HHH---------------HhcCcccccCCCCCCEEEEeeCC
Q 002164 809 TLWEAT---------------------------------STY---------------VEMSPFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 809 ~~~~~~---------------------------------~~~---------------~~~sp~~~~~~~~~P~Lii~G~~ 840 (958)
..+.++ ..+ ...+....+.++++|+|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 000000 000 00011123457889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
|. ++ +.....+.+.+. .+++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 566666665553 357889999999875 4567788888888873
No 112
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.38 E-value=8.3e-11 Score=115.45 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=187.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCC---------chhcccccceeeceeecCCCCCccceeeEeceeEEEccCC---CCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPP---------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d---g~~~ 177 (958)
-+....||+|.++|+..+.++... ...++-|..++-.-.++|.++-...++-++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 355677888888888877663322 3344445566666778888877766666667778888643 3233
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~ 256 (958)
..+.|.+++ +..+.-.|-+|+ +|+. +.|....-+||+++|+..+......+. +-.+..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT---------~SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILT---------GSGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEe---------cCCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 456676644 688888998765 6776 335677788899999887776655543 66888889 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCC-cc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AV 333 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~ 333 (958)
.++.... ...-+++|+ .|..++ +..+ ..
T Consensus 201 tFvSg~c-------------------------------------------------D~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC-------------------------------------------------DKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc-------------------------------------------------ccceeeeeccCcceeEeecccccc
Confidence 8875511 112334555 554444 4444 88
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..+.|-|+|..++..+++ +...+||+.....-.+...+... .++.++.||--|+.|
T Consensus 232 INsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~~~----------~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDSII----------CGITSVAFSKSGRLL 288 (343)
T ss_pred cceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCccc----------CCceeEEEcccccEE
Confidence 9999999999988877744 47889999865444444332221 567899999999876
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+.- .......+||. +.+...-.|..++.++.-+..+|||-.++..+|+.. .+||
T Consensus 289 fag-------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 289 FAG-------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST--LRIW 342 (343)
T ss_pred Eee-------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHh--eeec
Confidence 551 22345788995 788888888999999999999999999999888775 5666
No 113
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.37 E-value=1e-11 Score=130.34 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=115.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.||++||.+... ..| ......| ..+|.|++ .+.+|+|.+...... ++.+.++.
T Consensus 4 ~~~iv~~HG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~d~~G~G~s~~~~~~------~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGMNA-----------EVF----RCLDEEL-SAHFTLHL---VDLPGHGRSRGFGPL------SLADAAEA 58 (245)
T ss_pred CceEEEEcCCCCch-----------hhH----HHHHHhh-ccCeEEEE---ecCCcCccCCCCCCc------CHHHHHHH
Confidence 36789999953211 111 1223333 46799999 556677776432211 22333333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CC--Ccc------------cccc---hhh
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF--GFQ------------NEDR---TLW 811 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~--~~~------------~~~~---~~~ 811 (958)
+.+. . .+++.++|||+||.+++.++.++|++++++|++++....... .+ ... .... ..+
T Consensus 59 ~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T TIGR01738 59 IAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERF 135 (245)
T ss_pred HHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 4333 2 258999999999999999999999999999987654321100 00 000 0000 000
Q ss_pred -------------------hc--------H----H---HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 812 -------------------EA--------T----S---TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 812 -------------------~~--------~----~---~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
.. . . .+...+....+.++++|+|+++|++|..+| +...+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~ 213 (245)
T TIGR01738 136 LALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKL 213 (245)
T ss_pred HHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHh
Confidence 00 0 0 000111123456889999999999999998 7777777665
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
++ .++++++|++||... .++...+.+.+.+|+
T Consensus 214 ~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 214 AP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred CC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 54 468899999999875 466778888888774
No 114
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.37 E-value=8.7e-11 Score=122.43 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=179.6
Q ss_pred HHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 103 REIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 103 ~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
.+....+.+..++|+.||..||+...+ +.+.||+. +| .....+
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl 272 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTL 272 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhh
Confidence 344555678899999999999998865 47889987 44 344444
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
.. +.+.+....|+-+|.+|+-.. -...+.+||..+|+..+........ .-.+.|-.+.+.....
T Consensus 273 ~~--HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~- 336 (524)
T KOG0273|consen 273 GQ--HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS- 336 (524)
T ss_pred hc--cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC-
Confidence 33 335899999999999999843 3667888999899887776555432 2367898666533322
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-cccccccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~ 339 (958)
....|+++-+ ++....+..+ +.+..+.|
T Consensus 337 -------------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 337 -------------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred -------------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 1223555555 4444444445 78889999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
.|-|+.|+..+.+ +++.||... ++....|..+ ...+..+.|||+|...--
T Consensus 368 n~tg~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~n--- 418 (524)
T KOG0273|consen 368 NPTGSLLASCSDD-------------GTLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTSN--- 418 (524)
T ss_pred CCCCceEEEecCC-------------CeeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccCC---
Confidence 9999999988754 488899854 3333333222 134567889999873211
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
. ..+...........|.+||+ ..|.....+.++...+.+++|||+|++|++.+..+. ..+| +...+ +...-
T Consensus 419 ~-~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~--V~iw--s~~~~--~l~~s 489 (524)
T KOG0273|consen 419 P-NMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC--VHIW--STKTG--KLVKS 489 (524)
T ss_pred C-cCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe--eEec--cccch--heeEe
Confidence 0 01111122345667888987 455566667788889999999999999999865443 3444 44442 11111
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
. .....++. ++|+.+|..|....
T Consensus 490 ~-~~~~~Ife------l~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 490 Y-QGTGGIFE------LCWNAAGDKLGACA 512 (524)
T ss_pred e-cCCCeEEE------EEEcCCCCEEEEEe
Confidence 1 11122222 88999998876655
No 115
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.36 E-value=2.2e-11 Score=125.20 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=165.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC--CeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~~ 266 (958)
..+....||+||+.|+..+ -+|...|| +.......+...+.... +..+.|.|. +..|+..+.+
T Consensus 176 rPis~~~fS~ds~~laT~s-------wsG~~kvW--~~~~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGS-------WSGLVKVW--SVPQCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred CcceeeEeecCCCeEEEee-------cCCceeEe--ecCCcceeEEEeccccc----eeeEEEccCCCccceeeeccC--
Confidence 3677889999999999876 23455555 44455555544444433 778999997 4566654211
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcE
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
+.-.||.++-.-....|... ..+..++|.|+|++
T Consensus 241 ---------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 241 ---------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred ---------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 22335544433345556555 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+..+ ++..-.+||+.++..-.+- .++..++.+++|.|||..++- |
T Consensus 276 L~Tas-------------fD~tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL~~t------G--- 321 (459)
T KOG0272|consen 276 LGTAS-------------FDSTWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSLAAT------G--- 321 (459)
T ss_pred eeecc-------------cccchhhcccccchhhHhh------------cccccccceeEecCCCceeec------c---
Confidence 99887 3457789999866432211 133467789999999986554 1
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+.+..-.+||+ ..|...-.|..+-..+..+.|||+|-.|+..+.+++ .+||.+..... .-+...+...
T Consensus 322 ----GlD~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt--~kVWDLR~r~~----ly~ipAH~nl 389 (459)
T KOG0272|consen 322 ----GLDSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT--CKVWDLRMRSE----LYTIPAHSNL 389 (459)
T ss_pred ----Cccchhheeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCc--EEEeeeccccc----ceecccccch
Confidence 22223356775 456666666666677889999999999988876665 67887764431 1122222222
Q ss_pred ccCCCCCCceEecc-CCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecC
Q 002164 506 VYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (958)
Q Consensus 506 ~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (958)
+.. +.|+| -|.+|+....+ ..+.+|...+....+...+...+ +.
T Consensus 390 VS~------Vk~~p~~g~fL~TasyD---------------------~t~kiWs~~~~~~~ksLaGHe~k----V~---- 434 (459)
T KOG0272|consen 390 VSQ------VKYSPQEGYFLVTASYD---------------------NTVKIWSTRTWSPLKSLAGHEGK----VI---- 434 (459)
T ss_pred hhh------eEecccCCeEEEEcccC---------------------cceeeecCCCcccchhhcCCccc----eE----
Confidence 222 78898 55556554421 23667776665544333333221 11
Q ss_pred CCccccccccCCEEEEE
Q 002164 585 DQTEGDLYLNQLKILTS 601 (958)
Q Consensus 585 ~~~~~~~s~dg~~l~~~ 601 (958)
.+++|+|+..++..
T Consensus 435 ---s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 435 ---SLDISPDSQAIATS 448 (459)
T ss_pred ---EEEeccCCceEEEe
Confidence 24678888766543
No 116
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.35 E-value=6.5e-11 Score=127.09 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
..++|.|++ .|.+|+|.+..+... .....++.+.+..++++ .+.+++.++||||||.+++.++.++|++++++|
T Consensus 57 l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGEFVDH--LGLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHH--hCCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 356799999 566688877543221 12244555555555554 234689999999999999999999999999999
Q ss_pred EeccCCCCCCC----CCC--ccc---cc---------ch--------hhh--cHHHHH-----------------hc---
Q 002164 789 ARSGAYNRTLT----PFG--FQN---ED---------RT--------LWE--ATSTYV-----------------EM--- 820 (958)
Q Consensus 789 ~~~~~~~~~~~----~~~--~~~---~~---------~~--------~~~--~~~~~~-----------------~~--- 820 (958)
+.++..-.... .+. +.. .. .. ... ....+. ..
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T PRK03204 131 LGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAA 210 (286)
T ss_pred EECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchh
Confidence 87654210000 000 000 00 00 000 000000 00
Q ss_pred Cc-ccc----cCC--CCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002164 821 SP-FMS----ANK--LKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (958)
Q Consensus 821 sp-~~~----~~~--~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 892 (958)
.+ +.. +.+ +++|+|+++|++|..++ +.. .+++.+.+.. .+++++|++||... .+..+.+.+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~ 283 (286)
T PRK03204 211 RPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPRLRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIE 283 (286)
T ss_pred hHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHHHHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHH
Confidence 00 000 111 27999999999999875 443 4555555543 58889999999974 5677788888888
Q ss_pred HH
Q 002164 893 WL 894 (958)
Q Consensus 893 fl 894 (958)
||
T Consensus 284 ~~ 285 (286)
T PRK03204 284 RF 285 (286)
T ss_pred hc
Confidence 86
No 117
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.35 E-value=1.1e-10 Score=129.42 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc----
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---- 713 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---- 713 (958)
.+.+++.+. -|.+...++|+|++++ .+ ++|+|+++||..+... .........+.++|.
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~~~--------------~~~~~~ld~li~~g~i~P~ 242 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWAES--------------MPVWPALDSLTHRGQLPPA 242 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhhhc--------------CCHHHHHHHHHHcCCCCce
Confidence 455666553 4677888999999886 22 5999999999642110 001223445666773
Q ss_pred EEEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 714 AILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
+++.++..+......... ...+...+.+ +.+-++.++.. .|+++.+|+|.||||+.|++++.++|++|.+++++
T Consensus 243 ivV~id~~~~~~R~~el~~~~~f~~~l~~---eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~ 319 (411)
T PRK10439 243 VYLLIDAIDTTHRSQELPCNADFWLAVQQ---ELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQ 319 (411)
T ss_pred EEEEECCCCcccccccCCchHHHHHHHHH---HHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEe
Confidence 345544422211111111 1222223333 33444555532 57889999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 002164 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (958)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (958)
+|.+-+... .....-| -.+.+... ....-+..++|.+|..|..+ ....+++++.|+++|.++++.++
T Consensus 320 Sgs~ww~~~-----~~~~~~~-l~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~~ 386 (411)
T PRK10439 320 SGSFWWPHR-----GGQQEGV-LLEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQV 386 (411)
T ss_pred ccceecCCc-----cCCchhH-HHHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEEC
Confidence 986421100 0000000 01111110 01112345888899998654 57789999999999999999999
Q ss_pred CCCCccC
Q 002164 871 PFESHGY 877 (958)
Q Consensus 871 p~~~H~~ 877 (958)
+| ||..
T Consensus 387 ~G-GHd~ 392 (411)
T PRK10439 387 DG-GHDA 392 (411)
T ss_pred CC-CcCH
Confidence 98 7975
No 118
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=3.8e-11 Score=119.99 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=139.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCC-
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIG- 725 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G- 725 (958)
+|...++++|.|++.+. ..|+||++||+... .+++...+ +| - .+| ..||.|+.++..+..-
T Consensus 43 ~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~s--g~-------d-~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 43 NGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHGT--GW-------D-ALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred CCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhccc--ch-------h-hhhcccCcEEECcCccccccC
Confidence 67889999999998642 25999999997432 22222211 12 2 344 4799999975544322
Q ss_pred ---CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CCCCC
Q 002164 726 ---EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT 799 (958)
Q Consensus 726 ---~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~ 799 (958)
.+..+.+. .....++..+.+.++.|..+.-||+.||+|.|.|.||.|+..++..+|++|.++..+++.. +..-.
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~ 185 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVAC 185 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCccc
Confidence 22221221 3344678888899999999999999999999999999999999999999999999998864 11000
Q ss_pred CCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC------------------
Q 002164 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH------------------ 861 (958)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~------------------ 861 (958)
....+..-...-...+|......=..| |-+|..|..|+ .....+..+++..-
T Consensus 186 ------~~~rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 186 ------TPPRPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred ------CCCCchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 000000000000111222111111233 77777777765 55555555555321
Q ss_pred -----CCcEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHhh
Q 002164 862 -----GALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (958)
Q Consensus 862 -----g~~~~~~~~p~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (958)
+.++++..+.+.||.+..... .....++|.+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 236888899999998753111 1235678999998874
No 119
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.35 E-value=2.3e-11 Score=123.92 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=139.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.++..||..+...+..++. ....|+||.+||-. |+- .+.+.......+.++||.|+. +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s--~s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSS--NSPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCC--cCHHHHHHHHHHHhcCCeEEE---Ee
Confidence 5566677666555555422 11269999999942 221 112233455667789999999 66
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH-HHHHHHHhCC-CceeEEEEeccCCCCCC
Q 002164 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF-MTANLLAHAP-HLFCCGIARSGAYNRTL 798 (958)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~-~a~~~a~~~p-~~~~a~v~~~~~~~~~~ 798 (958)
.+|.+.+.. +.-+.....+|+..++++++++.. +.++..+|.|+||. ++.+++-..- -.+.|++.++-.+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 667665532 233344567999999999999643 46899999999995 5555544321 13455555554333110
Q ss_pred ------CCCC----------------------c----ccc-------cchhhh--------------cHHHHHhcCcccc
Q 002164 799 ------TPFG----------------------F----QNE-------DRTLWE--------------ATSTYVEMSPFMS 825 (958)
Q Consensus 799 ------~~~~----------------------~----~~~-------~~~~~~--------------~~~~~~~~sp~~~ 825 (958)
..+. + ... .++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 0 000 011221 2366788899999
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc-C-CCcc-cHH-HHHHHHHHHHHHhhc
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG-Y-AARE-SIM-HVLWETDRWLQKYCV 899 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~-~-~~~~-~~~-~~~~~i~~fl~~~l~ 899 (958)
+.+|.+|+||||..+|+.++ +...-+. ..+ ....+.+.+-+.+||. + .+.. +.. -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~iP~~-~~~--~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVIPKL-QEM--LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhCCcc-hhc--CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 4322121 111 3446888888989996 2 2122 222 234568999998864
No 120
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.34 E-value=2e-10 Score=119.20 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=130.1
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
.+.+++..|. +.++++.|.+ ..+.|+||++||.... .+.+.......+..|+++||.|+.
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~-----~~~~~~VlllHG~g~~-----------~~~~~~~~~~la~~La~~Gy~Vl~--- 61 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVA-----VGPRGVVIYLPPFAEE-----------MNKSRRMVALQARAFAAGGFGVLQ--- 61 (266)
T ss_pred CEEecCCCCc-EEEEEecCCC-----CCCceEEEEECCCccc-----------ccchhHHHHHHHHHHHHCCCEEEE---
Confidence 3556665554 6677777764 2247999999994210 011111111345678889999999
Q ss_pred CCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 721 TPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 721 ~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+|.+|+|.+... ........+|+.++++++.+++ .++|+|+|+||||.+++.++.++|+.++++|+.+|+.+...
T Consensus 62 ~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~ 138 (266)
T TIGR03101 62 IDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQ 138 (266)
T ss_pred ECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHH
Confidence 556677776432 2234567899999999998874 35899999999999999999999999999999998765221
Q ss_pred CC-----CC-----cccccc----hhh------------------hcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 799 TP-----FG-----FQNEDR----TLW------------------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 799 ~~-----~~-----~~~~~~----~~~------------------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
.- .. ...... ..- +....+...+....... ..++|++.-..+.--+
T Consensus 139 ~l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~- 216 (266)
T TIGR03101 139 QLQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGAT- 216 (266)
T ss_pred HHHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCC-
Confidence 00 00 000000 000 00011222222111111 4577887764332211
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
......++.+.+++.|+.++...|++.
T Consensus 217 ~~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 217 LSPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CCHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 145678899999999999999999986
No 121
>PRK07581 hypothetical protein; Validated
Probab=99.34 E-value=2.6e-11 Score=133.94 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=112.6
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchh----hH------HHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHH
Q 002164 707 LWLARGFAILGGPTTPIIGEGDEEANDR----FV------EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (958)
Q Consensus 707 ~la~~G~~vl~~~~~~~~G~G~~~~~~~----~~------~~~~~D~~~av~~l~~~~~~d~~~-i~l~G~S~GG~~a~~ 775 (958)
.|...+|.|++ .|.+|+|.+..+.. +. ....+|+.+.+..+.+.-.+ ++ +.|+||||||++|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi--~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFGI--ERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhCC--CceEEEEEeCHHHHHHHH
Confidence 34567899999 56668887753321 10 11234554434445443123 57 478999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCC----------------CCC---Ccc--------------------cc--cc------
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQ--------------------NE--DR------ 808 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~----------------~~~---~~~--------------------~~--~~------ 808 (958)
++.++|++++++|++++...... ..+ .+. .. ..
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 000 00 00
Q ss_pred ------h----hhh------cHHH-------HHhc----------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 809 ------T----LWE------ATST-------YVEM----------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 809 ------~----~~~------~~~~-------~~~~----------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
. .+. .+.. +... +....+.++++|+|+++|++|..+| +..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 000 0000 0000 1112345688999999999999998 88887777
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+.. .+++++++ +||... .+....+...+.+||.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 66643 58889998 899763 55667788889999998863
No 122
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=1.1e-09 Score=120.70 Aligned_cols=294 Identities=11% Similarity=0.112 Sum_probs=176.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|+--|.||||.... . +.|-||+... +.-.++...+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 56678888899999998763 0 2566666532 112222111223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...++||||+.||.. .+...|.+||...|-...-...+... +..+.|+.+|+.|+.++-+
T Consensus 352 ~i~~l~YSpDgq~iaTG---------~eDgKVKvWn~~SgfC~vTFteHts~----Vt~v~f~~~g~~llssSLD----- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATG---------AEDGKVKVWNTQSGFCFVTFTEHTSG----VTAVQFTARGNVLLSSSLD----- 413 (893)
T ss_pred ceeeEEECCCCcEEEec---------cCCCcEEEEeccCceEEEEeccCCCc----eEEEEEEecCCEEEEeecC-----
Confidence 68889999999999984 44678888998887765333323322 7789999999999977211
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDGk~ 345 (958)
+.+-.+|+ .+ .-+.++.+ .....++..|-|..
T Consensus 414 --------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 414 --------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred --------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 22334444 33 34445444 44556677777886
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+...+.+ .-+|++|+++++....+ ..++ +.+..+.|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 6555432 23899999997765433 3222 445678999999976652
Q ss_pred cccccccCCeEEEEeCCCCCC-CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc-------------CCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-------------PGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~-------------~~~ 490 (958)
+-+..|.+|++ .+. ++...+ ....++..++|+|||+.|+.+.-.+. ..+|.+. +.+
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq--Itf~d~~~~~q~~~IdgrkD~~~ 566 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ--ITFFDIKEAVQVGSIDGRKDLSG 566 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce--EEEEEhhhceeeccccchhhccc
Confidence 23446788886 333 233333 33455778999999999998864432 3333322 122
Q ss_pred CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
+....-.++....... ..-..+.+|+||+.|+.+.. ...+++|++.++-..+.+.
T Consensus 567 gR~~~D~~ta~~sa~~---K~Ftti~ySaDG~~IlAgG~---------------------sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 567 GRKETDRITAENSAKG---KTFTTICYSADGKCILAGGE---------------------SNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred cccccceeehhhcccC---CceEEEEEcCCCCEEEecCC---------------------cccEEEEECchhheeeeEE
Confidence 1111111111111100 00112678999998876642 2368999988876554443
No 123
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.33 E-value=3.7e-11 Score=135.04 Aligned_cols=192 Identities=16% Similarity=0.112 Sum_probs=114.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (958)
.|.||++||.+.. ...| ...... ..++|.|++ ++.+|+|.+... .........++.+
T Consensus 131 ~~~vl~~HG~~~~-----------~~~~----~~~~~~-l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~-- 189 (371)
T PRK14875 131 GTPVVLIHGFGGD-----------LNNW----LFNHAA-LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLA-- 189 (371)
T ss_pred CCeEEEECCCCCc-----------cchH----HHHHHH-HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHH--
Confidence 5779999995311 1111 112223 345699999 566677766322 2223333433333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCc----ccc-----------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF----QNE----------------- 806 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~----~~~----------------- 806 (958)
+.+. .+.+++.++|||+||.+++.++.++|++++++|+.++..........+ ...
T Consensus 190 --~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
T PRK14875 190 --FLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADP 265 (371)
T ss_pred --HHHh--cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcCh
Confidence 3332 455689999999999999999999998999999988753211000000 000
Q ss_pred c--c-hh----hh-----c-HHH---HH---------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 807 D--R-TL----WE-----A-TST---YV---------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 807 ~--~-~~----~~-----~-~~~---~~---------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
. . .. +. . ... +. ..+....+.++++|+|++||++|..+| +.++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~~----- 338 (371)
T PRK14875 266 ALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLPD----- 338 (371)
T ss_pred hhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccC--HHHHhhccC-----
Confidence 0 0 00 00 0 000 00 011122456789999999999999998 776654432
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 862 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+++.++|++||... .++...+.+.|.+||.+
T Consensus 339 --~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 339 --GVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred --CCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 368889999999874 45566677777777754
No 124
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.32 E-value=7.5e-10 Score=118.46 Aligned_cols=245 Identities=16% Similarity=0.136 Sum_probs=153.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+..+.|+|||+.|++... ...|++++..+++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46889999999999998542 557888888776543332222221 55889999998888761
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....|+++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1245777777 54 34444433 56788999999877
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++.... .+.+.+|++..+. ...+..+ ...+..+.|+|+++.++..
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEeccC-------------CCcEEEEEEcCcCCEEEEE--------
Confidence 666551 2489999998443 3333211 1345788999997766552
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
...+.+++|++ ..+.....+......+..+.|+|+++.|++.... ..+.+++...+ +..........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD----GTIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCC----CcEEEEECCCC--ceecchhhcCC
Confidence 22557888985 2233344445455567889999999988887652 23556666543 22222212222
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+.. +.|+|++..++.... ...|++||+.+++......
T Consensus 221 ~i~~------~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ceEE------EEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEcc
Confidence 2222 778999776655431 1258999998766554443
No 125
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=1.3e-09 Score=120.05 Aligned_cols=227 Identities=17% Similarity=0.170 Sum_probs=147.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc-CCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF-QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.+...+|+--|+||||... ...+|-+|+-.+.. .-+- ...... +..++.||||++|+...
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEs-YVlKQQgH~~~----i~~l~YSpDgq~iaTG~------ 369 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSES-YVLKQQGHSDR----ITSLAYSPDGQLIATGA------ 369 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccc-eeeeccccccc----eeeEEECCCCcEEEecc------
Confidence 6788899999999999542 24455555544422 1111 111111 66899999999999661
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
..+.+-++|. .| -...++++ ..++.+.|+.+|+.
T Consensus 370 -------------------------------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 370 -------------------------------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred -------------------------------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 1133556666 55 45566666 78899999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+-.+. ++++..||+. ....|.++.... + ...-++-.|-|..+..- .
T Consensus 407 llssSL-------------DGtVRAwDlkRYrNfRTft~P~p-----~-------QfscvavD~sGelV~AG--~----- 454 (893)
T KOG0291|consen 407 LLSSSL-------------DGTVRAWDLKRYRNFRTFTSPEP-----I-------QFSCVAVDPSGELVCAG--A----- 454 (893)
T ss_pred EEEeec-------------CCeEEeeeecccceeeeecCCCc-----e-------eeeEEEEcCCCCEEEee--c-----
Confidence 988874 4589999998 445555554211 1 11234445556533320 0
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
-..-.|++|++ ..|.....|..+++.+..+.|+|+|..|+..+|+++ .++|.+=-..++.++..+. .
T Consensus 455 -----~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~----s 521 (893)
T KOG0291|consen 455 -----QDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR----S 521 (893)
T ss_pred -----cceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----c
Confidence 11225899996 345455566888999999999999999999999988 7888765554333332222 1
Q ss_pred cccCCCCCCceEeccCCceEEEEee
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++.. ++|+|||+.|+....
T Consensus 522 dvl~------vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 522 DVLA------VSFRPDGKELAVATL 540 (893)
T ss_pred ceeE------EEEcCCCCeEEEEEe
Confidence 2222 889999999998874
No 126
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.31 E-value=3.7e-12 Score=131.80 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=104.0
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.+..| ++||.|++ .+.+|+|.+.... .......+|+.++++.+ ..+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45556 58999999 5666788775532 22344555555554443 22689999999999999999999
Q ss_pred CCCceeEEEEeccCCCCCCCC--C----Cccc-------ccc----h---hhhcH-----------HH--------HHhc
Q 002164 780 APHLFCCGIARSGAYNRTLTP--F----GFQN-------EDR----T---LWEAT-----------ST--------YVEM 820 (958)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~--~----~~~~-------~~~----~---~~~~~-----------~~--------~~~~ 820 (958)
+|++++++|+.++........ . .+.. ... . .+... .. +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 000 0 00000 00 0122
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+....+.++++|+++++|++|..++ ....+++.+.+. .++++++|++||.+.
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 3334567789999999999999987 666666665543 479999999999863
No 127
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=9.7e-10 Score=121.08 Aligned_cols=291 Identities=14% Similarity=0.180 Sum_probs=154.9
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.|+++.+..+. +....+.............++||++.|+.+... ....+.-..|.++.++|+...+.......
T Consensus 14 gI~~~~~d~~~--g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-- 86 (345)
T PF10282_consen 14 GIYVFRFDEET--GTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG-- 86 (345)
T ss_dssp EEEEEEEETTT--TEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS--
T ss_pred cEEEEEEcCCC--CCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC--
Confidence 68888883322 443333322233467888999999877766421 01334445566666656766554332110
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
.....++.+|||+.|+.+- |..+.+.++++
T Consensus 87 ~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~~ 118 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLDD 118 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEECT
T ss_pred CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEccC
Confidence 0023567789999999871 12344555555
Q ss_pred CCeeeec---C-----------CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccC
Q 002164 322 DGTVKEI---G-----------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDL 384 (958)
Q Consensus 322 ~g~~~~l---~-----------~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~ 384 (958)
+|..... . +. .....+.++|||+++++.... ...|++++++... .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEeecc
Confidence 3533222 1 11 334568899999999877643 2378999887443 3321111
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-----cc---
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DL--- 456 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~--- 456 (958)
... ...+++.+.|+|||+.+++.. ...+.|.+++..+ ..+..+.+... ..
T Consensus 187 ~~~---------~G~GPRh~~f~pdg~~~Yv~~------------e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 187 KVP---------PGSGPRHLAFSPDGKYAYVVN------------ELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp ECS---------TTSSEEEEEE-TTSSEEEEEE------------TTTTEEEEEEEET-TTTEEEEEEEEESCETTSCSS
T ss_pred ccc---------cCCCCcEEEEcCCcCEEEEec------------CCCCcEEEEeecc-cCCceeEEEEeeecccccccc
Confidence 100 115778999999999887742 2244566666411 23343333211 11
Q ss_pred -ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 457 -RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 457 -~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
....+.+||||++|+.+ ++..+...+|.++..++ ....+.......... -.+.++|||++|+......
T Consensus 245 ~~~~~i~ispdg~~lyvs-nr~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~P----r~~~~s~~g~~l~Va~~~s---- 313 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVS-NRGSNSISVFDLDPATG--TLTLVQTVPTGGKFP----RHFAFSPDGRYLYVANQDS---- 313 (345)
T ss_dssp SSEEEEEE-TTSSEEEEE-ECTTTEEEEEEECTTTT--TEEEEEEEEESSSSE----EEEEE-TTSSEEEEEETTT----
T ss_pred CCceeEEEecCCCEEEEE-eccCCEEEEEEEecCCC--ceEEEEEEeCCCCCc----cEEEEeCCCCEEEEEecCC----
Confidence 23458899999987765 54444456666655543 333322111111000 0177899999988776321
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+.-.++.+|.++|+...+.
T Consensus 314 --------------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 --------------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp --------------TEEEEEEEETTTTEEEEEE
T ss_pred --------------CeEEEEEEeCCCCcEEEec
Confidence 2224556677788766554
No 128
>PRK06489 hypothetical protein; Provisional
Probab=99.31 E-value=7.1e-11 Score=131.28 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=107.0
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhh-----HHHHHHHHHH-HHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCC
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRF-----VEQLVACAEA-AVEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~-----~~~~~~D~~~-av~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~ 782 (958)
+++|.|++ .|.+|+|.+..+... ....++++.+ .+..+.++-.+ +++. |+||||||.+|+.++.++|+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~ 177 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGV--KHLRLILGTSMGGMHAWMWGEKYPD 177 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCC--CceeEEEEECHHHHHHHHHHHhCch
Confidence 57899999 566688877543210 0112223322 22333333222 4664 89999999999999999999
Q ss_pred ceeEEEEeccCCCCC------C-----------CCC---Cccccc---c--------------------hhh-hc-----
Q 002164 783 LFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA----- 813 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~------~-----------~~~---~~~~~~---~--------------------~~~-~~----- 813 (958)
+++++|++++..... . ..+ .+.... . ... ..
T Consensus 178 ~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T PRK06489 178 FMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLV 257 (360)
T ss_pred hhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHH
Confidence 999999887532100 0 000 000000 0 000 00
Q ss_pred -----------HHHHH-------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHH--HHHHHHHHhCCCcEEEEEeCCC
Q 002164 814 -----------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 814 -----------~~~~~-------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
...+. ..+....+.++++|+|+++|++|..+| +..+ +++.+.+.. .+++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i~~a 331 (360)
T PRK06489 258 DERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLIPAS 331 (360)
T ss_pred HHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEECCC
Confidence 00010 112223456789999999999999988 7765 566666544 589999996
Q ss_pred ----CccCCCcccHHHHHHHHHHHHHHh
Q 002164 874 ----SHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 874 ----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
||... +....+.+.+.+||...
T Consensus 332 ~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 332 PETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 99874 57888889999999765
No 129
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.31 E-value=5.2e-11 Score=126.08 Aligned_cols=190 Identities=11% Similarity=0.017 Sum_probs=114.9
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l 750 (958)
|.||++||.+.... .| ......| +..|.|++ .|.+|+|.+.....+ ..+ +.++.+
T Consensus 14 ~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNAE-----------VW----RCIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAV 68 (256)
T ss_pred CeEEEECCCCCChh-----------HH----HHHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHH---HHHHHH
Confidence 46899999542211 11 1223344 45699999 666788877543221 112 222333
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---CCCc-----------ccccchh---h--
Q 002164 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF-----------QNEDRTL---W-- 811 (958)
Q Consensus 751 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~-----------~~~~~~~---~-- 811 (958)
.+. ..+++.++||||||++++.+|.++|++++++|++++....... .... ....... +
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 333 2368999999999999999999999999999988763211000 0000 0000000 0
Q ss_pred ----------hcH----------------------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 812 ----------EAT----------------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 812 ----------~~~----------------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
... ..+...+....+.++++|+|+++|++|..+| .+.+..+.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~ 223 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP 223 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCC
Confidence 000 0011112223456788999999999999988 776665555544
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
..+++++|++||... .++...+.+.+.+|-.
T Consensus 224 ----~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 224 ----HSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ----CCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 358999999999874 5677777777777743
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-09 Score=107.04 Aligned_cols=253 Identities=15% Similarity=0.168 Sum_probs=163.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....||+||..++.+.. ...|.++|...|+..+.......+ +....|......+.+++.
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sSt----- 76 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSST----- 76 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEccC-----
Confidence 46888999999999998653 447888899888887776666543 667788855555554411
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~ 345 (958)
. ....|-.+++ +.+..+...+ ..+.+++.||-+..
T Consensus 77 ---------------------------------k---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 77 ---------------------------------K---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------------------------C---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 0 1134667788 6665555555 77889999998877
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++-.+.+ .+|.+||+...+.+-+.... +..-++|+|.|=.+|..
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~GLifA~~--------- 158 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEGLIFALA--------- 158 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCCcEEEEe---------
Confidence 7766643 48999999855444333321 22346788988544442
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEe---eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
.+.+.|.++|+-..+.+.-+...- .......+.||||||.|+.+.+. +.++++|.=.|+ ....+...
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~--~~~tfs~~ 228 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGT--VKSTFSGY 228 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCc--EeeeEeec
Confidence 233467777752333333333321 23344678999999999998644 458888876652 23322222
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
...... .....|+|||++|+....+ .+|.+|++++|+....+.+.
T Consensus 229 ~~~~~~---~~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGNL---PLSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCCc---ceeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 211100 0125799999998877621 26999999999988887764
No 131
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.28 E-value=2.3e-11 Score=116.11 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=122.6
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCc---ccchhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.+..+|..||.|+.||++..--+..+ .....| -+....|+..+++||+.++ +..+|+++|.+|||..+..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 45567889999999888533111111 111222 2345889999999999775 4579999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
+.+..| .|.++++.-|.+- + ..-+.++++|+|++.|+.|..+| +..-.++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 988886 7888888776421 1 22345678999999999999998 88888888
Q ss_pred HHHHhCC-CcEEEEEeCCCCccCCC-------c---ccHHHHHHHHHHHHHHhh
Q 002164 856 NALKGHG-ALCRLVILPFESHGYAA-------R---ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 856 ~~l~~~g-~~~~~~~~p~~~H~~~~-------~---~~~~~~~~~i~~fl~~~l 898 (958)
++++... ...++.+|+|.+|++.. + ...++.++.++.||.+|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 8888753 23579999999999863 1 234678889999999986
No 132
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.28 E-value=1.4e-10 Score=133.28 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----------Cc--------e-eeccCCCCccccccccce
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----------GK--------A-RPLFQSPDIYLNAIFDNF 249 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----------g~--------~-~~lt~~~~~~~~~~~~~~ 249 (958)
+.+..++|||||+++|+.++ ...|.+|..+. |. . ..+..++. .+..+
T Consensus 70 ~sv~CVR~S~dG~~lAsGSD---------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv 135 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSD---------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDV 135 (942)
T ss_pred CceeEEEECCCCCeEeeccC---------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----cccee
Confidence 47888999999999999542 34444444331 11 1 11212222 26789
Q ss_pred EEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-e
Q 002164 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-E 327 (958)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~ 327 (958)
+|+||+.+|+... -...+.+++. +.+.. .
T Consensus 136 ~Wsp~~~~lvS~s-------------------------------------------------~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 136 NWSPDDSLLVSVS-------------------------------------------------LDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCCCccEEEEec-------------------------------------------------ccceEEEEccccceeeee
Confidence 9999999999762 1133666666 55433 3
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceee
Q 002164 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
+-.. +.+-.+.|.|=||+++..+.+ ..+-+|+... +-.+.++. |..+. ......+.++
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdD-------------rtikvwrt~dw~i~k~It~-pf~~~------~~~T~f~RlS 226 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDD-------------RTLKVWRTSDWGIEKSITK-PFEES------PLTTFFLRLS 226 (942)
T ss_pred eecccccccceEECCccCeeeeecCC-------------ceEEEEEcccceeeEeecc-chhhC------CCcceeeecc
Confidence 3333 677888999999999999855 3888998654 33344443 22211 1113457799
Q ss_pred eecCCCCceEE
Q 002164 406 WRSDKPSTLYW 416 (958)
Q Consensus 406 ~spDG~~l~~~ 416 (958)
|||||+.|+..
T Consensus 227 WSPDG~~las~ 237 (942)
T KOG0973|consen 227 WSPDGHHLASP 237 (942)
T ss_pred cCCCcCeecch
Confidence 99999998863
No 133
>PLN02578 hydrolase
Probab=99.28 E-value=1.5e-10 Score=128.33 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=106.5
Q ss_pred HCCcEEEEcCCCCCCCCCCcccch-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEAND-RF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~-~~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
+++|.|++ .|.+|+|.+.... .+ .....+|+.+.++.+. .+++.++|||+||++++.+|.++|++++++
T Consensus 110 ~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 110 AKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred hcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 46799999 5556777765432 11 2233445555554432 358999999999999999999999999999
Q ss_pred EEeccCCCCCCCC------------CC---ccccc----------------c----------hhhhc-------------
Q 002164 788 IARSGAYNRTLTP------------FG---FQNED----------------R----------TLWEA------------- 813 (958)
Q Consensus 788 v~~~~~~~~~~~~------------~~---~~~~~----------------~----------~~~~~------------- 813 (958)
|++++........ +. +.... . ..+.+
T Consensus 181 vLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (354)
T PLN02578 181 ALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESIT 260 (354)
T ss_pred EEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHHH
Confidence 9887532110000 00 00000 0 00000
Q ss_pred --------HHHHH-----------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 814 --------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 814 --------~~~~~-----------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.+.+. ..+....+.++++|+|+++|++|..+| ...+.++.+.+.. .+++++ ++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~G 333 (354)
T PLN02578 261 EPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QAG 333 (354)
T ss_pred hcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CCC
Confidence 00000 001122356789999999999999998 8887777666543 477777 479
Q ss_pred ccCCCcccHHHHHHHHHHHHH
Q 002164 875 HGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~ 895 (958)
|... .+...++.+.|.+|+.
T Consensus 334 H~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 334 HCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCcc-ccCHHHHHHHHHHHHh
Confidence 9874 6677888899999985
No 134
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.27 E-value=3.6e-11 Score=112.51 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=141.1
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC----
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG---- 725 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G---- 725 (958)
-.+.--+|+|+.+..++ +.|++.++-|-. ..+..|.... .+.+.-..+|++|+.+|.- -+|
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~Ks-g~qq~As~hgl~vV~PDTS-PRG~~v~ 90 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEKS-GFQQQASKHGLAVVAPDTS-PRGVEVA 90 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhhh-hHHHhHhhcCeEEECCCCC-CCccccC
Confidence 45677789998876555 499999999843 2222232111 1222334589999996652 222
Q ss_pred -CCCc--------cc----ch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 726 -EGDE--------EA----ND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 726 -~G~~--------~~----~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
..++ +. .+ .++...++++...++- ..-.+|+.+++|+||||||.-|+.++.+.|.+++.
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~--~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykS 168 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNS--ANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKS 168 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhcc--ccccccchhcceeccccCCCceEEEEEcCcccccc
Confidence 1111 10 01 1122333333333221 23358999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC---CCCCEEEEeeCCCCCCCCChHH--HHHHHHHHHhC
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---LKKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGH 861 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---~~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~~ 861 (958)
+.+++|++|....+|+-....+.+.++...|..+++...+++ ...-+||-.|..|...+ ++ .+.+.++.+..
T Consensus 169 vSAFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~~ 245 (283)
T KOG3101|consen 169 VSAFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKAT 245 (283)
T ss_pred eeccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhcc
Confidence 999999999999999876666677777888888877555444 44568999999998753 33 35566666643
Q ss_pred -CCcEEEEEeCCCCccCC
Q 002164 862 -GALCRLVILPFESHGYA 878 (958)
Q Consensus 862 -g~~~~~~~~p~~~H~~~ 878 (958)
..++.+...+|-+|.+.
T Consensus 246 ~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 246 WQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred ccccEEEEeecCCCccee
Confidence 36788888999999864
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.5e-10 Score=118.77 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=158.3
Q ss_pred eceeEEEccCCCCCCceeeeccCC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
..+.|+.+ ||...+ .|+.+- ....+....|+|+|+..+|++. ...-+|.||+.+++..++....+..
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 47788888 554332 333221 2236788899999996666542 2557899999998887775433221
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+..+..|+|+++|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 12367889999999988761 2356778776
Q ss_pred -CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccc
Q 002164 322 -DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 322 -~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~ 398 (958)
+++.- .+...+.+..+.||.||+.|+.... +++||+||+..... ++..+ .+.
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-------------~GeV~v~nl~~~~~~~rf~D-~G~----------- 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGG-------------TGEVYVWNLRQNSCLHRFVD-DGS----------- 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcC-------------CceEEEEecCCcceEEEEee-cCc-----------
Confidence 66421 2222277889999999999988762 35999999985533 22222 110
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCC-CCCCCCceEEE---eeccccCceeeecCCceEEEEE
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE-PVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (958)
....++..|++|.+++.- +..+.|-+|+.. -..+..++.+. ..-..+.++.|++|++.|+..+
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 123568889999977662 445566666631 12345555553 2334577899999999999888
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+..+|..+. +. .+....+..... -.....+.|||.|.+++++.
T Consensus 455 ~~~knalrLVHvP--S~----TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVP--SC----TVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecc--ce----eeeccCCCCCCc-ccceEEEEecCCCceEEeec
Confidence 7655434444443 31 111111110000 00011278999999999875
No 136
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.27 E-value=6e-10 Score=108.95 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=149.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.+|+||++.+..+.+ ..+.+||+.+ | ...+++.+++ .
T Consensus 65 ~v~dv~~s~dg~~alS~swD---------------------------------~~lrlWDl~~-g--~~t~~f~GH~--~ 106 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWD---------------------------------GTLRLWDLAT-G--ESTRRFVGHT--K 106 (315)
T ss_pred EecceEEccCCceEEecccc---------------------------------ceEEEEEecC-C--cEEEEEEecC--C
Confidence 57788999999988777765 5789999965 2 3456666644 5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC--eEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~~~~~~~ 267 (958)
.+...++|||.++|...+ ....|-+|++.|+-...+....+..+ +.-+.|+|.- -+|+...
T Consensus 107 dVlsva~s~dn~qivSGS---------rDkTiklwnt~g~ck~t~~~~~~~~W---VscvrfsP~~~~p~Ivs~s----- 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGS---------RDKTIKLWNTLGVCKYTIHEDSHREW---VSCVRFSPNESNPIIVSAS----- 169 (315)
T ss_pred ceEEEEecCCCceeecCC---------CcceeeeeeecccEEEEEecCCCcCc---EEEEEEcCCCCCcEEEEcc-----
Confidence 789999999999998844 36688888988876666655542222 7789999985 3333220
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk 344 (958)
....+-+.|+ +-+.+.-..+ +.++.+.+||||.
T Consensus 170 --------------------------------------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 170 --------------------------------------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred --------------------------------------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 1123555666 3344333322 7788899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
..+... .++++.+||++.++. +...+.. .-+.++.|+|+--.|...+
T Consensus 206 lcasGg-------------kdg~~~LwdL~~~k~--lysl~a~-----------~~v~sl~fspnrywL~~at------- 252 (315)
T KOG0279|consen 206 LCASGG-------------KDGEAMLWDLNEGKN--LYSLEAF-----------DIVNSLCFSPNRYWLCAAT------- 252 (315)
T ss_pred EEecCC-------------CCceEEEEEccCCce--eEeccCC-----------CeEeeEEecCCceeEeecc-------
Confidence 888743 245999999985432 3332221 2347899999876555421
Q ss_pred cccccccCCeEEEEeCCCCCCC-CceEEE---------eeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGE-GPEILH---------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~-~~~~l~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
...|-+|++ +++ ....|. ..+..+-+++||+||+.|+..-..+. .++|.+.
T Consensus 253 -------~~sIkIwdl---~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 253 -------ATSIKIWDL---ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred -------CCceEEEec---cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 223667775 332 222221 01223456899999999876543333 6777653
No 137
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=4.8e-09 Score=115.49 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=140.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-CCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-~g~~~~lt~~~~~~ 241 (958)
..|.+|++.++|++.....+ +.+......++||||++|+.... ....|..++++ +|....+...+...
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~--------~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV---DVPGQVQPMVISPDKRHLYVGVR--------PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEE---ecCCCCccEEECCCCCEEEEEEC--------CCCcEEEEEECCCCceEEeeeecCCC
Confidence 37889998543432222223 23345677899999998866432 13456555554 44433222111110
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
....++++|||+.|+.+.. ....|.++++
T Consensus 81 ---~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~ 109 (330)
T PRK11028 81 ---SPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPL 109 (330)
T ss_pred ---CceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEE
Confidence 1347889999999987611 1233555555
Q ss_pred --CCee---eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccc
Q 002164 322 --DGTV---KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 322 --~g~~---~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~ 394 (958)
+|.. ...... .......++|||+++++.... .+.|.+||++. +.......... ..+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~--- 172 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV--- 172 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC---
Confidence 3321 111111 334566799999999877643 34899999975 32211100000 000
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec---c------ccCceeeec
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---L------RYGGISWCD 465 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---~------~~~~~~~sp 465 (958)
...+++.+.|+|||+.++... ...+.|.++++++ .+++.+.+.... . ....+.++|
T Consensus 173 --~g~~p~~~~~~pdg~~lyv~~------------~~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 173 --EGAGPRHMVFHPNQQYAYCVN------------ELNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred --CCCCCceEEECCCCCEEEEEe------------cCCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 013567899999999887741 1245677777521 123333321111 0 112377999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
||++|+.. +...+...+|.++.+++ ....+-...... . ...+.++|||++|+...
T Consensus 238 dg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~-~----p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 238 DGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET-Q----PRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc-c----CCceEECCCCCEEEEEE
Confidence 99988775 44333355666655542 111111111110 0 01178999999988765
No 138
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.26 E-value=6.3e-10 Score=122.65 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=120.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (958)
.|.||++||.+.... .| ...+..| +.+|.|++ .|.+|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQAY-----------SY----RKVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999642211 11 1223344 46899999 6667888775432 1234556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC--CCCC------------cc-----
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQ----- 804 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~~~~------------~~----- 804 (958)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +.
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6665554 235799999999999999999999999999999987642110 0000 00
Q ss_pred -------c--------cc----chhhhc----H----HHHHhcC-cc-------c---ccCCCCCCEEEEeeCCCCCCCC
Q 002164 805 -------N--------ED----RTLWEA----T----STYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 805 -------~--------~~----~~~~~~----~----~~~~~~s-p~-------~---~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
. .. ..++.. . ..+..+. .+ . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 0 00 000000 0 0000000 00 0 013578999999999999988
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
....+++.+.. ..+++++|+++|.+. .+..+++.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 458899999999875 5677888888888875
No 139
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.26 E-value=7.9e-09 Score=109.51 Aligned_cols=220 Identities=19% Similarity=0.171 Sum_probs=126.8
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+++.++.. . ......+.+. ..+.-..+||.|-+||- ++...+|.+|+....+-..-.+.+ .+-
T Consensus 40 sv~ir~i~~-~--~~~~iYtEH~--~~vtVAkySPsG~yiAS---------GD~sG~vRIWdtt~~~hiLKnef~--v~a 103 (603)
T KOG0318|consen 40 SVIIRNIDN-P--ASVDIYTEHA--HQVTVAKYSPSGFYIAS---------GDVSGKVRIWDTTQKEHILKNEFQ--VLA 103 (603)
T ss_pred EEEEEECCC-c--cceeeecccc--ceeEEEEeCCCceEEee---------cCCcCcEEEEeccCcceeeeeeee--ecc
Confidence 678888843 1 2233344332 35677899999998877 566778888886553221111111 112
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG 323 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g 323 (958)
+.+..++|+.||++|+... +++. ...+.+..|.+.
T Consensus 104 G~I~Di~Wd~ds~RI~avG----------------------EGre-----------------------rfg~~F~~DSG~ 138 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVG----------------------EGRE-----------------------RFGHVFLWDSGN 138 (603)
T ss_pred cccccceeCCCCcEEEEEe----------------------cCcc-----------------------ceeEEEEecCCC
Confidence 2377999999999999761 1110 234455655421
Q ss_pred eeeecCCC-ccccccccCCCCc-EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccc----cc
Q 002164 324 TVKEIGPP-AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFN----SV 397 (958)
Q Consensus 324 ~~~~l~~~-~~~~~~~~SpDGk-~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~----~~ 397 (958)
..-.++.. ..+.+.+|-|--- +|+..+++ +.+-++ +..|+.|. .+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdD-------------n~v~ff----------------eGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDD-------------NTVAFF----------------EGPPFKFKSSFREH 189 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCC-------------CeEEEe----------------eCCCeeeeeccccc
Confidence 22233332 3344444444322 22222211 112111 11222111 11
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEE
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (958)
...+..+.|||||+..+-. +.++.++++|- .+|.+.-.|. .+.+.+..++||||+++++..+
T Consensus 190 skFV~~VRysPDG~~Fat~-------------gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATA-------------GSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ccceeeEEECCCCCeEEEe-------------cCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence 2345778999999987663 56778999984 4555566665 4566788899999999999887
Q ss_pred eccccceEEEEEcCCC
Q 002164 475 WYKTRRTRTWVISPGS 490 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~ 490 (958)
.+.+ .+||.+...+
T Consensus 255 aDkt--~KIWdVs~~s 268 (603)
T KOG0318|consen 255 ADKT--IKIWDVSTNS 268 (603)
T ss_pred CCce--EEEEEeeccc
Confidence 7766 7888887654
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3.6e-10 Score=128.94 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=188.0
Q ss_pred CCCCceecCCCCEEEEEecCCC---------C--CchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc
Q 002164 110 PLPALSFSPQRDKILFLKRRAL---------P--PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~ 178 (958)
.+....|||||+.++....+.. . .+.++.++...+..+.+++++......+.+..|+||+++.++ ..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~ 238 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RN 238 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eE
Confidence 4556789999999988765521 1 344556667777888899998877777778899999995543 34
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+.+++ ..+....|+|+|+.|+... ....|.+|++.+|+..+........ +..+++++||..|
T Consensus 239 ~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~l 303 (456)
T KOG0266|consen 239 LKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNLL 303 (456)
T ss_pred EEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCEE
Confidence 56666644 5789999999997777644 4678889999988877666555543 7789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCC--c
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP--A 332 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~--~ 332 (958)
+... ....|.++|+ +|.. +.+... .
T Consensus 304 ~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 304 VSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred EEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCCC
Confidence 9661 2245778888 7762 333333 2
Q ss_pred -cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 -VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 -~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.+....|||||++|+....+ +.+.+|++... ..+....+.... .....+..+++|
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d-------------~~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLD-------------RTLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTGG 391 (456)
T ss_pred CceeEEEECCCCcEEEEecCC-------------CeEEEEEccCCcceeeecccCCcc----------eeEecccccCCC
Confidence 46889999999999988743 38999999844 334433332110 112234457778
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+.++.. .....|++|+. ..+.....+..+ ...+..+.|+|....++..+.......++|..
T Consensus 392 ~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 777663 44567899996 234455555555 56677889999999998887544433555543
No 141
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.25 E-value=8.9e-11 Score=129.66 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=109.9
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
|.+.+|.|+++|. +|+|.+...........+|+.+.++.+ + + ++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~Dl---~G~g~s~~~~~~~~~~a~dl~~ll~~l---~-l--~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDF---IGADGSLDVPIDTADQADAIALLLDAL---G-I--ARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeC---CCCCCCCCCCCCHHHHHHHHHHHHHHc---C-C--CcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 4356799999555 466655332222344566666555443 2 2 34 57999999999999999999999999
Q ss_pred EEEeccCCCCCCCC--CC------------------------------cccc--cchhhh------------cHH-----
Q 002164 787 GIARSGAYNRTLTP--FG------------------------------FQNE--DRTLWE------------ATS----- 815 (958)
Q Consensus 787 ~v~~~~~~~~~~~~--~~------------------------------~~~~--~~~~~~------------~~~----- 815 (958)
+|++++........ +. +... ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998653211000 00 0000 000000 000
Q ss_pred ----HHHhcCc-------------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCccC
Q 002164 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (958)
Q Consensus 816 ----~~~~~sp-------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~ 877 (958)
.....++ ...+.++++|+|+++|++|..+| +..++++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 11246788999999999999998 8888888776632 258889985 89987
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002164 878 AARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (958)
. .+....+...+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567788888899998763
No 142
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.23 E-value=5e-09 Score=103.22 Aligned_cols=259 Identities=12% Similarity=0.141 Sum_probs=165.9
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
..+.|+++. +.+....|++|+++|+-.+. ...|.+||.-+.......+.+... +-.++++|.|+.
T Consensus 47 ~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~ 111 (343)
T KOG0286|consen 47 TRRTLKGHL--NKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNF 111 (343)
T ss_pred eEEEecccc--cceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCe
Confidence 356677643 67999999999999998664 668999998876555555555544 678999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CC---eeeecCCC
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP 331 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g---~~~~l~~~ 331 (958)
++...-+ ..=.||.+.. +| ..+.|...
T Consensus 112 VAcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 112 VACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred EEecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCc
Confidence 9987100 1112333332 22 23345444
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec-C
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-D 409 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-D 409 (958)
+.+....|-+|+. |+..+. +.+.-+||++++....... ++...+-++.++| |
T Consensus 145 tgylScC~f~dD~~-ilT~SG-------------D~TCalWDie~g~~~~~f~------------GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNH-ILTGSG-------------DMTCALWDIETGQQTQVFH------------GHTGDVMSLSLSPSD 198 (343)
T ss_pred cceeEEEEEcCCCc-eEecCC-------------CceEEEEEcccceEEEEec------------CCcccEEEEecCCCC
Confidence 5566667777665 444442 3488899999665433222 2224456788999 7
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+++.+-- +-....++||+ .++...+....++.++..+.|-|+|..++..+++.+ .++|.+..+
T Consensus 199 ~ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD 261 (343)
T KOG0286|consen 199 GNTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRAD 261 (343)
T ss_pred CCeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCC
Confidence 8765541 23445678886 566666667788899999999999998887776655 678777654
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
- ...++..... .. +-..+.||..|+.|+....+ ....+||.=.++..-+..
T Consensus 262 ~----~~a~ys~~~~-~~---gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 262 Q----ELAVYSHDSI-IC---GITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred c----EEeeeccCcc-cC---CceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEee
Confidence 3 2444443221 11 11127799999877665521 148899976666554443
Q ss_pred C
Q 002164 570 S 570 (958)
Q Consensus 570 ~ 570 (958)
+
T Consensus 313 G 313 (343)
T KOG0286|consen 313 G 313 (343)
T ss_pred c
Confidence 3
No 143
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.23 E-value=2.4e-10 Score=107.75 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=136.7
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
....+.++++.+..+-+.+..- + ..-++|++||.- ...+ ..+....+..+++.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-----g---s~e~vvlcHGfr-----------S~Kn--~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-----G---STEIVVLCHGFR-----------SHKN--AIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-----C---CceEEEEeeccc-----------cccc--hHHHHHHHHHHHhcCceEEE
Confidence 3456677777777766644321 1 256899999941 1111 11123456677889999999
Q ss_pred cCCCCCCCCCCcccchh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 718 GPTTPIIGEGDEEANDR--FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~--~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|+.|.|++.+.-. .+..+.+|+..+++++..... ---+|+|||-||.+++..+.+.++ +.-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 88889998865422 234566999999999876322 124789999999999999999966 788888888776
Q ss_pred CCCC------C--------CCccc------ccchhhhcHHHHHhc--CcccccCC--CCCCEEEEeeCCCCCCCCChHHH
Q 002164 796 RTLT------P--------FGFQN------EDRTLWEATSTYVEM--SPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 796 ~~~~------~--------~~~~~------~~~~~~~~~~~~~~~--sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
.... + -++.. .....|...-..... +-.....+ .+||+|-+||..|.+|| .+.+
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 3221 0 01110 001112111111111 11111122 36899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
.++++.+.. .+|.++||++|.++..+
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh
Confidence 999888876 58999999999997554
No 144
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.22 E-value=4.1e-10 Score=124.85 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=53.0
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe-CCCCccCCCcccHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL-PFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~-p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+.+|++|+|+++|++|..+| +..++++.+.++.....++++.+ +++||... .++...+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456788999999999999998 89999999999876444455444 68999864 456677788888886
No 145
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.22 E-value=1.5e-10 Score=121.39 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=110.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (958)
.|.||++||.+.... .| ......| .+|.|++ .|.+|+|.+.... .......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~~-----------~w----~~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-----------DW----QPVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCChH-----------HH----HHHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 367999999642211 11 1223334 4799999 5666777764432 123344555554444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCC-----------CCC--ccccc-------
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~-----------~~~--~~~~~------- 807 (958)
. . +.+++.++||||||.+++.++.++|+ +++++++.++....... .+. +....
T Consensus 62 ~---~---~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 S---Y---NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred H---c---CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 3 2 33689999999999999999999865 49999887654321100 000 00000
Q ss_pred ---chhh-----hcHHH----------------HHhc------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 808 ---RTLW-----EATST----------------YVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 808 ---~~~~-----~~~~~----------------~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
.... ..... +... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 0000 00000 0000 1112456789999999999997532 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
. ..++++++++||.+. .++.+.+.+.+.+||.+
T Consensus 209 ~-----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 L-----ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred h-----cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 468999999999874 56678888888888864
No 146
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.21 E-value=9.3e-10 Score=111.06 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=116.2
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~ 733 (958)
..++.|.. .+.||+||+.||.. + ...++....+.+|++||+|+.++.....+.+
T Consensus 6 l~v~~P~~-----~g~yPVv~f~~G~~---------~------~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~------ 59 (259)
T PF12740_consen 6 LLVYYPSS-----AGTYPVVLFLHGFL---------L------INSWYSQLLEHVASHGYIVVAPDLYSIGGPD------ 59 (259)
T ss_pred eEEEecCC-----CCCcCEEEEeCCcC---------C------CHHHHHHHHHHHHhCceEEEEecccccCCCC------
Confidence 46778865 45699999999942 1 1112345677899999999997754433321
Q ss_pred hhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEeccCCCCCCCC
Q 002164 734 RFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~--~------~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~~ 800 (958)
....++++.+.++|+.+. . .+|-+|++|+|||.||-+|..++..+ +.+|++++.+.|+-......
T Consensus 60 --~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~ 137 (259)
T PF12740_consen 60 --DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGS 137 (259)
T ss_pred --cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccccccccc
Confidence 235677788889998772 1 25888999999999999999988876 45899999999975321110
Q ss_pred CCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCC------CCChH--HHHHHHHHHHhCCCcEEEEEeCC
Q 002164 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNS------GTLTM--QSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v------~~~~~--~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
. . .+..+ .+.| ..-+...|+||+...-.... +|.+. +-.+||++++. +.-.++.++
T Consensus 138 ~-----~-----~P~v~-~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~ 201 (259)
T PF12740_consen 138 Q-----T-----EPPVL-TYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKD 201 (259)
T ss_pred C-----C-----CCccc-cCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCC
Confidence 0 0 00000 0011 11123589999986666411 12233 34788888754 567777899
Q ss_pred CCcc
Q 002164 873 ESHG 876 (958)
Q Consensus 873 ~~H~ 876 (958)
.||.
T Consensus 202 ~GH~ 205 (259)
T PF12740_consen 202 YGHM 205 (259)
T ss_pred CCch
Confidence 9996
No 147
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=7.6e-10 Score=113.47 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=128.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
..+.+..||++|++||..+ .+...-||.+..++.- ...+..... .+..+.||||.++|+...
T Consensus 225 dEVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg---- 288 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACG---- 288 (519)
T ss_pred CcEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecC----
Confidence 4688999999999999865 3345567777665531 122222222 267899999999888651
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---ccccccccCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPD 342 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpD 342 (958)
....+++.|+ +|+.+..... ..+.+.+|-||
T Consensus 289 ---------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 289 ---------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred ---------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 1122778888 8877766654 45678899999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|.+++..+.+ ..+..||++|+....-... . ...+..++.++||++++..
T Consensus 324 g~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gv---r---------~~~v~dlait~Dgk~vl~v------ 372 (519)
T KOG0293|consen 324 GFRFVTGSPD-------------RTIIMWDLDGNILGNWEGV---R---------DPKVHDLAITYDGKYVLLV------ 372 (519)
T ss_pred CceeEecCCC-------------CcEEEecCCcchhhccccc---c---------cceeEEEEEcCCCcEEEEE------
Confidence 9998877743 4799999998753221110 0 0234678999999998875
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
.....+.+++. +...-+.+......+.++..|.||+.++..-...+ .++|.+.
T Consensus 373 -------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe--i~LWDl~ 425 (519)
T KOG0293|consen 373 -------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQE--IHLWDLE 425 (519)
T ss_pred -------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccCe--eEEeecc
Confidence 23445677764 33333435555667788999999998776554333 5566554
No 148
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=119.50 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=106.8
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
|++ ...|.+ +|..|+|++..+.-. .........+.++ |-++++. +++.|+|||+||+++..+|.++|++|
T Consensus 113 La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L---~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 113 LAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGL---EKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCC---cceeEeeccchHHHHHHHHHhChHhh
Confidence 444 788988 777888888654211 1111222333343 4444443 59999999999999999999999999
Q ss_pred eEEEEeccCC--CCC-CCC-------CCc-----c-cccchh-----------------------------hhcH-----
Q 002164 785 CCGIARSGAY--NRT-LTP-------FGF-----Q-NEDRTL-----------------------------WEAT----- 814 (958)
Q Consensus 785 ~a~v~~~~~~--~~~-~~~-------~~~-----~-~~~~~~-----------------------------~~~~----- 814 (958)
+.+|+++|.- ... ..+ ..+ . ....++ .++.
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999998741 100 000 000 0 000000 0000
Q ss_pred --------------------HHHHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 815 --------------------STYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 815 --------------------~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
-.+.+...++.+..++ +|+++|+|++|++- ...+.++...+ ....++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~--~~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSL--MKEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHh--hcccceEEEecC
Confidence 0001111123344455 89999999999874 35566666665 234689999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 002164 873 ESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+||.+. ..+.+.+.+.+..+++.
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999975 45566677777777654
No 149
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.20 E-value=7.8e-10 Score=123.55 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=58.9
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+.+|++|+|+|+|++|..+| +..++++.+.+...+..+++++++ ++||... .+....+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999998 899999999998877777888785 8999864 566677888899998874
No 150
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.19 E-value=4.2e-10 Score=125.08 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=141.4
Q ss_pred CceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe
Q 002164 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
+..+.+.++ .+.+...+||||.+.|+-++ +...+.+|.+++-.......++.. .+..++|+|-|-
T Consensus 442 ~~~~~L~GH--~GPVyg~sFsPd~rfLlScS---------ED~svRLWsl~t~s~~V~y~GH~~----PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 442 GTSRTLYGH--SGPVYGCSFSPDRRFLLSCS---------EDSSVRLWSLDTWSCLVIYKGHLA----PVWDVQFAPRGY 506 (707)
T ss_pred ceeEEeecC--CCceeeeeecccccceeecc---------CCcceeeeecccceeEEEecCCCc----ceeeEEecCCce
Confidence 445667664 46899999999999998865 244555555556544444443332 367888999997
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-cccc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYT 335 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~ 335 (958)
+++..+.+ ++..||..+-+...|.+..+ ..+.
T Consensus 507 YFatas~D-----------------------------------------------~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 507 YFATASHD-----------------------------------------------QTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred EEEecCCC-----------------------------------------------ceeeeeecccCCchhhhcccccccc
Confidence 77755111 34457766654444444444 7777
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.+.|.|++.+++..+.+ ..+.+||+.++...++.. ++...+..++|||+|++|+-
T Consensus 540 cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~------------GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFT------------GHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEec------------CCCCceEEEEEcCCCceEee
Confidence 89999999999877643 489999998655444432 22245678999999999887
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
- +..+.|.+||+ ..|....++..+.+.+.++.||.||..|+....+.. .+||.+.
T Consensus 595 g-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--V~lWD~~ 649 (707)
T KOG0263|consen 595 G-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS--VRLWDLT 649 (707)
T ss_pred c-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe--EEEEEch
Confidence 2 55667889996 344455566666778889999999999987765443 6677443
No 151
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.19 E-value=3e-11 Score=127.39 Aligned_cols=214 Identities=26% Similarity=0.350 Sum_probs=122.2
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCC-c-CcHHHHHHHHCC----cEEEEcCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-I-GSTSVLLWLARG----FAILGGPTTP 722 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~la~~G----~~vl~~~~~~ 722 (958)
|.....++|+|++|++. .++|+|+++||.. .+.. . .......+++.| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~--~~~PvlylldG~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPS--KPYPVLYLLDGQS---------------GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTT--TTEEEEEEESHTT---------------HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCC--CCCEEEEEccCCc---------------cccccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 66788999999998444 3699999999930 0100 0 011222334443 4444433322
Q ss_pred CC-CCCC--------ccc-----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 723 II-GEGD--------EEA-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 723 ~~-G~G~--------~~~-----~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.. .++. ... ...+..... .+.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLT---EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHH---THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehh---ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 21 1100 000 111222222 356667777777777779999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccc-----cCCCCCCEEEEeeCCCCCCCC--------ChHHHHHHH
Q 002164 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMS-----ANKLKKPILLVHGEEDNNSGT--------LTMQSDRFF 855 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~~~~P~Lii~G~~D~~v~~--------~~~~~~~~~ 855 (958)
+++|.++.....|+. ..... |...++... ...-..++++..|+.|..... ......++.
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~ 216 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEA------WKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELA 216 (251)
T ss_dssp EESEESETTHCHHHH--STCGH------HGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHH
T ss_pred ccCccccccccccCc--CCcHH------hhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhH
Confidence 999986643211211 01111 112222111 122346889999999983210 012334455
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+.|+..|.+..+..++| +|... .....+...+.||
T Consensus 217 ~~l~~~g~~~~~~~~~G-~H~~~---~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 217 QLLKAKGIPHTYHVFPG-GHDWA---YWRRRLPDALPWM 251 (251)
T ss_dssp HHCCCEECTTESEEEHS-ESSHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEecC-ccchh---hHHHHHHHHHhhC
Confidence 55666678888889995 77642 2344445555554
No 152
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.18 E-value=4.9e-10 Score=119.09 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=113.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||..... ..| ......|.++||.|++ .+.+|+|.+.... .......+++.+.
T Consensus 18 ~p~vvliHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGGS-----------WCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCCc-----------CcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 58899999953211 111 1334567778999999 5666777653221 2233444444443
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC-CCC-------C--------------CCcc
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~-------~--------------~~~~ 804 (958)
+ .+.. ..+++.++||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i---~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 L---SSLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred H---HhcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 3 3332 1368999999999999999999999999999998653210 000 0 0000
Q ss_pred c----ccchh---------hh-cHH---H-HHh------cCccc------ccCCC-CCCEEEEeeCCCCCCCCChHHHHH
Q 002164 805 N----EDRTL---------WE-ATS---T-YVE------MSPFM------SANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (958)
Q Consensus 805 ~----~~~~~---------~~-~~~---~-~~~------~sp~~------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~ 853 (958)
. ..... +. .+. . +.. ...+. ...++ ++|+++|.|++|..+| ++..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 000 0 000 01111 12344 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.+.+.. .+++.++ +||... .+....+...|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 8776543 2677777 799863 4555555555555443
No 153
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.17 E-value=2.1e-08 Score=114.10 Aligned_cols=251 Identities=12% Similarity=0.057 Sum_probs=144.7
Q ss_pred ceEEEEEc-CCeeeecC-CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE--EEeccCCcccc
Q 002164 314 TQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~-~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~ 389 (958)
.+|+++|+ +|+...-. .......+.|++||+.++|+......... ....+.+++++.+.+... +.|...+...
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~- 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP- 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC-
Confidence 56999999 88443211 11222348999999999999865431100 112356899998875432 2333322110
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC-----CCceEEEeecccc-Cceee
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISW 463 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-----~~~~~l~~~~~~~-~~~~~ 463 (958)
...-.+..|+||+.|++..... .....+|++++ .. ...+.+....... ..+..
T Consensus 227 ---------~~~~~~~~s~d~~~l~i~~~~~---------~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 227 ---------FWFVSVSRSKDGRYLFISSSSG---------TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp ---------TSEEEEEE-TTSSEEEEEEESS---------SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred ---------cEEEEEEecCcccEEEEEEEcc---------ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEc
Confidence 1124678999999888753331 11367999996 33 2455664432222 22333
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCC-cE-EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEc
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVA-PR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (958)
. |..+++.++.+..+.+|+.++++..... .. .+......... -.++..+.+|+.....
T Consensus 286 ~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~Lvl~~~~----------- 345 (414)
T PF02897_consen 286 H--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSLFKDYLVLSYRE----------- 345 (414)
T ss_dssp E--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEEETTEEEEEEEE-----------
T ss_pred c--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEEECCEEEEEEEE-----------
Confidence 3 7778888887777789999999886321 12 23222211100 2345556666666532
Q ss_pred cCCCCCCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 542 GNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 542 ~~~~~~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
...++|.++++. +.....+...... .+. ..+..++++.+++..++...|+.+|.+|+.+++
T Consensus 346 -------~~~~~l~v~~~~~~~~~~~~~~p~~g----~v~-------~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 346 -------NGSSRLRVYDLDDGKESREIPLPEAG----SVS-------GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -------TTEEEEEEEETT-TEEEEEEESSSSS----EEE-------EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -------CCccEEEEEECCCCcEEeeecCCcce----EEe-------ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 234589999998 5555555443321 111 123456788999999999999999999999999
Q ss_pred eeEeec
Q 002164 621 SCQITD 626 (958)
Q Consensus 621 ~~~Lt~ 626 (958)
.+++++
T Consensus 408 ~~~~k~ 413 (414)
T PF02897_consen 408 LTLLKQ 413 (414)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988874
No 154
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=5.9e-09 Score=101.06 Aligned_cols=269 Identities=9% Similarity=0.077 Sum_probs=162.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..+.|.-||.++|..+.+ ..+.+|++..+ ...+.+..-.++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh~ 64 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGHT 64 (313)
T ss_pred hcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCCC
Confidence 357789999999999988775 35678877442 111122111123
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+-+..|+|-..-++++.. +...|.+||...++....+....+. ....|+|||+++++..
T Consensus 65 ~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~en-----i~i~wsp~g~~~~~~~------ 125 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGEN-----INITWSPDGEYIAVGN------ 125 (313)
T ss_pred cchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCcc-----eEEEEcCCCCEEEEec------
Confidence 46788899986665655542 4668888998888887666554442 3688999999999871
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|-.++. +-+...-.+. ..+....|+-++. +
T Consensus 126 -------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~ 161 (313)
T KOG1407|consen 126 -------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-L 161 (313)
T ss_pred -------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-E
Confidence 1123555555 3332222222 4456778885554 4
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+|..+.. +.+.|..-.. +.+..|..++ .+---+.|+|||++++.-
T Consensus 162 Fflt~Gl------------G~v~ILsypsLkpv~si~AH~-------------snCicI~f~p~GryfA~G--------- 207 (313)
T KOG1407|consen 162 FFLTNGL------------GCVEILSYPSLKPVQSIKAHP-------------SNCICIEFDPDGRYFATG--------- 207 (313)
T ss_pred EEEecCC------------ceEEEEeccccccccccccCC-------------cceEEEEECCCCceEeec---------
Confidence 5554332 2455543321 1122222222 233468999999998872
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC-c
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS-E 504 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 504 (958)
+....+-+||++ +=--.+.++..++.++.++||-||+.|+.++++.- |=+....+|+ .+++..- .
T Consensus 208 ----sADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~----IDIA~vetGd----~~~eI~~~~ 273 (313)
T KOG1407|consen 208 ----SADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDHF----IDIAEVETGD----RVWEIPCEG 273 (313)
T ss_pred ----cccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccce----EEeEecccCC----eEEEeeccC
Confidence 333456678752 22345777889999999999999999998864321 2233334431 1111111 1
Q ss_pred cccCCCCCCceEeccCCceEEEEeee
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
..+. ++|.|.--.|+|...+
T Consensus 274 ~t~t------VAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFT------VAWHPKRPLLAYACDD 293 (313)
T ss_pred Ccee------EEecCCCceeeEEecC
Confidence 1222 7899999999998854
No 155
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=4.5e-09 Score=119.99 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=154.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....+||||+.++.... ...+.++...+++ ..+..... ...+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l~~h----~~~v~~~~fs~d~~~l~s~s----- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLRELSGH----TRGVSDVAFSPDGSYLLSGS----- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhcccccc----ccceeeeEECCCCcEEEEec-----
Confidence 5666899999999888542 4456666665555 22221112 22378999999999887651
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CC-eeeecCCC-ccccccccCCCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g-~~~~l~~~-~~~~~~~~SpDG 343 (958)
...+|.++++ .+ ..+.+..+ ..++..+|+|+|
T Consensus 223 --------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 223 --------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred --------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC
Confidence 1234666666 33 34555544 778999999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+.|+..+. ++.+.+||+.+++. +.|..+. .++..+.|++||+.|+..
T Consensus 259 ~~i~Sgs~-------------D~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~------ 306 (456)
T KOG0266|consen 259 NLLVSGSD-------------DGTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA------ 306 (456)
T ss_pred CEEEEecC-------------CCcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc------
Confidence 77666653 34899999997544 4444332 456789999999988773
Q ss_pred CCcccccccCCeEEEEeCCCCCCCC---ceEEEeecc--ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
+.++.+.+||+ .++. ...+..... .+..+.|+|+|++|+....+.. .++|.+.... ...
T Consensus 307 -------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~----~~~ 370 (456)
T KOG0266|consen 307 -------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK----SVG 370 (456)
T ss_pred -------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc----cee
Confidence 44667899996 4444 234433333 3678999999999988765433 5566555322 122
Q ss_pred EeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+......++.. .. +..+++|++++....+ ..+++||+.++...+...
T Consensus 371 ~~~~~~~~~~~~-~~--~~~~~~~~~i~sg~~d---------------------~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 371 TYTGHSNLVRCI-FS--PTLSTGGKLIYSGSED---------------------GSVYVWDSSSGGILQRLE 418 (456)
T ss_pred eecccCCcceeE-ec--ccccCCCCeEEEEeCC---------------------ceEEEEeCCccchhhhhc
Confidence 222222211110 00 2347888888877632 259999998766554443
No 156
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.17 E-value=2.3e-09 Score=113.99 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=147.5
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
.-++.-++..||..+..-++.+..-.. .+.+..|+||++||-...+ ...+-...+....++||.++
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S-------------~~~YVr~lv~~a~~~G~r~V 158 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGS-------------HESYVRHLVHEAQRKGYRVV 158 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCC-------------hhHHHHHHHHHHHhCCcEEE
Confidence 334555677899999888887654321 1224579999999943211 11222234445567999999
Q ss_pred EcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEecc
Q 002164 717 GGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSG 792 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~ 792 (958)
..+. +|.|.+.- +.-+-....+|+.+++++++++..- .++.++|.||||.+...++++..+ .+.|+++++-
T Consensus 159 VfN~---RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~--a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~ 233 (409)
T KOG1838|consen 159 VFNH---RGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQ--APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCN 233 (409)
T ss_pred EECC---CCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCC--CceEEEEecchHHHHHHHhhhccCCCCceeEEEEec
Confidence 9444 45554432 2333345688999999999998432 489999999999999999987532 2445555444
Q ss_pred CCCCCC---------CCC----------------------------Ccccccc---hh-----------hhcHHHHHhcC
Q 002164 793 AYNRTL---------TPF----------------------------GFQNEDR---TL-----------WEATSTYVEMS 821 (958)
Q Consensus 793 ~~~~~~---------~~~----------------------------~~~~~~~---~~-----------~~~~~~~~~~s 821 (958)
.+|... ... ....... .+ -.-.+.|.+.|
T Consensus 234 Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aS 313 (409)
T KOG1838|consen 234 PWDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKAS 313 (409)
T ss_pred cchhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcc
Confidence 444210 000 0000000 00 01126678889
Q ss_pred cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC-C-C-cccHHHHHHH-HHHHHHHh
Q 002164 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-A-A-RESIMHVLWE-TDRWLQKY 897 (958)
Q Consensus 822 p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~-~-~-~~~~~~~~~~-i~~fl~~~ 897 (958)
+...+++|++|+|+++..+|+++| . .+.-.-+ .++ ...+-+++-..+||.- . + ..+..-++++ +.+|+...
T Consensus 314 s~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~~~-~~~-np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 314 SSNYVDKIKVPLLCINAADDPVVP--E-EAIPIDD-IKS-NPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred hhhhcccccccEEEEecCCCCCCC--c-ccCCHHH-Hhc-CCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 999999999999999999999997 3 3332222 222 3367777777789952 1 1 1144556666 77887766
Q ss_pred hc
Q 002164 898 CV 899 (958)
Q Consensus 898 l~ 899 (958)
..
T Consensus 389 ~~ 390 (409)
T KOG1838|consen 389 IF 390 (409)
T ss_pred Hh
Confidence 53
No 157
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.16 E-value=6.5e-09 Score=108.76 Aligned_cols=266 Identities=15% Similarity=0.136 Sum_probs=171.7
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
...+....|+-||..||+.. ..+.+.+|+.+|+....+..+.+. +-++.|..+|.+|+...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~----- 295 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG----- 295 (524)
T ss_pred cCCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc-----
Confidence 34788899999999999944 577888889888777666554443 77999999999999661
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk 344 (958)
....+.++|. +|+..+.... ....++.|--+.+
T Consensus 296 --------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 296 --------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred --------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 1234567777 8876665544 2224567765544
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.. ..+ .++.|+++.++.+.+ +.+.. +...+..+.|.|-|+.|+--
T Consensus 332 F~-ts~-------------td~~i~V~kv~~~~P~~t~~G-------------H~g~V~alk~n~tg~LLaS~------- 377 (524)
T KOG0273|consen 332 FA-TSS-------------TDGCIHVCKVGEDRPVKTFIG-------------HHGEVNALKWNPTGSLLASC------- 377 (524)
T ss_pred Ee-ecC-------------CCceEEEEEecCCCcceeeec-------------ccCceEEEEECCCCceEEEe-------
Confidence 32 222 134688888875543 22222 22456789999999877653
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCc---------eEEEEEeccccceEEEEEcCCCCCCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---------~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
+.+..+-+|.. .++.....+..+...+..+.|||+|. .|+..+.+. .+..+|...+ .
T Consensus 378 ------SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds----tV~lwdv~~g--v 443 (524)
T KOG0273|consen 378 ------SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS----TVKLWDVESG--V 443 (524)
T ss_pred ------cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC----eEEEEEccCC--c
Confidence 44556777764 23444455555555566778888754 344443332 2444455553 4
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccc
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~ 574 (958)
+...+....+.+|+ ++|||+|++++++..+ ..|.+|+..+++..+-..+.+.+
T Consensus 444 ~i~~f~kH~~pVys------vafS~~g~ylAsGs~d---------------------g~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYS------VAFSPNGRYLASGSLD---------------------GCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred eeEeeccCCCceEE------EEecCCCcEEEecCCC---------------------CeeEeccccchheeEeecCCCeE
Confidence 55566667777887 8999999999988732 15889999998877666555420
Q ss_pred ccceeEeecCCCccccccccCCEEEEEEe
Q 002164 575 YYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
+ ++.|+.+|+++.....
T Consensus 497 -f-----------el~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 497 -F-----------ELCWNAAGDKLGACAS 513 (524)
T ss_pred -E-----------EEEEcCCCCEEEEEec
Confidence 1 2467777866654443
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5e-08 Score=104.13 Aligned_cols=306 Identities=13% Similarity=0.168 Sum_probs=174.8
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
.|..+++--.+ .-..+.|||-|.+|+..-.+ +|-+|- | .
T Consensus 201 ~p~~ie~RenW-Tetyv~wSP~GTYL~t~Hk~----------------------------------GI~lWG----G--~ 239 (698)
T KOG2314|consen 201 EPSLIEERENW-TETYVRWSPKGTYLVTFHKQ----------------------------------GIALWG----G--E 239 (698)
T ss_pred chhhhhhhhcc-eeeeEEecCCceEEEEEecc----------------------------------ceeeec----C--c
Confidence 34445544444 34568999999999877653 566763 2 1
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeecc--ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
.-.++..+.+ ..+....|||.-++|+.-+.... ..++++..+|.+||+.+|...+-........ .....+.||-|+
T Consensus 240 ~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~Dd 317 (698)
T KOG2314|consen 240 SFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDD 317 (698)
T ss_pred cHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCC
Confidence 2222322322 25788999999999987654331 2334567899999999998776544322110 012378899999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCCcccc
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYT 335 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~ 335 (958)
++++....+. ..|+ ....+.++ +++.-.+ .++.
T Consensus 318 Ky~Arm~~~s-------------isIy-----------------------------Etpsf~ll--d~Kslki---~gIr 350 (698)
T KOG2314|consen 318 KYFARMTGNS-------------ISIY-----------------------------ETPSFMLL--DKKSLKI---SGIR 350 (698)
T ss_pred ceeEEeccce-------------EEEE-----------------------------ecCceeee--cccccCC---cccc
Confidence 9999772100 0000 11112233 3333333 5788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+.|||-+..|||-..... ..+..+.+..+-.+. .+...-+.. ....+.|..+|.+|.
T Consensus 351 ~FswsP~~~llAYwtpe~~--------~~parvtL~evPs~~~iRt~nlfnV-------------sDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPETN--------NIPARVTLMEVPSKREIRTKNLFNV-------------SDCKLHWQKSGDYLC 409 (698)
T ss_pred CcccCCCcceEEEEccccc--------CCcceEEEEecCccceeeeccceee-------------eccEEEeccCCcEEE
Confidence 9999999999999874321 123456666655332 222111111 123578999999999
Q ss_pred EEEEeccCCCcccccccCC--eEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc-ccceEEEEEcCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~~~~~~ 491 (958)
+-+++...+.. .+... .|+.++ +-..+.........+-.++|-|.|.+.+..+... ..+.+.|-+....+
T Consensus 410 vkvdR~tK~~~---~g~f~n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 410 VKVDRHTKSKV---KGQFSNLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred EEEEeeccccc---cceEeeEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 98776543220 01111 355554 2222222233344566789999999887765433 23466777775443
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++..+......... .+.|||.|++++....
T Consensus 483 --~~~lVk~~dk~~~N------~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 483 --KPSLVKELDKKFAN------TVFWSPKGRFVVVAAL 512 (698)
T ss_pred --chhhhhhhcccccc------eEEEcCCCcEEEEEEe
Confidence 33333211111111 1779999999988763
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=4.6e-08 Score=107.76 Aligned_cols=226 Identities=8% Similarity=0.019 Sum_probs=114.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eE-EEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
+....+.++|||++|+..... .+.+.+|+++.. .. +.+...+. ..++..+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCC
Confidence 345678899999999887632 347888988632 11 11111110 023456789999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-----EE-eeccccCceeeecCCceEEEEEeccccceEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-----LH-KLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-----l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
|+.+++. + ...+.|++++++ ..+.... +. ........+.|+|||++++...... +...+
T Consensus 137 g~~l~v~-~-----------~~~~~v~v~d~~--~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-~~v~v 201 (330)
T PRK11028 137 NRTLWVP-C-----------LKEDRIRLFTLS--DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-SSVDV 201 (330)
T ss_pred CCEEEEe-e-----------CCCCEEEEEEEC--CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-CEEEE
Confidence 9988763 1 234678888862 2222211 11 1122245689999999887764433 22445
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
|.++..++..+....................+.++|||++++.... ....|.+|+++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------------------~~~~I~v~~i~~~~ 261 (330)
T PRK11028 202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--------------------TASLISVFSVSEDG 261 (330)
T ss_pred EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--------------------CCCeEEEEEEeCCC
Confidence 5555333211111111111111000000112668999998776531 11246677664321
Q ss_pred -eEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEee
Q 002164 564 -KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (958)
Q Consensus 564 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt 625 (958)
...+...... ...-....+++||+.+++..... ..-.+|.++..+|..+.+.
T Consensus 262 ~~~~~~~~~~~---------~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 262 SVLSFEGHQPT---------ETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETGLLTELG 314 (330)
T ss_pred CeEEEeEEEec---------cccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCCcEEEcc
Confidence 1122111100 00111357899999888876532 2234555555566655544
No 160
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=9.4e-08 Score=98.02 Aligned_cols=252 Identities=9% Similarity=0.069 Sum_probs=146.2
Q ss_pred EEEEEc-CCeeeecCCC----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCC-ccc
Q 002164 316 LVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLP-LAE 388 (958)
Q Consensus 316 l~~~~~-~g~~~~l~~~----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~-~~~ 388 (958)
-|.+|- +|....+... .....+++++||++|+...-. .+.|.++.++. +.+..+.... ...
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------------~g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------------SGSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred EEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------------CceEEEEEcccCCccccceeeeecCC
Confidence 445554 5766655432 333678999999988877633 24677777752 3332221110 001
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE----eeccccCceeee
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWC 464 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~~~s 464 (958)
..|. ......-.....++|||+.++.. + -+.++|+++++ +-++..... .....-+.+.|.
T Consensus 136 ~~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 136 SGPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred CCCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceEEEc
Confidence 1111 00111224567899999988763 1 23567888886 333333322 222234568999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCC
Q 002164 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (958)
|+|+..+...+-++ ...+|.++...++.+..+..+.-.++..+......+..||||++|+......
T Consensus 200 pn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~------------- 265 (346)
T COG2706 200 PNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH------------- 265 (346)
T ss_pred CCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-------------
Confidence 99987776655443 3678888876554444444444444444444455588899999887654221
Q ss_pred CCCCCCCCeEEEEECCCCceEEEec--CCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 545 ATPEGNIPFLDLFDINTGSKERIWE--SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 545 ~~~~~~~~~L~~~dl~~g~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
+.-.++.+|.++|+...+.. ..+. .. ..+.|+++|+.|++..+.... -.+|.+|..+|+.+
T Consensus 266 -----dsI~~f~V~~~~g~L~~~~~~~teg~----~P-------R~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~ 328 (346)
T COG2706 266 -----DSIAVFSVDPDGGKLELVGITPTEGQ----FP-------RDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLT 328 (346)
T ss_pred -----CeEEEEEEcCCCCEEEEEEEeccCCc----CC-------ccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEE
Confidence 12246666777776554422 1211 01 135788889888887775544 67899999999887
Q ss_pred Eeec
Q 002164 623 QITD 626 (958)
Q Consensus 623 ~Lt~ 626 (958)
.+..
T Consensus 329 ~~~~ 332 (346)
T COG2706 329 LLGR 332 (346)
T ss_pred eccc
Confidence 7664
No 161
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=2.6e-09 Score=106.42 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=107.2
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.|+|+|++|++.... +++..+.. ..+..+|+.++... .+...+. +...+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~------------------~~~~~~ks---~~~~~~l~~~~~~~----~~~~~i~-l~~~~~I 62 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQT------------------RVDKSGKS---YYGEFELFYLNEKN----IPVESIE-LKKEGPI 62 (194)
T ss_pred EEEEecccCCEEEEEEEE------------------eeccCcce---EEeeEEEEEEecCC----Cccceee-ccCCCce
Confidence 357799999999997752 02211111 11224566655432 3333333 2222359
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
...+|||+|+++|.+.. .....|.++++++.....+ +... ...+.|||+|++|+++....
T Consensus 63 ~~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~n------ 122 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFGN------ 122 (194)
T ss_pred EEEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEccC------
Confidence 99999999999988752 2234777788764333332 2222 45789999999999872100
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEe
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISS 350 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~ 350 (958)
..+.|.++|. +.+.-..........++|||||++|+...
T Consensus 123 ----------------------------------------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 123 ----------------------------------------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ----------------------------------------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 1244677777 44333222335567899999999999876
Q ss_pred ecCCccccccCCCCCceeEEEeccCceEEE
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~ 380 (958)
.. |..+.++.+.||+..|+....
T Consensus 163 t~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 163 TS-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ec-------cceeccccEEEEEecCeEeEe
Confidence 43 123345678899988875543
No 162
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=9.4e-09 Score=112.61 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=157.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC-CCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~-~~~~ 241 (958)
..+|+|+..+ +....|..+. ...+..+.|+++|++|+... ....|.+||....+..+-... ...+
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4799999765 5666665442 34789999999999999944 467888888775443333222 2222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+..++|. +..+.... +...|...|+
T Consensus 263 ----vg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEec-------------------------------------------------CCCcEEEEEE
Confidence 7789998 33344331 1122444444
Q ss_pred -CC-e-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccc
Q 002164 322 -DG-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 322 -~g-~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~ 396 (958)
.+ . ...+... ..+-...|++||++++-..++ +.+.|||..... ...++.+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H------------ 342 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEH------------ 342 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecc------------
Confidence 22 1 1112223 566788999999999877654 489999985332 2233332
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEec
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
...+..++|+|=-+.|+.. ||+ ..+..|..|+. .+++..........+.++.||+..+.|+.+...
T Consensus 343 -~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 343 -TAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred -ceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 2556789999977777663 111 33557888985 344433334455568889999999999998876
Q ss_pred cccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
..+...||.+..-. +......+...+.. +++||||+.|+.+..
T Consensus 409 s~n~i~lw~~ps~~----~~~~l~gH~~RVl~------la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 409 SENQITLWKYPSMK----LVAELLGHTSRVLY------LALSPDGETIVTGAA 451 (484)
T ss_pred CCCcEEEEeccccc----eeeeecCCcceeEE------EEECCCCCEEEEecc
Confidence 66567888886422 12222222222222 789999999988764
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.13 E-value=2.1e-09 Score=107.17 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=89.7
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
..+|||+|++||..++- .+.|.|..+ -+..+|-..- ..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~cl--dki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLCL--DKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHHH--HHhh
Confidence 67899999999998863 567776643 2333331111 2578
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..-|+.|..+|+-... . ...|.++++..-+-. ++-.++. ++....|||||+.|..++.
T Consensus 53 yieW~ads~~ilC~~y------k--~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tse-------- 111 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY------K--DPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSE-------- 111 (447)
T ss_pred heeeeccceeeeeeee------c--cceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeec--------
Confidence 8999999999987543 1 335666665543332 2222222 2778999999988886510
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
...+|-+..+ +.+...+..+ ..+..++|.|||++.+..
T Consensus 112 ----------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 112 ----------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred ----------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeee
Confidence 2234556666 5555555444 556788999999999988
Q ss_pred eec
Q 002164 350 SIH 352 (958)
Q Consensus 350 ~~~ 352 (958)
+.+
T Consensus 152 sRr 154 (447)
T KOG4497|consen 152 SRR 154 (447)
T ss_pred ecc
Confidence 744
No 164
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.12 E-value=1.7e-08 Score=124.49 Aligned_cols=235 Identities=13% Similarity=0.049 Sum_probs=139.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC---CCCCC--ceeeeccC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLG--QEIEIQGF 185 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~---dg~~~--~~~~lt~~ 185 (958)
+..++|||||+++|....+ +.|.||++.. ++... ....+.
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~~~~~~~~~~~-- 530 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGRDIHYPVVELA-- 530 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCcccccccccccceEEec--
Confidence 5567899999988887765 5788998742 11000 111121
Q ss_pred CCCCcccceeecCC-CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCeEEEEEec
Q 002164 186 PDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIP 263 (958)
Q Consensus 186 ~~~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~ 263 (958)
....+....|+|. +++|+... ....|.+||+.+++........... +..++|+| |+..|+...
T Consensus 531 -~~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~Sgs- 595 (793)
T PLN00181 531 -SRSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLASGS- 595 (793)
T ss_pred -ccCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEEEc-
Confidence 2235677899875 56666543 3568889998887654433333222 77899996 788877651
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCCcccccccc-C
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-S 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~-S 340 (958)
....|.++++ ++.. ..+.....+..+.| +
T Consensus 596 ------------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 596 ------------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred ------------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 1234666676 5532 23322245566777 5
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
++|+.|++.+. ++.|.+||+.... ...+..+ ...+..+.|+ |+..++..
T Consensus 628 ~~g~~latgs~-------------dg~I~iwD~~~~~~~~~~~~~h-------------~~~V~~v~f~-~~~~lvs~-- 678 (793)
T PLN00181 628 ESGRSLAFGSA-------------DHKVYYYDLRNPKLPLCTMIGH-------------SKTVSYVRFV-DSSTLVSS-- 678 (793)
T ss_pred CCCCEEEEEeC-------------CCeEEEEECCCCCccceEecCC-------------CCCEEEEEEe-CCCEEEEE--
Confidence 67998888763 3489999997532 1222211 1345677886 66655442
Q ss_pred eccCCCcccccccCCeEEEEeCCCC----CCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+..+.|.+|++... .......+..+...+..+.|+|+|++|+..+..+. ..+|.
T Consensus 679 -----------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~--v~iw~ 736 (793)
T PLN00181 679 -----------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE--VFVYH 736 (793)
T ss_pred -----------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE--EEEEE
Confidence 34557888886211 11223344444555667899999998887765443 44444
No 165
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.12 E-value=1.8e-09 Score=116.19 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=119.3
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCC-cccchhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGD-EEANDRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~-~~~~~~~~~~~~~D~~~a 746 (958)
..|.||++||.....+. |.. ....+.. .|+.|++ .|..|+|. +..+... .....+....
T Consensus 57 ~~~pvlllHGF~~~~~~-----------w~~----~~~~L~~~~~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~ 117 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFS-----------WRR----VVPLLSKAKGLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVEL 117 (326)
T ss_pred CCCcEEEeccccCCccc-----------Hhh----hccccccccceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHH
Confidence 36889999995322211 111 1112232 3799999 55666663 2222211 1223333344
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE---EeccCCCCCCC--------------------CC--
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI---ARSGAYNRTLT--------------------PF-- 801 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~~~~~~~~~--------------------~~-- 801 (958)
+..+...... +++.++|||+||++++.+|+.+|+.++.++ ...+.+...-. +.
T Consensus 118 i~~~~~~~~~--~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 195 (326)
T KOG1454|consen 118 IRRFVKEVFV--EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSL 195 (326)
T ss_pred HHHHHHhhcC--cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCcccc
Confidence 4333333222 469999999999999999999999999999 44443221000 00
Q ss_pred ----C-ccc-----------ccchhhhcH--------------HHH-------H--hcCcccccCCCC-CCEEEEeeCCC
Q 002164 802 ----G-FQN-----------EDRTLWEAT--------------STY-------V--EMSPFMSANKLK-KPILLVHGEED 841 (958)
Q Consensus 802 ----~-~~~-----------~~~~~~~~~--------------~~~-------~--~~sp~~~~~~~~-~P~Lii~G~~D 841 (958)
. +.. .....++.. +.+ . .......+.++. +|+||++|+.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D 275 (326)
T KOG1454|consen 196 TEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKD 275 (326)
T ss_pred ccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcC
Confidence 0 000 000000000 000 0 012233456666 99999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+| .+.+.++.+.+ -.+++.+++++||... .+..+.+...|..|+.++
T Consensus 276 ~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 276 QIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEEVAALLRSFIARL 324 (326)
T ss_pred CccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHHHHHHHHHHHHHh
Confidence 9999 77666665555 3579999999999875 477888999999999875
No 166
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=2.2e-08 Score=107.18 Aligned_cols=134 Identities=9% Similarity=0.032 Sum_probs=76.8
Q ss_pred ccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+.+++ ||++++++.. +++++.|+.+.....+................+.+...++++|||++++
T Consensus 198 rP~~~~~dg~~~~vs~e--------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTYT--------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred CCceEcCCCcEEEEecC--------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 445677 8877776652 4899999876544333221110000000001123445599999999998
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+...... .+ ......+.|+++|. .+++...-........++++||||+.++|..+... ..|.++|..++
T Consensus 264 V~~~~~~--~~-thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsViD~~t~ 332 (352)
T TIGR02658 264 LLADQRA--KW-THKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYIFDAETG 332 (352)
T ss_pred EEecCCc--cc-cccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEEEECcCC
Confidence 8432111 00 11134568999995 44333322233456778999999996667666543 45888998775
No 167
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.09 E-value=6.2e-10 Score=104.04 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=132.8
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+.|-. .| .-...+|.|.+ ..|++|++|||+|..++..-. -..+.....+||+|+.
T Consensus 44 r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~c------------lsiv~~a~~~gY~vas 102 (270)
T KOG4627|consen 44 RVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMC------------LSIVGPAVRRGYRVAS 102 (270)
T ss_pred chhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhcc------------cchhhhhhhcCeEEEE
Confidence 455555543 22 33345676643 268999999998776542221 1234456789999998
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNR 796 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~ 796 (958)
+.| +.. ...+...+.+.++...++|+.+... +.+++.+.|||.|+.+++.+.++. .+++.+++..+|+|+.
T Consensus 103 vgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 103 VGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred ecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 444 222 1223467888999999999998632 456799999999999999988864 3589999999999873
Q ss_pred CC-CCCCcccccchhhhcHHHHHhcCc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 797 TL-TPFGFQNEDRTLWEATSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 797 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.. ....+ ...+.-..+.....|+ +.....++.|+||+.+++|.-- ++++.+.+...++++ .+..|++-+
T Consensus 175 ~EL~~te~---g~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espk--lieQnrdf~~q~~~a----~~~~f~n~~ 245 (270)
T KOG4627|consen 175 RELSNTES---GNDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPK--LIEQNRDFADQLRKA----SFTLFKNYD 245 (270)
T ss_pred HHHhCCcc---ccccCcccchhhhcCccHHHhcCceeeeeEeeecccCcH--HHHhhhhHHHHhhhc----ceeecCCcc
Confidence 21 10000 0000011111222233 1234567899999999999764 488999999988874 788899988
Q ss_pred ccC
Q 002164 875 HGY 877 (958)
Q Consensus 875 H~~ 877 (958)
|.-
T Consensus 246 hy~ 248 (270)
T KOG4627|consen 246 HYD 248 (270)
T ss_pred hhh
Confidence 963
No 168
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=5.8e-09 Score=103.72 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=69.0
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-----CceEEEeccCCccccCcccccccccCcceeee
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-----~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
..+..++|||+.++++.++.+ +.+.+||.+ +..++.|...+.. . ......+-.++.
T Consensus 279 saV~~~aFsn~S~r~vtvSkD-------------G~wriwdtdVrY~~~qDpk~Lk~g~~p----l--~aag~~p~RL~l 339 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKD-------------GKWRIWDTDVRYEAGQDPKILKEGSAP----L--HAAGSEPVRLEL 339 (420)
T ss_pred hheeeeeeCCCcceeEEEecC-------------CcEEEeeccceEecCCCchHhhcCCcc----h--hhcCCCceEEEe
Confidence 667899999999999988844 478888876 3344444333211 0 011123457899
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeeecCCceEEEEE
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~ 474 (958)
||.|+.++.. ....|.++.. -+|+....+. -....+..++|++||++|+...
T Consensus 340 sP~g~~lA~s--------------~gs~l~~~~s--e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 340 SPSGDSLAVS--------------FGSDLKVFAS--EDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCCcEEEee--------------cCCceEEEEc--ccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 9999998873 3334555553 2343333332 2355678899999999998764
No 169
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.07 E-value=2.3e-09 Score=123.92 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=80.7
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 356789999999999999864 33222222 48999886 2 3345664 23
Q ss_pred CcccceeecCCCCeEEEEEeecc---ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.....|+|||||++|+|+.+... ....++..+||++++++|+.++ ..+.. +..++|||||+.|++.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35899999999999999864311 1223356799999999988875 22322 7899999999999998
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.4e-09 Score=110.57 Aligned_cols=239 Identities=12% Similarity=0.141 Sum_probs=151.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeec---cCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ---GFP 186 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt---~~~ 186 (958)
++....|+|+|+..+|++.+ . .-+|.||+.+ .+...+. +..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~r-------------------------r-------ky~ysyDle~----ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGR-------------------------R-------KYLYSYDLET----AKVTKLKPPYGVE 302 (514)
T ss_pred ccceeeecCCCceEEEeccc-------------------------c-------eEEEEeeccc----cccccccCCCCcc
Confidence 56778899999977666653 0 2478999865 3333333 222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.........||||+.||+... .+.|+++...+++.. +... +++.+..+.|+.||+.|+...
T Consensus 303 -~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli--~s~K---ieG~v~~~~fsSdsk~l~~~~---- 363 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELI--TSFK---IEGVVSDFTFSSDSKELLASG---- 363 (514)
T ss_pred -cchhheeEecCCCCeEEEccc---------CceEEeehhhhhhhh--heee---eccEEeeEEEecCCcEEEEEc----
Confidence 125666788999999999543 679999998888753 2222 223378999999998888661
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPD 342 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpD 342 (958)
+++++|++|+ .. -.++.... -.-++++.|++
T Consensus 364 ---------------------------------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 364 ---------------------------------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred ---------------------------------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 4568999999 44 33333333 33368899999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEecc----CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTD----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~----~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|+++|..++. +=+-|||.+ ++.++++.. ++.....+.++.|+||++.++...+
T Consensus 399 g~ylA~GS~~-------------GiVNIYd~~s~~~s~~PkPik~----------~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 399 GSYLATGSDS-------------GIVNIYDGNSCFASTNPKPIKT----------VDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred CceEEeccCc-------------ceEEEeccchhhccCCCCchhh----------hhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999988743 256677654 334444433 2233356789999999998887432
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
. ..+.+.++.+ |.-+ .-.-.. ..-+.+..++|||.|.++++....+ +..||.+
T Consensus 456 ~-----------~knalrLVHv-PS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g--rv~l~kL 511 (514)
T KOG2055|consen 456 V-----------KKNALRLVHV-PSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG--RVHLFKL 511 (514)
T ss_pred c-----------cccceEEEec-ccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCC--ceeeEee
Confidence 2 2345555554 1100 000011 1123355689999999999874333 2667765
No 171
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.06 E-value=3.5e-08 Score=97.78 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=173.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++....|+|||..+|....+ ..|++|++-+| ......++++ .+
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~gd--ceN~~~lkgH--sg 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVYGD--CENFWVLKGH--SG 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEecccc--ccceeeeccc--cc
Confidence 46668899999998887765 58999998443 3556667664 35
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.+||.+|+-+.. ...|+.||+++|+..+-....... +..+.-+.-|-.++.+.
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sg------- 151 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSG------- 151 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEec-------
Confidence 7999999999999988653 679999999999876654444332 44444344455555541
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
. ...++-++|. ..+..++.+. ...+.+.|.-++..+.
T Consensus 152 --------------------------------s---------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 152 --------------------------------S---------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred --------------------------------C---------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 0 1245666676 5544444433 6778899998888876
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
... .+++|.+||+..+...-+... ...-+..+..||+|..+.-.
T Consensus 191 sgg-------------Idn~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGG-------------IDNDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred ecc-------------ccCceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 554 245899999975554433321 11345678899999987652
Q ss_pred ccccCCeEEEEeCCCCCCCCc-eEEEe-ecc----ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGP-EILHK-LDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~~-~~~----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
+....+.+||..|...++. ..+.. ... ..-..+|||+++.+-+.+.+. .+|++|..+. ...-....
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 4566788888756555444 33322 111 223479999999998776433 4788886662 22222233
Q ss_pred CCccccCCCCCCceEeccCCceEEEEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3333222 66888887776654
No 172
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.06 E-value=5e-09 Score=115.07 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC-----Ccc----c-------
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE----A------- 731 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G-----~~~----~------- 731 (958)
+++|+||+.||-. + +...+...+..||++||+|++++.+|..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg-----------g----~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG-----------G----SRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC-----------c----chhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3499999999942 1 2223446678999999999998887754311 000 0
Q ss_pred ------------c------hhhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 002164 732 ------------N------DRFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 732 ------------~------~~~~~~~~~D~~~av~~l~~~--------------------~~~d~~~i~l~G~S~GG~~a 773 (958)
. .........|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 0 011223367888888888641 23567899999999999999
Q ss_pred HHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHH
Q 002164 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (958)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (958)
+.++.+. .+|+++|+..|-. +.- .+ .....++.|+|+|+.+. ..- ..+..+
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~--------~Pl------~~----------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM--------FPL------GD----------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-----------TTS-------G----------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc--------cCC------Cc----------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999988 6899999887621 100 00 00134678999998885 432 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCC------Cc------------cc----HHHHHHHHHHHHHHhhccC
Q 002164 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ES----IMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~------~~------------~~----~~~~~~~i~~fl~~~l~~~ 901 (958)
+.+ +...+....++.+.|..|.-. .+ .+ .....+.+++||++||...
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~~ 362 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGLH 362 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333 223445678889999999521 00 01 1334456899999998744
No 173
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.05 E-value=1.3e-08 Score=108.21 Aligned_cols=191 Identities=24% Similarity=0.270 Sum_probs=118.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (958)
.....|+++||+|+++|| .|.|..+.........+-|...|+..+... +.-...+++++|+|.||..+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 445678899999999665 455553333222334444555555444332 32234689999999999999888754
Q ss_pred --CCCc---eeEEEEeccCCCCCCC-------CC---------C----ccccc-----------chh-------------
Q 002164 780 --APHL---FCCGIARSGAYNRTLT-------PF---------G----FQNED-----------RTL------------- 810 (958)
Q Consensus 780 --~p~~---~~a~v~~~~~~~~~~~-------~~---------~----~~~~~-----------~~~------------- 810 (958)
.|++ +.++++.+++.|.... .+ + +.... ...
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 3554 6788887776552100 00 0 00000 000
Q ss_pred ----------------------hhcH---HHHHhcCc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-C
Q 002164 811 ----------------------WEAT---STYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (958)
Q Consensus 811 ----------------------~~~~---~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (958)
..++ ..+.+.+. ...-...+.|++|.||..|..|| +....++++.+...| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 0000 00111111 00011235799999999999999 999999999999999 7
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 864 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++++..+++.+|.... .......++||...+.+.+
T Consensus 252 ~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAA----FASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhh----hcCcHHHHHHHHHHHCCCC
Confidence 9999999999997532 1224567899999987654
No 174
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9.9e-08 Score=95.65 Aligned_cols=251 Identities=10% Similarity=0.071 Sum_probs=154.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+.++.||+||..++..+.+ ..|.|++... | .+.+.+.. ...
T Consensus 16 ~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~~-g--~~~~ti~s--kky 57 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSLS-G--KQVKTINS--KKY 57 (311)
T ss_pred ceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcCC-C--ceeeEeec--ccc
Confidence 57789999999999986654 3688998743 3 33444432 112
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.-....+.+.++ .++..|..+++.+.+-.+...+.... +.++.-+|-++.+..++
T Consensus 58 G~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred cccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEecc-------
Confidence 5677778777777887653 34678999999998888887766654 77888999887777551
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....|.++|+ ..+-+-+-....-.-.+++|.|=.+|.
T Consensus 120 ------------------------------------------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 120 ------------------------------------------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred ------------------------------------------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 1123444454 332222211122234689999966666
Q ss_pred EeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
.... ..|.+||+.. +.+........ ........+.|||||+.|++.
T Consensus 158 ~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls---------- 205 (311)
T KOG1446|consen 158 ANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS---------- 205 (311)
T ss_pred ecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE----------
Confidence 5522 2788999872 22222111110 011234678999999999996
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccc---cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
...+.++++|+ .+|......+..... -....|+|||+.|+..++++. ..+|.+ +++ .....+..
T Consensus 206 ---T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~--i~vw~~--~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ---TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT--IHVWNL--ETG--KKVAVLRG 272 (311)
T ss_pred ---eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc--EEEEEc--CCC--cEeeEecC
Confidence 34556899996 666544444322221 245789999999887765443 455554 553 34444444
No 175
>PRK05855 short chain dehydrogenase; Validated
Probab=99.05 E-value=2e-09 Score=129.00 Aligned_cols=213 Identities=14% Similarity=0.103 Sum_probs=121.3
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|..++...+-++ ..|.||++||.+.... .| ......| +.||.|++ +|.+
T Consensus 8 ~~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~Vi~---~D~~ 60 (582)
T PRK05855 8 VSSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNHE-----------VW----DGVAPLL-ADRFRVVA---YDVR 60 (582)
T ss_pred EeeCCEEEEEEEcCCC--------CCCeEEEEcCCCchHH-----------HH----HHHHHHh-hcceEEEE---ecCC
Confidence 3458888887665321 1578999999642211 11 1233344 68999999 6666
Q ss_pred CCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCC-CC-
Q 002164 725 GEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR- 796 (958)
Q Consensus 725 G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-~~- 796 (958)
|+|.+.... .......+|+.++++.+. . ..++.|+||||||.+++.++.+. +.++..++..++.. +.
T Consensus 61 G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~ 135 (582)
T PRK05855 61 GAGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHV 135 (582)
T ss_pred CCCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHH
Confidence 888775422 124566777777777642 1 23599999999999988777652 23344333332211 00
Q ss_pred ------CC---CCCCc--------c----------c---------ccchhhh------------------------cHHH
Q 002164 797 ------TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATST 816 (958)
Q Consensus 797 ------~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~ 816 (958)
.. .+..+ . . .....+. ....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (582)
T PRK05855 136 GFWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKL 215 (582)
T ss_pred HHHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHH
Confidence 00 00000 0 0 0000000 0000
Q ss_pred HHh----cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002164 817 YVE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (958)
Q Consensus 817 ~~~----~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 892 (958)
+.. ........++++|+|+++|++|..+| +.....+.+.+. ..++++++ +||... .+....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~ 287 (582)
T PRK05855 216 YRANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAE 287 (582)
T ss_pred HHhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHH
Confidence 000 00001233478999999999999998 777776654433 24666666 589874 5666778888999
Q ss_pred HHHHh
Q 002164 893 WLQKY 897 (958)
Q Consensus 893 fl~~~ 897 (958)
|+.+.
T Consensus 288 fl~~~ 292 (582)
T PRK05855 288 FVDAV 292 (582)
T ss_pred HHHhc
Confidence 99874
No 176
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.05 E-value=1.8e-08 Score=97.76 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=124.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|.+|++.. ++...-+. .........|||||+++++... ...|-.+|..+-+...-.....
T Consensus 87 k~ir~wd~r~----~k~~~~i~--~~~eni~i~wsp~g~~~~~~~k---------dD~it~id~r~~~~~~~~~~~~--- 148 (313)
T KOG1407|consen 87 KTIRIWDIRS----GKCTARIE--TKGENINITWSPDGEYIAVGNK---------DDRITFIDARTYKIVNEEQFKF--- 148 (313)
T ss_pred ceEEEEEecc----CcEEEEee--ccCcceEEEEcCCCCEEEEecC---------cccEEEEEecccceeehhcccc---
Confidence 3788999865 33332222 2235678899999999999653 4567777765543322211111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
.+..+.|.-++..++.+ ... +.-+|..+..=
T Consensus 149 --e~ne~~w~~~nd~Fflt-~Gl----------------------------------------------G~v~ILsypsL 179 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLT-NGL----------------------------------------------GCVEILSYPSL 179 (313)
T ss_pred --eeeeeeecCCCCEEEEe-cCC----------------------------------------------ceEEEEecccc
Confidence 15578899666655544 110 11122222211
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccC
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
..+..|..+ .+-..+.|+||||++|..+.+. -+.+||++.= -.|.++.+. ..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~GsADA-------------lvSLWD~~ELiC~R~isRld-------------wp 233 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------------LVSLWDVDELICERCISRLD-------------WP 233 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEeeccccc-------------eeeccChhHhhhheeecccc-------------Cc
Confidence 112223333 4556788999999999988553 6889998732 233344332 56
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++.++||.||+.|+-. ++...|=+..+ .+|.+..++ ..++....++|.|..-.|+|+..+..
T Consensus 234 VRTlSFS~dg~~lASa-------------SEDh~IDIA~v--etGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASA-------------SEDHFIDIAEV--ETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eEEEEeccCcceeecc-------------CccceEEeEec--ccCCeEEEe-eccCCceeEEecCCCceeeEEecCCC
Confidence 7899999999998872 33333334443 244444444 34555677999999999999986543
No 177
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=1.6e-07 Score=103.50 Aligned_cols=253 Identities=9% Similarity=0.080 Sum_probs=129.1
Q ss_pred eEEEEEc--C-CeeeecCC----CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEe---cc
Q 002164 315 QLVLVSL--D-GTVKEIGP----PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVREL---CD 383 (958)
Q Consensus 315 ~l~~~~~--~-g~~~~l~~----~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l---~~ 383 (958)
.|..+.+ + |..+.+.. +.....++++|||++|++..-. .+.+.+++++. +..... ..
T Consensus 63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~------------~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG------------GGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSEEEEEEEEEE
T ss_pred CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc------------CCeEEEEEccCCcccceeeeecc
Confidence 3444444 3 65554432 2344578899999999887632 35888888874 333332 11
Q ss_pred CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----cccC
Q 002164 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----LRYG 459 (958)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----~~~~ 459 (958)
+.... |............+.|+|||+.+++. + -+.+.|++++.+. .+++........ ..-+
T Consensus 131 ~~g~g--~~~~rq~~~h~H~v~~~pdg~~v~v~-d-----------lG~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 131 HEGSG--PNPDRQEGPHPHQVVFSPDGRFVYVP-D-----------LGADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp SEEEE--SSTTTTSSTCEEEEEE-TTSSEEEEE-E-----------TTTTEEEEEEE-T-TS-TEEEEEEEECSTTSSEE
T ss_pred cCCCC--CcccccccccceeEEECCCCCEEEEE-e-----------cCCCEEEEEEEeC-CCceEEEeeccccccCCCCc
Confidence 11110 00000111334678999999988763 1 2345787777521 222333321111 1234
Q ss_pred ceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEE
Q 002164 460 GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (958)
Q Consensus 460 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 539 (958)
.+.|+|||++++...+..+ ...++.++...+..+....................+.+||||++|+.....
T Consensus 196 h~~f~pdg~~~Yv~~e~s~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------- 265 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSN-TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------- 265 (345)
T ss_dssp EEEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------
T ss_pred EEEEcCCcCEEEEecCCCC-cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------
Confidence 5899999998777654432 244444443343111111111111111111111227789999988776532
Q ss_pred EccCCCCCCCCCCeEEEEEC--CCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002164 540 LNGNGATPEGNIPFLDLFDI--NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (958)
Q Consensus 540 ~~~~~~~~~~~~~~L~~~dl--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~ 617 (958)
...|.++++ ++|+.+.+..-... -.... ..++++||+.+++..+.... -.+|.+|..
T Consensus 266 -----------~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr-------~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~ 324 (345)
T PF10282_consen 266 -----------SNSISVFDLDPATGTLTLVQTVPTG--GKFPR-------HFAFSPDGRYLYVANQDSNT-VSVFDIDPD 324 (345)
T ss_dssp -----------TTEEEEEEECTTTTTEEEEEEEEES--SSSEE-------EEEE-TTSSEEEEEETTTTE-EEEEEEETT
T ss_pred -----------CCEEEEEEEecCCCceEEEEEEeCC--CCCcc-------EEEEeCCCCEEEEEecCCCe-EEEEEEeCC
Confidence 224666666 55666654321110 00011 25789999988887665443 457778888
Q ss_pred CCCeeEee
Q 002164 618 DKKSCQIT 625 (958)
Q Consensus 618 ~g~~~~Lt 625 (958)
+|..+.+.
T Consensus 325 tG~l~~~~ 332 (345)
T PF10282_consen 325 TGKLTPVG 332 (345)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEec
Confidence 88877665
No 178
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.04 E-value=1.3e-08 Score=117.42 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=73.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....||||+.+++-++- ...|.+|+..+.+..+++...... +..+.|-|=|++|+..+
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASqs------ 190 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQS------ 190 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeeec------
Confidence 57899999999999988653 668889998888766666555543 77899999999999662
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-------ccccccccCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-------~~~~~~~~Sp 341 (958)
.+ +.-.+|...--|-.+.++.+ ..+..+.|||
T Consensus 191 ---------------dD--------------------------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 191 ---------------DD--------------------------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred ---------------CC--------------------------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 11 12224443224555555543 3467899999
Q ss_pred CCcEEEEEee
Q 002164 342 DEKYILISSI 351 (958)
Q Consensus 342 DGk~l~~~~~ 351 (958)
||++|+....
T Consensus 230 DG~~las~nA 239 (942)
T KOG0973|consen 230 DGHHLASPNA 239 (942)
T ss_pred CcCeecchhh
Confidence 9999987653
No 179
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.02 E-value=8.4e-08 Score=105.49 Aligned_cols=307 Identities=15% Similarity=0.072 Sum_probs=147.9
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.+.|||||+++.....+ +.|.++|+.+ + ...+++ ..+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~-~--~~v~~i---~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT-G--KVVATI---KVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS-S--SEEEEE---E-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc-c--cEEEEE---ecCCCcc
Confidence 35789999997776543 3678888854 1 223333 3455678
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc---ccccccceEEecCCeEEEEEecCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~---~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
..++||||++|+.... ...++.++|.++.+..+........ ....+..+.-+|+...+++...
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk------ 147 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK------ 147 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc------
Confidence 8999999999876543 2568999999887765543221100 0001234445666664444310
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCCccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDGk~ 345 (958)
...++|++|. +.+ .+.+..+.......|+|||++
T Consensus 148 ------------------------------------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 148 ------------------------------------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ------------------------------------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ------------------------------------------cCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 2467999997 442 223322234457789999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++...+.. +.+-++|.+++....+.... ....|....+...-..++.|.-.+........-
T Consensus 186 ~~va~~~s------------n~i~viD~~~~k~v~~i~~g-~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i------ 246 (369)
T PF02239_consen 186 FLVAANGS------------NKIAVIDTKTGKLVALIDTG-KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI------ 246 (369)
T ss_dssp EEEEEGGG------------TEEEEEETTTTEEEEEEE-S-SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE------
T ss_pred eeeccccc------------ceeEEEeeccceEEEEeecc-ccccccccccccCCCcceEEeeccccceecccc------
Confidence 98876542 37888998876655443221 100010000000111234454433322221110
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
..+.+.+++. .+-+..+++...... ..+.-+||+++|+.....+.....|.++|..+. +...........
T Consensus 247 -----g~~~v~v~d~--~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~~ 316 (369)
T PF02239_consen 247 -----GTDPVSVHDD--YAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPGK 316 (369)
T ss_dssp -----E--TTT-STT--TBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT-
T ss_pred -----cCCccccchh--hcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCCC
Confidence 0111112221 112223334322222 456779999999887322222357999998774 211111111110
Q ss_pred ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
..-++.|++||+++++...+. ...|.++|.++.+...-
T Consensus 317 -----~~~h~ef~~dG~~v~vS~~~~-------------------~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 317 -----RVVHMEFNPDGKEVWVSVWDG-------------------NGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE---------------------TTEEEEEETTTTEEEEE
T ss_pred -----cEeccEECCCCCEEEEEEecC-------------------CCEEEEEECCCcEEEEE
Confidence 011278999999988876321 11699999988765443
No 180
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=8.6e-07 Score=95.08 Aligned_cols=287 Identities=14% Similarity=0.111 Sum_probs=144.1
Q ss_pred ceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec-CCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP-LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 219 ~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
+.|+++|.++++.......... ... ..||||+.|+.+.. -.++.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~----------------------------- 71 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIA----------------------------- 71 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEeccccccc-----------------------------
Confidence 7899999998876544433332 123 48999999998721 00110
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCce
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ 367 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~ 367 (958)
..+ ....|-++|. +++. ..|.-+ .....+++|||||+|++.... + ...
T Consensus 72 --~G~---------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p----------~~~ 129 (352)
T TIGR02658 72 --RGK---------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-P----------SPA 129 (352)
T ss_pred --cCC---------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-C----------CCE
Confidence 000 2245778887 6643 334322 122478999999999877522 1 247
Q ss_pred eEEEeccCceEEE-eccCCcc-ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 368 VGVWTTDGIFVRE-LCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 368 i~l~d~~~~~~~~-l~~~~~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
+.++|+.+++... +.. +.. ...+. ..........||+.+.+..+. .+....-
T Consensus 130 V~VvD~~~~kvv~ei~v-p~~~~vy~t------~e~~~~~~~~Dg~~~~v~~d~------------~g~~~~~------- 183 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDV-PDCYHIFPT------ANDTFFMHCRDGSLAKVGYGT------------KGNPKIK------- 183 (352)
T ss_pred EEEEECCCCcEEEEEeC-CCCcEEEEe------cCCccEEEeecCceEEEEecC------------CCceEEe-------
Confidence 8899998665433 322 110 00000 011122333444443332110 1111100
Q ss_pred CCceEEEee--ccccCceeeec-CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc----CCccccCCCC-CCceEe
Q 002164 446 EGPEILHKL--DLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR----SSEDVYSDPG-SPMMRR 517 (958)
Q Consensus 446 ~~~~~l~~~--~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~ 517 (958)
...+... +.-...+.|++ ||++++.+ .. ..|+.+|+.+........+.. .....+...+ .+ +++
T Consensus 184 --~~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~ 255 (352)
T TIGR02658 184 --PTEVFHPEDEYLINHPAYSNKSGRLVWPT-YT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAY 255 (352)
T ss_pred --eeeeecCCccccccCCceEcCCCcEEEEe-cC----CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEE
Confidence 0011111 11123456677 77655544 33 359999976642222111111 0000111111 22 678
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCE
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLK 597 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 597 (958)
+|||++++...... ...+......+|+++|+++++...-.....+ .. ..++|+||+.
T Consensus 256 ~~dg~~lyV~~~~~-----------~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-----~~-------~iavS~Dgkp 312 (352)
T TIGR02658 256 HRARDRIYLLADQR-----------AKWTHKTASRFLFVVDAKTGKRLRKIELGHE-----ID-------SINVSQDAKP 312 (352)
T ss_pred cCCCCEEEEEecCC-----------ccccccCCCCEEEEEECCCCeEEEEEeCCCc-----ee-------eEEECCCCCe
Confidence 88888877644211 0000111224799999999887765543322 12 2468999994
Q ss_pred EEEEEecCCCCceEEEEECCCCCe
Q 002164 598 ILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 598 l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
+++..... ...+.++|..+++.
T Consensus 313 ~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 313 LLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred EEEEeCCC--CCcEEEEECcCCeE
Confidence 44444432 24588999888753
No 181
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.02 E-value=1.9e-07 Score=95.01 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=170.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..++++|+-+++|....+ .-.++|++.+ | ...-+++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD---------------------------------D~AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD---------------------------------DLAFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC---------------------------------ceEEEEEccC-C--cceeEecCCC--C
Confidence 56678888877776655443 3458999854 3 2456677643 5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....||-||.+||. ++=...|.++...+|..+.....+... +..+.|.|-+.+|++..
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG~------- 167 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAGS------- 167 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEeec-------
Confidence 7999999999999998 334567777777777665444323222 67889999998888761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....+|.+.+ ++.. +.+..+ ...+.-.|.||||+|
T Consensus 168 ------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 168 ------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ------------------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 2355888888 6444 444433 667778899999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCc--------eEEE
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST--------LYWA 417 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l--------~~~~ 417 (958)
+....+ +.|.+|++.++.+ ..++.....+..+..++. .+...+.=+.+|... +...
T Consensus 206 ~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~--~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 206 LTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNL--AGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred EEEecC-------------ceEEEEecCCCceeEEecccccCcCCcccccc--ccceeEeccCCccEEEEccccceEEEe
Confidence 988743 4899999986543 334422211111111110 000111111122111 1110
Q ss_pred Ee---------ccCCCccc-------------ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 418 ET---------QDGGDAKV-------------EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 418 ~~---------~~~~~~~~-------------~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.. .+.....+ -.+-.+.|.+||. ...+.|.+-.+...+..+.|-+ ..+|+...-
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeecc
Confidence 00 00000000 1123457888885 5556666656666678889988 556655442
Q ss_pred ccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+ ..|+.+|..+| ..+.....+...++. ++.+||++.++..+
T Consensus 347 -~---g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 347 -N---GKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred -C---ceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 2 35777887775 444455555555554 78899998877665
No 182
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.02 E-value=5.9e-09 Score=103.85 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=82.9
Q ss_pred hcceEEEEEc-CCeeeecCC--CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccc
Q 002164 312 ATTQLVLVSL-DGTVKEIGP--PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~--~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~ 388 (958)
+...||.++. +.....+.- .+.+.+++|||+|+.+++.... .+..+.+||+++.....+..
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~----- 100 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGT----- 100 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecC-----
Confidence 5677999988 555555533 2568999999999999887632 23489999998655544432
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCC
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDS 467 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg 467 (958)
.....+.|||+|+.+++..-. ...+.|.+||. . +.+.+.. .......+.|||||
T Consensus 101 ----------~~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 101 ----------QPRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred ----------CCceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcCCC
Confidence 123468999999999884110 22456889996 3 3344422 22345678999999
Q ss_pred ceEEEEE
Q 002164 468 LALVYES 474 (958)
Q Consensus 468 ~~l~~~~ 474 (958)
++|+.+.
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999875
No 183
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.99 E-value=3.9e-09 Score=108.54 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=76.8
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHH
Q 002164 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 702 ~~~~~~la~~G~~vl~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
...+..+...||.++.+.... +.|+|.+ .....++|+.++|+||+... .-..++|+|+|||-|..-++.++.
T Consensus 53 ~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~ 127 (303)
T PF08538_consen 53 PDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLS 127 (303)
T ss_dssp HHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHh
Confidence 345555656899999865544 4566654 45788999999999999973 235679999999999999999998
Q ss_pred hCC-----CceeEEEEeccCCCCCCCCCCccc-c-c-------------------------chhh-hcH-----------
Q 002164 779 HAP-----HLFCCGIARSGAYNRTLTPFGFQN-E-D-------------------------RTLW-EAT----------- 814 (958)
Q Consensus 779 ~~p-----~~~~a~v~~~~~~~~~~~~~~~~~-~-~-------------------------~~~~-~~~----------- 814 (958)
+.. ..+.++|+.+|+.|.+........ . . ...+ +.|
T Consensus 128 ~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s 207 (303)
T PF08538_consen 128 SPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLAS 207 (303)
T ss_dssp H-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-
T ss_pred ccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccC
Confidence 652 579999999999997654432211 0 0 0000 111
Q ss_pred ----HHHHhc-----CcccccCCCCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCc----EEEEEeCCCCccCCCc
Q 002164 815 ----STYVEM-----SPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGAL----CRLVILPFESHGYAAR 880 (958)
Q Consensus 815 ----~~~~~~-----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~----~~~~~~p~~~H~~~~~ 880 (958)
+.|... .......++++|+|++.+++|..|| ... -.++.++++..-.+ ..-.++||++|.+...
T Consensus 208 ~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~ 285 (303)
T PF08538_consen 208 PGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGP 285 (303)
T ss_dssp SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------------------------------
T ss_pred CCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--cccccccccccccccccccccccccccccccccccccc
Confidence 000000 0012456778899999999999998 443 34566666654322 2245899999999754
Q ss_pred cc---HHHHHHHHHHHH
Q 002164 881 ES---IMHVLWETDRWL 894 (958)
Q Consensus 881 ~~---~~~~~~~i~~fl 894 (958)
.. .+.+.+++..||
T Consensus 286 ~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 286 SQAEAREWLVERVVKFL 302 (303)
T ss_dssp -----------------
T ss_pred ccccccccccccccccC
Confidence 43 235566666665
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.99 E-value=9.7e-08 Score=108.71 Aligned_cols=269 Identities=16% Similarity=0.066 Sum_probs=153.1
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
....+||||++|||..+.. +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc-
Confidence 3578999999999988654 677889999999998653211 01110 2249999999999998433211100
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee--eecCCC---cc-ccccccCCCCc
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDEK 344 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~l~~~---~~-~~~~~~SpDGk 344 (958)
.. ....+||+..+ ++.. +.|... .. ...+..|+||+
T Consensus 197 ------------------------------~~-------~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 ------------------------------DS-------GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ------------------------------CC-------GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred ------------------------------cC-------CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 00 02356888888 6533 355543 22 45778999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCc-----eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
+|++.+..... ..++++.+++.+ ..+.|..... +.. ......|..+++.++.
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~-~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVE-YYVDHHGDRLYILTND 296 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-E-EEEEEETTEEEEEE-T
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceE-EEEEccCCEEEEeeCC
Confidence 99988765421 248999998864 4455443110 111 1122226666665552
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCC---ce-EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC-CCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVA 494 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-~~~~~ 494 (958)
. ..+..|+.+++ +... .. .+........--.++..+.+|++....+. ..+|+++++. +. .
T Consensus 297 ~---------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 297 D---------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLDDGK--E 361 (414)
T ss_dssp T----------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT-TE--E
T ss_pred C---------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEECCCCc--E
Confidence 1 34567888886 3222 22 34444333333345566778887766665 3789999998 42 2
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
...+.......+.+ ++..+++..+.|..... -..+.+|.+|+++++.+.+.
T Consensus 362 ~~~~~~p~~g~v~~------~~~~~~~~~~~~~~ss~-----------------~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 362 SREIPLPEAGSVSG------VSGDFDSDELRFSYSSF-----------------TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEESSSSSEEEE------EES-TT-SEEEEEEEET-----------------TEEEEEEEEETTTTCEEEEE
T ss_pred EeeecCCcceEEec------cCCCCCCCEEEEEEeCC-----------------CCCCEEEEEECCCCCEEEEE
Confidence 22222222221111 33456666666665321 12357999999999988765
No 185
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.99 E-value=9.8e-09 Score=113.52 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+.++++|+|+++|+.|..+| +..++++.+.++..+..++++++++ .||... .+....+.+.+.+||.+
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999999 8999999998887666789999985 899863 45667778888888764
No 186
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=101.66 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=110.4
Q ss_pred CcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 712 GFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
-+.|++ -|-+|||.+..++.- .+-..+|...|++.+... +-+++-|+|+|-||..|+.+|+++++.+...|.
T Consensus 71 ~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 71 QVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred ceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 488888 555688888655332 334578889999988876 446999999999999999999999988777666
Q ss_pred eccCCCCCC-CCCC---------cccccc-------------hhhhcH----HHHHhcCc----ccccCCCCCCEEEEee
Q 002164 790 RSGAYNRTL-TPFG---------FQNEDR-------------TLWEAT----STYVEMSP----FMSANKLKKPILLVHG 838 (958)
Q Consensus 790 ~~~~~~~~~-~~~~---------~~~~~~-------------~~~~~~----~~~~~~sp----~~~~~~~~~P~Lii~G 838 (958)
.++...... ..+. +....+ ..|..- ..+...-- -..+.++++|+||+||
T Consensus 145 wga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG 224 (277)
T KOG2984|consen 145 WGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHG 224 (277)
T ss_pred ecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeC
Confidence 554321100 0000 001111 112110 11111000 1235688999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+.|+.++ -.+.- +...++. -.++.++|.++|.+. .....++...+.+||++
T Consensus 225 ~kDp~~~--~~hv~-fi~~~~~---~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 225 GKDPFCG--DPHVC-FIPVLKS---LAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CcCCCCC--CCCcc-chhhhcc---cceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 9999997 44443 3333333 258889999999985 44556777788888865
No 187
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.98 E-value=1.4e-08 Score=131.94 Aligned_cols=199 Identities=15% Similarity=0.207 Sum_probs=119.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----------hhHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (958)
.|.||++||..... ..| ......| ..+|.|+. .+.+|+|.+.... ......
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 57899999964221 111 1223333 45699999 5566777764321 112233
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC------------------CC
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------------------PF 801 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~------------------~~ 801 (958)
.+++.+.++ + .+.+++.|+||||||.+++.++.++|++++++|++++....... ..
T Consensus 1432 a~~l~~ll~----~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIE----H--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHH----H--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 333333333 2 23468999999999999999999999999999988753211100 00
Q ss_pred Cccc-----ccchhhh-------------------cHH----HHHhc------CcccccCCCCCCEEEEeeCCCCCCCCC
Q 002164 802 GFQN-----EDRTLWE-------------------ATS----TYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (958)
Q Consensus 802 ~~~~-----~~~~~~~-------------------~~~----~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (958)
+... .....|. +.. .+... +....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 0000 0000000 000 00000 0112366788999999999998753
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+.++.+.+.... ..++++++|++||... .++...+.+.+.+||.+.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 56677777665420 1268999999999874 567778888999999874
No 188
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.98 E-value=1.4e-08 Score=113.19 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=98.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..+.|+|-|-++|..+. ++.-.+|..+...+.++...... .++-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~-------------D~tArLWs~d~~~PlRifaghls------------DV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASH-------------DQTARLWSTDHNKPLRIFAGHLS------------DVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCC-------------CceeeeeecccCCchhhhccccc------------ccceEEECCccc
Confidence 56778889999976665542 34677888876555444433322 234588999998
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+++- .+.+..+.+||+ ..|..++..+.+...+..++|||+|++|+.....+. ..|| |+.++
T Consensus 549 Y~aT-------------GSsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~--I~iW--Dl~~~ 609 (707)
T KOG0263|consen 549 YVAT-------------GSSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL--IKIW--DLANG 609 (707)
T ss_pred cccc-------------CCCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc--EEEE--EcCCC
Confidence 7764 134556888997 566666666788888999999999999998765443 4455 55553
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.....-.....+++ ++||.||..|+...
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGG 638 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecC
Confidence 233333333555666 89999999888775
No 189
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.3e-07 Score=94.20 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=164.0
Q ss_pred ChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc
Q 002164 99 PPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (958)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~ 178 (958)
|.++.--++.+......||+-|.+||....+ +.+.|||+.+ .+.
T Consensus 14 PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T---~~i 57 (405)
T KOG1273|consen 14 PEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDT---FRI 57 (405)
T ss_pred hHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEccc---cch
Confidence 4555566677777789999999999998875 5789999855 234
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.++.+. ..+....||+||+.|+..++ ...+-+||+-.|.+.+-...+.. +....|.|-.+..
T Consensus 58 ar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~sp-----v~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 58 ARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDSP-----VWGAQWHPRKRNK 121 (405)
T ss_pred hhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccCc-----cceeeeccccCCe
Confidence 55665533 46899999999999998664 56788889887765433222322 5677788755333
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--cc-c
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AV-Y 334 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~-~ 334 (958)
+++..- ...-+++++ ++..+.|... +. .
T Consensus 122 ~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 122 CVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred EEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCccccc
Confidence 333110 011234455 4544444432 11 1
Q ss_pred cc---cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 335 TS---LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 335 ~~---~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.. ..|.+-|++|+..... +.+.+++..+-+...-..... ...+..+.++-.|+
T Consensus 154 ~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKGR 209 (405)
T ss_pred cccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccCc
Confidence 12 2488889999876533 378888877644321111000 03456788999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCC----CCCCceEEEeec-----cccCceeeecCCceEEEEEeccccceE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLD-----LRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+++. .....|..++...+ .++.+....+.. ..-....||-||.+|+.++. ....
T Consensus 210 ~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~---~aHa 273 (405)
T KOG1273|consen 210 FLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA---RAHA 273 (405)
T ss_pred EEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc---ccee
Confidence 88873 22334555554211 112222111111 11134789999999887762 3367
Q ss_pred EEEEcCCCCCCCcEEEeccCC-ccccCCCCCCceEeccCCceEEEE
Q 002164 483 TWVISPGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
||++....| ....+..+.. +.... +.|.|---.|+..
T Consensus 274 LYIWE~~~G--sLVKILhG~kgE~l~D------V~whp~rp~i~si 311 (405)
T KOG1273|consen 274 LYIWEKSIG--SLVKILHGTKGEELLD------VNWHPVRPIIASI 311 (405)
T ss_pred EEEEecCCc--ceeeeecCCchhheee------cccccceeeeeec
Confidence 998887765 3444443333 22222 4566655444443
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.95 E-value=3.8e-09 Score=105.36 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
...|||+|++||... ..+|.+.|.++-+..+|...-.. +..+.|+.|.-.|.+...
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~y--------- 68 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAY--------- 68 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeee---------
Confidence 568999999999976 45889999888776666433221 567889999998887721
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEEEEE
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
....+.++++ .-+ .-.|..+ .+.....||||||+|+.+
T Consensus 69 ---------------------------------------k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 69 ---------------------------------------KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred ---------------------------------------ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 1223455555 322 2345555 778899999999999988
Q ss_pred eecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 429 (958)
+ ++.-+|.+|.+.++....+.... .+...++|.|||+..++...+ |-.+..
T Consensus 110 s------------eF~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~sRr-DCkdyv--- 160 (447)
T KOG4497|consen 110 S------------EFDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILSRR-DCKDYV--- 160 (447)
T ss_pred e------------cceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeeecc-cHHHHH---
Confidence 7 34568999999877655443211 345689999999987775332 221110
Q ss_pred ccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCC
Q 002164 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (958)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (958)
+|..-. +=.-.+.......+..++.|||||..|+.-.+--. ..+|.+.-..| ..+
T Consensus 161 ----~i~~c~----~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 161 ----QISSCK----AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ----HHHhhH----HHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccc-----eeE----------
Confidence 011000 00000000111223467899999999987543222 33444332221 011
Q ss_pred CCCCceEeccCCceEEEEee
Q 002164 510 PGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~~ 529 (958)
+.|||.++.|+.+..
T Consensus 216 -----v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSY 230 (447)
T ss_pred -----EEeccccceEEeecc
Confidence 567887777777664
No 191
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.92 E-value=5.9e-08 Score=112.33 Aligned_cols=178 Identities=15% Similarity=0.225 Sum_probs=113.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..|+.||||+++||+....+ ...+...+||+++. +++.++++.... ...+.|+|||+.|+|......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~--- 419 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNT--- 419 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcc---
Confidence 6789999999999999986553 22346779999997 556688876543 568999999999998832100
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
...+ ... ....+||++++ .|+.++ ...+.+.++.|||||++|+|
T Consensus 420 -------------------~~~v-------~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 420 -------------------VVRV-------IRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred -------------------eEEE-------ecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 0000 000 03468999998 666655 22267899999999999999
Q ss_pred EeecCCccccccCCCCCceeEE---EeccCceEEEeccCC-ccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l---~d~~~~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
... +++++ ...++++ +.|+... ... .......++.|..|++ |+...+
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~~~------ 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVGRS------ 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEEec------
Confidence 982 26776 4444554 4443210 000 0001135688999998 444311
Q ss_pred cccccccCCeEEEEeCCCCCCCCceE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
+....+|.+.+ +|...+.
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12335788875 6655544
No 192
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.92 E-value=2.6e-08 Score=104.88 Aligned_cols=221 Identities=9% Similarity=0.027 Sum_probs=137.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|+||++-.++ .-.|...++ ...+....||++|..++-++- ...|-+||+++|+...-......
T Consensus 237 ~~vklW~vy~~~--~~lrtf~gH--~k~Vrd~~~s~~g~~fLS~sf---------D~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 237 GLVKLWNVYDDR--RCLRTFKGH--RKPVRDASFNNCGTSFLSASF---------DRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred ceEEEEEEecCc--ceehhhhcc--hhhhhhhhccccCCeeeeeec---------ceeeeeeccccceEEEEEecCCC--
Confidence 578999996655 334444443 347899999999999888653 66888999999987544332221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
..-+.+.||+..++++.. ....|..+|.
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 446778899966665500 2345777887
Q ss_pred CCeeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 ~g~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+|+..+-.. . +.+..+.|-++|++++.++++ +.+.+|+........+...+.. .
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-------------ks~riWe~~~~v~ik~i~~~~~-----------h 386 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDD-------------KSVRIWENRIPVPIKNIADPEM-----------H 386 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccC-------------ccEEEEEcCCCccchhhcchhh-----------c
Confidence 776544333 3 678889999999999988854 3788888774332222111111 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-E--EeeccccCceeeecCCceEEEEEec
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L--HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l--~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
....+..+|+|+.++.- +..+.++++.+.+.---..+. . ....+..-.+.|||||++|++....
T Consensus 387 smP~~~~~P~~~~~~aQ-------------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQ-------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhh-------------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 23457788998876652 445566666541111001111 1 1123333458999999999887433
Q ss_pred cccceEEEEEcCCC
Q 002164 477 KTRRTRTWVISPGS 490 (958)
Q Consensus 477 ~~~~~~l~~~~~~~ 490 (958)
..+|.+|..+
T Consensus 454 ----G~v~~wdwkt 463 (503)
T KOG0282|consen 454 ----GKVNFWDWKT 463 (503)
T ss_pred ----ccEEEeechh
Confidence 3577777665
No 193
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.91 E-value=5.9e-07 Score=89.26 Aligned_cols=249 Identities=12% Similarity=0.099 Sum_probs=157.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
+.+....|+|||..+|. +.....|++|++.+...- .+....+ .+..+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEec----
Confidence 57899999999998887 344778999997764332 2222222 277899999999999772
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG 343 (958)
....++.+|. +|+.. +.... .-+.....+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 2245778888 77543 33333 444555555566
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
-.++-+..+ ++++.+||+..++..++.... ....++.|..++..+..-
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 666666533 459999999866543322111 123567788777766541
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+-++.|-+||+ ..+.-...+..+...+..+.-||+|..|...+-+.. .++|.+.+--.......++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--vrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT--VRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccce--EEEEEecccCCCCceEEEeecch
Confidence 34556777874 444444555666667788999999999887665554 66777665544222244554433
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
...-- .-...+|||+++.+.+...+ ..+|+||..+....
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~d---------------------r~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSAD---------------------RFVYVWDTTSRRIL 301 (338)
T ss_pred hhhhh--hcceeeccCCCCcccccccc---------------------ceEEEeecccccEE
Confidence 22110 11226899999998887632 26999998664443
No 194
>COG0627 Predicted esterase [General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=106.59 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=102.5
Q ss_pred HcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---------CCCCCcccccchhhhcH--HHHH
Q 002164 752 RRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEAT--STYV 818 (958)
Q Consensus 752 ~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~ 818 (958)
+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+.+|+.+.. ...|+-..... +|... ..+.
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~w~ 221 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPAWQ 221 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCcccccc
Confidence 3334454 389999999999999999999999999999999998755 22222211111 22111 2345
Q ss_pred hcCcccccCC--------------CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH
Q 002164 819 EMSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884 (958)
Q Consensus 819 ~~sp~~~~~~--------------~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 884 (958)
+++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+...++..|.+. ...
T Consensus 222 ~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~---~w~ 298 (316)
T COG0627 222 ENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWY---FWA 298 (316)
T ss_pred ccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHH---HHH
Confidence 5566555543 44678888999998752013347889999999999999999988899863 345
Q ss_pred HHHHHHHHHHHHhhcc
Q 002164 885 HVLWETDRWLQKYCVS 900 (958)
Q Consensus 885 ~~~~~i~~fl~~~l~~ 900 (958)
..+..++.|+...|..
T Consensus 299 ~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 299 SQLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6678888888887753
No 195
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.90 E-value=1.3e-07 Score=100.26 Aligned_cols=256 Identities=13% Similarity=0.125 Sum_probs=142.3
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~ws 252 (958)
.+.++...+ ..+...++-|.|-+++. +.-...|..||..|-.. ++|-..... .+.+++||
T Consensus 159 hEi~l~hgt--k~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys 223 (641)
T KOG0772|consen 159 HEIQLKHGT--KIVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYS 223 (641)
T ss_pred ceEeccCCc--eEEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeec
Confidence 344554322 37888899999999887 44577888999887543 334332322 27799999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecC
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIG 329 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~ 329 (958)
+.|..|++++..... ++.+.+|..+.. ...+.-|+.|+ .|-.
T Consensus 224 ~Tg~~iLvvsg~aqa------------kl~DRdG~~~~e-------------------~~KGDQYI~Dm~nTKGHi---- 268 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQA------------KLLDRDGFEIVE-------------------FSKGDQYIRDMYNTKGHI---- 268 (641)
T ss_pred CCCCeEEEEecCcce------------eEEccCCceeee-------------------eeccchhhhhhhccCCce----
Confidence 999888776221111 111111111100 01222344444 1222
Q ss_pred CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceE-EEeccCCccccCcccccccccCcceeeee
Q 002164 330 PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 330 ~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
..++..+|.|+.|..+.+... ++.+.+|+++. +.. +.+...+.. +....+..-+|+
T Consensus 269 --a~lt~g~whP~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~--------g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 269 --AELTCGCWHPDNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG--------GKRVPVTSCAWN 326 (641)
T ss_pred --eeeeccccccCcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC--------CcccCceeeecC
Confidence 345677999999988887743 45899999983 322 222221111 112334678999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE----EeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
|||+.|+-- -..+.|-+|+. ..-+..+.-. ......+..+.||+||++|+.-..++. .++
T Consensus 327 rdg~~iAag-------------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKv 390 (641)
T KOG0772|consen 327 RDGKLIAAG-------------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKV 390 (641)
T ss_pred CCcchhhhc-------------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eee
Confidence 999997752 23445666763 0011111111 122336788999999999988766665 566
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.+.--. ++..+...-....... -..||||.+.|+.+.
T Consensus 391 WDLrq~k---kpL~~~tgL~t~~~~t----dc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 391 WDLRQFK---KPLNVRTGLPTPFPGT----DCCFSPDDKLILTGT 428 (641)
T ss_pred eeccccc---cchhhhcCCCccCCCC----ccccCCCceEEEecc
Confidence 6554222 2232222111111111 167999998777664
No 196
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.89 E-value=1.3e-07 Score=96.32 Aligned_cols=272 Identities=12% Similarity=0.141 Sum_probs=156.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+....||.||.+||..-.. +.|.||.+.+ | .....+- ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46788999999999876543 4788998865 2 2333442 1334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.|-+..|++ +.....||.|.+..+...++..+++.. ...-.+.||||+|+....+.....
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 7888999998877777 345779999999885555666555433 456678999999997743221110
Q ss_pred -CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----------cccccc
Q 002164 270 -PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYTSL 337 (958)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----------~~~~~~ 337 (958)
..+...|.- ++.+.++...-- +-.+......+.-....+.+.++. +|++.....+ ....++
T Consensus 217 Wn~ktg~p~~-~~~~~e~~~~~~------~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 217 WNPKTGQPLH-KITQAEGLELPC------ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EecCCCceeE-EecccccCcCCc------cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 000000000 000000000000 000000000111113345556665 6665544431 112233
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
.+.|-...|-..+ ++...++|-|||+....+|.+..++ .++..+.|-+ ..+|+-.
T Consensus 290 e~~~~ss~lpL~A----------~G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~l~t~- 344 (399)
T KOG0296|consen 290 ESIPSSSKLPLAA----------CGSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDYLLTA- 344 (399)
T ss_pred hhcccccccchhh----------cccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cchheee-
Confidence 3333222111111 3345679999999998888887765 4566788887 4444331
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
...+.|+.||+ ..|......+.+...+..++.+||++.++..+.++.
T Consensus 345 ------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 345 ------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 44678999996 566555666777888888999999998888765554
No 197
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.88 E-value=8.8e-08 Score=108.88 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=62.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH----HHHH
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA----NLLA 778 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~----~~a~ 778 (958)
.+...|+++||.|++++ .+|.|.+.....+......++.++++++++. .+.+++.++|||+||.++. .+++
T Consensus 211 Slv~~L~~qGf~V~~iD---wrgpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVIS---WRNPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEE---CCCCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 46778999999999944 4555655333333344556688888888875 3456899999999999852 2344
Q ss_pred hC-CCceeEEEEeccCCC
Q 002164 779 HA-PHLFCCGIARSGAYN 795 (958)
Q Consensus 779 ~~-p~~~~a~v~~~~~~~ 795 (958)
.. +++++.++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 44 678999998887655
No 198
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.7e-07 Score=92.10 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=154.3
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccC--CCCccccccccceEEecCCeEEEEEe
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQ--SPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~--~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
++..+....||.||++||.... ...|.+|+++.=+ +.+-.. .+.+ ....++|+||-+.+++..
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~---------Dr~Ir~w~~~DF~~~eHr~~R~nve~d----hpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISG---------DRSIRLWDVRDFENKEHRCIRQNVEYD----HPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeC---------CceEEEEecchhhhhhhhHhhccccCC----CceEEEECCCcceEEEEE
Confidence 3457899999999999999773 5567777766522 111110 0111 134788999999888773
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc----CCee----eecCC----
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV----KEIGP---- 330 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~----~g~~----~~l~~---- 330 (958)
.. .+.|++|-+ +|.. ..+..
T Consensus 152 ~~------------------------------------------------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~ 183 (420)
T KOG2096|consen 152 KR------------------------------------------------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFE 183 (420)
T ss_pred cc------------------------------------------------CCEEEEEEeeecccCCCCcccccccccccc
Confidence 21 122333332 1210 00000
Q ss_pred --C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee
Q 002164 331 --P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 331 --~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
. ..+.++-..-.+++|+..+.+ .+|-+|++.|.....+...... ....+.|
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavS 237 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVS 237 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeC
Confidence 0 122334445566777666533 4899999998776666543322 2467899
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeC-CCCCCC--C---ceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA-EPVQGE--G---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~g~--~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
|||+.|+... ....+.+|.+ ...+|. + .-+|..+...+...+||+++++++..+.++. .
T Consensus 238 P~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~--w 302 (420)
T KOG2096|consen 238 PDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK--W 302 (420)
T ss_pred CCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc--E
Confidence 9999988741 1112233321 001221 1 2233455666778999999999988776554 7
Q ss_pred EEEEEcCCCCCC-CcEEEecc--CCccccCCCCCC-ceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEE
Q 002164 482 RTWVISPGSKDV-APRILFDR--SSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (958)
Q Consensus 482 ~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (958)
+||..|..-..+ .+..+-.. +....- ++| .+..||.|+.|+.... ..|.++
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag---~~p~RL~lsP~g~~lA~s~g----------------------s~l~~~ 357 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAG---SEPVRLELSPSGDSLAVSFG----------------------SDLKVF 357 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcC---CCceEEEeCCCCcEEEeecC----------------------CceEEE
Confidence 898877644211 12222111 111111 222 2678999998877652 137778
Q ss_pred ECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEe
Q 002164 558 DINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 558 dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
..++|+...-...- .+++. ...+|++||++++...+
T Consensus 358 ~se~g~~~~~~e~~----h~~~I------s~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 358 ASEDGKDYPELEDI----HSTTI------SSISYSSDGKYIATCGD 393 (420)
T ss_pred EcccCccchhHHHh----hcCce------eeEEecCCCcEEeeecc
Confidence 77776654322111 11111 13578999987765444
No 199
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.87 E-value=1.5e-07 Score=118.37 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=125.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCc-CcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av 747 (958)
.|.||++||..... ..|... .......|+++||.|++++. +..+. .... .......+.++.+++
T Consensus 67 ~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~~~~~~~~l~~~i~~l~~~l 132 (994)
T PRK07868 67 GPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--VEGGMERNLADHVVALSEAI 132 (994)
T ss_pred CCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--hHcCccCCHHHHHHHHHHHH
Confidence 47788899964221 112111 11235678899999999663 22111 0010 112233345667777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCCC-CCC-----------c-----------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-PFG-----------F----------- 803 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~-~~~-----------~----------- 803 (958)
+.+.+.. .+++.++||||||.+++.+++.+ +++++.+|.++...|.... +.. +
T Consensus 133 ~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (994)
T PRK07868 133 DTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDI 209 (994)
T ss_pred HHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCC
Confidence 7766553 24799999999999998888754 4589998876655432100 000 0
Q ss_pred cc--------------------------cc-c--------------hhh-hc-----H---HHHHhcCcc----------
Q 002164 804 QN--------------------------ED-R--------------TLW-EA-----T---STYVEMSPF---------- 823 (958)
Q Consensus 804 ~~--------------------------~~-~--------------~~~-~~-----~---~~~~~~sp~---------- 823 (958)
.. .. . .-| .. . ..+...+.+
T Consensus 210 p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~ 289 (994)
T PRK07868 210 PGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQ 289 (994)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCE
Confidence 00 00 0 001 00 0 001110111
Q ss_pred -cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEE-EEeCCCCccC--CCcccHHHHHHHHHHHHHHhhc
Q 002164 824 -MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--AARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 824 -~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~p~~~H~~--~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
..+.++++|+|+++|++|..+| +..+..+.+.+.. .++ .+++++||.. .......+++..+.+||.++-.
T Consensus 290 ~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~ 363 (994)
T PRK07868 290 MVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEG 363 (994)
T ss_pred EcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhcc
Confidence 1357888999999999999998 8888888776543 344 5678899983 3455667888999999999876
Q ss_pred cCCCC
Q 002164 900 SNTAD 904 (958)
Q Consensus 900 ~~~~~ 904 (958)
....+
T Consensus 364 ~~~~~ 368 (994)
T PRK07868 364 DGDKP 368 (994)
T ss_pred CCCCC
Confidence 55443
No 200
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.87 E-value=1.5e-06 Score=92.49 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=186.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++...++||.|+++++.-.. +|.+|.-.. .. .|..+. ..
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~~----~~--~l~~~~-~~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGPS----KA--KLVRFR-HP 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEccccc----hh--heeeee-cC
Confidence 56788999999999876543 455553211 22 222122 23
Q ss_pred cccceeecCCCCeEEEEEeecc------ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~------~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
.+....+||.|++|..-.+..- ...-....++++||.++|....-........ -....+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6788899999999987655331 1111223479999999987654332222110 001257788888777754
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC----Ccccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~----~~~~~~~~~ 339 (958)
-...|+++++++...+..- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 1234777776442222111 156789999
Q ss_pred CCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEE
Q 002164 340 SPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (958)
Q Consensus 340 SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~ 416 (958)
||-|. -|+|-.-.. ...+..+.+|.+-.+ ..+..+-.. ...-.+.|.+.|+.|++.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence 99654 466655322 123456777776632 222212111 112468899999999998
Q ss_pred EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 496 (958)
+.+........ -+...||++++ .+...+........+-.++|+|+++..+..+.... ..+-..++.+.
T Consensus 241 ~~t~~ksnKsy--fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N----- 308 (561)
T COG5354 241 VMTHTKSNKSY--FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN----- 308 (561)
T ss_pred EEEeeecccce--eccceEEEEee---cccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc-----
Confidence 66543111100 12357899885 43333222244566788999999999888775554 34555565552
Q ss_pred EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccc
Q 002164 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (958)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~ 576 (958)
+.+-.+...- .. +.|||.++++++..-+ .....+-+||..+ +...+....+.
T Consensus 309 l~~~~Pe~~r----NT--~~fsp~~r~il~agF~------------------nl~gni~i~~~~~-rf~~~~~~~~~--- 360 (561)
T COG5354 309 LRFYFPEQKR----NT--IFFSPHERYILFAGFD------------------NLQGNIEIFDPAG-RFKVAGAFNGL--- 360 (561)
T ss_pred eEEecCCccc----cc--ccccCcccEEEEecCC------------------ccccceEEeccCC-ceEEEEEeecC---
Confidence 1211111110 01 4589999999886521 0122366677653 33333222211
Q ss_pred ceeEeecCCCccccccccCCEEEEEEecCC
Q 002164 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (958)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~ 606 (958)
+..-+.|||||..+.....+..
T Consensus 361 --------n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --------NTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --------CceEeeccCCceEEEecCCCcc
Confidence 1112579999987777666544
No 201
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.7e-08 Score=99.24 Aligned_cols=220 Identities=20% Similarity=0.203 Sum_probs=124.3
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC----cEE
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FAI 715 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~v 715 (958)
+.+.+.+.-..+....+|+|+++.+.. ++|++++.||-.+.. +... ......+.+.| -++
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~~-------------~g~i-~~~~dsli~~g~i~pai~ 133 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWFR-------------SGRI-PRILDSLIAAGEIPPAIL 133 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHHh-------------cCCh-HHHHHHHHHcCCCCCceE
Confidence 344444443356777899999987644 599999999942211 1111 12233455544 455
Q ss_pred EEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 716 LGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
|.+++.+-.-...... +..+...... +.+=++.+.. .-+.++-+|+|.|+||..+++++.++|++|..+++.+|
T Consensus 134 vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 134 VGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred EecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 5544432111111111 1111112222 2333444442 24567889999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.+.+....- ..-++.. ...+....+.....-++...++.+.. ....+++++.|+..|.++.+..|+|
T Consensus 211 s~~~~~~~~------~~~~~~~---~~l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~G 277 (299)
T COG2382 211 SFWWTPLDT------QPQGEVA---ESLKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYPG 277 (299)
T ss_pred ccccCcccc------ccccchh---hhhhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecCC
Confidence 766432210 0001111 11111112222233233334444444 3557889999999999999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 873 ESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
||... .+...+.++|...+
T Consensus 278 -gHdw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 278 -GHDWA------WWRPALAEGLQLLL 296 (299)
T ss_pred -CCchh------HhHHHHHHHHHHhh
Confidence 99863 33444566665544
No 202
>PTZ00421 coronin; Provisional
Probab=98.86 E-value=3e-07 Score=104.70 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=124.7
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC----Cceeeecc
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL----GQEIEIQG 184 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~----~~~~~lt~ 184 (958)
.+..++||| |++.||..+.+ +.|.+|++...+.. .....+.+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~D---------------------------------gtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASED---------------------------------GTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CEEEEEecCCCccccccCcceEEecC
Confidence 577899999 89988887765 57899998653211 11233433
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
+...+....|+|++..++.+.. ....|.+||+.+++........... +..++|+|||+.|+...
T Consensus 124 --H~~~V~~l~f~P~~~~iLaSgs--------~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~spdG~lLatgs-- 187 (493)
T PTZ00421 124 --HTKKVGIVSFHPSAMNVLASAG--------ADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNLDGSLLCTTS-- 187 (493)
T ss_pred --CCCcEEEEEeCcCCCCEEEEEe--------CCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEECCCCEEEEec--
Confidence 2346888999999765444432 2567899999888765443322222 77899999999888761
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--ccccccccC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--AVYTSLDPS 340 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--~~~~~~~~S 340 (958)
....|.++|+ +++. ..+... .......|+
T Consensus 188 -----------------------------------------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 188 -----------------------------------------------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 2245777787 6643 233322 223457899
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
|++..|+.+.... ..++.|.+||+.... ......... ......+.|++|++.++...
T Consensus 221 ~~~~~ivt~G~s~---------s~Dr~VklWDlr~~~~p~~~~~~d~-----------~~~~~~~~~d~d~~~L~lgg-- 278 (493)
T PTZ00421 221 KRKDLIITLGCSK---------SQQRQIMLWDTRKMASPYSTVDLDQ-----------SSALFIPFFDEDTNLLYIGS-- 278 (493)
T ss_pred CCCCeEEEEecCC---------CCCCeEEEEeCCCCCCceeEeccCC-----------CCceEEEEEcCCCCEEEEEE--
Confidence 9988887654221 124589999987422 111111100 01223467999998776630
Q ss_pred ccCCCcccccccCCeEEEEeC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~ 440 (958)
...+.|.+|++
T Consensus 279 ----------kgDg~Iriwdl 289 (493)
T PTZ00421 279 ----------KGEGNIRCFEL 289 (493)
T ss_pred ----------eCCCeEEEEEe
Confidence 12557888886
No 203
>PTZ00421 coronin; Provisional
Probab=98.85 E-value=1.1e-06 Score=100.03 Aligned_cols=170 Identities=9% Similarity=0.027 Sum_probs=97.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|++..++++.. .++.|.+||+.++... .+..+ ...+..+.|+|||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs------------~DgtVrIWDl~tg~~~~~l~~h-------------~~~V~sla~spdG 180 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAG------------ADMVVNVWDVERGKAVEVIKCH-------------SDQITSLEWNLDG 180 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEe------------CCCEEEEEECCCCeEEEEEcCC-------------CCceEEEEEECCC
Confidence 56788999999754444432 2348999999865432 33221 1346789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+.|+.. +..+.|.+||+ .++.....+..+.. ......|++++..|+...........|.++|+.
T Consensus 181 ~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 181 SLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 977663 44567899996 34433334433332 234578999988877654321111234445554
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
.. ..+....+..... ....+.|++|+..|+..... ...|++||+.+++....
T Consensus 246 ~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 246 KM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLTFC 297 (493)
T ss_pred CC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceEEE
Confidence 42 1222222211111 11124589999877765421 12588999987765444
No 204
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.84 E-value=2.4e-07 Score=98.16 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=143.2
Q ss_pred eecCCCCCccceeeEeceeEEEccC-CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc
Q 002164 148 RIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV 226 (958)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~ 226 (958)
.+++.+.....++.+..+..||+.. |.+....++|. ..++..+...+|||.|..|+.+.. ..+..++|.
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvsg---------~aqakl~DR 243 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVSG---------SAQAKLLDR 243 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEec---------CcceeEEcc
Confidence 3566666666666667899999843 11122234442 113337889999999999999763 556677777
Q ss_pred CCCceeeccCCCC--------ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhh
Q 002164 227 DTGKARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (958)
Q Consensus 227 ~~g~~~~lt~~~~--------~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~ 298 (958)
+|-+......+.. .+..+.+....|.|+.+-.|.+... +
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~--------------------D------------- 290 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY--------------------D------------- 290 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------------C-------------
Confidence 6655433322111 0112234567799999877766211 0
Q ss_pred ccCchhhhHHHHhhcceEEEEEcCC-eeeec---CC-C--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 299 LKDEYDEDLFDYYATTQLVLVSLDG-TVKEI---GP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~l---~~-~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
+.-+||.++-.. +.+.+ .. + -.++..+|+|||++||..-. ++.|.+|
T Consensus 291 -------------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~-------------DGSIQ~W 344 (641)
T KOG0772|consen 291 -------------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL-------------DGSIQIW 344 (641)
T ss_pred -------------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhccc-------------CCceeee
Confidence 223344443322 11111 11 1 34578899999999876653 4589999
Q ss_pred eccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE
Q 002164 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL 451 (958)
Q Consensus 372 d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l 451 (958)
+..+...+.......+ -.+ ...+..++||+||+.|+-. +..+.+-+||+ .+-+++-..
T Consensus 345 ~~~~~~v~p~~~vk~A-H~~------g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDL--rq~kkpL~~ 402 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDA-HLP------GQDITSISFSYDGNYLLSR-------------GFDDTLKVWDL--RQFKKPLNV 402 (641)
T ss_pred ecCCcccccceEeeec-cCC------CCceeEEEeccccchhhhc-------------cCCCceeeeec--cccccchhh
Confidence 9754333222111000 000 0256789999999998763 56677888886 222222111
Q ss_pred -Ee--eccccCceeeecCCceEEEEEecc--ccceEEEEEcCCC
Q 002164 452 -HK--LDLRYGGISWCDDSLALVYESWYK--TRRTRTWVISPGS 490 (958)
Q Consensus 452 -~~--~~~~~~~~~~spDg~~l~~~~~~~--~~~~~l~~~~~~~ 490 (958)
+. ....-....||||.+.|+...... .....|+.++..+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 21 122335689999998887654321 1224588877665
No 205
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.84 E-value=2.5e-06 Score=105.39 Aligned_cols=228 Identities=12% Similarity=0.133 Sum_probs=132.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce--e----eccCCCCccccccccceEEecC-CeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R----PLFQSPDIYLNAIFDNFVWVNN-STLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--~----~lt~~~~~~~~~~~~~~~wspD-G~~l~~~ 261 (958)
..+....|+|||++||... ....|.+|+..+... . .+..... ...+..++|+|. +..|+..
T Consensus 484 ~~V~~i~fs~dg~~latgg---------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG---------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CcEEEEEECCCCCEEEEEe---------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 4688899999999988854 255677777643110 0 0000000 011567889864 6666655
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~ 338 (958)
. ....|.++|+ +++. ..+... ..+..++
T Consensus 552 ~-------------------------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 N-------------------------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred e-------------------------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 1 1245677777 6643 344444 6788999
Q ss_pred cCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeee-cCCCCceE
Q 002164 339 PSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLY 415 (958)
Q Consensus 339 ~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG~~l~~ 415 (958)
|+| ||..|+..+. ++.+.+||+..+.. ..+... ..+..+.|+ ++|..++.
T Consensus 583 ~~p~~~~~L~Sgs~-------------Dg~v~iWd~~~~~~~~~~~~~--------------~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 583 YSSADPTLLASGSD-------------DGSVKLWSINQGVSIGTIKTK--------------ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EcCCCCCEEEEEcC-------------CCEEEEEECCCCcEEEEEecC--------------CCeEEEEEeCCCCCEEEE
Confidence 997 7887777763 34899999985432 222211 123467784 56777666
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC--C
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK--D 492 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~--~ 492 (958)
- +..+.|++||+ ..+.. ...+..+...+..+.|+ ++..|+..+.++. .+||.+..... .
T Consensus 636 g-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~--ikiWd~~~~~~~~~ 697 (793)
T PLN00181 636 G-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT--LKLWDLSMSISGIN 697 (793)
T ss_pred E-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE--EEEEeCCCCccccC
Confidence 2 44668999996 22222 23444455567778897 6777776654443 56666543211 0
Q ss_pred CCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
......+......+.. +.|+|+|++|+...
T Consensus 698 ~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs 727 (793)
T PLN00181 698 ETPLHSFMGHTNVKNF------VGLSVSDGYIATGS 727 (793)
T ss_pred CcceEEEcCCCCCeeE------EEEcCCCCEEEEEe
Confidence 1122222222222221 67999999888776
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.82 E-value=2.9e-07 Score=101.26 Aligned_cols=310 Identities=11% Similarity=0.012 Sum_probs=147.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.+.+.|..+ .....++. .+. ......+||||++++...+ ...|-++|+.+++..+-......
T Consensus 16 ~~v~viD~~t---~~~~~~i~---~~~~~h~~~~~s~Dgr~~yv~~r---------dg~vsviD~~~~~~v~~i~~G~~- 79 (369)
T PF02239_consen 16 GSVAVIDGAT---NKVVARIP---TGGAPHAGLKFSPDGRYLYVANR---------DGTVSVIDLATGKVVATIKVGGN- 79 (369)
T ss_dssp TEEEEEETTT----SEEEEEE----STTEEEEEE-TT-SSEEEEEET---------TSEEEEEETTSSSEEEEEE-SSE-
T ss_pred CEEEEEECCC---CeEEEEEc---CCCCceeEEEecCCCCEEEEEcC---------CCeEEEEECCcccEEEEEecCCC-
Confidence 3678877633 11233332 222 2344678999998777542 34799999998876543333332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+++|+||++++.+.. ...++.++|.
T Consensus 80 ----~~~i~~s~DG~~~~v~n~------------------------------------------------~~~~v~v~D~ 107 (369)
T PF02239_consen 80 ----PRGIAVSPDGKYVYVANY------------------------------------------------EPGTVSVIDA 107 (369)
T ss_dssp ----EEEEEE--TTTEEEEEEE------------------------------------------------ETTEEEEEET
T ss_pred ----cceEEEcCCCCEEEEEec------------------------------------------------CCCceeEecc
Confidence 458999999999987610 2245667776
Q ss_pred -CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 322 -DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 322 -~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
+.+. +.+... ..+..+.-||++..+++...+ .++++++|........++.....
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~~g---- 171 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIKVG---- 171 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE------
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeeccc----
Confidence 5432 233221 233455567887766666533 34888888664322111111111
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-e----c-------cccC
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-L----D-------LRYG 459 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~----~-------~~~~ 459 (958)
.......|+|||++++... ...+.+-++|. ..++...+.. . . ....
T Consensus 172 -------~~~~D~~~dpdgry~~va~------------~~sn~i~viD~---~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 172 -------RFPHDGGFDPDGRYFLVAA------------NGSNKIAVIDT---KTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp -------TTEEEEEE-TTSSEEEEEE------------GGGTEEEEEET---TTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred -------ccccccccCcccceeeecc------------cccceeEEEee---ccceEEEEeeccccccccccccccCCCc
Confidence 2335678999999876631 22446666764 3332222211 1 1 1112
Q ss_pred ceeeecCCc--eEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 460 GISWCDDSL--ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 460 ~~~~spDg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
++.|.-.+. ..+-....+. +.+++...- +.....+.....++ +.-+||+++++....-.
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~----v~v~d~~~w--kvv~~I~~~G~glF-------i~thP~s~~vwvd~~~~------ 290 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDP----VSVHDDYAW--KVVKTIPTQGGGLF-------IKTHPDSRYVWVDTFLN------ 290 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--T----TT-STTTBT--SEEEEEE-SSSS---------EE--TT-SEEEEE-TT-------
T ss_pred ceEEeeccccceecccccCCc----cccchhhcC--eEEEEEECCCCcce-------eecCCCCccEEeeccCC------
Confidence 234433322 1111111111 001122211 11111111111111 56799999988763110
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceE-EEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKE-RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
.+...|.++|.++-+.. .+....+. ... .+.|++||++++++...... .|.++|.
T Consensus 291 -----------~~~~~v~viD~~tl~~~~~i~~~~~~----~~~-------h~ef~~dG~~v~vS~~~~~~--~i~v~D~ 346 (369)
T PF02239_consen 291 -----------PDADTVQVIDKKTLKVVKTITPGPGK----RVV-------HMEFNPDGKEVWVSVWDGNG--AIVVYDA 346 (369)
T ss_dssp -----------SSHT-EEEEECCGTEEEE-HHHHHT------EE-------EEEE-TTSSEEEEEEE--TT--EEEEEET
T ss_pred -----------CCCceEEEEECcCcceeEEEeccCCC----cEe-------ccEECCCCCEEEEEEecCCC--EEEEEEC
Confidence 11347999999887543 33322221 011 25799999999998876554 7999998
Q ss_pred CCCCe
Q 002164 617 PDKKS 621 (958)
Q Consensus 617 ~~g~~ 621 (958)
.+.+.
T Consensus 347 ~Tl~~ 351 (369)
T PF02239_consen 347 KTLKE 351 (369)
T ss_dssp TTTEE
T ss_pred CCcEE
Confidence 77654
No 207
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.81 E-value=1.1e-08 Score=119.31 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=91.1
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-C-cEEEEcCCC-CCCCCC
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~vl~~~~~-~~~G~G 727 (958)
-+...+|.|....+. .++|+||++|||++..+.. ..+ ....|+++ + ++|+.++|| +..|+.
T Consensus 78 cl~l~i~~p~~~~~~--~~~pv~v~ihGG~~~~g~~--------~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPG--NSLPVMVWIHGGGFMFGSG--------SLY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCC--CCCCEEEEEcCCccccCCC--------CCC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 466788999764322 2489999999997654321 111 12245544 3 899998887 566665
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCC
Q 002164 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (958)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (958)
............+.|+..|++|+.++ --.|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222223345688999999999986 23799999999999999999988876 3457999999988654
No 208
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.80 E-value=1.7e-07 Score=92.14 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=127.2
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~ 731 (958)
.+..++.|.. .+.+|+|+++||.. -+..++....+.++++||+|++++.....+
T Consensus 33 kpLlI~tP~~-----~G~yPVilF~HG~~---------------l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~------ 86 (307)
T PF07224_consen 33 KPLLIVTPSE-----AGTYPVILFLHGFN---------------LYNSFYSQLLAHIASHGFIVVAPQLYTLFP------ 86 (307)
T ss_pred CCeEEecCCc-----CCCccEEEEeechh---------------hhhHHHHHHHHHHhhcCeEEEechhhcccC------
Confidence 4556777754 45699999999942 122334456677899999999977743322
Q ss_pred chhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhCC-C-ceeEEEEeccCCCCCCCCC
Q 002164 732 NDRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHAP-H-LFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 732 ~~~~~~~~~~D~~~av~~l~~~--~------~~d~~~i~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~~~~~~~~~~~ 801 (958)
.....++++..++++||.+. . ..+.++++++|||.||-.|.++|..+. + .|.++|.+.|+....-.
T Consensus 87 --p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~-- 162 (307)
T PF07224_consen 87 --PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKG-- 162 (307)
T ss_pred --CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCC--
Confidence 12357788999999999873 1 256789999999999999999998652 2 48888888887432110
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCC-----CCCCCChH--HHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.++ .|.. ..+.|.. =++..|++||...-- -..||-+. +-++||+..|. ++-..+..+-|
T Consensus 163 -----~~t---~P~i-Lty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYG 228 (307)
T PF07224_consen 163 -----KQT---PPPI-LTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYG 228 (307)
T ss_pred -----CCC---CCCe-eecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccc
Confidence 000 0000 0011100 124589999874333 12233344 35789998875 35555556667
Q ss_pred ccCCC------------------ccc-----HHHHHHHHHHHHHHhhccC
Q 002164 875 HGYAA------------------RES-----IMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 875 H~~~~------------------~~~-----~~~~~~~i~~fl~~~l~~~ 901 (958)
|.-.- .+. +.-+-..+++||+.+|.+.
T Consensus 229 HmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 229 HMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred cccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 75210 011 1222335799999998654
No 209
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.80 E-value=2.5e-07 Score=96.75 Aligned_cols=218 Identities=15% Similarity=0.061 Sum_probs=124.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE--cCCCCCCC----
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIG---- 725 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~--~~~~~~~G---- 725 (958)
.+..++.|...+... .|++|++.|.. -+.|-......+..|++.|++.+. .+|++.+-
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTG-------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTG-------------DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCC-------------ccchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 444567787753322 79999999842 122322233346678888998776 34432221
Q ss_pred CCCccc-chhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC-----
Q 002164 726 EGDEEA-NDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR----- 796 (958)
Q Consensus 726 ~G~~~~-~~~~---~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~----- 796 (958)
.+.... -.+. +...+.+....+.|+.++++. +++|.|.||||.||..+++..|..+..+-+.++.+..
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~ 217 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTE 217 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhh
Confidence 000000 0111 345688999999999999764 9999999999999999999998876666655542210
Q ss_pred -CC---CCCCcc-cc---------c----c-----------hhhhcHHHH----HhcCcccccCCCC-----CCEEEEee
Q 002164 797 -TL---TPFGFQ-NE---------D----R-----------TLWEATSTY----VEMSPFMSANKLK-----KPILLVHG 838 (958)
Q Consensus 797 -~~---~~~~~~-~~---------~----~-----------~~~~~~~~~----~~~sp~~~~~~~~-----~P~Lii~G 838 (958)
.+ ..|..- .+ . . .-+...+.. ..+.-..++.+.. ..+.++.+
T Consensus 218 Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A 297 (348)
T PF09752_consen 218 GVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAA 297 (348)
T ss_pred hhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEe
Confidence 00 011000 00 0 0 000001111 1112223344433 34788999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|.+|| ..+...|-+.... +|+.++++ ||.-.-......+.+.|.+=|+
T Consensus 298 ~~DaYVP--r~~v~~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 298 KNDAYVP--RHGVLSLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cCceEec--hhhcchHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 9999998 6666666555543 47777888 9975333344455556665544
No 210
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.1e-06 Score=92.07 Aligned_cols=305 Identities=13% Similarity=0.138 Sum_probs=162.1
Q ss_pred HHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 103 REIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 103 ~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
.+-|..|.+....|||..++|+.-+.. ....+++.+.. ..|.|||+.+ |... +..
T Consensus 244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~----------------p~~~~~~d~e~------~~l~IWDI~t-G~lk--rsF 298 (698)
T KOG2314|consen 244 IQRFYHPGVQFIDFSPNEKYLVTYSPE----------------PIIVEEDDNEG------QQLIIWDIAT-GLLK--RSF 298 (698)
T ss_pred HHhccCCCceeeecCCccceEEEecCC----------------ccccCcccCCC------ceEEEEEccc-cchh--cce
Confidence 344566788899999999999876643 01112222222 3799999966 3221 222
Q ss_pred ccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 183 QGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 183 t~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
....+.. .-....||-|+|++|-.. ...|-+++..+-.....-...-. ++..+.|||-+..|+|.
T Consensus 299 ~~~~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~lld~Kslki~----gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 299 PVIKSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFMLLDKKSLKIS----GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred eccCCCccccceEEeccCCceeEEec----------cceEEEEecCceeeecccccCCc----cccCcccCCCcceEEEE
Confidence 1111111 334468999999988754 34555665433111100000101 16789999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCCcccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAVYTSL 337 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~~~~~ 337 (958)
++..... | ..+-++.+ ++.. ++|.+ -..-..
T Consensus 365 tpe~~~~-------p-------------------------------------arvtL~evPs~~~iRt~nlfn-VsDckL 399 (698)
T KOG2314|consen 365 TPETNNI-------P-------------------------------------ARVTLMEVPSKREIRTKNLFN-VSDCKL 399 (698)
T ss_pred cccccCC-------c-------------------------------------ceEEEEecCccceeeecccee-eeccEE
Confidence 5443222 1 11333444 3321 12211 112345
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
-|-..|++|.|-..+.+-.. ....-.++.|+.+..+.. .+...+ ...-+-.++|-|.|.+.++..
T Consensus 400 hWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI-pve~ve-----------lke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI-PVEVVE-----------LKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred EeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC-Cceeee-----------cchheeeeeeccCCCeEEEEE
Confidence 68899999999876533110 011112455555543321 111111 112345789999999988862
Q ss_pred EeccCCCcccccccCCe--EEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002164 418 ETQDGGDAKVEVTPRDI--IYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
-. ..... .|-+.. ++++++.+.. ....+..+.|||.|+.++.+.-.. .+..|+-+|++-.+..
T Consensus 465 g~----------~~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 465 GN----------TVKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYADLK 530 (698)
T ss_pred cc----------ccccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchhhhh
Confidence 21 11223 444432 4444444422 224467799999999998876443 3356888877642111
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.....+.. ....+-|.|.|++++..+
T Consensus 531 ~~~~~eh~--------~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 531 DTASPEHF--------AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hccCcccc--------ccccceECCCCCEEEEee
Confidence 11111111 111267999999988765
No 211
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.79 E-value=2.5e-07 Score=90.44 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---CCCc---ccccchhhhcHHHHHhcCccccc-CCCC
Q 002164 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~~~ 830 (958)
++.++|+|.|+||+.|.+++.+.+ +++ |+++|....... ..+. .......+-....+.+...+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998883 555 777887552210 0000 00011111111112221111111 1224
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.++++++++.|++++ +..+...++ . +..++.+|.+|.+.+ ..+.+..|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~---~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYR---G----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhc---C----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 689999999999998 765555443 2 244466888999864 456678888886
No 212
>PTZ00420 coronin; Provisional
Probab=98.79 E-value=3.6e-06 Score=96.56 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|+++.++.+... ++.|.+||+.++... .+. .. ..+..+.|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~-~~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQIN-MP-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEe-cC-------------CcEEEEEECCCC
Confidence 567899999999987665422 348999999865432 221 11 235789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCc-----eeeecCCceEEEEEeccccceEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+.++.. .....|.+||+ ..+.....+..+.+.... ..|++|+++|+.+...+.....|.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 977652 33457899996 334333444333332211 2346899988877654432123555
Q ss_pred EcCCC
Q 002164 486 ISPGS 490 (958)
Q Consensus 486 ~~~~~ 490 (958)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55543
No 213
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.79 E-value=5.6e-09 Score=108.39 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=100.4
Q ss_pred cEEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
|.|++ .+.+|.|.+.. ..........|+.+.++.+++.-.+ +++.++||||||.+++.+++++|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 56667777763 1333344567777777777776334 46999999999999999999999999999999
Q ss_pred ccCC--CC----CCCCC-Cccc---------------------c------cch---------hhh---c-----------
Q 002164 791 SGAY--NR----TLTPF-GFQN---------------------E------DRT---------LWE---A----------- 813 (958)
Q Consensus 791 ~~~~--~~----~~~~~-~~~~---------------------~------~~~---------~~~---~----------- 813 (958)
+++. .. ..... .+.. . ... .+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8851 00 00000 0000 0 000 000 0
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 814 ---~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
...+...++...+.++++|+|+++|++|..+| +.....+.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00111122334566799999999999999998 8877775554443 7899999999986
No 214
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.79 E-value=2.3e-07 Score=97.81 Aligned_cols=219 Identities=10% Similarity=0.068 Sum_probs=149.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee---ccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---lt~~~~ 239 (958)
+-|.||+++..|...+..+|--++.+..+.....+|||+.|+. +.+...|-+||+..-.++. |+...-
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcch
Confidence 4789999976554344555555555668889999999999998 4557788899988755432 222111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. -..++.|||.+..|... ..++|.++
T Consensus 511 a-----CyALa~spDakvcFscc-------------------------------------------------sdGnI~vw 536 (705)
T KOG0639|consen 511 A-----CYALAISPDAKVCFSCC-------------------------------------------------SDGNIAVW 536 (705)
T ss_pred h-----hhhhhcCCccceeeeec-------------------------------------------------cCCcEEEE
Confidence 1 23677899998777541 23567788
Q ss_pred Ec-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccc
Q 002164 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 320 ~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~ 396 (958)
|+ +.. ++++... ++...+.+|+||..|....- ++.+.-||+..+. ++..+...
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlregr--qlqqhdF~--------- 592 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREGR--QLQQHDFS--------- 592 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhhh--hhhhhhhh---------
Confidence 88 654 4555444 77889999999999986553 4489999998432 22222211
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEec
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
..+.++.+.|.|.++++- =+...+++... .+.+..+|..++.-+-++.|++-|++.+.+..+
T Consensus 593 --SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 593 --SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred --hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCch
Confidence 234577889999999983 23456788774 556667788888888899999999998776433
Q ss_pred cccceEEEEEcC
Q 002164 477 KTRRTRTWVISP 488 (958)
Q Consensus 477 ~~~~~~l~~~~~ 488 (958)
+- ...|+..-
T Consensus 655 nl--LnawrtPy 664 (705)
T KOG0639|consen 655 NL--LNAWRTPY 664 (705)
T ss_pred hh--hhhccCcc
Confidence 32 44666543
No 215
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.78 E-value=4e-07 Score=81.94 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=99.3
Q ss_pred HHHHHHHHCCcEEEE--cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 703 TSVLLWLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~--~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
..+..|+.+|+.|.. .+|+-.+-+|....+ ......-.....++..|.+. .+..++++.|+||||-++.+++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp-~~~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPP-PGSGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCc-CccccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 446678999999987 333333334422111 11112222333445555555 3456899999999999999988754
Q ss_pred CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
.-.+.+++|.+-.+... +- |+. --..++..+++|+||+||+.|..-. .++. ... .
T Consensus 111 ~A~i~~L~clgYPfhpp----GK----------Pe~----~Rt~HL~gl~tPtli~qGtrD~fGt--r~~V---a~y--~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFHPP----GK----------PEQ----LRTEHLTGLKTPTLITQGTRDEFGT--RDEV---AGY--A 165 (213)
T ss_pred cCCcceEEEecCccCCC----CC----------ccc----chhhhccCCCCCeEEeecccccccC--HHHH---Hhh--h
Confidence 33478888876433211 11 111 1124667789999999999998754 3332 111 2
Q ss_pred CCCcEEEEEeCCCCccCCCcc---------cHHHHHHHHHHHHHH
Q 002164 861 HGALCRLVILPFESHGYAARE---------SIMHVLWETDRWLQK 896 (958)
Q Consensus 861 ~g~~~~~~~~p~~~H~~~~~~---------~~~~~~~~i~~fl~~ 896 (958)
...++|++++.++.|.+-... ......+++..|+.+
T Consensus 166 ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 166 LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 235799999999999873221 123344556666654
No 216
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=7.5e-08 Score=95.78 Aligned_cols=256 Identities=11% Similarity=0.110 Sum_probs=156.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhccccc-----------------ceeeceeecCCCCCccceeeEeceeEEEccCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPE-----------------EKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d 173 (958)
+-...|||||++++..+-++-..++.+..-. .-+--+.++.+......++-++.|.+|.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 4457899999999998876444444332111 1112244555555555555667899999966
Q ss_pred CCCCc-eeeec-cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE
Q 002164 174 GKLGQ-EIEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 174 g~~~~-~~~lt-~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (958)
|. .|+.. .++ ..+...+||-|+.+|+-.+. ...+.+.-+++|+..+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~sf---------D~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSASF---------DQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhcccc---------cceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 33 33332 122 36889999999999988542 445666677777765444433332 668889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----ee
Q 002164 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (958)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~ 326 (958)
++||..|+..+.+ ..+-+++. +++ .+
T Consensus 357 t~dG~~iisaSsD-------------------------------------------------gtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISASSD-------------------------------------------------GTVKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEecCC-------------------------------------------------ccEEEecCcchhhhhhcc
Confidence 9999999876221 12333333 332 12
Q ss_pred ecCCCccccccccCCCC-cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee
Q 002164 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
.+.....+.++-.-|.. .++++- ++ .+.++++++.|.-++..+...... +..-...
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVC-Nr------------sntv~imn~qGQvVrsfsSGkREg----------GdFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVC-NR------------SNTVYIMNMQGQVVRSFSSGKREG----------GDFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEE-cC------------CCeEEEEeccceEEeeeccCCccC----------CceEEEE
Confidence 22222334444444433 333333 22 348999999998888877654332 2224567
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (958)
.||.|.+++.. +++..+|-+.. ..|+-.+.+.-++.++-+++-.|-.+-|+.
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhhh
Confidence 89999999985 56667888775 567667777767777777777776655553
No 217
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.2e-06 Score=89.64 Aligned_cols=332 Identities=13% Similarity=0.106 Sum_probs=186.6
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
....+|++|+.+|+.... .++|.+... +. ..++..+ ...
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~--~~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVEL--KKT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEecc--cee
Confidence 456789999999998874 678877644 22 3444333 257
Q ss_pred cceeecCCCCeEEEEEeeccc-cCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
....+||-|.+|..-....-. ++..+..++-+++++++..+--...... + -..+.||+|..+.+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~--~W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--N--GWVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--c--Ccccccccchhhhhhh---------
Confidence 888999999988764433212 2223346777888777433211111110 0 1267888887665543
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecCCCccccccccCCCCc--E
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEK--Y 345 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDGk--~ 345 (958)
-.+.++.+++ .+....|.. ..++.+.+||-+. .
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 1234555665 233334432 4677888888755 3
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe-ccCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET-QDGG 423 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~-~~~~ 423 (958)
|++-.-. -...+..+.||... .+....+.... +|. ..--.+.|.+-|..|++.+.. .|..
T Consensus 182 vAvyvPe--------~kGaPa~vri~~~~~~~~~~~~a~ks-------FFk---adkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 182 VAVYVPE--------KKGAPASVRIYKYPEEGQHQPVANKS-------FFK---ADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred EEEEccC--------CCCCCcEEEEeccccccccchhhhcc-------ccc---cceeEEEeccCCceEEEEEEEeecCC
Confidence 4333211 12234566666554 12111211110 000 011357899999998887443 2332
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+..+ -+...||+++. +|.....-....+.+-.+.|+|+|+..+..-.... ..+-++++++ ..+++...
T Consensus 244 n~SY--YGEq~Lyll~t---~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP--Akvtifnlr~-----~~v~df~e 311 (566)
T KOG2315|consen 244 NASY--YGEQTLYLLAT---QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP--AKVTIFNLRG-----KPVFDFPE 311 (566)
T ss_pred Cccc--cccceEEEEEe---cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc--ceEEEEcCCC-----CEeEeCCC
Confidence 2222 23456899885 54332222344677888999999998877665554 4566677766 23443332
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeec
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~ 583 (958)
+.... +-|+|-|..|++..- |. -...+-+||.... +.+......
T Consensus 312 gpRN~------~~fnp~g~ii~lAGF--------------GN----L~G~mEvwDv~n~--K~i~~~~a~---------- 355 (566)
T KOG2315|consen 312 GPRNT------AFFNPHGNIILLAGF--------------GN----LPGDMEVWDVPNR--KLIAKFKAA---------- 355 (566)
T ss_pred CCccc------eEECCCCCEEEEeec--------------CC----CCCceEEEeccch--hhccccccC----------
Confidence 22111 558999998887751 11 1335889998763 333332211
Q ss_pred CCCccccccccCCEEEEEEecCC
Q 002164 584 SDQTEGDLYLNQLKILTSKESKT 606 (958)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~ 606 (958)
+..-+.|+|||.+++....++.
T Consensus 356 -~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred -CceEEEEcCCCcEEEEEecccc
Confidence 1112579999999888777654
No 218
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.74 E-value=1.3e-07 Score=97.45 Aligned_cols=269 Identities=9% Similarity=0.099 Sum_probs=161.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|.|+|++|+..+.. +..-+|+... ..-+..+.. +..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~---fnFEtilQa--HDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS---FNFETILQA--HDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce---eeHHHHhhh--hcc
Confidence 35678999999999987763 3455666421 112233322 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....||++|.+++- ++...-|-.|+..=...+-+....... +..+++||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7899999999999987 334555656655433332222222122 77899998666555441
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
..+.|-+.|. ..+.+.|..+ ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1233445554 4456667655 778999999987766
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+..+.+ +-|.+||..++.. |.+.... ..-+..+.|+|+|.+|+-.
T Consensus 238 asgskD-------------nlVKlWDprSg~c--l~tlh~H----------KntVl~~~f~~n~N~Llt~---------- 282 (464)
T KOG0284|consen 238 ASGSKD-------------NLVKLWDPRSGSC--LATLHGH----------KNTVLAVKFNPNGNWLLTG---------- 282 (464)
T ss_pred EEccCC-------------ceeEeecCCCcch--hhhhhhc----------cceEEEEEEcCCCCeeEEc----------
Confidence 655533 3688999885432 2221111 1234678999999877662
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 506 (958)
+.+..+-++|+ ..=++......+...+..+.|+|=-.-|+.+...++. ...|.+.+... ...+...+...+
T Consensus 283 ---skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p---~~~i~~AHd~~i 353 (464)
T KOG0284|consen 283 ---SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEP---LGEIPPAHDGEI 353 (464)
T ss_pred ---cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccccc---ccCCCcccccce
Confidence 34445677775 1112223334456678889999988877766554432 55666663332 122333344455
Q ss_pred cCCCCCCceEeccCCceEEEEe
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~ 528 (958)
++ ++|.|=|..|+.++
T Consensus 354 ws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 354 WS------LAYHPLGHILATGS 369 (464)
T ss_pred ee------eeccccceeEeecC
Confidence 55 78999997766654
No 219
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=3.7e-06 Score=89.63 Aligned_cols=300 Identities=12% Similarity=0.137 Sum_probs=160.6
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeecc
Q 002164 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (958)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~ 184 (958)
-+..+.+..+.|||.|++|..-+.. ++ ++|+ ....-.....++.+||..+ +. .+.+
T Consensus 68 ~~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe-~e~sp~~~~n~~~vwd~~s----g~--iv~s 123 (561)
T COG5354 68 RFRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPE-IEISPFTSKNNVFVWDIAS----GM--IVFS 123 (561)
T ss_pred eeecCCceecccCcccceeeeeccC---Cc--------------cChh-hccCCccccCceeEEeccC----ce--eEee
Confidence 3445678899999999999887664 00 0111 1111112223689999854 22 1211
Q ss_pred CCC--CC--cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc-ccccceEEecC--CeE
Q 002164 185 FPD--GA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNN--STL 257 (958)
Q Consensus 185 ~~~--~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~-~~~~~~~wspD--G~~ 257 (958)
+.. .. .-....||-|.+++|.+. ...|+++++ ++..-+. +...+. ..+..+.|||. +..
T Consensus 124 f~~~~q~~~~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 124 FNGISQPYLGWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDE 189 (561)
T ss_pred ccccCCcccccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCce
Confidence 111 11 112467899999999875 568899987 4433222 111011 12678999986 456
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeee--ecCCCcccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVK--EIGPPAVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~--~l~~~~~~~ 335 (958)
|+|.++...+. | ..-.||.+..+...+ .+.. ..--
T Consensus 190 la~~tPEk~~k-------p-----------------------------------a~~~i~sIp~~s~l~tk~lfk-~~~~ 226 (561)
T COG5354 190 LAYWTPEKLNK-------P-----------------------------------AMVRILSIPKNSVLVTKNLFK-VSGV 226 (561)
T ss_pred EEEEccccCCC-------C-----------------------------------cEEEEEEccCCCeeeeeeeEe-eccc
Confidence 77775554443 1 112233333222211 2221 2224
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.+.|.+.|++|.+...... ..+..+. ...+++|+++.+...+..... .+-+.++.|+|+++..++
T Consensus 227 qLkW~~~g~~ll~l~~t~~-ksnKsyf-gesnLyl~~~~e~~i~V~~~~-------------~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHT-KSNKSYF-GESNLYLLRITERSIPVEKDL-------------KDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred EEEEecCCceEEEEEEEee-eccccee-ccceEEEEeecccccceeccc-------------cccceeeeecccCCceeE
Confidence 6789999999988765432 1111011 135899999885554432211 134568999999999887
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
..-..+ ..+-..++ .|. .+ .......-..+.|||.+++|++..-.+.. ..+-++++.+. .
T Consensus 292 i~g~~p-----------a~~s~~~l---r~N-l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~-gni~i~~~~~r---f 351 (561)
T COG5354 292 ISGYMP-----------ASVSVFDL---RGN-LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQ-GNIEIFDPAGR---F 351 (561)
T ss_pred Eecccc-----------cceeeccc---ccc-eE-EecCCcccccccccCcccEEEEecCCccc-cceEEeccCCc---e
Confidence 532211 12333332 332 11 11223334457899999999997654432 44666676663 2
Q ss_pred EEE--eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 496 RIL--FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 496 ~~~--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..+ +...... ...|||||+++....
T Consensus 352 ~~~~~~~~~n~s--------~~~wspd~qF~~~~~ 378 (561)
T COG5354 352 KVAGAFNGLNTS--------YCDWSPDGQFYDTDT 378 (561)
T ss_pred EEEEEeecCCce--------EeeccCCceEEEecC
Confidence 332 2222111 145999998765443
No 220
>PTZ00420 coronin; Provisional
Probab=98.72 E-value=1.6e-06 Score=99.31 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=129.6
Q ss_pred CCCCceecCC-CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC-----Cceeeec
Q 002164 110 PLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-----GQEIEIQ 183 (958)
Q Consensus 110 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~-----~~~~~lt 183 (958)
.+..++|+|+ ++.||..+.+ +.|.||++...+.. .....+.
T Consensus 76 ~V~~lafsP~~~~lLASgS~D---------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSED---------------------------------LTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CeEEEEECCCCCccccccccceEEee
Confidence 5778899997 7787777665 47899998643210 0112333
Q ss_pred cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 184 GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
++ ...+....|+|++..++.+.. ....|.+||+.+++.......+.. +..++|+|||+.|+.+.
T Consensus 123 gH--~~~V~sVaf~P~g~~iLaSgS--------~DgtIrIWDl~tg~~~~~i~~~~~-----V~SlswspdG~lLat~s- 186 (568)
T PTZ00420 123 GH--KKKISIIDWNPMNYYIMCSSG--------FDSFVNIWDIENEKRAFQINMPKK-----LSSLKWNIKGNLLSGTC- 186 (568)
T ss_pred cC--CCcEEEEEECCCCCeEEEEEe--------CCCeEEEEECCCCcEEEEEecCCc-----EEEEEECCCCCEEEEEe-
Confidence 32 346889999999998765432 245788899988765432222221 67899999999988651
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccc-----c
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVY-----T 335 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~-----~ 335 (958)
....|.++|+ +++. ..+..+ +.. .
T Consensus 187 ------------------------------------------------~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 187 ------------------------------------------------VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred ------------------------------------------------cCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 1234777777 6643 233222 221 1
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
...|++|+++|+.+...+. ..+++.+||+.. +.......+... .+.-.+.|.+|...++
T Consensus 219 ~~~fs~d~~~IlTtG~d~~---------~~R~VkLWDlr~~~~pl~~~~ld~~-----------~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKN---------NMREMKLWDLKNTTSALVTMSIDNA-----------SAPLIPHYDESTGLIY 278 (568)
T ss_pred eeeEcCCCCEEEEEEcCCC---------CccEEEEEECCCCCCceEEEEecCC-----------ccceEEeeeCCCCCEE
Confidence 1235799999888764321 123799999983 322221111111 1112245656543333
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--ccccCceeeecC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDD 466 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spD 466 (958)
+. ..+...|++|++ ..+....|... .....+++|.|+
T Consensus 279 ls------------GkGD~tIr~~e~---~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LI------------GKGDGNCRYYQH---SLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EE------------EECCCeEEEEEc---cCCcEEeecccccCCCccceEEccc
Confidence 32 134567888885 33445555322 223456777775
No 221
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.1e-06 Score=99.83 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=154.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeec--------eeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAG--------LRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
...+.|.|||+.|.....+.....+.-.-.+.+... ..+.-.+......+.++.+.++.+.. + .....|
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~--~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-G--EEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-C--Ccccee
Confidence 456889999998888766532222211111111111 11112222223333345677777743 2 112234
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
+.++ -.+...+++-+|++||+.+ ....|-+++.+++...+.+...... +..+.+.|.|.+|++++
T Consensus 93 ~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 93 ARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVSS 157 (933)
T ss_pred eeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEEe
Confidence 3333 3478889999999999954 4778889998876665555444433 77889999999999872
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecC---CC------
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP------ 331 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~---~~------ 331 (958)
..++++++++ +|... .++ ..
T Consensus 158 -------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 158 -------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILS 188 (933)
T ss_pred -------------------------------------------------cCceEEEEEcccchhhhhcccCCcccccccc
Confidence 3355777777 66321 121 11
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|||..+++...+ +.|-+|+.++.+..- |...... .....+.|||.|
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d-------------~~Vkvy~r~~we~~f~Lr~~~~s-----------s~~~~~~wsPnG 244 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVD-------------NTVKVYSRKGWELQFKLRDKLSS-----------SKFSDLQWSPNG 244 (933)
T ss_pred ceeeeeeecCCCCeEEeeccC-------------CeEEEEccCCceeheeecccccc-----------cceEEEEEcCCC
Confidence 234678999997777776643 378888888765432 2221111 235678999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
++|+.. .-.++|-+|+. +. ..+ ......+...+|-|+...|-+..+..
T Consensus 245 ~YiAAs-------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 245 KYIAAS-------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred cEEeee-------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCeeEEEeecc
Confidence 999874 45678888986 32 111 22233455678888887777765433
No 222
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-06 Score=94.02 Aligned_cols=269 Identities=11% Similarity=0.095 Sum_probs=163.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
+.+...||. ...||... ...||+|+..+|+...|....... +.++.|+++|+.|++..
T Consensus 179 Y~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~------- 236 (484)
T KOG0305|consen 179 YLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT------- 236 (484)
T ss_pred hhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee-------
Confidence 566678994 34566543 568999999999999998775332 78999999999999872
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCC-C-ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~-~-~~~~~~~~SpDGk~ 345 (958)
..+.+.++|. ....+.+.. . ..+...+|. +..
T Consensus 237 ------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~ 272 (484)
T KOG0305|consen 237 ------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSV 272 (484)
T ss_pred ------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cce
Confidence 2234666665 334555555 3 778888998 332
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+...+ + .+.|..+|+.......-+ ..++...+..+.|++||+.++--
T Consensus 273 lssGs-r------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~lASG--------- 319 (484)
T KOG0305|consen 273 LSSGS-R------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQLASG--------- 319 (484)
T ss_pred EEEec-C------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCeeccC---------
Confidence 32222 2 336777777632211000 01222456789999999988762
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+.++.+++||. ........++.+...+..++|+|=.+-|+.+...... ..|..++..++ ......+....
T Consensus 320 ----gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g--~~i~~vdtgsQ- 389 (484)
T KOG0305|consen 320 ----GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTG--ARIDSVDTGSQ- 389 (484)
T ss_pred ----CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCC--cEecccccCCc-
Confidence 55667899985 3444556778888999999999987776665432222 34555555553 22222221111
Q ss_pred ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCC
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSD 585 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~ 585 (958)
+-+ +.||+..+.|+...-. ....|-+|+..+-+......+... .+.
T Consensus 390 Vcs------L~Wsk~~kEi~sthG~-------------------s~n~i~lw~~ps~~~~~~l~gH~~----RVl----- 435 (484)
T KOG0305|consen 390 VCS------LIWSKKYKELLSTHGY-------------------SENQITLWKYPSMKLVAELLGHTS----RVL----- 435 (484)
T ss_pred eee------EEEcCCCCEEEEecCC-------------------CCCcEEEEeccccceeeeecCCcc----eeE-----
Confidence 122 7899999888877511 112466666655444333322211 122
Q ss_pred CccccccccCCEEEEEEe
Q 002164 586 QTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 586 ~~~~~~s~dg~~l~~~~~ 603 (958)
..++||||..++....
T Consensus 436 --~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 436 --YLALSPDGETIVTGAA 451 (484)
T ss_pred --EEEECCCCCEEEEecc
Confidence 2468999877765444
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.2e-06 Score=94.48 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=145.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
..+.++||+|....|.... +.++++++.... +....|. ..
T Consensus 127 ~~W~~qfs~dEsl~arlv~----------------------------------nev~f~~~~~f~--~~~~kl~----~~ 166 (566)
T KOG2315|consen 127 NGWVPQFSIDESLAARLVS----------------------------------NEVQFYDLGSFK--TIQHKLS----VS 166 (566)
T ss_pred cCcccccccchhhhhhhhc----------------------------------ceEEEEecCCcc--ceeeeee----cc
Confidence 4468999999888777766 378898885422 3444553 23
Q ss_pred cccceeecCCCC--eEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....+||-+. +||+-. ....+......||.+..+ +.-..+....- +.+.--.+.|.+-|.-|.+..
T Consensus 167 ~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~-~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLa----- 236 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEE-GQHQPVANKSF--FKADKVQMKWNKLGTALLVLA----- 236 (566)
T ss_pred ceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccc-cccchhhhccc--cccceeEEEeccCCceEEEEE-----
Confidence 577888888644 444432 101122234456655522 22222211110 011112678998887666551
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCee--eecCCCccccccccCCCCcE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV--KEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~l~~~~~~~~~~~SpDGk~ 345 (958)
+..-|...-+||+...||.++.+|+. ..|...+.+.++.|||+|+-
T Consensus 237 --------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 237 --------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred --------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11112223346688899999997643 44554488999999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+++.-.- .+..+.++|++++-+-.+-..+. ..+-|+|.|+.|++. .-|
T Consensus 285 F~VvyGf-----------MPAkvtifnlr~~~v~df~egpR---------------N~~~fnp~g~ii~lA---GFG--- 332 (566)
T KOG2315|consen 285 FAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGPR---------------NTAFFNPHGNIILLA---GFG--- 332 (566)
T ss_pred EEEEEec-----------ccceEEEEcCCCCEeEeCCCCCc---------------cceEECCCCCEEEEe---ecC---
Confidence 8887633 35689999999876554443322 357799999988873 111
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEEE
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYES 474 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~ 474 (958)
...+.+-+||+ .+ .+.|...+. +...+.|+|||++++.++
T Consensus 333 ----NL~G~mEvwDv--~n---~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 333 ----NLPGDMEVWDV--PN---RKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ----CCCCceEEEec--cc---hhhccccccCCceEEEEcCCCcEEEEEe
Confidence 23556778886 22 334433332 344579999999998765
No 224
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=7.6e-06 Score=80.45 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=105.1
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++++|||.|++|+..+ |+..+-||.-..++.+-+..+++.+ ..+..++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aS-------------FD~t~~Iw~k~~~efecv~~lEGHE----------nEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASAS-------------FDATVVIWKKEDGEFECVATLEGHE----------NEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEee-------------ccceEEEeecCCCceeEEeeeeccc----------cceeEEEEcCCCC
Confidence 5678999999999999887 4557888877777777776665544 4567899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.|+.- +....+|+|.+ .++.+. ..|..+..++-.+.|.|--. |+|+..+++. .++|+-..
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnT-Ik~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNT-IKVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCe-EEEEeecC
Confidence 98873 33446899986 233333 34466778888999999654 4555555543 67787665
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.+=...+..+.....+++ +.|.+.|.+|+...
T Consensus 182 -dddW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 -DDDWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred -CCCeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 3223445555665555665 77899998888776
No 225
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.64 E-value=1.2e-06 Score=98.21 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=103.6
Q ss_pred cHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HH
Q 002164 702 STSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LL 777 (958)
Q Consensus 702 ~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~a 777 (958)
..+.++|+++||.|+.++- +.-+.+...-. +.+.++.+.+|++.+.+. ...++|-++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW---~nP~~~~r~~~-ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISW---RNPDKAHREWG-LSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeC---CCCChhhcCCC-HHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHH
Confidence 3567889999999999443 22222222222 233345788999988886 34468999999999999986 67
Q ss_pred HhCCC-ceeEEEEeccCCCCCCCC-C-------------------Cccc------------ccc----------------
Q 002164 778 AHAPH-LFCCGIARSGAYNRTLTP-F-------------------GFQN------------EDR---------------- 808 (958)
Q Consensus 778 ~~~p~-~~~a~v~~~~~~~~~~~~-~-------------------~~~~------------~~~---------------- 808 (958)
++.++ +++.++..+.+.|..... . ++.. ...
T Consensus 311 A~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p 390 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEP 390 (560)
T ss_pred hcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCc
Confidence 77775 799998877765533100 0 0000 000
Q ss_pred -----hhhhcH-------------HHHHhcCccc-----------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 809 -----TLWEAT-------------STYVEMSPFM-----------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 809 -----~~~~~~-------------~~~~~~sp~~-----------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
..|.+. +.|.+..... .+.+|++|+|++.|+.|.+|| ...+.++.+.+
T Consensus 391 ~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvP--w~s~~~~~~l~- 467 (560)
T TIGR01839 391 PAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITP--WDAVYRSALLL- 467 (560)
T ss_pred chhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCC--HHHHHHHHHHc-
Confidence 011110 1121211111 356789999999999999999 88777776655
Q ss_pred hCCCcEEEEEeCCCCcc
Q 002164 860 GHGALCRLVILPFESHG 876 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~ 876 (958)
|.+++++..++ ||.
T Consensus 468 --gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 468 --GGKRRFVLSNS-GHI 481 (560)
T ss_pred --CCCeEEEecCC-Ccc
Confidence 33689999886 884
No 226
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=3.1e-06 Score=83.14 Aligned_cols=197 Identities=15% Similarity=0.173 Sum_probs=119.5
Q ss_pred CcccceeecCC-CCeEEEEEeeccccCCCCCceEEEEEcCCCc---eeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 189 AKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
+.+-..+|+|- |..||... +...|.+++..++. .+.++.. ..+..+.+++|+|.|++|+..+-+
T Consensus 15 ~r~W~~awhp~~g~ilAscg---------~Dk~vriw~~~~~~s~~ck~vld~---~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCG---------TDKAVRIWSTSSGDSWTCKTVLDD---GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CcEEEEEeccCCceEEEeec---------CCceEEEEecCCCCcEEEEEeccc---cchheeeeeeecCCCcEEEEeecc
Confidence 36788999997 66555533 35677888876432 2222221 122338899999999999977221
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe--e-eecCCC-ccccccccC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT--V-KEIGPP-AVYTSLDPS 340 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~--~-~~l~~~-~~~~~~~~S 340 (958)
...-||.-. +++ . ..|..+ ..+-.++||
T Consensus 83 -----------------------------------------------~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 -----------------------------------------------ATVVIWKKE-DGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred -----------------------------------------------ceEEEeecC-CCceeEEeeeeccccceeEEEEc
Confidence 112222221 332 2 222222 567789999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++|++||.-+.+ ..+|+|.++. .+..-+..+. .+...+..+.|.|--..|+-
T Consensus 115 ~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~dlL~S---- 167 (312)
T KOG0645|consen 115 ASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTEDLLFS---- 167 (312)
T ss_pred CCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcceeEE----
Confidence 999999988854 3899999884 3333322221 11234567889985443332
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCC---ceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
.+..+.|.+|+-+ ++.. ..+|......+..+.|.+.|.+|+..+++.+ ..||+
T Consensus 168 ---------~SYDnTIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t--v~Iw~ 223 (312)
T KOG0645|consen 168 ---------CSYDNTIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT--VSIWR 223 (312)
T ss_pred ---------eccCCeEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc--eEeee
Confidence 1445566666632 1222 3445555556788999999999998877665 67887
No 227
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.64 E-value=7.4e-08 Score=100.90 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=123.1
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+++... .+.++...++.|..... -..+++|+|++.||... . ...| ...++.|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs-------~----~~~f----~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS-------Y----VTGF----AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC-------C----ccch----hhhHHHHhhCceEEE
Confidence 345555443 36678888999876432 01146999999999421 1 1122 245778999999999
Q ss_pred EcCCCCCCCCCCccc---c-----hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002164 717 GGPTTPIIGEGDEEA---N-----DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---~-----~~~~~~~~~D~~~av~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (958)
.++..++. .|+... . ...+-....|+...+++|.+. + .+|+.+|+++|||+||+.++.++.-..
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 85554322 222211 1 112235577888999999887 4 478999999999999999999887543
Q ss_pred Cc---e-eEE----EEecc-CCCCCCCCCCcccccchhhhcHHHHHhc----------Cc-------ccccCCCCCCEEE
Q 002164 782 HL---F-CCG----IARSG-AYNRTLTPFGFQNEDRTLWEATSTYVEM----------SP-------FMSANKLKKPILL 835 (958)
Q Consensus 782 ~~---~-~a~----v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------sp-------~~~~~~~~~P~Li 835 (958)
+. . .|. ++..+ ..+.. ...+....|.....+... +| ...+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~-----~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGR-----LLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChh-----hhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 0 111 11110 00000 000011111111122111 11 1234577899999
Q ss_pred EeeCCCCCCCCChH-HHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 836 VHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 836 i~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
+.|..|...| +. +....+..|. |....+...|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999776 33 3334444443 3335677889999963
No 228
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.64 E-value=8e-07 Score=89.19 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=116.7
Q ss_pred CCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC-------------Cc----
Q 002164 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-------------DE---- 729 (958)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G-------------~~---- 729 (958)
.+++|+||+.||-. ++...+..++..+|++||+|.++..||....- ..
T Consensus 115 ~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45699999999932 12233345677899999999998877754310 00
Q ss_pred ----cc-------chhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 002164 730 ----EA-------NDRFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANLL 777 (958)
Q Consensus 730 ----~~-------~~~~~~~~~~D~~~av~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~a 777 (958)
.. ..........++..|+.-|.+. +-+|.++++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 00 0111234466666776665542 136678899999999999999888
Q ss_pred HhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 778 ~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
+.+ ..|+|+|+..+- +.+. .+ ....+++-|+|+|.-+ |... .+.....++
T Consensus 260 s~~-t~FrcaI~lD~W----M~Pl-----~~---------------~~~~~arqP~~finv~-~fQ~----~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAW----MFPL-----DQ---------------LQYSQARQPTLFINVE-DFQW----NENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeee----eccc-----ch---------------hhhhhccCCeEEEEcc-cccc----hhHHHHHHh
Confidence 877 569999987641 1110 00 1223457899998844 4442 334444455
Q ss_pred HHhCCCcEEEEEeCCCCccCC-C---------------------cccHHHHHHHHHHHHHHhhccC
Q 002164 858 LKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
.......-.++.+.|.-|.-. . .+..+...+..++||++|+...
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~ 375 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLV 375 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhh
Confidence 544444456777888777421 0 1122345566789999988644
No 229
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.63 E-value=3.2e-07 Score=87.94 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEE
Q 002164 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (958)
Q Consensus 755 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~L 834 (958)
-++++||++.|.|+||.++++++..+|....+++..+++....... +...-+.. + ..|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~----------------~~~~~~~~---~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG----------------LPGWLPGV---N-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh----------------ccCCcccc---C-cchhh
Confidence 4788999999999999999999999877677777776654321110 00000000 0 58999
Q ss_pred EEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..||+.|++|| ..-+....+.|+..+.++++..|+|.+|.... +-+..+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998752 235667788776
No 230
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.62 E-value=1.1e-05 Score=79.20 Aligned_cols=191 Identities=13% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCch---------hcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
++..+.+.-+|..|.....++.+.++ .+.++..-+..+.++.+.....+++.+..+.+|++++ |+.
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk~- 86 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GKQ- 86 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----CcE-
Confidence 45667778888766655555443333 4445555667777887777777777778899999976 442
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-------CCceeeccCCCCccccccccceEEec
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
+.....+..+....||++|..++++.+.. -.....|.++++. +.++......++.. +....|+|
T Consensus 87 -la~~k~~~~Vk~~~F~~~gn~~l~~tD~~----mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk----it~a~Wg~ 157 (327)
T KOG0643|consen 87 -LATWKTNSPVKRVDFSFGGNLILASTDKQ----MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK----ITSALWGP 157 (327)
T ss_pred -EEEeecCCeeEEEeeccCCcEEEEEehhh----cCcceEEEEEEccCChhhhcccCceEEecCCccc----eeeeeecc
Confidence 32233445788889999999999987422 2234456666655 23322222222222 56788999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP- 330 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~- 330 (958)
-|+.|++.- ..+.|-.+|+ +|. ...-..
T Consensus 158 l~~~ii~Gh-------------------------------------------------e~G~is~~da~~g~~~v~s~~~ 188 (327)
T KOG0643|consen 158 LGETIIAGH-------------------------------------------------EDGSISIYDARTGKELVDSDEE 188 (327)
T ss_pred cCCEEEEec-------------------------------------------------CCCcEEEEEcccCceeeechhh
Confidence 999998760 2244778888 773 222222
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~ 376 (958)
. ..++++.+|||..+++..+.+. +-.+||..+=
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl 222 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTL 222 (327)
T ss_pred hccccccccccCCcceEEecccCc-------------cceeeeccce
Confidence 2 6788999999999888777442 5667777653
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=9.4e-07 Score=89.93 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|.+||..++-.+ -+...|.+|++++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS--------~gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d---- 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTAS--------FGSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD---- 259 (445)
T ss_pred ceeeEEEEcCCCCEEeecc--------cCcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc----
Confidence 4788899999999888754 24678999999999988887444333 7789999999999987321
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCCccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDGk~l 346 (958)
..-.||.-+- +.+. .+...+.+....|||+|++|
T Consensus 260 -------------------------------------------avfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 260 -------------------------------------------AVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred -------------------------------------------ceeeeehhcccceecc-eeccCCceeeeeecCCCCEE
Confidence 1112332221 3333 33333578889999999999
Q ss_pred EEEeecCC
Q 002164 347 LISSIHRP 354 (958)
Q Consensus 347 ~~~~~~~~ 354 (958)
+|+....+
T Consensus 296 Lf~~sgsp 303 (445)
T KOG2139|consen 296 LFACSGSP 303 (445)
T ss_pred EEEEcCCc
Confidence 99986654
No 232
>PRK10115 protease 2; Provisional
Probab=98.61 E-value=1.2e-05 Score=96.05 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=136.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc--eeeeccCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ--EIEIQGFPDG 188 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~--~~~lt~~~~~ 188 (958)
+....+||||++|||+.+. .++.. ..|++.++.+ +. ...+.+
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~------~~l~v~d~~t----g~~l~~~i~~---- 172 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQ------YGIRFRNLET----GNWYPELLDN---- 172 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEE------EEEEEEECCC----CCCCCccccC----
Confidence 4567899999999999763 33222 4899999854 33 223321
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC--ceeeccCCCCccccccccceEEec-CCeEEEEEecCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (958)
.. ....|++||+.|+|+.... ......+||++++.++ +.+.+....... .....|.+ |++++++.+...
T Consensus 173 ~~-~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 173 VE-PSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred cc-eEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEEEECC
Confidence 12 4589999999999987521 1123579999999988 555565533321 22233544 888887542110
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE--c-CCeeeecCCC--ccccccccC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS--L-DGTVKEIGPP--AVYTSLDPS 340 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~--~-~g~~~~l~~~--~~~~~~~~S 340 (958)
..+.+++++ + +++.+.+... .....+ .
T Consensus 245 ----------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (686)
T PRK10115 245 ----------------------------------------------TTSEVLLLDAELADAEPFVFLPRRKDHEYSL--D 276 (686)
T ss_pred ----------------------------------------------ccccEEEEECcCCCCCceEEEECCCCCEEEE--E
Confidence 123456665 3 4543333322 211122 2
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
..+..+++.++... ....|...+++ .+..+.|..... ...+..+.++ ++.|++....
T Consensus 277 ~~~~~ly~~tn~~~---------~~~~l~~~~~~~~~~~~~l~~~~~-----------~~~i~~~~~~--~~~l~~~~~~ 334 (686)
T PRK10115 277 HYQHRFYLRSNRHG---------KNFGLYRTRVRDEQQWEELIPPRE-----------NIMLEGFTLF--TDWLVVEERQ 334 (686)
T ss_pred eCCCEEEEEEcCCC---------CCceEEEecCCCcccCeEEECCCC-----------CCEEEEEEEE--CCEEEEEEEe
Confidence 33466776665421 11245555555 223333332110 0123455565 5566664322
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeee--cCCceEEEEEeccccceEEEEEcCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWC--DDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.....+++++. +++..+.|. ........+.++ +++..+++....-..-..+|.++++++
T Consensus 335 ----------~g~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 335 ----------RGLTSLRQINR---KTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred ----------CCEEEEEEEcC---CCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 33556788874 555555554 222222223344 566666665543333378999998874
No 233
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.59 E-value=3.8e-06 Score=93.38 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=155.0
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+.+|+..+ ....|.++ . +.+....|-|.+++|+... .++.|-++|+.+......+...++.
T Consensus 395 SikiWn~~t---~kciRTi~---~-~y~l~~~Fvpgd~~Iv~G~---------k~Gel~vfdlaS~~l~Eti~AHdga-- 456 (888)
T KOG0306|consen 395 SIKIWNRDT---LKCIRTIT---C-GYILASKFVPGDRYIVLGT---------KNGELQVFDLASASLVETIRAHDGA-- 456 (888)
T ss_pred cEEEEEccC---cceeEEec---c-ccEEEEEecCCCceEEEec---------cCCceEEEEeehhhhhhhhhccccc--
Confidence 788999843 13344443 2 3677788999888888844 2556777777776654444433332
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
+.+++-+||++.++..+.++.. .+|...+
T Consensus 457 --IWsi~~~pD~~g~vT~saDktV-----------------------------------------------kfWdf~l~~ 487 (888)
T KOG0306|consen 457 --IWSISLSPDNKGFVTGSADKTV-----------------------------------------------KFWDFKLVV 487 (888)
T ss_pred --eeeeeecCCCCceEEecCCcEE-----------------------------------------------EEEeEEEEe
Confidence 6788888999999877332211 1222211
Q ss_pred --CCee---------eecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCcccc
Q 002164 322 --DGTV---------KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (958)
Q Consensus 322 --~g~~---------~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~ 389 (958)
.|.. +.|--...+..+.+||||++|++.--+ +++.+|-+++=.. -.|..+.
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd-------------nTVkVyflDtlKFflsLYGHk---- 550 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD-------------NTVKVYFLDTLKFFLSLYGHK---- 550 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc-------------CeEEEEEecceeeeeeecccc----
Confidence 1211 122112567788999999999998744 3677777765322 2233221
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
..+..+..|||++.|+-- +.+..+-+|.+ .=|...+.+..++..+..+.|.|+ ..
T Consensus 551 ---------LPV~smDIS~DSklivTg-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~ 605 (888)
T KOG0306|consen 551 ---------LPVLSMDISPDSKLIVTG-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-TH 605 (888)
T ss_pred ---------cceeEEeccCCcCeEEec-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ce
Confidence 334678899999987762 23334555553 136677778888888899999995 46
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+.|++..++ .+-++|-+. -+..+..+.+...++. ++.+|+|.+++..+.
T Consensus 606 ~FFt~gKD~---kvKqWDg~k--Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 606 LFFTCGKDG---KVKQWDGEK--FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred eEEEecCcc---eEEeechhh--hhhheeeccchheeee------eEEcCCCCeEEeccC
Confidence 777776664 466666544 2344556666666665 778999998887763
No 234
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.56 E-value=1.8e-06 Score=94.06 Aligned_cols=244 Identities=17% Similarity=0.130 Sum_probs=158.4
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.|+..+++.||..+... -.|..- ++.|+|++.||--..+.. .+..+|+. ..+-.|+.+||
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~lh-RIp~~~-----~~rp~Vll~HGLl~sS~~---Wv~n~p~~------sLaf~LadaGY 107 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTLH-RIPRGK-----KKRPVVLLQHGLLASSSS---WVLNGPEQ------SLAFLLADAGY 107 (403)
T ss_pred HcCCceEEEEEEccCCeEEEEe-eecCCC-----CCCCcEEEeecccccccc---ceecCccc------cHHHHHHHcCC
Confidence 3456789999999999955433 345441 458999999996544332 22222222 23446889999
Q ss_pred EEEEcCCCCCCCCCCcc-----------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 714 AILGGPTTPIIGEGDEE-----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~-----------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
-|-..+.|| .-|++.. ..-.+.+-..-|+-+.||++.+. ...+++..+|||.|+.....++...|+
T Consensus 108 DVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 108 DVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred ceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccch
Confidence 999977765 2343331 12223344678999999999886 345799999999999999998888765
Q ss_pred ---ceeEEEEeccCCCCCCC---------C-----------CCc------------------ccc-c-------------
Q 002164 783 ---LFCCGIARSGAYNRTLT---------P-----------FGF------------------QNE-D------------- 807 (958)
Q Consensus 783 ---~~~a~v~~~~~~~~~~~---------~-----------~~~------------------~~~-~------------- 807 (958)
+++..++.+|+...... . ++. ... .
T Consensus 185 ~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~ 264 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLV 264 (403)
T ss_pred hhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHc
Confidence 68888888875421100 0 000 000 0
Q ss_pred ---chh------------------------h-----------------hcHHHHHh-cCcccccCCCCCCEEEEeeCCCC
Q 002164 808 ---RTL------------------------W-----------------EATSTYVE-MSPFMSANKLKKPILLVHGEEDN 842 (958)
Q Consensus 808 ---~~~------------------------~-----------------~~~~~~~~-~sp~~~~~~~~~P~Lii~G~~D~ 842 (958)
... | .+...|.. ..|...+.++++|+.+.+|++|.
T Consensus 265 G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~ 344 (403)
T KOG2624|consen 265 GWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDW 344 (403)
T ss_pred CcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcc
Confidence 000 0 01112222 24566788889999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHHhh
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~--~~~~~~~~~~~~i~~fl~~~l 898 (958)
.+. ++...++...+..... ...+.+++=.|.- ......+.++..|++.+.++.
T Consensus 345 l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 345 LAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 998 8888888877776544 3333467778862 234556788889999888765
No 235
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=4.4e-06 Score=95.15 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=97.5
Q ss_pred EEEEEc-CCeee-ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCc
Q 002164 316 LVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIP 391 (958)
Q Consensus 316 l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p 391 (958)
+-++.. .|+.. .|+.. -.+...+++-+|+++++.+.+. .|-+.+++. ...+.+..+
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrgh------- 137 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRGH------- 137 (933)
T ss_pred EEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeeccc-------
Confidence 445555 55433 33332 4567889999999999998542 566777663 333333222
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--------ccccCceee
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------DLRYGGISW 463 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--------~~~~~~~~~ 463 (958)
...+..+.|+|.|+.|+.. ...+.|++|++ .++.....++.. ..-+..++|
T Consensus 138 ------~apVl~l~~~p~~~fLAvs-------------s~dG~v~iw~~--~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 138 ------DAPVLQLSYDPKGNFLAVS-------------SCDGKVQIWDL--QDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred ------CCceeeeeEcCCCCEEEEE-------------ecCceEEEEEc--ccchhhhhcccCCccccccccceeeeeee
Confidence 2345678999999998885 55678999996 233333333221 122456899
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+|+|..+++..-++ .+-+++..+.........+..... +.. ++|||.|++|+....
T Consensus 197 ~Pk~g~la~~~~d~----~Vkvy~r~~we~~f~Lr~~~~ss~-~~~-----~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDN----TVKVYSRKGWELQFKLRDKLSSSK-FSD-----LQWSPNGKYIAASTL 252 (933)
T ss_pred cCCCCeEEeeccCC----eEEEEccCCceeheeecccccccc-eEE-----EEEcCCCcEEeeecc
Confidence 99977777664433 255555555422222222222221 221 789999999998763
No 236
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.55 E-value=7.3e-07 Score=94.19 Aligned_cols=231 Identities=13% Similarity=0.129 Sum_probs=144.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..+.||++|..++..+.+ ..|.+||+++ |+. +..+..+
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~~ 299 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHLD 299 (503)
T ss_pred hhhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEecC
Confidence 356788899999988887765 5789999976 432 2223344
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.......+.||+..++++. .....|..||..+|+..+-....-.. +..+.|-++|+.++.++.+
T Consensus 300 ~~~~cvkf~pd~~n~fl~G--------~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSDd---- 363 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVG--------GSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSDD---- 363 (503)
T ss_pred CCceeeecCCCCCcEEEEe--------cCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeeccC----
Confidence 4678889999998888864 24668899999998866544333322 6688899999999877221
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC--ccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~--~~~~~~~~SpDGk~l 346 (958)
..-.||.+...=..+.+... -....+..+|.|+++
T Consensus 364 -------------------------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 364 -------------------------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWF 400 (503)
T ss_pred -------------------------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCee
Confidence 11224433321122333222 223456789999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc--ccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV--RKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~--~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+-.+.+ +.|.++.+.-.- ++... ..|.++ .+....+.|||||++|+.-
T Consensus 401 ~aQs~d-------------N~i~ifs~~~~~--r~nkk-------K~feGh~vaGys~~v~fSpDG~~l~SG-------- 450 (503)
T KOG0282|consen 401 AAQSMD-------------NYIAIFSTVPPF--RLNKK-------KRFEGHSVAGYSCQVDFSPDGRTLCSG-------- 450 (503)
T ss_pred hhhccC-------------ceEEEEeccccc--ccCHh-------hhhcceeccCceeeEEEcCCCCeEEee--------
Confidence 888754 356666543110 11100 011111 1334568999999998872
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
+..+.++.||- ...+....+..++..+..+.|.|-...-+.++
T Consensus 451 -----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 451 -----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred -----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence 45677899984 23344455556677788899999865544444
No 237
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=3e-05 Score=81.14 Aligned_cols=218 Identities=17% Similarity=0.129 Sum_probs=120.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+.|.|||++++..-+. ...|-++|++.++...-...++- ...+-+.+++ .....
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~~~-F~~lC-------- 154 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGNRG-FSMLC-------- 154 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSE-----EEEEEEETTE-EEEEE--------
T ss_pred cccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCE-----EEEEecCCCc-eEEEe--------
Confidence 456678999999999987554 77899999998877655444442 1122233332 11111
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeee----ecCCC---ccccccccC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVK----EIGPP---AVYTSLDPS 340 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~----~l~~~---~~~~~~~~S 340 (958)
+.+.+..+.+ +|+.. .+... ..+..+.++
T Consensus 155 ------------------------------------------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 155 ------------------------------------------GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp ------------------------------------------TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred ------------------------------------------cCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 2233444444 45322 12222 233566777
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
.++.+++|.+ +.++++-.|+.+...+.....+...........-++|..-+++.+...+|++.-..
T Consensus 193 ~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~- 258 (342)
T PF06433_consen 193 RDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ- 258 (342)
T ss_dssp TTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred CCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC-
Confidence 7888888887 45699999998776555433221110001111223455668888887777776432
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++.+.- .....+||++|+ ..++...++ ..+..+.++..|.|.+-++|....+. ..|+++|..++
T Consensus 259 -g~~gsH-KdpgteVWv~D~--~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tG 322 (342)
T PF06433_consen 259 -GGEGSH-KDPGTEVWVYDL--KTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATG 322 (342)
T ss_dssp ---TT-T-TS-EEEEEEEET--TTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT-
T ss_pred -CCCCCc-cCCceEEEEEEC--CCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCC
Confidence 222211 133457999996 233333333 33345668899999998888876543 46999998885
No 238
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=0.00051 Score=76.27 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=100.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+++|.+.+.||....+ ++|-||++..+- -..+.+.+ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~w--~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNNW--FLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCCc--eeeEEEec-CCCC
Confidence 46788999999999988775 578899986632 34556665 3444
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|++ |.+|.-.. ..+.|--||+.+++.+......+.. +.+++-.|-++.+++..
T Consensus 71 sIE~L~W~e-~~RLFS~g---------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igc------- 129 (691)
T KOG2048|consen 71 SIESLAWAE-GGRLFSSG---------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGC------- 129 (691)
T ss_pred ceeeEEEcc-CCeEEeec---------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeec-------
Confidence 789999995 55554422 4678999999998877655444332 55666668787777651
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee--e-cCCC-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--E-IGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~--~-l~~~-~~~~~~~~SpDGk 344 (958)
..+.|+.++. .++.+ + +... +.+-+++|+|+|.
T Consensus 130 ------------------------------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 130 ------------------------------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred ------------------------------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 1123555554 33221 2 2112 6778899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
+|+..+.+ +-|.+||+.
T Consensus 168 ~i~~Gs~D-------------g~Iriwd~~ 184 (691)
T KOG2048|consen 168 KIAGGSID-------------GVIRIWDVK 184 (691)
T ss_pred EEEecccC-------------ceEEEEEcC
Confidence 99877643 356677765
No 239
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.53 E-value=3.3e-06 Score=82.23 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=110.9
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+.-.+|.++..|--+|+.-.+.+ .|.||+.-|.. +....+...+.+|+.+||.|+.++....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~---------------rrmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA---------------RRMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT----------------GGGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh---------------HHHHHHHHHHHHHhhCCeEEEecccccc
Confidence 45568999999999998744433 78899887732 1111223567789999999999666555
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC----
Q 002164 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (958)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (958)
.|.....-.+-.......|+..+++||.+.+. .+++++-.|.-|=+|..++++- + ..-+|...|+.|...+
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 55432222333456778999999999998764 5799999999999999999855 4 6667777788763211
Q ss_pred ----CCCccccc---chhh----hcHHHHH------hc----CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 800 ----PFGFQNED---RTLW----EATSTYV------EM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 800 ----~~~~~~~~---~~~~----~~~~~~~------~~----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
....+... .... -..+.|. .+ +.+..++.+.+|++.+++.+|.-|. ..+..++...+
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~~ 221 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDNI 221 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT-
T ss_pred hccchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHhc
Confidence 00000000 0000 0001110 11 2345677788999999999999987 66666666655
Q ss_pred HhCCCcEEEEEeCCCCccCC
Q 002164 859 KGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~ 878 (958)
.. ..+++..++|..|.+.
T Consensus 222 ~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 222 NS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp TT----EEEEEETT-SS-TT
T ss_pred CC--CceeEEEecCccchhh
Confidence 44 3688889999999984
No 240
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.52 E-value=2.5e-06 Score=96.52 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=122.1
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC-eE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TL 257 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~ 257 (958)
.+.+.+++ +.+-..+||-++ .|+-.+. ...+.+|++...+...+..+.+. +..++|.|-. ++
T Consensus 362 ~~ef~GHt--~DILDlSWSKn~-fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDry 424 (712)
T KOG0283|consen 362 FCEFKGHT--ADILDLSWSKNN-FLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRY 424 (712)
T ss_pred hhhhhccc--hhheecccccCC-eeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCc
Confidence 34455544 468889999654 6666543 45677778778788888776664 7899999855 44
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~ 335 (958)
++..+ -+ +. +-++++ +.++.-.++- ..++
T Consensus 425 FiSGS---------------------LD--------------------------~K--vRiWsI~d~~Vv~W~Dl~~lIT 455 (712)
T KOG0283|consen 425 FISGS---------------------LD--------------------------GK--VRLWSISDKKVVDWNDLRDLIT 455 (712)
T ss_pred Eeecc---------------------cc--------------------------cc--eEEeecCcCeeEeehhhhhhhe
Confidence 44331 11 22 333344 4444444433 6789
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC-Cce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP-STL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~-~l~ 414 (958)
.++++|||+..++.+ +.+...+|+..+.+...-......... +.....+.++.|.|-.. .++
T Consensus 456 Avcy~PdGk~avIGt-------------~~G~C~fY~t~~lk~~~~~~I~~~~~K----k~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGT-------------FNGYCRFYDTEGLKLVSDFHIRLHNKK----KKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred eEEeccCCceEEEEE-------------eccEEEEEEccCCeEEEeeeEeeccCc----cccCceeeeeEecCCCCCeEE
Confidence 999999999999887 345788888876554332111111100 01112456777876443 355
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecccc---CceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
++ +.+.+|.++|. ....+....++.... ....|+.||++|+.++++. .+|+++.+.
T Consensus 519 VT-------------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs----~VYiW~~~~ 577 (712)
T KOG0283|consen 519 VT-------------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS----WVYIWKNDS 577 (712)
T ss_pred Ee-------------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc----eEEEEeCCC
Confidence 53 45667888873 112221112221111 2368999999999998433 466666544
No 241
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.52 E-value=1.8e-07 Score=101.36 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=86.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC-cEEEEcCCCCC-CCCCC-
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTPI-IGEGD- 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~vl~~~~~~~-~G~G~- 728 (958)
|...+|.|+ . + ..+.|||||+|||.+..+..... .+ -...|+++| ++||.++||-. .|+=.
T Consensus 80 L~LNIwaP~-~-~--a~~~PVmV~IHGG~y~~Gs~s~~----------~y--dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE-V-P--AEKLPVMVYIHGGGYIMGSGSEP----------LY--DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC-C-C--CCCCcEEEEEeccccccCCCccc----------cc--ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 666888898 2 2 22489999999997654432111 11 134789988 88888888522 23210
Q ss_pred -ccc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 729 -EEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 729 -~~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
+.. ........+.|+..|++|+.++ ---||++|.|+|.|+||+.++.+++.. ..+|+.+|+.+|.+.
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 001 1111124588999999999986 336999999999999999998887742 246888888887654
No 242
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.51 E-value=1.1e-06 Score=90.69 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=120.0
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~a 746 (958)
+.|.++++||-. ++...|. .....|+. -|--|+. .|.+-+|.+..- .+-...+.+|+...
T Consensus 51 ~~Pp~i~lHGl~-----------GS~~Nw~----sv~k~Ls~~l~~~v~~---vd~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGLL-----------GSKENWR----SVAKNLSRKLGRDVYA---VDVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEecccc-----------cCCCCHH----HHHHHhcccccCceEE---EecccCCCCccccccCHHHHHHHHHHH
Confidence 478899999932 2222232 22334443 3445666 334455655432 22256778888888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEec--c-CCCCCCC------------CCC--------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARS--G-AYNRTLT------------PFG-------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~--~-~~~~~~~------------~~~-------- 802 (958)
++........ .++.++|||||| -+++..+...|+.+.-+|+.. | .+..... +..
T Consensus 113 i~~v~~~~~~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTRL--DPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHccccccc--CCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 8887654333 479999999999 777777778888776666543 3 1110000 000
Q ss_pred ----------------------cc---cccchhhhc-----HHHHHh---cC---cccccCCCCCCEEEEeeCCCCCCCC
Q 002164 803 ----------------------FQ---NEDRTLWEA-----TSTYVE---MS---PFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 803 ----------------------~~---~~~~~~~~~-----~~~~~~---~s---p~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
+. ......|.- .+.+.+ .+ .+.+ .....|+|+++|.++..++
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccceeEEecCCCCCcC-
Confidence 00 000001110 011111 11 1222 4456899999999999998
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.++-.++.+.+.. +++..++++||++. .++.+.+.+.+.+|+.++
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 6655555555544 79999999999984 677888999999988764
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=5.6e-06 Score=84.44 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=95.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++..|.+||-.++-.+-. +..|.+||++++...+|.... ..+...+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~g------------sssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFG------------SSSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccC------------cceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 457899999999998877633 347999999987766655211 14556789999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+... ..+....+|.. ...-...+..-..+++....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA-------------t~davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA-------------TCDAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe-------------cccceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 87663 11222334431 01111122233445788899999999999997655 46888766553
Q ss_pred CCC---------cEEEeccCCccccC-----CCCCCceEeccCCceEEEEeee
Q 002164 492 DVA---------PRILFDRSSEDVYS-----DPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 492 ~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~spdG~~l~~~~~~ 530 (958)
... ...+.|........ -.....++|.|-|.+|+...+.
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 221 11122221110000 0022347899999999988753
No 244
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.50 E-value=1.1e-05 Score=81.16 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 829 (958)
+.++..+|+++.+|+|||+||..++.++..+|+.|.+.++++|.. .|.+...+....-.... +
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl---------------Ww~n~~~l~~~~~~~~~-~- 190 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL---------------WWHNEAILREIESLKLL-K- 190 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh---------------hhCCHHHhccccccccC-C-
Confidence 334566899999999999999999999999999999999999852 24444444333322222 2
Q ss_pred CCCEEEEe--eCCCCCCCC----ChHHHHHHHHHHHh-CCCcEEEEEeCCCCccC
Q 002164 830 KKPILLVH--GEEDNNSGT----LTMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (958)
Q Consensus 830 ~~P~Lii~--G~~D~~v~~----~~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~ 877 (958)
..++.+.- |+.|..... ...++.+..+.++. .|....+..+|+++|.-
T Consensus 191 ~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 191 TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 33444444 444432110 02234445555555 77888899999888874
No 245
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.49 E-value=3e-07 Score=108.99 Aligned_cols=130 Identities=19% Similarity=0.143 Sum_probs=83.7
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDE 729 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~ 729 (958)
=|...+|.|.....+. ++||+|++|||.+..+..... .......++.++++||.++||-. .|+-..
T Consensus 108 CL~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~~-----------~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSFP-----------PYDGASLAASKDVIVVTINYRLGAFGFLSL 174 (535)
T ss_dssp --EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTSG-----------GGHTHHHHHHHTSEEEEE----HHHHH-BS
T ss_pred HHHHhhhhcccccccc--ccceEEEeecccccCCCcccc-----------cccccccccCCCEEEEEecccccccccccc
Confidence 3777899998754432 599999999997655432000 11123456789999999888532 121111
Q ss_pred ccchh-hHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccC
Q 002164 730 EANDR-FVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (958)
Q Consensus 730 ~~~~~-~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (958)
..... .+...+.|...|++|++++ ---||++|-|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 01111 2456789999999999996 236999999999999999998887753 3689999999984
No 246
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.47 E-value=1.4e-06 Score=86.92 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=139.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC-Cccc---cccccceEEecCCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP-DIYL---NAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~-~~~~---~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
.+....|||||++|+..+ . .+-|-+|+-.+|+.++-.... ...+ ...+.-+.||-|.+.++..+
T Consensus 215 h~EcA~FSPDgqyLvsgS-------v--DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--- 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS-------V--DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--- 282 (508)
T ss_pred chhheeeCCCCceEeecc-------c--cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence 466789999999998844 2 334555566677765422111 1100 01123455666666666431
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCC-C-ccccccccCCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGP-P-AVYTSLDPSPD 342 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~-~-~~~~~~~~SpD 342 (958)
.| +.-.+|++. +|. .+++.. . .++....||.|
T Consensus 283 -------------------------------------qD-------GkIKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 283 -------------------------------------QD-------GKIKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred -------------------------------------cC-------CcEEEEEEe-cchHHHHhhhhhccCeeEEEEccC
Confidence 11 223344444 663 444432 2 77899999999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
+..|+..+. +..+.+.-+..++ .+.. .++...+....|++||..|+-.
T Consensus 318 ~SqiLS~sf-------------D~tvRiHGlKSGK~LKEf-------------rGHsSyvn~a~ft~dG~~iisa----- 366 (508)
T KOG0275|consen 318 NSQILSASF-------------DQTVRIHGLKSGKCLKEF-------------RGHSSYVNEATFTDDGHHIISA----- 366 (508)
T ss_pred cchhhcccc-------------cceEEEeccccchhHHHh-------------cCccccccceEEcCCCCeEEEe-----
Confidence 999987763 4477777776432 2222 2233455678899999988763
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
+.++.+-+|+. ..+...... ...+..+.++..-|..-.-....|+. +.+|++++.+. ....+
T Consensus 367 --------SsDgtvkvW~~--KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQ---vVrsf 430 (508)
T KOG0275|consen 367 --------SSDGTVKVWHG--KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQ---VVRSF 430 (508)
T ss_pred --------cCCccEEEecC--cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccce---EEeee
Confidence 44566777874 222222222 22345566666666654333334443 46999998872 12212
Q ss_pred -ccCC--ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 500 -DRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 500 -~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
...- ++... ...||.|+|++....+ ..||-+...+|+.++..
T Consensus 431 sSGkREgGdFi~------~~lSpkGewiYcigED---------------------~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 431 SSGKREGGDFIN------AILSPKGEWIYCIGED---------------------GVLYCFSVLSGKLERTL 475 (508)
T ss_pred ccCCccCCceEE------EEecCCCcEEEEEccC---------------------cEEEEEEeecCceeeee
Confidence 1111 11111 3479999998887632 14777787778776543
No 247
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.46 E-value=0.0001 Score=83.40 Aligned_cols=369 Identities=13% Similarity=0.093 Sum_probs=185.5
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
+..+.+++|.-||..+..++.. . +.+.+||++. .+..-++.-.+
T Consensus 244 ~g~VtslSFrtDG~p~las~~~----------------------~----------G~m~~wDLe~----kkl~~v~~nah 287 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRS----------------------N----------GDMAFWDLEK----KKLINVTRNAH 287 (910)
T ss_pred ccceeEEEeccCCCeeEEeccC----------------------C----------ceEEEEEcCC----Ceeeeeeeccc
Confidence 4567788888888887766652 1 3688999943 22222221112
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe-cCCeEEEEEecCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLR 266 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~ 266 (958)
.+.+....+-| |+-|+++.. .+....+|+.|...|.+|.|-...+- .+....+++- ..|..|.....+..
T Consensus 288 ~~sv~~~~fl~-~epVl~ta~------~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 288 YGSVTGATFLP-GEPVLVTAG------ADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred cCCcccceecC-CCceEeecc------CCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcc
Confidence 23566677776 788888764 34577899999777777777543221 1112344454 45555554421110
Q ss_pred CCC------------CC----CCCCCCCCceeeecCCcccccchhhhhc-cCchh----hhHHHHhhcceEEEEEc-C--
Q 002164 267 GDP------------PK----KPLVPLGPKMQSNEKRDIIQVRTFQDLL-KDEYD----EDLFDYYATTQLVLVSL-D-- 322 (958)
Q Consensus 267 ~~~------------~~----~~~~~~~~~~~~~~~~~~~~~r~~~d~~-~~~~~----~~~~~~~~~~~l~~~~~-~-- 322 (958)
-.. .. +...+.+ ..+.+..+.-++- .+. .+.+. .....+.+..+++.++. +
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~--~~~~~~~k~p~i~---~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVN--VFSTEKLKLPPIV---EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred hhhhhhhHHHHhHhhccccccccccccc--ccchhhhcCCcce---eeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 000 00 0000000 0000000000000 000 00000 01111124556666666 3
Q ss_pred -CeeeecCC----C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc-CCccccCccccc
Q 002164 323 -GTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIPIAFN 395 (958)
Q Consensus 323 -g~~~~l~~----~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~-~~~~~~~p~~~~ 395 (958)
|+-..-+. . .....++.|+-|+..+.... .+.|.+++++.+-.+.-.. .+...
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S-------------~G~Id~fNmQSGi~r~sf~~~~ah~------- 493 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS-------------KGTIDRFNMQSGIHRKSFGDSPAHK------- 493 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEecc-------------CCeEEEEEcccCeeecccccCcccc-------
Confidence 22222222 2 45678889999988776653 2489999999776543221 11111
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEE
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~ 473 (958)
..+.++ +-||..-... ..+..+.+-.|+. .++. .+.. .......+.++.....++..
T Consensus 494 ---~~V~gl--a~D~~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 494 ---GEVTGL--AVDGTNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred ---CceeEE--EecCCCceEE-----------EccCcceEEEEec---CCcc--eeeeeccCCCcceeeeeehhhhhhhh
Confidence 122333 3343321111 1244566777774 3332 1211 11122334444444444333
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
.. + ..|.++|..+. +....+......+.. +.|||||+||+...++. .
T Consensus 553 ~d-d---f~I~vvD~~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------t 599 (910)
T KOG1539|consen 553 LD-D---FSIRVVDVVTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------T 599 (910)
T ss_pred cC-c---eeEEEEEchhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------c
Confidence 22 1 45777776652 222233333333333 78999999999988542 5
Q ss_pred EEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002164 554 LDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d 615 (958)
|.+||+-++...-...-+.. ++ ..+|||+|+.|+.+..+.. .||+|.
T Consensus 600 Ir~wDlpt~~lID~~~vd~~-----~~-------sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSP-----CT-------SLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred EEEEeccCcceeeeEecCCc-----ce-------eeEECCCCCEEEEEEecCc---eEEEEE
Confidence 99999998876544333322 12 3579999999998887533 577774
No 248
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.45 E-value=2.5e-05 Score=78.79 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=78.5
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
..+.+...+|..+...-.+-+... ...+..+||-+||.| |+.+.|. .....|.+.|+.++..+
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~~--~gs~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN 69 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSLP--SGSPLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGIN 69 (297)
T ss_pred EEEEcccccCceEEEEEEEEecCC--CCCCceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeC
Confidence 345555666655444333322211 123467999999987 4445553 33457888999999955
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+ +|.|....+.+... .-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++...| ..++++++|+
T Consensus 70 ~---PGf~~t~~~~~~~~-~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 70 Y---PGFGFTPGYPDQQY-TNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C---CCCCCCCCCccccc-ChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 45555544322111 1111223334444443354 79999999999999999999985 4577777764
No 249
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.44 E-value=5.7e-06 Score=80.17 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=67.9
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEe
Q 002164 759 SKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (958)
+.+.++|||.|+.+++.++ .....+++++++++|+..... ..... .+....+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~----------~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPP----------ELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTC----------GGCCCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhh----------hccccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667789999999999743100 00000 00011111 1112346779999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+++|+.|| +..+.++.+++. .+++.++++||...
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred cCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 99999999 999999999885 48999999999763
No 250
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.43 E-value=0.00016 Score=80.91 Aligned_cols=363 Identities=13% Similarity=0.108 Sum_probs=202.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhccccc--------ceeeceeecCC-----CCCccceeeEeceeEEEccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPE--------EKLAGLRIDGK-----CNTRSRMSFYTGIGIHQLFPDGKL 176 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~dg~~ 176 (958)
.+.++.|++|+..+++++++..-.++++-.-+ ..+.+..+-.+ +....+.+..+.+.+|+.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 57889999999999999887443344332111 11122222112 11222334445667776643 211
Q ss_pred CceeeeccCCCCCcc-cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCCccccccccceE-Eec
Q 002164 177 GQEIEIQGFPDGAKL-NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFV-WVN 253 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~-~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~-wsp 253 (958)
...++. +++..+ ......-+++.++.+. ..+|+++|.+..+..+ +....+. +.++. |-|
T Consensus 273 ~~~~~~---~~~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~ 334 (775)
T KOG0319|consen 273 VYKQRQ---SDSEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGP 334 (775)
T ss_pred hhhhcc---CCchhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCC
Confidence 111111 111112 2223344566666654 6689999888776543 3322222 44555 558
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~- 331 (958)
+.+.|++++ +...|-++++ +-....+..+
T Consensus 335 e~~~laVAT-------------------------------------------------Ns~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 335 EESHLAVAT-------------------------------------------------NSPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred ccceEEEEe-------------------------------------------------CCCceEEEecCCCceEEEeCch
Confidence 889999872 1234556677 4445544444
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+.+.+...+|-+|+..+. ++.+.+|.++.+..+.+.... .+++...+..++.+..|.
T Consensus 366 e~vlSL~~~~~g~llat~sK-------------D~svilWr~~~~~~~~~~~a~--------~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSK-------------DKSVILWRLNNNCSKSLCVAQ--------ANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred hheeeeeecccCcEEEEecC-------------CceEEEEEecCCcchhhhhhh--------hcccccccceeeecccCc
Confidence 55666664457756665553 347889988544333222110 112223445677766666
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCC--CCCCceEE------EeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
.++.. ++.+..+-+|++ +. +...+..+ ..++-+++.++.+|+.+.|+..+.+++ ..|
T Consensus 425 sffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt--aKi 489 (775)
T KOG0319|consen 425 SFFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT--AKI 489 (775)
T ss_pred cEEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc--eee
Confidence 55553 244556667765 11 11111222 135667889999999998888877766 789
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
|.++ + .....+...+...++. ++|+|..+.++..+.+ ..+.+|.+++..
T Consensus 490 W~le-~---~~l~~vLsGH~RGvw~------V~Fs~~dq~laT~SgD---------------------~TvKIW~is~fS 538 (775)
T KOG0319|consen 490 WDLE-Q---LRLLGVLSGHTRGVWC------VSFSKNDQLLATCSGD---------------------KTVKIWSISTFS 538 (775)
T ss_pred eccc-C---ceEEEEeeCCccceEE------EEeccccceeEeccCC---------------------ceEEEEEeccce
Confidence 9887 2 2334455666666666 8999998877765421 259999999888
Q ss_pred eEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 564 KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
..+-+++... ..+ ..+|-.+|+.++-..+ ..-+-+|+..+++..
T Consensus 539 ClkT~eGH~~------aVl-----ra~F~~~~~qliS~~a----dGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 539 CLKTFEGHTS------AVL-----RASFIRNGKQLISAGA----DGLIKLWNIKTNECE 582 (775)
T ss_pred eeeeecCccc------eeE-----eeeeeeCCcEEEeccC----CCcEEEEeccchhhh
Confidence 7766665432 111 2456666766654333 234677777666543
No 251
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=2.6e-05 Score=78.21 Aligned_cols=263 Identities=16% Similarity=0.093 Sum_probs=144.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......||+-|.+||..- .++.|.+||..+-..-++....-.. +.+++||+||+.|+.++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS------- 84 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSS------- 84 (405)
T ss_pred ccceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeec-------
Confidence 356789999999999954 3667888888775444433322222 77999999999999762
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~ 347 (958)
....+-.+|+ .|. .+++.-+..+....|.|-.+..+
T Consensus 85 ------------------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 85 ------------------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred ------------------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 1123566777 663 33443335677788888555444
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
+...-+ ..-++.++.....+.|...+..+. + ...+...|.+-|++|+.-
T Consensus 123 va~~~~------------~sp~vi~~s~~~h~~Lp~d~d~dl-----n---~sas~~~fdr~g~yIitG----------- 171 (405)
T KOG1273|consen 123 VATIME------------ESPVVIDFSDPKHSVLPKDDDGDL-----N---SSASHGVFDRRGKYIITG----------- 171 (405)
T ss_pred EEEEec------------CCcEEEEecCCceeeccCCCcccc-----c---cccccccccCCCCEEEEe-----------
Confidence 433111 123345554444444433221110 0 001122477888887762
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc-C--CCCCCCcEEEeccCCc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDRSSE 504 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~ 504 (958)
...+.+.+++++.++=-..-+++. -..+..+.++-.|+.|++.+.+.- .+.|-+. + .+.++++... ....
T Consensus 172 --tsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~K~q 244 (405)
T KOG1273|consen 172 --TSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--HKLQ 244 (405)
T ss_pred --cCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--HHHH
Confidence 345667778752221000111111 234667889999999988764432 4555433 1 1111121110 0001
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
++-....=....||.||.+++.+.. ..-.||+|....|...++..+..
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1100000001568999999877652 11259999999999988877664
No 252
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1.5e-05 Score=90.45 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=90.4
Q ss_pred eEEEEEcCCeeeecCCCccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccc
Q 002164 315 QLVLVSLDGTVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~ 393 (958)
.||.+.-..-+..+.....++.++|.| |.++++-.+ .++++.||.+...++..-++..
T Consensus 393 RLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS-------------LD~KvRiWsI~d~~Vv~W~Dl~-------- 451 (712)
T KOG0283|consen 393 RLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS-------------LDGKVRLWSISDKKVVDWNDLR-------- 451 (712)
T ss_pred EeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc-------------cccceEEeecCcCeeEeehhhh--------
Confidence 344433222334444447889999999 666665544 3569999999876654444332
Q ss_pred ccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce---EEEe------eccccCceeee
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHK------LDLRYGGISWC 464 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l~~------~~~~~~~~~~s 464 (958)
.-+..+.|+|||+..++- ...+..++|+. .+-+.. .+.. ...++.++.|.
T Consensus 452 -----~lITAvcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 452 -----DLITAVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred -----hhheeEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 345789999999988773 23344555553 222211 1110 12256777777
Q ss_pred cC-CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 465 DD-SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 465 pD-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|- ...|+.++++ ++|.++|.... +....+...... .....-+|+.||++|+.+.
T Consensus 511 p~~~~~vLVTSnD----SrIRI~d~~~~--~lv~KfKG~~n~----~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 511 PGDPDEVLVTSND----SRIRIYDGRDK--DLVHKFKGFRNT----SSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CCCCCeEEEecCC----CceEEEeccch--hhhhhhcccccC----CcceeeeEccCCCEEEEee
Confidence 64 3356666554 45666775332 222222211110 0111256899999999987
No 253
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.38 E-value=3.5e-06 Score=81.20 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=127.7
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
..++..||..+.+..|.-++ +.+-.+++-|++. ....++..+++..+++||.|++ +
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-------~~~g~~~va~a~G--------------v~~~fYRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-------KASGRLVVAGATG--------------VGQYFYRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccccCCC-------CCCCcEEecccCC--------------cchhHhHHHHHHhhccCceEEE---E
Confidence 56788899999999884333 1332233333220 0111233556667789999999 5
Q ss_pred CCCCCCCccc------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe-ccC-
Q 002164 722 PIIGEGDEEA------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR-SGA- 793 (958)
Q Consensus 722 ~~~G~G~~~~------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~~~- 793 (958)
+++|.|++.. ...+.+....|+.++++++.+...- .....+|||+||.+...+ .+++ ++.+.... ++.
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~--~P~y~vgHS~GGqa~gL~-~~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPG--HPLYFVGHSFGGQALGLL-GQHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCC--CceEEeeccccceeeccc-ccCc-ccceeeEeccccc
Confidence 5566666633 1345566789999999999885322 368899999999875544 4443 33333222 211
Q ss_pred CC----------------CCCCCCCccc---------cc----chhhhcHHHHHhc------Ccc-----cccCCCCCCE
Q 002164 794 YN----------------RTLTPFGFQN---------ED----RTLWEATSTYVEM------SPF-----MSANKLKKPI 833 (958)
Q Consensus 794 ~~----------------~~~~~~~~~~---------~~----~~~~~~~~~~~~~------sp~-----~~~~~~~~P~ 833 (958)
.+ ....+..+.. .. .....+-..|-++ +|. +..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 00 0000000000 00 0000000111111 121 2235678999
Q ss_pred EEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 002164 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~fl 894 (958)
+.+...+|+.+| +.....+....+.+ +.+...++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 77777777777665 6777777754 887544444466777888886
No 254
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=8.3e-06 Score=85.26 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=115.0
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.++.+.+......++|++||..|+....+ +.+.||+.... ..
T Consensus 137 v~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~t 178 (398)
T KOG0771|consen 137 VYQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----LT 178 (398)
T ss_pred HhHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----hh
Confidence 34444444344678889999888877654 46788876431 12
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc-eeeccCCCCccccccccceEEecCC---e
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS---T 256 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG---~ 256 (958)
.+....+.+.+....|||||+.|+++.. ....+|++++|. ..++++.... ..+..++|+-|+ .
T Consensus 179 ~l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~---~~~~~cRF~~d~~~~~ 245 (398)
T KOG0771|consen 179 ILEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKD---EMFSSCRFSVDNAQET 245 (398)
T ss_pred hhhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccc---hhhhhceecccCCCce
Confidence 2221223457899999999999999752 266677777763 3445533332 237789999776 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC----eeeecCCC
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGPP 331 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g----~~~~l~~~ 331 (958)
+..++..... +.-.++.+.+ .+ ..++....
T Consensus 246 l~laa~~~~~---------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 246 LRLAASQFPG---------------------------------------------GGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEEEEecCCC---------------------------------------------CceeEEEeeeeccccccchhhhhhc
Confidence 3333311100 0111233333 33 33333333
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+++++.|+|||+++..+++ +.+-+++...= +.+...+.. +..-+..+.|+||.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~d-------------GsVai~~~~~l--q~~~~vk~a---------H~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMD-------------GSVAIYDAKSL--QRLQYVKEA---------HLGFVTGLTFSPDS 336 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccC-------------CcEEEEEecee--eeeEeehhh---------heeeeeeEEEcCCc
Confidence 578899999999999999864 36777776532 222221111 11345789999998
Q ss_pred CCceE
Q 002164 411 PSTLY 415 (958)
Q Consensus 411 ~~l~~ 415 (958)
+.++-
T Consensus 337 r~~~s 341 (398)
T KOG0771|consen 337 RYLAS 341 (398)
T ss_pred Ccccc
Confidence 87664
No 255
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=93.56 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred HHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc--HHHHHHHHHHH
Q 002164 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRW 893 (958)
Q Consensus 817 ~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~f 893 (958)
+...++...+.++. +|+|++||.+|..|| ..++..++.+.+.. +.+..++++++|....... .......+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 45556666777777 699999999999999 99999999998875 6788899999999864232 34788899999
Q ss_pred HHHhh
Q 002164 894 LQKYC 898 (958)
Q Consensus 894 l~~~l 898 (958)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99876
No 256
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.35 E-value=1.2e-05 Score=83.55 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=48.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
..+...+|+||+..+.+.+ ....+++||+..|............ +..++|.|-+++|+..+
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASKS 184 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhhc
Confidence 4789999999999999955 3678899999988876665444432 67899999999998663
No 257
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.34 E-value=0.00025 Score=74.31 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=84.8
Q ss_pred cceEEEEEc-CCeeeecCCCccccccccC-CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~S-pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
..+|++++. +++.+.+..+. .....+. +||+ |++.... .+.++|.++++.+.+...+... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG--------------GIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT--------------CEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC--------------ceEEEecCCCcEEEEeeccCCC-c
Confidence 357999999 66665544433 4455566 6655 4444422 5667788888877776642111 0
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceE
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (958)
+ ...+..+.++|||+ +++. +........ ...+.+|+++. + ++.+.+...-.....++|+|||+.|
T Consensus 84 ~------~~~~ND~~vd~~G~-ly~t-~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 P------FNRPNDVAVDPDGN-LYVT-DSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp C------TEEEEEEEE-TTS--EEEE-EECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred c------cCCCceEEEcCCCC-EEEE-ecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 1 13456789999998 5443 332111110 11167999984 4 4555555444455689999999998
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++..... .+||+++++..
T Consensus 149 yv~ds~~---~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDAD 166 (246)
T ss_dssp EEEETTT---TEEEEEEEETT
T ss_pred eeccccc---ceeEEEecccc
Confidence 8764333 46888888653
No 258
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.32 E-value=4.2e-06 Score=88.50 Aligned_cols=108 Identities=11% Similarity=-0.094 Sum_probs=72.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (958)
.|++|++||.... ....+.......++ ..+|.|+++|..+. +..... ........+++...
T Consensus 36 ~p~vilIHG~~~~-------------~~~~~~~~l~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSS-------------GEESWISDLRKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCC-------------CCCcHHHHHHHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHH
Confidence 5889999995311 10111122233344 46899999665432 211111 11123345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.++|.++|||+||.+|..++.+.|++++.++...|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88888775567789999999999999999999999899999998875
No 259
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=6.8e-06 Score=81.20 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHc--CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEec---cCCCCCCCCCCccc------
Q 002164 740 VACAEAAVEEVVRR--GVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARS---GAYNRTLTPFGFQN------ 805 (958)
Q Consensus 740 ~~D~~~av~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~---~~~~~~~~~~~~~~------ 805 (958)
..|+...++.+... +..-....+++||||||.+|..+|.+.. -...+....+ |.++.........+
T Consensus 53 ~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~ 132 (244)
T COG3208 53 LTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLAD 132 (244)
T ss_pred cccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHH
Confidence 34444555555443 1122247999999999999999987531 1133333332 22221100000000
Q ss_pred ------ccchhhhcHHHHHhcCc-----------ccc--cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 806 ------EDRTLWEATSTYVEMSP-----------FMS--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 806 ------~~~~~~~~~~~~~~~sp-----------~~~--~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
.....+++++...-.-| +.+ -..+.+|+.++.|++|..|. .++...+.+..+ ...+
T Consensus 133 l~~lgG~p~e~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t~---~~f~ 207 (244)
T COG3208 133 LVDLGGTPPELLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVS--RDELGAWREHTK---GDFT 207 (244)
T ss_pred HHHhCCCChHHhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhcc--HHHHHHHHHhhc---CCce
Confidence 00122344332221111 111 13567999999999999987 555555555443 4589
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 867 LVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 867 ~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.+|+| ||.+. ..+. +++++++.+++
T Consensus 208 l~~fdG-gHFfl-~~~~----~~v~~~i~~~l 233 (244)
T COG3208 208 LRVFDG-GHFFL-NQQR----EEVLARLEQHL 233 (244)
T ss_pred EEEecC-cceeh-hhhH----HHHHHHHHHHh
Confidence 999998 99985 2333 34455555554
No 260
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.31 E-value=6.4e-06 Score=85.32 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=151.9
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
.-+.|.+-++. .++...||+||.+++....+ +-|.+|+..- .
T Consensus 129 nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~g---------------------------------G~iKyWqpnm----n 170 (464)
T KOG0284|consen 129 NFETILQAHDS-PVRTMKWSHNGTWMISGDKG---------------------------------GMIKYWQPNM----N 170 (464)
T ss_pred eHHHHhhhhcc-cceeEEEccCCCEEEEcCCC---------------------------------ceEEecccch----h
Confidence 33556677776 68899999999999876654 3466676532 2
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccCCCCccccccccceEEecCCe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
..+.+... +...+...+|||.....+.+++ .+.|-+||..- .+++.|.. ++.. +.++.|.|.-.
T Consensus 171 nVk~~~ah-h~eaIRdlafSpnDskF~t~Sd---------Dg~ikiWdf~~~kee~vL~G-Hgwd----VksvdWHP~kg 235 (464)
T KOG0284|consen 171 NVKIIQAH-HAEAIRDLAFSPNDSKFLTCSD---------DGTIKIWDFRMPKEERVLRG-HGWD----VKSVDWHPTKG 235 (464)
T ss_pred hhHHhhHh-hhhhhheeccCCCCceeEEecC---------CCeEEEEeccCCchhheecc-CCCC----cceeccCCccc
Confidence 33333221 1236889999997777776653 55677777554 34455533 3322 77999999988
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-cc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AV 333 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~ 333 (958)
.|+.... ..-+-++|. +|. +-.+... .-
T Consensus 236 Liasgsk-------------------------------------------------DnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 236 LIASGSK-------------------------------------------------DNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred eeEEccC-------------------------------------------------CceeEeecCCCcchhhhhhhccce
Confidence 8886521 112334455 552 3333333 56
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..+.|+|+|.+|+..+.+ ..+.++|+.. .+.|.... +....+..+.|+|=-..|
T Consensus 267 Vl~~~f~~n~N~Llt~skD-------------~~~kv~DiR~--mkEl~~~r----------~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKD-------------QSCKVFDIRT--MKELFTYR----------GHKKDVTSLTWHPLNESL 321 (464)
T ss_pred EEEEEEcCCCCeeEEccCC-------------ceEEEEehhH--hHHHHHhh----------cchhhheeeccccccccc
Confidence 7889999999999988743 3788888872 11221111 222456788999977776
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-E-EeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+.. .+..+.|+.+.+ ...++.. + ..++..+.+++|.|=|..|+..+++.+ .+.|.-.
T Consensus 322 fts------------gg~Dgsvvh~~v---~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t--~rfw~r~ 380 (464)
T KOG0284|consen 322 FTS------------GGSDGSVVHWVV---GLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT--VRFWTRN 380 (464)
T ss_pred eee------------ccCCCceEEEec---cccccccCCCcccccceeeeeccccceeEeecCCCcc--eeeeccC
Confidence 653 123445655554 2222221 2 345677889999999988877665554 5566433
No 261
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=9.5e-05 Score=77.47 Aligned_cols=213 Identities=19% Similarity=0.103 Sum_probs=121.7
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeec-CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~- 241 (958)
.|+.++..+ +....+. .+ . .....+. +|| .|+++. ...+.++|.++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LP--G-PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SS--S-EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cC--C-CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 677777633 3333332 22 2 3444555 665 455543 345566699998887776542111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
-......+++.|||+ |+++....... ... ....||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 112256889999998 66652211110 000 1156999998
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--Cce---EEEeccCCccccCccccc
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF---VRELCDLPLAEDIPIAFN 395 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~---~~~l~~~~~~~~~p~~~~ 395 (958)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ +.. .+.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 7776666555 556788999999999887633 3479999886 331 22232222111
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee-cCCceEEEEE
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYES 474 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~ 474 (958)
..+.++.+..+|+ |++ +. ...+.|++++. +|.....+.........++|. +|.+.|+.++
T Consensus 184 ---g~pDG~~vD~~G~-l~v-a~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN-LWV-AD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS--EEE-EE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC-EEE-EE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1246788999986 332 11 23567899984 555555554443466778884 7777777664
No 262
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=1.5e-05 Score=81.52 Aligned_cols=228 Identities=15% Similarity=0.154 Sum_probs=140.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~~~lt~~~~~~ 241 (958)
..|++||..+ |+. ++-|.++++ .+...+++.-|+.|+.++. ...+.+|+.++- +..+.-..++.
T Consensus 130 ~tikv~D~~t-g~~--e~~LrGHt~--sv~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h- 194 (406)
T KOG0295|consen 130 ATIKVFDTET-GEL--ERSLRGHTD--SVFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEH- 194 (406)
T ss_pred ceEEEEEccc-hhh--hhhhhcccc--ceeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCccc-
Confidence 4799999854 433 566777663 4889999999999998763 223566665541 22222222222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
.+..+.+-|-|..|+... ....|...+.
T Consensus 195 ---~vS~V~f~P~gd~ilS~s-------------------------------------------------rD~tik~We~ 222 (406)
T KOG0295|consen 195 ---GVSSVFFLPLGDHILSCS-------------------------------------------------RDNTIKAWEC 222 (406)
T ss_pred ---ceeeEEEEecCCeeeecc-------------------------------------------------cccceeEEec
Confidence 277888999998888551 1123455555
Q ss_pred -CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCccccccc
Q 002164 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 -~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~ 397 (958)
+| ....+... ..+..+..+-||..++.-+++ +.+.+|-+.++..+.+ ..+.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE------------ 277 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE------------ 277 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc------------
Confidence 66 45555555 778888999999888776643 4899999887643332 2221
Q ss_pred ccCcceeeeecCCCCceEE--EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 398 RKGMRSINWRSDKPSTLYW--AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.-+.-++|.|+..+--.. +...+++......+.+..|-+|++ ..|.-.-.|..++..+++++|+|-|++|+...+
T Consensus 278 -h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 278 -HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred -cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 112345566654321111 001111112222234456788886 345555666777888999999999999998877
Q ss_pred ccccceEEEEEc
Q 002164 476 YKTRRTRTWVIS 487 (958)
Q Consensus 476 ~~~~~~~l~~~~ 487 (958)
+++ .++|.+.
T Consensus 355 Dkt--lrvwdl~ 364 (406)
T KOG0295|consen 355 DKT--LRVWDLK 364 (406)
T ss_pred CCc--EEEEEec
Confidence 766 5666654
No 263
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.29 E-value=1.5e-05 Score=76.15 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred CCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 697 ~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
|.......+..|+++|+.|+.+|- .-| +.....-++...|+.+.+++..++- ..+++.|+|.|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvds---l~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDS---LRY---FWSERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEech---HHH---HhhhCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHH
Confidence 444456778899999999998433 222 1222333577889999999988873 34699999999999888888
Q ss_pred HHhCCC----ceeEEEEeccCCCCCC--CCCCcccccchhhhcHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChH
Q 002164 777 LAHAPH----LFCCGIARSGAYNRTL--TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~ 849 (958)
..+-|+ +++.+++.++.....+ ...++.... ... ..+.+...++++. .|++.|+|++|.-..|+
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~-----~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp-- 156 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMG-----GDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCP-- 156 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCC-----CCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCc--
Confidence 777663 6788888776432111 100110000 000 0123444455565 49999999887654422
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.++. ..++.+..|| ||.|. .+...+.+.|++-++
T Consensus 157 -------~l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 157 -------SLRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred -------cccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 1222 3568888998 77773 444556666666554
No 264
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.28 E-value=1.1e-05 Score=83.83 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=138.9
Q ss_pred ccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-ec
Q 002164 156 RSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PL 234 (958)
Q Consensus 156 ~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~l 234 (958)
..+++.+..|.+|++.... ......|.+ ..+.+....+-+|+++++-... ..++.+|+++....+ .|
T Consensus 190 latgg~Dr~Ik~W~v~~~k-~~~~~tLaG--s~g~it~~d~d~~~~~~iAas~---------d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEK-SELISTLAG--SLGNITSIDFDSDNKHVIAASN---------DKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred hhhcchhhhhhhhhcccch-hhhhhhhhc--cCCCcceeeecCCCceEEeecC---------CCceeeeeccchhhhhhh
Confidence 3334444578889884411 111222322 2347889999999999887542 456677777665543 33
Q ss_pred cCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 235 FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 235 t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
+. ..+. +....+.-....++....+... +.+.....-.. +.+.....-.|..-...+ .++-....
T Consensus 258 sG-Htdk----Vt~ak~~~~~~~vVsgs~DRti---K~WDl~k~~C~-----kt~l~~S~cnDI~~~~~~--~~SgH~Dk 322 (459)
T KOG0288|consen 258 SG-HTDK----VTAAKFKLSHSRVVSGSADRTI---KLWDLQKAYCS-----KTVLPGSQCNDIVCSISD--VISGHFDK 322 (459)
T ss_pred cc-cccc----eeeehhhccccceeeccccchh---hhhhhhhhhee-----ccccccccccceEeccee--eeeccccc
Confidence 33 3222 4455555444333332221111 11111000000 000000000000000000 00000123
Q ss_pred eEEEEEc-CCeeee-cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 315 QLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 315 ~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
.|-.+|. ++..+. +..++.++++..|+||..|...+.+ ..+.++|+.+.+.+....-+...
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD-------------dtl~viDlRt~eI~~~~sA~g~k---- 385 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD-------------DTLKVIDLRTKEIRQTFSAEGFK---- 385 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC-------------CceeeeecccccEEEEeeccccc----
Confidence 3666665 554333 3333788999999999999877532 37889999988877655433221
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-EEee--ccccCceeeecCCce
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKL--DLRYGGISWCDDSLA 469 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~--~~~~~~~~~spDg~~ 469 (958)
.+ .....+.|||||.+++.- +..+.||+|++ .+++... +... +..+..++|+|-|+.
T Consensus 386 --~a--sDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 386 --CA--SDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred --cc--cccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 01 123568899999988762 55778999996 4555444 4222 224788999999999
Q ss_pred EEEEEeccccceEEE
Q 002164 470 LVYESWYKTRRTRTW 484 (958)
Q Consensus 470 l~~~~~~~~~~~~l~ 484 (958)
|+....... ..||
T Consensus 446 Llsadk~~~--v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKA--VTLW 458 (459)
T ss_pred hhcccCCcc--eEec
Confidence 887754332 4455
No 265
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.26 E-value=1.8e-05 Score=84.00 Aligned_cols=245 Identities=13% Similarity=0.016 Sum_probs=143.2
Q ss_pred ChhHHHhh-cCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 99 PPEIREIV-DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
|....+.+ ....++..-++|||+.|+..... .+|-|||+...
T Consensus 455 PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAap---- 497 (705)
T KOG0639|consen 455 PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAAP---- 497 (705)
T ss_pred ccccccccCcccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccCC----
Confidence 33333444 34467788899999999875532 47889999541
Q ss_pred ceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe
Q 002164 178 QEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
..+.-..++..+ .....+.|||.+ |+|..- ...+|.+||+......+-..+...+ +..+..|+||.
T Consensus 498 TprikaeltssapaCyALa~spDak-vcFscc--------sdGnI~vwDLhnq~~VrqfqGhtDG----ascIdis~dGt 564 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAISPDAK-VCFSCC--------SDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISKDGT 564 (705)
T ss_pred CcchhhhcCCcchhhhhhhcCCccc-eeeeec--------cCCcEEEEEcccceeeecccCCCCC----ceeEEecCCCc
Confidence 111111233222 677788999986 666542 2457888888765544333333222 67888999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVY 334 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~ 334 (958)
.|+.... ...+.-+|+ +|..-+-.+. ..+
T Consensus 565 klWTGGl-------------------------------------------------DntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 565 KLWTGGL-------------------------------------------------DNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred eeecCCC-------------------------------------------------ccceeehhhhhhhhhhhhhhhhhh
Confidence 9985410 122444555 5522111122 567
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+...+|.|.||++.... +++++....+.+..+|..+. .-+-++.|++=|++.+
T Consensus 596 fSLg~cP~~dWlavGMen-------------s~vevlh~skp~kyqlhlhe-------------ScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMEN-------------SNVEVLHTSKPEKYQLHLHE-------------SCVLSLKFAYCGKWFV 649 (705)
T ss_pred eecccCCCccceeeeccc-------------CcEEEEecCCccceeecccc-------------cEEEEEEecccCceee
Confidence 788899999999998743 37777777766666665543 2345788999999766
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
-+ +.++-+-.|.. --|...-+. +....+.....|-|.++|+..+.++- ..+|.+
T Consensus 650 St-------------GkDnlLnawrt--PyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkk--ATVYeV 703 (705)
T KOG0639|consen 650 ST-------------GKDNLLNAWRT--PYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKK--ATVYEV 703 (705)
T ss_pred ec-------------CchhhhhhccC--ccccceeec-cccCcceeeeeccCceEEEecCCCcc--eEEEEE
Confidence 53 22333333332 123222222 22334455567788888887764432 345543
No 266
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.25 E-value=6.5e-05 Score=75.75 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred CCCcccceeec-------CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC--CccccccccceEEecCCeE
Q 002164 187 DGAKLNFVTWS-------QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP--DIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 187 ~~~~~~~~~wS-------PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~--~~~~~~~~~~~~wspDG~~ 257 (958)
++..+..-.|= |+-...|.+++ ..-|.+||.-+|+.+.-...- ...+.+ ..+++|||||+.
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr---------~~PIh~wdaftG~lraSy~~ydh~de~ta-AhsL~Fs~DGeq 172 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSR---------DQPIHLWDAFTGKLRASYRAYDHQDEYTA-AHSLQFSPDGEQ 172 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccc---------cCceeeeeccccccccchhhhhhHHhhhh-heeEEecCCCCe
Confidence 34455555664 55555555442 456888899899876432111 111111 348999999999
Q ss_pred EEEE
Q 002164 258 LVCT 261 (958)
Q Consensus 258 l~~~ 261 (958)
|+..
T Consensus 173 lfaG 176 (406)
T KOG2919|consen 173 LFAG 176 (406)
T ss_pred Eeec
Confidence 9965
No 267
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.20 E-value=5.3e-05 Score=76.38 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred eEEEEEc-CCeeeecCCC-------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccC
Q 002164 315 QLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDL 384 (958)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~-------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~ 384 (958)
-|.++|. +|+.+--... ....++.|||||.+|+..-++ .|.++|+. |......+..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykr--------------cirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKR--------------CIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccc--------------eEEEeeccCCCCCCcchhhh
Confidence 3777888 8876543322 223478999999999866533 78888874 2222222221
Q ss_pred CccccCcccccccccCcceeeeecCCC-CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceee
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKP-STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 463 (958)
..... +...-+.-++|||-.. .+++- . -+.+-.||..+ +.+....+....+.+..+.|
T Consensus 200 ~~~k~------gq~giisc~a~sP~~~~~~a~g-s----------Y~q~~giy~~~----~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 200 TKGKF------GQKGIISCFAFSPMDSKTLAVG-S----------YGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred hcccc------cccceeeeeeccCCCCcceeee-c----------ccceeeeEecC----CCCceeeecccCCCeeeEEe
Confidence 11000 0011234578888555 44431 0 02222355544 33334445666777888999
Q ss_pred ecCCceEEEEEecc
Q 002164 464 CDDSLALVYESWYK 477 (958)
Q Consensus 464 spDg~~l~~~~~~~ 477 (958)
.+||.+|+..+..+
T Consensus 259 ~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 259 CEDGNKLFSGARKD 272 (406)
T ss_pred ccCcCeecccccCC
Confidence 99999987776544
No 268
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=80.00 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=80.7
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
+.+.+.++..++ ++..++-+|.. + .-|++++.|||...... |. .++..+.. .-..++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~LS-----------fA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSALS-----------FA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccchh-----------HH----HHHHHHHhhcceeEE
Confidence 356677766554 56666666642 1 26999999997533211 11 23334443 345667
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEec
Q 002164 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARS 791 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~ 791 (958)
+ +|.+|+|++... +-..+....|+.+.+.++-.. ++.+|+++||||||.++.+.|... |. +.+++.+.
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 8 777899987542 222456788888887777543 345899999999999999888753 44 55555544
No 269
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.17 E-value=0.00012 Score=76.19 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=66.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEE------cCC-----Cc---eeeccCCCCccccccccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT-----GK---ARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~------~~~-----g~---~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
..++..+|+|+|+.||-..+ ++...||... .++ .+ .++....... .+..++|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D-------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~----diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGD-------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD----DIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCC-------CceEEEEEecCcCCccccchhhhCccceEEEEEeccccc----chhhhhccCC
Confidence 37889999999999988542 2334444433 112 00 0111111111 1558899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-- 331 (958)
+..+++.+ ....++++|+ .|....+...
T Consensus 135 ~~~l~s~s-------------------------------------------------~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 135 SNFLVSGS-------------------------------------------------VDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred Cceeeeee-------------------------------------------------ccceEEEEEeccceeEeeccccc
Confidence 99998772 2234677788 7866555443
Q ss_pred ccccccccCCCCcEEEEEeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
..+..++|.|-+++|+..+.++
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred cccceeecchhhhhhhhhccCc
Confidence 6678899999999998877553
No 270
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.17 E-value=4.5e-05 Score=76.23 Aligned_cols=197 Identities=13% Similarity=0.187 Sum_probs=119.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----Cce---------------eeccCCCCccccccccce
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKA---------------RPLFQSPDIYLNAIFDNF 249 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----g~~---------------~~lt~~~~~~~~~~~~~~ 249 (958)
......+|||||..+|. +.....|-++|++- .++ |.|.++-+. +..+
T Consensus 113 ~~cR~aafs~DG~lvAT---------GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-----vn~l 178 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVAT---------GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-----VNDL 178 (430)
T ss_pred cceeeeeeCCCCcEEEc---------cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-----ccce
Confidence 35777899999998887 44467788887761 111 122222221 5677
Q ss_pred EEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC----ee
Q 002164 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG----TV 325 (958)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g----~~ 325 (958)
.|.|-..+|+..+ ....+-++|... +.
T Consensus 179 ~FHPre~ILiS~s-------------------------------------------------rD~tvKlFDfsK~saKrA 209 (430)
T KOG0640|consen 179 DFHPRETILISGS-------------------------------------------------RDNTVKLFDFSKTSAKRA 209 (430)
T ss_pred eecchhheEEecc-------------------------------------------------CCCeEEEEecccHHHHHH
Confidence 7888887777551 112244444421 22
Q ss_pred eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCccee
Q 002164 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (958)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (958)
..+... ..+.++.|.|-|.+|++...+. .+.+||+++-+.-.-.. |.. .+..++..+
T Consensus 210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V 267 (430)
T KOG0640|consen 210 FKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQV 267 (430)
T ss_pred HHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEE
Confidence 223333 6788999999999999887542 78899998654332221 211 233567889
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEEEeccccceE
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+|+.|+..+- .+..+.|-+||- ..+...+.+.. +...+-+..|+.+|++|+.+..+.. ..
T Consensus 268 ~Ys~t~~lYvT-------------aSkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~--vk 330 (430)
T KOG0640|consen 268 RYSSTGSLYVT-------------ASKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST--VK 330 (430)
T ss_pred EecCCccEEEE-------------eccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce--ee
Confidence 99999874322 244567888873 34444444422 2335667899999999987643332 45
Q ss_pred EEEEc
Q 002164 483 TWVIS 487 (958)
Q Consensus 483 l~~~~ 487 (958)
||-+.
T Consensus 331 LWEi~ 335 (430)
T KOG0640|consen 331 LWEIS 335 (430)
T ss_pred eeeec
Confidence 66554
No 271
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.16 E-value=0.00072 Score=66.73 Aligned_cols=234 Identities=11% Similarity=0.033 Sum_probs=130.1
Q ss_pred cccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCC
Q 002164 139 RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK 218 (958)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~ 218 (958)
++|..+.-++++.+++-.-.-..+...-+|-. .+| ...-...+++ +.+.....+-|.++++. +...
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-~nG--erlGty~GHt--GavW~~Did~~s~~liT---------GSAD 73 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-LNG--ERLGTYDGHT--GAVWCCDIDWDSKHLIT---------GSAD 73 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEe-cCC--ceeeeecCCC--ceEEEEEecCCcceeee---------cccc
Confidence 44555555556665543322222223334432 233 1222233332 34555555566777777 4456
Q ss_pred ceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhh
Q 002164 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (958)
Q Consensus 219 ~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~ 298 (958)
..+.+||+++|+.......+.. +..+.|+++|.++++.+...-+.
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~------------------------------ 118 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY------------------------------ 118 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc------------------------------
Confidence 7788889999987655444443 67889999999988873322111
Q ss_pred ccCchhhhHHHHhhcceEEEEEc-C------C-e-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCcee
Q 002164 299 LKDEYDEDLFDYYATTQLVLVSL-D------G-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (958)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~-~------g-~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i 368 (958)
...|.++++ . + + ...|..+ ..++..-|+|-|+.|+.... .+.|
T Consensus 119 --------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-------------~G~i 171 (327)
T KOG0643|consen 119 --------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-------------DGSI 171 (327)
T ss_pred --------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------------CCcE
Confidence 112223322 1 1 1 2333333 66788899999999987763 3489
Q ss_pred EEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc
Q 002164 369 GVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP 448 (958)
Q Consensus 369 ~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 448 (958)
.+||+.++....-... .+...+.++.+|||....+-. +......++|. ..-+.
T Consensus 172 s~~da~~g~~~v~s~~-----------~h~~~Ind~q~s~d~T~FiT~-------------s~Dttakl~D~---~tl~v 224 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDE-----------EHSSKINDLQFSRDRTYFITG-------------SKDTTAKLVDV---RTLEV 224 (327)
T ss_pred EEEEcccCceeeechh-----------hhccccccccccCCcceEEec-------------ccCccceeeec---cceee
Confidence 9999986532221110 011355788999998765441 23334456664 21122
Q ss_pred eEEEeeccccCceeeecCCceEEEEEe
Q 002164 449 EILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.+-...+..++..+++|--..++....
T Consensus 225 ~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 225 LKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEeeecccccceecccccceEEecCC
Confidence 222334556777889998777776643
No 272
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.16 E-value=0.0012 Score=74.00 Aligned_cols=237 Identities=15% Similarity=0.100 Sum_probs=135.1
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccC-C-CCC
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF-P-DGA 189 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~-~-~~~ 189 (958)
..++||++|+.|+....+ .|.+.++.+ +... +... . +..
T Consensus 23 G~~~~s~nG~~L~t~~~d----------------------------------~Vi~idv~t----~~~~-l~s~~~ed~d 63 (775)
T KOG0319|consen 23 GPVAWSSNGQHLYTACGD----------------------------------RVIIIDVAT----GSIA-LPSGSNEDED 63 (775)
T ss_pred CceeECCCCCEEEEecCc----------------------------------eEEEEEccC----Ccee-cccCCccchh
Confidence 348999999999877653 466666654 2221 2211 1 122
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC-CCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~-~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.+.....+||+++|+...+ ..-|-+|++.+|+..+.-.. .+. ++-..++.|-|..++...
T Consensus 64 ~ita~~l~~d~~~L~~a~r---------s~llrv~~L~tgk~irswKa~He~----Pvi~ma~~~~g~LlAtgg------ 124 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASR---------SQLLRVWSLPTGKLIRSWKAIHEA----PVITMAFDPTGTLLATGG------ 124 (775)
T ss_pred hhheeeecCCccEEEEeec---------cceEEEEEcccchHhHhHhhccCC----CeEEEEEcCCCceEEecc------
Confidence 6778899999998888764 44667778778865544222 121 255788999996666441
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....+-++|. .+. ...+... +.+.+..|.|+-.+
T Consensus 125 -------------------------------------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 125 -------------------------------------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred -------------------------------------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch
Confidence 1122445555 332 3344443 77888999998775
Q ss_pred -EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 -ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 -l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+++... .++.+++||+..+.. -+.... .+...+.++.+++|+..+++.
T Consensus 162 ~lL~sg~------------~D~~v~vwnl~~~~t-cl~~~~----------~H~S~vtsL~~~~d~~~~ls~-------- 210 (775)
T KOG0319|consen 162 WLLASGA------------TDGTVRVWNLNDKRT-CLHTMI----------LHKSAVTSLAFSEDSLELLSV-------- 210 (775)
T ss_pred hheeecC------------CCceEEEEEcccCch-HHHHHH----------hhhhheeeeeeccCCceEEEe--------
Confidence 333332 245899999985443 111100 111456789999999888873
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC---Cc-eEEEEEeccccceEEEEEcCCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD---SL-ALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD---g~-~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+-...+++||. .+-+..+.+. ....+.++.+-++ ++ .+.++.... ..+..++..++
T Consensus 211 -----~RDkvi~vwd~--~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~---g~~~~~d~es~ 270 (775)
T KOG0319|consen 211 -----GRDKVIIVWDL--VQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGS---GVVQYWDSESG 270 (775)
T ss_pred -----ccCcEEEEeeh--hhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCC---ceEEEEecccc
Confidence 33445788985 3333333332 2223445555555 23 133333222 33555565554
No 273
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.15 E-value=4.6e-06 Score=84.63 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=106.9
Q ss_pred EEEEEEeCCCeEEEEEEEecC-CCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 640 ELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+.++++.||-++.+.++.-. +..++. .-+||++-|. + +|...+.. ..=++.||.|+..
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGN-------A--------GFYEvG~m--~tP~~lgYsvLGw 274 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGN-------A--------GFYEVGVM--NTPAQLGYSVLGW 274 (517)
T ss_pred eEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCC-------c--------cceEeeee--cChHHhCceeecc
Confidence 567888889999987766422 111111 4678887773 1 22222211 1226779999995
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+.. |++.+.+-. +-.+....+.+++++.++.-..-++.|.++|+|.||+.++++|..+|+ ++|+|+.+.+-|...
T Consensus 275 NhP---GFagSTG~P-~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 275 NHP---GFAGSTGLP-YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred CCC---CccccCCCC-CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 554 444443321 223444555678888888633456789999999999999999999987 899999886544221
Q ss_pred CC-CCcccccchhhh-cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCC
Q 002164 799 TP-FGFQNEDRTLWE-ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (958)
Q Consensus 799 ~~-~~~~~~~~~~~~-~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (958)
.. +.+.......-+ .-..+...+-.+.+.+.+.|+++|--++|.++.
T Consensus 350 LAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 350 LALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred HHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 10 000000000000 011111222233445567899999888888764
No 274
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.14 E-value=0.00011 Score=77.29 Aligned_cols=150 Identities=17% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC-------------------CC
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-------------------RT 797 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-------------------~~ 797 (958)
..+.|+..+-..|.+.--| +++ +|+|.||||+.|+..+..+|+++..+|.+++..- ..
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~ 204 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPD 204 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCC
Confidence 3477888887777775445 355 4999999999999999999999988888775211 00
Q ss_pred CCCCCccc----cc--------------------chhhh--------------cH------------------------H
Q 002164 798 LTPFGFQN----ED--------------------RTLWE--------------AT------------------------S 815 (958)
Q Consensus 798 ~~~~~~~~----~~--------------------~~~~~--------------~~------------------------~ 815 (958)
...-.|+. .. ..++. .. +
T Consensus 205 ~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ 284 (368)
T COG2021 205 WNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTR 284 (368)
T ss_pred ccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 00000000 00 00000 00 1
Q ss_pred HHHhcCccc-------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHH
Q 002164 816 TYVEMSPFM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVL 887 (958)
Q Consensus 816 ~~~~~sp~~-------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~ 887 (958)
.+..+++.. .++++++|+|++.-+.|..+| +.+.+++.++|+..+. +..++ ..||.-. -.....+.
T Consensus 285 ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~---~~~i~S~~GHDaF-L~e~~~~~ 358 (368)
T COG2021 285 ALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA---LREIDSPYGHDAF-LVESEAVG 358 (368)
T ss_pred HHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc---eEEecCCCCchhh-hcchhhhh
Confidence 112223322 267799999999999999999 9999999999998865 43443 4588632 11223344
Q ss_pred HHHHHHHH
Q 002164 888 WETDRWLQ 895 (958)
Q Consensus 888 ~~i~~fl~ 895 (958)
..|..||.
T Consensus 359 ~~i~~fL~ 366 (368)
T COG2021 359 PLIRKFLA 366 (368)
T ss_pred HHHHHHhh
Confidence 55666664
No 275
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.14 E-value=9.4e-05 Score=79.22 Aligned_cols=200 Identities=16% Similarity=0.097 Sum_probs=111.9
Q ss_pred EEEEe-cCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002164 654 ATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (958)
Q Consensus 654 ~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~ 732 (958)
.|++. |..++++. -|+|||+|||++.......++.. ..... .+.. ..+++..||- ... +...
T Consensus 108 ~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~-~~l~-~~SILvLDYs-Lt~---~~~~ 170 (374)
T PF10340_consen 108 YWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIY-KLLP-EVSILVLDYS-LTS---SDEH 170 (374)
T ss_pred EEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHH-HHcC-CCeEEEEecc-ccc---cccC
Confidence 47777 77665544 49999999986543322222110 00111 1122 4577775652 111 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEeccCCCCCCC---CCCc
Q 002164 733 DRFVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT---PFGF 803 (958)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~---~~~~ 803 (958)
...++..+.++.++.++|.+ .+ .++|.++|-|+||.+++.++..- ...-+.+|+++|=++.... +-..
T Consensus 171 ~~~yPtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 171 GHKYPTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCcCchHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 23346667788899999994 44 36899999999999999877632 1235789999986554311 0000
Q ss_pred c--cccc--------hhhh-------cHHHHHhcCcccccCC-----------CCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 804 Q--NEDR--------TLWE-------ATSTYVEMSPFMSANK-----------LKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 804 ~--~~~~--------~~~~-------~~~~~~~~sp~~~~~~-----------~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
. +... ..|. +++......|..+... -+.-++|+.|+++-. .++..++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 0 0000 0000 0000001111111110 124799999997743 68899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCccC
Q 002164 856 NALKGHGA-----LCRLVILPFESHGY 877 (958)
Q Consensus 856 ~~l~~~g~-----~~~~~~~p~~~H~~ 877 (958)
+.+...+. ..+..+.+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986542 46777788888864
No 276
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.13 E-value=2e-05 Score=84.29 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=105.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+...+|+|||.-|+.+. +.+.|-+|.-.|.-...+...... +...+|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G---------EDG~iKiWSrsGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------- 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG---------EDGVIKIWSRSGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------- 163 (737)
T ss_pred hhhhhcccCCCCceeeeec---------CCceEEEEeccchHHHHHhhcCce-----eEEEEECCCCCceEEe-------
Confidence 4677889999999988853 355666666444322233333332 6789999999888887
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCee-eecCCCccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV-KEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~-~~l~~~~~~~~~~~SpDGk~ 345 (958)
...++++-.+ +-+. +.-..++-+...+|+|....
T Consensus 164 -------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 164 -------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred -------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 3456777777 2232 23233367789999999988
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+.... +-+.-+||-.|... ..... ++ ..+.+++|.|| +..+++
T Consensus 201 I~sgGE-------------D~kfKvWD~~G~~L---f~S~~-~e---------y~ITSva~npd-~~~~v~--------- 244 (737)
T KOG1524|consen 201 IASGGE-------------DFRFKIWDAQGANL---FTSAA-EE---------YAITSVAFNPE-KDYLLW--------- 244 (737)
T ss_pred eeecCC-------------ceeEEeecccCccc---ccCCh-hc---------cceeeeeeccc-cceeee---------
Confidence 875542 23677898876432 21111 11 34578999999 443332
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
..+.+. +. ...-+.+..++||+||.+++....
T Consensus 245 -----S~nt~R-~~------------~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 245 -----SYNTAR-FS------------SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -----eeeeee-ec------------CCCccceEEEEEcCCCceeecccc
Confidence 111221 11 112345778999999999887653
No 277
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.12 E-value=0.0002 Score=80.19 Aligned_cols=202 Identities=17% Similarity=0.098 Sum_probs=123.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....+|.|..-|+- . .+..|-+|+.++.+..+-....- +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 47888899976644333 2 25677888888776654433221 44667889998888761
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
..+.|-++++ ... ...+..+ +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 2345667777 553 2233333 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc------CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~------~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++..+.+. .+..||.. |...+.|.-.... .-.....+-.+++||||+.+++..
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~r------tLel~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTR------TLELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccce------EEeccccEEEEEEcCCCcEEEEEe--
Confidence 99887543 66667643 2222222211100 001113446789999999998841
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+..-.||.+|. + +---.|..+...+..+..|||++.|+..+-+.+ ..+|-+|....
T Consensus 528 ---------LdnTVkVyflDt--l--KFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGDC 584 (888)
T KOG0306|consen 528 ---------LDNTVKVYFLDT--L--KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGDC 584 (888)
T ss_pred ---------ccCeEEEEEecc--e--eeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccchh
Confidence 122234565551 1 122334566777888899999999887765554 78888877653
No 278
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.11 E-value=0.0026 Score=68.26 Aligned_cols=142 Identities=9% Similarity=0.139 Sum_probs=86.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.....++..|+...++.... ++.+.+|+-..-+...+... ......|.|-|
T Consensus 369 delwgla~hps~~q~~T~gq-------------dk~v~lW~~~k~~wt~~~~d---------------~~~~~~fhpsg- 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQ-------------DKHVRLWNDHKLEWTKIIED---------------PAECADFHPSG- 419 (626)
T ss_pred cceeeEEcCCChhheeeccC-------------cceEEEccCCceeEEEEecC---------------ceeEeeccCcc-
Confidence 44556778888877776653 34788898222223333332 23467799999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.++.- ...+..+++|. +.....++...+....-+.|||||..|+..+.++- .-||+++.++.
T Consensus 420 ~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~--iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 420 VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH--IYIYRVSANGR 481 (626)
T ss_pred eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe--EEEEEECCCCc
Confidence 66552 23456778875 44444455444566777899999999998875443 66777776663
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+ ............ .++.||+|++++...+
T Consensus 482 --~-y~r~~k~~gs~i-----thLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 482 --K-YSRVGKCSGSPI-----THLDWSSDSQFLVSNS 510 (626)
T ss_pred --E-EEEeeeecCcee-----EEeeecCCCceEEecc
Confidence 2 222211111111 1278999999887665
No 279
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.11 E-value=5.7e-05 Score=78.65 Aligned_cols=212 Identities=12% Similarity=0.134 Sum_probs=131.5
Q ss_pred CCCCceecCCCCEEEEEecCCC---------CCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 110 PLPALSFSPQRDKILFLKRRAL---------PPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.+....|-+||++++-.+.+.. .....|.++..++..+.+.-.......++.+..|.+|++.. ..
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k------~~ 294 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK------AY 294 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh------hh
Confidence 4667888999999887776632 33446667777777666655544333444556788888832 22
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
.....--+.....+.-+ ....+ + +--...|..||..++..++-.+..+. +.++..++||..|..
T Consensus 295 C~kt~l~~S~cnDI~~~---~~~~~-S-------gH~DkkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCS---ISDVI-S-------GHFDKKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLS 358 (459)
T ss_pred eeccccccccccceEec---ceeee-e-------cccccceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEee
Confidence 22111112244555544 12233 2 11234588889888777665554442 789999999977775
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------cc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AV 333 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~ 333 (958)
.+ ....|-++|+ +.+.+..... ..
T Consensus 359 ss-------------------------------------------------RDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 359 SS-------------------------------------------------RDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ec-------------------------------------------------CCCceeeeecccccEEEEeeccccccccc
Confidence 52 1123556666 5444433321 34
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
.+...|||||++++..+.+ +.++||++.+++...+-..+... .++..++|+|-|+.+
T Consensus 390 wtrvvfSpd~~YvaAGS~d-------------gsv~iW~v~tgKlE~~l~~s~s~----------~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSAD-------------GSVYIWSVFTGKLEKVLSLSTSN----------AAITSLSWNPSGSGL 446 (459)
T ss_pred cceeEECCCCceeeeccCC-------------CcEEEEEccCceEEEEeccCCCC----------cceEEEEEcCCCchh
Confidence 6788999999999987743 48999999977765544333221 256789999999887
Q ss_pred eE
Q 002164 414 LY 415 (958)
Q Consensus 414 ~~ 415 (958)
+-
T Consensus 447 ls 448 (459)
T KOG0288|consen 447 LS 448 (459)
T ss_pred hc
Confidence 65
No 280
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.10 E-value=0.0012 Score=68.62 Aligned_cols=226 Identities=17% Similarity=0.140 Sum_probs=125.0
Q ss_pred ccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 191 ~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
...++.+| ++.-++|.++ . ..-++++|..+|+..+....+..+. ....-+|||||++|+.+-
T Consensus 7 gH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTE------- 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTE------- 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEec-------
Confidence 45678899 5555566543 2 5578899999988775544444321 134778999999999771
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecC---CC-ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~---~~-~~~~~~~~SpDGk~ 345 (958)
++ .+ .+.+.|-++|.....+++. .. -+...+.|.|||+.
T Consensus 70 --------------nd-----------------~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t 112 (305)
T PF07433_consen 70 --------------ND-----------------YE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET 112 (305)
T ss_pred --------------cc-----------------cC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE
Confidence 11 00 0456688888843233333 22 33457889999999
Q ss_pred EEEEeec---CCcc--ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 346 ILISSIH---RPYS--FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 346 l~~~~~~---~~~~--~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
|++..-. .+.. ..........++.+.|..+++...-..++.. -....++-+++++||..++- .+
T Consensus 113 LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~V~~a---~Q 181 (305)
T PF07433_consen 113 LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGTVAFA---MQ 181 (305)
T ss_pred EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCcEEEE---Ee
Confidence 9876421 0110 0011112233555665554443221111111 01135688999999864332 11
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEE-------eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..++.. ...--|.+.+ .++..+.+. .....+.++++++||+.|+.++.+.+ .+.++|..++
T Consensus 182 ~qg~~~---~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg 249 (305)
T PF07433_consen 182 YQGDPG---DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATG 249 (305)
T ss_pred cCCCCC---ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCC
Confidence 111110 1122355554 333344442 12355678999999999999987664 3555666664
No 281
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.10 E-value=0.00038 Score=74.34 Aligned_cols=264 Identities=11% Similarity=0.101 Sum_probs=154.2
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
..+.+..|||.. -.+|.+. ...+-+++..+-..++ +..+... +.+..|-.||++++..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaG----- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAG----- 86 (487)
T ss_pred CcceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhhHHhhccc-----eeEEEeecCCeEEEcc-----
Confidence 468888999833 2344443 3344555555544444 3222332 6688888999999965
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG 343 (958)
+ ..+.+-++|. +. ..+.+... ..+....|+|++
T Consensus 87 ----------------D----------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 87 ----------------D----------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred ----------------C----------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 0 1233445554 22 23444444 566777899988
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+.++.+..+ +..+.+||+++.... .|.. +...++..+|+|-...|+++
T Consensus 123 ~t~l~s~sD------------d~v~k~~d~s~a~v~~~l~~-------------htDYVR~g~~~~~~~hivvt------ 171 (487)
T KOG0310|consen 123 NTMLVSGSD------------DKVVKYWDLSTAYVQAELSG-------------HTDYVRCGDISPANDHIVVT------ 171 (487)
T ss_pred CeEEEecCC------------CceEEEEEcCCcEEEEEecC-------------CcceeEeeccccCCCeEEEe------
Confidence 888777644 347888999987752 2222 22567888999988888874
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
.+.++.|.+||+ .......+ .++...+..+.+-|.|..|+.+. ++ .+.++|+.+| ++.......
T Consensus 172 ------GsYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn--~vkVWDl~~G-~qll~~~~~ 236 (487)
T KOG0310|consen 172 ------GSYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG---GN--SVKVWDLTTG-GQLLTSMFN 236 (487)
T ss_pred ------cCCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CC--eEEEEEecCC-ceehhhhhc
Confidence 134567888885 22222333 35566788999999999888763 32 3444455543 111111111
Q ss_pred CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~ 581 (958)
+...+.. +.+..|++.|+...-+ .++.+||+..-+...=|.-.+. +.
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD---------------------~~VKVfd~t~~Kvv~s~~~~~p-----vL- 283 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLD---------------------RHVKVFDTTNYKVVHSWKYPGP-----VL- 283 (487)
T ss_pred ccceEEE------EEeecCCceEeecccc---------------------cceEEEEccceEEEEeeecccc-----ee-
Confidence 2222222 5667788777766532 2688888655554433433322 22
Q ss_pred ecCCCccccccccCCEEEEE
Q 002164 582 LMSDQTEGDLYLNQLKILTS 601 (958)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~ 601 (958)
+.++|||+..++.=
T Consensus 284 ------siavs~dd~t~viG 297 (487)
T KOG0310|consen 284 ------SIAVSPDDQTVVIG 297 (487)
T ss_pred ------eEEecCCCceEEEe
Confidence 24678887776653
No 282
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.09 E-value=5.9e-05 Score=73.30 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=114.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+...+||.|.++|+... ...-|.+++++.-+ +..+...+. .+..+-|--..+.|+.++
T Consensus 102 ivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa----- 162 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA----- 162 (334)
T ss_pred eeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec-----
Confidence 567788999998888732 23344555554433 222322222 266777876555665431
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCCccccccccCCCCcE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDGk~ 345 (958)
....+.++|. +| +++.|.-...+.+...|+||+.
T Consensus 163 --------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 163 --------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred --------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE
Confidence 1122445566 66 4455554477899999999998
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|...- .+.|..||.+.=. .|... .++..+.+.+.+|+...++.
T Consensus 199 lTia~--------------gssV~Fwdaksf~--~lKs~-----------k~P~nV~SASL~P~k~~fVa---------- 241 (334)
T KOG0278|consen 199 LTIAY--------------GSSVKFWDAKSFG--LLKSY-----------KMPCNVESASLHPKKEFFVA---------- 241 (334)
T ss_pred EEEec--------------CceeEEecccccc--ceeec-----------cCccccccccccCCCceEEe----------
Confidence 87664 2367788876422 12111 11134567788998854333
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.++...+|.+|. .+++.... ..+.+.+-.+.|||||..-+..+++++ .+||+..+..
T Consensus 242 ---Gged~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 242 ---GGEDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred ---cCcceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 134446788885 44443333 234556677899999985555555544 8899987655
No 283
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.08 E-value=3e-05 Score=85.83 Aligned_cols=109 Identities=9% Similarity=-0.069 Sum_probs=72.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~ 745 (958)
.|++|++||.... + .+..+.......|.. ..|.|+++ |..|+|.+... ........+++.+
T Consensus 41 ~ptvIlIHG~~~s---------~---~~~~w~~~l~~al~~~~~d~nVI~V---Dw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTVT---------G---MFESWVPKLVAALYEREPSANVIVV---DWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCcC---------C---cchhhHHHHHHHHHhccCCCEEEEE---ECCCcCCCCCccccccHHHHHHHHHH
Confidence 5889999995311 0 011111222333332 36999994 44555554322 1223344567788
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+++|.++..++.+++.|+|||+||.+|..++.+.|.++..++...|.
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 888887654457789999999999999999999999999999998875
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.00032 Score=72.77 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=116.1
Q ss_pred eEEEEEc-CCeee-ecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc
Q 002164 315 QLVLVSL-DGTVK-EIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (958)
Q Consensus 315 ~l~~~~~-~g~~~-~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~ 389 (958)
.++++|. +|+.. .+..+ -.+..-.|||||++|+.+.++.. ...+-|-+||.. ...+++...+..-
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--------~g~G~IgVyd~~-~~~~ri~E~~s~G- 98 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--------TGRGVIGVYDAA-RGYRRIGEFPSHG- 98 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--------CCcEEEEEEECc-CCcEEEeEecCCC-
Confidence 4778888 77544 44433 33457899999999998876532 235689999998 3344444433221
Q ss_pred CcccccccccCcceeeeecCCCCceEEE---Eec-cCCCccccc-ccCCeEEEEeCCCCCCCCceEEE----eeccccCc
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWA---ETQ-DGGDAKVEV-TPRDIIYTQQAEPVQGEGPEILH----KLDLRYGG 460 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~---~~~-~~~~~~~~~-~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~ 460 (958)
.++..+.|.|||++|++.. ... +.+..+.+. .....|..+|. .+|....+.. .....++-
T Consensus 99 ---------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~--~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 99 ---------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA--RSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred ---------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec--CCCceeeeeecCccccccceee
Confidence 4556799999999988741 111 111111111 12334555653 3554444432 23345778
Q ss_pred eeeecCCceEEEEEeccc---cceEEEEEcCCCCCCCcEEEeccCCccccC-CCCCCceEeccCCceEEEEeeeccCCCc
Q 002164 461 ISWCDDSLALVYESWYKT---RRTRTWVISPGSKDVAPRILFDRSSEDVYS-DPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (958)
Q Consensus 461 ~~~spDg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~ 536 (958)
+++.+||..++-..+... ...-|...+.++. ...+..+.+.... ......+++++||.+++..+.
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP------- 236 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP------- 236 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-------
Confidence 999999876544433222 1122444443331 2222222111000 001112778899988887762
Q ss_pred EEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+ ..+.+||.++|+......
T Consensus 237 -----------rG--g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 237 -----------RG--GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred -----------CC--CEEEEEECCCCCEeeccc
Confidence 11 258889999988765544
No 285
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.06 E-value=0.00033 Score=75.55 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=102.4
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec-cCCCCCC------CCCC-c--------ccccchh-hhc
Q 002164 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-F--------QNEDRTL-WEA 813 (958)
Q Consensus 751 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~-~--------~~~~~~~-~~~ 813 (958)
.++..++.++.+|.|.|==|+.+..+|+.+ +|++|++.+. .+.|... ..++ . ..+.-.. .+.
T Consensus 164 ~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t 242 (367)
T PF10142_consen 164 KKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT 242 (367)
T ss_pred HhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC
Confidence 334456778999999999999999998866 6899888764 3333211 0111 0 0000000 011
Q ss_pred H---HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 814 T---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 814 ~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
+ +...-.+|+.+.++++.|-||+.|..|+... ++.+.-++..|+. ++.+..+|+++|.... ....+.+
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l 313 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSL 313 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHH
Confidence 1 2334568999999999999999999999987 8999999999876 5789999999999864 5667889
Q ss_pred HHHHHHhhccCC
Q 002164 891 DRWLQKYCVSNT 902 (958)
Q Consensus 891 ~~fl~~~l~~~~ 902 (958)
..|+.+.+.+.+
T Consensus 314 ~~f~~~~~~~~~ 325 (367)
T PF10142_consen 314 RAFYNRIQNGRP 325 (367)
T ss_pred HHHHHHHHcCCC
Confidence 999999876554
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.06 E-value=0.0017 Score=81.44 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=69.9
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC--cccccccccCcceeeeecCCCC
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~--p~~~~~~~~~~~~~~~spDG~~ 412 (958)
..++++|++..|+++... .+.|++|+..++..+.+......... ..........+..++++|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 357899977777766532 34799999877665544321100000 0000011134567999999998
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----------------------cccCceeeecCCceE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------------------~~~~~~~~spDg~~l 470 (958)
|++. + ...+.|++++. +++..+.+.... .....+++++||+ |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 7763 1 23457888885 333332221100 0123578899997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
|.++..+ .+|.+++++++
T Consensus 818 -YVADs~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 -YVADSYN--HKIKKLDPATK 835 (1057)
T ss_pred -EEEECCC--CEEEEEECCCC
Confidence 3333333 56888888764
No 287
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.06 E-value=0.00058 Score=71.77 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=116.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....++||-..++..+ ....|++|.+-......+....+.. +..+.-.|.|++|+.++
T Consensus 263 ki~~v~~~~~~~~v~~aS---------ad~~i~vws~~~~s~~~~~~~h~~~----V~~ls~h~tgeYllsAs------- 322 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITAS---------ADEIIRVWSVPLSSEPTSSRPHEEP----VTGLSLHPTGEYLLSAS------- 322 (506)
T ss_pred EEEEEEeccchhheeecC---------CcceEEeeccccccCcccccccccc----ceeeeeccCCcEEEEec-------
Confidence 788889999887776633 3567777776544433333323222 55666778888888661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE-EEc-CC-eeeecCC---CccccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL-VSL-DG-TVKEIGP---PAVYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~-~~~-~g-~~~~l~~---~~~~~~~~~SpDG 343 (958)
+++ -|. .+. +| ....+.. .-.+++.+|+|||
T Consensus 323 --------------~d~-----------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 323 --------------NDG-----------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred --------------CCc-----------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 111 111 122 33 2222222 1457889999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
-.+.... .++.+.+||+.... .++.+|+ +...+..++||.+|-+++..
T Consensus 360 Lifgtgt-------------~d~~vkiwdlks~~--~~a~Fpg----------ht~~vk~i~FsENGY~Lat~------- 407 (506)
T KOG0289|consen 360 LIFGTGT-------------PDGVVKIWDLKSQT--NVAKFPG----------HTGPVKAISFSENGYWLATA------- 407 (506)
T ss_pred eEEeccC-------------CCceEEEEEcCCcc--ccccCCC----------CCCceeEEEeccCceEEEEE-------
Confidence 5544333 23589999998544 4444443 33566899999999877763
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.+.+.|.+||+ ..-...+.+.- ....+..+.|.+.|++|+... ...++|.++-.+
T Consensus 408 ------add~~V~lwDL--RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 408 ------ADDGSVKLWDL--RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVYICKKKT 463 (506)
T ss_pred ------ecCCeEEEEEe--hhhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEEEEeccc
Confidence 23445889997 22223333322 223567789999999988762 225677776444
No 288
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.06 E-value=0.00016 Score=79.46 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..++|-|||.+++..... .++++|.+ || +....|+++.
T Consensus 13 hci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK-- 53 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK-- 53 (1081)
T ss_pred cchheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--
Confidence 357789999999999988764 78999985 45 4455676644
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
..++.++||-||++.|- +....-+.+|+.+-.-. |-...+.. +.-+.|.|=...|+.
T Consensus 54 DtVycVAys~dGkrFAS---------G~aDK~VI~W~~klEG~--LkYSH~D~----IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFAS---------GSADKSVIIWTSKLEGI--LKYSHNDA----IQCMSFNPITHQLAS 110 (1081)
T ss_pred ceEEEEEEccCCceecc---------CCCceeEEEecccccce--eeeccCCe----eeEeecCchHHHhhh
Confidence 46899999999998776 33355666666432111 21112211 445556666655553
No 289
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.05 E-value=7.1e-05 Score=78.85 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
|.++. .+.+|+|.+. .. ........++...++ ..+ . .++.++|||+||.++..++.+.|++++++|..+
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~~~---~~~-~--~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAALLD---ALG-L--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHHHH---HhC-C--CceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 88988 5556777774 00 011111333333322 222 2 349999999999999999999999999999888
Q ss_pred cC
Q 002164 792 GA 793 (958)
Q Consensus 792 ~~ 793 (958)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
No 290
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00029 Score=75.16 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=135.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|-.||+.+|- ++..+.|-++|..+....+........ +....|+|++..++....+
T Consensus 69 ~~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~ap----v~~~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQAP----VHVTKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred cceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccCc----eeEEEecccCCeEEEecCC----
Confidence 35788889899998887 566778888886553333333333322 6688899988777655111
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~ 345 (958)
+ ...++ .++ ++.++ .+... +.+...+|+|-..+
T Consensus 132 ----------------d--------------------------~v~k~--~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 132 ----------------D--------------------------KVVKY--WDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred ----------------C--------------------------ceEEE--EEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 0 11122 233 33332 34444 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+++. .+++.|.+||......+.+.-. .+ ..+.++-+-|.|..|+.
T Consensus 168 ivvtG------------sYDg~vrl~DtR~~~~~v~eln---hg---------~pVe~vl~lpsgs~ias---------- 213 (487)
T KOG0310|consen 168 IVVTG------------SYDGKVRLWDTRSLTSRVVELN---HG---------CPVESVLALPSGSLIAS---------- 213 (487)
T ss_pred EEEec------------CCCceEEEEEeccCCceeEEec---CC---------CceeeEEEcCCCCEEEE----------
Confidence 99886 3567999999985432222211 11 23467888898888776
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC-
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS- 503 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 503 (958)
.+.+.+-+||+ ..|++.... ..+.-.+..+.+..|+..|+..+-+. +.++|. ... -+.+.....
T Consensus 214 ----AgGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd--~t~----~Kvv~s~~~~ 279 (487)
T KOG0310|consen 214 ----AGGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR--HVKVFD--TTN----YKVVHSWKYP 279 (487)
T ss_pred ----cCCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc--ceEEEE--ccc----eEEEEeeecc
Confidence 34557889996 445543222 33555677788888998887664322 134443 322 123322111
Q ss_pred ccccCCCCCCceEeccCCceEEEEe
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..+-+ +..|||++.++.+.
T Consensus 280 ~pvLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 280 GPVLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred cceee------EEecCCCceEEEec
Confidence 11112 66899999988876
No 291
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.04 E-value=0.0024 Score=67.16 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=136.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCC-ceEEEEEcCCCceeeccCCCCc-
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK-LRVWVADVDTGKARPLFQSPDI- 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~-~~l~~~~~~~g~~~~lt~~~~~- 240 (958)
+.++++|... ++ .+ +.-..+....+..||||+.++.....-.+..+... .-|-++|.++-.+..=...+..
T Consensus 17 ~rv~viD~d~----~k--~l-Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GK--LL-GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TE--EE-EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----Cc--EE-EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3678887532 22 22 11122345667889999999876543322222223 3456788877433221111211
Q ss_pred ccc--ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 241 YLN--AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 241 ~~~--~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
+.. .....++.|+||+++++.- .. -...+-+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N---------------------~T--------------------------Pa~SVtV 122 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQN---------------------FT--------------------------PATSVTV 122 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEE---------------------ES--------------------------SSEEEEE
T ss_pred hheecccccceEEccCCcEEEEEc---------------------cC--------------------------CCCeEEE
Confidence 100 1134788999999999761 00 1234778
Q ss_pred EEc-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCcccc
Q 002164 319 VSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 319 ~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~ 394 (958)
+|+ .++.. .+..++-..-+-+.++ + + .+.- .++.+..+.++ |+..+..+..-..+..|.
T Consensus 123 VDl~~~kvv~ei~~PGC~~iyP~~~~-~-F--~~lC-----------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~-- 185 (342)
T PF06433_consen 123 VDLAAKKVVGEIDTPGCWLIYPSGNR-G-F--SMLC-----------GDGSLLTVTLDADGKEAQKSTKVFDPDDDPL-- 185 (342)
T ss_dssp EETTTTEEEEEEEGTSEEEEEEEETT-E-E--EEEE-----------TTSCEEEEEETSTSSEEEEEEEESSTTTS-B--
T ss_pred EECCCCceeeeecCCCEEEEEecCCC-c-e--EEEe-----------cCCceEEEEECCCCCEeEeeccccCCCCccc--
Confidence 888 55433 2222211111111122 1 1 1111 12345455554 444433222111111111
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee----------cccc---Cce
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLRY---GGI 461 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~~---~~~ 461 (958)
.....++.++.+++|. +..+.||.+++ .+...+....- .|+. .-+
T Consensus 186 ------f~~~~~~~~~~~~~F~-------------Sy~G~v~~~dl---sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 186 ------FEHPAYSRDGGRLYFV-------------SYEGNVYSADL---SGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp -------S--EEETTTTEEEEE-------------BTTSEEEEEEE---TTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred ------ccccceECCCCeEEEE-------------ecCCEEEEEec---cCCcccccCcccccCccccccCcCCcceeee
Confidence 1234566666666664 56778999885 55554443211 1222 225
Q ss_pred eeecCCceEEEEEec------cccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 462 SWCDDSLALVYESWY------KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 462 ~~spDg~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
++.+..++|+..-.. +....+||++|++++ +.....+.. ..+.+ ++.|.|.+=++|....
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~-~~~~S------i~Vsqd~~P~L~~~~~----- 309 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLE-HPIDS------IAVSQDDKPLLYALSA----- 309 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--EEEEEEEEE-EEESE------EEEESSSS-EEEEEET-----
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--eEEEEEeCC-Cccce------EEEccCCCcEEEEEcC-----
Confidence 677766666654321 113478999999985 222222211 11112 6678888877776521
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
....|+++|..+|+..+-...-
T Consensus 310 --------------~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 310 --------------GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp --------------TTTEEEEEETTT--EEEEE---
T ss_pred --------------CCCeEEEEeCcCCcEEeehhcc
Confidence 1125999999999887665533
No 292
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.03 E-value=0.00062 Score=71.58 Aligned_cols=241 Identities=10% Similarity=0.075 Sum_probs=142.2
Q ss_pred CCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEee
Q 002164 130 ALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRI 209 (958)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~ 209 (958)
+...+..+.++..++..+.+.+........+.+..|+||.+.. .....+. .++...+....-.|.|++++..++
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~----~s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~- 323 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL----SSEPTSS-RPHEEPVTGLSLHPTGEYLLSASN- 323 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc----ccCcccc-ccccccceeeeeccCCcEEEEecC-
Confidence 4455667888888888888887776655555567899998754 2222221 223346777788888888887653
Q ss_pred ccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcc
Q 002164 210 DAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289 (958)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (958)
....-..+..+|............ -.+.+.++.|||-++...+
T Consensus 324 --------d~~w~Fsd~~~g~~lt~vs~~~s~--v~~ts~~fHpDgLifgtgt--------------------------- 366 (506)
T KOG0289|consen 324 --------DGTWAFSDISSGSQLTVVSDETSD--VEYTSAAFHPDGLIFGTGT--------------------------- 366 (506)
T ss_pred --------CceEEEEEccCCcEEEEEeecccc--ceeEEeeEcCCceEEeccC---------------------------
Confidence 222223344444332221111110 0145888999996665331
Q ss_pred cccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCc
Q 002164 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPR 366 (958)
Q Consensus 290 ~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~ 366 (958)
..++|-++|+ .+ ...++..+ +.+..+.||-+|-||+...++ +
T Consensus 367 ----------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add-------------~ 411 (506)
T KOG0289|consen 367 ----------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD-------------G 411 (506)
T ss_pred ----------------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC-------------C
Confidence 2345667777 55 34444444 788999999999999999855 2
Q ss_pred eeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 367 QVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 367 ~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
.+.+||+..- ..+.+. ..+. .++.++.|.+-|+.++.. +..-+||.++- ..
T Consensus 412 ~V~lwDLRKl~n~kt~~---l~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~ 463 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQ---LDEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KT 463 (506)
T ss_pred eEEEEEehhhcccceee---cccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---cc
Confidence 5999999742 222222 2211 234678899999988773 23335666652 33
Q ss_pred CCceEE---EeeccccCceeeecCCceEEEEEec
Q 002164 446 EGPEIL---HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 446 ~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
+..+.+ ....+....+.|...-++++..+..
T Consensus 464 k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 464 KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred ccceeeehhhhcccccceeeecccceEEeeccch
Confidence 333333 2333344556777776666655443
No 293
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.03 E-value=0.00016 Score=67.56 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
.+|..+.++.-... . ++.+.+++||.|+.+++.++.+....++++++++|+---... ..+.....
T Consensus 43 ~~dWi~~l~~~v~a--~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~------------~~~~~~~t 107 (181)
T COG3545 43 LDDWIARLEKEVNA--A-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE------------IRPKHLMT 107 (181)
T ss_pred HHHHHHHHHHHHhc--c-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc------------cchhhccc
Confidence 44444544443332 2 345999999999999999998876689999999986311000 00111112
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (958)
++|. ...++.-|.+++++.+|++|+ ++++..+.+++.. .++....+||... +.....+.+..+.+|+.+
T Consensus 108 f~~~-p~~~lpfps~vvaSrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 108 FDPI-PREPLPFPSVVVASRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCC-ccccCCCceeEEEecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 2222 123345699999999999999 9999999888765 6777888899752 233444555555555543
No 294
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.02 E-value=6.3e-05 Score=82.03 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=122.5
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~- 241 (958)
.|-|++++.-|.+-. ..+.++-.+..+....|.| |..+||... +++..+||.+...|+.....|....-.
T Consensus 604 ~iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 604 VIAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred eEEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeeec
Confidence 466777755443321 1222333455888899999 888999865 566888999887776543332211100
Q ss_pred ccccccceEEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 242 LNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 242 ~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
....+.++.|.|=- ..|+.+ . ....|-++|
T Consensus 676 h~eKI~slRfHPLAadvLa~a----------------------------------------s---------yd~Ti~lWD 706 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVA----------------------------------------S---------YDSTIELWD 706 (1012)
T ss_pred ccceEEEEEecchhhhHhhhh----------------------------------------h---------ccceeeeee
Confidence 00014455555421 222221 0 224466667
Q ss_pred c-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 321 L-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 321 ~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
+ +++ .-.+..+ +.+..++|||||++++.+-.+ +++++|....++. ++...++ |.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~e~-pv~Eg~g----pv----- 763 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSREQ-PVYEGKG----PV----- 763 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCCCC-ccccCCC----Cc-----
Confidence 7 653 3355555 888999999999999988743 4888988764432 2222211 11
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEE
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
....-.+.|.=||+.+++. | ++.....+|-+|++..++++..... .+..-..--+.+.+|...|+.+.
T Consensus 764 gtRgARi~wacdgr~viv~-----G----fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVV-----G----FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEe-----c----ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 0122358899999988875 1 1112233566676544444332221 11122223467788877665553
No 295
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00044 Score=67.31 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=127.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
..|.|..+...+.......|++ +.+.+..+.|.. -|..||-++ ...+|.+|.-++|.-.++.....
T Consensus 33 ~tVkIf~v~~n~~s~ll~~L~G--h~GPVwqv~wahPk~G~iLAScs---------YDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 33 GTVKIFEVRNNGQSKLLAELTG--HSGPVWKVAWAHPKFGTILASCS---------YDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred ccEEEEEEcCCCCceeeeEecC--CCCCeeEEeecccccCcEeeEee---------cCceEEEEecCCCchhhhhhhhh-
Confidence 4677777765442223344555 335677888876 788888765 36678888877776555543222
Q ss_pred cccccccceEEecCC--eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 241 YLNAIFDNFVWVNNS--TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 241 ~~~~~~~~~~wspDG--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
..+.+.+++|.|.+ -.|++.+.+ +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~LacasSD-----------------------------------------------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACASSD-----------------------------------------------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEeeCC-----------------------------------------------CcEEEEE
Confidence 12236788999875 455555211 1222444
Q ss_pred EEcC-C-eeeecCC-C-ccccccccCCC---CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 319 VSLD-G-TVKEIGP-P-AVYTSLDPSPD---EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 319 ~~~~-g-~~~~l~~-~-~~~~~~~~SpD---Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
++.+ | ....+.. . -++++++|.|- |..+- .......+..--+..++.+-+|+.+.+..+.-.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~--~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--------- 201 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD--QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER--------- 201 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccc--cCcccccceeeccCCccceeeeecCCcchhhhh---------
Confidence 4443 3 2223322 2 66788899886 52110 000000000001123447778877753211100
Q ss_pred ccccccccCcceeeeecCCCCc-eEEEEeccCCCcccccccCCeEEEEeCCCCCCC--CceEEEeeccccCceeeecCCc
Q 002164 392 IAFNSVRKGMRSINWRSDKPST-LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSL 468 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~ 468 (958)
.+.++...+|.++|.|.-..- -+++ ..++.+.+++|..+ .+++ +.+.|...+..+..++||.-|.
T Consensus 202 -~l~~H~dwVRDVAwaP~~gl~~s~iA----------S~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 202 -TLEGHKDWVRDVAWAPSVGLPKSTIA----------SCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGN 269 (299)
T ss_pred -hhhhcchhhhhhhhccccCCCceeeE----------EecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecccc
Confidence 122333667889999964221 1211 12445556555531 1222 2233444444567789999999
Q ss_pred eEEEEEeccccceEEEEEcCCC
Q 002164 469 ALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|+.+...+ ...||.=+.++
T Consensus 270 ~LaVs~GdN--kvtlwke~~~G 289 (299)
T KOG1332|consen 270 ILAVSGGDN--KVTLWKENVDG 289 (299)
T ss_pred EEEEecCCc--EEEEEEeCCCC
Confidence 998875333 26677666554
No 296
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.01 E-value=0.00025 Score=71.09 Aligned_cols=247 Identities=13% Similarity=0.094 Sum_probs=129.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.+.+|++..+|.... +.... ..+.+....||-||..++.. .-..++-+||+.+|+.+++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~g---------~~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFSG---------GCDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEee---------ccCCceEEEEccCCCeeeeeecccc--
Confidence 5789999977664433 22222 23578889999999766552 2356788899999999888665554
Q ss_pred cccccceEEecCCe--EEEEEecCCCCCC-CCCCCCCCC-----CceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 243 NAIFDNFVWVNNST--LLVCTIPLLRGDP-PKKPLVPLG-----PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 243 ~~~~~~~~wspDG~--~l~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
+..+.|-+... .|+..+-++.-.. ..+...|.. .+++..+ . .+ +.........
T Consensus 116 ---vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D------------v-~~---pm~vVata~r 176 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD------------V-LY---PMAVVATAER 176 (347)
T ss_pred ---eeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh------------c-cC---ceeEEEecCC
Confidence 77899986654 4554433322110 000000000 0111110 0 00 0000001345
Q ss_pred eEEEEEc-CC--eeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEecc--CCc
Q 002164 315 QLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCD--LPL 386 (958)
Q Consensus 315 ~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~--~~~ 386 (958)
+|.+|+| ++ +.+++..+ ..++.++.-+|.+..+..+.. +.+.+..++.. .....+. +..
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-------------Grv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-------------GRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-------------ceEEEEecCCCCccCceeEEEecc
Confidence 6888888 55 33344433 456677777777766666532 35555555421 1111100 000
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceee
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISW 463 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~ 463 (958)
.. + .+..-..+.+++|.|.-..++- ++.++..-.||. + ...+| ...+..+.--.|
T Consensus 244 ~~--~--~~~~VYaVNsi~FhP~hgtlvT-------------aGsDGtf~FWDk---d--ar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 244 TN--S--VNDDVYAVNSIAFHPVHGTLVT-------------AGSDGTFSFWDK---D--ARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred CC--C--CCCceEEecceEeecccceEEE-------------ecCCceEEEecc---h--hhhhhhccCcCCCccceeEe
Confidence 00 0 0000123467888886554443 245556667773 2 12222 233455566789
Q ss_pred ecCCceEEEEEecc
Q 002164 464 CDDSLALVYESWYK 477 (958)
Q Consensus 464 spDg~~l~~~~~~~ 477 (958)
+.+|..++|+..++
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999999987443
No 297
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.01 E-value=5.9e-05 Score=73.08 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--------CceeEEEEeccCCCCCCCCCCcccccchhhhc
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP--------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p--------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (958)
-+....+|+++++.-| +|+|.|.|+.|+..+++... ..|+-+|.++|+.-...
T Consensus 91 sl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 91 SLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc---------------
Confidence 3566677888888776 79999999999999988211 23788888888643110
Q ss_pred HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 814 ~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
. + .-..+...+++|.|-+.|+.|.++| ...+..|++..+.. ..+.-| +||.+-. .....+.|.+|
T Consensus 152 ~--~---~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hp-ggH~VP~---~~~~~~~i~~f 216 (230)
T KOG2551|consen 152 K--L---DESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHP-GGHIVPN---KAKYKEKIADF 216 (230)
T ss_pred h--h---hhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecC-CCccCCC---chHHHHHHHHH
Confidence 0 0 0111234578999999999999998 88899999998875 444445 4998743 34667889999
Q ss_pred HHHhhcc
Q 002164 894 LQKYCVS 900 (958)
Q Consensus 894 l~~~l~~ 900 (958)
|...+..
T Consensus 217 i~~~~~~ 223 (230)
T KOG2551|consen 217 IQSFLQE 223 (230)
T ss_pred HHHHHHh
Confidence 9988753
No 298
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.99 E-value=0.00023 Score=73.11 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+.+|+... .....+.+.+ ..-.++.+.+-|-|.+|+-..+ ...|..|+.++|........+...
T Consensus 173 ~~~LWd~~~--~~~c~ks~~g--h~h~vS~V~f~P~gd~ilS~sr---------D~tik~We~~tg~cv~t~~~h~ew-- 237 (406)
T KOG0295|consen 173 SAKLWDFDT--FFRCIKSLIG--HEHGVSSVFFLPLGDHILSCSR---------DNTIKAWECDTGYCVKTFPGHSEW-- 237 (406)
T ss_pred chhheeHHH--HHHHHHHhcC--cccceeeEEEEecCCeeeeccc---------ccceeEEecccceeEEeccCchHh--
Confidence 367787732 1112223322 2237899999999999998764 567899999999877665555443
Q ss_pred ccccceEEecCCeEEEEE
Q 002164 244 AIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~ 261 (958)
+..++-.-||.+|+..
T Consensus 238 --vr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 238 --VRMVRVNQDGTIIASC 253 (406)
T ss_pred --EEEEEecCCeeEEEec
Confidence 6788888999988866
No 299
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.95 E-value=0.00077 Score=71.53 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=42.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+...+.||||++||+ +.....|.+|+.++.+.++.+...... +.+++|-..-..++..
T Consensus 204 eil~~avS~Dgkylat---------gg~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLAT---------GGRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEe---------cCCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 5677889999999999 445678889999999988875544432 6677776544555544
No 300
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.95 E-value=2.3e-05 Score=64.73 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=56.4
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~ 728 (958)
|.+|.+..|.|++ . +..+|+++||.. .+...+...+..|+++||.|++ .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999975 1 478999999942 2334455678889999999999 77789998
Q ss_pred cccch---hhHHHHHHHHHHHH
Q 002164 729 EEAND---RFVEQLVACAEAAV 747 (958)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~av 747 (958)
+.+.. ..+...++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 87532 34567788877665
No 301
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.94 E-value=6.4e-05 Score=76.36 Aligned_cols=92 Identities=24% Similarity=0.190 Sum_probs=57.6
Q ss_pred EEEEEeChHHHHHHHHHHhC--------CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCC
Q 002164 761 IAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (958)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (958)
.+|+|+|.||.+|..++... ...|+.+|+++|..-.... +.......++++|
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------------------~~~~~~~~~i~iP 163 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------------------YQELYDEPKISIP 163 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE---------------------GTTTT--TT---E
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh--------------------hhhhhccccCCCC
Confidence 58999999999999888632 2358999999886321000 0111123457899
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+|-++|.+|..++ ++.++++++.+... .+++..++ ||.+-
T Consensus 164 tlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 164 TLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp EEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred eEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 9999999999998 88999999998874 57777776 89873
No 302
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00024 Score=69.54 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=140.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|+|.++.. + +..+.+..+........++||+.-..++++.. ++|. |-++|+ +....++....+ .
T Consensus 38 G~L~ile~~~-~--~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGS--Lrl~d~-~~~s~Pi~~~kE--H 103 (311)
T KOG0277|consen 38 GRLFILEVTD-P--KGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDGS--LRLFDL-TMPSKPIHKFKE--H 103 (311)
T ss_pred ceEEEEecCC-C--CCeEEEEeeecccceeEeeecCCCcceEEEEe------cCce--EEEecc-CCCCcchhHHHh--h
Confidence 5789988842 1 22222222222236888999999998888764 4444 445552 222223321111 0
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
...+.++.|.+-.+.++.++. +.++-.||..+..
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsS----------------------------------------------WD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSS----------------------------------------------WDGTIKLWDPNRP 137 (311)
T ss_pred hhheEEeccccccceeEEeec----------------------------------------------cCCceEeecCCCC
Confidence 112668889976555554410 0123345554443
Q ss_pred CeeeecCCC-ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCccccccccc
Q 002164 323 GTVKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
..++..... .-+....||| ++..++..+. ++.+.+||++. ++...|..+. .
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-------------d~~l~lwdvr~~gk~~~i~ah~-------------~ 191 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASG-------------DGTLRLWDVRSPGKFMSIEAHN-------------S 191 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccC-------------CceEEEEEecCCCceeEEEecc-------------c
Confidence 334444444 6678889999 5556665553 34788999872 2222222221 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+-...|+.=...++++ .+.++.|+.||+..+. ...-.|..+...++.+.|||--..|+.+..++-.
T Consensus 192 Eil~cdw~ky~~~vl~T------------g~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLAT------------GGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred eeEeecccccCCcEEEe------------cCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 22345677766677664 1345678899862222 1223445667788999999998888877776643
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEecc-CCceEEEE
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAK 527 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~ 527 (958)
.+||...... ..+...+...+.+.+ +.||+ ++.+++..
T Consensus 259 -~riw~~~~~d---s~~e~~~~HtEFv~g------~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 259 -VRIWDPERQD---SAIETVDHHTEFVCG------LDWSLFDPGQVAST 297 (311)
T ss_pred -EEecccccch---hhhhhhhccceEEec------cccccccCceeeec
Confidence 5566544222 223344555555555 34555 34445443
No 303
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.93 E-value=0.00023 Score=71.32 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=151.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCch---------------------------hcccccceeeceeecCCCCCccceeeE
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLE---------------------------ELARPEEKLAGLRIDGKCNTRSRMSFY 162 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (958)
+....+|||||..+|..+.++-..+. .|-.+-..+.-+.+-|.+......+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 35678899999999987766221111 111111222334444444444334444
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..+.+.|.+- . ...+..+-+.+...+...+|.|-|+.|+... ....+.++|+++-+.-.- ..+....
T Consensus 194 ~tvKlFDfsK-~--saKrA~K~~qd~~~vrsiSfHPsGefllvgT---------dHp~~rlYdv~T~Qcfvs-anPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSK-T--SAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---------DHPTLRLYDVNTYQCFVS-ANPDDQH 260 (430)
T ss_pred CeEEEEeccc-H--HHHHHHHHhhccceeeeEeecCCCceEEEec---------CCCceeEEeccceeEeee-cCccccc
Confidence 5677777632 1 1223333344445788999999999999844 466788888887655322 2244444
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
.+.+..+.+|+.|++-+..+ ..+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS-------------------------------------------------kDG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS-------------------------------------------------KDGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec-------------------------------------------------cCCcEEeeccc
Confidence 45577889999997555441 1122444443
Q ss_pred CC-eeeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 322 DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 ~g-~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
.+ -++.+... ..+.+..|+.|||+|+.+..+ ..+.+|.+.++..-......+....-
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-------------S~vkLWEi~t~R~l~~YtGAg~tgrq------ 352 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-------------STVKLWEISTGRMLKEYTGAGTTGRQ------ 352 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-------------ceeeeeeecCCceEEEEecCCcccch------
Confidence 33 22233221 567788999999999877633 47889999866543333322111100
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEec
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
.-.....|.....+++|-- ...+.+..||. .++.....+ ..+++.++.+.-||.+-.++..+.
T Consensus 353 -~~rtqAvFNhtEdyVl~pD------------Eas~slcsWda--Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd- 416 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPD------------EASNSLCSWDA--RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD- 416 (430)
T ss_pred -hhhhhhhhcCccceEEccc------------cccCceeeccc--cchhhhhhcccCCCCCceEEEeCCCCCceeeecc-
Confidence 0112233444333433310 11335677775 333333333 345666777788888765544332
Q ss_pred cccceEEEEE
Q 002164 477 KTRRTRTWVI 486 (958)
Q Consensus 477 ~~~~~~l~~~ 486 (958)
..+.+.|.-
T Consensus 417 -D~raRFWyr 425 (430)
T KOG0640|consen 417 -DFRARFWYR 425 (430)
T ss_pred -cceeeeeee
Confidence 233556643
No 304
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00036 Score=67.45 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=110.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|.-||++.+....+ ..+.+|+... | .-.+...+ +|.
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g--~liktYsg--hG~ 60 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-G--ALIKTYSG--HGH 60 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-c--ceeeeecC--CCc
Confidence 46678899999998877665 4788998643 2 12333333 445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....-|-|..+++- ..+...+++||+++|+..+-....... +..++|..+...++..+-+...
T Consensus 61 EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~SgsfD~s~-- 125 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASGSFDSSV-- 125 (307)
T ss_pred eeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEecccccee--
Confidence 7888888889988877 446789999999999876655444443 6788888888777755322111
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccC----c-hhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKD----E-YDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~----~-~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG 343 (958)
+.|+-+......+....+.... . .+..+..-...+.+-.+++ .|....-.-+..++.+.||+||
T Consensus 126 ----------r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 126 ----------RLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDG 195 (307)
T ss_pred ----------EEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCC
Confidence 1111111111000000000000 0 0000000002234555565 5543322222567899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
+..+..+.+ +.+.+.|.++++.
T Consensus 196 nc~La~~l~-------------stlrLlDk~tGkl 217 (307)
T KOG0316|consen 196 NCSLASSLD-------------STLRLLDKETGKL 217 (307)
T ss_pred CEEEEeecc-------------ceeeecccchhHH
Confidence 999888743 4788888876653
No 305
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.93 E-value=0.00046 Score=71.67 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=82.1
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCC-CcCcHHHHHHH-HCCcEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~v 715 (958)
..+++++.. |+..+.+..+.-+.+.+ ---||+.-|... .+.. ... .........++ +.|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 457788887 99999888876333322 335777666321 1110 000 00112233444 478999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
+. +.++|.|.+.+..+ ..+++.|..++++||+++. .+.+++|.+.|||.||.++..++.+.
T Consensus 175 l~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LV---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EE---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99 55567777776655 4899999999999999854 36889999999999999988766554
No 306
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.91 E-value=0.0041 Score=78.17 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=70.9
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCc-c-ccC-cc------cccccccCccee
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-A-EDI-PI------AFNSVRKGMRSI 404 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~-~-~~~-p~------~~~~~~~~~~~~ 404 (958)
...++++|||++|+++... .+.|.+||++++..+.+..... . ... .. ........+..+
T Consensus 742 P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 3457899999998877633 3489999998655443321100 0 000 00 000111245678
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--------------cccCceeeecCCceE
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LRYGGISWCDDSLAL 470 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--------------~~~~~~~~spDg~~l 470 (958)
.+++||. +++ ++ ...+.|.+++. +++....+.... .....+++++||+ |
T Consensus 810 avd~dG~-LYV-AD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l 872 (1057)
T PLN02919 810 LCAKDGQ-IYV-AD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L 872 (1057)
T ss_pred eEeCCCc-EEE-EE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence 9999997 333 22 33557888884 555544442211 1234579999997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+ .++..+ ..|.++++.++
T Consensus 873 y-VaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 873 F-VADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred E-EEECCC--CEEEEEECCCC
Confidence 3 334333 56888888775
No 307
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.90 E-value=0.0019 Score=69.93 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=41.3
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+......+..++|||||++|+..+.++- .+|+.+ ++. +..-+...-.+ +-..++||||||+|+....
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGf--LRvF~f--dt~--eLlg~mkSYFG------GLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGF--LRIFDF--DTQ--ELLGVMKSYFG------GLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCce--EEEeec--cHH--HHHHHHHhhcc------ceEEEEEcCCccEEEecCC
Confidence 3344456788999999999999876553 445444 431 11222211111 1223789999999998764
No 308
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.87 E-value=0.00077 Score=73.97 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=54.1
Q ss_pred cCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHh
Q 002164 826 ANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 826 ~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+++|+ +|+|.+-|+.|.++| +.++..+.+.+...+ ..++....+++||. +.+...+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 35688 999999999999999 999988888764433 24556677788996 455666677888899998763
No 309
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.86 E-value=0.00057 Score=69.24 Aligned_cols=106 Identities=10% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..-+|++|+..+|...+. .++.|+.....+-....+.+.. +..
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~~~~w~~~htls~--Hd~ 56 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLGADLWEPAHTLSE--HDK 56 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecCCCCceeceehhh--hCc
Confidence 56778999999999988764 3667776633110122333432 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc-CCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~-~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+..+-|+|.+.+|..+.. ..+-|++.. ++|+-.+..-. -++|.....+.|+|.+..|++.
T Consensus 57 ~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~WkptlvL--lRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLVL--LRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred ceeEEeecCCCCceeEccC---------CCCccccccCCCCeeccceeE--EEeccceeeEeecCcCceEEec
Confidence 7788999999999999763 334455555 55543322111 1223336689999999988876
No 310
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.85 E-value=0.00016 Score=77.83 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=59.5
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+..++|||||++||.++.+ +-+.|++.++.++.-+.. +.-++.--+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqD-------------GfLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQD-------------GFLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecC-------------ceEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 577899999999999999854 378888877544322211 0113345589999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceeeec
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCD 465 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~sp 465 (958)
+|+.- ++++-|-+|.. . +.+.+ ..+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 98872 45555667775 2 12222 34455677788876
No 311
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0052 Score=65.46 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=89.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|.|.|+.+.|+|+- -....|+.++.++|+.+.... +.. +.....-.++..|+..
T Consensus 27 gEgP~w~~~~~~L~w~D--------I~~~~i~r~~~~~g~~~~~~~-p~~-----~~~~~~~d~~g~Lv~~--------- 83 (307)
T COG3386 27 GEGPVWDPDRGALLWVD--------ILGGRIHRLDPETGKKRVFPS-PGG-----FSSGALIDAGGRLIAC--------- 83 (307)
T ss_pred ccCccCcCCCCEEEEEe--------CCCCeEEEecCCcCceEEEEC-CCC-----cccceeecCCCeEEEE---------
Confidence 45689999999998864 246799999998776654433 322 3344444444444433
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC------ccccccccCCC
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP------AVYTSLDPSPD 342 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~------~~~~~~~~SpD 342 (958)
...+++++. +|.. +.+... .........||
T Consensus 84 ------------------------------------------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 84 ------------------------------------------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred ------------------------------------------ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 011344443 3333 333322 22346677889
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|+..+-+. .. ........+..+.+|.++..+...+.+...- ....+++|||||+.+++. +
T Consensus 122 G~~wfgt~-~~-~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~~~NGla~SpDg~tly~a-D---- 181 (307)
T COG3386 122 GRIWFGDM-GY-FDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-------------TIPNGLAFSPDGKTLYVA-D---- 181 (307)
T ss_pred CCEEEeCC-Cc-cccCccccCCcceEEEEcCCCCEEEeecCcE-------------EecCceEECCCCCEEEEE-e----
Confidence 87544333 31 0000011123347888887666666655411 123579999999988773 2
Q ss_pred CCcccccccCCeEEEEeCC
Q 002164 423 GDAKVEVTPRDIIYTQQAE 441 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~ 441 (958)
+....|+.++.+
T Consensus 182 -------T~~~~i~r~~~d 193 (307)
T COG3386 182 -------TPANRIHRYDLD 193 (307)
T ss_pred -------CCCCeEEEEecC
Confidence 335678888763
No 312
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.83 E-value=0.00018 Score=77.33 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=52.7
Q ss_pred eEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccCCCC
Q 002164 161 FYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPD 239 (958)
Q Consensus 161 ~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~~~~ 239 (958)
.++-|.+|.-+ |-+ ...+. ..+..+..++|.||+..|+|+. ..++++-+++- .++.+.-.+.+
T Consensus 124 EDG~iKiWSrs--GML--RStl~--Q~~~~v~c~~W~p~S~~vl~c~----------g~h~~IKpL~~n~k~i~WkAHDG 187 (737)
T KOG1524|consen 124 EDGVIKIWSRS--GML--RSTVV--QNEESIRCARWAPNSNSIVFCQ----------GGHISIKPLAANSKIIRWRAHDG 187 (737)
T ss_pred CCceEEEEecc--chH--HHHHh--hcCceeEEEEECCCCCceEEec----------CCeEEEeecccccceeEEeccCc
Confidence 33678888752 311 12222 1334789999999999999986 56888888764 23444433333
Q ss_pred ccccccccceEEecCCeEEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~ 261 (958)
- +-.+.|++...+|+..
T Consensus 188 i-----iL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 188 L-----VLSLSWSTQSNIIASG 204 (737)
T ss_pred E-----EEEeecCccccceeec
Confidence 2 5588899998888854
No 313
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.001 Score=74.02 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=101.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+...++||||++||+..-. +..|+.+..++ .-+.+.+...+...
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----------------------------------~~~iy~L~~~~-~vk~~~v~~~~~~~ 428 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----------------------------------RTKIYRLQPDP-NVKVINVDDVPLAL 428 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----------------------------------ceEEEEeccCc-ceeEEEeccchhhh
Confidence 46678899999999998742 33444454433 11222222222111
Q ss_pred -cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 -~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
......|+-|+..++++.. ....|...++++...+.+.......-...+..++-||||++|+...
T Consensus 429 ~~a~~i~ftid~~k~~~~s~--------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~------ 494 (691)
T KOG2048|consen 429 LDASAISFTIDKNKLFLVSK--------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS------ 494 (691)
T ss_pred ccceeeEEEecCceEEEEec--------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe------
Confidence 4567788999998888761 2557777777775544433221111112267888999999999871
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCC-CCc
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSP-DEK 344 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~Sp-DGk 344 (958)
..++|+++++ +++.+.+... ..++...++| +-+
T Consensus 495 -------------------------------------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 495 -------------------------------------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred -------------------------------------------ccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 3467999999 7777666533 5667788886 444
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCce
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~ 377 (958)
.|++... .++++-+|++...
T Consensus 532 ~lvvats-------------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATS-------------NNQVFEFDIEARN 551 (691)
T ss_pred cEEEEec-------------CCeEEEEecchhh
Confidence 6665543 3488888885433
No 314
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.81 E-value=0.0022 Score=66.95 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=87.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....|++||||+.+||+.. .++...||+....+. ...+..... +..+.|+++|...++.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~~-~~~--- 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVDD-GSG--- 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEEc-CCC---
Confidence 6889999999999999872 446789999986554 444332222 67899999976555441 000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--eeeecCCC--c-cccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP--A-VYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--~~~~l~~~--~-~~~~~~~SpDG 343 (958)
...+ ..+. +| ....+... . .+..+.+||||
T Consensus 88 -------------------------------------------~~~~-~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 88 -------------------------------------------GVRV-VRDSASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred -------------------------------------------ceEE-EEecCCCcceeEEecccccCCceEEEEECCCC
Confidence 0111 1122 33 23333322 2 68899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEecc---CceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~---~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.++++...... .+++++-.+. .+..+.+.... .-. ......+..+.|++|++.++.
T Consensus 124 ~RvA~v~~~~~----------~~~v~va~V~r~~~g~~~~l~~~~-~~~-----~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 124 TRVAVVVEDGG----------GGRVYVAGVVRDGDGVPRRLTGPR-RVA-----PPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred cEEEEEEecCC----------CCeEEEEEEEeCCCCCcceeccce-Eec-----ccccCcceeeeecCCCEEEEE
Confidence 99999985432 2467766544 22122322210 000 001134568999999975555
No 315
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.80 E-value=0.00048 Score=67.15 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=105.9
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
-|.|++++.. ..++..+.+++ +.+..+.|--..+.|+-.. ....|.+||..+|...+-...+..
T Consensus 123 llrvfdln~p--~App~E~~ght--g~Ir~v~wc~eD~~iLSSa---------dd~tVRLWD~rTgt~v~sL~~~s~--- 186 (334)
T KOG0278|consen 123 LLRVFDLNRP--KAPPKEISGHT--GGIRTVLWCHEDKCILSSA---------DDKTVRLWDHRTGTEVQSLEFNSP--- 186 (334)
T ss_pred HhhhhhccCC--CCCchhhcCCC--CcceeEEEeccCceEEeec---------cCCceEEEEeccCcEEEEEecCCC---
Confidence 3556666331 14556666655 4588888987777777643 256788888888877665444433
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
+.++..++||++|.++ ..+.+--++.
T Consensus 187 --VtSlEvs~dG~ilTia--------------------------------------------------~gssV~Fwdaks 214 (334)
T KOG0278|consen 187 --VTSLEVSQDGRILTIA--------------------------------------------------YGSSVKFWDAKS 214 (334)
T ss_pred --CcceeeccCCCEEEEe--------------------------------------------------cCceeEEecccc
Confidence 6789999999998866 1112223333
Q ss_pred CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCc
Q 002164 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 322 ~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
-|.++....+..+.+.+++|+...++... .+..++.+|.++++...... .+....+
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGg-------------ed~~~~kfDy~TgeEi~~~n-----------kgh~gpV 270 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGG-------------EDFKVYKFDYNTGEEIGSYN-----------KGHFGPV 270 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecC-------------cceEEEEEeccCCceeeecc-----------cCCCCce
Confidence 23333333336788899999885443332 12367788888766544421 1222345
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
..+.|||||...+. .++++.|.+|..
T Consensus 271 hcVrFSPdGE~yAs-------------GSEDGTirlWQt 296 (334)
T KOG0278|consen 271 HCVRFSPDGELYAS-------------GSEDGTIRLWQT 296 (334)
T ss_pred EEEEECCCCceeec-------------cCCCceEEEEEe
Confidence 67899999985444 255667777764
No 316
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0011 Score=72.45 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=69.4
Q ss_pred ceEEEEEcCCeeeecC--CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCcccc
Q 002164 314 TQLVLVSLDGTVKEIG--PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~~g~~~~l~--~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~ 389 (958)
..+++.++.....+.. .. +.+..+.|.|---++++.+.+ .+.+||+...+ ++.|....
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~---- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS---- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC----
Confidence 4567777743333322 12 667788999988888887744 78999987432 22222211
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCce--------
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGI-------- 461 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~-------- 461 (958)
..+..++.+|.|..|++. +....+..+|+ .+.++..+.+-.+...++++
T Consensus 608 ---------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 608 ---------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred ---------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccce
Confidence 245678899999988883 34455666665 23443333442222233333
Q ss_pred --eeecCCceEEEEE
Q 002164 462 --SWCDDSLALVYES 474 (958)
Q Consensus 462 --~~spDg~~l~~~~ 474 (958)
+-|+||..++|-.
T Consensus 665 fas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHG 679 (733)
T ss_pred eeeecCCCcEEEEee
Confidence 2356777777764
No 317
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.78 E-value=0.00015 Score=85.44 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=64.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-----------------
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~----------------- 732 (958)
.|+||++||.... .......+..|+++||.|++ .|.+|||.+...
T Consensus 449 ~P~VVllHG~~g~---------------~~~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITGA---------------KENALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCCC---------------HHHHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 6899999994211 11112446678889999999 555666666211
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 733 --------~~~~~~~~~D~~~av~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
++-+.+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1134677888888777776 21 124567999999999999999998864
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.77 E-value=0.00084 Score=74.03 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
-+...+|-|||..|+... ...|+++|+..|.. +.|-.+... +.-++||.||+.++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt-----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT-----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce-----EEEEEEccCCceeccC
Confidence 578899999999999865 56899999886654 444333332 7789999999999855
No 319
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00051 Score=72.25 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=47.3
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE----EeeccccCceeeecCCceEEEEEe
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.+.++..|+||+.+++- +..+.|-++++ .+.+.+ ..+...+..+.|+||.++++-.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~-----~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA-----KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe-----ceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 56789999999999984 33445666663 222332 223456788999999999887654
Q ss_pred ccccceEEEEEcCCC
Q 002164 476 YKTRRTRTWVISPGS 490 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~ 490 (958)
..+ ..|..+..+.
T Consensus 345 ~~~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 345 DNE--AAVTKLAVDK 357 (398)
T ss_pred CCc--eeEEEEeecc
Confidence 443 5676666544
No 320
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.76 E-value=0.024 Score=70.00 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
+...++|..||+++++.+-.... +.+..+.+|+- +| ...-. ...++-...++|.|.|..|+.......
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 44679999999998886332111 12445777773 43 22222 122334456899999999998875333
Q ss_pred cceEEEEEcCCCCCC-CcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDV-APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...|..+.-.|-.. +...-++.....+.. +.|++|+..|+...
T Consensus 280 -~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 280 -RHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 35566666555211 111111111122222 88999999988876
No 321
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.72 E-value=0.0022 Score=66.92 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
....+++||||+.+||+... ++ . ..|++... ++ ....+. .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~----------------------~~--~------~~L~~~~~--~~---~~~~~~---~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG----------------------DG--G------RSLYVGPA--GG---PVRPVL---TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc----------------------CC--C------CEEEEEcC--CC---cceeec---cCC
Confidence 46789999999999998821 00 0 36777654 22 222321 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
....|+|++||...++ .+ +.....+++ +...++ ...+-..... ..+..+++||||.++++..
T Consensus 67 ~l~~PS~d~~g~~W~v-~~------~~~~~~~~~-~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTV-DD------GSGGVRVVR-DSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEE-Ec------CCCceEEEE-ecCCCcceeEEecccccC---CceEEEEECCCCcEEEEEE
Confidence 6899999999754444 32 122223332 323333 2333221111 0278999999999999883
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.012 Score=67.10 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=104.7
Q ss_pred CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE--ecCCeEEEEEecCCCCCCCCCCCC
Q 002164 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIPLLRGDPPKKPLV 275 (958)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~~~~~~~~~~~~~~ 275 (958)
-||++|.. . +..+..|-+++++.-+..+++..++... +...++ .|.-.+++....- ..|..
T Consensus 139 ydGr~~fi-n-------dk~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~e~------~~Plp 201 (635)
T PRK02888 139 YDGRYLFI-N-------DKANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNGEF------RIPLP 201 (635)
T ss_pred cceeEEEE-e-------cCCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCccc------ccccC
Confidence 48877654 3 3347889999999888777777666421 223333 3677777654100 00001
Q ss_pred CCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeecC
Q 002164 276 PLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 276 ~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
+.+..+...+ + ..+.+-.+|. +-+ ..++.-++.....+++|||+++++++...
T Consensus 202 nDGk~l~~~~----------------e---------y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs 256 (635)
T PRK02888 202 NDGKDLDDPK----------------K---------YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS 256 (635)
T ss_pred CCCCEeeccc----------------c---------eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCc
Confidence 1111110000 0 2234556665 322 23333234556789999999999986321
Q ss_pred CccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCC
Q 002164 354 PYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRD 433 (958)
Q Consensus 354 ~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 433 (958)
. ....+...+............. ..-.+.+||+...+ ..+
T Consensus 257 E---------~G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V---------------~gn 296 (635)
T PRK02888 257 E---------EGVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTI---------------GGS 296 (635)
T ss_pred c---------cCcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEE---------------CCC
Confidence 1 1123333333221111111100 11246678886554 134
Q ss_pred eEEEEeCCCCC----CCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 434 IIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 434 ~l~~~~~~~~~----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|-++|. .. +.+............++.+||||++++.+.... ..+-++|+..
T Consensus 297 ~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS---~tVSVIDv~k 352 (635)
T PRK02888 297 KVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS---PTVTVIDVRK 352 (635)
T ss_pred EEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC---CcEEEEEChh
Confidence 5777875 22 122222223344456789999999998775433 3466777665
No 323
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.69 E-value=0.0021 Score=62.29 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=120.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+..+.+.-||++.+.+.. ...|.+|++..|...+-....+.. +-..+-+-|...|+..
T Consensus 18 gaV~avryN~dGnY~ltcGs---------drtvrLWNp~rg~liktYsghG~E----VlD~~~s~Dnskf~s~------- 77 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGS---------DRTVRLWNPLRGALIKTYSGHGHE----VLDAALSSDNSKFASC------- 77 (307)
T ss_pred cceEEEEEccCCCEEEEcCC---------CceEEeecccccceeeeecCCCce----eeeccccccccccccC-------
Confidence 36788899999999988653 567888999888877665555433 5567777787777743
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
. +...++++|+ +|+ .+++..+ +.+..+.|..+..-
T Consensus 78 ----------------G--------------------------gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 78 ----------------G--------------------------GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ----------------C--------------------------CCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 0 3456788888 885 4555555 78888999877665
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++-.+ ++..+.+||-.....+++..+... ..++.++..+ +..|+-
T Consensus 116 v~Sgs-------------fD~s~r~wDCRS~s~ePiQildea----------~D~V~Si~v~--~heIva---------- 160 (307)
T KOG0316|consen 116 VASGS-------------FDSSVRLWDCRSRSFEPIQILDEA----------KDGVSSIDVA--EHEIVA---------- 160 (307)
T ss_pred EEecc-------------ccceeEEEEcccCCCCccchhhhh----------cCceeEEEec--ccEEEe----------
Confidence 55444 456899999986555444332211 1222333222 122221
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+..+.+..+|+ ..|.... ......+..+.||+||+..+..+-. +.|..+|-++|
T Consensus 161 ---GS~DGtvRtydi--R~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~----stlrLlDk~tG 215 (307)
T KOG0316|consen 161 ---GSVDGTVRTYDI--RKGTLSS--DYFGHPITSVSFSKDGNCSLASSLD----STLRLLDKETG 215 (307)
T ss_pred ---eccCCcEEEEEe--ecceeeh--hhcCCcceeEEecCCCCEEEEeecc----ceeeecccchh
Confidence 133445666664 2221110 1123456789999999998877543 34777887775
No 324
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.67 E-value=0.0013 Score=71.98 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=41.3
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHH-------HHHHhCCCcEEEEEeCCCCcc
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~p~~~H~ 876 (958)
.+++|++|+++++|..|.+.| +.|+..+. +.++..|..+-+.+-+..||.
T Consensus 292 DLr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 292 DLRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred ehhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 356789999999999999998 99985443 566777888888888999996
No 325
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.018 Score=61.29 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
..||+++. ++..+.+... .....++|||||+.++++-.. .+.|+.++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 46999997 5566666664 566789999999999888644 2367777765
No 326
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.033 Score=53.67 Aligned_cols=137 Identities=7% Similarity=0.011 Sum_probs=75.4
Q ss_pred cceEEEEEc-CCeee-ecCCC-ccc-cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCcc
Q 002164 313 TTQLVLVSL-DGTVK-EIGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~-~l~~~-~~~-~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~ 387 (958)
.-.||+-|- .|+.- .+... +.+ .-+.|+ |-.++..+ .++.|..||+. ...++.+...-..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs-------------qdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS-------------QDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC-------------CCceEEEEeeeccceeeeccCcccC
Confidence 346888887 66433 33333 333 344564 54444333 24589999987 3344444321110
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spD 466 (958)
.... ...+..+...|.|+.++-- .....-.++|+ .|+.. +....+..+++.+.|||.
T Consensus 227 ~gle------ssavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 227 GGLE------SSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred CCcc------cceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCCC
Confidence 0000 0234567888888876541 12233456664 45444 444667778899999998
Q ss_pred CceEEEEEeccccceEEEEEcCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
-.+++..+- + ..|.+-|+.+
T Consensus 285 a~yllt~sy-d---~~ikltdlqg 304 (350)
T KOG0641|consen 285 AHYLLTCSY-D---MKIKLTDLQG 304 (350)
T ss_pred ceEEEEecc-c---ceEEEeeccc
Confidence 877765543 3 2466666655
No 327
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.64 E-value=0.00055 Score=71.97 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=65.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CCcEEEEcCCCCCCCCCCcccc-----h-hh--HHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----D-RF--VEQ 738 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~vl~~~~~~~~G~G~~~~~-----~-~~--~~~ 738 (958)
.+++|++-|.|. ...++..+...+.+ ..|.|+. .+..|+...... . .. ...
T Consensus 2 ~~li~~IPGNPG---------------lv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPG---------------LVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCC---------------hHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 578899988763 22333344444543 4788888 555565433222 1 11 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccC
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (958)
-++-..+.++.+.........++.++|||.|+++++.++.+.+ ..+..++...|.
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 3333344444444432113468999999999999999999998 577888877774
No 328
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.012 Score=56.59 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=65.1
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..++..|.|+.|+....+ ....+||+.|+...+-.. | ....++.+.|||...+
T Consensus 233 avaav~vdpsgrll~sg~~d-------------ssc~lydirg~r~iq~f~-p-----------hsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHAD-------------SSCMLYDIRGGRMIQRFH-P-----------HSADIRCVRFSPGAHY 287 (350)
T ss_pred eeEEEEECCCcceeeeccCC-------------CceEEEEeeCCceeeeeC-C-----------CccceeEEEeCCCceE
Confidence 45678899999988765432 367799999876544221 1 1134678999996655
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-----EeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
++- .+....|.+.|+ .|.-..+| ..+....-...|.|..-.++.++.+.+ ..||.+
T Consensus 288 llt-------------~syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~ 348 (350)
T KOG0641|consen 288 LLT-------------CSYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWAL 348 (350)
T ss_pred EEE-------------ecccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEecc
Confidence 443 134556777764 65544444 233334445678887644444433333 456654
No 329
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.64 E-value=0.00088 Score=73.75 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCC
Q 002164 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (958)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (958)
+..-...|.|+|+|||+.++.++....-+ .+.|+||+.-.++..-.+.+. +-+.+-.++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 33344689999999998888888776533 478888876444322111111 11223346899
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+|++.|.+|..++ +...+++.++++.. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88899999988874 89999999999984
No 330
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.012 Score=67.76 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC-CCCCCceeeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~~~lt~~~~~~ 189 (958)
..-.++||.|+++|..-.+ +.|.+|.--. ++.-...+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4557889999998876553 3566765322 111123455543 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+...+||+||.+|+- +.....|.+|.+++++.+-|-. +.+.+..+.||||+......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~kqfLPR-----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGKKQFLPR-----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCCcccccc-----cCCeeEEEEEcCCCCeEEEE
Confidence 7889999999999887 4447788888888888444422 22337799999999877765
No 331
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.60 E-value=0.011 Score=66.27 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=50.6
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+..++.||+|+.|+-..... ..+...|++|+. ..=.+...|..+...+..+.|||||++|+..+.+..
T Consensus 527 Ev~~l~~s~~gnliASaCKS~--------~~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt- 595 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSS--------LKEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT- 595 (764)
T ss_pred eEEEEEecCCCCEEeehhhhC--------CccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeecCce-
Confidence 356788999998777532211 123445888884 222344567778888999999999999998875544
Q ss_pred ceEEEEE
Q 002164 480 RTRTWVI 486 (958)
Q Consensus 480 ~~~l~~~ 486 (958)
..||..
T Consensus 596 -~sl~~~ 601 (764)
T KOG1063|consen 596 -VSLYEV 601 (764)
T ss_pred -EEeeee
Confidence 556655
No 332
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.60 E-value=0.00046 Score=75.53 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred CCccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec
Q 002164 330 PPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 330 ~~~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
++..++++.|.| |-.+|++..++ +.|.+|.+..+........|... .......+.++.|.|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~dd-------------g~i~lWr~~a~gl~e~~~tPe~~-----lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDD-------------GQINLWRLTANGLPENEMTPEKI-----LTIHGEKITSLRFHP 687 (1012)
T ss_pred cCceeeecccCCCChHHeeecccC-------------ceEEEEEeccCCCCcccCCccee-----eecccceEEEEEecc
Confidence 335678899999 88899988744 48889988743222111111000 001113456677777
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 409 DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
=..-++. ..+.+..|-+||+ .++...-.+..+...+.+++|||||+.|+....++ +|+++.+
T Consensus 688 LAadvLa------------~asyd~Ti~lWDl--~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----~~rVy~P 749 (1012)
T KOG1445|consen 688 LAADVLA------------VASYDSTIELWDL--ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----TLRVYEP 749 (1012)
T ss_pred hhhhHhh------------hhhccceeeeeeh--hhhhhhheeccCcCceeEEEECCCCcceeeeecCc----eEEEeCC
Confidence 3222222 1234556888986 44555566777777889999999999999876443 4777777
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+++ ..+.++.... +..++ .+.|.-||++|+...
T Consensus 750 rs~e---~pv~Eg~gpv--gtRgA-Ri~wacdgr~viv~G 783 (1012)
T KOG1445|consen 750 RSRE---QPVYEGKGPV--GTRGA-RILWACDGRIVIVVG 783 (1012)
T ss_pred CCCC---CccccCCCCc--cCcce-eEEEEecCcEEEEec
Confidence 7642 2232222111 00011 155777777766654
No 333
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.60 E-value=0.0011 Score=70.79 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
.....++++|..|+.++- ++-....+..++-....+++..+++.+++.-.. ++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw---~nPd~~~~~~~~edYi~e~l~~aid~v~~itg~--~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISW---RNPDASLAAKNLEDYILEGLSEAIDTVKDITGQ--KDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEec---cCchHhhhhccHHHHHHHHHHHHHHHHHHHhCc--cccceeeEecchHHHHHHHHhhhh
Confidence 456688899999988333 222223334455555668888999999886333 589999999999999999998877
Q ss_pred c-eeEEEEeccCCC
Q 002164 783 L-FCCGIARSGAYN 795 (958)
Q Consensus 783 ~-~~a~v~~~~~~~ 795 (958)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 787777665444
No 334
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00035 Score=82.19 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=125.6
Q ss_pred CCCCCcccceeecCCCCe----EEEEEeeccccCCCCCceEEEEEcCC----CceeeccCCCCccccccccceEEecCCe
Q 002164 185 FPDGAKLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~----iaf~~~~~~~~~~~~~~~l~~~~~~~----g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
+.....-+..+|++-|.. ||- +.++++|-+|+++. ++...|..... .++.+..+.|.+.+.
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaG---------G~edG~I~ly~p~~~~~~~~~~~la~~~~--h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAG---------GLEDGNIVLYDPASIIANASEEVLATKSK--HTGPVLGLDFNPFQG 129 (1049)
T ss_pred ccccccceeeeecccCCCccceeec---------cccCCceEEecchhhccCcchHHHhhhcc--cCCceeeeeccccCC
Confidence 333346778999998888 443 33455666666543 22222221111 122366788998876
Q ss_pred -EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC----
Q 002164 257 -LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP---- 331 (958)
Q Consensus 257 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~---- 331 (958)
+|+... ..++|+++|+..-....+.+
T Consensus 130 nlLASGa-------------------------------------------------~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 130 NLLASGA-------------------------------------------------DDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccC-------------------------------------------------CCCcEEEeccCCcCCCCCCCCCCC
Confidence 666330 34679999984433333321
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+..++|...-.+|+.+... .+.+.+||++.++ +..++..... .....+.|.||
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHPD 217 (1049)
T ss_pred cccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc-----------cceeeeeeCCC
Confidence 567778887766676655533 3478899999663 2233332211 22457999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+.+-+...... ...-.|-+||+ -......+.++.+...+-.+.|++.+..++.++..++ +++.++..
T Consensus 218 ~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~ 284 (1049)
T KOG0307|consen 218 HATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPN 284 (1049)
T ss_pred CceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCCCchhhhcccCCC---CeeEecCC
Confidence 88766642221 11234667774 1123334555667777888999999988888876664 57777877
Q ss_pred CC
Q 002164 490 SK 491 (958)
Q Consensus 490 ~~ 491 (958)
++
T Consensus 285 tg 286 (1049)
T KOG0307|consen 285 TG 286 (1049)
T ss_pred Cc
Confidence 75
No 335
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.59 E-value=0.0062 Score=65.29 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..++.+.+.-...+|+-++.. ++|.+..+.++.. ..++...+ ..++-+.|||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 445555555567788877743 4788888775542 22222111 233668899988
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce--EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+.++.. ++..+.+.+||+ .|..+. ....+.....+++|||....|+.+...+ .+|+.+|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 877764 255778999996 554432 2245667788999999998888877666 46888887
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
........+..+.+... +.|+++|.+|+.+.
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333444443333 78999999888765
No 336
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.59 E-value=0.067 Score=66.19 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=52.8
Q ss_pred eEEEEEcCCeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 315 QLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
.|-+++-+|+..-..+. +--..++|.|.|..||.+... +. ..+|-.+.-+|-.....+...
T Consensus 238 ~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~---------~~~VvFfErNGLrhgeF~l~~------- 300 (928)
T PF04762_consen 238 VIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PD---------RHDVVFFERNGLRHGEFTLRF------- 300 (928)
T ss_pred EEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc-CC---------CcEEEEEecCCcEeeeEecCC-------
Confidence 35555557777666665 445688999999999988742 21 235666666654433332211
Q ss_pred cccccccCcceeeeecCCCCceEEE
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
......+..+.|++|+.-|+++.
T Consensus 301 --~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 301 --DPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred --CCCCceeeEEEECCCCCEEEEEe
Confidence 00113457899999999999974
No 337
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.58 E-value=0.0065 Score=60.85 Aligned_cols=114 Identities=19% Similarity=0.294 Sum_probs=74.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-e-ccCCCCccccccccceEEec--CCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-P-LFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~-lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~~ 265 (958)
.+..+.|-|++++|+-.. ..+|-+|+++.+..+ . +...........+.+-+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999865 457777777755431 1 11111111112255788997 88888876
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~Sp 341 (958)
+.+.|+-+|+ +- +...|-.. ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3345666666 32 22233222 4578899999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
+-++++++..+ ++.+.+||...
T Consensus 225 nkq~~lvt~gD------------dgyvriWD~R~ 246 (370)
T KOG1007|consen 225 NKQHILVTCGD------------DGYVRIWDTRK 246 (370)
T ss_pred CceEEEEEcCC------------CccEEEEeccC
Confidence 99999888744 34899999873
No 338
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.0068 Score=61.56 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=118.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC--eEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
..|.|+|+...- +...|- .+.+.++...|+|+-. +|+-.. .+.+|-+|++..=+...-......
T Consensus 63 etI~IYDm~k~~---qlg~ll--~HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~H~~ 128 (362)
T KOG0294|consen 63 ETIHIYDMRKRK---QLGILL--SHAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKAHKG 128 (362)
T ss_pred CcEEEEeccchh---hhccee--ccccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeeccccc
Confidence 479999984411 111221 1335788889988876 777744 366777777554222221111222
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
.+..++..|-|++-..+. +...|-.+|
T Consensus 129 ----~Vt~lsiHPS~KLALsVg-------------------------------------------------~D~~lr~WN 155 (362)
T KOG0294|consen 129 ----QVTDLSIHPSGKLALSVG-------------------------------------------------GDQVLRTWN 155 (362)
T ss_pred ----ccceeEecCCCceEEEEc-------------------------------------------------CCceeeeeh
Confidence 267888899997655440 223466777
Q ss_pred c-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCccccccc
Q 002164 321 L-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 321 ~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~ 397 (958)
+ .|+...+..- .....+.|+|.|.++++.... .|.+|.++... .+.+.. +
T Consensus 156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~-~------------ 208 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIEN-P------------ 208 (362)
T ss_pred hhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhc-c------------
Confidence 7 7754443333 334568999999998888733 77788776422 122211 1
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceee--ecCCceEEEEEe
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW--CDDSLALVYESW 475 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~--spDg~~l~~~~~ 475 (958)
.....+.|- ++..+++- ..+..+-.+|- .+......+..+..++-.+.+ .|++.+|+..+.
T Consensus 209 -~r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 209 -KRILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred -ccceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 001112221 22333331 22234556663 123334455666667766542 456777776655
Q ss_pred ccccceEEEEEcCCCC
Q 002164 476 YKTRRTRTWVISPGSK 491 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~ 491 (958)
++- ..+|.++.+..
T Consensus 272 DG~--I~vWd~~~~~k 285 (362)
T KOG0294|consen 272 DGF--IKVWDIDMETK 285 (362)
T ss_pred Cce--EEEEEcccccc
Confidence 443 78888887764
No 339
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.56 E-value=0.012 Score=61.14 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=151.8
Q ss_pred CCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCC
Q 002164 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (958)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~ 175 (958)
-.+|+.+..++....++++..+ +++|+..+.+ +.+.+|+.++
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD---------------------------------g~~riWd~~G--- 134 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYD---------------------------------GTSRIWDLKG--- 134 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecC---------------------------------CeeEEEecCC---
Confidence 3566667777776678888888 7888877654 5778999854
Q ss_pred CCceeeeccCCCCCcccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEe
Q 002164 176 LGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~ws 252 (958)
....++.+++ +.+...+| .+|...-.|+.. ..+....||.++....... +...+.. +.+.++.-.
T Consensus 135 -k~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsa-----s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk----~~V~sVsv~ 202 (423)
T KOG0313|consen 135 -KSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSA-----SMDQTLRLWKWNVGENKVKALKVCRGHK----RSVDSVSVD 202 (423)
T ss_pred -ceEEEEecCC--cceeeeEEEecCCccceEEEe-----cCCceEEEEEecCchhhhhHHhHhcccc----cceeEEEec
Confidence 5566776643 55666666 344432234331 1334566777775543222 2222222 237788888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCC--cccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe---eee
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKR--DIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT---VKE 327 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~ 327 (958)
+||..+...+.+..-. +|+.+.. ..... ..+++.. .+- .....|. ...
T Consensus 203 ~sgtr~~SgS~D~~lk------------iWs~~~~~~~~~E~------~s~~rrk--------~~~-~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLK------------IWSVETDEEDELES------SSNRRRK--------KQK-REKEGGTRTPLVT 255 (423)
T ss_pred CCCCeEEeecccceee------------ecccCCCccccccc------cchhhhh--------hhh-hhhcccccCceEE
Confidence 9999888774433221 2220000 00000 0000000 000 0000121 122
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceee
Q 002164 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
|..+ ..+.++.|++ .. .+|+.. .+..|.+||+.+ +....++.. .....+.
T Consensus 256 l~GHt~~Vs~V~w~d-~~-v~yS~S------------wDHTIk~WDletg~~~~~~~~~--------------ksl~~i~ 307 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-AT-VIYSVS------------WDHTIKVWDLETGGLKSTLTTN--------------KSLNCIS 307 (423)
T ss_pred ecccccceeeEEEcC-CC-ceEeec------------ccceEEEEEeecccceeeeecC--------------cceeEee
Confidence 2223 6678899997 33 444431 245899999984 444444332 2234677
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC-CCc--eEEEeeccccCceeeecCCceEEEEEeccccceE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+|..+.|+.- +...++.++|. ..+ +.. .++..+...+..+.|+|-..+++.+...++. .+
T Consensus 308 ~~~~~~Ll~~g-------------ssdr~irl~DP--R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~k 371 (423)
T KOG0313|consen 308 YSPLSKLLASG-------------SSDRHIRLWDP--RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VK 371 (423)
T ss_pred cccccceeeec-------------CCCCceeecCC--CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EE
Confidence 88877776652 34456888884 433 222 3446677789999999999888877766653 66
Q ss_pred EEEEcCC
Q 002164 483 TWVISPG 489 (958)
Q Consensus 483 l~~~~~~ 489 (958)
||.+...
T Consensus 372 lWDvRS~ 378 (423)
T KOG0313|consen 372 LWDVRST 378 (423)
T ss_pred EEEeccC
Confidence 7766543
No 340
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.00013 Score=66.76 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCc
Q 002164 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (958)
Q Consensus 743 ~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (958)
-.+.-.|++++. =|.+..+.|.||||++|+.+..++|++|..+|+.+|++|....--++.+ +...| .+|
T Consensus 87 H~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyd-------dDv~y--nsP 155 (227)
T COG4947 87 HRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYD-------DDVYY--NSP 155 (227)
T ss_pred HHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccccc-------Cceee--cCh
Confidence 344455676653 2457889999999999999999999999999999999884421111111 11111 344
Q ss_pred ccccCCCC----------CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 823 FMSANKLK----------KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 823 ~~~~~~~~----------~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
.+++..+. .-+.+..|..|+.. .+..++-+.|..+.++..+.+..+..|-.
T Consensus 156 ~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 156 SDYLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hhhccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 44433332 34677788888774 46678888888877777766666655543
No 341
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.056 Score=62.48 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCC---------chhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPP---------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~ 179 (958)
.++..+.|.|++-..+...++-... +..|.++..-+..+.+-.+-......+.+.+|.||+..+ + ...
T Consensus 52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r--~~i 128 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-R--KCI 128 (1202)
T ss_pred CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-C--ceE
Confidence 4688999999987666555442222 223333333334444444444444455567899999844 1 223
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR 232 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (958)
..+|++ .-.+...+|.|-.+.|+-.+- ...|.+||..|-..+
T Consensus 129 avltGH--nHYVMcAqFhptEDlIVSaSL---------DQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 129 AVLTGH--NHYVMCAQFHPTEDLIVSASL---------DQTVRVWDISGLRKK 170 (1202)
T ss_pred EEEecC--ceEEEeeccCCccceEEEecc---------cceEEEEeecchhcc
Confidence 344552 348899999998888887553 557888887764333
No 342
>PRK04940 hypothetical protein; Provisional
Probab=97.54 E-value=0.0018 Score=62.17 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=71.2
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---CCcccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002164 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (958)
++++|+|.|+||+.|.+++.++ . ++ +|+++|........ .+... ....+ ..+-..+.. .+-.-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-g-~~-aVLiNPAv~P~~~L~~~ig~~~-~y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-G-IR-QVIFNPNLFPEENMEGKIDRPE-EYADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-C-CC-EEEECCCCChHHHHHHHhCCCc-chhhh-hHHHHHHhh-----hcCcccEEE
Confidence 4699999999999999999998 3 44 45566765432110 01000 00101 111111111 011224589
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+..+.|++.+ +.++.+.|+.. .+..+.+|++|.|.. ..+.+..|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999988 77776666432 256789999999864 4566888999874
No 343
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.50 E-value=0.002 Score=65.58 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred cccceeecCCCCe---EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKH---LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~---iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.-...+|+=|-.. ++.+ +...+.|+++|+.+++...-....+.. ++.+.+-|+.-.|+.+.
T Consensus 91 sfytcsw~yd~~~~~p~la~--------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~---- 154 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA--------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSA---- 154 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe--------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEe----
Confidence 4556788776542 2221 235789999999988765544434333 77888999875444431
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-----ccccccccC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPS 340 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-----~~~~~~~~S 340 (958)
+ ....|-+.++ ++.-.-+..+ +.+.+++||
T Consensus 155 ----------------S----------------------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 155 ----------------S----------------------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ----------------c----------------------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 0 1122444455 5544444433 567899999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
+||.+|+-... +..+-+|++..++.
T Consensus 191 ~~gd~i~ScGm-------------Dhslk~W~l~~~~f 215 (385)
T KOG1034|consen 191 LDGDRIASCGM-------------DHSLKLWRLNVKEF 215 (385)
T ss_pred CCCCeeeccCC-------------cceEEEEecChhHH
Confidence 99998876653 44899999885443
No 344
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.48 E-value=0.0021 Score=66.58 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=85.0
Q ss_pred eceeEEEccCCCCCCceeeec---cC-CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQ---GF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt---~~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~ 238 (958)
..|||+|+++ .+.|. .. +........+.++.+.+|||-..+ ..++|+++|+.+-++.-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 3699999954 33332 12 111134455566677799995432 3778999998765444333333
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
.+. +..+++++||..||.++. +..-|-+
T Consensus 173 ~~~----lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KGP----LAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CCc----eeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 332 668999999999997621 1122444
Q ss_pred EEc-CCe-eeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 319 VSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 319 ~~~-~g~-~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
+.+ +|+ ...+-.+ ..+.+.+||||+++|..+++. .+|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-------------eTVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT-------------ETVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC-------------CeEEEEEecc
Confidence 555 552 3333333 567899999999999988854 3788887764
No 345
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.48 E-value=0.0013 Score=67.76 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEeccCCCCCCCCCCcc-----c
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPFGFQ-----N 805 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~~~~~-----~ 805 (958)
......=+..++.+|.++..+ +++-++||||||..++.++..+. +.+...|.+++.++.......-. .
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 344556678899999998766 59999999999999999988742 25788999988887543211000 0
Q ss_pred ccchhhhcHHHHHhcCcccccCCC--CCCEEEEeeC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002164 806 EDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (958)
Q Consensus 806 ~~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H 875 (958)
..+ +-.....|...-... -.++ ...+|-|.|. .|..|| ...++.+...++.....++-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 111111121111000 0122 3579999998 899998 8888888888887777888888876 578
Q ss_pred cCCCcccHHHHHHHHHHHHH
Q 002164 876 GYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~ 895 (958)
.-. .++ ..+.+.|.+||.
T Consensus 236 S~L-heN-~~V~~~I~~FLw 253 (255)
T PF06028_consen 236 SQL-HEN-PQVDKLIIQFLW 253 (255)
T ss_dssp CGG-GCC-HHHHHHHHHHHC
T ss_pred ccC-CCC-HHHHHHHHHHhc
Confidence 753 333 456677777763
No 346
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.1 Score=53.21 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=76.2
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
.+|...|. ..++...|||.+..|+.++ - ...|.++++...+.+........ +-.++|.++.+.+.
T Consensus 6 ~~l~npP~-d~IS~v~f~~~~~~LLvss-------W--DgslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~~~~ 70 (323)
T KOG1036|consen 6 FELENPPE-DGISSVKFSPSSSDLLVSS-------W--DGSLRLYDVPANSLKLKFKHGAP-----LLDCAFADESTIVT 70 (323)
T ss_pred cccCCCCh-hceeeEEEcCcCCcEEEEe-------c--cCcEEEEeccchhhhhheecCCc-----eeeeeccCCceEEE
Confidence 34443332 2689999999999998866 2 34555666666565555444433 56788887665443
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSL 337 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~ 337 (958)
-. -..+|-++|+ +|+..++..+ ..+..+
T Consensus 71 G~--------------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci 100 (323)
T KOG1036|consen 71 GG--------------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCI 100 (323)
T ss_pred ec--------------------------------------------------cCceEEEEEecCCcceeeccCCCceEEE
Confidence 22 2356889999 8887777766 777777
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
..++--..++..+ +++.|.+||...
T Consensus 101 ~~~~~~~~vIsgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 101 EYSYEVGCVISGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred EeeccCCeEEEcc-------------cCccEEEEeccc
Confidence 7776333333332 456899999875
No 347
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.44 E-value=0.0059 Score=71.84 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=52.1
Q ss_pred ceeEEEccCCCCCCceeee-ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC--ceeeccCCCCc
Q 002164 164 GIGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDI 240 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g--~~~~lt~~~~~ 240 (958)
+|.+.|. || ...+.+ .. ....+.+|.|||||++|||+... ..-.+...||+.++.+. ...+| +-.
T Consensus 330 ~L~~~D~--dG--~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~---e~~~g~s~vYv~~L~t~~~~~vkl---~ve 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVEIE--DTISVYHPDISPDGKKVAFCTGI---EGLPGKSSVYVRNLNASGSGLVKL---PVE 397 (912)
T ss_pred eEEEEec--CC--CCceEEEec--CCCceecCcCCCCCCEEEEEEee---cCCCCCceEEEEehhccCCCceEe---ecc
Confidence 6888887 55 555555 32 33578999999999999994432 22235778999999863 33444 211
Q ss_pred cccccccceEEe--cCC-eEEEEE
Q 002164 241 YLNAIFDNFVWV--NNS-TLLVCT 261 (958)
Q Consensus 241 ~~~~~~~~~~ws--pDG-~~l~~~ 261 (958)
. ..-|+|- .+| ..|+|+
T Consensus 398 ~----aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 N----AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred c----ccccceEecCCCCeEEEEE
Confidence 1 2246665 666 566666
No 348
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.053 Score=55.22 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.++.+.|||.+..|+.++.+ +.|.++++.. ...+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~----~~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPA----NSLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccc----hhhhhh--eecCC
Confidence 36789999999999888775 5788998854 222222 33445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
.+..-.|.+ -.++++ ++-...|.++|+.+++..++-.+... +..+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 677778875 446666 33467899999999988877655543 55566664
No 349
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.41 E-value=0.0056 Score=66.01 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC--C---CCC-----
Q 002164 735 FVEQLVACAEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--T---PFG----- 802 (958)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~---~~~----- 802 (958)
++--..-|++-|+.++.++-.- +.-++.++|+|+||++|..++.-.|..|.+++-.++.....+ . ..+
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 3334467888888888886322 234899999999999999999999999999998776432111 0 000
Q ss_pred ----c--------ccccchhhhcH---------HHHHhcCcc--cc---cCCC-CCCE-EEEeeCCCCCCCCChHHHHHH
Q 002164 803 ----F--------QNEDRTLWEAT---------STYVEMSPF--MS---ANKL-KKPI-LLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 803 ----~--------~~~~~~~~~~~---------~~~~~~sp~--~~---~~~~-~~P~-Lii~G~~D~~v~~~~~~~~~~ 854 (958)
+ .....++|... +.+.-.+.+ .+ ..+. +.|. ...|+..|..+| .++-.++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~l 315 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEEL 315 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHHH
Confidence 0 00113445321 111111111 11 1112 3344 567999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeC
Q 002164 855 FNALKGHGALCRLVILP 871 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p 871 (958)
++.++..|-++++..+.
T Consensus 316 ~~~l~~lgfda~l~lIk 332 (403)
T PF11144_consen 316 YEILKNLGFDATLHLIK 332 (403)
T ss_pred HHHHHHcCCCeEEEEec
Confidence 99999999999999884
No 350
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.41 E-value=0.28 Score=53.30 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=41.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec---cCCCCccccccccceEEecCCeEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
..+....|.|-+..|..+- |..+||.|+..+|...+- ....+. ..+..+.|.++|+.|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 4577889999888887755 478999999998765432 222221 2256788888887665
No 351
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0038 Score=61.35 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=141.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC-
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~- 188 (958)
.+..++||+.-..++++... + +.|.||++.. +...|..+.+.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~G----------------------D----------GSLrl~d~~~-----~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASG----------------------D----------GSLRLFDLTM-----PSKPIHKFKEHK 104 (311)
T ss_pred ceeEeeecCCCcceEEEEec----------------------C----------ceEEEeccCC-----CCcchhHHHhhh
Confidence 46678899988877776552 2 4788998632 23333323333
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC-CeEEEEEecCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN-STLLVCTIPLLRG 267 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD-G~~l~~~~~~~~~ 267 (958)
..+...-|++--+++..++. -++...|| +..-+...+...+... .+...+|||- +..+++++
T Consensus 105 ~EV~Svdwn~~~r~~~ltsS------WD~TiKLW--~~~r~~Sv~Tf~gh~~----~Iy~a~~sp~~~nlfas~S----- 167 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSS------WDGTIKLW--DPNRPNSVQTFNGHNS----CIYQAAFSPHIPNLFASAS----- 167 (311)
T ss_pred hheEEeccccccceeEEeec------cCCceEee--cCCCCcceEeecCCcc----EEEEEecCCCCCCeEEEcc-----
Confidence 37889999997777776553 23444455 4443333333222222 2668899975 45556541
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
.+ +.-.||-+...|+...|..+ ..+....||.=...+
T Consensus 168 ----------------gd--------------------------~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 168 ----------------GD--------------------------GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred ----------------CC--------------------------ceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 11 33446666656655555544 577888999988888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... ++.|+.||+..-. .+|.. .++....++.+.|||--..++..
T Consensus 206 l~Tg~v------------d~~vr~wDir~~r-~pl~e----------L~gh~~AVRkvk~Sph~~~lLaS---------- 252 (311)
T KOG0277|consen 206 LATGGV------------DNLVRGWDIRNLR-TPLFE----------LNGHGLAVRKVKFSPHHASLLAS---------- 252 (311)
T ss_pred EEecCC------------CceEEEEehhhcc-cccee----------ecCCceEEEEEecCcchhhHhhh----------
Confidence 888743 4489999987321 11111 12333567899999987776653
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec-CCceEEEEEeccccceEEEEEcC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.+.+..+.+|+.+..+ +..+....+..-+.++.||+ ++.+++-..+++. +|++++
T Consensus 253 --asYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~----l~Vw~p 308 (311)
T KOG0277|consen 253 --ASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL----LYVWNP 308 (311)
T ss_pred --ccccceEEecccccch-hhhhhhhccceEEeccccccccCceeeecccccc----eeeecc
Confidence 1334456677741111 12222223333456677877 4667777777664 555543
No 352
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.39 E-value=0.0002 Score=84.65 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC-CCC---CC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIG---EG 727 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~-~~G---~G 727 (958)
|+..+|.|..-..+ . +||+|++|||.+..+.. ..+... .....+..+..+|+.++||- ..| .|
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~--------~~~~~~--~~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSA--------SSFEII--SPAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeeccc--------cchhhc--CchhccccCCEEEEEecccceeceeeecC
Confidence 66788888753221 2 89999999986543321 111000 11223345577788777652 223 22
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccC
Q 002164 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (958)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (958)
.+.. .+.....|+..|++|+.++ ---||++|.|+|||+||..+..+... ...+|..+|..+|.
T Consensus 164 d~~~---~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAA---PGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCC---CCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 2222 2344566999999999985 22699999999999999998776652 22578888888775
No 353
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0028 Score=69.46 Aligned_cols=270 Identities=14% Similarity=0.116 Sum_probs=138.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+...+-.|-|.||+-.+ ..+.|.+|.+.||...+.+...+. +..++|.|.++.=+.+.......
T Consensus 401 g~Vr~iSvdp~G~wlasGs---------dDGtvriWEi~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGS---------DDGTVRIWEIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CeEEEEEecCCcceeeecC---------CCCcEEEEEeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCce
Confidence 4577778889999999843 466777888889988776655553 78999998875433221111111
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE----c-CCeeeecCCCccccccccCCCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSPDE 343 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~----~-~g~~~~l~~~~~~~~~~~SpDG 343 (958)
....+ -.|.++.... -.+++....+...-+ .....|.-. + .|-...|..+..+..+.|+-+|
T Consensus 467 ~ivnp--~~G~~~e~~~---------t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 467 LIVNP--IFGDRLEVGP---------TKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred EEeCc--cccchhhhcc---------hhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 00000 0000000000 000000000000000 001122222 1 1223344455778899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.+|+.+.... ....+.|+++.....+ .|.. ...+-+..+.|.|-..++++.
T Consensus 534 DYlatV~~~~----------~~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~FHPs~p~lfVa------- 584 (733)
T KOG0650|consen 534 DYLATVMPDS----------GNKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKFHPSKPYLFVA------- 584 (733)
T ss_pred ceEEEeccCC----------CcceEEEEeccccccc----Cchh--------hcCCceeEEEecCCCceEEEE-------
Confidence 9999987432 2346778877632211 1111 111234567888887777663
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
....|.++|+ ....-++.|..+...+..++.+|.|..|+..+..+ ++..+|++-+. ++........
T Consensus 585 -------Tq~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldlss-kPyk~lr~H~ 650 (733)
T KOG0650|consen 585 -------TQRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLSS-KPYKTLRLHE 650 (733)
T ss_pred -------eccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccCc-chhHHhhhhh
Confidence 2335777885 23223344444555677889999999988876443 35555555431 2222111111
Q ss_pred ---ccccCCCCCCce-EeccCCceEEEEe
Q 002164 504 ---EDVYSDPGSPMM-RRTSTGTYVIAKI 528 (958)
Q Consensus 504 ---~~~~~~~~~~~~-~~spdG~~l~~~~ 528 (958)
..+.....-|.+ +-|+||..++|-.
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEee
Confidence 111111222333 4578888887765
No 354
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.39 E-value=0.016 Score=62.24 Aligned_cols=213 Identities=19% Similarity=0.158 Sum_probs=123.4
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+..++.. ++. -.-.||+|..- +.+.-+||++||.... -.+...-....+.|.++|++.+...
T Consensus 63 e~~~L~~-~~~-~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit 124 (310)
T PF12048_consen 63 EVQWLQA-GEE-RFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSIT 124 (310)
T ss_pred hcEEeec-CCE-EEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEec
Confidence 3444544 333 34467788642 2246789999994211 1122222345567889999999832
Q ss_pred CCCCCC---------------CC--Ccc---------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 002164 720 TTPIIG---------------EG--DEE---------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (958)
Q Consensus 720 ~~~~~G---------------~G--~~~---------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S 767 (958)
..+-.+ -+ ... ....+......-+.+++.++.+++. .+|+|+||+
T Consensus 125 ~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G 201 (310)
T PF12048_consen 125 LPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHG 201 (310)
T ss_pred CCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeC
Confidence 222000 00 000 0112234556667788888887763 359999999
Q ss_pred hHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 768 YGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 768 ~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
.|+++++.++...+. .+.++|.+++...... ........+.+++.|+|=|++.. ....
T Consensus 202 ~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~-------------------~n~~l~~~la~l~iPvLDi~~~~-~~~~- 260 (310)
T PF12048_consen 202 TGAGWAARYLAEKPPPMPDALVLINAYWPQPD-------------------RNPALAEQLAQLKIPVLDIYSAD-NPAS- 260 (310)
T ss_pred hhHHHHHHHHhcCCCcccCeEEEEeCCCCcch-------------------hhhhHHHHhhccCCCEEEEecCC-ChHH-
Confidence 999999999998753 4789999887422100 00122244567889999888776 3221
Q ss_pred ChHHHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 847 LTMQSDRFFNALKG-HGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 847 ~~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
...+.+-....+. ....++-+.+++..|.....+ ..+.++|..||.++
T Consensus 261 -~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~~--~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 261 -QQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSGWQ--EQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHHHHHhccCCCceeEecCCCCCChhhHH--HHHHHHHHHHHHhh
Confidence 2222222222222 234567777777777653222 23788999999875
No 355
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.37 E-value=0.026 Score=58.26 Aligned_cols=182 Identities=11% Similarity=0.064 Sum_probs=116.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+..+.+-|-.+|++. +.....+-+||+++|+...-..+.-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~----~vr~vavS~rHpYlFs~g------ 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE----TVRGVAVSKRHPYLFSAG------ 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh----eeeeeeecccCceEEEec------
Confidence 57888899998888776 34477889999999987543222221 267889998888888661
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~ 345 (958)
...++--+|+ ..+. +..... ..+..++..|--..
T Consensus 213 -------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 213 -------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred -------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 1234556666 3332 333333 66777788887776
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+..+. +..+.+||+.++.. ..+..+. ..+.++.+.|-...++-
T Consensus 250 l~t~gr-------------Dst~RvWDiRtr~~V~~l~GH~-------------~~V~~V~~~~~dpqvit--------- 294 (460)
T KOG0285|consen 250 LVTGGR-------------DSTIRVWDIRTRASVHVLSGHT-------------NPVASVMCQPTDPQVIT--------- 294 (460)
T ss_pred EEecCC-------------cceEEEeeecccceEEEecCCC-------------CcceeEEeecCCCceEE---------
Confidence 665542 34899999986543 3333222 22234555553333333
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
.+.+..|.+||+ ..|+....++.+.-.++.++-.|+-..++.+
T Consensus 295 ----~S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 295 ----GSHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ----ecCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 255667899997 6777788888888888888888876544433
No 356
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.35 E-value=0.013 Score=62.48 Aligned_cols=227 Identities=11% Similarity=0.216 Sum_probs=128.2
Q ss_pred eceeEEEccCCCCCCc-------eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--Cc---
Q 002164 163 TGIGIHQLFPDGKLGQ-------EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GK--- 230 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-------~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~--- 230 (958)
++++|++......... ..+|+++.. .....+|++.-.--+.+. .....|-+||+.. .+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~--------~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSG--------SDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeec--------cCCCcEEEEeccccccCCcc
Confidence 5889998855432221 225666543 346689998655443322 2234455555443 21
Q ss_pred --eeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHH
Q 002164 231 --ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLF 308 (958)
Q Consensus 231 --~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~ 308 (958)
++.++..... .+..++|.+-.+.+|.+..
T Consensus 217 ~~p~~~~~~h~~----~VeDV~~h~~h~~lF~sv~--------------------------------------------- 247 (422)
T KOG0264|consen 217 VDPKTIFSGHED----VVEDVAWHPLHEDLFGSVG--------------------------------------------- 247 (422)
T ss_pred ccceEEeecCCc----ceehhhccccchhhheeec---------------------------------------------
Confidence 1222222222 2778999987766664411
Q ss_pred HHhhcceEEEEEc-CC--eeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc
Q 002164 309 DYYATTQLVLVSL-DG--TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (958)
Q Consensus 309 ~~~~~~~l~~~~~-~g--~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~ 383 (958)
..+.|.+.|+ ++ +...... . +.+..++|+|=+..|+.+... ++++.+||+..=.. .+..
T Consensus 248 ---dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~------------D~tV~LwDlRnL~~-~lh~ 311 (422)
T KOG0264|consen 248 ---DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA------------DKTVALWDLRNLNK-PLHT 311 (422)
T ss_pred ---CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC------------CCcEEEeechhccc-Ccee
Confidence 1234666666 43 1121111 1 677889999977777766532 45899999873221 2222
Q ss_pred CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC---------CCceEEEe-
Q 002164 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG---------EGPEILHK- 453 (958)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g---------~~~~~l~~- 453 (958)
+.+....+..+.|||+-..++... +..+.+.+||+..... +.+..|..
T Consensus 312 ----------~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 312 ----------FEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ----------ccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 223335567899999999887741 3345677888622211 11233322
Q ss_pred --eccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 454 --LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 454 --~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+...+..+.|.|.--+++.+...++ ..+||.+.
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 2345677899999888777665553 37788764
No 357
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.21 Score=58.08 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=132.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++-.++|.|---||+.+--. +.|.+||-.= |++ ..+.-. +.+
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~tl--i~rFde--HdG 52 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-GTL--IDRFDE--HDG 52 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-hhH--Hhhhhc--cCC
Confidence 45678899999888876543 3566776522 111 111211 335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.|++- +|++ +.....|-+|+-+.... +...-+ . -..+..+.|.+.=-||+.++
T Consensus 53 pVRgv~FH~~qp--lFVS-------GGDDykIkVWnYk~rrc--lftL~G-H-lDYVRt~~FHheyPWIlSAS------- 112 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVS-------GGDDYKIKVWNYKTRRC--LFTLLG-H-LDYVRTVFFHHEYPWILSAS------- 112 (1202)
T ss_pred ccceeeecCCCC--eEEe-------cCCccEEEEEeccccee--hhhhcc-c-cceeEEeeccCCCceEEEcc-------
Confidence 788899999775 4555 22355566666544322 211111 0 01155666777767777551
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
+ ...|.+++- ++ ....++.+ -.+....|.|-...|
T Consensus 113 --------------D----------------------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 113 --------------D----------------------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred --------------C----------------------------CCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 1 122444444 44 45566665 667788899988888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc---------C-c-------ccccccccCcceeeeecC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED---------I-P-------IAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~---------~-p-------~~~~~~~~~~~~~~~spD 409 (958)
+..+. +++|.+||+.|=..+........+. . + .-..++.-|+.-++|.|-
T Consensus 151 VSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 151 VSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 77763 4699999998643333222211100 0 0 012222333444555553
Q ss_pred CCCceEEEEeccCCCcccccccCC--eEEEEeCCCCCCCCceEE---EeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
-..|+- . +.+. .+|+++ ++ +.-.+ ..+-..+.++.|.|....|+..++++. .++|
T Consensus 218 lpliVS---G----------~DDRqVKlWrmn----et-KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVw 277 (1202)
T KOG0292|consen 218 LPLIVS---G----------ADDRQVKLWRMN----ET-KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVW 277 (1202)
T ss_pred cceEEe---c----------CCcceeeEEEec----cc-cceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEE
Confidence 332222 1 1122 256655 22 22222 345567888999998777776665554 6666
Q ss_pred EEcCC
Q 002164 485 VISPG 489 (958)
Q Consensus 485 ~~~~~ 489 (958)
.++-.
T Consensus 278 Dm~kR 282 (1202)
T KOG0292|consen 278 DMTKR 282 (1202)
T ss_pred ecccc
Confidence 65533
No 358
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.34 E-value=0.00042 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~ 223 (958)
.....|+|||||++|+|++.+. +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998733 147778885
No 359
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.31 E-value=0.0051 Score=63.56 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=48.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-- 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-- 780 (958)
.+++.+...++.|..+. ..|.+.........+.+..+..+.| ++.. ...++.|+|||+||.+|..+|.+-
T Consensus 18 ~la~~l~~~~~~v~~i~---~~~~~~~~~~~~si~~la~~y~~~I---~~~~--~~gp~~L~G~S~Gg~lA~E~A~~Le~ 89 (229)
T PF00975_consen 18 PLARALPDDVIGVYGIE---YPGRGDDEPPPDSIEELASRYAEAI---RARQ--PEGPYVLAGWSFGGILAFEMARQLEE 89 (229)
T ss_dssp HHHHHHTTTEEEEEEEC---STTSCTTSHEESSHHHHHHHHHHHH---HHHT--SSSSEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEEe---cCCCCCCCCCCCCHHHHHHHHHHHh---hhhC--CCCCeeehccCccHHHHHHHHHHHHH
Confidence 34444444446676633 3344322233344556665555544 3321 113899999999999999988742
Q ss_pred -CCceeEEEEeccC
Q 002164 781 -PHLFCCGIARSGA 793 (958)
Q Consensus 781 -p~~~~a~v~~~~~ 793 (958)
...+..++++.+.
T Consensus 90 ~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 90 AGEEVSRLILIDSP 103 (229)
T ss_dssp TT-SESEEEEESCS
T ss_pred hhhccCceEEecCC
Confidence 2447778777743
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.17 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=26.7
Q ss_pred cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 328 IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 328 l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
|.-+.....+.+||||++++.+... ...+.++|++.
T Consensus 317 IPVGKsPHGV~vSPDGkylyVankl------------S~tVSVIDv~k 352 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIANGKL------------SPTVTVIDVRK 352 (635)
T ss_pred EECCCCccceEECCCCCEEEEeCCC------------CCcEEEEEChh
Confidence 3333556788999999999988744 34788888874
No 361
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.27 E-value=0.0047 Score=64.09 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=79.2
Q ss_pred eeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 367 QVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 367 ~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
.|||||+..-+ ...|...+.. ..+...++.++++.+++|-.. ...+.|+++|+ .+-
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n----------~~gl~AlS~n~~n~ylAyp~s-----------~t~GdV~l~d~--~nl 163 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPN----------PKGLCALSPNNANCYLAYPGS-----------TTSGDVVLFDT--INL 163 (391)
T ss_pred cEEEEecccceeehhhhccCCC----------ccceEeeccCCCCceEEecCC-----------CCCceEEEEEc--ccc
Confidence 79999997532 2222222111 123444555566668888311 12457899986 333
Q ss_pred CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC--CccccCCCCCCceEeccCCce
Q 002164 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTY 523 (958)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdG~~ 523 (958)
.....+..+++.+..++|++||..|+.+++.++ -|.++....+ +....+.+. ...+|+ ++|+||+++
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGT---VIRVf~v~~G--~kl~eFRRG~~~~~IyS------L~Fs~ds~~ 232 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGT---VIRVFSVPEG--QKLYEFRRGTYPVSIYS------LSFSPDSQF 232 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCce---EEEEEEcCCc--cEeeeeeCCceeeEEEE------EEECCCCCe
Confidence 345566778888889999999999998876664 4555665554 323333332 233455 889999999
Q ss_pred EEEEe
Q 002164 524 VIAKI 528 (958)
Q Consensus 524 l~~~~ 528 (958)
|...+
T Consensus 233 L~~sS 237 (391)
T KOG2110|consen 233 LAASS 237 (391)
T ss_pred EEEec
Confidence 88776
No 362
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.27 E-value=0.0034 Score=64.73 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCccccccccc
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+...+.+.-+ ..+..+.|+|--..|+.+.. .++.|.|||+..+. .+.+... .
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~------------sDrsIvLyD~R~~~Pl~KVi~~--------------m 230 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCA------------SDRSIVLYDLRQASPLKKVILT--------------M 230 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeec------------cCCceEEEecccCCccceeeee--------------c
Confidence 4444555544 56778889998777766552 24489999998443 3333221 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
....+.|+| ....|.+ .+++..+|.+|.-.+ ..+..+ .++-..+..+.|||-|+.++..+-+.+
T Consensus 231 RTN~IswnP--eafnF~~-----------a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 231 RTNTICWNP--EAFNFVA-----------ANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cccceecCc--cccceee-----------ccccccceehhhhhh--cccchhhcccceeEEEeccCCCcchhccccccce
Confidence 224689999 3333421 244557898885111 122222 233345678999999999998876665
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+||-++ .+. ....-.......++. +.||-|.++|+.++
T Consensus 296 --IRIf~~~--~~~-SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 296 --IRIFPVN--HGH-SRDIYHTKRMQHVFC------VKYSMDSKYIISGS 334 (433)
T ss_pred --EEEeecC--CCc-chhhhhHhhhheeeE------EEEeccccEEEecC
Confidence 5565544 321 111111222233333 78999999998776
No 363
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.27 E-value=0.0021 Score=73.15 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCCceecCCCCEEEEEecC---------CCCCchhc---ccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRR---------ALPPLEEL---ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
...++.+|+-|.+....... +......+ ..+...+.++.+|.-.......+.++-+..|+.+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~----- 524 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK----- 524 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-----
Confidence 56788999999987664432 11111122 12233444555554443333334445677777733
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
...+..+.-+..+..+..+-....++.. -+...|.++|+.+-+..+...+...+ +..+.|||||+|
T Consensus 525 -k~l~~~l~l~~~~~~iv~hr~s~l~a~~---------~ddf~I~vvD~~t~kvvR~f~gh~nr----itd~~FS~DgrW 590 (910)
T KOG1539|consen 525 -KVLKKSLRLGSSITGIVYHRVSDLLAIA---------LDDFSIRVVDVVTRKVVREFWGHGNR----ITDMTFSPDGRW 590 (910)
T ss_pred -cceeeeeccCCCcceeeeeehhhhhhhh---------cCceeEEEEEchhhhhhHHhhccccc----eeeeEeCCCCcE
Confidence 1122222222244555555555555543 24778999998887666555544444 789999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCcccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~ 335 (958)
|+.+. ..+.|.++|+ +|..- -+.-+....
T Consensus 591 lisas-------------------------------------------------mD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 591 LISAS-------------------------------------------------MDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred EEEee-------------------------------------------------cCCcEEEEeccCcceeeeEecCCcce
Confidence 99771 2345778888 77432 222224567
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
++.+||+|.+||.+..+. ..|++|.-.
T Consensus 622 sls~SPngD~LAT~Hvd~------------~gIylWsNk 648 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQ------------NGIYLWSNK 648 (910)
T ss_pred eeEECCCCCEEEEEEecC------------ceEEEEEch
Confidence 889999999999988552 378888543
No 364
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0024 Score=75.46 Aligned_cols=170 Identities=12% Similarity=0.148 Sum_probs=95.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+....|+|.+.-++.+... .++|+|||++.-+ ...+.. . + .....+..++|...-+
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~---~-~-----~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG---S-Q-----APPSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC---C-C-----CCcccceEeccchhhh
Confidence 677788999988844433322 3599999998411 111110 0 0 0113455677776555
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCce-EEEEEeccc-cceEEEEEc
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLA-LVYESWYKT-RRTRTWVIS 487 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~-l~~~~~~~~-~~~~l~~~~ 487 (958)
.|+.. .+..+...+||+ ...+....+.... ..+..+.|.||... |+.+++++. ....+|.+.
T Consensus 175 hILAS------------~s~sg~~~iWDl--r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 175 HILAS------------GSPSGRAVIWDL--RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred HHhhc------------cCCCCCceeccc--cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 55442 134556777886 2222333443332 34678999999755 444444443 335556544
Q ss_pred CCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEE
Q 002164 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~ 566 (958)
-.+ .+..+...+...+.+ ++|.+.+..++.... ...++..||.++|++.-
T Consensus 241 ~as---sP~k~~~~H~~Gils------lsWc~~D~~lllSsg--------------------kD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 241 FAS---SPLKILEGHQRGILS------LSWCPQDPRLLLSSG--------------------KDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ccC---Cchhhhcccccceee------eccCCCCchhhhccc--------------------CCCCeeEecCCCceEee
Confidence 433 334444444444444 789998866555541 12368899999987643
No 365
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.24 E-value=0.04 Score=57.54 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe-cCCe-E-EEEEec
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNST-L-LVCTIP 263 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG~-~-l~~~~~ 263 (958)
+...++.+.-+ +++|+... +.+.+.+|+.+|....++....+. +..++|- +|.. . ++.+
T Consensus 104 hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsa-- 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSA-- 165 (423)
T ss_pred chhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEe--
Confidence 33466666666 78998844 466788889887766666554443 6778886 3332 2 3322
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC--ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP--AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~--~~~~~~~ 338 (958)
+.+ ..-.||.++. .-. ......+ ..+.+++
T Consensus 166 -------------------s~D--------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 166 -------------------SMD--------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred -------------------cCC--------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 110 2344666665 221 1222223 6678888
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccC------------CccccCcc-cccccccCcceee
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL------------PLAEDIPI-AFNSVRKGMRSIN 405 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~------------~~~~~~p~-~~~~~~~~~~~~~ 405 (958)
..+||.++.-.+- +..+-+|+........+... ......|. ...++...+.++.
T Consensus 201 v~~sgtr~~SgS~-------------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 201 VDSSGTRFCSGSW-------------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ecCCCCeEEeecc-------------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 8999999887763 34777887332211111110 01111222 3344556678899
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
|++ ...+|. .+-+..|.+||+ ..|+....++ .+.....+..+|..+.|+..+.+. .|.+
T Consensus 268 w~d--~~v~yS------------~SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr----~irl 326 (423)
T KOG0313|consen 268 WSD--ATVIYS------------VSWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR----HIRL 326 (423)
T ss_pred EcC--CCceEe------------ecccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC----ceee
Confidence 988 445553 234556889997 2344444443 334456688899888777665332 3666
Q ss_pred EcCCCCCCCcE-EEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 486 ISPGSKDVAPR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 486 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.|+..+.++.. +.+-.+...+.+ +.|+|...+++...
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 67776644432 334444445444 78999988776665
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.071 Score=53.82 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=68.4
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..-.|||||++|+.+.++-. ...+-|-+||.+.+ ..++-..+.. ..++..+.|.+||+.
T Consensus 115 fyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~~-fqrvgE~~t~----------GiGpHev~lm~DGrt 175 (366)
T COG3490 115 FYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDAREG-FQRVGEFSTH----------GIGPHEVTLMADGRT 175 (366)
T ss_pred eecccccCCCCcEEEeecCCCC--------CCCceEEEEecccc-cceecccccC----------CcCcceeEEecCCcE
Confidence 3456689999999998876531 12456888888733 3333333222 246678999999999
Q ss_pred ceEE---EEec-cCCCccccc-ccCCeEEEEeCCCCCCCCceEEE----eeccccCceeeecCCceEEEEEeccc
Q 002164 413 TLYW---AETQ-DGGDAKVEV-TPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 413 l~~~---~~~~-~~~~~~~~~-~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++.. ++.. +-+....+. +..-.+.+++. .+|.-.++.+ .....++.+...+||+ |+|.+.+.+
T Consensus 176 lvvanGGIethpdfgR~~lNldsMePSlvlld~--atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G 247 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDA--ATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG 247 (366)
T ss_pred EEEeCCceecccccCccccchhhcCccEEEEec--cccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC
Confidence 9874 1111 111111111 12234666663 3454333332 1223455567777875 566665444
No 367
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.24 E-value=0.028 Score=66.47 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=81.2
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
.+|+|.... .++|.+.|.+|...+.+ .... ..+-.+.|||||+.|+|-+....
T Consensus 319 tkiAfv~~~------------~~~L~~~D~dG~n~~~ve~~~~-------------~~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDV------------TGNLAYIDYTKGASRAVEIEDT-------------ISVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcC------------CCeEEEEecCCCCceEEEecCC-------------CceecCcCCCCCCEEEEEEeecC-
Confidence 367777632 23899999998887776 3322 22356889999999999433221
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce-EEEEEecccc-------ceEEEEEcCCCCC-C
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKTR-------RTRTWVISPGSKD-V 493 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~~-------~~~l~~~~~~~~~-~ 493 (958)
+..+..||+.++. .++..+.+|.-.+..+..-...+.|.. |+|.++.+++ ....|++....|+ +
T Consensus 373 ------~~g~s~vYv~~L~-t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNLN-ASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEehh-ccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 1235569999972 345555666555555555555677654 7787743331 2457888876553 5
Q ss_pred CcEEEeccCCcc
Q 002164 494 APRILFDRSSED 505 (958)
Q Consensus 494 ~~~~~~~~~~~~ 505 (958)
+++.+++.....
T Consensus 446 ~p~kl~dga~hg 457 (912)
T TIGR02171 446 TPKKLFDGAYHG 457 (912)
T ss_pred Cchhhhcccccc
Confidence 677777776544
No 368
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.23 E-value=0.13 Score=58.60 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce--eeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~--~~lt~~~~ 187 (958)
.+...++|||++.+|++.+. .++.. -+|.+.++.+ +.. ..++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~------y~lr~kdL~t----g~~~~d~i~---- 173 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQ------YTLRFKDLAT----GEELPDEIT---- 173 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccE------EEEEEEeccc----ccccchhhc----
Confidence 35678899999999999873 33333 3788999865 332 1121
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--CceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.....+|.+|++.+.|++..+ ......||...+.+ .+.+.+...++..+ +-++.=|...++|++.
T Consensus 174 -~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 174 -NTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred -ccccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 1356789999999999988533 23456788888776 44454554444321 2244445566666655
No 369
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.23 E-value=0.037 Score=58.02 Aligned_cols=138 Identities=10% Similarity=0.024 Sum_probs=79.9
Q ss_pred cceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEec-cCCcccc
Q 002164 313 TTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAED 389 (958)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~-~~~~~~~ 389 (958)
...+.++++ +|+ ...|..++.+.++.|+-||..|+.+..+ .+|.+||..++++..-. .+.+
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~v~e~~~heG--- 216 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTVVSEGVAHEG--- 216 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcEeeecccccC---
Confidence 456778888 774 4456644888999999999999988744 48999999866543221 1111
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCC
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDS 467 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg 467 (958)
.......|-.||+ ++++-+. .-...++-+|+.++++ ++..+.. ....+-.|.|.||.
T Consensus 217 ---------~k~~Raifl~~g~--i~tTGfs--------r~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 217 ---------AKPARAIFLASGK--IFTTGFS--------RMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred ---------CCcceeEEeccCc--eeeeccc--------cccccceeccCccccc--CcceeEEeccCCceEEeeecCCC
Confidence 1224567888887 3332211 1123356777753332 2222222 22234457787776
Q ss_pred ceEEEEEeccccceEEEEEcC
Q 002164 468 LALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+.| |....+..+.+.|-+..
T Consensus 276 ~iv-Yl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 276 SIV-YLCGKGDSSIRYFEITN 295 (472)
T ss_pred CEE-EEEecCCcceEEEEecC
Confidence 654 44444444455565543
No 370
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.22 E-value=0.012 Score=63.11 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=88.5
Q ss_pred ceEEEEEc-CC-eeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc
Q 002164 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~ 389 (958)
+.|.+..+ ++ +...++.+ ..+..+.+||-.|+++.+..+ .+.+.+||+.|..+.--.. .
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~~~--~--- 205 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFHAS--E--- 205 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc------------CCeEEEEeccCCCcccchh--h---
Confidence 34666666 55 34455544 445678899999998888754 3589999999754322111 0
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
.+..-.+++.|||-...|++. ++.+..|+++|. .......-...+.....++|+++|.+
T Consensus 206 ------~HsAP~~gicfspsne~l~vs------------VG~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 206 ------AHSAPCRGICFSPSNEALLVS------------VGYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred ------hccCCcCcceecCCccceEEE------------ecccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 111223679999999888775 355668999995 32222222234556778999999988
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 002164 470 LVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
|+.... +.+|+.+|+.+.
T Consensus 265 L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGNS----KGELIAYDMRST 282 (673)
T ss_pred EEeecC----CceEEEEecccC
Confidence 877642 256999998875
No 371
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.0043 Score=70.19 Aligned_cols=183 Identities=12% Similarity=0.105 Sum_probs=110.6
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|-+||++-. ....+++.+.+.. .+....|++---.|+.+.. ...-|-.||+...+....+....+.
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--------QDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS--------QDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC--------CCceEEEEeeecccccccccccchh
Confidence 57889999432 2234444344333 7888899987778877543 3445566666655555555443332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+.+++|+|--...|++..+. +.-|+|-+..
T Consensus 179 ----iRDV~fsp~~~~~F~s~~ds----------------------------------------------G~lqlWDlRq 208 (839)
T KOG0269|consen 179 ----IRDVKFSPGYGNKFASIHDS----------------------------------------------GYLQLWDLRQ 208 (839)
T ss_pred ----hhceeeccCCCceEEEecCC----------------------------------------------ceEEEeeccC
Confidence 77999997554444441110 2334444443
Q ss_pred -CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+.-..+++.+ +.+.-..|+|++.+||.... ++.+.||+..+...+.+..... . .
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------------DK~vkiWd~t~~~~~~~~tInT--i---------a 264 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------------DKMVKIWDMTDSRAKPKHTINT--I---------A 264 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCC-------------CccEEEEeccCCCccceeEEee--c---------c
Confidence 3345566666 77889999999999997763 3489999998655444322110 0 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
-+..+.|.|+-+..+-.... .....|++||+
T Consensus 265 pv~rVkWRP~~~~hLAtcsm----------v~dtsV~VWDv 295 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATCSM----------VVDTSVHVWDV 295 (839)
T ss_pred eeeeeeeccCccchhhhhhc----------cccceEEEEee
Confidence 23578899998865543111 23446888886
No 372
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.21 E-value=0.018 Score=61.40 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=132.8
Q ss_pred cCCCCEEEEEecC--CCCCchhcccccceeeceeecCCC-------CC-ccceeeEeceeEEEccCCCCC----Cceeee
Q 002164 117 SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRIDGKC-------NT-RSRMSFYTGIGIHQLFPDGKL----GQEIEI 182 (958)
Q Consensus 117 SPDG~~laf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~l~i~~~~~dg~~----~~~~~l 182 (958)
+|.|.-.+|-... +.+....-.+|+++|.+..-++.+ .+ ....+.+..+-+|+++..+.. .+..-+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 7888888886553 333333345566666554432211 11 112223367889999654431 122222
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--CceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
++ +...+...+|.|-.+.++-.. .....|.++|+.+ .++......... .+..++|.|-+..|+.
T Consensus 224 ~~--h~~~VeDV~~h~~h~~lF~sv--------~dd~~L~iwD~R~~~~~~~~~~~ah~~----~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SG--HEDVVEDVAWHPLHEDLFGSV--------GDDGKLMIWDTRSNTSKPSHSVKAHSA----EVNCVAFNPFNEFILA 289 (422)
T ss_pred ec--CCcceehhhccccchhhheee--------cCCCeEEEEEcCCCCCCCcccccccCC----ceeEEEeCCCCCceEE
Confidence 33 334788999999666554332 1366788888874 333333322222 2778999987766665
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C--CeeeecCCC-ccccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D--GTVKEIGPP-AVYTS 336 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~--g~~~~l~~~-~~~~~ 336 (958)
+. + ..+.|.++|+ + .....+... ..+..
T Consensus 290 T~--------------------S----------------------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 290 TG--------------------S----------------------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred ec--------------------c----------------------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence 51 0 1234566665 3 334444444 77889
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc---cccccccCcceeeeecCCCCc
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI---AFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~---~~~~~~~~~~~~~~spDG~~l 413 (958)
+.|||+-+.|+.++. .++.+.+||+..-..++.. ....+..|- -=.++...+..+.|.|.-.++
T Consensus 322 V~WSPh~etvLASSg------------~D~rl~vWDls~ig~eq~~-eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 322 VEWSPHNETVLASSG------------TDRRLNVWDLSRIGEEQSP-EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred EEeCCCCCceeEecc------------cCCcEEEEeccccccccCh-hhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence 999999998888773 3458999999732111110 001111111 112334456789999999888
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeC
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
+..+ .+.+.+.+|..
T Consensus 389 I~Sv------------aeDN~LqIW~~ 403 (422)
T KOG0264|consen 389 IASV------------AEDNILQIWQM 403 (422)
T ss_pred EEEe------------cCCceEEEeec
Confidence 8752 44566777763
No 373
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.20 E-value=0.086 Score=53.51 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l 234 (958)
.-...+||||+..|||+.. .+.|.++|+.|.+...+
T Consensus 45 QWRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 3456789999999999764 66888889888665544
No 374
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.20 E-value=0.038 Score=55.66 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=124.5
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC-----eEEEEEeeccccCCCCCceEEEEEcCCCceee---cc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~-----~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---lt 235 (958)
.|.|..+..++ ++......+..........|.||.+ .||.+ +....||++..+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs---------~D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS---------SDFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhcc---------cCeEEEEeccCcCCceehhhhhc
Confidence 45566664433 3322222122223567788999985 34443 235678887765444322 22
Q ss_pred CCCCccccccccceEEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
...+..+.+.+.++.|. -|-++|..++-+ .+=
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSiD-----------------------------------------------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSID-----------------------------------------------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeeccc-----------------------------------------------CeE
Confidence 22333345567789998 456666655211 122
Q ss_pred eEEEEEc--CC--eeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 315 ~l~~~~~--~g--~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
.||-+.. .| +.+.|.....+..++|+.+|..++.+- . .++.+.++|+...+...|.-.+....
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv-g-----------aDGSvRmFDLR~leHSTIIYE~p~~~- 242 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV-G-----------ADGSVRMFDLRSLEHSTIIYEDPSPS- 242 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe-c-----------CCCcEEEEEecccccceEEecCCCCC-
Confidence 3444443 22 344455557888999999887766554 2 24588899988665544432111111
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceE
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (958)
...-.++|.+....+..+ . .-....|.++|+ -.-....-.|..+.+.+.+++|.|-++.-
T Consensus 243 --------~pLlRLswnkqDpnymAT--f---------~~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 243 --------TPLLRLSWNKQDPNYMAT--F---------AMDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred --------CcceeeccCcCCchHHhh--h---------hcCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 112345666544332221 1 112345666775 11223345567788889999999998776
Q ss_pred EEEEeccccceEEEEEc
Q 002164 471 VYESWYKTRRTRTWVIS 487 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~ 487 (958)
+.+..++- +.-+|.++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 66655442 23345443
No 375
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.19 E-value=0.11 Score=53.97 Aligned_cols=241 Identities=14% Similarity=0.047 Sum_probs=134.0
Q ss_pred hcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccC
Q 002164 136 ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS 214 (958)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~ 214 (958)
.+.++-.++..+.++|.......++.+..+.|||+.+ ++ ...|+++- ..+..+++|+---+++-+.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----g~LkltltGhi--~~vr~vavS~rHpYlFs~g------- 212 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----GQLKLTLTGHI--ETVRGVAVSKRHPYLFSAG------- 212 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----CeEEEeecchh--heeeeeeecccCceEEEec-------
Confidence 3444556667777777766666666668899999966 43 23344432 3678889998666554432
Q ss_pred CCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccch
Q 002164 215 SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (958)
Q Consensus 215 ~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 294 (958)
+..+|--||++..+..+-..+.-.. +..++..|--+.|+...
T Consensus 213 --edk~VKCwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~g-------------------------------- 254 (460)
T KOG0285|consen 213 --EDKQVKCWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTGG-------------------------------- 254 (460)
T ss_pred --CCCeeEEEechhhhhHHHhccccce----eEEEeccccceeEEecC--------------------------------
Confidence 4668899999887766554433222 44555667777777541
Q ss_pred hhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 295 ~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
..+.+-++|+ +. .+..+... ..+.++.+.|-.-.|+..+. +..|.+|
T Consensus 255 -----------------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-------------D~tvrlW 304 (460)
T KOG0285|consen 255 -----------------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-------------DSTVRLW 304 (460)
T ss_pred -----------------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-------------CceEEEe
Confidence 1122334444 43 33444433 55666666664444555542 4489999
Q ss_pred ecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 372 TTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 372 d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
|+. |+....++.+. ..++.+...|+-..++- ...+.+--|++ ..|.-...
T Consensus 305 Dl~agkt~~tlt~hk-------------ksvral~lhP~e~~fAS--------------as~dnik~w~~--p~g~f~~n 355 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHK-------------KSVRALCLHPKENLFAS--------------ASPDNIKQWKL--PEGEFLQN 355 (460)
T ss_pred eeccCceeEeeeccc-------------ceeeEEecCCchhhhhc--------------cCCccceeccC--Cccchhhc
Confidence 998 66666777653 23355556665433322 22334444554 23433333
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+......+..++-..||- +++ .. .+..++..|..++
T Consensus 356 lsgh~~iintl~~nsD~v--~~~-G~--dng~~~fwdwksg 391 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDGV--LVS-GG--DNGSIMFWDWKSG 391 (460)
T ss_pred cccccceeeeeeeccCce--EEE-cC--CceEEEEEecCcC
Confidence 444444445555555552 222 21 2245777776664
No 376
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.14 E-value=0.38 Score=49.04 Aligned_cols=122 Identities=16% Similarity=0.296 Sum_probs=73.4
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee--ccCCCCccccccccceEEecCCeE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~--lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
..++..|+ ..++..+|||..+.++-... -++...+|.+... |.... ....+ +.+-.++|+.||..
T Consensus 20 ~ev~~pP~-DsIS~l~FSP~~~~~~~A~S------WD~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 20 YEVPNPPE-DSISALAFSPQADNLLAAGS------WDGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGSK 86 (347)
T ss_pred eecCCCcc-cchheeEeccccCceEEecc------cCCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCce
Confidence 34443332 36899999995544443322 3344555555433 33221 11222 22668999999988
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~ 335 (958)
++... ...++-++|+ +|+..++..+ +.+.
T Consensus 87 Vf~g~-------------------------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 87 VFSGG-------------------------------------------------CDKQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred EEeec-------------------------------------------------cCCceEEEEccCCCeeeeeeccccee
Confidence 88651 2345667888 8888888776 6777
Q ss_pred ccccCCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCc
Q 002164 336 SLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (958)
Q Consensus 336 ~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~ 376 (958)
...|-+-.. .|+..+ ++..|..||....
T Consensus 118 t~~wv~~~~~~cl~TGS-------------WDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGS-------------WDKTLKFWDTRSS 147 (347)
T ss_pred EEEEecCCCcceeEecc-------------cccceeecccCCC
Confidence 777776555 333332 4668999998743
No 377
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.12 E-value=0.013 Score=69.93 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=71.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+..+|+|+.++|..+..+.........+|+.+... .+.++.... ...+.|+|||+.+++......
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~--- 82 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGG--- 82 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCC---
Confidence 466788899999999988653344455667889876544 334443333 558899999999999831000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (958)
...++|+++.+| .+... ..+....|+|+|+.+++
T Consensus 83 ------------------------------------------~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 83 ------------------------------------------RVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ------------------------------------------CcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence 135688888754 22222 56678899999999999
Q ss_pred E
Q 002164 349 S 349 (958)
Q Consensus 349 ~ 349 (958)
.
T Consensus 118 ~ 118 (620)
T COG1506 118 L 118 (620)
T ss_pred E
Confidence 4
No 378
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.048 Score=53.61 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc---eEEEeccCCccccCcccccccccCcceeeeec
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~---~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
..+.+++|.|.+--+...... .+++|.+.+.++. ....+ +..+..|+.++.|.|
T Consensus 103 ~SVNsV~wapheygl~Lacas-----------SDG~vsvl~~~~~g~w~t~ki------------~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACAS-----------SDGKVSVLTYDSSGGWTTSKI------------VFAHEIGVNSVSWAP 159 (299)
T ss_pred ccceeecccccccceEEEEee-----------CCCcEEEEEEcCCCCccchhh------------hhccccccceeeecC
Confidence 667888898876644333211 2347777766532 11111 112336778899998
Q ss_pred C---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC---CceEEEeeccccCceeeecCC----ceEEEEEeccc
Q 002164 409 D---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE---GPEILHKLDLRYGGISWCDDS----LALVYESWYKT 478 (958)
Q Consensus 409 D---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~---~~~~l~~~~~~~~~~~~spDg----~~l~~~~~~~~ 478 (958)
- |..+-- ...+.-...+..+.++.+-+|+. +.+ ..+.|..+...++.++|+|.- .+|+..+.++.
T Consensus 160 a~~~g~~~~~--~~~~~~krlvSgGcDn~VkiW~~---~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 160 ASAPGSLVDQ--GPAAKVKRLVSGGCDNLVKIWKF---DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred cCCCcccccc--CcccccceeeccCCccceeeeec---CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 6 421100 00000000111233445566664 221 223356666778899999973 23444443332
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.-||..+.+...-+.+++.+ ....++. ++||..|..|+...
T Consensus 235 --viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 235 --VIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred --EEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 66888775543223333332 2333444 89999999887664
No 379
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.10 E-value=0.034 Score=56.68 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=51.5
Q ss_pred eceeEEEccCCCCCCceeeeccCC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|.+|++ +....+..+. +.+.++..+..|-|+.-+-+. +...|..||+-.|+.-.+......
T Consensus 107 G~i~iw~~------~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---------~D~~lr~WNLV~Gr~a~v~~L~~~- 170 (362)
T KOG0294|consen 107 GHIIIWRV------GSWELLKSLKAHKGQVTDLSIHPSGKLALSVG---------GDQVLRTWNLVRGRVAFVLNLKNK- 170 (362)
T ss_pred CcEEEEEc------CCeEEeeeecccccccceeEecCCCceEEEEc---------CCceeeeehhhcCccceeeccCCc-
Confidence 57888887 3333332222 223699999999886544433 355677788877765555544443
Q ss_pred ccccccceEEecCCeEEEEE
Q 002164 242 LNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (958)
...+.|+|.|.++++.
T Consensus 171 ----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 171 ----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred ----ceeeEEcCCCCEEEEE
Confidence 3468999999988877
No 380
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.08 E-value=0.0096 Score=60.79 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccCC
Q 002164 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (958)
Q Consensus 740 ~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (958)
.+-+..+++++.+.. ...+++|.++||||||.++-.++...+ +.++.+|..+.+.
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 344455566665543 356789999999999999988887543 4688888876543
No 381
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.06 E-value=0.0023 Score=71.67 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
.....|++.||.+ . .+..|.|..+.........++++.+.++.+.+... .+++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4566789999977 3 35556666655433345567778888887776522 3589999999999999999988775
Q ss_pred c----eeEEEEeccCCCC
Q 002164 783 L----FCCGIARSGAYNR 796 (958)
Q Consensus 783 ~----~~a~v~~~~~~~~ 796 (958)
. ++..|++++.+..
T Consensus 186 ~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred hHHhHhccEEEECCCCCC
Confidence 3 6888888877653
No 382
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.06 E-value=0.0076 Score=67.42 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
+..++.||+|+.||..... ..... ..|++|+... ..+...|.+ +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS----------------------~~~eh------AvI~lw~t~~---W~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS----------------------SLKEH------AVIRLWNTAN---WLQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh----------------------CCccc------eEEEEEeccc---hhhhheecc--cceE
Confidence 5578999999999987653 11111 3689998732 122333433 2237
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+...+|||||++|+-+++ +....||-.--+-....+... ......++..+.|+||++.++..
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999999873 335566654211111111111 11122347789999999997765
No 383
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.05 E-value=0.0039 Score=71.02 Aligned_cols=150 Identities=12% Similarity=0.100 Sum_probs=88.2
Q ss_pred EEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCc---HHHHHHHHCCcEEE
Q 002164 641 LIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAIL 716 (958)
Q Consensus 641 ~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~vl 716 (958)
.+.+.. ..+..+..|++...+ ++. ..|+||+++|||.++...+.....+|-....-+. .....|.+.+..++
T Consensus 51 y~~v~~~~~~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~ 126 (462)
T PTZ00472 51 YFDIPGNQTDKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIY 126 (462)
T ss_pred EEEeCCCCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEE
Confidence 344432 235678888887653 222 3799999999998876554444445443321110 01113556655555
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhC---C---C----c
Q 002164 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA---P---H----L 783 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~---p---~----~ 783 (958)
. +..-..|++..... ........+|+.++++...++ +.....++.|+|+||||..+-.+|.+- . + -
T Consensus 127 i-DqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~in 205 (462)
T PTZ00472 127 V-DQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYIN 205 (462)
T ss_pred E-eCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceee
Confidence 4 32112343332211 122356678888888766553 444557899999999999887777642 0 1 2
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
++++++..|..+
T Consensus 206 LkGi~IGNg~~d 217 (462)
T PTZ00472 206 LAGLAVGNGLTD 217 (462)
T ss_pred eEEEEEeccccC
Confidence 788888888655
No 384
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.05 E-value=0.031 Score=56.17 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=98.1
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~ 733 (958)
+|+..|+. |. .||.+-||.+.. ..|+- .+..+.+.|+++||+|++.+|.. + +...
T Consensus 8 ~wvl~P~~-------P~-gvihFiGGaf~g--------a~P~i---tYr~lLe~La~~Gy~ViAtPy~~--t----fDH~ 62 (250)
T PF07082_consen 8 SWVLIPPR-------PK-GVIHFIGGAFVG--------AAPQI---TYRYLLERLADRGYAVIATPYVV--T----FDHQ 62 (250)
T ss_pred cEEEeCCC-------CC-EEEEEcCcceec--------cCcHH---HHHHHHHHHHhCCcEEEEEecCC--C----CcHH
Confidence 46677753 22 466677765331 12221 12345677889999999965521 1 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---CCCC----C--
Q 002164 734 RFVEQLVACAEAAVEEVVRRGVAHPS--KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTPF----G-- 802 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~--~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~~----~-- 802 (958)
............+++.|.++...++. +++-+|||+|+-+-+.+....+..-++-|.++ +-|.. ..++ .
T Consensus 63 ~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 63 AIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccc
Confidence 22334455566777778776544433 68889999999999888776543334444443 11100 0000 0
Q ss_pred cc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC-CCcEEEEEeCCCCcc
Q 002164 803 FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH-GALCRLVILPFESHG 876 (958)
Q Consensus 803 ~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~ 876 (958)
+. +....+-+......+.- .+ ...|+|-=.+|. .+++..+.+.|+.+ ...++....|| .|.
T Consensus 142 l~~EF~PsP~ET~~li~~~Y------~~-~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 142 LRLEFTPSPEETRRLIRESY------QV-RRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cccCccCCHHHHHHHHHHhc------CC-ccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 00 00011111111111110 12 235666666675 47788888888865 23466777886 885
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.33 Score=54.25 Aligned_cols=208 Identities=11% Similarity=0.084 Sum_probs=117.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+++.||+-.+ -+.-+...++.. .+....|-+--+||+..+ ...+|.+++..+++...........
T Consensus 35 G~V~IWnyet-qtmVksfeV~~~----PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy- 99 (794)
T KOG0276|consen 35 GDVQIWNYET-QTMVKSFEVSEV----PVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY- 99 (794)
T ss_pred CeeEEEeccc-ceeeeeeeeccc----chhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc-
Confidence 5788998744 111122333332 477778888788888844 3678888888888766554444332
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
+..++-.|.--++..++.+ ..-.+|.++-.
T Consensus 100 ---IR~iavHPt~P~vLtsSDD-----------------------------------------------m~iKlW~we~~ 129 (794)
T KOG0276|consen 100 ---IRSIAVHPTLPYVLTSSDD-----------------------------------------------MTIKLWDWENE 129 (794)
T ss_pred ---eeeeeecCCCCeEEecCCc-----------------------------------------------cEEEEeeccCc
Confidence 5666667766665544111 12234444321
Q ss_pred CeeeecCCC--ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccc
Q 002164 323 GTVKEIGPP--AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 323 g~~~~l~~~--~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~ 398 (958)
=...+..++ -.+..++|.| |-..++..+. ++++-+|.+....+ ..|. ++.
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL-------------DrTVKVWslgs~~~nfTl~-------------gHe 183 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASL-------------DRTVKVWSLGSPHPNFTLE-------------GHE 183 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeec-------------cccEEEEEcCCCCCceeee-------------ccc
Confidence 134444444 5677889999 5666666653 34888998863321 2222 333
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEE
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
.|+..+.|-+-|.+=+..+- +.+..+-+||. .+....+.|..+...++.+.|.|.=-.|+..+
T Consensus 184 kGVN~Vdyy~~gdkpylIsg-----------aDD~tiKvWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISG-----------ADDLTIKVWDY--QTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred cCcceEEeccCCCcceEEec-----------CCCceEEEeec--chHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 56666667665544443211 22335677875 22234566666666677777766654444444
No 386
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.99 E-value=0.0045 Score=70.74 Aligned_cols=88 Identities=23% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHH-CCcEEEEcCCCCCCCCCCcccch---------hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 002164 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 705 ~~~la~-~G~~vl~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~av~~l~~~~-~~d~~~i~l~G~S~GG~~a 773 (958)
...||+ .|-.++. .-.+-||.+.... -..++.++|+...++++.++. ..+..+++++|.||||.||
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 345665 4666666 4455677774321 115688999999999999753 3445699999999999999
Q ss_pred HHHHHhCCCceeEEEEeccCCC
Q 002164 774 ANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+++-.++|+.|.|+++.+++..
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999988654
No 387
>COG3150 Predicted esterase [General function prediction only]
Probab=96.98 E-value=0.0086 Score=55.35 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccc-----h
Q 002164 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDR-----T 809 (958)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~-----~ 809 (958)
......+.++.+|..+ .| ...+|+|-|.||+.|.+++.+. -+++++. +|..-.....-++..... .
T Consensus 41 ~p~~a~~ele~~i~~~-----~~-~~p~ivGssLGGY~At~l~~~~--Girav~~-NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQEL-----GD-ESPLIVGSSLGGYYATWLGFLC--GIRAVVF-NPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHc-----CC-CCceEEeecchHHHHHHHHHHh--CChhhhc-CCCcCchhhhhhhcCCCCCCCCcc
Confidence 3455566666655432 22 2489999999999999999887 3555543 333221111111111000 0
Q ss_pred hh-hcHHHHHhcCcccccCCCCCC-EEEEee-CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 810 LW-EATSTYVEMSPFMSANKLKKP-ILLVHG-EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 810 ~~-~~~~~~~~~sp~~~~~~~~~P-~Lii~G-~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
-| -........ -...+..++.| .|++-. +.|.+.. ..++.+.+...+ ..+..|.+|.|.+ ....
T Consensus 112 ~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---hHHh
Confidence 01 000101110 11223334443 444444 4488877 777777766554 3467888999854 4566
Q ss_pred HHHHHHHHH
Q 002164 887 LWETDRWLQ 895 (958)
Q Consensus 887 ~~~i~~fl~ 895 (958)
++.|..|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 788888853
No 388
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=96.98 E-value=0.068 Score=61.01 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=62.5
Q ss_pred HHHHCCcEEEEcCCCCCCCCC----Cccc-----chhhHHHHHHHHHHHHHHHHHcCC-CCCCcEEEEEeChHHHHHHHH
Q 002164 707 LWLARGFAILGGPTTPIIGEG----DEEA-----NDRFVEQLVACAEAAVEEVVRRGV-AHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 707 ~la~~G~~vl~~~~~~~~G~G----~~~~-----~~~~~~~~~~D~~~av~~l~~~~~-~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.-+++||+++.-|. |..+.. .++. ..+|....+.+...+.+.|.+..+ ..+++-...|-|-||-.++.+
T Consensus 54 ~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 54 TALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 34689999998433 222221 1122 134445567777777788887643 567899999999999999999
Q ss_pred HHhCCCceeEEEEecc
Q 002164 777 LAHAPHLFCCGIARSG 792 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~ 792 (958)
|-++|+.|.++++.+|
T Consensus 133 AQryP~dfDGIlAgaP 148 (474)
T PF07519_consen 133 AQRYPEDFDGILAGAP 148 (474)
T ss_pred HHhChhhcCeEEeCCc
Confidence 9999999999999887
No 389
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=96.96 E-value=0.028 Score=58.43 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=56.2
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
..++|.|.+.+++|.+++ .+..+++.+..++.|.+++...+.+..|.-....+.+++.+.+.+|
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 345899999999999999 9999999999999999999999999999876667777887777766
No 390
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.94 E-value=0.046 Score=54.96 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=69.3
Q ss_pred cccccccCC--CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 VYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 ~~~~~~~Sp--DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.+++-.||| ||..++.+.. ++++-||+.+... ...... .....++++.|.|+-
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d--------------~tl~~~D~RT~~~--~~sI~d---------AHgq~vrdlDfNpnk 226 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSD--------------STLQFWDLRTMKK--NNSIED---------AHGQRVRDLDFNPNK 226 (370)
T ss_pred eecccccCCCCccceEEEeCC--------------CcEEEEEccchhh--hcchhh---------hhcceeeeccCCCCc
Confidence 456778999 9999998873 3889999874221 111110 111345788899998
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-CceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
+.++.. .+..+.|.+||. ...+ ..+.+..+...+..+.|.|.-..|+.+...+
T Consensus 227 q~~lvt------------~gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 227 QHILVT------------CGDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred eEEEEE------------cCCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 887774 244556888885 2222 3345566667778888999877777775544
No 391
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=96.88 E-value=0.27 Score=49.79 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred EEEEEc-CCeee-ecCCCccccccccCCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 316 LVLVSL-DGTVK-EIGPPAVYTSLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 316 l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
|-++|. +-+.. .+.-++.+++-+|||=.- .|+.+..+. .+|.+.|++.+.......
T Consensus 126 lKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~------------~~VrLCDi~SGs~sH~Ls-------- 185 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD------------VQVRLCDIASGSFSHTLS-------- 185 (397)
T ss_pred EEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCC------------CcEEEEeccCCcceeeec--------
Confidence 445554 33322 222236677888998443 343333332 389999999665433222
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCC----------CCCCCceEE---Eeecccc
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP----------VQGEGPEIL---HKLDLRY 458 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~g~~~~~l---~~~~~~~ 458 (958)
++..++-.+.|||...++++.. +.++.+.+||+-. -+++.+..+ +...+.+
T Consensus 186 ----GHr~~vlaV~Wsp~~e~vLatg------------saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 186 ----GHRDGVLAVEWSPSSEWVLATG------------SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred ----cccCceEEEEeccCceeEEEec------------CCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 2336678899999999888751 2334455555411 122222112 2345567
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEc
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
.+++|+.||++++...-++ +.++|...
T Consensus 250 ngla~tSd~~~l~~~gtd~--r~r~wn~~ 276 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDD--RIRVWNME 276 (397)
T ss_pred eeeeecccchhhhhccCcc--ceEEeecc
Confidence 8899999999987654332 25566543
No 392
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.86 E-value=0.018 Score=64.65 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=74.6
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC-ccccCcccccccccCcceeeeecCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
-.++++..|..|+++..-.+ .+|.|+++..++.+...... ..+..+ -.+...|.|-
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD-------------rnirif~i~sgKq~k~FKgs~~~eG~l----------IKv~lDPSgi 654 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD-------------RNIRIFDIESGKQVKSFKGSRDHEGDL----------IKVILDPSGI 654 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc-------------cceEEEeccccceeeeecccccCCCce----------EEEEECCCcc
Confidence 45677788899999888754 38999999965544433322 222222 2355666666
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|+.. -.+..|-++|. ..|.-..+.+.+...+.++.|++|=|.|+..+.++= .-+|++..
T Consensus 655 Y~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred EEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 55543 12335677775 456666677778888899999999999987764432 44565554
No 393
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=96.85 E-value=0.044 Score=55.22 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=93.8
Q ss_pred cceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC-eEEEEEeeccccCCCCCceEEEEEcCCCceeecc
Q 002164 157 SRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235 (958)
Q Consensus 157 ~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt 235 (958)
...+++..|.+||.++ -+..-. +.-.+.+..-+|||=.. +-+... +....+|.+.|+++|......
T Consensus 118 tssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred ecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCcceeee
Confidence 3345667899999865 222211 22224678888999654 333333 223678999999999877665
Q ss_pred CCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcce
Q 002164 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~ 315 (958)
.+.... +-.+.|||-.+++.++....+. .+.|+- |+ ..+-
T Consensus 185 sGHr~~----vlaV~Wsp~~e~vLatgsaDg~-----------irlWDi--------Rr-----------------asgc 224 (397)
T KOG4283|consen 185 SGHRDG----VLAVEWSPSSEWVLATGSADGA-----------IRLWDI--------RR-----------------ASGC 224 (397)
T ss_pred ccccCc----eEEEEeccCceeEEEecCCCce-----------EEEEEe--------ec-----------------ccce
Confidence 554443 7789999999999987211111 011111 10 1133
Q ss_pred EEEEEc-CCeeeecCC----C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce
Q 002164 316 LVLVSL-DGTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (958)
Q Consensus 316 l~~~~~-~g~~~~l~~----~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~ 377 (958)
+..+|. +++.-++.. . +.+...+|+.||++++....+ ..+.+|+...+.
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGR 279 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCc
Confidence 455666 443222221 1 667889999999999877643 378889887543
No 394
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.85 E-value=0.089 Score=55.32 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=63.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..+.|.|--.-+++++.. +..+.+|++.+++. ..|. ++ .-+.++.|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 456778999988888777632 45899999997653 3333 32 445789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYE 473 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~ 473 (958)
..++-. ..+..|.+||. ..|.....-..+.+ ......|-.+|+ |+.+
T Consensus 186 s~l~Tt-------------ckDKkvRv~dp--r~~~~v~e~~~heG~k~~Raifl~~g~-i~tT 233 (472)
T KOG0303|consen 186 SLLCTT-------------CKDKKVRVIDP--RRGTVVSEGVAHEGAKPARAIFLASGK-IFTT 233 (472)
T ss_pred ceeeee-------------cccceeEEEcC--CCCcEeeecccccCCCcceeEEeccCc-eeee
Confidence 988763 33446888873 33322222212222 334578888988 4444
No 395
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.81 E-value=0.0045 Score=63.85 Aligned_cols=172 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+|-|||..-+ .+.+.++ -+. .+....++|--..|+-+.. ....|+++|+..+.+.+-....- .
T Consensus 168 ~i~IWD~~R~---~Pv~sms---wG~Dti~svkfNpvETsILas~~--------sDrsIvLyD~R~~~Pl~KVi~~m-R- 231 (433)
T KOG0268|consen 168 QIDIWDEQRD---NPVSSMS---WGADSISSVKFNPVETSILASCA--------SDRSIVLYDLRQASPLKKVILTM-R- 231 (433)
T ss_pred eeeecccccC---Cccceee---cCCCceeEEecCCCcchheeeec--------cCCceEEEecccCCccceeeeec-c-
Confidence 5778887432 2333332 222 6788899998887776542 35688999987765532211111 1
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|.+ ..|.+ . + ....||.+|.
T Consensus 232 ---TN~IswnPea-fnF~~-a-------------------------------------~----------ED~nlY~~DmR 259 (433)
T KOG0268|consen 232 ---TNTICWNPEA-FNFVA-A-------------------------------------N----------EDHNLYTYDMR 259 (433)
T ss_pred ---ccceecCccc-cceee-c-------------------------------------c----------ccccceehhhh
Confidence 3478999944 23322 1 1 1245888876
Q ss_pred C-CeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccc
Q 002164 322 D-GTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 322 ~-g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~ 398 (958)
. .....+..+ ..+.+++|||-|+-++..+ ++..|.|+.++.+.-+.+..... .
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs-------------yDksIRIf~~~~~~SRdiYhtkR-----------M 315 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS-------------YDKSIRIFPVNHGHSRDIYHTKR-----------M 315 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhcccc-------------ccceEEEeecCCCcchhhhhHhh-----------h
Confidence 2 122233333 5678999999999988776 45589999988665555443211 1
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
..+-.+.||-|.++|+-- +....|.+|.+
T Consensus 316 q~V~~Vk~S~Dskyi~SG-------------Sdd~nvRlWka 344 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISG-------------SDDGNVRLWKA 344 (433)
T ss_pred heeeEEEEeccccEEEec-------------CCCcceeeeec
Confidence 345678999999987662 44455677764
No 396
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=96.80 E-value=0.058 Score=55.81 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=111.4
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCC-CCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE-FPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
.+++.-| .++..++--. ++..|++|-.|--. -+... |.............+.|+++.++.
T Consensus 3 ~v~t~~G-~v~V~v~G~~------~~~kp~ilT~HDvG-----------lNh~scF~~ff~~~~m~~i~~~f~i~Hi~a- 63 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDP------KGNKPAILTYHDVG-----------LNHKSCFQGFFNFEDMQEILQNFCIYHIDA- 63 (283)
T ss_dssp EEEETTE-EEEEEEESS--------TTS-EEEEE--TT-------------HHHHCHHHHCSHHHHHHHTTSEEEEEE--
T ss_pred eeccCce-EEEEEEEecC------CCCCceEEEecccc-----------ccchHHHHHHhcchhHHHHhhceEEEEEeC-
Confidence 3555454 6777777422 12379999999621 11111 211111122233456799988444
Q ss_pred CCCCC--CCcccchhh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 722 PIIGE--GDEEANDRF----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 722 ~~~G~--G~~~~~~~~----~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|+ |....+..+ .++..+++..+++++ .+ +.+..+|--+|+++-..+|.++|+++-++|++++...
T Consensus 64 --PGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f----~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 64 --PGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF----GL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCT 135 (283)
T ss_dssp --TTTSTT-----TT-----HHHHHCTHHHHHHHH----T-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S
T ss_pred --CCCCCCcccccccccccCHHHHHHHHHHHHHhC----Cc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCC
Confidence 443 322223332 334455555555554 23 4799999999999999999999999999999998643
Q ss_pred CC--------------CCCCCccccc--chhh-------------------------hcH-------HHHHhc-Cccccc
Q 002164 796 RT--------------LTPFGFQNED--RTLW-------------------------EAT-------STYVEM-SPFMSA 826 (958)
Q Consensus 796 ~~--------------~~~~~~~~~~--~~~~-------------------------~~~-------~~~~~~-sp~~~~ 826 (958)
.. +...++.... .-.| .++ ..|... +.....
T Consensus 136 ~~gw~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~ 215 (283)
T PF03096_consen 136 AAGWMEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIER 215 (283)
T ss_dssp ---HHHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SEC
T ss_pred CccHHHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhc
Confidence 11 0000110000 0000 000 111111 222234
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
....+|+|++.|+.-+. .+.+.++..+|.. ...+++.++++|=... .+....+.+.+.=|+.
T Consensus 216 ~~~~c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 216 PSLGCPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TTCCS-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 55679999999999876 5678889888854 3689999998866553 4455555555555544
No 397
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.77 E-value=0.13 Score=57.57 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
...+....|-| |+..+... .|...+..||+++++.+.. .-+.... +.+.+|.|+...+|++
T Consensus 100 ~nAifDl~wap-ge~~lVsa--------sGDsT~r~Wdvk~s~l~G~~~~~GH~~S----vkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 100 KNAIFDLKWAP-GESLLVSA--------SGDSTIRPWDVKTSRLVGGRLNLGHTGS----VKSECFMPTNPAVFCT 162 (720)
T ss_pred cceeEeeccCC-CceeEEEc--------cCCceeeeeeeccceeecceeecccccc----cchhhhccCCCcceee
Confidence 34788899999 87766653 2466778888888776544 3323322 6788999998888876
No 398
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.76 E-value=0.22 Score=53.52 Aligned_cols=228 Identities=13% Similarity=0.143 Sum_probs=127.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
++|-+|++.+.+. ....-+...+++..++...|+|-...-+|... ..+.|...|++++....+......
T Consensus 210 G~VG~Wn~~~~~~-d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS--------yDGtiR~~D~~~~i~e~v~s~~~d-- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEK-DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS--------YDGTIRLQDFEGNISEEVLSLDTD-- 278 (498)
T ss_pred CcEEEEecCCCCC-ccCceEEeccCCccccceEecCCChhheeeec--------cCceeeeeeecchhhHHHhhcCcc--
Confidence 5789999942221 12222333445567899999996655445432 356788889888766555544221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
+..+.++.++.+...+++.. ..+.+-++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~-------------------------------------------------~~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGD-------------------------------------------------NVGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEee-------------------------------------------------cccceEEEEee
Confidence 11255777777766666651 1122335555
Q ss_pred -CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEE-EeccCCccccCccccc
Q 002164 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVR-ELCDLPLAEDIPIAFN 395 (958)
Q Consensus 322 -~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~-~l~~~~~~~~~p~~~~ 395 (958)
+| +...+.-. ..+.++++.|--.+++.+... ++...|||+.. ++.. .|...+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~H--------- 368 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLPH--------- 368 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceecccc---------
Confidence 33 23444433 578889999988887777633 34778999872 2221 2333221
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-Cc-eEEEeeccc------cCceeeecCC
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GP-EILHKLDLR------YGGISWCDDS 467 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~-~~l~~~~~~------~~~~~~spDg 467 (958)
...+.++.|||+|-.|+.. ..++.|.++|..-+... .+ ..| .++.. .....|.||-
T Consensus 369 --rrsV~sAyFSPs~gtl~TT-------------~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 369 --RRSVNSAYFSPSGGTLLTT-------------CQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred --cceeeeeEEcCCCCceEee-------------ccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCc
Confidence 1345678899998886653 45667888874100010 11 122 11111 2346899987
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..|+...- . ..|=+++..++
T Consensus 433 ~li~vg~~-~---r~IDv~~~~~~ 452 (498)
T KOG4328|consen 433 NLIVVGRY-P---RPIDVFDGNGG 452 (498)
T ss_pred cEEEEecc-C---cceeEEcCCCC
Confidence 76666532 2 23556666553
No 399
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.71 E-value=0.0026 Score=44.53 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.5
Q ss_pred eEEEeeccccCceeeecCCceEEEEEecc-ccceEEEE
Q 002164 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (958)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~ 485 (958)
++++........+.|||||++|+|+++.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666666778899999999999999876 12367774
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.69 E-value=0.17 Score=52.12 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
.++..+|.||.+.|+.+.+ +...|+.++.+|.-.+++.-.+... ...+++..+|.+++
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEE
Confidence 5888999999999888753 4678999998765555543222222 56788888886555
No 401
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.61 Score=54.40 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEcCC-CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
.-.++||.+++++....+ + +..+|+ +.. +.+...-.++..+...+.+ ++||+||.+|+.+..+
T Consensus 209 t~~~~spn~~~~Aa~d~d-G-rI~vw~-d~~~~~~~~t~t~lHWH~~~V~~------L~fS~~G~~LlSGG~E------- 272 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD-G-RILVWR-DFGSSDDSETCTLLHWHHDEVNS------LSFSSDGAYLLSGGRE------- 272 (792)
T ss_pred eeEEeccccceEEEeccC-C-cEEEEe-ccccccccccceEEEecccccce------eEEecCCceEeecccc-------
Confidence 347899999998876543 2 255554 222 2222223334444444444 8899999999877632
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~ 617 (958)
..|.+|.+++++.+-|-.-... .. ...+|||+..+.+..+. .+|.++..+
T Consensus 273 --------------~VLv~Wq~~T~~kqfLPRLgs~-----I~-------~i~vS~ds~~~sl~~~D----NqI~li~~~ 322 (792)
T KOG1963|consen 273 --------------GVLVLWQLETGKKQFLPRLGSP-----IL-------HIVVSPDSDLYSLVLED----NQIHLIKAS 322 (792)
T ss_pred --------------eEEEEEeecCCCcccccccCCe-----eE-------EEEEcCCCCeEEEEecC----ceEEEEecc
Confidence 2588999999986555443332 11 23577888777776662 335555443
No 402
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.67 E-value=0.089 Score=56.42 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred ccCCeEEEEeCCCCCC-CCceEEE--eeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 430 TPRDIIYTQQAEPVQG-EGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 430 ~~~~~l~~~~~~~~~g-~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+..+.|.+|.+ .+| .....+. ...+.+.++.|+++|++|+.......+-.+-|
T Consensus 399 S~~G~vrLW~i--~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 399 SWSGCVRLWKI--EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCCceEEEEe--cCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 44556667764 122 2333442 24566788999999999888765554333333
No 403
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.66 E-value=0.023 Score=58.05 Aligned_cols=139 Identities=14% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCCceecCCCCEE-EEEecCC--CCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 111 LPALSFSPQRDKI-LFLKRRA--LPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 111 ~~~~~~SPDG~~l-af~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
....+++|+.+.+ +|....+ ..+...+..+...+.++...+..+...+.+.+.+-|+|....||+..+.-.|..+
T Consensus 22 rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi-- 99 (361)
T KOG1523|consen 22 RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI-- 99 (361)
T ss_pred CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe--
Confidence 4455566665444 3333221 1233345555555555666666655555555568899988666655554444333
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc-eeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.....+.|||.+..+|..+. .....|+.+.-+..- .-+.+..+ +...+..+.|.|++-.|+..
T Consensus 100 NrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E~ENdWWVsKhikkP---irStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 100 NRAATCVKWSPKENKFAVGSG-------ARLISVCYYEQENDWWVSKHIKKP---IRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred ccceeeEeecCcCceEEeccC-------ccEEEEEEEecccceehhhhhCCc---cccceeeeeccCCcceeccc
Confidence 345788999999999988442 123334444322110 00011111 11126689999999887765
No 404
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.64 E-value=0.31 Score=49.35 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=81.5
Q ss_pred ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCce----EEEeccCCccccCcccccccccCcceeee
Q 002164 332 AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 332 ~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
...+++.|.. |-++|..++-+ .+..+||++.+. .++|..+. ..+..++|
T Consensus 151 aPlTSFDWne~dp~~igtSSiD-------------TTCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf 204 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSID-------------TTCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAF 204 (364)
T ss_pred CcccccccccCCcceeEeeccc-------------CeEEEEEEeeccccceeeEEEecC-------------cceeEEEe
Confidence 5678899987 55666666533 377899998651 23444332 45578899
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-Eee---ccccCceeeecCC-ceEEEEEeccccce
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKL---DLRYGGISWCDDS-LALVYESWYKTRRT 481 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~---~~~~~~~~~spDg-~~l~~~~~~~~~~~ 481 (958)
+.+|..+... ++..+.+.++|+ ...+...+ ... ....-.++|++.. ++++.... +. .
T Consensus 205 ~~~s~~~FAS------------vgaDGSvRmFDL---R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~-dS--~ 266 (364)
T KOG0290|consen 205 LKGSRDVFAS------------VGADGSVRMFDL---RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-DS--N 266 (364)
T ss_pred ccCccceEEE------------ecCCCcEEEEEe---cccccceEEecCCCCCCcceeeccCcCCchHHhhhhc-CC--c
Confidence 9977766553 344566777775 33333333 221 1223446777654 34442222 22 4
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
++.++|..-+ ..+......+...+.+ ++|.|-.+.-+..
T Consensus 267 ~V~iLDiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hict 305 (364)
T KOG0290|consen 267 KVVILDIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICT 305 (364)
T ss_pred eEEEEEecCC-CcceehhhcCcccccc------eEecCCCCceeee
Confidence 5777776654 2344444444444444 7898877554444
No 405
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.55 E-value=0.069 Score=55.80 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=85.1
Q ss_pred eEEEEEc-CCe----eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCcc
Q 002164 315 QLVLVSL-DGT----VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLA 387 (958)
Q Consensus 315 ~l~~~~~-~g~----~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~ 387 (958)
+|++... +|. .+.++.+ ..+..+.|||.-+.++++-.- ++.|.|||+..+..+ .++...
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~kA-- 300 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTKA-- 300 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEeec--
Confidence 3555544 452 3344444 678899999998888777633 458999999855221 222211
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce-EEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spD 466 (958)
....+.-++|+.+-..|+. .+..+.+-+||+-.+..+++. ....+...+..+.|+|.
T Consensus 301 ---------h~sDVNVISWnr~~~lLas-------------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 301 ---------HNSDVNVISWNRREPLLAS-------------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ---------cCCceeeEEccCCcceeee-------------cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 1123456889887664444 134556778886444555443 33556778899999997
Q ss_pred CceEEEEEeccccceEEEEEcCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...++.++..+. +..||.+.++.
T Consensus 359 e~s~iaasg~D~-QitiWDlsvE~ 381 (440)
T KOG0302|consen 359 EDSVIAASGEDN-QITIWDLSVEA 381 (440)
T ss_pred cCceEEeccCCC-cEEEEEeeccC
Confidence 665554444332 37788877665
No 406
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.50 E-value=0.5 Score=48.16 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=30.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEec
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC 382 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~ 382 (958)
..-+.++||||+..||++.. .+.|.++|+.|.....|.
T Consensus 44 PQWRkl~WSpD~tlLa~a~S-------------~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAES-------------TGTIRVFDLMGSELFVIP 81 (282)
T ss_pred chheEEEECCCCcEEEEEcC-------------CCeEEEEecccceeEEcC
Confidence 45567899999999999974 358999999987766554
No 407
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.035 Score=61.91 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=61.9
Q ss_pred CCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCC
Q 002164 364 FPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (958)
Q Consensus 364 ~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (958)
.+++|++||++.+..+.+........... ..+....+.+++-.+.|. +++. .+-...|.+|| +.
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~t~~sl-~sG~k~siYSLA~N~t~t-~ivs------------Ggtek~lr~wD--pr 201 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNVTVNSL-GSGPKDSIYSLAMNQTGT-IIVS------------GGTEKDLRLWD--PR 201 (735)
T ss_pred CCccEEEEEccCcchhhhhhccccccccC-CCCCccceeeeecCCcce-EEEe------------cCcccceEEec--cc
Confidence 56799999999664432222110000000 001112334444445552 2221 13344678888 46
Q ss_pred CCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 444 QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 444 ~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
...+...|..+...++.+..++||++++.++.+++ .+||.+.
T Consensus 202 t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt--IrlWdLg 243 (735)
T KOG0308|consen 202 TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT--IRLWDLG 243 (735)
T ss_pred cccceeeeeccccceEEEEEcCCCCeEeecCCCce--EEeeecc
Confidence 67777778777778888999999999998877665 6677653
No 408
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.46 E-value=0.008 Score=65.01 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=58.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CCcEEEEcCCCCCCCCCCccc-chhhHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEA-NDRFVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~ 745 (958)
.|++|++||..... ....+.......+.. .++.|+.+|... +-..... ........-..+..
T Consensus 71 ~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDWs~--~a~~~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 71 KPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDWSR--GASNNYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp SEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE-HH--HHSS-HHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcchh--hccccccchhhhHHHHHHHHHH
Confidence 79999999953111 011122223333333 488999855511 1000000 00111223344556
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEeccC
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (958)
.+..|.+...+++++|.|+|||+||.+|..++.+... ++..+....|.
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 6777775555789999999999999999999887755 67777777764
No 409
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.45 E-value=0.31 Score=50.18 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=67.8
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..++.++|.||.+.|+.+.+. +..|+.++.+|+-.+.+.-... ....++++.-+|+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l~g~------------~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPLDGF------------GDYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE-SS-------------SSEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeCCCC------------CCceeEEEECCCE
Confidence 457889999999999888855 3478888888776666543211 2235677876665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-----eEEE-----eeccccCceeeecCCceEEEEEeccccce
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-----~~l~-----~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
.++. + .....+++++++. .+... +.+. ..+..+.+++|.|.++.|+...+.+. .
T Consensus 78 ~vl~--~-----------Er~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P--~ 141 (248)
T PF06977_consen 78 YVLS--E-----------ERDQRLYIFTIDD-DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP--K 141 (248)
T ss_dssp EEEE--E-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS--E
T ss_pred EEEE--E-----------cCCCcEEEEEEec-cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC--h
Confidence 3332 1 1244677766511 22211 1221 12334678999999999988876655 5
Q ss_pred EEEEEcC
Q 002164 482 RTWVISP 488 (958)
Q Consensus 482 ~l~~~~~ 488 (958)
.||.++.
T Consensus 142 ~l~~~~~ 148 (248)
T PF06977_consen 142 RLYEVNG 148 (248)
T ss_dssp EEEEEES
T ss_pred hhEEEcc
Confidence 7888876
No 410
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.62 Score=52.08 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=99.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+++|||+.++.... ......++++|.+++........... -...+.+|+|+.++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999888652 11478899999888776554332221 24788999999888761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee------cCCCccccccccCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE------IGPPAVYTSLDPSPD 342 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~------l~~~~~~~~~~~SpD 342 (958)
. ..+.|..++. +-...+ +..+.......++||
T Consensus 179 ---------------~--------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 ---------------S--------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred ---------------c--------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 0 2345667776 333332 222234467789999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|+++++...... ...+...|...+......... . . .....+..+|+|+.++...
T Consensus 218 g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~-~---------~-~~~~~v~~~p~g~~~yv~~----- 271 (381)
T COG3391 218 GNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPV-G---------S-GAPRGVAVDPAGKAAYVAN----- 271 (381)
T ss_pred CCEEEEEeccCC----------CceEEEEeCCCceEEEecccc-c---------c-CCCCceeECCCCCEEEEEe-----
Confidence 999888764321 247777887765544431110 0 0 0235688999999887741
Q ss_pred CCcccccccCCeEEEEeC
Q 002164 423 GDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~ 440 (958)
...+.+++++.
T Consensus 272 -------~~~~~V~vid~ 282 (381)
T COG3391 272 -------SQGGTVSVIDG 282 (381)
T ss_pred -------cCCCeEEEEeC
Confidence 22456777773
No 411
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.38 E-value=0.018 Score=57.90 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 703 ~~~~~la~~G~~---vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.....|.++||. +++..+ |.+..... ....-.....+.+.|+.+++. ... ||=|+|||+||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 446689999999 677555 22222111 111122346677777777654 334 89999999999999988
Q ss_pred HHhC
Q 002164 777 LAHA 780 (958)
Q Consensus 777 a~~~ 780 (958)
+...
T Consensus 93 i~~~ 96 (219)
T PF01674_consen 93 IKGG 96 (219)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 7643
No 412
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.35 E-value=0.0053 Score=66.38 Aligned_cols=125 Identities=26% Similarity=0.285 Sum_probs=80.1
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE-EEcCCCCC-CC---C
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI-LGGPTTPI-IG---E 726 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v-l~~~~~~~-~G---~ 726 (958)
|+..+|.|. .++.+ .-++|+++||.|.++.+.-.+.++ ..|++.+-++ +.++||-. -| .
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 666778784 23333 459999999988877655554432 2556655544 44666421 12 1
Q ss_pred -CCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
|..+.+. .-..-|..-|+.|+.++ ---||++|.++|.|+|+.-+.+-+... ...|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 2333333 34467888899999996 236999999999999998765433321 146888888887544
No 413
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.09 Score=56.50 Aligned_cols=142 Identities=12% Similarity=0.008 Sum_probs=78.4
Q ss_pred ceEEEEEc-CCeeeecC-CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 314 TQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
.+||++.+ +|..-.+. .+ ..++-..||-||++|+..+++ +.+.+|.+.. .+...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskD-------------g~V~vW~l~~----lv~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKD-------------GAVLVWLLTD----LVSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCC-------------ccEEEEEEEe----ecccccCCCcc
Confidence 56999999 89654433 33 667888999999999877754 4788887531 11111100111
Q ss_pred cc-cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 391 p~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
|. -|+.+...+.++...+-|..-.+ +.++.+..+.+|++ ..+..-.-...+.....++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl-----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARL-----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceE-----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 12223333444444444322111 12355667788886 44432211234556677888998887
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002164 470 LVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~ 490 (958)
++..... ..+|+.++-.
T Consensus 232 ~yiGt~~----G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEE----GKIFQNLLFK 248 (476)
T ss_pred EEecCCc----ceEEeeehhc
Confidence 7665433 3477665543
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=1 Score=54.75 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=43.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+....+--|+..|.+.. +.++|.++|+++....-+....++ +....||||++++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~---------~~G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT---------ALGDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALI 127 (1265)
T ss_pred ceEEEEEecccceEEEEe---------cCCcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEE
Confidence 566777888888888854 366888888887766655444443 7789999999999987
No 415
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.31 E-value=0.15 Score=53.35 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=81.3
Q ss_pred ceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 366 ~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
..|++|...++..+. +..| |.+....+..+.|||.-+.+++.. +-.+.|.+||+ ..+
T Consensus 234 ~~I~lw~~~~g~W~v-------d~~P--f~gH~~SVEDLqWSptE~~vfaSc------------S~DgsIrIWDi--Rs~ 290 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKV-------DQRP--FTGHTKSVEDLQWSPTEDGVFASC------------SCDGSIRIWDI--RSG 290 (440)
T ss_pred cceEeeeeccCceee-------cCcc--ccccccchhhhccCCccCceEEee------------ecCceEEEEEe--cCC
Confidence 478888877654432 1111 223345677899999988877742 34556788885 333
Q ss_pred C-CceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCce
Q 002164 446 E-GPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523 (958)
Q Consensus 446 ~-~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 523 (958)
. +.... ..++.++.-+.|+.+-..|++....+. .+||.+..-.. ++++..+..+...+++ +.|+|....
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt--~~iwDLR~~~~-~~pVA~fk~Hk~pIts------ieW~p~e~s 361 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT--LSIWDLRQFKS-GQPVATFKYHKAPITS------IEWHPHEDS 361 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcceeeecCCCce--EEEEEhhhccC-CCcceeEEeccCCeeE------EEeccccCc
Confidence 2 22223 345668888999988776665544333 66776664443 3667777777666666 889997765
Q ss_pred EEEE
Q 002164 524 VIAK 527 (958)
Q Consensus 524 l~~~ 527 (958)
++..
T Consensus 362 ~iaa 365 (440)
T KOG0302|consen 362 VIAA 365 (440)
T ss_pred eEEe
Confidence 4444
No 416
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.48 Score=52.96 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=122.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
......+++|++++.... ....+.+++.++.....-...+.. ...++++|||+.++++-...
T Consensus 76 p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc-----
Confidence 345677889987766432 256788888665443332222221 44789999999999871100
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCCCCcEEEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....+++++. ++.... +..+......+++|||+.++.
T Consensus 138 -----------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 138 -----------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV 176 (381)
T ss_pred -----------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence 1245777777 553322 222222367899999999988
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
.... .+.+.+.|.++....+ ...... .....++..+.++|||++++.....
T Consensus 177 ~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~--------- 227 (381)
T COG3391 177 TNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG--------- 227 (381)
T ss_pred EecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc---------
Confidence 8733 3478888877665543 111000 0111345689999999988874211
Q ss_pred cccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+....+..++. ..+..... .........+..+|+|+.++...... ..+.++|....
T Consensus 228 -~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 -SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred -CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33333332 11111345688999999988775442 45888887663
No 417
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.11 Score=55.86 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=43.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.+...+-+|+|.+|+-. ....+||+|.+.+|....+....-. .+.-+.|+.||+.|+..
T Consensus 82 g~v~al~s~n~G~~l~ag---------~i~g~lYlWelssG~LL~v~~aHYQ----~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAG---------TISGNLYLWELSSGILLNVLSAHYQ----SITCLKFSDDGSHIITG 141 (476)
T ss_pred cceeeeecCCCceEEEee---------cccCcEEEEEeccccHHHHHHhhcc----ceeEEEEeCCCcEEEec
Confidence 456777889999887763 2467999999999986544322211 16678899999999866
No 418
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.27 E-value=0.32 Score=55.00 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc------CCccccCcccccccccCcceeeee
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD------LPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~------~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
...+.||+|.+.++|.... +++.++|.+|+..+.+.. .......|....+..+.......+
T Consensus 159 l~hv~ws~D~~~~Lf~~an-------------ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKAN-------------GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred ccceeecccHHHHHhhhcC-------------CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 4578899999999988743 378888887764333211 111111222111211211222222
Q ss_pred -cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 408 -SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 408 -pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
||-..+++-.+ .++-+|.+-. +...+..+ +....+.+..|+++|..|+...+
T Consensus 226 ~pdrP~lavcy~-----------nGr~QiMR~e----ND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 226 PPDRPRLAVCYA-----------NGRMQIMRSE----NDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred CCCCCEEEEEEc-----------Cceehhhhhc----CCCCCeEE-ecccEeecceecCCCcEEEEccC
Confidence 36555554211 1222332211 22233333 33355667899999999988754
No 419
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.26 E-value=0.12 Score=53.16 Aligned_cols=211 Identities=18% Similarity=0.146 Sum_probs=115.0
Q ss_pred eeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC
Q 002164 160 SFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (958)
Q Consensus 160 ~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~ 239 (958)
..+.+|.|||.++ ..-.+.|++++ +.+-...+ |.+ ++.+ +.....|.+||.++|++.....+.-
T Consensus 214 lrDnTikiWD~n~---~~c~~~L~GHt--GSVLCLqy--d~r-viis--------GSSDsTvrvWDv~tge~l~tlihHc 277 (499)
T KOG0281|consen 214 LRDNTIKIWDKNS---LECLKILTGHT--GSVLCLQY--DER-VIVS--------GSSDSTVRVWDVNTGEPLNTLIHHC 277 (499)
T ss_pred cccCceEEecccc---HHHHHhhhcCC--CcEEeeec--cce-EEEe--------cCCCceEEEEeccCCchhhHHhhhc
Confidence 3346889999743 12345666654 44555554 444 3332 3446789999999998865543333
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
.. +-.+.++ +| +++..+.+ ..-.+|.+
T Consensus 278 ea----VLhlrf~-ng-~mvtcSkD-----------------------------------------------rsiaVWdm 304 (499)
T KOG0281|consen 278 EA----VLHLRFS-NG-YMVTCSKD-----------------------------------------------RSIAVWDM 304 (499)
T ss_pred ce----eEEEEEe-CC-EEEEecCC-----------------------------------------------ceeEEEec
Confidence 21 4456665 44 33332110 11224444
Q ss_pred Ec-CC-eee-ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccc
Q 002164 320 SL-DG-TVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAF 394 (958)
Q Consensus 320 ~~-~g-~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~ 394 (958)
+. +. ..+ .|... ..+..+.|+ .|+|+..+.+ .+|.+|+..+.+.. .|..+.
T Consensus 305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD-------------RTikvW~~st~efvRtl~gHk--------- 360 (499)
T KOG0281|consen 305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD-------------RTIKVWSTSTCEFVRTLNGHK--------- 360 (499)
T ss_pred cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC-------------ceEEEEeccceeeehhhhccc---------
Confidence 43 21 222 23333 556666664 6788776643 48999999876543 333221
Q ss_pred cccccCcceeeee-cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEE
Q 002164 395 NSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 395 ~~~~~~~~~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
++++-- -.|+ +++. .+..+.|.+|++ ..|.-.+.|..++.-++-+.| |.++|+..
T Consensus 361 -------RGIAClQYr~r-lvVS------------GSSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 361 -------RGIACLQYRDR-LVVS------------GSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred -------ccceehhccCe-EEEe------------cCCCceEEEEec--cccHHHHHHhchHHhhhheee--cCceeeec
Confidence 222222 1232 2221 245667889986 345566777777766777777 56677765
Q ss_pred EeccccceEEEEEcCC
Q 002164 474 SWYKTRRTRTWVISPG 489 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~ 489 (958)
.-++. .++|.+...
T Consensus 417 aYDGk--ikvWdl~aa 430 (499)
T KOG0281|consen 417 AYDGK--IKVWDLQAA 430 (499)
T ss_pred cccce--EEEEecccc
Confidence 43332 567765543
No 420
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.25 E-value=1.4 Score=53.64 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=91.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+.++.|--|+..|.+.... ++|.++|..+.....+... ..|+..++||||++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-------------G~iilvd~et~~~eivg~v-------------d~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-------------GDIILVDPETLELEIVGNV-------------DNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecC-------------CcEEEEcccccceeeeeec-------------cCceEEEeecCCCc
Confidence 356677788888888887743 3777887766554443332 25778899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEe--CCC-----C--------------CCCCceEEEee----------------
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQ--AEP-----V--------------QGEGPEILHKL---------------- 454 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-----~--------------~g~~~~~l~~~---------------- 454 (958)
.+++.+.. ..|++.. .+| + =|.+.+++...
T Consensus 123 ~l~liT~~-------------~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 123 LLALITGR-------------QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred EEEEEeCC-------------cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 98886431 1111110 000 0 01222222110
Q ss_pred -----ccccCceeeecCCceEEEEEeccc-cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 455 -----DLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 455 -----~~~~~~~~~spDg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+..-.++.|--||++++...-... +...+.+++.++. ...+..+... -.+.++|-|.|..++...
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~-----l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEG-----LQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCcccc-----cccceeecCCCCeEeeee
Confidence 111234899999998887543222 2134556665531 1112222222 223389999998887665
Q ss_pred eeccCCCcEEEEccCCCC
Q 002164 529 KKENDEGTYILLNGNGAT 546 (958)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (958)
...+ +...+|+.++|-.
T Consensus 261 ~~~s-d~~IvffErNGL~ 277 (1265)
T KOG1920|consen 261 CKTS-DSDIVFFERNGLR 277 (1265)
T ss_pred ecCC-CCcEEEEecCCcc
Confidence 4432 3367777777644
No 421
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.24 E-value=0.57 Score=50.49 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+.+..++.+...++|..+- +.+.+||+.. .+...+..+. ..+.++++.|-
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~-------------G~f~~iD~R~~~s~~~~~~lh~-------------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNV-------------GNFNVIDLRTDGSEYENLRLHK-------------KKITSVALNPV 333 (498)
T ss_pred eeeeeccccCCCccEEEeecc-------------cceEEEEeecCCccchhhhhhh-------------cccceeecCCC
Confidence 556788888888888887643 2566777763 3333332221 34567888887
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
-.+++.+ .+.++.+.+||+-.+.++..-.| ..+...+.+..|||+|-.|+.+..++. .+||..
T Consensus 334 ~p~~laT------------~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~--IRv~ds 398 (498)
T KOG4328|consen 334 CPWFLAT------------ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE--IRVFDS 398 (498)
T ss_pred Cchheee------------cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc--eEEeec
Confidence 7776653 13344566777533444331133 344556788999999888877765443 556654
No 422
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.66 Score=51.50 Aligned_cols=117 Identities=11% Similarity=0.202 Sum_probs=68.2
Q ss_pred cceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEe------c
Q 002164 313 TTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------C 382 (958)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l------~ 382 (958)
...||+++| .|. ..++... +.+..+..++-...|++... .+.+..||...+. ...| .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-------------~g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-------------DGVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEeccc-------------CceEEEecchhhhhheeeecccccC
Confidence 356999999 774 2333322 55666777777666766652 3478889877432 2222 1
Q ss_pred cCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc--ccCc
Q 002164 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL--RYGG 460 (958)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~--~~~~ 460 (958)
.+++.+.. ..+.++.|+-||=.+++- ...+.++++|+ -..++-.+-.+.+ .+..
T Consensus 221 s~pg~~~~--------~svTal~F~d~gL~~aVG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 221 SHPGGDAA--------PSVTALKFRDDGLHVAVG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKK 276 (703)
T ss_pred CCcccccc--------CcceEEEecCCceeEEee-------------ccCCcEEEEEc---ccCCceeecccCCccceee
Confidence 12222111 236789999998777773 34567899996 5455544433332 3455
Q ss_pred eeeecC
Q 002164 461 ISWCDD 466 (958)
Q Consensus 461 ~~~spD 466 (958)
+.|-+.
T Consensus 277 l~~~~~ 282 (703)
T KOG2321|consen 277 LDWQDT 282 (703)
T ss_pred eccccc
Confidence 677554
No 423
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.21 E-value=0.22 Score=48.48 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-
Q 002164 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA- 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~- 780 (958)
.....+-+.+|..+.+..+. +.|+|.. ...+..+|+..+++++...++. ..|+++|||-|..-.++++.+.
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~fS--t~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGFS--TDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCcc--cceEEEecCccchHHHHHHHhcc
Confidence 34556778999998755443 3466653 2456788889999988776553 4899999999999999888543
Q ss_pred -CCceeEEEEeccCCCCCC
Q 002164 781 -PHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 781 -p~~~~a~v~~~~~~~~~~ 798 (958)
+..+.++|+.+|+.|.++
T Consensus 130 ~~r~iraaIlqApVSDrEY 148 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDREY 148 (299)
T ss_pred chHHHHHHHHhCccchhhh
Confidence 456899999999988763
No 424
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=96.17 E-value=0.22 Score=51.34 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=57.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+-|+|.++.. + .-...+.+ +|..++...+-|+--.|+.+.. ....|.+|++.++....+..+-++ .
T Consensus 115 GvIrVid~~~-~--~~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~eg-H 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-G--QCSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVEG-H 180 (385)
T ss_pred eEEEEEecch-h--hhccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEeccccc-c
Confidence 5678888743 1 11223333 4568999999998877776543 356788889988888776543332 2
Q ss_pred cccccceEEecCCeEEEEE
Q 002164 243 NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (958)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3336689999999988855
No 425
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.13 E-value=0.08 Score=59.65 Aligned_cols=98 Identities=10% Similarity=-0.104 Sum_probs=60.5
Q ss_pred eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----cccCceeeecCCceEEEEEeccc
Q 002164 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----LRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 403 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++...|..+.++.. ..+..|.++++ ..++.++..++. +..-.+...|.|-+|+....+++
T Consensus 601 Dm~Vdp~~k~v~t~-------------cQDrnirif~i---~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTV-------------CQDRNIRIFDI---ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred EeeeCCCcceEEEE-------------ecccceEEEec---cccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 34455655655542 34456778885 555555554443 33344677888988887765554
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|-.+|.-++ +.......+.+.+.+ +.|++|-++|+...
T Consensus 665 ----l~~~Df~sg--EcvA~m~GHsE~VTG------~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 665 ----LCFVDFVSG--ECVAQMTGHSEAVTG------VKFLNDCKHLISVS 702 (1080)
T ss_pred ----eEEEEeccc--hhhhhhcCcchheee------eeecccchhheeec
Confidence 666666664 333333445555555 78999999998776
No 426
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.019 Score=64.79 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=52.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +....++-+||.....+........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~--- 154 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHT--- 154 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCc---
Confidence 5899999964 1 3356666644 35777889998876533 3346677777766433333333222
Q ss_pred cccccceEEecCCeEEEEE
Q 002164 243 NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (958)
..+..++++|||++++..
T Consensus 155 -~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 155 -RVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -ceeEEEeecCCCceeecc
Confidence 226788999999999954
No 427
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.043 Score=52.72 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=60.2
Q ss_pred CceEEEEECCCCC-cCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc-ccchhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEF-KSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~a 746 (958)
+..++|++||.+. .++.|+-.+.-+-+--.+.-..+...-.+.||.|+..+..+-+-.-+. ..+..+....++-+.-+
T Consensus 100 ~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yv 179 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYV 179 (297)
T ss_pred ccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHH
Confidence 3568999999532 222222222211111111122345556678999887444222111111 11222233334444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..+++.. ..++.|+++-||+||.+++.++.+.|+
T Consensus 180 w~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 180 WKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 4444443 456789999999999999999999875
No 428
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.95 E-value=0.22 Score=55.90 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=96.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+.+--+|+.++..+.+ +.+.+|+...+++ .-...|.. +..
T Consensus 75 WVNDiiL~~~~~tlIS~SsD---------------------------------tTVK~W~~~~~~~-~c~stir~--H~D 118 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSD---------------------------------TTVKVWNAHKDNT-FCMSTIRT--HKD 118 (735)
T ss_pred HHhhHHhhcCCCceEEecCC---------------------------------ceEEEeecccCcc-hhHhhhhc--ccc
Confidence 56778888999988888876 5889999865431 12233332 234
Q ss_pred cccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-------cccccceEEecCCeEEEEE
Q 002164 190 KLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~l~~~ 261 (958)
++...+. .++...+|- +.=...|++||+.+|.++.+........ ...+.+++-.+.|..|+..
T Consensus 119 YVkcla~~ak~~~lvaS---------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVAS---------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEe---------cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 6777766 555554444 2336689999999886643322221110 0012233333445333322
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~ 338 (958)
. ....|-++|- ++ +...|-.+ .++..+.
T Consensus 190 -----------------------g--------------------------tek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 190 -----------------------G--------------------------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred -----------------------C--------------------------cccceEEeccccccceeeeeccccceEEEE
Confidence 0 1233566666 54 44455544 7888899
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
.++||.+++..+.+ +.|.+||+.-
T Consensus 221 ~~dDGt~~ls~sSD-------------gtIrlWdLgq 244 (735)
T KOG0308|consen 221 VNDDGTRLLSASSD-------------GTIRLWDLGQ 244 (735)
T ss_pred EcCCCCeEeecCCC-------------ceEEeeeccc
Confidence 99999999988744 4899999973
No 429
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.90 E-value=0.042 Score=62.64 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=83.7
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc--C--cHHHHHHHHCCcEEEE
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--G--STSVLLWLARGFAILG 717 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~la~~G~~vl~ 717 (958)
+.+....+..+..|+|.-.+ ++. ..|+||++.|||.++.-.+.....+|-..... . ..-...|.+. ..+|.
T Consensus 16 l~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~ 90 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLF 90 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEE
T ss_pred EecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEE
Confidence 44544467889888886544 333 37999999999988766655555555444311 0 0111234444 44555
Q ss_pred cCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHh----C------CCc
Q 002164 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A------PHL 783 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~----~------p~~ 783 (958)
+|..-..|+........ -.....+|+..++..... .+.....++.|+|.||||..+-.+|.. . +=.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 44323345443322222 234556676666665444 455566689999999999987666542 2 123
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
++++++.+|..+
T Consensus 171 LkGi~IGng~~d 182 (415)
T PF00450_consen 171 LKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEESE-SB
T ss_pred cccceecCcccc
Confidence 889999888654
No 430
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.89 E-value=0.42 Score=48.74 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.5
Q ss_pred eeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEE
Q 002164 159 MSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVA 224 (958)
Q Consensus 159 ~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~ 224 (958)
.+.+....||.+++ | .-....+++. +.++...|+|.|..++..+ +++..+||.+
T Consensus 166 ASADhTA~iWs~Es-g--~CL~~Y~GH~--GSVNsikfh~s~~L~lTaS-------GD~taHIW~~ 219 (481)
T KOG0300|consen 166 ASADHTARIWSLES-G--ACLATYTGHT--GSVNSIKFHNSGLLLLTAS-------GDETAHIWKA 219 (481)
T ss_pred cccccceeEEeecc-c--cceeeecccc--cceeeEEeccccceEEEcc-------CCcchHHHHH
Confidence 34445678888865 2 2233444533 5799999999887666644 6677888874
No 431
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=95.81 E-value=0.089 Score=52.48 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEeccCCCCCC-CC------CCcccc-
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTL-TP------FGFQNE- 806 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~-~~------~~~~~~- 806 (958)
..=+..++.+|.+++.+ .++-++||||||.....++..+. +.++..|.+++.++... .+ ......
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 44466888999999766 48999999999999988887541 23677777777776111 11 001110
Q ss_pred -cchhhhcHHHHHhcCcccccCCC--CCCEEEEeeCC------CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002164 807 -DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEE------DNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (958)
Q Consensus 807 -~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~------D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H 875 (958)
..++. ..|... +...+ ..-+|++.|+- |..|| ...+...+..+...+..+.-.+|+| +.|
T Consensus 197 ~~~t~y---~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 197 LIKTPY---YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred ccCcHH---HHHHHh----cceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 00110 111111 11111 35689999975 45677 6778888888888887777777876 467
Q ss_pred cCCCcccHHHHHHHHHHHHHH
Q 002164 876 GYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.-. .++ ..+...+..||..
T Consensus 268 s~l-hen-~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL-HEN-PTVAKYVKNFLWE 286 (288)
T ss_pred hcc-CCC-hhHHHHHHHHhhc
Confidence 643 333 4556667777754
No 432
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=2.5 Score=43.57 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=39.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
.+++..+|+||.+.|..+. +....|.-++.+|.-.+.+ +...+ .+.+.|.-+|++.+.
T Consensus 86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~n~fvi~ 145 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGGNQFVIV 145 (316)
T ss_pred ccccceeeCCCcceEEEec--------CCCceEEEEecCCceEEEecccccCC------hhHeEEecCCEEEEE
Confidence 3589999999998877654 3466788788776555543 22222 457889888876663
No 433
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.75 E-value=0.02 Score=50.27 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=46.5
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..|+||+.++.|+..| +..++++.+.|.. .+++..++.||.... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 5899999999999999 9999999998875 489999999999753 2223444555555543
No 434
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=95.70 E-value=2.1 Score=47.97 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCC-Cce-eeccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKA-RPLFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~-~~lt~~~~ 239 (958)
..+.+|+..... .....+..... ..+....+ ++++..++... ......+.+++..+ ... ..+.....
T Consensus 87 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~ 156 (466)
T COG2319 87 GTIKLWDLDNGE--KLIKSLEGLHD-SSVSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSE 156 (466)
T ss_pred CcEEEEEcCCCc--eeEEEEeccCC-CceeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCcc
Confidence 367777764310 02223322111 13444555 88888444432 11234677777765 333 33333222
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. +..+.|+|+++.++.... ....+.++
T Consensus 157 ~-----v~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~ 183 (466)
T COG2319 157 S-----VTSLAFSPDGKLLASGSS------------------------------------------------LDGTIKLW 183 (466)
T ss_pred c-----EEEEEECCCCCEEEecCC------------------------------------------------CCCceEEE
Confidence 2 568999999996654410 01235555
Q ss_pred Ec-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE--eccCCccccCcccc
Q 002164 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAF 394 (958)
Q Consensus 320 ~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~--l~~~~~~~~~p~~~ 394 (958)
++ .+. ...+... ..+..++|+|+|+.++.... .++.+.+||...+.... +..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~--------- 242 (466)
T COG2319 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS------------SDGTIRLWDLSTGKLLRSTLSGHS--------- 242 (466)
T ss_pred EcCCCceEEeeccCCCceEEEEEcCCcceEEEEec------------CCCcEEEEECCCCcEEeeecCCCC---------
Confidence 55 433 3333333 67788999999994444411 13467788766333222 11110
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEE
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
... ...|+|++..++.. .....+.+++. ..... ...+......+..+.|+|++..++..
T Consensus 243 ----~~~-~~~~~~~~~~~~~~-------------~~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 243 ----DSV-VSSFSPDGSLLASG-------------SSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred ----cce-eEeECCCCCEEEEe-------------cCCCcEEEeee--cCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 111 11699999444421 34556777775 11222 12221224456667899988888874
Q ss_pred EeccccceEEEEEcCCC
Q 002164 474 SWYKTRRTRTWVISPGS 490 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~ 490 (958)
. .++. ..+| +...
T Consensus 303 ~-~d~~-~~~~--~~~~ 315 (466)
T COG2319 303 S-SDGT-VRLW--DLET 315 (466)
T ss_pred e-CCCc-EEEE--EcCC
Confidence 3 3332 5677 5444
No 435
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.81 Score=52.67 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=66.0
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..++++.|||--...+++..+ .+.+.+||+.-- -.++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 678899999944333333322 348999999732 223333332 23356889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEE-EeccccceEEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYE-SWYKTRRTRTWVI 486 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~l~~~ 486 (958)
+.+|+-- +-+..+-+|+. ++.....+ ...-..+..+.|-|+-++.+.+ +-......++|.+
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 8887761 22335778885 43333333 2334567789999997764443 3333323445544
No 436
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.58 E-value=1.8 Score=47.48 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=35.4
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcccc-----------CCCCC-CceEeccCCceEE
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY-----------SDPGS-PMMRRTSTGTYVI 525 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~spdG~~l~ 525 (958)
+..+..|.|.|+|+++.+-.+ .++++|.... ..++++.....+... ...+. .|++.|-||++|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 456789999999999988775 5777777665 355554322111110 01122 3578999999999
Q ss_pred EEe
Q 002164 526 AKI 528 (958)
Q Consensus 526 ~~~ 528 (958)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 886
No 437
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.49 E-value=0.066 Score=58.79 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=87.1
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP 722 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~ 722 (958)
|.+.++...+=+.|.+..+.... -|+.|++-|-.... . .|..........|| +.|-.|+. .-
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEgp~~--------~---~wv~~~~~~~~~~AkkfgA~v~~---lE 125 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEGPES--------D---KWVGNENLTWLQWAKKFGATVFQ---LE 125 (514)
T ss_pred hhcchhhhhhhheeeccccccCC---CceEEEEcCCCCCC--------C---CccccCcchHHHHHHHhCCeeEE---ee
Confidence 34445555555667776653222 69999997732111 0 12111222233455 46888887 33
Q ss_pred CCCCCCcccc---------hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 723 IIGEGDEEAN---------DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 723 ~~G~G~~~~~---------~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
.+=||.+..- .-...+.+.|+...|+.+..+ +.-|+.+.+.+|.||-|.|++|+=..+|+++.++|+.++
T Consensus 126 HRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 126 HRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred eeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 4445544211 112457789999999998776 456667999999999999999999999999999998877
Q ss_pred CC
Q 002164 793 AY 794 (958)
Q Consensus 793 ~~ 794 (958)
+.
T Consensus 206 pv 207 (514)
T KOG2182|consen 206 PV 207 (514)
T ss_pred ce
Confidence 54
No 438
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.48 E-value=0.011 Score=64.92 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=66.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.-+|+++|||.|. ..+...+. .+.+.|+. .|.-|+.++| +.+++..++...+++.-|.-
T Consensus 396 ~sli~HcHGGGfV--------AqsSkSHE----~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGFV--------AQSSKSHE----PYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCcee--------eecccccc----HHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 4689999998643 32222222 33556664 6999998777 66777788899999999999
Q ss_pred HHHHcCC---CCCCcEEEEEeChHHHHHHHHHHh
Q 002164 749 EVVRRGV---AHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 749 ~l~~~~~---~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
|++++.. -..+||++.|.|+||.+.+-++.+
T Consensus 456 W~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 9998621 245899999999999987766653
No 439
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.48 E-value=0.52 Score=53.18 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=21.9
Q ss_pred eEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeec
Q 002164 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIH 352 (958)
Q Consensus 315 ~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~ 352 (958)
.|..+|. +++ .+++.- ..+..+.||+||+++++.+.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCC
Confidence 4788888 664 445543 236788999999999999744
No 440
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.40 E-value=1.9 Score=44.61 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCceEEEEEcCCCcee--eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccch
Q 002164 217 SKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (958)
Q Consensus 217 ~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 294 (958)
..++|-++++..-+.. .+....... +.-++..-+|..||.++.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~----Iacv~Ln~~Gt~vATaSt------------------------------- 201 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSD----IACVALNLQGTLVATAST------------------------------- 201 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCc----eeEEEEcCCccEEEEecc-------------------------------
Confidence 3578888887764442 222222222 567778899999987611
Q ss_pred hhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeE
Q 002164 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVG 369 (958)
Q Consensus 295 ~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~ 369 (958)
..+-|-+.|. +| ....+-.+ ..+..++||||+.+|+++++.+ ++.
T Consensus 202 -----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlH 251 (346)
T KOG2111|consen 202 -----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLH 251 (346)
T ss_pred -----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEE
Confidence 1122445566 66 33344333 6778999999999999999653 788
Q ss_pred EEeccC
Q 002164 370 VWTTDG 375 (958)
Q Consensus 370 l~d~~~ 375 (958)
++.+..
T Consensus 252 iF~l~~ 257 (346)
T KOG2111|consen 252 IFSLRD 257 (346)
T ss_pred EEEeec
Confidence 887764
No 441
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=2.2 Score=43.92 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++..|+||.+.|+.+.+..+ .|.-.+.+|.-.+.+.-.-. .....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~------------~iVElt~~GdlirtiPL~g~------------~DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPA------------AIVELTKEGDLIRTIPLTGF------------SDPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCCc------------eEEEEecCCceEEEeccccc------------CChhHeEEecCCE
Confidence 56889999999999998876532 55555666776666543221 1234577777776
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC------ceEEEe--e-ccccCceeeecCCceEEEEEeccccceE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------PEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
..+. +. ....+|.+.+++ ++.. ...|.. . +-...+++|+|..+.+++..+++. ..
T Consensus 142 fvi~--dE-----------R~~~l~~~~vd~-~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~ 205 (316)
T COG3204 142 FVIV--DE-----------RDRALYLFTVDA-DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IG 205 (316)
T ss_pred EEEE--eh-----------hcceEEEEEEcC-CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cE
Confidence 5444 11 123455555411 2111 111111 1 334567999999999999988877 67
Q ss_pred EEEEcC
Q 002164 483 TWVISP 488 (958)
Q Consensus 483 l~~~~~ 488 (958)
||.++.
T Consensus 206 I~~~~~ 211 (316)
T COG3204 206 IFEVTQ 211 (316)
T ss_pred EEEEec
Confidence 888873
No 442
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.19 E-value=2.4 Score=45.81 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=43.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC-eEEEEE
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TLLVCT 261 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~l~~~ 261 (958)
+...+|.-.=+.|+++. .....|.+||+++|++.+.+...+.. +..+.|.|.- ..|+..
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLSG 305 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEec
Confidence 45678887888888853 34678999999999998877655444 7899999865 455533
No 443
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.05 E-value=0.027 Score=57.09 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEeccC
Q 002164 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (958)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (958)
.....|++|+.+.-.-.+++|.+.|||.||++|.++++..+ +++..+.+..|+
T Consensus 66 ~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 66 PQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 34456777776642223446999999999999999998742 467788777653
No 444
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.99 E-value=2.2 Score=44.13 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=61.5
Q ss_pred CceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCe-EEEEeCCCC
Q 002164 365 PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDI-IYTQQAEPV 443 (958)
Q Consensus 365 ~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 443 (958)
.+.+.+.|+...... .|...+.+...+.-++.+-+|..++-. +..+. |.++|. .
T Consensus 158 ~GqvQi~dL~~~~~~----------~p~~I~AH~s~Iacv~Ln~~Gt~vATa-------------StkGTLIRIFdt--~ 212 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPN----------APSIINAHDSDIACVALNLQGTLVATA-------------STKGTLIRIFDT--E 212 (346)
T ss_pred cceEEEEEhhhcCcC----------CceEEEcccCceeEEEEcCCccEEEEe-------------ccCcEEEEEEEc--C
Confidence 468999998754431 111112222344567788888877763 34444 677885 4
Q ss_pred CCCCceEEEee--ccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 444 QGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 444 ~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|.....+-.+ ...+..++||||+.+|+.+++.++ .+++.+..
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT--lHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT--LHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe--EEEEEeec
Confidence 55555555322 345667999999999999988776 56666654
No 445
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.87 E-value=1 Score=45.33 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=45.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~~~lt~~~~~~ 241 (958)
.++..+.+..++..-....++. ....-...+||......|.... ...+-+||+..- .+-.-.......
T Consensus 180 ~~Vf~y~id~~sey~~~~~~a~--t~D~gF~~S~s~~~~~FAv~~Q---------dg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 180 RRVFRYAIDDESEYIENIYEAP--TSDHGFYNSFSENDLQFAVVFQ---------DGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred CcceEEEeCCccceeeeeEecc--cCCCceeeeeccCcceEEEEec---------CCcEEEEEecccccchhhhcccCCC
Confidence 5677777755442211112222 1123466789987777776552 334555555432 211111111112
Q ss_pred ccccccceEEecCC--eEEEEE
Q 002164 242 LNAIFDNFVWVNNS--TLLVCT 261 (958)
Q Consensus 242 ~~~~~~~~~wspDG--~~l~~~ 261 (958)
.++.+..+.||+-| .+|+|+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred CCCceEEEEecCCCcceEEEEe
Confidence 34458899999876 566665
No 446
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=94.85 E-value=0.97 Score=46.45 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=80.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc-CcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~vl~ 717 (958)
.++..+++.-| .++..++--+ +++.|++|-.|.-...... .|... ....++.+..+ |+|+.
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~s----------cFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHKS----------CFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchHh----------HhHHhhcCHhHHHHHhh-eEEEe
Confidence 34556676664 4777777421 1246889988873211110 01111 12334556667 88888
Q ss_pred cCCCCCCCCCCc--ccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 718 GPTTPIIGEGDE--EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 718 ~~~~~~~G~G~~--~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
++ ..|+-.. ..+. ...+...+++..+++++ .-+.|.-+|--+|+++-...|..+|+++-++|+++
T Consensus 84 V~---~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f------~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn 154 (326)
T KOG2931|consen 84 VD---APGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF------GLKSVIGMGVGAGAYILARFALNHPERVLGLVLIN 154 (326)
T ss_pred cC---CCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc------CcceEEEecccccHHHHHHHHhcChhheeEEEEEe
Confidence 43 3443221 1122 22456677777777764 23578899999999999999999999999999998
Q ss_pred cCC
Q 002164 792 GAY 794 (958)
Q Consensus 792 ~~~ 794 (958)
+..
T Consensus 155 ~~~ 157 (326)
T KOG2931|consen 155 CDP 157 (326)
T ss_pred cCC
Confidence 753
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.69 E-value=8 Score=42.14 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=66.2
Q ss_pred ceeEEEeccCceEEEeccCCccc-cCcc--cccccccCcceeeeecCCCCceEEEEec---cCCCcccccccCCeEEEEe
Q 002164 366 RQVGVWTTDGIFVRELCDLPLAE-DIPI--AFNSVRKGMRSINWRSDKPSTLYWAETQ---DGGDAKVEVTPRDIIYTQQ 439 (958)
Q Consensus 366 ~~i~l~d~~~~~~~~l~~~~~~~-~~p~--~~~~~~~~~~~~~~spDG~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~ 439 (958)
..|+.++.+|...+.+.. |..- .... .......+..+++++|||+.|+...+.. ++.......+..-.|+.++
T Consensus 112 p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred CEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEec
Confidence 478888888665555422 1110 0000 0001124678899999999888776644 2211111112223455665
Q ss_pred CCCCC-CCCceEE-E--e------eccccCceeeecCCceEEEEEec---cccceEEEEEcCCC
Q 002164 440 AEPVQ-GEGPEIL-H--K------LDLRYGGISWCDDSLALVYESWY---KTRRTRTWVISPGS 490 (958)
Q Consensus 440 ~~~~~-g~~~~~l-~--~------~~~~~~~~~~spDg~~l~~~~~~---~~~~~~l~~~~~~~ 490 (958)
. .. +....+. . . ....+..+.+-+|++.|+..... .....+||.+++..
T Consensus 191 ~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 191 P--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred C--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 3 22 2122332 1 1 23456678999999988777652 23458899999865
No 448
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.69 E-value=0.077 Score=54.73 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEE
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (958)
.-|+. ....|++.........+...+...++|..+ ++. ..+.+.|+|+||++|..+|.+- .+.++-+++
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~--QP~---GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRV--QPE---GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHh--CCC---CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55665 444555433233334455655555555433 332 3789999999999999998863 223555555
Q ss_pred eccC
Q 002164 790 RSGA 793 (958)
Q Consensus 790 ~~~~ 793 (958)
+...
T Consensus 99 lD~~ 102 (257)
T COG3319 99 LDAV 102 (257)
T ss_pred eccC
Confidence 5443
No 449
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=5.7 Score=40.71 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=93.7
Q ss_pred eeccccCceeeecCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeec
Q 002164 453 KLDLRYGGISWCDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (958)
Q Consensus 453 ~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (958)
....+.-.++++|-. +.++|...-+ .-.+++|+.+. .+++.+......-.|+. -.|||||++|+.+.++.
T Consensus 65 ~lpaR~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~LYATEndf 135 (366)
T COG3490 65 ALPARGHGIAFHPALPRAVAFARRPG---TFAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLLYATENDF 135 (366)
T ss_pred ecccccCCeecCCCCcceEEEEecCC---ceEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEEEeecCCC
Confidence 334556678899984 5577775544 35778888886 34555544444444442 34899999998887543
Q ss_pred cCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCC-----
Q 002164 532 NDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKT----- 606 (958)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~----- 606 (958)
|. ++..|-+||.. ....++-+-.. .-+.. .+..+.+||+.+++...+..
T Consensus 136 d~----------------~rGViGvYd~r-~~fqrvgE~~t--------~GiGp-Hev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 136 DP----------------NRGVIGVYDAR-EGFQRVGEFST--------HGIGP-HEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred CC----------------CCceEEEEecc-cccceeccccc--------CCcCc-ceeEEecCCcEEEEeCCceeccccc
Confidence 22 33457778775 23333322111 00111 13567888888877554322
Q ss_pred ---------CCceEEEEECCCCCeeEeecCCCCCC-CCCCCcEEEEEEEeCCCeEEEEEEEe
Q 002164 607 ---------ENTQYYIQSWPDKKSCQITDFPHPYP-QLASLQKELIKYQRKDGVQLSATLYL 658 (958)
Q Consensus 607 ---------~p~~~~~~d~~~g~~~~Lt~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~l~~ 658 (958)
..+.+.+++..+|+...-. .+| .+..+..+.+.+- .||+...+.-|.
T Consensus 190 gR~~lNldsMePSlvlld~atG~liekh----~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEKH----TLPASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhhc----cCchhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 2355666776666532211 122 3444455555554 488877777776
No 450
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=94.27 E-value=0.21 Score=51.27 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CceeEEEEeccCCCCCCCCCCcccccch
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 809 (958)
...++...++.|.+.. ...+|.|++||||+.+.+.++... + .+|..+|+.+|=.+..
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d------------ 140 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND------------ 140 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH------------
Confidence 3455666666666652 346999999999999999877642 1 2466677776643310
Q ss_pred hhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCC
Q 002164 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (958)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (958)
.+...- ..+.+...++.+.+..+|..
T Consensus 141 ------~f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 141 ------VFRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred ------HHHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 010000 02223347889999999865
No 451
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=94.22 E-value=0.4 Score=63.60 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=48.5
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (958)
..++.|+.+ ...|++..............++.+.++.+. ...++.++|||+||.++..+|.+ .++++..
T Consensus 1092 ~~~~~v~~~---~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGI---QSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 456888873 444555432223345556666655554321 12479999999999999999885 4677888
Q ss_pred EEEecc
Q 002164 787 GIARSG 792 (958)
Q Consensus 787 ~v~~~~ 792 (958)
++...+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 877664
No 452
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.22 E-value=0.051 Score=57.93 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe-ccC
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR-SGA 793 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~~~ 793 (958)
.++..+|....+..|++........|+++|.||||++++|+=.++|+.+.++.+. +|+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCce
Confidence 4577899999999998875556678999999999999999999999988777654 444
No 453
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.15 E-value=0.5 Score=53.31 Aligned_cols=87 Identities=18% Similarity=0.384 Sum_probs=46.7
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
|..|.+.++. .|.+||.+++ ..+++.. ..+..+.||+||+.+++.
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v---------------~~vk~V~Ws~~g~~val~----- 162 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRIDV---------------SAVKYVIWSDDGELVALV----- 162 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE-----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEEec---------------CCCcEEEEECCCCEEEEE-----
Confidence 8888777632 5999999854 4444432 124678999999999985
Q ss_pred CCCcccccccCCeEEEEeC--C-----CCCCC--CceEEEeeccccCceeeecCCceEEEEE
Q 002164 422 GGDAKVEVTPRDIIYTQQA--E-----PVQGE--GPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~--~-----~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
..+.+|+++. + +.+|- ....+......+.+..|-.| .++|+.
T Consensus 163 ---------t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 163 ---------TKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ---------eCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 2334565553 0 00111 22333443667778888766 667764
No 454
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.08 E-value=0.078 Score=60.02 Aligned_cols=112 Identities=10% Similarity=0.103 Sum_probs=67.2
Q ss_pred eEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 315 QLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 315 ~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
.|-++|+ .+ ..+.|+.+ ..+.++.|+|=|.+.+-.+. +.++-+||...+.....
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-------------dtd~~iwD~Rk~Gc~~~---------- 149 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST-------------DTDLKIWDIRKKGCSHT---------- 149 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc-------------cccceehhhhccCceee----------
Confidence 4667777 44 56777777 77788899999988854442 34788898873322111
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
+++....++.+.|+|||++++-- ++.+.+-+||+ ..|+-..........+..+.|.|-
T Consensus 150 --~~s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 150 --YKSHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred --ecCCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCch
Confidence 11222456788999999987651 33456777875 233322233334445555555554
No 455
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=94.08 E-value=0.2 Score=53.59 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 697 ~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
|..........|.++|+-|+-+|- .-| +.....-+....|+...+++..++ -...++.++|+|+|+-+--.+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvds---LRY---fW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDS---LRY---FWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeeh---hhh---hhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHH
Confidence 444555677789999999998433 222 122222357788888999888775 234699999999999876655
Q ss_pred HHhCCC
Q 002164 777 LAHAPH 782 (958)
Q Consensus 777 a~~~p~ 782 (958)
-.+-|.
T Consensus 344 ~n~L~~ 349 (456)
T COG3946 344 YNRLPP 349 (456)
T ss_pred HHhCCH
Confidence 555544
No 456
>PRK13614 lipoprotein LpqB; Provisional
Probab=94.06 E-value=3.2 Score=48.26 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=79.7
Q ss_pred eEEEEEcCCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCccc
Q 002164 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~ 393 (958)
.||.....+..+.+......+.+.|+++| ++....+.. ++.+..+.-++. ....... . ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~---~---~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPT---V---TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccc---e---eec
Confidence 46666655555555555567899999998 776554321 123433333221 1000000 0 000
Q ss_pred cccccc-CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-----ccccCceeeecCC
Q 002164 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (958)
Q Consensus 394 ~~~~~~-~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~spDg 467 (958)
...... .+..+..|+||-++++.++. +...+|++.-+.-...+.++.|+.. .....++.|..++
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 011112 26789999999999997543 2233455433211234455566332 2456778999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..++.....+ .+..++++.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8666554333 3356777777554
No 457
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=7.6 Score=47.41 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
..|||.+.+++..+.............+++++.++. .......+.. .+..+.|+|.|+.|+|...
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLHPPEYEGS---KIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-cccCcccCCC---eeEEEEEcCCCCEEEEEEe
Confidence 778999999997653211112224455666666666 1111111111 1567889999988888843
No 458
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.31 Score=48.68 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=35.3
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+.++..++|.++| ......+-+... |..+++ ++ .||.-...-....+.++|.+-|++.
T Consensus 309 ~ivv~A~~D~Yip--r~gv~~lQ~~WP--g~eVr~--~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIP--RTGVRSLQEIWP--GCEVRY--LE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCcccc--ccCcHHHHHhCC--CCEEEE--ee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 5677899999997 543444444332 445554 44 4896433333456667788887774
No 459
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.54 E-value=2.5 Score=49.19 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=36.6
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-Ccee--eccCCCCccccc-cccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~--~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (958)
+.....|+|.++| +|..+.+ +....|.++..++ ++.. .........+.. .|..+..|+||-+++..
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi 451 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVI 451 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEE
Confidence 3468899999999 6665432 1223666655432 2211 000000111111 27799999999888876
No 460
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.48 E-value=1.2 Score=50.76 Aligned_cols=29 Identities=0% Similarity=-0.110 Sum_probs=19.8
Q ss_pred eeecCCCccccccccCCCCcEEEEEeecC
Q 002164 325 VKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 325 ~~~l~~~~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
+..+..+-.+....|+++|..|++-.+..
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCcc
Confidence 33333333456789999999999887553
No 461
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=93.43 E-value=3 Score=47.66 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=106.2
Q ss_pred cCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceee
Q 002164 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (958)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w 196 (958)
+-|+..++|... ..-|+..|.+++..+..+.+..++- ...++.+.++.+|.... +.. .+.+++ ..+..+..
T Consensus 78 ~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~--~l~gH~--asVWAv~~ 148 (745)
T KOG0301|consen 78 GMDTTIIVFKLS-QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVY--SLQGHT--ASVWAVAS 148 (745)
T ss_pred cccceEEEEecC-CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhc--ccCCcc--hheeeeee
Confidence 444444444433 4677888999999998888766654 34466678899998722 111 233332 45666666
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (958)
-|+++. +. +.....|++|. +|+..+........ +..++..|++..|-+.
T Consensus 149 l~e~~~-vT---------gsaDKtIklWk--~~~~l~tf~gHtD~----VRgL~vl~~~~flScs--------------- 197 (745)
T KOG0301|consen 149 LPENTY-VT---------GSADKTIKLWK--GGTLLKTFSGHTDC----VRGLAVLDDSHFLSCS--------------- 197 (745)
T ss_pred cCCCcE-Ee---------ccCcceeeecc--CCchhhhhccchhh----eeeeEEecCCCeEeec---------------
Confidence 777732 22 33466788887 45555555544443 7788999988766654
Q ss_pred CCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCCC-ccccccccCCCCcEEEEEeecCC
Q 002164 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRP 354 (958)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~ 354 (958)
..+.|..++++|+ ....... ..+++++..+++..|+.+..+
T Consensus 198 -----------------------------------NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED-- 240 (745)
T KOG0301|consen 198 -----------------------------------NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED-- 240 (745)
T ss_pred -----------------------------------CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC--
Confidence 2345667777554 3344333 556677767777777776643
Q ss_pred ccccccCCCCCceeEEEecc
Q 002164 355 YSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 355 ~~~~~~~~~~~~~i~l~d~~ 374 (958)
+.+.+|+.+
T Consensus 241 -----------rtlriW~~~ 249 (745)
T KOG0301|consen 241 -----------RTLRIWKKD 249 (745)
T ss_pred -----------ceEEEeecC
Confidence 489999877
No 462
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=0.35 Score=51.31 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCceeEEEEecc
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----PHLFCCGIARSG 792 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----p~~~~a~v~~~~ 792 (958)
.+-..+++..+.+|.+...+ ++|.|+.||||.++++.++-+ . +..|+-+|..+|
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaP 232 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAP 232 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCC
Confidence 45577888999999988654 589999999999999876643 2 234666677666
No 463
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=3.1 Score=41.72 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEecc
Q 002164 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSG 792 (958)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~ 792 (958)
..+..-++++.+.- ....||.++|||-|++|.+.++-.... .+..+++.-|
T Consensus 93 ~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 93 DQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred hHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 33455566666642 234699999999999999999874322 2444554444
No 464
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.17 E-value=0.34 Score=51.08 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CC------cEEEEc
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RG------FAILGG 718 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G------~~vl~~ 718 (958)
.|.++|-....|+.-+ .++..+|++| +||+|...+ .|. .+...|.. +| |-|++
T Consensus 132 eGL~iHFlhvk~p~~k-~~k~v~PlLl-~HGwPGsv~-----------EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKK-KKKKVKPLLL-LHGWPGSVR-----------EFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCccc-cCCcccceEE-ecCCCchHH-----------HHH----hhhhhhcCccccCCccceeEEEec-
Confidence 6788888888887532 3334567655 899874321 111 11212322 12 67787
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
....|||-+.+....+-..++ +..+++- +...++ ++.+|-|.-+|..++..+|..+|+.+.+.-+
T Consensus 194 --PSlPGygwSd~~sk~GFn~~a-~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAAA-TARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred --cCCCCcccCcCCccCCccHHH-HHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 455788887665322212211 1222222 334444 6999999999999999999999998876644
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=11 Score=42.89 Aligned_cols=199 Identities=12% Similarity=0.137 Sum_probs=114.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+-.+.+.|---|++-.-- +++|-+|+-++....+-....+.. +....|-+--.+|+..+
T Consensus 15 RVKsVd~HPtePw~la~Ly---------nG~V~IWnyetqtmVksfeV~~~P----vRa~kfiaRknWiv~Gs------- 74 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY---------NGDVQIWNYETQTMVKSFEVSEVP----VRAAKFIARKNWIVTGS------- 74 (794)
T ss_pred ceeeeecCCCCceEEEeee---------cCeeEEEecccceeeeeeeecccc----hhhheeeeccceEEEec-------
Confidence 5666777887788876442 445555555554443322222222 55777777777888661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
...+|-+++. +++ ++.+..+ +.++.++.+|.--++
T Consensus 75 ------------------------------------------DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 75 ------------------------------------------DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ------------------------------------------CCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence 1245667777 664 4444444 778899999998888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+.++++. .|.+|+-+++ ...+. |.++...+-.++|.|....-...
T Consensus 113 LtsSDDm-------------~iKlW~we~~wa~~qt------------feGH~HyVMqv~fnPkD~ntFaS--------- 158 (794)
T KOG0276|consen 113 LTSSDDM-------------TIKLWDWENEWACEQT------------FEGHEHYVMQVAFNPKDPNTFAS--------- 158 (794)
T ss_pred EecCCcc-------------EEEEeeccCceeeeeE------------EcCcceEEEEEEecCCCccceee---------
Confidence 8777553 5666766543 22221 12333455677888854433221
Q ss_pred ccccccCCeEEEEeCCCCCC-CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.+-+..|-+|.+ .. -..-.|..+...+..+.|-+-|.+-+..+..+..-..+|.+..++
T Consensus 159 ---~sLDrTVKVWsl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 159 ---ASLDRTVKVWSL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ---eeccccEEEEEc---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 133456777775 22 223455666666777888776654444333333336677665443
No 466
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=92.95 E-value=18 Score=40.18 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred EEEEEc-C-C-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccC
Q 002164 316 LVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDI 390 (958)
Q Consensus 316 l~~~~~-~-g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~ 390 (958)
+..++. . + ....+... ..+..+.|+|+++.++.... ..+.+.+|++..+ ....+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------- 196 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAG------- 196 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeecc-------
Confidence 555555 3 2 33334333 56678999999996665542 1348899998853 2233222
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE--EEeeccccCceeeecCCc
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSL 468 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~--l~~~~~~~~~~~~spDg~ 468 (958)
....+..+.|+|+|+.++.. .+....+.+|+. ..+.... +....... ...|+|++.
T Consensus 197 ------~~~~v~~~~~~~~~~~~~~~------------~~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 197 ------HTDPVSSLAFSPDGGLLIAS------------GSSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred ------CCCceEEEEEcCCcceEEEE------------ecCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCCC
Confidence 11345778999999833221 022334556664 2222222 22222221 127999996
Q ss_pred eEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 469 ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
.++.. ..+. ..++|.+.... . ...........+.. ..|+|++..++..
T Consensus 255 ~~~~~-~~d~-~~~~~~~~~~~--~-~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 255 LLASG-SSDG-TIRLWDLRSSS--S-LLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred EEEEe-cCCC-cEEEeeecCCC--c-EEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 55522 2222 24555444333 1 11222122222222 5688888777763
No 467
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.82 E-value=9.5 Score=44.35 Aligned_cols=140 Identities=10% Similarity=0.014 Sum_probs=77.2
Q ss_pred EEEEEcCCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccc
Q 002164 316 LVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 316 l~~~~~~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~ 394 (958)
|++-...+..+.+........+.|+++| ++....+.. ...+.... .+....+. .+...
T Consensus 357 l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~-v~~~~------ 415 (557)
T PRK13615 357 WSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVA-VSWTA------ 415 (557)
T ss_pred EEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEee-ccccC------
Confidence 4433334455555554567899999999 776554321 12222221 12222221 11111
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-Ee------eccccCceeeecCC
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDS 467 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~------~~~~~~~~~~spDg 467 (958)
...+..+..|+||-++++.++. ....+|++.-+.- +++.++.| +. ......++.|..++
T Consensus 416 ---~~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 416 ---TGRVVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred ---CCeeEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 1246789999999999997553 2334565543322 34444455 22 22356678999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+..+.....+ ....++++.+++.
T Consensus 482 ~laVl~~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTLAPD-GERQVELHQVGGP 504 (557)
T ss_pred EEEEEeccCC-CCceEEEEECCCc
Confidence 8655553333 3356888888874
No 468
>PLN02209 serine carboxypeptidase
Probab=92.65 E-value=0.64 Score=52.51 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=80.4
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcC-----c---HHHHHHHHC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG-----S---TSVLLWLAR 711 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~la~~ 711 (958)
-.+.+....+..+..+++.... ++. ..|+|+++-|||.++...+.....+|-....-. . .-...|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3455554456677777775432 222 379999999999887655444444443332110 0 001123443
Q ss_pred CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHh----C----
Q 002164 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~----~---- 780 (958)
- .++.+|..-..|+....... ..-....+|+..++....+ .+.....++.|+|.||||..+-.+|.. .
T Consensus 118 a-nllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 A-NIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred C-cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 3 34443433334443321111 1112334566666554433 444455689999999999866555542 1
Q ss_pred -CC-ceeEEEEeccCCC
Q 002164 781 -PH-LFCCGIARSGAYN 795 (958)
Q Consensus 781 -p~-~~~a~v~~~~~~~ 795 (958)
+. -++++++.+|..+
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 11 3678888887654
No 469
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.59 E-value=4.6 Score=44.90 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=25.2
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
..+++++. +++.+.+..+ .....++|+|+|+.++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEE
Confidence 56999998 6666666655 5556889999997643
No 470
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.56 E-value=14 Score=37.93 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=28.5
Q ss_pred cceEEEEEc-CCeeeecCC-CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 313 TTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
...|+.+|. +|+...-.. ...+... ...++..|++... .+.++.+|..+++.
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~-------------~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTS-------------DGSLYALDAKTGKV 98 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEET-------------TSEEEEEETTTSCE
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-eeecccccccccc-------------eeeeEecccCCcce
Confidence 457999998 886543322 2222211 1335566665552 23788888665543
No 471
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.56 E-value=2.9 Score=46.55 Aligned_cols=130 Identities=10% Similarity=0.064 Sum_probs=66.4
Q ss_pred eEEEEEc---CCe---eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE-eccCc-----eEEEe
Q 002164 315 QLVLVSL---DGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW-TTDGI-----FVREL 381 (958)
Q Consensus 315 ~l~~~~~---~g~---~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~-d~~~~-----~~~~l 381 (958)
+|++++. +|. .+.+... .....+++.+|| |+++.. .+|+.+ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 343 2344444 445778899998 555431 156544 44321 22333
Q ss_pred cc-CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC-------cccccccCCeEEEEeCCCCCCCCceEEEe
Q 002164 382 CD-LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD-------AKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (958)
Q Consensus 382 ~~-~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (958)
.. .+.... ........+.|.|||+ |++..-...+.. ........+.+++++. ++++.+.+..
T Consensus 112 ~~~~~~~~~------~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQIN------NHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH 181 (367)
T ss_pred EEccCCCCC------cccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec
Confidence 22 221100 0113356799999995 555321100000 0001122356888884 6666666654
Q ss_pred eccccCceeeecCCceE
Q 002164 454 LDLRYGGISWCDDSLAL 470 (958)
Q Consensus 454 ~~~~~~~~~~spDg~~l 470 (958)
.-.....++|+|+|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 44445679999998653
No 472
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.52 E-value=3.8 Score=47.48 Aligned_cols=98 Identities=7% Similarity=-0.031 Sum_probs=56.4
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
.++++|+||+.+|++... ..+++.... +..+.+. .+...
T Consensus 337 ~s~avS~dg~~~A~v~~~---------------------------------~~l~vg~~~-----~~~~~~~---~~~~L 375 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------------------------------GVWSVGDGD-----RDAVLLD---TRPGL 375 (557)
T ss_pred ccceEcCCCceEEEEcCC---------------------------------ceEEEecCC-----Ccceeec---cCCcc
Confidence 466778888887777532 246665441 2344442 23358
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
..|+|.++| +|....+ ++ ...+.... .+|+...+. .+-. ....|..+..|+||-+++..
T Consensus 376 t~PS~d~~g-~vWtv~~------g~-~~~l~~~~-~~G~~~~v~-v~~~-~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 376 VAPSLDAQG-YVWSTPA------SD-PRGLVAWG-PDGVGHPVA-VSWT-ATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred ccCcCcCCC-CEEEEeC------CC-ceEEEEec-CCCceEEee-cccc-CCCeeEEEEeCCCccEEEEE
Confidence 899999999 6665432 11 22333332 335554432 1110 11237899999999888876
No 473
>PRK13613 lipoprotein LpqB; Provisional
Probab=92.48 E-value=9.1 Score=45.10 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+..++.|+||+.+|++.. ....||+-.+.++.. +.+..... +..+.|.++| +++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5778999999999999742 245788876544332 23332222 5688899888 66644
No 474
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=92.46 E-value=0.31 Score=45.67 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.....+...+..+.++.. +.+|.+.|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 444556666666666543 3699999999999999988875
No 475
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.35 E-value=0.41 Score=45.68 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEecc
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSG 792 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~ 792 (958)
.....+...++....+ ....+|.++|||+||.+|..++..... ....+++.++
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 3444445555544433 234699999999999999998886533 3344444444
No 476
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.25 E-value=15 Score=37.65 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.0
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS 237 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 237 (958)
.+++++|+... ....|+.+|+.+|+..--...
T Consensus 33 ~~~~~~v~~~~---------~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 33 VPDGGRVYVAS---------GDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp EEETTEEEEEE---------TTSEEEEEETTTSEEEEEEEC
T ss_pred EEeCCEEEEEc---------CCCEEEEEECCCCCEEEEeec
Confidence 34677777753 377999999988876544333
No 477
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.13 E-value=8.9 Score=44.65 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=34.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
+-...-|+|.| .|||.+ ..-|.++|.-+-+..+..+.+... +..+.|+|-.
T Consensus 17 N~~A~Dw~~~G-LiAygs----------hslV~VVDs~s~q~iqsie~h~s~----V~~VrWap~~ 67 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS----------HSLVSVVDSRSLQLIQSIELHQSA----VTSVRWAPAP 67 (1062)
T ss_pred cccccccCccc-eEEEec----------CceEEEEehhhhhhhhccccCccc----eeEEEeccCC
Confidence 45678899877 899965 567888887665544444444432 6788998654
No 478
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.06 E-value=15 Score=41.40 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=35.1
Q ss_pred eEEEEEc-CCeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE
Q 002164 315 QLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR 379 (958)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~ 379 (958)
++..++. ++....+... ..+.+.+.||||+.++..+ ++|-+||+++++..
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 125 KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKVLDIETKEVV 177 (541)
T ss_pred eEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEEEEccCceEE
Confidence 4455555 5554444433 5678899999999988776 28999999977653
No 479
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=92.02 E-value=2.3 Score=44.82 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCC--CCCCceeeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d--g~~~~~~~lt~~~~ 187 (958)
-+.++.||.+|++||....+ ....+|.+..- ...-++.++.+.++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD---------------------------------~~~~~W~~de~~~~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDD---------------------------------MHGRVWNVDELMVRKTPKPIGVMEHPH 104 (609)
T ss_pred ccceeeeccCCeEEeecCCc---------------------------------ceeeeechHHHHhhcCCCCceeccCcc
Confidence 37789999999999987664 23456655210 00123445555555
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
..++....|.- |.+.+|.. ....+|...|+++.+...+....... +.+..+.-+|-...++.+
T Consensus 105 ~SNIF~L~F~~-~N~~~~SG--------~~~~~VI~HDiEt~qsi~V~~~~~~~--~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 105 RSNIFSLEFDL-ENRFLYSG--------ERWGTVIKHDIETKQSIYVANENNNR--GDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred ccceEEEEEcc-CCeeEecC--------CCcceeEeeecccceeeeeecccCcc--cceeecccCCCCceEEEE
Confidence 55788888874 56666642 33567788888888776666544321 124455566665555554
No 480
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=91.65 E-value=1.7 Score=48.83 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=82.5
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH---HHHHHCCcEEEE
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV---LLWLARGFAILG 717 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~G~~vl~ 717 (958)
-+.+....+..+..|++.-.. .+.. .|+||++-|||.++.-.+.....+|=+....+.... -.|.+..- ++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aN-iLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEAN-ILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCcccccccc-EEE
Confidence 456665678899988886542 2222 699999999999876554444444432221111000 01222222 222
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH----HhC-----C-Cc
Q 002164 718 GPTTPIIGEGDEEAND---RFVEQLVACAE-AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~-~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (958)
.+..-..|+..+.... .--....+|.. ...+|+.+.+..-.+.+.|.|.||+|..+=.+| ... | =-
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 2222223433322111 11123345544 445677777777778899999999995554444 332 1 13
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
+++.+...|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 788888888755
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.65 E-value=14 Score=41.88 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=62.5
Q ss_pred ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee
Q 002164 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
.+..+ .....++|.|||+.|+.... .++|++++..++..+.+...+... ...-..+.-+++
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~-------------~G~I~~v~~~~~~~~~~~~l~~v~-----~~~ge~GLlgla 85 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERA-------------TGKILRVNPETGEVKVVFTLPEIV-----NDAQHNGLLGLA 85 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEec-------------CCEEEEEeCCCCceeeeecCCcee-----ccCCCCceeeEE
Confidence 34433 55678899999975554431 247888876655444443332110 000125667899
Q ss_pred eecCC------CCceEEEEeccCCCcccccccCCeEEEEeCCCCCC--CCceEE-Eee----ccccCceeeecCCceEEE
Q 002164 406 WRSDK------PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG--EGPEIL-HKL----DLRYGGISWCDDSLALVY 472 (958)
Q Consensus 406 ~spDG------~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~~~~~l-~~~----~~~~~~~~~spDg~~l~~ 472 (958)
++||= .+|++.....++... ......|.++.++.... ...+.| ... ...-..+.|.|||+ |++
T Consensus 86 l~PdF~~~~~n~~lYvsyt~~~~~~~---~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYV 161 (454)
T TIGR03606 86 LHPDFMQEKGNPYVYISYTYKNGDKE---LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYY 161 (454)
T ss_pred ECCCccccCCCcEEEEEEeccCCCCC---ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEE
Confidence 99874 234443222211100 01245676666421111 112333 211 12245689999996 666
Q ss_pred EE
Q 002164 473 ES 474 (958)
Q Consensus 473 ~~ 474 (958)
+.
T Consensus 162 s~ 163 (454)
T TIGR03606 162 TI 163 (454)
T ss_pred EE
Confidence 54
No 482
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=91.59 E-value=0.2 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.6
Q ss_pred CCcEEEEEeChHHHHHHHHHHh
Q 002164 758 PSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877763
No 483
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.50 E-value=30 Score=40.95 Aligned_cols=132 Identities=12% Similarity=0.040 Sum_probs=71.1
Q ss_pred ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeee
Q 002164 327 EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 327 ~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
.+......+.++|.++| ++.......+ ...-+.+..-.+ +...+.. + +..+ ..+..+..
T Consensus 404 ~~~~~~~Lt~PS~d~~g-~vWtvd~~~~---------~~~vl~v~~~~G-~~~~V~~-~-------~l~g--~~I~~lrv 462 (599)
T PRK13613 404 GVTADGRLTSPSWDGRG-DLWVVDRDPA---------DPRLLWLLQGDG-EPVEVRT-P-------ELDG--HRVVAVRV 462 (599)
T ss_pred eeeccCcccCCcCcCCC-CEEEecCCCC---------CceEEEEEcCCC-cEEEeec-c-------ccCC--CEeEEEEE
Confidence 34444567899999998 6665521110 011144444333 3222222 1 1111 14678999
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE------eeccccCceeeecCCceEEEEEeccccc
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH------KLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~------~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
|+||-++++.++. ....+|++--+.....+. ..|+ ..-..+..+.|..++..++...... ..
T Consensus 463 SrDG~RvAvv~~~----------~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~-~~ 530 (599)
T PRK13613 463 ARDGVRVALIVEK----------DGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEG-GV 530 (599)
T ss_pred CCCccEEEEEEec----------CCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEeccCC-CC
Confidence 9999999997553 223344433321112232 3332 2233467889999988666553333 23
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..+|.+.+++.
T Consensus 531 ~~v~~v~vdG~ 541 (599)
T PRK13613 531 QQARYVQVDGS 541 (599)
T ss_pred cceEEEecCCc
Confidence 67999999885
No 484
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=91.24 E-value=0.43 Score=53.37 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHCCcEE----EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002164 703 TSVLLWLARGFAI----LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 703 ~~~~~la~~G~~v----l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
.+.+.|.+.||.. ++.+| |.+ .... .....+..+...|+.+.+.. .++|.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR-----~~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWR-----LSPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chh-----hchh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566788878754 33222 221 1111 12344455566666665542 469999999999999999888
Q ss_pred hCCC------ceeEEEEeccCCC
Q 002164 779 HAPH------LFCCGIARSGAYN 795 (958)
Q Consensus 779 ~~p~------~~~a~v~~~~~~~ 795 (958)
..+. .++..|.+++++.
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCCC
Confidence 7643 4889999987654
No 485
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=91.23 E-value=6.8 Score=39.66 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=66.7
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+...|+|+++++.+.+. .++++|.++... ...++..+.. .+.-..+||....
T Consensus 161 ~ns~~~snd~~~~~~Vgds-------------~~Vf~y~id~~sey~~~~~~a~t~-----------D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS-------------RRVFRYAIDDESEYIENIYEAPTS-----------DHGFYNSFSENDL 216 (344)
T ss_pred eeeeEEcCCCceEEEecCC-------------CcceEEEeCCccceeeeeEecccC-----------CCceeeeeccCcc
Confidence 5678899999999988743 278888877432 2222222211 2223456776665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEE----EeeccccCceeeecCCce-EEEEEeccccceEEEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----HKLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWV 485 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~ 485 (958)
..++. .+.+.+-+||+ ..-+.+ ... ..+++.++...||+-|-- |+|-++ ..+.+-+
T Consensus 217 ~FAv~-------------~Qdg~~~I~DV--R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv 278 (344)
T KOG4532|consen 217 QFAVV-------------FQDGTCAIYDV--RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHV 278 (344)
T ss_pred eEEEE-------------ecCCcEEEEEe--cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEE
Confidence 55542 33445666665 111111 111 235677888999987643 555543 3366888
Q ss_pred EcCCCC
Q 002164 486 ISPGSK 491 (958)
Q Consensus 486 ~~~~~~ 491 (958)
+|+...
T Consensus 279 ~D~R~~ 284 (344)
T KOG4532|consen 279 VDTRNY 284 (344)
T ss_pred EEcccC
Confidence 888775
No 486
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=91.06 E-value=0.93 Score=51.17 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=77.4
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc-----CcH---HHHHHHHCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-----GST---SVLLWLARG 712 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~la~~G 712 (958)
.+.+....+..+..+++...+ ++. ..|+||++-|||.++.-.+.....+|-+.... ... -...|.+..
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 116 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA 116 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC
Confidence 344443346677777776443 222 37999999999987754333333333321100 000 011234433
Q ss_pred cEEEEcCCCCCCCCCCcccchhhH--HHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFV--EQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~--~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----- 780 (958)
.++.+|..-..|+.......... ....+|+..++.. +.+.+..-...+.|+|.|+||..+-.+|.. .
T Consensus 117 -nllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 -NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred -cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 34443432233443221111110 1223555555543 344454455689999999999866655542 1
Q ss_pred C-CceeEEEEeccCCC
Q 002164 781 P-HLFCCGIARSGAYN 795 (958)
Q Consensus 781 p-~~~~a~v~~~~~~~ 795 (958)
+ =-++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 1 13788888888654
No 487
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.06 E-value=6.7 Score=45.20 Aligned_cols=275 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
..+-.+++|++ +...+-||+++-.+|+.+.+.+...... +.....|++..++++.+...+..
T Consensus 40 c~dst~~~l~~---------GsS~G~lyl~~R~~~~~~~~~~~~~~~~---~~~~~vs~~e~lvAagt~~g~V~------ 101 (726)
T KOG3621|consen 40 CVDATEEYLAM---------GSSAGSVYLYNRHTGEMRKLKNEGATGI---TCVRSVSSVEYLVAAGTASGRVS------ 101 (726)
T ss_pred EeecCCceEEE---------ecccceEEEEecCchhhhcccccCccce---EEEEEecchhHhhhhhcCCceEE------
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-----ccccccccCCCCcEEE
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-----AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-----~~~~~~~~SpDGk~l~ 347 (958)
++.++. -+....++.. ..++...||+||++++
T Consensus 102 -----------------------------------------v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y 140 (726)
T KOG3621|consen 102 -----------------------------------------VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY 140 (726)
T ss_pred -----------------------------------------eehhhccCCCcceeeccccccCCceEEEEEecccccEEe
Q ss_pred EEeecCCccccccCCCCCceeEEEeccC-----ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG-----IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~-----~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+....+ +|.+..++. -..+.|...+.. -+..+-=-..+++
T Consensus 141 sGD~~G-------------kv~~~~L~s~~~~~~~~q~il~~ds~---------------IVQlD~~q~~LLV------- 185 (726)
T KOG3621|consen 141 SGDSQG-------------KVVLTELDSRQAFLSKSQEILSEDSE---------------IVQLDYLQSYLLV------- 185 (726)
T ss_pred ecCCCc-------------eEEEEEechhhhhccccceeeccCcc---------------eEEeecccceehH-------
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeecccc---CceeeecC----CceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDD----SLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---~~~~~spD----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
+.-.+-.+.+. +.++.+++-+.+.+- .+..|-|. .+-.+|.+.-+ .++|.+|..|
T Consensus 186 -------Stl~r~~Lc~t---E~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG---~RlWead~~G----- 247 (726)
T KOG3621|consen 186 -------STLTRCILCQT---EAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG---LRLWEADFAG----- 247 (726)
T ss_pred -------hhhhhhheeec---chhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC---CceEEeecce-----
Q ss_pred EEEeccCCccccCCCCCCceEecc-------------------------CCceEEEEeeeccCCCcEEEEccCCCCCCCC
Q 002164 496 RILFDRSSEDVYSDPGSPMMRRTS-------------------------TGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (958)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~sp-------------------------dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (958)
.++-..-..+....+..|...+-. ++..|+|...+
T Consensus 248 ~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-------------------- 307 (726)
T KOG3621|consen 248 EVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-------------------- 307 (726)
T ss_pred eEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce--------------------
Q ss_pred CCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
||++|...-.+....+.... ..+.+.+|+.|++...+. .++.+.+.+.+.+
T Consensus 308 ---iyv~d~~~~~v~l~se~~~D--------------I~dVs~~~neiFvL~~d~----~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 308 ---IYVFDSNNSQVYLWSEGGHD--------------ILDVSHCGNEIFVLNLDR----GLKVESVASRQRK 358 (726)
T ss_pred ---EEEEEeccceEEEeecCCCc--------------eeEEeecCceEEEEecCC----ceeEEEeehhHHH
No 488
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.79 E-value=14 Score=38.88 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-------------eeccCCCCccccccccceEE
Q 002164 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-------------RPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~lt~~~~~~~~~~~~~~~w 251 (958)
+++...++.+.|.-+|.+||. +++++.+.+..-+...- -..-....-.....+..++|
T Consensus 22 vteadiis~vef~~~Ge~Lat---------GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLAT---------GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred echhcceeeEEeecccceEee---------cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhcee
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-----
Q 002164 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----- 325 (958)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~----- 325 (958)
.+++..-.|. +..++ .+-.||.+.. +-+.
T Consensus 93 ~~~~n~a~FL-------------------lstNd--------------------------ktiKlWKi~er~~k~~~~~~ 127 (433)
T KOG1354|consen 93 LDDGNLAEFL-------------------LSTND--------------------------KTIKLWKIRERGSKKEGYNL 127 (433)
T ss_pred cCCCCccEEE-------------------EecCC--------------------------cceeeeeeeccccccccccc
Q ss_pred ----------------------------eecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 326 ----------------------------KEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 326 ----------------------------~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
+++... ..+.++++..|++.++-...- .|-+|.++
T Consensus 128 ~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL--------------RINLWnle 193 (433)
T KOG1354|consen 128 PEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL--------------RINLWNLE 193 (433)
T ss_pred cccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce--------------eeeecccc
Q ss_pred -CceEEEeccCCccccCcccccccccCcceeeeecC-CCCceEEEEeccCCCcccccccCCeEEEEeC------------
Q 002164 375 -GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPSTLYWAETQDGGDAKVEVTPRDIIYTQQA------------ 440 (958)
Q Consensus 375 -~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD-G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~------------ 440 (958)
...--.|.+ ..|..-.....-+.+..|+|. -..++|. +..+.|.+.|.
T Consensus 194 i~d~sFnIVD-----IKP~nmEeLteVITsaEFhp~~cn~f~YS-------------SSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 194 IIDQSFNIVD-----IKPANMEELTEVITSAEFHPHHCNVFVYS-------------SSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ccCCceeEEE-----ccccCHHHHHHHHhhhccCHhHccEEEEe-------------cCCCcEEEeechhhhhhcchhhh
Q ss_pred --CCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE------------eccCCccc
Q 002164 441 --EPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL------------FDRSSEDV 506 (958)
Q Consensus 441 --~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~ 506 (958)
+|.++....-.+.--..+..+.||+.|++|+.- ..-+ ..||.++.+.+..+..++ .....-+-
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dylt--vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLT--VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccce--eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Q ss_pred cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+. .+||-++.++..++ -.....+++++.|..+..+
T Consensus 333 Fe------c~~sg~~~~v~TGs---------------------y~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 333 FE------CSWSGNDSYVMTGS---------------------YNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred eE------EEEcCCcceEeccc---------------------ccceEEEecCCCCcceeec
No 489
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=90.57 E-value=33 Score=38.30 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=29.5
Q ss_pred eEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 553 ~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
.|+.+|.++|+. +|..... ......+....+..+++... ...+|.++..+|+...
T Consensus 290 ~l~~~d~~tG~~--~W~~~~~----------~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGSE--LWKNDEL----------KYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCcE--EEccccc----------cCCccccCEEECCEEEEEeC----CCEEEEEECCCCCEEE
Confidence 589999988864 4443210 00000111223555555433 2468999988887653
No 490
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=90.52 E-value=40 Score=39.27 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=37.6
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA 231 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (958)
.+++|++.... .++..+. ....+....++|....++.. +-.+++|.+||+..+..
T Consensus 223 ~~~vW~~~~p~--~Pe~~~~---~~s~v~~~~f~p~~p~ll~g--------G~y~GqV~lWD~~~~~~ 277 (555)
T KOG1587|consen 223 VLLVWSLKNPN--TPELVLE---SPSEVTCLKFCPFDPNLLAG--------GCYNGQVVLWDLRKGSD 277 (555)
T ss_pred eEEEEecCCCC--CceEEEe---cCCceeEEEeccCCcceEEe--------eccCceEEEEEccCCCC
Confidence 58999996532 3343332 12357888999987777774 44678999999887654
No 491
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.44 E-value=14 Score=40.39 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=40.0
Q ss_pred cceeeeecCCCCceEEEEeccCCC---cccccccCCeEEEEeCCCCCCC-------------CceEEEeeccccCceeee
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGD---AKVEVTPRDIIYTQQAEPVQGE-------------GPEILHKLDLRYGGISWC 464 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~g~-------------~~~~l~~~~~~~~~~~~s 464 (958)
...+.|.||| .|++. ..+.+. ........+.|++++. +|. .......+-.....++|.
T Consensus 116 g~~l~fgpDG-~LYvs--~G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d 189 (331)
T PF07995_consen 116 GGGLAFGPDG-KLYVS--VGDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFD 189 (331)
T ss_dssp EEEEEE-TTS-EEEEE--EB-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEE
T ss_pred CccccCCCCC-cEEEE--eCCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEE
Confidence 3569999999 55554 222222 1111234567888884 443 233334444445568999
Q ss_pred cCCceEEEEEeccccceEEEEEc
Q 002164 465 DDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
|....|+...+.....-+|.++.
T Consensus 190 ~~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 190 PNTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCCcEEEEccCCCCCcEEEEec
Confidence 98444444433222235566664
No 492
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.42 E-value=22 Score=40.20 Aligned_cols=141 Identities=10% Similarity=0.036 Sum_probs=83.5
Q ss_pred cceEEEEEc-CCeee-ecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc
Q 002164 313 TTQLVLVSL-DGTVK-EIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~-~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~ 387 (958)
.+.++++++ .|+.+ .+..+ +.+....|+.+-..|+-... +..+..|+........+...
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a-------------d~~v~~~~~~~~~~~~~~~~--- 142 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA-------------DLKVVYILEKEKVIIRIWKE--- 142 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC-------------ceeEEEEecccceeeeeecc---
Confidence 456889998 77544 44433 55666666666555554442 23677777776554443321
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spD 466 (958)
....+.++..+|||+.++.. ..+|-+++. +.++ ....+.+...++.+.|.-+
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~a---------------s~~ik~~~~---~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTA---------------SRQIKVLDI---ETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEec---------------cceEEEEEc---cCceEEEEecCCCcceEEEEEEEe
Confidence 11345688999999887752 345677775 3333 3444666667777777766
Q ss_pred -----CceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 467 -----SLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 467 -----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
|++++.....+ +...+|+++-.....+...
T Consensus 196 ~~g~~G~~vLssa~~~-r~i~~w~v~~~~kkks~~~ 230 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAE-RGITVWVVEKEDKKKSLSC 230 (541)
T ss_pred ccccccceeeeccccc-cceeEEEEEcccccchhhe
Confidence 66655443322 3467888887554333333
No 493
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=90.35 E-value=3.3 Score=44.24 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=58.9
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.......||+|+.||.+...+ ...+.+..++. .+.+...... .....+.+-.+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-------------~~~~f~~~~~~~~~kl~~~~~v~-----------~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-------------QRAVFDYRENPKGAKLLDVSCVP-----------KRPTAISFIRED 119 (390)
T ss_pred cccccccCCCceEEEEEeCCC-------------ceEEEEEecCCCcceeeeEeecc-----------cCcceeeeeecc
Confidence 345667788888888776432 44444444322 2222221111 223455565555
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
..+.+. ...+.+|.++.-....+..+.+..+-..+..++||||++.|+++ ++++ +|++...
T Consensus 120 ~sv~v~-------------dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~Iita-DRDE---kIRvs~y 180 (390)
T KOG3914|consen 120 TSVLVA-------------DKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITA-DRDE---KIRVSRY 180 (390)
T ss_pred ceEEEE-------------eecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEe-cCCc---eEEEEec
Confidence 555442 22333444442001214444555555566789999999888876 3333 3555443
No 494
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.27 E-value=16 Score=41.58 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=80.9
Q ss_pred cceEEEEEc-CCeeeecCCC---ccccccccCCC-CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc--CC
Q 002164 313 TTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LP 385 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~--~~ 385 (958)
..+|.++.. .++...|.-- .......||-. ...|..+...-+. .++..-+.-+|++..++.+++.. .+
T Consensus 183 raNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~-----~g~~~~d~ciYE~~r~klqrvsvtsip 257 (545)
T PF11768_consen 183 RANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV-----KGEPSADSCIYECSRNKLQRVSVTSIP 257 (545)
T ss_pred hccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC-----CCCceeEEEEEEeecCceeEEEEEEEe
Confidence 346778887 4455555421 34456677773 3444433322110 11122245567776665655432 22
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp 465 (958)
.. ..+...+++|+.+++++- -.++.|.++|. ....+..+........++|.|
T Consensus 258 L~-----------s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 258 LP-----------SQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHP 309 (545)
T ss_pred cC-----------CcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcC
Confidence 22 345678999999998883 34667888884 334455555555566789999
Q ss_pred CCceEEEEEeccccceEEEEEcC
Q 002164 466 DSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|..++..+.++. .++|.+.+
T Consensus 310 ~gai~~V~s~qGe--lQ~FD~AL 330 (545)
T PF11768_consen 310 DGAIFVVGSEQGE--LQCFDMAL 330 (545)
T ss_pred CCcEEEEEcCCce--EEEEEeec
Confidence 9998887754433 44444433
No 495
>PF03283 PAE: Pectinacetylesterase
Probab=90.09 E-value=0.45 Score=52.17 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
-+.+++++|.+++.-++++|.|.|.|+||+-++.-+-
T Consensus 139 i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 139 ILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 3568999999998888999999999999999886543
No 496
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.95 E-value=26 Score=36.27 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=26.4
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~ 380 (958)
+.+....|-.-|+.++..+= +....+||++++++..
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSW-------------DRTAnlwDVEtge~v~ 308 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASW-------------DRTANLWDVETGEVVN 308 (481)
T ss_pred cceEehhhhcCcceeeeeec-------------cccceeeeeccCceec
Confidence 55566778888999887762 3467789999776544
No 497
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=89.85 E-value=3 Score=41.71 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.7
Q ss_pred CcEEEEEeChHHHHHHHHHHh---CCCceeEEEEecc
Q 002164 759 SKIAVGGHSYGAFMTANLLAH---APHLFCCGIARSG 792 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~~ 792 (958)
.++.++|||+||.++..++.+ .+..+..++....
T Consensus 64 ~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 64 RPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 578999999999999888875 3345666665543
No 498
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=89.78 E-value=2.3 Score=41.29 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=48.5
Q ss_pred CcEEEEcCCCCCC-CCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 712 GFAILGGPTTPII-GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 712 G~~vl~~~~~~~~-G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
.-+++..-.++.+ +.........+......++.+.++-|.... ....++.++|||||+.++..++...+..+.-+|.+
T Consensus 62 ~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~ 140 (177)
T PF06259_consen 62 SVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLV 140 (177)
T ss_pred CeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEE
Confidence 4566664333444 222222334444555666666666666654 34568999999999999998887744455555554
Q ss_pred c
Q 002164 791 S 791 (958)
Q Consensus 791 ~ 791 (958)
.
T Consensus 141 G 141 (177)
T PF06259_consen 141 G 141 (177)
T ss_pred C
Confidence 3
No 499
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=89.54 E-value=9.7 Score=41.10 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=74.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
+.-..++...|..|+.+ +.-..|+.++.++|.+..++...++.--...+.+...++| .|+|+...
T Consensus 116 RPLGl~f~~~ggdL~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSS----- 180 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSS----- 180 (376)
T ss_pred CcceEEeccCCCeEEEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEeccc-----
Confidence 45556788888666653 2466899999999998888765443211113456666755 55555110
Q ss_pred CCCCCCCCCCceeeecCCcccccchh-hhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTF-QDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~-~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
..++.|.+ .+.+..+ ..++|+.||. +.+.+.|.++ .....++.|||+.++
T Consensus 181 ------------------sk~~~rd~~~a~l~g~---------~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 181 ------------------SKYDRRDFVFAALEGD---------PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred ------------------cccchhheEEeeecCC---------CccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 01111110 1111111 3567999998 7777777766 666788999999999
Q ss_pred EEEeec
Q 002164 347 LISSIH 352 (958)
Q Consensus 347 ~~~~~~ 352 (958)
+|....
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 998643
No 500
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=89.38 E-value=0.38 Score=50.54 Aligned_cols=133 Identities=15% Similarity=0.175 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec-cCCCCCC------CCCC--cccccch
Q 002164 740 VACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG--FQNEDRT 809 (958)
Q Consensus 740 ~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~--~~~~~~~ 809 (958)
+..+..|++-..+. ..+.-++..|.|.|--|+.+...|..+|+ +.++|..+ -..+... ..++ +......
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~p 292 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAP 292 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccch
Confidence 34444555544332 23444689999999999999999999965 55555432 1111100 0000 0000000
Q ss_pred h--------hhcH---HHHHhcCccccc-----CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 810 L--------WEAT---STYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 810 ~--------~~~~---~~~~~~sp~~~~-----~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
. .+.+ ....-.+|+.+. .++..|-+|+.+..|...+ ++.+.-+|..|... +-+...|+.
T Consensus 293 yyaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~ 367 (507)
T COG4287 293 YYAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPND 367 (507)
T ss_pred hHhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCC
Confidence 1 1111 112223565554 5677899999999999987 88888888888764 678889999
Q ss_pred CccCC
Q 002164 874 SHGYA 878 (958)
Q Consensus 874 ~H~~~ 878 (958)
.|...
T Consensus 368 ~H~~~ 372 (507)
T COG4287 368 PHNLI 372 (507)
T ss_pred cchhh
Confidence 99874
Done!