Query 002165
Match_columns 957
No_of_seqs 778 out of 3983
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 17:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 7E-118 2E-122 987.8 38.6 589 19-704 257-895 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 8E-117 2E-121 995.9 45.7 572 17-687 41-652 (674)
3 KOG0925 mRNA splicing factor A 100.0 5E-117 1E-121 951.9 37.9 586 21-709 41-684 (699)
4 KOG0924 mRNA splicing factor A 100.0 4E-113 9E-118 949.5 39.9 580 19-696 348-977 (1042)
5 PRK11131 ATP-dependent RNA hel 100.0 3E-99 6E-104 931.6 55.4 583 22-687 69-682 (1294)
6 KOG0920 ATP-dependent RNA heli 100.0 1.7E-99 4E-104 899.4 46.1 555 20-634 166-737 (924)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.5E-95 1.2E-99 897.5 53.1 580 22-687 62-672 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 4.2E-95 9E-100 867.9 50.0 537 16-634 39-589 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 5.3E-91 1.1E-95 784.5 37.7 575 18-687 247-1008(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.6E-77 7.8E-82 726.2 47.2 440 26-520 1-445 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.6E-74 3.6E-79 704.8 48.1 440 24-518 2-448 (812)
12 KOG0921 Dosage compensation co 100.0 5.1E-56 1.1E-60 506.2 22.5 556 21-633 372-965 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.6E-53 3.4E-58 507.9 34.2 395 30-501 167-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 1E-37 2.3E-42 382.3 43.5 419 26-504 21-494 (674)
15 PRK02362 ski2-like helicase; P 100.0 5.7E-36 1.2E-40 369.5 44.5 425 27-502 23-514 (737)
16 KOG0331 ATP-dependent RNA heli 100.0 8.6E-37 1.9E-41 345.9 26.3 316 28-404 114-451 (519)
17 KOG0330 ATP-dependent RNA heli 100.0 8.4E-37 1.8E-41 324.6 21.7 311 28-402 84-408 (476)
18 PRK00254 ski2-like helicase; P 100.0 9.1E-35 2E-39 358.0 40.4 432 27-516 23-523 (720)
19 PRK11776 ATP-dependent RNA hel 100.0 3.2E-35 7E-40 345.5 32.3 310 28-403 27-351 (460)
20 PRK04837 ATP-dependent RNA hel 100.0 5.3E-35 1.2E-39 340.0 33.1 313 27-403 30-364 (423)
21 PTZ00110 helicase; Provisional 100.0 3.8E-35 8.3E-40 349.1 30.9 313 27-403 152-486 (545)
22 PRK11192 ATP-dependent RNA hel 100.0 1.2E-34 2.7E-39 338.3 33.4 317 27-405 23-356 (434)
23 PRK10590 ATP-dependent RNA hel 100.0 2.3E-34 5E-39 337.2 32.9 312 27-404 23-355 (456)
24 COG0513 SrmB Superfamily II DN 100.0 1E-34 2.3E-39 342.3 30.2 315 26-401 50-380 (513)
25 PLN00206 DEAD-box ATP-dependen 100.0 3.1E-34 6.6E-39 340.3 30.7 312 27-403 143-477 (518)
26 PRK11634 ATP-dependent RNA hel 100.0 5.2E-34 1.1E-38 342.4 32.5 312 26-403 27-354 (629)
27 PRK04537 ATP-dependent RNA hel 100.0 9.2E-34 2E-38 338.4 31.6 313 27-403 31-366 (572)
28 PTZ00424 helicase 45; Provisio 100.0 3.4E-33 7.3E-38 323.2 30.6 315 28-405 51-378 (401)
29 PRK01297 ATP-dependent RNA hel 100.0 8.7E-33 1.9E-37 325.9 32.8 308 28-402 110-443 (475)
30 KOG0345 ATP-dependent RNA heli 100.0 3.1E-33 6.7E-38 303.6 22.3 331 28-418 29-384 (567)
31 KOG0333 U5 snRNP-like RNA heli 100.0 6.4E-33 1.4E-37 304.1 19.3 307 28-402 268-625 (673)
32 KOG0342 ATP-dependent RNA heli 100.0 1.4E-32 3E-37 300.9 21.9 318 26-402 103-438 (543)
33 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-31 2.8E-36 314.9 28.9 308 28-404 12-336 (470)
34 KOG0338 ATP-dependent RNA heli 100.0 6.3E-33 1.4E-37 302.8 15.9 318 27-404 203-536 (691)
35 COG1204 Superfamily II helicas 100.0 1.1E-31 2.3E-36 324.9 25.6 428 27-502 31-526 (766)
36 KOG0340 ATP-dependent RNA heli 100.0 1.5E-31 3.3E-36 281.6 21.5 316 28-404 30-364 (442)
37 PLN03137 ATP-dependent DNA hel 100.0 5.7E-31 1.2E-35 319.4 29.6 305 28-404 461-790 (1195)
38 KOG0343 RNA Helicase [RNA proc 100.0 1E-31 2.2E-36 295.8 20.9 316 26-403 90-424 (758)
39 PRK11057 ATP-dependent DNA hel 100.0 1.1E-30 2.4E-35 315.0 30.6 305 27-404 25-346 (607)
40 KOG0328 Predicted ATP-dependen 100.0 2.8E-31 6.2E-36 271.2 20.4 313 28-405 50-377 (400)
41 TIGR03817 DECH_helic helicase/ 100.0 6.6E-31 1.4E-35 321.5 27.1 319 27-399 36-384 (742)
42 COG1202 Superfamily II helicas 100.0 1.1E-30 2.4E-35 288.7 24.8 433 28-532 217-694 (830)
43 PRK13767 ATP-dependent helicas 100.0 5.2E-30 1.1E-34 319.6 33.6 317 28-397 33-396 (876)
44 KOG0339 ATP-dependent RNA heli 100.0 1.6E-30 3.5E-35 283.5 20.5 313 27-404 245-578 (731)
45 KOG0335 ATP-dependent RNA heli 100.0 1.2E-30 2.6E-35 291.0 18.5 313 26-399 95-442 (482)
46 TIGR01389 recQ ATP-dependent D 100.0 2.7E-29 5.8E-34 303.7 30.9 305 28-404 14-334 (591)
47 KOG0336 ATP-dependent RNA heli 100.0 3.5E-30 7.5E-35 274.4 16.4 314 27-404 242-575 (629)
48 KOG0348 ATP-dependent RNA heli 100.0 1.8E-29 4E-34 277.4 21.7 339 27-406 159-561 (708)
49 COG1111 MPH1 ERCC4-like helica 100.0 1E-28 2.2E-33 272.9 27.0 355 23-401 11-481 (542)
50 KOG0332 ATP-dependent RNA heli 100.0 6E-29 1.3E-33 263.3 22.4 316 28-401 113-443 (477)
51 TIGR00580 mfd transcription-re 100.0 2.3E-28 4.9E-33 301.8 29.5 299 27-400 451-769 (926)
52 KOG0347 RNA helicase [RNA proc 100.0 1.9E-29 4.2E-34 277.9 15.8 325 28-402 204-571 (731)
53 PRK10917 ATP-dependent DNA hel 100.0 6.1E-28 1.3E-32 294.3 29.9 300 26-399 260-587 (681)
54 COG1201 Lhr Lhr-like helicases 100.0 3.8E-28 8.3E-33 290.0 24.6 311 27-398 22-361 (814)
55 TIGR00643 recG ATP-dependent D 100.0 2.4E-27 5.2E-32 287.3 30.2 299 27-399 235-564 (630)
56 KOG0952 DNA/RNA helicase MER3/ 100.0 1.2E-27 2.5E-32 280.7 25.1 445 28-518 111-640 (1230)
57 KOG0341 DEAD-box protein abstr 100.0 2.3E-29 5E-34 266.4 9.5 310 26-401 191-528 (610)
58 KOG0326 ATP-dependent RNA heli 100.0 6.8E-29 1.5E-33 257.6 12.4 311 28-402 108-430 (459)
59 PRK10689 transcription-repair 100.0 2.5E-27 5.4E-32 298.5 29.1 300 26-400 599-918 (1147)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1.5E-27 3.2E-32 271.9 23.2 295 44-402 1-337 (358)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-26 3E-31 278.2 30.2 326 28-424 16-415 (844)
62 PRK09751 putative ATP-dependen 100.0 1.7E-26 3.6E-31 292.1 30.0 303 47-392 1-374 (1490)
63 KOG0350 DEAD-box ATP-dependent 99.9 2.3E-27 5E-32 259.5 18.2 316 27-402 159-541 (620)
64 COG0514 RecQ Superfamily II DN 99.9 1.3E-26 2.7E-31 268.1 22.9 303 30-404 20-340 (590)
65 KOG0354 DEAD-box like helicase 99.9 4.9E-26 1.1E-30 265.6 25.6 351 23-401 58-529 (746)
66 KOG4284 DEAD box protein [Tran 99.9 7.3E-26 1.6E-30 252.9 20.5 315 28-400 48-378 (980)
67 PHA02558 uvsW UvsW helicase; P 99.9 1.3E-24 2.9E-29 257.1 30.6 316 25-393 112-443 (501)
68 KOG0346 RNA helicase [RNA proc 99.9 9.3E-26 2E-30 243.5 16.3 306 28-401 42-410 (569)
69 TIGR03158 cas3_cyano CRISPR-as 99.9 2E-24 4.4E-29 244.8 27.5 312 31-387 1-357 (357)
70 KOG0334 RNA helicase [RNA proc 99.9 1.5E-25 3.2E-30 266.0 18.4 314 27-402 387-721 (997)
71 PRK13766 Hef nuclease; Provisi 99.9 2.2E-24 4.8E-29 269.5 27.9 356 21-402 9-480 (773)
72 KOG0344 ATP-dependent RNA heli 99.9 4.8E-25 1E-29 247.5 18.8 314 29-403 160-497 (593)
73 KOG0948 Nuclear exosomal RNA h 99.9 1.4E-24 3.1E-29 246.4 21.8 347 26-401 128-539 (1041)
74 KOG0327 Translation initiation 99.9 1.7E-24 3.7E-29 232.3 19.7 311 28-406 49-375 (397)
75 KOG0947 Cytoplasmic exosomal R 99.9 3.2E-23 7E-28 240.8 24.7 351 26-400 296-722 (1248)
76 KOG0951 RNA helicase BRR2, DEA 99.9 5.6E-23 1.2E-27 243.8 24.6 418 28-492 310-821 (1674)
77 TIGR00603 rad25 DNA repair hel 99.9 1.1E-22 2.3E-27 242.7 26.2 325 23-402 251-608 (732)
78 KOG0352 ATP-dependent DNA heli 99.9 2.9E-23 6.2E-28 223.0 17.6 318 29-405 22-366 (641)
79 KOG0337 ATP-dependent RNA heli 99.9 1.1E-23 2.4E-28 226.6 14.2 310 28-401 44-368 (529)
80 COG4581 Superfamily II RNA hel 99.9 1.4E-22 3E-27 245.4 24.9 349 24-399 116-535 (1041)
81 PRK09401 reverse gyrase; Revie 99.9 9.9E-23 2.1E-27 257.7 23.6 274 26-358 79-412 (1176)
82 PRK05580 primosome assembly pr 99.9 7E-22 1.5E-26 240.4 24.7 323 24-397 141-545 (679)
83 COG1205 Distinct helicase fami 99.9 7.7E-22 1.7E-26 242.7 24.3 324 23-400 66-421 (851)
84 PRK14701 reverse gyrase; Provi 99.9 8.4E-22 1.8E-26 254.0 25.2 313 27-402 79-457 (1638)
85 TIGR03714 secA2 accessory Sec 99.9 3.6E-21 7.8E-26 229.6 27.3 105 276-402 424-538 (762)
86 COG1200 RecG RecG-like helicas 99.9 6E-21 1.3E-25 220.2 25.4 299 26-400 261-590 (677)
87 COG4098 comFA Superfamily II D 99.9 2.1E-20 4.5E-25 197.2 26.6 301 28-397 98-412 (441)
88 TIGR00595 priA primosomal prot 99.9 1.9E-21 4E-26 228.8 19.3 296 46-396 1-376 (505)
89 PRK09694 helicase Cas3; Provis 99.9 1.5E-20 3.2E-25 230.5 27.1 318 26-389 285-662 (878)
90 KOG0351 ATP-dependent DNA heli 99.9 2.2E-21 4.8E-26 236.9 18.5 313 28-406 265-597 (941)
91 PRK12898 secA preprotein trans 99.9 2.6E-20 5.6E-25 220.0 25.9 103 277-401 474-586 (656)
92 COG1061 SSL2 DNA or RNA helica 99.9 3.8E-20 8.3E-25 215.1 27.0 329 22-390 31-377 (442)
93 PRK09200 preprotein translocas 99.9 1.9E-20 4.2E-25 225.5 24.3 106 276-402 428-542 (790)
94 COG1197 Mfd Transcription-repa 99.9 3E-20 6.5E-25 225.2 24.3 297 29-400 596-912 (1139)
95 TIGR01054 rgy reverse gyrase. 99.9 5.9E-20 1.3E-24 232.9 27.1 275 25-358 76-411 (1171)
96 TIGR00963 secA preprotein tran 99.9 3.4E-20 7.3E-25 220.0 22.9 118 259-402 392-518 (745)
97 PRK11448 hsdR type I restricti 99.8 1.2E-18 2.5E-23 219.7 28.0 348 26-408 412-823 (1123)
98 KOG0950 DNA polymerase theta/e 99.8 1.4E-18 3.1E-23 204.4 20.2 331 26-403 222-613 (1008)
99 KOG0921 Dosage compensation co 99.8 8.1E-21 1.8E-25 219.1 0.6 542 21-629 400-964 (1282)
100 PRK04914 ATP-dependent helicas 99.8 2.3E-17 5E-22 203.8 25.9 106 276-400 493-604 (956)
101 KOG0329 ATP-dependent RNA heli 99.7 9.3E-18 2E-22 170.2 10.7 277 28-401 65-355 (387)
102 COG1203 CRISPR-associated heli 99.7 1.4E-16 3.1E-21 195.9 23.0 315 23-399 191-548 (733)
103 PRK13104 secA preprotein trans 99.7 7.1E-16 1.5E-20 185.8 24.2 126 22-148 75-213 (896)
104 KOG0353 ATP-dependent DNA heli 99.7 5.2E-16 1.1E-20 164.8 18.6 274 28-351 95-391 (695)
105 PF00270 DEAD: DEAD/DEAH box h 99.7 4.3E-16 9.3E-21 157.6 15.3 154 29-186 1-168 (169)
106 PRK12906 secA preprotein trans 99.7 7.8E-16 1.7E-20 184.7 18.8 105 276-401 440-553 (796)
107 KOG0349 Putative DEAD-box RNA 99.7 6.8E-16 1.5E-20 166.6 15.3 296 71-399 289-613 (725)
108 PRK12904 preprotein translocas 99.7 3.4E-15 7.3E-20 179.9 21.9 125 23-148 75-212 (830)
109 COG4096 HsdR Type I site-speci 99.6 1.1E-14 2.5E-19 170.5 22.2 362 24-425 162-572 (875)
110 KOG0949 Predicted helicase, DE 99.6 2.3E-14 5E-19 168.0 24.2 163 26-191 510-684 (1330)
111 cd00268 DEADc DEAD-box helicas 99.6 4.7E-14 1E-18 147.5 16.9 152 28-181 22-186 (203)
112 COG1198 PriA Primosomal protei 99.6 5.5E-14 1.2E-18 168.2 19.1 318 25-396 196-598 (730)
113 TIGR00348 hsdR type I site-spe 99.6 2.1E-13 4.6E-18 166.3 23.9 335 29-393 240-639 (667)
114 PRK13107 preprotein translocas 99.6 1.2E-13 2.6E-18 166.2 20.6 81 257-344 434-514 (908)
115 KOG0953 Mitochondrial RNA heli 99.5 5.1E-14 1.1E-18 157.3 14.9 279 42-401 191-477 (700)
116 PRK12899 secA preprotein trans 99.5 3.9E-13 8.5E-18 162.0 22.1 122 26-148 89-226 (970)
117 PLN03142 Probable chromatin-re 99.5 1E-12 2.3E-17 163.4 23.2 108 276-403 487-601 (1033)
118 COG1110 Reverse gyrase [DNA re 99.5 8.4E-12 1.8E-16 148.6 25.4 270 26-358 81-419 (1187)
119 PF04408 HA2: Helicase associa 99.4 2.6E-13 5.6E-18 125.6 8.1 71 455-531 1-71 (102)
120 cd00046 DEXDc DEAD-like helica 99.4 1.9E-12 4.1E-17 125.2 14.5 134 43-179 1-144 (144)
121 TIGR01407 dinG_rel DnaQ family 99.4 2.6E-11 5.6E-16 152.6 27.0 131 257-397 658-811 (850)
122 smart00487 DEXDc DEAD-like hel 99.4 4.1E-12 8.8E-17 130.7 16.1 155 25-180 6-171 (201)
123 TIGR02562 cas3_yersinia CRISPR 99.4 6.2E-11 1.3E-15 144.2 23.5 250 114-392 563-882 (1110)
124 smart00847 HA2 Helicase associ 99.3 3.7E-12 8E-17 115.7 8.3 85 455-546 1-87 (92)
125 cd00079 HELICc Helicase superf 99.3 1.7E-11 3.7E-16 118.1 11.1 101 276-396 28-130 (131)
126 KOG1123 RNA polymerase II tran 99.3 4E-11 8.7E-16 132.5 14.8 315 27-401 302-653 (776)
127 PF04851 ResIII: Type III rest 99.3 2.1E-11 4.6E-16 124.6 11.0 148 26-180 2-183 (184)
128 TIGR00631 uvrb excinuclease AB 99.3 2.1E-11 4.5E-16 147.5 12.0 110 276-400 442-552 (655)
129 KOG4150 Predicted ATP-dependen 99.2 1.5E-10 3.2E-15 129.3 16.6 304 28-394 287-633 (1034)
130 PF00271 Helicase_C: Helicase 99.2 9.4E-12 2E-16 109.2 4.6 72 301-390 6-78 (78)
131 PRK12900 secA preprotein trans 99.2 8E-11 1.7E-15 142.7 13.7 119 258-402 584-712 (1025)
132 PRK05298 excinuclease ABC subu 99.2 7E-11 1.5E-15 143.9 12.4 110 276-400 446-556 (652)
133 PRK12326 preprotein translocas 99.2 6.7E-10 1.5E-14 131.4 19.4 118 258-400 413-546 (764)
134 PF07652 Flavi_DEAD: Flaviviru 99.2 1.4E-10 2.9E-15 111.4 9.8 131 41-180 3-137 (148)
135 PRK13103 secA preprotein trans 99.1 1.8E-09 3.8E-14 130.9 18.2 125 23-148 76-213 (913)
136 KOG0385 Chromatin remodeling c 99.1 1.2E-08 2.7E-13 118.5 23.7 348 26-404 166-602 (971)
137 KOG0387 Transcription-coupled 99.1 1.6E-08 3.6E-13 118.1 24.3 113 276-404 546-661 (923)
138 PF02399 Herpes_ori_bp: Origin 99.1 2.7E-08 5.8E-13 118.9 26.3 326 41-403 48-390 (824)
139 PRK07246 bifunctional ATP-depe 99.1 3.7E-08 8.1E-13 122.8 28.4 128 256-397 631-780 (820)
140 KOG0951 RNA helicase BRR2, DEA 99.0 1.3E-08 2.7E-13 123.4 20.0 322 29-412 1145-1508(1674)
141 smart00490 HELICc helicase sup 99.0 7E-10 1.5E-14 97.4 6.4 78 292-389 3-81 (82)
142 PRK08074 bifunctional ATP-depe 98.9 2.2E-07 4.7E-12 118.1 28.8 132 257-397 736-890 (928)
143 PRK12903 secA preprotein trans 98.9 2.6E-08 5.7E-13 119.6 18.1 115 258-399 412-537 (925)
144 CHL00122 secA preprotein trans 98.9 1.8E-08 4E-13 121.7 16.6 77 260-344 412-491 (870)
145 COG0556 UvrB Helicase subunit 98.9 2E-08 4.3E-13 113.1 13.0 106 277-397 447-553 (663)
146 PRK14873 primosome assembly pr 98.8 1.3E-07 2.8E-12 114.6 17.6 131 45-188 163-312 (665)
147 COG4889 Predicted helicase [Ge 98.7 2.8E-08 6.1E-13 116.3 10.2 100 278-395 462-578 (1518)
148 KOG0390 DNA repair protein, SN 98.7 1.8E-06 3.9E-11 103.9 25.5 105 281-401 599-707 (776)
149 PRK12902 secA preprotein trans 98.7 4.7E-07 1E-11 109.5 20.3 125 23-148 79-216 (939)
150 KOG0384 Chromodomain-helicase 98.7 4.9E-07 1.1E-11 110.4 18.4 134 274-427 697-835 (1373)
151 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.5E-05 3.2E-10 95.9 30.7 72 276-351 470-556 (636)
152 KOG1000 Chromatin remodeling p 98.5 1.1E-05 2.4E-10 90.4 21.3 74 276-351 492-568 (689)
153 KOG1040 Polyadenylation factor 98.3 2.4E-07 5.2E-12 101.4 3.5 55 734-788 74-129 (325)
154 KOG1677 CCCH-type Zn-finger pr 98.3 3.9E-07 8.6E-12 102.9 4.4 61 732-792 127-205 (332)
155 KOG0392 SNF2 family DNA-depend 98.2 6.6E-05 1.4E-09 92.1 21.0 112 276-402 1340-1455(1549)
156 PF13401 AAA_22: AAA domain; P 98.0 1.1E-05 2.5E-10 77.7 6.4 115 41-178 3-125 (131)
157 KOG0389 SNF2 family DNA-depend 98.0 0.00024 5.2E-09 84.1 17.9 112 276-404 777-891 (941)
158 COG5084 YTH1 Cleavage and poly 98.0 1.5E-05 3.2E-10 85.5 7.4 100 734-843 101-203 (285)
159 PF00176 SNF2_N: SNF2 family N 97.9 7.2E-05 1.6E-09 82.8 12.7 136 41-188 24-181 (299)
160 KOG3702 Nuclear polyadenylated 97.9 1.1E-05 2.5E-10 93.2 6.2 123 736-902 543-666 (681)
161 COG0610 Type I site-specific r 97.9 0.00016 3.6E-09 91.8 16.4 128 44-179 275-413 (962)
162 TIGR00596 rad1 DNA repair prot 97.9 0.0001 2.2E-09 91.2 13.9 79 112-191 6-89 (814)
163 PF00642 zf-CCCH: Zinc finger 97.9 2.9E-06 6.4E-11 58.1 0.3 24 736-759 2-26 (27)
164 PF13604 AAA_30: AAA domain; P 97.9 4.3E-05 9.3E-10 79.6 8.7 121 28-178 2-130 (196)
165 KOG1763 Uncharacterized conser 97.8 4.1E-06 9E-11 87.5 -0.7 56 735-790 90-192 (343)
166 PF00642 zf-CCCH: Zinc finger 97.8 5.1E-06 1.1E-10 56.9 -0.0 26 763-788 2-27 (27)
167 COG5063 CTH1 CCCH-type Zn-fing 97.8 2.2E-05 4.7E-10 82.7 4.2 101 736-837 229-346 (351)
168 PRK12723 flagellar biosynthesi 97.7 0.00031 6.8E-09 80.2 13.7 125 43-191 175-309 (388)
169 PF02562 PhoH: PhoH-like prote 97.7 0.00016 3.4E-09 75.2 9.1 50 27-76 4-57 (205)
170 KOG1492 C3H1-type Zn-finger pr 97.7 1.8E-05 4E-10 79.2 2.1 57 730-788 226-283 (377)
171 smart00356 ZnF_C3H1 zinc finge 97.7 2.7E-05 5.8E-10 53.4 2.1 24 736-759 3-26 (27)
172 PF00448 SRP54: SRP54-type pro 97.6 0.00016 3.4E-09 75.3 8.7 124 43-185 2-131 (196)
173 PRK10875 recD exonuclease V su 97.6 0.00031 6.7E-09 84.9 11.3 136 29-178 154-301 (615)
174 smart00489 DEXDc3 DEAD-like he 97.6 0.0003 6.5E-09 77.8 10.1 34 29-62 10-47 (289)
175 smart00488 DEXDc2 DEAD-like he 97.6 0.0003 6.5E-09 77.8 10.1 34 29-62 10-47 (289)
176 COG1419 FlhF Flagellar GTP-bin 97.6 0.00074 1.6E-08 76.0 13.1 126 42-191 203-335 (407)
177 KOG1492 C3H1-type Zn-finger pr 97.6 3.6E-05 7.7E-10 77.2 2.3 58 737-796 206-264 (377)
178 TIGR01447 recD exodeoxyribonuc 97.6 0.00043 9.2E-09 83.6 11.9 135 30-178 148-295 (586)
179 PRK12901 secA preprotein trans 97.6 0.00036 7.8E-09 86.1 11.2 118 257-399 613-739 (1112)
180 KOG1002 Nucleotide excision re 97.5 0.022 4.7E-07 64.6 23.6 107 278-401 640-749 (791)
181 KOG2494 C3H1-type Zn-finger pr 97.5 3.7E-05 8.1E-10 82.4 1.6 53 736-790 36-95 (331)
182 PF13245 AAA_19: Part of AAA d 97.5 0.00023 5E-09 62.0 6.2 51 38-88 6-62 (76)
183 PRK10536 hypothetical protein; 97.5 0.00028 6E-09 75.4 8.1 53 25-77 57-113 (262)
184 KOG0386 Chromatin remodeling c 97.4 0.00057 1.2E-08 83.0 10.5 110 274-403 724-840 (1157)
185 TIGR01448 recD_rel helicase, p 97.4 0.00069 1.5E-08 84.0 11.5 123 25-178 321-452 (720)
186 KOG1040 Polyadenylation factor 97.4 7.7E-05 1.7E-09 82.0 2.4 91 709-800 76-169 (325)
187 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0015 3.2E-08 81.4 13.7 124 25-178 350-476 (744)
188 PRK14722 flhF flagellar biosyn 97.4 0.00087 1.9E-08 76.0 10.5 122 41-186 136-264 (374)
189 PRK11889 flhF flagellar biosyn 97.3 0.003 6.4E-08 71.4 13.7 125 43-188 242-371 (436)
190 PF09848 DUF2075: Uncharacteri 97.3 0.00094 2E-08 76.2 9.6 92 43-152 2-97 (352)
191 cd00009 AAA The AAA+ (ATPases 97.3 0.0032 7E-08 60.8 12.1 34 32-65 7-42 (151)
192 COG0653 SecA Preprotein transl 97.2 0.0028 6E-08 77.4 13.5 124 23-147 74-210 (822)
193 PRK06526 transposase; Provisio 97.1 0.0012 2.6E-08 71.5 8.2 26 37-62 93-118 (254)
194 smart00356 ZnF_C3H1 zinc finge 97.1 0.00032 6.9E-09 48.0 2.3 25 763-788 3-27 (27)
195 PRK05703 flhF flagellar biosyn 97.1 0.0059 1.3E-07 71.1 14.1 125 42-190 221-353 (424)
196 PRK11747 dinG ATP-dependent DN 97.1 0.0076 1.7E-07 74.8 15.2 129 256-397 518-671 (697)
197 COG5252 Uncharacterized conser 97.1 0.00018 3.8E-09 73.1 0.7 55 734-788 82-175 (299)
198 smart00382 AAA ATPases associa 97.0 0.0018 4E-08 61.9 7.6 36 42-77 2-39 (148)
199 PF06862 DUF1253: Protein of u 97.0 0.067 1.5E-06 61.9 21.2 113 276-405 300-419 (442)
200 KOG1595 CCCH-type Zn-finger pr 97.0 0.00083 1.8E-08 76.9 5.6 54 734-791 233-294 (528)
201 PRK04296 thymidine kinase; Pro 97.0 0.0051 1.1E-07 63.7 11.0 35 42-76 2-38 (190)
202 PRK14974 cell division protein 97.0 0.01 2.2E-07 66.7 13.8 128 43-189 141-276 (336)
203 KOG0391 SNF2 family DNA-depend 96.9 0.0038 8.3E-08 76.6 10.4 112 276-404 1276-1390(1958)
204 PRK13889 conjugal transfer rel 96.9 0.0066 1.4E-07 76.9 13.1 124 25-178 344-470 (988)
205 PF05970 PIF1: PIF1-like helic 96.9 0.0037 8.1E-08 71.6 10.0 57 28-84 2-66 (364)
206 PRK15483 type III restriction- 96.9 0.0054 1.2E-07 76.6 11.5 134 43-181 60-240 (986)
207 COG1199 DinG Rad3-related DNA 96.9 0.013 2.7E-07 72.8 14.9 135 256-397 462-614 (654)
208 PRK12727 flagellar biosynthesi 96.9 0.006 1.3E-07 71.6 11.1 126 40-189 348-479 (559)
209 PF13872 AAA_34: P-loop contai 96.8 0.02 4.3E-07 62.5 14.3 134 43-179 63-220 (303)
210 PF13086 AAA_11: AAA domain; P 96.8 0.0025 5.5E-08 67.4 7.5 63 28-90 2-75 (236)
211 PRK12724 flagellar biosynthesi 96.8 0.0084 1.8E-07 68.7 11.7 122 42-188 223-353 (432)
212 PRK08181 transposase; Validate 96.8 0.012 2.5E-07 64.3 12.1 36 38-73 102-140 (269)
213 PF07517 SecA_DEAD: SecA DEAD- 96.7 0.0047 1E-07 66.9 8.5 123 26-149 74-209 (266)
214 KOG2340 Uncharacterized conser 96.7 0.014 3E-07 66.8 12.0 111 276-403 552-670 (698)
215 PRK13826 Dtr system oriT relax 96.7 0.011 2.3E-07 75.5 12.5 124 25-178 379-505 (1102)
216 PRK14723 flhF flagellar biosyn 96.7 0.015 3.3E-07 71.3 13.4 123 42-188 185-314 (767)
217 KOG0952 DNA/RNA helicase MER3/ 96.6 0.00056 1.2E-08 83.4 0.4 166 24-190 909-1105(1230)
218 PRK12726 flagellar biosynthesi 96.6 0.012 2.5E-07 66.5 10.7 129 41-190 205-338 (407)
219 PRK14721 flhF flagellar biosyn 96.5 0.02 4.4E-07 66.1 12.4 126 41-190 190-322 (420)
220 PF13173 AAA_14: AAA domain 96.5 0.011 2.3E-07 57.1 8.6 26 41-66 1-26 (128)
221 KOG2333 Uncharacterized conser 96.5 0.0016 3.6E-08 73.2 3.3 50 736-785 75-135 (614)
222 PRK06835 DNA replication prote 96.4 0.024 5.2E-07 63.7 11.9 52 137-189 246-298 (329)
223 COG5084 YTH1 Cleavage and poly 96.4 0.0075 1.6E-07 65.1 7.3 77 715-791 109-192 (285)
224 PF14608 zf-CCCH_2: Zinc finge 96.4 0.0018 4E-08 40.4 1.5 11 776-786 8-18 (19)
225 PF14608 zf-CCCH_2: Zinc finge 96.4 0.002 4.4E-08 40.1 1.7 19 739-759 1-19 (19)
226 PRK08727 hypothetical protein; 96.3 0.015 3.2E-07 62.4 9.0 18 43-60 42-59 (233)
227 COG1875 NYN ribonuclease and A 96.3 0.013 2.9E-07 64.7 8.4 132 23-176 224-385 (436)
228 PF05127 Helicase_RecD: Helica 96.2 0.0027 5.8E-08 64.4 2.5 114 46-180 1-124 (177)
229 PF05729 NACHT: NACHT domain 96.2 0.02 4.3E-07 57.1 8.8 51 139-189 83-140 (166)
230 PF13307 Helicase_C_2: Helicas 96.2 0.0056 1.2E-07 62.1 4.5 114 276-393 9-141 (167)
231 PRK05642 DNA replication initi 96.1 0.023 4.9E-07 61.0 9.1 18 43-60 46-63 (234)
232 PRK07003 DNA polymerase III su 96.1 0.024 5.2E-07 69.0 10.1 38 137-176 119-156 (830)
233 PRK08116 hypothetical protein; 96.0 0.071 1.5E-06 58.4 12.8 18 44-61 116-133 (268)
234 PRK07952 DNA replication prote 96.0 0.076 1.6E-06 57.2 12.6 52 137-189 162-214 (244)
235 TIGR02640 gas_vesic_GvpN gas v 96.0 0.022 4.7E-07 62.3 8.5 42 28-69 7-48 (262)
236 COG5063 CTH1 CCCH-type Zn-fing 96.0 0.005 1.1E-07 65.4 3.3 55 734-788 271-338 (351)
237 PRK06893 DNA replication initi 96.0 0.029 6.2E-07 60.0 9.0 47 137-185 91-140 (229)
238 PRK06731 flhF flagellar biosyn 95.9 0.072 1.6E-06 58.2 12.1 127 42-189 75-206 (270)
239 TIGR03015 pepcterm_ATPase puta 95.9 0.024 5.2E-07 61.9 8.6 25 43-67 44-68 (269)
240 PF01695 IstB_IS21: IstB-like 95.9 0.019 4.1E-07 58.8 7.2 36 39-74 44-82 (178)
241 PRK14956 DNA polymerase III su 95.9 0.042 9.1E-07 64.3 10.7 40 137-180 121-160 (484)
242 KOG1802 RNA helicase nonsense 95.9 0.016 3.4E-07 67.9 7.0 63 28-90 411-476 (935)
243 TIGR00376 DNA helicase, putati 95.9 0.033 7.2E-07 68.3 10.2 66 26-91 156-224 (637)
244 TIGR00604 rad3 DNA repair heli 95.9 0.11 2.5E-06 64.8 15.1 96 256-356 505-615 (705)
245 COG1219 ClpX ATP-dependent pro 95.8 0.013 2.8E-07 63.5 5.6 27 121-147 144-172 (408)
246 PRK06995 flhF flagellar biosyn 95.8 0.072 1.6E-06 62.6 12.2 125 41-189 255-386 (484)
247 PTZ00112 origin recognition co 95.8 0.078 1.7E-06 65.2 12.4 40 24-63 755-802 (1164)
248 TIGR02782 TrbB_P P-type conjug 95.8 0.07 1.5E-06 59.4 11.4 89 32-147 121-214 (299)
249 PRK00411 cdc6 cell division co 95.8 0.087 1.9E-06 61.0 12.8 22 43-64 56-77 (394)
250 PF00580 UvrD-helicase: UvrD/R 95.8 0.018 4E-07 63.9 6.9 64 28-93 1-70 (315)
251 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.044 9.6E-07 58.1 9.3 23 41-63 37-59 (226)
252 KOG0388 SNF2 family DNA-depend 95.7 0.048 1E-06 64.3 9.9 112 276-404 1044-1157(1185)
253 COG2804 PulE Type II secretory 95.7 0.028 6E-07 65.2 8.0 98 23-147 237-337 (500)
254 PRK10416 signal recognition pa 95.7 0.11 2.4E-06 58.2 12.7 126 42-185 114-250 (318)
255 TIGR02881 spore_V_K stage V sp 95.7 0.038 8.3E-07 60.2 8.8 17 43-59 43-59 (261)
256 KOG1595 CCCH-type Zn-finger pr 95.6 0.008 1.7E-07 69.1 3.3 50 735-788 199-259 (528)
257 PF05621 TniB: Bacterial TniB 95.6 0.07 1.5E-06 58.5 10.2 54 43-96 62-124 (302)
258 PRK08084 DNA replication initi 95.6 0.037 8E-07 59.4 8.0 19 43-61 46-64 (235)
259 PRK13894 conjugal transfer ATP 95.5 0.073 1.6E-06 59.7 10.5 34 30-63 135-169 (319)
260 PRK14949 DNA polymerase III su 95.5 0.036 7.9E-07 68.8 8.6 45 136-184 118-162 (944)
261 KOG2185 Predicted RNA-processi 95.5 0.0049 1.1E-07 67.8 1.0 25 736-760 139-163 (486)
262 PRK00771 signal recognition pa 95.5 0.073 1.6E-06 62.1 10.6 118 43-181 96-219 (437)
263 PRK07994 DNA polymerase III su 95.5 0.037 8E-07 67.3 8.4 38 136-175 118-155 (647)
264 PHA00729 NTP-binding motif con 95.5 0.045 9.7E-07 57.8 7.9 26 34-59 7-34 (226)
265 PRK12323 DNA polymerase III su 95.4 0.069 1.5E-06 64.3 10.3 39 136-176 123-161 (700)
266 KOG4791 Uncharacterized conser 95.4 0.0044 9.6E-08 69.1 0.2 51 735-788 30-84 (667)
267 PRK14964 DNA polymerase III su 95.4 0.067 1.5E-06 63.1 9.9 39 136-176 115-153 (491)
268 TIGR03499 FlhF flagellar biosy 95.3 0.04 8.7E-07 60.8 7.5 82 42-146 194-281 (282)
269 KOG2185 Predicted RNA-processi 95.3 0.0062 1.4E-07 67.0 1.0 30 753-790 136-165 (486)
270 PRK06921 hypothetical protein; 95.3 0.1 2.2E-06 57.0 10.5 22 41-62 116-137 (266)
271 PRK14961 DNA polymerase III su 95.3 0.064 1.4E-06 61.5 9.3 39 136-176 118-156 (363)
272 TIGR02760 TraI_TIGR conjugativ 95.3 0.13 2.8E-06 70.5 13.5 136 25-178 427-566 (1960)
273 PRK14960 DNA polymerase III su 95.3 0.07 1.5E-06 64.4 9.7 38 136-175 117-154 (702)
274 PRK09111 DNA polymerase III su 95.3 0.088 1.9E-06 63.9 10.7 39 136-176 131-169 (598)
275 cd01130 VirB11-like_ATPase Typ 95.2 0.14 3.1E-06 52.7 10.8 35 29-63 11-46 (186)
276 PRK14958 DNA polymerase III su 95.2 0.1 2.2E-06 62.3 10.7 38 137-176 119-156 (509)
277 TIGR02928 orc1/cdc6 family rep 95.2 0.075 1.6E-06 60.9 9.4 24 445-468 326-349 (365)
278 PHA02244 ATPase-like protein 95.2 0.1 2.3E-06 58.9 10.0 45 24-68 100-145 (383)
279 PRK14957 DNA polymerase III su 95.1 0.11 2.3E-06 62.3 10.7 39 136-176 118-156 (546)
280 PRK09183 transposase/IS protei 95.1 0.16 3.4E-06 55.4 11.1 24 39-62 99-122 (259)
281 PF12340 DUF3638: Protein of u 95.1 0.13 2.8E-06 54.3 9.9 102 24-127 20-144 (229)
282 PRK08691 DNA polymerase III su 95.1 0.14 3E-06 62.3 11.5 39 136-176 118-156 (709)
283 KOG1677 CCCH-type Zn-finger pr 95.1 0.015 3.3E-07 65.8 3.2 55 738-792 87-161 (332)
284 PF00004 AAA: ATPase family as 95.1 0.066 1.4E-06 51.1 7.3 20 45-64 1-20 (132)
285 COG1444 Predicted P-loop ATPas 95.1 0.2 4.3E-06 61.3 12.7 136 25-180 209-357 (758)
286 PHA03333 putative ATPase subun 95.0 0.4 8.7E-06 57.9 14.8 140 41-191 186-344 (752)
287 PRK06645 DNA polymerase III su 95.0 0.089 1.9E-06 62.5 9.5 25 39-63 37-64 (507)
288 COG1484 DnaC DNA replication p 95.0 0.2 4.4E-06 54.4 11.5 115 35-189 98-218 (254)
289 TIGR00064 ftsY signal recognit 95.0 0.2 4.4E-06 54.9 11.6 124 43-185 73-208 (272)
290 PRK13833 conjugal transfer pro 95.0 0.12 2.6E-06 57.8 9.9 47 29-75 130-181 (323)
291 PRK09112 DNA polymerase III su 94.9 0.088 1.9E-06 59.9 8.9 39 136-176 140-178 (351)
292 PRK13851 type IV secretion sys 94.9 0.17 3.7E-06 57.3 11.0 39 38-76 158-197 (344)
293 PRK12377 putative replication 94.9 0.39 8.4E-06 51.9 13.2 34 42-75 101-137 (248)
294 PRK08903 DnaA regulatory inact 94.9 0.12 2.6E-06 55.0 9.4 21 42-62 42-62 (227)
295 PRK08939 primosomal protein Dn 94.9 0.43 9.2E-06 53.3 13.9 111 42-189 156-270 (306)
296 PRK12402 replication factor C 94.9 0.19 4.1E-06 56.7 11.5 34 32-65 24-59 (337)
297 PF00308 Bac_DnaA: Bacterial d 94.8 0.091 2E-06 55.7 8.2 40 137-178 97-139 (219)
298 cd01120 RecA-like_NTPases RecA 94.8 0.14 3E-06 50.6 9.0 23 44-66 1-23 (165)
299 PRK14088 dnaA chromosomal repl 94.8 0.27 5.9E-06 57.8 12.6 17 44-60 132-148 (440)
300 PRK14969 DNA polymerase III su 94.7 0.17 3.7E-06 60.8 11.1 39 136-176 118-156 (527)
301 PRK12422 chromosomal replicati 94.7 0.14 3.1E-06 60.0 10.2 19 43-61 142-160 (445)
302 CHL00181 cbbX CbbX; Provisiona 94.7 0.13 2.9E-06 56.8 9.2 18 43-60 60-77 (287)
303 KOG1803 DNA helicase [Replicat 94.7 0.04 8.7E-07 64.5 5.2 62 28-89 186-250 (649)
304 PRK07764 DNA polymerase III su 94.6 0.099 2.1E-06 65.7 9.0 39 136-176 119-157 (824)
305 PF05496 RuvB_N: Holliday junc 94.6 0.049 1.1E-06 57.1 5.3 16 44-59 52-67 (233)
306 PRK00149 dnaA chromosomal repl 94.5 0.28 6.1E-06 57.9 12.2 19 43-61 149-167 (450)
307 TIGR02788 VirB11 P-type DNA tr 94.5 0.2 4.4E-06 56.0 10.4 25 39-63 141-165 (308)
308 KOG0989 Replication factor C, 94.5 0.11 2.3E-06 56.5 7.6 36 30-65 39-80 (346)
309 KOG2228 Origin recognition com 94.5 0.58 1.3E-05 51.6 13.2 127 41-182 48-184 (408)
310 PRK11331 5-methylcytosine-spec 94.4 0.12 2.6E-06 60.0 8.3 33 30-62 182-214 (459)
311 KOG4791 Uncharacterized conser 94.4 0.043 9.2E-07 61.6 4.5 51 738-790 4-56 (667)
312 PRK14086 dnaA chromosomal repl 94.4 0.45 9.7E-06 57.4 13.4 18 44-61 316-333 (617)
313 PRK14952 DNA polymerase III su 94.4 0.17 3.6E-06 61.3 9.8 39 136-176 117-155 (584)
314 COG1702 PhoH Phosphate starvat 94.3 0.093 2E-06 58.0 6.8 51 26-76 127-181 (348)
315 PRK09087 hypothetical protein; 94.2 0.26 5.6E-06 52.6 9.9 19 42-60 44-62 (226)
316 PTZ00293 thymidine kinase; Pro 94.2 0.19 4.1E-06 52.6 8.6 36 41-76 3-40 (211)
317 TIGR02760 TraI_TIGR conjugativ 94.2 0.2 4.3E-06 68.9 11.1 122 26-178 1018-1149(1960)
318 PRK14712 conjugal transfer nic 94.2 0.3 6.4E-06 64.8 12.1 121 27-178 835-967 (1623)
319 TIGR00362 DnaA chromosomal rep 94.1 0.36 7.8E-06 56.2 11.8 18 43-60 137-154 (405)
320 PLN03025 replication factor C 94.1 0.33 7.2E-06 54.6 11.1 21 43-63 35-55 (319)
321 KOG1805 DNA replication helica 94.1 0.092 2E-06 64.5 6.7 68 24-91 666-736 (1100)
322 PRK14951 DNA polymerase III su 94.0 0.19 4.1E-06 61.1 9.3 39 136-176 123-161 (618)
323 PRK14962 DNA polymerase III su 94.0 0.21 4.5E-06 59.1 9.5 26 38-63 29-57 (472)
324 KOG2373 Predicted mitochondria 93.9 0.018 4E-07 62.7 0.4 27 41-67 272-298 (514)
325 TIGR01650 PD_CobS cobaltochela 93.9 0.48 1E-05 52.9 11.4 38 32-69 54-91 (327)
326 COG0553 HepA Superfamily II DN 93.9 0.16 3.6E-06 64.9 9.1 109 278-403 713-824 (866)
327 PRK14955 DNA polymerase III su 93.8 0.22 4.8E-06 57.8 9.1 26 37-62 30-58 (397)
328 PF13177 DNA_pol3_delta2: DNA 93.8 0.17 3.6E-06 51.0 7.1 42 136-179 101-142 (162)
329 PF01637 Arch_ATPase: Archaeal 93.7 0.14 3.1E-06 53.9 6.9 34 33-66 9-44 (234)
330 PRK07133 DNA polymerase III su 93.7 0.38 8.2E-06 59.2 11.2 37 136-174 117-153 (725)
331 PRK14959 DNA polymerase III su 93.7 0.36 7.9E-06 58.4 10.9 27 36-62 29-58 (624)
332 PRK04841 transcriptional regul 93.7 0.31 6.8E-06 62.8 11.2 35 40-75 30-64 (903)
333 KOG2494 C3H1-type Zn-finger pr 93.6 0.22 4.7E-06 54.2 7.9 58 702-760 29-93 (331)
334 PRK13709 conjugal transfer nic 93.6 0.46 1E-05 63.9 12.6 122 26-178 966-1099(1747)
335 PF00437 T2SE: Type II/IV secr 93.6 0.085 1.8E-06 57.8 5.0 37 39-75 124-162 (270)
336 TIGR02880 cbbX_cfxQ probable R 93.6 0.24 5.2E-06 54.7 8.5 17 43-59 59-75 (284)
337 PHA02533 17 large terminase pr 93.6 1.3 2.7E-05 53.4 15.1 157 24-189 56-220 (534)
338 PHA02544 44 clamp loader, smal 93.6 0.46 1E-05 53.2 10.9 31 33-63 31-64 (316)
339 PRK14950 DNA polymerase III su 93.5 0.18 4E-06 61.4 8.2 27 37-63 30-59 (585)
340 TIGR00678 holB DNA polymerase 93.5 0.43 9.4E-06 49.1 9.9 29 34-62 3-34 (188)
341 TIGR01425 SRP54_euk signal rec 93.5 0.82 1.8E-05 53.1 12.9 128 43-189 101-236 (429)
342 KOG0741 AAA+-type ATPase [Post 93.5 0.44 9.4E-06 55.3 10.3 104 44-183 540-653 (744)
343 PRK10436 hypothetical protein; 93.4 0.26 5.7E-06 58.0 8.8 42 24-65 198-241 (462)
344 cd03115 SRP The signal recogni 93.3 0.41 9E-06 48.5 9.2 121 44-183 2-128 (173)
345 PRK00440 rfc replication facto 93.3 0.64 1.4E-05 51.9 11.6 19 44-62 40-58 (319)
346 PRK14965 DNA polymerase III su 93.3 0.3 6.5E-06 59.4 9.4 39 136-176 118-156 (576)
347 PRK10867 signal recognition pa 93.2 0.39 8.5E-06 56.0 9.8 118 43-179 101-225 (433)
348 PRK14953 DNA polymerase III su 93.2 0.46 9.9E-06 56.5 10.5 37 136-174 118-154 (486)
349 TIGR03345 VI_ClpV1 type VI sec 93.2 0.49 1.1E-05 60.2 11.4 117 44-188 598-727 (852)
350 PF10354 DUF2431: Domain of un 93.1 0.095 2.1E-06 53.0 4.1 126 826-955 2-140 (166)
351 COG2256 MGS1 ATPase related to 93.1 0.26 5.6E-06 55.6 7.7 35 137-179 104-140 (436)
352 PRK08451 DNA polymerase III su 93.0 0.49 1.1E-05 56.5 10.4 39 136-176 116-154 (535)
353 COG5152 Uncharacterized conser 93.0 0.036 7.8E-07 55.3 0.8 27 734-760 138-165 (259)
354 PRK05896 DNA polymerase III su 93.0 0.34 7.4E-06 58.4 9.1 39 136-176 118-156 (605)
355 PRK14948 DNA polymerase III su 93.0 0.29 6.2E-06 59.9 8.7 44 136-183 120-163 (620)
356 KOG1132 Helicase of the DEAD s 92.9 0.18 4E-06 61.5 6.6 38 111-148 220-258 (945)
357 COG2909 MalT ATP-dependent tra 92.9 0.76 1.6E-05 56.5 11.8 35 30-64 22-59 (894)
358 PF01443 Viral_helicase1: Vira 92.9 0.085 1.8E-06 56.1 3.6 22 45-66 1-22 (234)
359 TIGR02533 type_II_gspE general 92.9 0.26 5.7E-06 58.5 7.9 41 24-64 222-264 (486)
360 PRK13900 type IV secretion sys 92.9 0.2 4.3E-06 56.6 6.5 37 38-74 156-193 (332)
361 PF00931 NB-ARC: NB-ARC domain 92.8 0.17 3.6E-06 55.7 5.9 62 33-94 6-76 (287)
362 TIGR03819 heli_sec_ATPase heli 92.8 0.75 1.6E-05 52.1 11.1 34 30-63 165-199 (340)
363 PRK14087 dnaA chromosomal repl 92.8 0.76 1.6E-05 54.2 11.6 17 43-59 142-158 (450)
364 PF03266 NTPase_1: NTPase; In 92.8 0.46 1E-05 48.2 8.5 22 44-65 1-22 (168)
365 PRK04195 replication factor C 92.7 0.73 1.6E-05 55.0 11.5 26 42-67 39-64 (482)
366 COG1474 CDC6 Cdc6-related prot 92.7 0.96 2.1E-05 51.8 11.8 36 24-59 17-59 (366)
367 COG2255 RuvB Holliday junction 92.5 0.2 4.2E-06 54.0 5.5 61 43-147 53-113 (332)
368 PRK05707 DNA polymerase III su 92.5 0.43 9.3E-06 53.8 8.6 35 27-61 3-41 (328)
369 PRK05563 DNA polymerase III su 92.5 0.52 1.1E-05 57.2 9.8 27 136-164 118-144 (559)
370 TIGR02538 type_IV_pilB type IV 92.4 0.3 6.4E-06 59.3 7.7 41 24-64 296-338 (564)
371 PRK14963 DNA polymerase III su 92.4 0.84 1.8E-05 54.5 11.3 38 136-175 115-152 (504)
372 PRK05342 clpX ATP-dependent pr 92.4 0.34 7.3E-06 56.3 7.8 17 43-59 109-125 (412)
373 TIGR02688 conserved hypothetic 92.4 0.26 5.5E-06 56.6 6.5 23 37-59 204-226 (449)
374 PRK14954 DNA polymerase III su 92.3 0.43 9.2E-06 58.2 8.8 34 608-641 548-581 (620)
375 CHL00176 ftsH cell division pr 92.3 1.4 3E-05 54.2 13.1 23 43-65 217-239 (638)
376 COG2805 PilT Tfp pilus assembl 92.2 0.15 3.2E-06 55.4 4.2 25 41-65 124-148 (353)
377 PRK06620 hypothetical protein; 92.2 0.44 9.4E-06 50.4 7.7 18 43-60 45-62 (214)
378 TIGR00959 ffh signal recogniti 92.1 0.99 2.2E-05 52.6 11.2 118 44-180 101-225 (428)
379 PRK14970 DNA polymerase III su 92.1 0.67 1.4E-05 53.2 9.8 29 34-62 28-59 (367)
380 PF13555 AAA_29: P-loop contai 92.0 0.17 3.7E-06 42.1 3.4 21 42-62 23-43 (62)
381 KOG1015 Transcription regulato 92.0 0.42 9.1E-06 58.5 7.9 122 265-401 1131-1277(1567)
382 COG3587 Restriction endonuclea 92.0 0.42 9E-06 58.3 7.9 55 324-396 480-537 (985)
383 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.31 6.7E-06 48.6 6.0 24 39-62 22-45 (157)
384 KOG0745 Putative ATP-dependent 91.9 0.24 5.1E-06 56.1 5.4 17 41-57 225-241 (564)
385 PRK11747 dinG ATP-dependent DN 91.9 0.34 7.3E-06 60.4 7.4 59 26-84 24-94 (697)
386 COG4962 CpaF Flp pilus assembl 91.9 0.32 6.9E-06 54.0 6.4 49 29-77 159-209 (355)
387 TIGR02397 dnaX_nterm DNA polym 91.8 1 2.2E-05 51.3 10.9 27 35-61 26-55 (355)
388 TIGR00604 rad3 DNA repair heli 91.8 0.28 6.1E-06 61.3 6.6 37 27-63 10-50 (705)
389 cd01124 KaiC KaiC is a circadi 91.7 0.68 1.5E-05 47.3 8.4 23 44-66 1-23 (187)
390 TIGR00635 ruvB Holliday juncti 91.6 0.97 2.1E-05 50.3 10.2 31 451-483 270-301 (305)
391 TIGR02785 addA_Gpos recombinat 91.6 0.24 5.3E-06 65.6 6.1 132 28-162 2-140 (1232)
392 cd01129 PulE-GspE PulE/GspE Th 91.4 0.28 6E-06 53.6 5.4 41 25-65 61-103 (264)
393 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.4 0.74 1.6E-05 45.3 7.9 90 39-164 23-114 (144)
394 cd03228 ABCC_MRP_Like The MRP 91.2 0.86 1.9E-05 46.1 8.5 122 39-176 25-151 (171)
395 PRK07471 DNA polymerase III su 91.2 1.6 3.6E-05 49.9 11.6 42 136-179 140-181 (365)
396 COG0470 HolB ATPase involved i 91.2 0.65 1.4E-05 51.9 8.3 39 136-176 108-146 (325)
397 TIGR02524 dot_icm_DotB Dot/Icm 91.2 0.23 4.9E-06 56.7 4.6 29 35-63 126-155 (358)
398 PRK13342 recombination factor 91.2 0.82 1.8E-05 53.4 9.4 19 44-62 38-56 (413)
399 PRK07940 DNA polymerase III su 91.0 0.67 1.5E-05 53.6 8.3 40 136-178 116-155 (394)
400 cd03247 ABCC_cytochrome_bd The 90.7 0.71 1.5E-05 47.1 7.3 25 39-63 25-49 (178)
401 KOG2543 Origin recognition com 90.7 2.7 5.8E-05 47.4 12.0 145 24-182 6-161 (438)
402 cd03239 ABC_SMC_head The struc 90.7 1.6 3.5E-05 44.7 9.8 41 136-177 115-156 (178)
403 PRK08769 DNA polymerase III su 90.6 1.1 2.3E-05 50.4 9.1 41 136-178 112-152 (319)
404 COG0552 FtsY Signal recognitio 90.6 6.5 0.00014 43.8 14.7 130 44-191 141-283 (340)
405 KOG1039 Predicted E3 ubiquitin 90.5 0.22 4.8E-06 55.7 3.6 23 765-788 9-31 (344)
406 KOG4439 RNA polymerase II tran 90.5 0.24 5.3E-06 58.9 4.0 131 12-147 310-473 (901)
407 PRK13341 recombination factor 90.5 0.83 1.8E-05 56.8 8.9 19 44-62 54-72 (725)
408 PRK06647 DNA polymerase III su 90.5 0.81 1.7E-05 55.4 8.6 29 35-63 28-59 (563)
409 PHA03368 DNA packaging termina 90.4 3.4 7.3E-05 50.1 13.3 138 42-191 254-402 (738)
410 PRK00080 ruvB Holliday junctio 90.4 0.46 1E-05 53.7 6.1 31 451-483 291-322 (328)
411 TIGR02858 spore_III_AA stage I 90.4 2.1 4.5E-05 46.9 10.9 33 32-64 98-133 (270)
412 COG1199 DinG Rad3-related DNA 90.3 0.67 1.4E-05 57.6 8.0 58 23-80 11-75 (654)
413 TIGR03689 pup_AAA proteasome A 90.3 0.91 2E-05 54.0 8.6 17 43-59 217-233 (512)
414 PRK14971 DNA polymerase III su 90.2 1.8 3.9E-05 53.1 11.3 25 34-58 28-55 (614)
415 PRK11823 DNA repair protein Ra 90.1 0.52 1.1E-05 55.5 6.4 83 41-147 79-166 (446)
416 KOG0391 SNF2 family DNA-depend 90.1 1.2 2.6E-05 56.0 9.3 116 28-147 616-747 (1958)
417 cd01121 Sms Sms (bacterial rad 90.1 0.83 1.8E-05 52.4 7.8 34 41-74 81-116 (372)
418 cd00544 CobU Adenosylcobinamid 90.0 1 2.2E-05 45.7 7.6 45 45-90 2-46 (169)
419 COG0541 Ffh Signal recognition 90.0 3.3 7.2E-05 47.5 12.2 130 44-190 102-237 (451)
420 COG5152 Uncharacterized conser 90.0 0.11 2.3E-06 52.0 0.5 26 764-789 141-166 (259)
421 PRK07399 DNA polymerase III su 90.0 2.6 5.7E-05 47.2 11.6 52 122-177 110-161 (314)
422 PRK06067 flagellar accessory p 89.9 1 2.2E-05 48.1 8.0 26 41-66 24-49 (234)
423 cd03238 ABC_UvrA The excision 89.9 1.3 2.9E-05 45.2 8.4 25 39-63 18-42 (176)
424 COG0466 Lon ATP-dependent Lon 89.8 1 2.2E-05 54.4 8.4 125 26-180 326-474 (782)
425 cd03222 ABC_RNaseL_inhibitor T 89.7 1 2.2E-05 46.1 7.4 25 38-62 21-45 (177)
426 PRK11034 clpA ATP-dependent Cl 89.7 1 2.2E-05 56.4 8.8 19 44-62 490-508 (758)
427 cd03216 ABC_Carb_Monos_I This 89.6 0.9 1.9E-05 45.7 6.8 126 39-189 23-150 (163)
428 PRK11054 helD DNA helicase IV; 89.5 0.75 1.6E-05 57.0 7.4 66 25-92 194-265 (684)
429 cd03281 ABC_MSH5_euk MutS5 hom 89.5 0.74 1.6E-05 48.6 6.4 21 43-63 30-50 (213)
430 TIGR01241 FtsH_fam ATP-depende 89.4 2.4 5.3E-05 50.7 11.5 24 43-66 89-112 (495)
431 PRK10865 protein disaggregatio 89.4 2.6 5.7E-05 53.8 12.3 16 44-59 600-615 (857)
432 COG1126 GlnQ ABC-type polar am 89.3 0.21 4.6E-06 51.9 2.0 23 39-61 25-47 (240)
433 KOG1763 Uncharacterized conser 89.3 0.12 2.6E-06 55.0 0.2 34 756-790 84-117 (343)
434 cd01131 PilT Pilus retraction 89.3 0.29 6.4E-06 51.0 3.2 21 44-64 3-23 (198)
435 PF14617 CMS1: U3-containing 9 89.2 0.55 1.2E-05 50.5 5.2 78 70-147 128-211 (252)
436 COG2812 DnaX DNA polymerase II 89.2 0.72 1.6E-05 54.6 6.6 41 136-180 118-158 (515)
437 COG1618 Predicted nucleotide k 89.2 2.6 5.6E-05 42.0 9.2 20 44-63 7-26 (179)
438 TIGR02639 ClpA ATP-dependent C 89.1 1.4 3E-05 55.5 9.5 16 44-59 486-501 (731)
439 TIGR01243 CDC48 AAA family ATP 89.1 1.7 3.8E-05 54.7 10.4 25 43-67 488-512 (733)
440 TIGR01243 CDC48 AAA family ATP 89.1 1.4 3E-05 55.5 9.5 21 42-62 212-232 (733)
441 PRK06305 DNA polymerase III su 89.0 1.3 2.8E-05 52.2 8.7 29 34-62 28-59 (451)
442 PF00265 TK: Thymidine kinase; 89.0 0.44 9.6E-06 48.7 4.1 34 43-76 2-37 (176)
443 PLN00020 ribulose bisphosphate 89.0 0.68 1.5E-05 52.3 5.8 31 43-73 149-179 (413)
444 PRK10787 DNA-binding ATP-depen 89.0 0.9 1.9E-05 57.2 7.6 34 28-61 327-368 (784)
445 cd03246 ABCC_Protease_Secretio 88.9 0.97 2.1E-05 45.9 6.6 25 39-63 25-49 (173)
446 PRK12900 secA preprotein trans 88.9 0.34 7.3E-06 60.8 3.7 115 32-148 141-269 (1025)
447 TIGR02639 ClpA ATP-dependent C 88.8 2.8 6E-05 52.8 11.9 18 42-59 203-220 (731)
448 TIGR00763 lon ATP-dependent pr 88.8 0.77 1.7E-05 58.1 7.0 21 42-62 347-367 (775)
449 COG0556 UvrB Helicase subunit 88.8 0.95 2.1E-05 52.7 6.9 73 32-108 17-94 (663)
450 PRK10919 ATP-dependent DNA hel 88.8 0.97 2.1E-05 56.2 7.7 102 28-147 3-112 (672)
451 COG1435 Tdk Thymidine kinase [ 88.7 1.5 3.2E-05 45.1 7.5 115 42-182 4-121 (201)
452 PRK08699 DNA polymerase III su 88.6 2.1 4.6E-05 48.2 9.6 37 136-174 112-148 (325)
453 COG0396 sufC Cysteine desulfur 88.4 0.21 4.6E-06 52.3 1.3 31 136-167 161-191 (251)
454 TIGR00382 clpX endopeptidase C 88.4 1.3 2.8E-05 51.4 7.8 19 43-61 117-135 (413)
455 cd03230 ABC_DR_subfamily_A Thi 88.2 1.1 2.5E-05 45.4 6.6 24 39-62 23-46 (173)
456 PRK06964 DNA polymerase III su 88.2 1.8 4E-05 48.9 8.8 60 116-178 112-171 (342)
457 PF03354 Terminase_1: Phage Te 88.2 0.86 1.9E-05 54.3 6.5 144 30-179 1-164 (477)
458 TIGR02525 plasmid_TraJ plasmid 88.1 0.45 9.8E-06 54.4 3.9 24 40-63 147-170 (372)
459 TIGR03345 VI_ClpV1 type VI sec 88.1 2.5 5.3E-05 53.9 10.8 17 43-59 209-225 (852)
460 PF10650 zf-C3H1: Putative zin 88.1 0.28 6.1E-06 32.0 1.2 19 739-758 2-21 (23)
461 PRK11034 clpA ATP-dependent Cl 88.1 2.5 5.5E-05 53.0 10.6 18 42-59 207-224 (758)
462 PF02367 UPF0079: Uncharacteri 88.0 0.56 1.2E-05 44.8 3.8 37 33-69 6-42 (123)
463 TIGR02868 CydC thiol reductant 88.0 2.7 5.8E-05 50.8 10.7 25 39-63 358-382 (529)
464 PRK06871 DNA polymerase III su 87.8 2.5 5.5E-05 47.5 9.5 41 136-178 106-146 (325)
465 cd03243 ABC_MutS_homologs The 87.8 1.4 3.1E-05 45.8 7.2 23 41-63 28-50 (202)
466 COG1136 SalX ABC-type antimicr 87.6 0.31 6.8E-06 51.5 2.1 24 39-62 28-51 (226)
467 TIGR00602 rad24 checkpoint pro 87.6 2.4 5.3E-05 51.8 9.8 21 43-63 111-131 (637)
468 cd03215 ABC_Carb_Monos_II This 87.5 1.6 3.6E-05 44.6 7.3 25 39-63 23-47 (182)
469 KOG2004 Mitochondrial ATP-depe 87.5 1.7 3.6E-05 52.5 8.0 107 26-162 414-532 (906)
470 TIGR01420 pilT_fam pilus retra 87.5 0.47 1E-05 53.9 3.6 24 41-64 121-144 (343)
471 PTZ00454 26S protease regulato 87.5 3 6.6E-05 48.3 10.2 24 42-65 179-202 (398)
472 cd01123 Rad51_DMC1_radA Rad51_ 87.4 0.86 1.9E-05 48.6 5.4 25 41-65 18-42 (235)
473 COG0593 DnaA ATPase involved i 87.3 4.2 9.2E-05 46.9 11.0 18 42-59 113-130 (408)
474 cd01393 recA_like RecA is a b 87.3 0.88 1.9E-05 48.2 5.4 25 41-65 18-42 (226)
475 KOG0349 Putative DEAD-box RNA 87.2 0.18 3.8E-06 56.6 -0.1 30 28-57 25-54 (725)
476 PF13207 AAA_17: AAA domain; P 87.2 0.48 1E-05 44.6 2.9 18 44-61 1-18 (121)
477 PRK12901 secA preprotein trans 87.1 0.53 1.1E-05 59.2 3.9 117 30-148 170-301 (1112)
478 cd03282 ABC_MSH4_euk MutS4 hom 87.1 0.65 1.4E-05 48.6 4.1 22 41-62 28-49 (204)
479 KOG1039 Predicted E3 ubiquitin 87.1 0.22 4.7E-06 55.8 0.5 24 738-761 9-32 (344)
480 PF12775 AAA_7: P-loop contain 87.0 1.2 2.5E-05 49.0 6.2 34 34-67 24-58 (272)
481 PRK13695 putative NTPase; Prov 86.9 7.4 0.00016 39.4 11.7 20 44-63 2-21 (174)
482 COG0630 VirB11 Type IV secreto 86.9 0.91 2E-05 50.8 5.3 32 35-66 136-167 (312)
483 TIGR00767 rho transcription te 86.9 0.69 1.5E-05 53.0 4.4 24 39-62 165-188 (415)
484 COG3973 Superfamily I DNA and 86.7 0.97 2.1E-05 53.4 5.5 62 30-93 215-284 (747)
485 COG3267 ExeA Type II secretory 86.7 3.9 8.5E-05 43.8 9.5 55 36-91 44-102 (269)
486 COG5008 PilU Tfp pilus assembl 86.7 0.55 1.2E-05 50.0 3.2 27 39-65 124-150 (375)
487 PF13671 AAA_33: AAA domain; P 86.6 0.64 1.4E-05 45.1 3.6 24 44-67 1-24 (143)
488 KOG0737 AAA+-type ATPase [Post 86.6 0.78 1.7E-05 51.3 4.5 104 41-180 126-240 (386)
489 PRK10865 protein disaggregatio 86.5 2.4 5.1E-05 54.2 9.3 18 43-60 200-217 (857)
490 TIGR03346 chaperone_ClpB ATP-d 86.5 3 6.4E-05 53.4 10.3 129 27-189 174-319 (852)
491 PF12846 AAA_10: AAA-like doma 86.4 0.64 1.4E-05 51.1 3.9 36 42-77 1-38 (304)
492 PRK03992 proteasome-activating 86.4 3.4 7.3E-05 47.9 9.8 21 43-63 166-186 (389)
493 PRK09354 recA recombinase A; P 86.2 1.8 4E-05 48.9 7.2 26 41-66 59-84 (349)
494 cd03214 ABC_Iron-Siderophores_ 86.0 1.1 2.3E-05 45.9 4.9 25 39-63 22-46 (180)
495 PF06745 KaiC: KaiC; InterPro 85.9 0.87 1.9E-05 48.3 4.4 34 41-74 18-55 (226)
496 TIGR03263 guanyl_kin guanylate 85.9 0.65 1.4E-05 47.3 3.3 22 42-63 1-22 (180)
497 PRK05564 DNA polymerase III su 85.9 4.8 0.0001 45.1 10.6 39 136-176 92-130 (313)
498 CHL00095 clpC Clp protease ATP 85.7 2.7 5.8E-05 53.6 9.3 16 44-59 541-556 (821)
499 TIGR01074 rep ATP-dependent DN 85.7 1.6 3.5E-05 54.4 7.2 103 28-148 2-112 (664)
500 PRK08058 DNA polymerase III su 85.6 4 8.6E-05 46.2 9.7 39 136-176 109-147 (329)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-118 Score=987.80 Aligned_cols=589 Identities=27% Similarity=0.389 Sum_probs=522.7
Q ss_pred CccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC----cEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME----PILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 19 ~~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~----~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
++..|+.|||++++++++.++.+++++||.|+||||||||+||||.|.|+. +|.||||||+||+++|.||++|+|+
T Consensus 257 iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 257 IEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 334589999999999999999999999999999999999999999999873 4999999999999999999999999
Q ss_pred ccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.+|..|||+|||+++++.+|.|.|||+|||+++++.++ .+..|++|||||||||++.+|+|.+++|.+...||++|+++
T Consensus 337 kLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred ccccccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEe
Confidence 99999999999999999999999999999999999876 46799999999999999999999999999999999999999
Q ss_pred ecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
+|||+|+++|+.||++ ++++.+|+ +.|||.++|... +.
T Consensus 416 sSAT~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~~-----------------------PE--------- 453 (902)
T KOG0923|consen 416 SSATMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTKA-----------------------PE--------- 453 (902)
T ss_pred eccccCHHHHHHhccC------CcEEeccC----cccceeeecccC-----------------------Cc---------
Confidence 9999999999999987 78999997 679999988542 11
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhc-------CCCCCcEEEEecCCCCHHHHHHHHhccc-C
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKICK-S 326 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~-------~~~~~~~v~~lhs~l~~~er~~i~~~f~-~ 326 (957)
.+..+.....+..||.+.+ .|+||||+++.++|+.+.+.|. .....+-+.|+|++||.+.|..|++.-+ +
T Consensus 454 AdYldAai~tVlqIH~tqp--~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g 531 (902)
T KOG0923|consen 454 ADYLDAAIVTVLQIHLTQP--LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG 531 (902)
T ss_pred hhHHHHHHhhheeeEeccC--CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC
Confidence 2234445577888998887 4899999999999987666554 3345678999999999999999998754 4
Q ss_pred CceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh-h
Q 002165 327 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-T 405 (957)
Q Consensus 327 ~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~-~ 405 (957)
.||||+||||||+||||+||.||||+|++|++.|++.+|+++|.+.|||||++.||+|||||++||+|||||+...|. .
T Consensus 532 aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 532 ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHE 611 (902)
T ss_pred ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhh
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999997775 6
Q ss_pred ccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHH
Q 002165 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 485 (957)
Q Consensus 406 l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a 485 (957)
++..+.|||+|.||.++||.|++ +|..+.+.|+|+|||+.+++..||+.|..||||+.. | +||.+||.|+
T Consensus 612 LE~~t~PEIqRtnL~nvVL~LkS-----LGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~---G--eLTk~GrrMa 681 (902)
T KOG0923|consen 612 LEEMTVPEIQRTNLGNVVLLLKS-----LGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHL---G--ELTKLGRRMA 681 (902)
T ss_pred hccCCCcceeeccchhHHHHHHh-----cCcchhcccccCCCCChHHHHHHHHHHHHhhccccc---c--chhhhhhhhh
Confidence 88889999999999999999964 445556778999999999999999999999999984 7 6999999999
Q ss_pred hCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHHHHH
Q 002165 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 565 (957)
Q Consensus 486 ~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af 565 (957)
+||+||++||||+.+..++|..|+++||||||+.+.+|.+|.+++-.+|.++..|..+.|| |+..|++|
T Consensus 682 EfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gD-----------hi~~L~vy 750 (902)
T KOG0923|consen 682 EFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGD-----------HIVLLNVY 750 (902)
T ss_pred hcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcc-----------hhhhhHHH
Confidence 9999999999999999999999999999999999999999999888889999999988887 88888999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCCCC-
Q 002165 566 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP- 644 (957)
Q Consensus 566 ~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~~~- 644 (957)
+.|.. .+.+.+||.+||+++++|.++++||+||..++.+..+..++..+...
T Consensus 751 n~w~e---------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~ 803 (902)
T KOG0923|consen 751 NQWKE---------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDK 803 (902)
T ss_pred HHHhh---------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHH
Confidence 99986 45578999999999999999999999999999998877665332210
Q ss_pred --------CCCC-----------Ccc-------ccccccccCCCCCCCCCCccCCCCCCCCcccccccc----------C
Q 002165 645 --------TYYD-----------PYE-------FEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----------V 688 (957)
Q Consensus 645 --------~~~~-----------~~~-------~~h~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~----------~ 688 (957)
.||+ ... .-..++...+|.||+|||+|+|+ ++|||.|+. |
T Consensus 804 irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~ts----ke~mr~~~e~e~~Wlie~ap 879 (902)
T KOG0923|consen 804 IRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTS----KEFMRQVIEIEEEWLIEVAP 879 (902)
T ss_pred HHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcCh----HHHHHHHHhhhhhHHHHhch
Confidence 1111 111 11233555889999999999999 999999987 9
Q ss_pred CCCCCCcccCchHHHH
Q 002165 689 PFVAPNQFQSNNVAEK 704 (957)
Q Consensus 689 ~~~~~~~f~~~e~k~~ 704 (957)
+||+.+++.+..+++.
T Consensus 880 hyyk~kdled~~~kk~ 895 (902)
T KOG0923|consen 880 HYYKLKDLEDATNKKM 895 (902)
T ss_pred hhhhhhhccccccccc
Confidence 9999999987766543
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-117 Score=995.88 Aligned_cols=572 Identities=31% Similarity=0.471 Sum_probs=509.5
Q ss_pred CCCccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhhcC
Q 002165 17 PFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 17 ~~~~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~---~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
..+..+|+.|||+.++.+|+.++.+|+++||.|+||||||||+|||++|.|+. +|.||||||+||+++|+|||+|++
T Consensus 41 ~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~ 120 (674)
T KOG0922|consen 41 LSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMG 120 (674)
T ss_pred cCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhC
Confidence 33557789999999999999999999999999999999999999999999885 599999999999999999999999
Q ss_pred CccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 002165 94 CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklI 173 (957)
+.+|+.|||.|||++.++++|+|+|+|+|+|||++..+++ +.+|++|||||||||++.+|+++++||.++.+++++|+|
T Consensus 121 ~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 121 CQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred CCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEE
Confidence 9999999999999999999999999999999999998764 679999999999999999999999999999999999999
Q ss_pred EecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
+||||+|+++|++||+. ++++.+|+ +.|||+++|+.. +..+
T Consensus 200 imSATlda~kfS~yF~~------a~i~~i~G----R~fPVei~y~~~-----------------------p~~d------ 240 (674)
T KOG0922|consen 200 IMSATLDAEKFSEYFNN------APILTIPG----RTFPVEILYLKE-----------------------PTAD------ 240 (674)
T ss_pred EEeeeecHHHHHHHhcC------CceEeecC----CCCceeEEeccC-----------------------Cchh------
Confidence 99999999999999986 67888887 799999998652 1122
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC------CCcEEEEecCCCCHHHHHHHHhccc-C
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICK-S 326 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lhs~l~~~er~~i~~~f~-~ 326 (957)
..+.....+.+||.+++ .|+||||++|.+||+.+++.|.+.. ....+.++||.|+.++|.+++...+ +
T Consensus 241 ---Yv~a~~~tv~~Ih~~E~--~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g 315 (674)
T KOG0922|consen 241 ---YVDAALITVIQIHLTEP--PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG 315 (674)
T ss_pred ---hHHHHHHHHHHHHccCC--CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC
Confidence 23334477889998876 5799999999999999999887431 1125789999999999999998766 5
Q ss_pred CceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhc
Q 002165 327 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTL 406 (957)
Q Consensus 327 ~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l 406 (957)
.||||+||||||+|||||+|+||||+|++|++.||+..+++.+.++||||++|.||+|||||++||+|||||++++|+.|
T Consensus 316 ~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 316 KRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKM 395 (674)
T ss_pred cceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCH-HHHHHH
Q 002165 407 EDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF-YGRLLA 485 (957)
Q Consensus 407 ~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~-lG~~~a 485 (957)
++.+.|||+|++|+.++|+|+.++ ++ +.+.|+|+|||+++++..|++.|..+||||++ | .+|. +|+.|+
T Consensus 396 ~~~~~PEI~R~~Ls~~vL~Lkalg---i~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma 465 (674)
T KOG0922|consen 396 PLQTVPEIQRVNLSSAVLQLKALG---IN--DPLRFPFIDPPPPEALEEALEELYSLGALDDR---G--KLTSPLGRQMA 465 (674)
T ss_pred ccCCCCceeeechHHHHHHHHhcC---CC--CcccCCCCCCCChHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhh
Confidence 999999999999999999997533 33 45667999999999999999999999999984 6 4777 999999
Q ss_pred hCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHH-HHHHhcccccCCCCcccccccchhhHHHHHHH
Q 002165 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCA 564 (957)
Q Consensus 486 ~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~a 564 (957)
+||++|.++|+|+.+.++||..|+++||||||+++ .|.+|.+.++. ++..+.+|++++|| |++.||+
T Consensus 466 ~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a~~~~~kf~~~eGD-----------h~tlL~v 533 (674)
T KOG0922|consen 466 ELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDADRKRAKFANPEGD-----------HLTLLNV 533 (674)
T ss_pred hcCCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhhhHHHHhhcCcccC-----------HHHHHHH
Confidence 99999999999999999999999999999999876 89999988776 88889999999998 7788899
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCCCC
Q 002165 565 FQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP 644 (957)
Q Consensus 565 f~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~~~ 644 (957)
|+.|.. ++..++||++||||.++|+.+.+||.||.+++.++++...+ ..+++
T Consensus 534 y~~~~~---------------------------~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s-~~~d~ 585 (674)
T KOG0922|consen 534 YESWKE---------------------------NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSS-CGGDM 585 (674)
T ss_pred HHHHHh---------------------------cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccC-CCCCH
Confidence 999986 34467899999999999999999999999999999987744 33322
Q ss_pred ---------------------CCCCCcccc-----c--cccccCCCCCCCCCCccCCCCCCCCcccccccc
Q 002165 645 ---------------------TYYDPYEFE-----H--TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (957)
Q Consensus 645 ---------------------~~~~~~~~~-----h--~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~ 687 (957)
..|...... | .||....|+||+|||++.|+ +.|+|.|+.
T Consensus 586 ~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Tt----k~Y~r~Vt~ 652 (674)
T KOG0922|consen 586 EKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTT----KEYMRNVTA 652 (674)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEEEEEeecc----hHhHhheee
Confidence 113222221 2 22555779999999999999 999999998
No 3
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-117 Score=951.90 Aligned_cols=586 Identities=27% Similarity=0.416 Sum_probs=522.1
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 21 ~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~---~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..|..||+|.++++.++.+.+|+.+|++|+||||||||+||++++... +.|+||||||++|+++|+||++|++..+|
T Consensus 41 k~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG 120 (699)
T KOG0925|consen 41 KKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLG 120 (699)
T ss_pred HHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccc
Confidence 457899999999999999999999999999999999999999987643 57999999999999999999999999999
Q ss_pred CeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
.+|||.|+|+++.+++|-+.|||+|||+++..++++ +.+|++||+||||||++.+|.+++++|.+...+||+|+|+|||
T Consensus 121 ~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSa 199 (699)
T KOG0925|consen 121 EEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSA 199 (699)
T ss_pred hhccccccccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeec
Confidence 999999999999999999999999999999988764 5699999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
|+++++|+.||++ ++++.+|+ .+|++++|.++ ...+.
T Consensus 200 tl~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e--------------------------------~erDy 236 (699)
T KOG0925|consen 200 TLDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPE--------------------------------PERDY 236 (699)
T ss_pred ccchHHHHHHhCC------CCeeecCC-----CCceEEEecCC--------------------------------CChhH
Confidence 9999999999987 67888886 57899888653 22345
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC-------CCCCcEEEEecCCCCHHHHHHHHhccc-----
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------LSSFFKVHILHSSVDTEQALMAMKICK----- 325 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------~~~~~~v~~lhs~l~~~er~~i~~~f~----- 325 (957)
.+.+..++.+||..+. +|+||||+++.++|+..++.+.. ......++++| +.++..+++...
T Consensus 237 lEaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 5666788999998876 68999999999999999887752 23457899999 445555665432
Q ss_pred -CCceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 326 -SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 326 -~~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
.+|||||+||+||++++|++|.||||+|+.|+++|||+-..+++.+.||||++|.||+|||||++||+|||||+++.|+
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred -hccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHH
Q 002165 405 -TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRL 483 (957)
Q Consensus 405 -~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~ 483 (957)
+|.+.+.|||+|++|.+++|+||.+ +..+..-|+|+|||.++++++|++.|..|+|||++ | .||++|..
T Consensus 391 ~em~~~typeilrsNL~s~VL~LKkl-----gI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDd---G--nLT~lG~i 460 (699)
T KOG0925|consen 391 KEMQPQTYPEILRSNLSSTVLQLKKL-----GIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDD---G--NLTSLGEI 460 (699)
T ss_pred hcCCCCCcHHHHHHhhHHHHHHHHhc-----CcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCC---c--ccchhhhh
Confidence 7999999999999999999999753 33333445999999999999999999999999985 7 59999999
Q ss_pred HHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCC-cchHHHHHHhcccccCCCCcccccccchhhHHHHH
Q 002165 484 LASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (957)
Q Consensus 484 ~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l 562 (957)
|++|||||++|||||.+++|.|.+|+++|+|||++. +.|++|. +.+++|++++..|.|.||| |+++|+.+
T Consensus 461 mSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvP-ncFvRp~~~a~kaAdeak~~faH~dGD--------HlTLlnVY 531 (699)
T KOG0925|consen 461 MSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVP-NCFVRPTSSASKAADEAKETFAHIDGD--------HLTLLNVY 531 (699)
T ss_pred hhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCC-ccccCCChhHHHHHHHHHHHhccCCcc--------hHHHHHHH
Confidence 999999999999999999999999999999999975 4899988 6778899999999999998 66666555
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCC
Q 002165 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG 642 (957)
Q Consensus 563 ~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~ 642 (957)
.||+ . ++...+||++||||+++|+.+.++|.||+++|.|+++++.+...+
T Consensus 532 hAfk---q---------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~ 581 (699)
T KOG0925|consen 532 HAFK---Q---------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFG 581 (699)
T ss_pred HHHH---h---------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 5553 2 234578999999999999999999999999999999999988877
Q ss_pred CCCCCCCcccc------------------------------ccccccCCCCCCCCCCccCCCCCCCCcccccccc-----
Q 002165 643 LPTYYDPYEFE------------------------------HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----- 687 (957)
Q Consensus 643 ~~~~~~~~~~~------------------------------h~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~----- 687 (957)
.+.||.+++.. ..|.|.+.|+||+|||||+|+ +||+|+|+.
T Consensus 582 S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~----~N~ir~vt~I~pew 657 (699)
T KOG0925|consen 582 SRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTT----KNFIRTVTDIRPEW 657 (699)
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeec----cceeeeecccCHHH
Confidence 78777665522 223555899999999999999 999999998
Q ss_pred -----CCCCCCCcccCchHHHHHHHHH
Q 002165 688 -----VPFVAPNQFQSNNVAEKLASII 709 (957)
Q Consensus 688 -----~~~~~~~~f~~~e~k~~L~~ii 709 (957)
|+||+++||+++++|+.|++..
T Consensus 658 lv~laP~YydlsNfp~~e~k~~L~~~~ 684 (699)
T KOG0925|consen 658 LVELAPQYYDLSNFPPSEAKRALEQLY 684 (699)
T ss_pred HHHhchhhcccccCCchHHHHHHHHHH
Confidence 9999999999999999999843
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-113 Score=949.50 Aligned_cols=580 Identities=27% Similarity=0.405 Sum_probs=509.2
Q ss_pred CccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 19 ~~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~---~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
..-+|+.||++..+++++..|.+|++|||+|+||||||||+||||+++|+. .|.||||||+||+++|+||++|+|..
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 556788899999999999999999999999999999999999999999874 79999999999999999999999999
Q ss_pred cCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 96 lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
+|..|||.|||++.+++.|.|.|||+|+||++...+. .+.+|++||+||||||++++|++++++|.++.++.|+|+|++
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 9999999999999999999999999999999976553 356999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCCh
Q 002165 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (957)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (957)
|||+|+++|.+||++ ++.+++|+ +.|||++.|..... +
T Consensus 507 SATm~a~kf~nfFgn------~p~f~IpG----RTyPV~~~~~k~p~--------------------------------e 544 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGN------CPQFTIPG----RTYPVEIMYTKTPV--------------------------------E 544 (1042)
T ss_pred eccccHHHHHHHhCC------CceeeecC----CccceEEEeccCch--------------------------------H
Confidence 999999999999986 67888887 78999998754321 1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC--------CCCCcEEEEecCCCCHHHHHHHHhcccC-
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------LSSFFKVHILHSSVDTEQALMAMKICKS- 326 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------~~~~~~v~~lhs~l~~~er~~i~~~f~~- 326 (957)
+..+...+-...||...+ .|+||||.+|.++++-.+..+.. ...++.|+++++.||.+-|.++++...+
T Consensus 545 DYVeaavkq~v~Ihl~~~--~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~ 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGP--PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG 622 (1042)
T ss_pred HHHHHHHhhheEeeccCC--CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC
Confidence 222333344556776664 58999999999999877665542 1236899999999999999999986554
Q ss_pred CceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhh-hh
Q 002165 327 HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF-GT 405 (957)
Q Consensus 327 ~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~-~~ 405 (957)
.||+||||||||+|+|||+|.||||+|++|.++|++..+++.+.+.|||+|++.||+|||||++||.|||||++..| ++
T Consensus 623 vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~e 702 (1042)
T KOG0924|consen 623 VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNE 702 (1042)
T ss_pred ceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999766 57
Q ss_pred ccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHH
Q 002165 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 485 (957)
Q Consensus 406 l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a 485 (957)
|.+.++|||+|++|.+++|.|++ ++..+...|+|+|||+.+.+..|+..|..||||+.. | .||++|+.|+
T Consensus 703 ml~stvPEIqRTNl~nvVLlLks-----lgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~---g--~LT~lG~~Mv 772 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSNVVLLLKS-----LGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNT---G--QLTPLGRKMV 772 (1042)
T ss_pred cccCCCchhhhcchhhHHHHHHh-----cChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccC---C--ccchhhHHhh
Confidence 99999999999999999999964 444455567999999999999999999999999984 6 5999999999
Q ss_pred hCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHHHHH
Q 002165 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 565 (957)
Q Consensus 486 ~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af 565 (957)
+|||||.++||||.++.+||.+|+|+|++|||+.. .|++|.+++++++.++.+|+++++| ||++||+|
T Consensus 773 efpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~-VF~rpker~eead~ar~Kf~~~~sD-----------hLTlLNVf 840 (1042)
T KOG0924|consen 773 EFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPA-VFYRPKEREEEADAAREKFQVPESD-----------HLTLLNVF 840 (1042)
T ss_pred hCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccc-eeeccccchhhhhhHHhhhcCCCCc-----------hhhHHHHH
Confidence 99999999999999999999999999999999765 8999999999999999999999987 77788999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCCC--
Q 002165 566 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL-- 643 (957)
Q Consensus 566 ~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~~-- 643 (957)
++|.+ ++....||.+|||+.++|+.++++|.||+.+|+.+++++.|+.+-+
T Consensus 841 ~qw~~---------------------------~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdiv 893 (1042)
T KOG0924|consen 841 NQWRK---------------------------NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDIV 893 (1042)
T ss_pred HHHHh---------------------------cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHHH
Confidence 99986 3455789999999999999999999999999999999988752221
Q ss_pred -----------------CCCCCCccccccc------cccC--CCCCCCCCCccCCCCCCCCcccccccc----------C
Q 002165 644 -----------------PTYYDPYEFEHTC------LLNC--DPPRDMDPLAADNEHLGPSFEAKKCVA----------V 688 (957)
Q Consensus 644 -----------------~~~~~~~~~~h~~------~~~~--~~~~v~~~e~~~t~~~~~~~~~r~~~~----------~ 688 (957)
..+|-..+..-.| .|++ .|++|+|||+++|+ ++||+.||+ |
T Consensus 894 rKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~----keym~cvT~v~~~wl~E~gp 969 (1042)
T KOG0924|consen 894 RKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTT----KEYMQCVTSVSPEWLAELGP 969 (1042)
T ss_pred HHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhH----HHHHHHHhhCCHHHHHHhCc
Confidence 0223222222233 4445 59999999999999 999999998 6
Q ss_pred CCCCCCcc
Q 002165 689 PFVAPNQF 696 (957)
Q Consensus 689 ~~~~~~~f 696 (957)
-||+..+-
T Consensus 970 ~~y~ik~~ 977 (1042)
T KOG0924|consen 970 MFYSIKEA 977 (1042)
T ss_pred eeEecccc
Confidence 67766533
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3e-99 Score=931.57 Aligned_cols=583 Identities=24% Similarity=0.367 Sum_probs=492.7
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~---~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
.+.+|||+.++++|++++.+|+++||+|+||||||||+|+++++.+.+ .|+||||||++|+++|+|++++++..+|.
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 356799999999999999999999999999999999999999987653 79999999999999999999999999999
Q ss_pred eeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 99 ~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.|||.++++++.+.+++|+|||||+|++++..+.+ +.+|++|||||||||++++||++++++.++..++++|+|+||||
T Consensus 149 ~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 149 CVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred eeceeecCccccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCC
Confidence 99999999999999999999999999999987654 67999999999999999999999999999988899999999999
Q ss_pred CChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHH
Q 002165 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (957)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (957)
++.+.|.++|.. .+++.+++ +.++++++|.+... .+.....+..
T Consensus 228 id~e~fs~~F~~------apvI~V~G----r~~pVei~y~p~~~--------------------------~~~~~~~d~l 271 (1294)
T PRK11131 228 IDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPIVE--------------------------EADDTERDQL 271 (1294)
T ss_pred CCHHHHHHHcCC------CCEEEEcC----ccccceEEEeeccc--------------------------ccchhhHHHH
Confidence 999999999964 23556664 45788877753110 0000011222
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHhcccCCceEEEEcccc
Q 002165 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (957)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTnia 337 (957)
..+.+.+..+... ..|+||||+||+++|+.+++.|.... ....+.++||+|++++|..+++.. ++++||||||||
T Consensus 272 ~~ll~~V~~l~~~---~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIA 347 (1294)
T PRK11131 272 QAIFDAVDELGRE---GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHH
Confidence 2233334444322 25799999999999999999998543 235689999999999999998863 456999999999
Q ss_pred ccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhccCCCCCchhcC
Q 002165 338 ESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRL 417 (957)
Q Consensus 338 e~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l~~~~~PEI~r~ 417 (957)
|+|||||+|+||||+|++|+++||+.++++.+...|||+++|.||+|||||.++|+||+||++++|..+++++.|||+|+
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~ 427 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRT 427 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHH
Q 002165 418 SLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLV 497 (957)
Q Consensus 418 ~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~l 497 (957)
+|++++|+++.++ +++...| +|++||+.++|.+|++.|.++||||.+..++..+||++|+.|++|||||++||||
T Consensus 428 ~L~~viL~lk~lg---l~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmL 502 (1294)
T PRK11131 428 NLASVILQMTALG---LGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMV 502 (1294)
T ss_pred CHHHHHHHHHHcC---CCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHH
Confidence 9999999997544 4555444 8999999999999999999999998632112246999999999999999999999
Q ss_pred HHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhh
Q 002165 498 LKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQR 577 (957)
Q Consensus 498 l~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~ 577 (957)
+.+..+||++|+++|||+||+++ ||.+|.+++++++..+.+|.+++|| |++.+|+|+.|+...+..
T Consensus 503 l~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~f~~~~sD-----------~lt~ln~~~~~~~~~~~~-- 568 (1294)
T PRK11131 503 LEAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRRFADKESD-----------FLAFVNLWNYLQEQQKAL-- 568 (1294)
T ss_pred HHhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHHHhhh--
Confidence 99999999999999999999986 8999999988889999999988887 888889999998632210
Q ss_pred hhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCC---------------
Q 002165 578 LDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG--------------- 642 (957)
Q Consensus 578 ~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~--------------- 642 (957)
..++.++||++||||+++|++|.+|+.||.++++++++...+..+.
T Consensus 569 -------------------s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~~n 629 (1294)
T PRK11131 569 -------------------SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLLSH 629 (1294)
T ss_pred -------------------cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcHHH
Confidence 1344578999999999999999999999999999998755331111
Q ss_pred ------CCCCCCCccc----c--ccccccCCCCCCCCCCccCCCCCCCCcccccccc
Q 002165 643 ------LPTYYDPYEF----E--HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (957)
Q Consensus 643 ------~~~~~~~~~~----~--h~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~ 687 (957)
...+|...+. . -.++....|.||+|+|+|.|+ +.|+|.|++
T Consensus 630 va~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~~Elv~Ts----r~y~r~va~ 682 (1294)
T PRK11131 630 IGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETS----RLWGRIAAR 682 (1294)
T ss_pred HeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEEEeeeccC----hhhhhhhcc
Confidence 0012222110 0 122445679999999999999 999999998
No 6
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.7e-99 Score=899.41 Aligned_cols=555 Identities=35% Similarity=0.494 Sum_probs=493.6
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 20 ~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
...|.+||++.++++|+.++.++++++|+|+||||||||+||++++.. ..+|+||||||++|+++|+||+.|++.
T Consensus 166 ~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 166 LRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 355889999999999999999999999999999999999999999864 458999999999999999999999999
Q ss_pred ccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.+|..|||+||.++..+..|.+.|||+|+||+.++.++ .+.+++|||+||+|||++++||++.++|.++.++|++|+|+
T Consensus 246 ~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred ccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 99999999999999998889999999999999999864 36699999999999999999999999999999999999999
Q ss_pred ecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC-----cc
Q 002165 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS-----MA 249 (957)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 249 (957)
||||+|++.|++||+. .+++.+|+ +.|||..+|++++...+.......... .++... ..
T Consensus 325 MSAT~dae~fs~YF~~------~pvi~i~g----rtfpV~~~fLEDil~~~~~~~~~~~~~------~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGG------CPVITIPG----RTFPVKEYFLEDILSKTGYVSEDDSAR------SGPERSQLRLARL 388 (924)
T ss_pred eeeecchHHHHHHhCC------CceEeecC----CCcchHHHHHHHHHHHhcccccccccc------cccccCccccccc
Confidence 9999999999999985 67888887 789999999999888775332211111 000000 00
Q ss_pred cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-----CCCcEEEEecCCCCHHHHHHHHhcc
Q 002165 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----SSFFKVHILHSSVDTEQALMAMKIC 324 (957)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-----~~~~~v~~lhs~l~~~er~~i~~~f 324 (957)
........++++..++.+|+..+. .|.||||+||+++|..+...|... ...+.++++||.|+.++|+.+++..
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~--~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREF--EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCC--CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 001112457889999999998743 689999999999999999998631 2348899999999999999999987
Q ss_pred cCC-ceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhh
Q 002165 325 KSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (957)
Q Consensus 325 ~~~-rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~ 403 (957)
..| ||||+||||||+|||||||.||||+|+.|++.||+..++.++...|+|+|++.||+|||||+++|+||+||++..|
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 766 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC-CCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHH
Q 002165 404 GTLED-HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 482 (957)
Q Consensus 404 ~~l~~-~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~ 482 (957)
+.+.. +++|||+|.+|.+++|++|.++ +++...|+..+++||+.+++..|+..|..+|||+.+ .+||+||+
T Consensus 547 ~~~~~~~q~PEilR~pL~~l~L~iK~l~---~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~-----e~LT~LG~ 618 (924)
T KOG0920|consen 547 EKLMLAYQLPEILRTPLEELCLHIKVLE---QGSIKAFLSKALDPPPADAVDLAIERLKQIGALDES-----EELTPLGL 618 (924)
T ss_pred hhcccccCChHHHhChHHHhhheeeecc---CCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCc-----ccchHHHH
Confidence 98766 9999999999999999998544 667779999999999999999999999999999984 27999999
Q ss_pred HHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHH
Q 002165 483 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (957)
Q Consensus 483 ~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l 562 (957)
.|+.||+||++|||++.+..|+|++++++|||+|+. +.||..|.++++.+++++..|...+ ++|||+++
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~----------~SD~la~~ 687 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDS----------ISDHLAVV 687 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCC----------cchHHHHH
Confidence 999999999999999999999999999999999994 5699999999998898888877544 46799999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCC
Q 002165 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRP 634 (957)
Q Consensus 563 ~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~ 634 (957)
+||+.|+++.+.+ ...+.+||++|||+..+|++++.++.|+.+.+.++++
T Consensus 688 ~ay~~w~~~~~~~----------------------~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~ 737 (924)
T KOG0920|consen 688 RAYAGWREILRSG----------------------PSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGL 737 (924)
T ss_pred HHHHHHHHHHhcc----------------------chHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999976542 2457899999999999999999999999999999876
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.5e-95 Score=897.54 Aligned_cols=580 Identities=24% Similarity=0.369 Sum_probs=491.0
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~---~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
.+.+|||+.++.+|+++|.+|+++||+|+||||||||+|+++++.+. +.|+||||||++|.++|.|+++++|+.+|.
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~ 141 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGE 141 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcce
Confidence 35679999999999999999999999999999999999999999764 379999999999999999999999999999
Q ss_pred eeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 99 ~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.|||.+++++..+.+|+|+|||+|+|++++..+++ +.+|++|||||||||++++|+++++++.++..++++|+|+||||
T Consensus 142 ~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 142 KVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred EEeeEEcCCcccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999999999999999999999999999987753 66999999999999999999999999999989999999999999
Q ss_pred CChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHH
Q 002165 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (957)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (957)
++.+.|.+||+. .+++.+++ +.||+++.|.+... ..........
T Consensus 221 ld~~~fa~~F~~------apvI~V~G----r~~PVev~Y~~~~~--------------------------~~~~~~~~~~ 264 (1283)
T TIGR01967 221 IDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPLVE--------------------------EQEDDDLDQL 264 (1283)
T ss_pred cCHHHHHHHhcC------CCEEEECC----CcccceeEEecccc--------------------------cccchhhhHH
Confidence 999999999964 34566665 56888887743100 0000011222
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHhcccCCceEEEEcccc
Q 002165 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (957)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTnia 337 (957)
+.+.+.+..+... ..|+||||+||+++|+.+++.|.... .++.+.++||+|+.++|..+++.+ ++++||||||||
T Consensus 265 ~~i~~~I~~l~~~---~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVLATNIA 340 (1283)
T TIGR01967 265 EAILDAVDELFAE---GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHhh---CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEEeccHH
Confidence 3344445554433 25799999999999999999998543 357899999999999999998765 357999999999
Q ss_pred ccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhccCCCCCchhcC
Q 002165 338 ESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRL 417 (957)
Q Consensus 338 e~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l~~~~~PEI~r~ 417 (957)
|+|||||+|+||||+|++|.++||+.++++.+.+.|||+++|.||+|||||.++|+||+||++++|+.+++++.|||+|+
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~ 420 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRT 420 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCC-CCccCHHHHHHHhCCCChHHHHH
Q 002165 418 SLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG-RYEPTFYGRLLASFSLSFDASVL 496 (957)
Q Consensus 418 ~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g-~~~lT~lG~~~a~lpl~p~~~~~ 496 (957)
+|++++|+++.++ ++++..| +|++||+.++|.+|++.|.++||||.+ | ...||++|+.|+.||+||++|+|
T Consensus 421 ~L~~viL~l~~lg---~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~---~~~~~LT~lGr~ma~LPldPrlarm 492 (1283)
T TIGR01967 421 NLASVILQMLALR---LGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDD---EAEPQLTPIGRQLAQLPVDPRLARM 492 (1283)
T ss_pred cHHHHHHHHHhcC---CCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCC---CCCccccHHHHHHhhcCCChHHHHH
Confidence 9999999998654 4454444 899999999999999999999999974 3 24699999999999999999999
Q ss_pred HHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHhhhh
Q 002165 497 VLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQ 576 (957)
Q Consensus 497 ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~w~~~~~~~~ 576 (957)
|+.+..+||++|+++|||+|++++ +|.+|.+++++++..+..|.+++|| |++.+|+|+.|.+.....
T Consensus 493 Ll~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f~~~~sD-----------~l~~L~~~~~~~~~~~~~- 559 (1283)
T TIGR01967 493 LLEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARFKDPRSD-----------FLSRVNLWRHIEEQRQAL- 559 (1283)
T ss_pred HHHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHhhhhc-
Confidence 999999999999999999999876 7889999888889999999887776 888889999987632110
Q ss_pred hhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCCC-C-------C---
Q 002165 577 RLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL-P-------T--- 645 (957)
Q Consensus 577 ~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~~-~-------~--- 645 (957)
..+..+.||++||||+.+|++|.+++.||.+++.++++...+..... . +
T Consensus 560 --------------------~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~ 619 (1283)
T TIGR01967 560 --------------------SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLS 619 (1283)
T ss_pred --------------------cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHH
Confidence 02345789999999999999999999999999998876433211110 0 1
Q ss_pred ---------CCCCccc-----c-ccccccCCCCCCCCCCccCCCCCCCCcccccccc
Q 002165 646 ---------YYDPYEF-----E-HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (957)
Q Consensus 646 ---------~~~~~~~-----~-h~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~ 687 (957)
.|..... + ..++....|+||+|+|++.|+ +.|+|.|++
T Consensus 620 ~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~----~~~ir~~a~ 672 (1283)
T TIGR01967 620 QIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAAELVETS----KLYARLVAK 672 (1283)
T ss_pred HHheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEeeecccc----hheEeeecc
Confidence 1211110 0 122444568999999999998 789999998
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-95 Score=867.94 Aligned_cols=537 Identities=30% Similarity=0.408 Sum_probs=461.2
Q ss_pred CCCCccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhhc
Q 002165 16 SPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 16 ~~~~~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~---~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
.+.....+..||++..+.+|++++.+++++||+||||||||||+|+++++.++ ++|+||||||+||.++|+|+++++
T Consensus 39 ~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 39 VPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred cchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHh
Confidence 44456678999999999999999999999999999999999999999999985 489999999999999999999999
Q ss_pred CCccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC-Cce
Q 002165 93 NCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLR 171 (957)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~-~lk 171 (957)
|+.+|+.|||.|||++.++++|+|.|||+|+|+++++++++ +..|++|||||||||++++|+++++++.++..++ |+|
T Consensus 119 ~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 119 GEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred CCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 99999999999999999999999999999999999998764 6799999999999999999999999999877765 799
Q ss_pred EEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
+|+||||+|.++|+.||++ ++++.+++ +.|||+++|.+... .+
T Consensus 198 iIimSATld~~rfs~~f~~------apvi~i~G----R~fPVei~Y~~~~~-----------------------~d---- 240 (845)
T COG1643 198 LIIMSATLDAERFSAYFGN------APVIEIEG----RTYPVEIRYLPEAE-----------------------AD---- 240 (845)
T ss_pred EEEEecccCHHHHHHHcCC------CCEEEecC----CccceEEEecCCCC-----------------------cc----
Confidence 9999999999999999986 67888876 78999999965321 00
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC--CCCCcEEEEecCCCCHHHHHHHHhcccCC-c
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--LSSFFKVHILHSSVDTEQALMAMKICKSH-R 328 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--~~~~~~v~~lhs~l~~~er~~i~~~f~~~-r 328 (957)
..+.+.+...+ .++.. ++.|+||||+||.++|+.+++.|.. ....+.|.|+||.|+.++|.++++....+ |
T Consensus 241 ---~~l~~ai~~~v-~~~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~R 314 (845)
T COG1643 241 ---YILLDAIVAAV-DIHLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKR 314 (845)
T ss_pred ---hhHHHHHHHHH-HHhcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcc
Confidence 00222222222 23333 3368999999999999999999986 33578999999999999999999988777 5
Q ss_pred eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhccC
Q 002165 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLED 408 (957)
Q Consensus 329 kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l~~ 408 (957)
|||+||||||||||||+|+||||+|++|+++||+.+++..+.++|||||+|.||+|||||++||+|||||++++|..|++
T Consensus 315 KVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~ 394 (845)
T COG1643 315 KVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPE 394 (845)
T ss_pred eEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCC
Q 002165 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS 488 (957)
Q Consensus 409 ~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lp 488 (957)
++.|||+|++|++++|+|+.+| ++ .+...|+|+|||+..++.+|++.|.++||||.. | .||++|+.|+.||
T Consensus 395 ~t~PEIlrtdLs~~vL~l~~~G---~~-~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lp 465 (845)
T COG1643 395 FTLPEILRTDLSGLVLQLKSLG---IG-QDIAPFPFLDPPPEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSLLP 465 (845)
T ss_pred CCChhhhhcchHHHHHHHHhcC---CC-CCcccCccCCCCChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCC
Confidence 9999999999999999997654 32 123445999999999999999999999999984 6 4999999999999
Q ss_pred CChHHHHHHHHhcccCcHHHHHHHHHHhccCCC--cccCCCcchH---HHHHHh-cccccCCCCcccccccchhhHHHHH
Q 002165 489 LSFDASVLVLKFGEIGMLREGILLGILMDTQPL--PILHPFGDDA---LFAEYT-GCYFGGDGNTRLLTGRKEMVIMGNL 562 (957)
Q Consensus 489 l~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~--~~~~P~~~~~---~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~l 562 (957)
+||++|+||+.+.+.||+.|+++|||+|++++. .|..+.+.++ ..+..+ ..+.+ ..| ...+++..+
T Consensus 466 ldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-------~~~d~~~ll 537 (845)
T COG1643 466 LDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN-AAD-------PRGDHLLLL 537 (845)
T ss_pred CChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc-CCC-------cchHHHHHH
Confidence 999999999999999999999999999998871 3666665544 233222 22222 000 123588888
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHh-cCC
Q 002165 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR-FRP 634 (957)
Q Consensus 563 ~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r-~~~ 634 (957)
++|..|.....++ . ......||+.++++.++|.++..++.+++..+.+ ++.
T Consensus 538 ~~~~~~i~~~~~~--~-------------------~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~ 589 (845)
T COG1643 538 EAFPDRIARKRAK--G-------------------EYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGR 589 (845)
T ss_pred HHHHHHHHhhhcc--c-------------------hhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccc
Confidence 9999998754311 1 1235789999999999999999999999998877 443
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-91 Score=784.50 Aligned_cols=575 Identities=28% Similarity=0.385 Sum_probs=459.7
Q ss_pred CCccccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC--------cEEEeccHHHHHHHHHHHHH
Q 002165 18 FTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQPRRFAVVAVAKMVA 89 (957)
Q Consensus 18 ~~~~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~--------~Iivt~Prrlaa~~va~rva 89 (957)
.++..|..|||....++|+++|..|.+|||||+||||||||+||||+|+|++ .|.||||||+||+++|+||+
T Consensus 247 EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 247 EIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999999999999999999863 69999999999999999999
Q ss_pred hhcCCccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC--
Q 002165 90 KGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-- 167 (957)
Q Consensus 90 ~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-- 167 (957)
.|+|. +|..|||+||++....++|.|.|||+|+|++++.++.+ +..|++|||||||||++++|+|+++|.++...|
T Consensus 327 ~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 327 FELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred HHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 99997 99999999999999999999999999999999998753 669999999999999999999999998887554
Q ss_pred --------CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCcccccccc
Q 002165 168 --------NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (957)
Q Consensus 168 --------~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~ 239 (957)
..+|+|+||||+-.+.|.+--... +.+.+++.++. +.|||.+.|-...
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LF--pi~pPlikVdA----RQfPVsIHF~krT------------------ 460 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLF--PIPPPLIKVDA----RQFPVSIHFNKRT------------------ 460 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceec--CCCCceeeeec----ccCceEEEeccCC------------------
Confidence 379999999999777666322111 12334666654 7899988763210
Q ss_pred ccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC--------------------
Q 002165 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------- 299 (957)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-------------------- 299 (957)
.. +...-..+-...||+..| .|.||||+.|..+++.+++.|++.
T Consensus 461 -----~~---------DYi~eAfrKtc~IH~kLP--~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~ 524 (1172)
T KOG0926|consen 461 -----PD---------DYIAEAFRKTCKIHKKLP--PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKEL 524 (1172)
T ss_pred -----Cc---------hHHHHHHHHHHHHhhcCC--CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccc
Confidence 00 111222345677888887 579999999999999998887500
Q ss_pred -----------------------------------------------------------------------------CCC
Q 002165 300 -----------------------------------------------------------------------------SSF 302 (957)
Q Consensus 300 -----------------------------------------------------------------------------~~~ 302 (957)
...
T Consensus 525 k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~p 604 (1172)
T KOG0926|consen 525 KENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGP 604 (1172)
T ss_pred ccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCc
Confidence 002
Q ss_pred cEEEEecCCCCHHHHHHHHhccc-CCceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHH
Q 002165 303 FKVHILHSSVDTEQALMAMKICK-SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (957)
Q Consensus 303 ~~v~~lhs~l~~~er~~i~~~f~-~~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~Q 381 (957)
+.|++||+-|+.+.|.+++.... +.|-+|||||+||+|+|||+|+||||||++|++.||..+++++|.+.|||||++.|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 45899999999999999998754 45699999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCeEEEeechhhhh-hccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHH
Q 002165 382 RRGRTGRTCDGQVYRLVTKSFFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLL 460 (957)
Q Consensus 382 R~GRAGR~~~G~~~~L~s~~~~~-~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L 460 (957)
|+|||||++||+|||||+...|+ .++++..|||++.|.++++|+|++ ++.+.+..|+|++||++.++..|...|
T Consensus 685 RAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs-----MnI~kVvnFPFPtpPd~~~L~~Aer~L 759 (1172)
T KOG0926|consen 685 RAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS-----MNIDKVVNFPFPTPPDRSALEKAERRL 759 (1172)
T ss_pred hccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh-----cCccceecCCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999997 799999999999999999999964 556677788999999999999999999
Q ss_pred HHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCccc-------CC----Ccc
Q 002165 461 DHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPIL-------HP----FGD 529 (957)
Q Consensus 461 ~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~-------~P----~~~ 529 (957)
..|||||.+ | .+|++|+.|+.|||.|+.+|||+.+.+.+|+--++.++++||++. +++ .| ++.
T Consensus 760 ~~LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e-~~i~~~~ll~n~~~r~~~~ 833 (1172)
T KOG0926|consen 760 KALGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE-VLIVAASLLPNPLIREFEP 833 (1172)
T ss_pred HHhcccccc---C--CcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc-hhhhhhhcccccccccCCc
Confidence 999999984 6 599999999999999999999999999999999999999998764 332 11 111
Q ss_pred hH--------------H-------HHHHhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002165 530 DA--------------L-------FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFD 588 (957)
Q Consensus 530 ~~--------------~-------~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~~~~l~~~~~~~ 588 (957)
++ . ...++.+|...++| -+.+|..+.||.+
T Consensus 834 eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd--------~l~Ll~Av~a~ey--------------------- 884 (1172)
T KOG0926|consen 834 EEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSD--------ALVLLSAVSAAEY--------------------- 884 (1172)
T ss_pred chhhccccccccccHHHHHHHHHHHHHHHhhhccCCcc--------HHHHHHHHHHHHh---------------------
Confidence 11 0 01112223222332 3333333333321
Q ss_pred hhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccc-----cCCCC--------------------
Q 002165 589 ETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLG-----TSNGL-------------------- 643 (957)
Q Consensus 589 ~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~-----~~~~~-------------------- 643 (957)
......||..|||..++|.+++++|.||..++.+..++-+. +...+
T Consensus 885 ---------~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrV 955 (1172)
T KOG0926|consen 885 ---------AENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRV 955 (1172)
T ss_pred ---------hhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 12234599999999999999999999999988633222110 11110
Q ss_pred -----CCCCC-----Cccccccc--cccCCCCCCCCCCccCCCCCCCCccccc-ccc
Q 002165 644 -----PTYYD-----PYEFEHTC--LLNCDPPRDMDPLAADNEHLGPSFEAKK-CVA 687 (957)
Q Consensus 644 -----~~~~~-----~~~~~h~~--~~~~~~~~v~~~e~~~t~~~~~~~~~r~-~~~ 687 (957)
..+|+ .--|.|.| |+..-|+||+|-|+..|- .+++-. +++
T Consensus 956 Ark~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~----~~~~~~~v~~ 1008 (1172)
T KOG0926|consen 956 ARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTN----RPYMHGGVTA 1008 (1172)
T ss_pred HHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcC----CcccccceEE
Confidence 02333 22355655 777999999999999998 665444 443
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.6e-77 Score=726.17 Aligned_cols=440 Identities=28% Similarity=0.350 Sum_probs=388.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
|||+.+..++++++.+++++||+|+|||||||++|+++++... .+|+|++|||++|++++++++++++..+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 8999999999999999999999999999999999999998643 48999999999999999999999999999999999
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCChH
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADIT 182 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld~~ 182 (957)
+++++..+.+++|+|+|+|+|++++..+. .+.+|++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~-~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDP-ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCc-ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999888899999999999999998754 56799999999999999999999999887765 57899999999999999
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHH
Q 002165 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (957)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (957)
.+.+||+. .+++.+++ +.|+++++|++... .......+.
T Consensus 160 ~l~~~l~~------~~vI~~~g----r~~pVe~~y~~~~~-------------------------------~~~~~~~v~ 198 (819)
T TIGR01970 160 RLSSLLPD------APVVESEG----RSFPVEIRYLPLRG-------------------------------DQRLEDAVS 198 (819)
T ss_pred HHHHHcCC------CcEEEecC----cceeeeeEEeecch-------------------------------hhhHHHHHH
Confidence 99999864 33455544 46788887753100 001111122
Q ss_pred HHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-CCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccC
Q 002165 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (957)
Q Consensus 263 ~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~G 340 (957)
..+..+.... .|+||||+||+++|+.+++.|... ..++.+.++||+|++++|..+++.|++|+ ||||||||||+|
T Consensus 199 ~~l~~~l~~~---~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 199 RAVEHALASE---TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 2333333222 479999999999999999999752 25789999999999999999999998876 999999999999
Q ss_pred ccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhccCCCCCchhcCCHH
Q 002165 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLR 420 (957)
Q Consensus 341 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l~~~~~PEI~r~~L~ 420 (957)
||||+|+||||+|++|.+.||+.++++.+.+.|||+++|.||+|||||.++|+||+||+++++..|.++..|||+|++|+
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLS 355 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHh
Q 002165 421 LQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKF 500 (957)
Q Consensus 421 ~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~ 500 (957)
+++|+++.++ +.++..| +|++||+.+++..|++.|..+||||.+ | +||++|+.|++||+||++|+||+.+
T Consensus 356 ~~~L~l~~~g---~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~ 425 (819)
T TIGR01970 356 GLALELAQWG---AKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSA 425 (819)
T ss_pred HHHHHHHHcC---CCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999998655 3444444 899999999999999999999999974 6 5999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHhccCC
Q 002165 501 GEIGMLREGILLGILMDTQP 520 (957)
Q Consensus 501 ~~~~c~~e~l~iaa~ls~~~ 520 (957)
..+||..++++|||+|+.++
T Consensus 426 ~~~~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 426 HSTGLAALACDLAALLEERG 445 (819)
T ss_pred hhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999765
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-74 Score=704.79 Aligned_cols=440 Identities=25% Similarity=0.322 Sum_probs=381.8
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.+|||+.+..++++++.+++++|++|+|||||||++|+++++... .+|+|++|||++|.+++++++.+++..+|..||
T Consensus 2 ~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 359999999999999999999999999999999999999998653 489999999999999999999999999999999
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCC
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld 180 (957)
|.+++++..+.+++|+|+|+|+|++++..+. .+.+|++|||||+|||++++|+++++++.++. .++++|+|+||||++
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 9999999888899999999999999988654 56799999999999999999999998887765 478999999999999
Q ss_pred hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHH
Q 002165 181 ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKL 260 (957)
Q Consensus 181 ~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (957)
.+.+.+||.. .+++.+++ +.|+++.+|+.... .....+.
T Consensus 161 ~~~l~~~~~~------~~~I~~~g----r~~pV~~~y~~~~~-------------------------------~~~~~~~ 199 (812)
T PRK11664 161 NDRLQQLLPD------APVIVSEG----RSFPVERRYQPLPA-------------------------------HQRFDEA 199 (812)
T ss_pred HHHHHHhcCC------CCEEEecC----ccccceEEeccCch-------------------------------hhhHHHH
Confidence 9999998863 23444444 45777777753100 0001111
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC-CCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccc
Q 002165 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE 338 (957)
Q Consensus 261 i~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae 338 (957)
+...+..+.... .|++|||+||+++|+.+++.|.. ...++.+.++||+|+.++|..++..|++|+ +|||||||||
T Consensus 200 v~~~l~~~l~~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAE 276 (812)
T PRK11664 200 VARATAELLRQE---SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAE 276 (812)
T ss_pred HHHHHHHHHHhC---CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHH
Confidence 222233333222 47999999999999999999985 235688999999999999999999998877 9999999999
Q ss_pred cCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhhccCCCCCchhcCC
Q 002165 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLS 418 (957)
Q Consensus 339 ~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~l~~~~~PEI~r~~ 418 (957)
+|||||+|++|||+|++|...||+..+++.+.+.|||+++|.||+|||||.++|+||+||++++|..++++..|||+|++
T Consensus 277 rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~d 356 (812)
T PRK11664 277 TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSD 356 (812)
T ss_pred hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHH
Q 002165 419 LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVL 498 (957)
Q Consensus 419 L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll 498 (957)
|++++|.++.++ +.++..| +|+|||+..++.+|++.|..+||||++ | +||++|+.|++||++|++|+||+
T Consensus 357 L~~~~L~l~~~g---~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll 426 (812)
T PRK11664 357 LSGLLLELLQWG---CHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLV 426 (812)
T ss_pred hHHHHHHHHHcC---CCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHH
Confidence 999999998655 3344444 999999999999999999999999984 6 59999999999999999999999
Q ss_pred HhcccCcHH--HHHHHHHHhcc
Q 002165 499 KFGEIGMLR--EGILLGILMDT 518 (957)
Q Consensus 499 ~~~~~~c~~--e~l~iaa~ls~ 518 (957)
.+.++||.. .+..+||+|+.
T Consensus 427 ~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 427 AAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred HHHhcCchhhHHHHHHHHhhcc
Confidence 999998653 56667777653
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=5.1e-56 Score=506.16 Aligned_cols=556 Identities=28% Similarity=0.423 Sum_probs=449.4
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-------CcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 21 ~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-------~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
.+|.+||+..+.++|++++.+|++++|.++||+|||||+.|+|||.-. ..++++||||+.|+++++|++.+++
T Consensus 372 a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 372 AQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred hhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 568899999999999999999999999999999999999999998743 3689999999999999999999999
Q ss_pred CccCCeeEEeeecccccC-CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 94 CELGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~~~~~-~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
..+|..|||.+|++..++ +...|.+||-|.|++.+.+. +..++|+|+||.|||.+++||++.+++.+....+++++
T Consensus 452 e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred Hhhcccccccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 999999999999998875 45689999999999998875 34899999999999999999999999999999999999
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccc------------c---
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS------------S--- 237 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~------------~--- 237 (957)
++||||+|.+.|..||+.+ +...++ +++||+..+|++++........+.+.... .
T Consensus 529 ~lmsatIdTd~f~~~f~~~------p~~~~~----grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~ 598 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSI------PDVTVH----GRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKG 598 (1282)
T ss_pred hhhhcccchhhhhhhhccc------cceeec----cccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcc
Confidence 9999999999999999873 333344 47899999999987655432211111000 0
Q ss_pred --------ccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC-----CCCCcE
Q 002165 238 --------LRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-----LSSFFK 304 (957)
Q Consensus 238 --------~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-----~~~~~~ 304 (957)
..|+.....++...........++..++.+|.... ..|.||||+|++..+..+...|.. ....+.
T Consensus 599 ~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~--i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ 676 (1282)
T KOG0921|consen 599 RNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRN--IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE 676 (1282)
T ss_pred cccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccC--CccceeeecCchHHhhhhhhhhhhhhhhccchhcc
Confidence 00000000000001111123455666666655433 357999999999999988877652 345688
Q ss_pred EEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhc
Q 002165 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (957)
Q Consensus 305 v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (957)
++++|+.++..++.++++....+. ++|++||+++++|||.++++|||.+..+.+.|-....+..+..+|.|+-+..||.
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred cccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 999999999999999888776555 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEeechhhhhhccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHc
Q 002165 384 GRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (957)
Q Consensus 384 GRAGR~~~G~~~~L~s~~~~~~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~l 463 (957)
||+||.++|.|+++.+...|+.+..+..||+.|.+|.++.|.++.+ .++....|+...+.||+.+++..+-..|.++
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll---~l~SI~~fl~kal~~~p~dav~e~e~~l~~m 833 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLL---RLGSIGEFLGKALQPPPYDAVIEAEAVLREM 833 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHH---HhhhHHHHHhhccCCCchhhccCchHHHHHh
Confidence 9999999999999999999999999999999999999999988743 3566778999999999999999999999999
Q ss_pred CccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHH-HHHHhccccc
Q 002165 464 RALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFG 542 (957)
Q Consensus 464 gal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~-~~~~~~~~~~ 542 (957)
+++|.+ ..+|++|+.++.+|++|.++++++.+..+||..-++..|+.++... ++. |.+...- ..-.+.
T Consensus 834 ~~ld~n-----~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~-~~~-~~~~~~~rl~g~q~---- 902 (1282)
T KOG0921|consen 834 GALDAN-----DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPT-PFV-PREKHHSRLSGTQR---- 902 (1282)
T ss_pred hhhhcc-----CcccchhhhhhhccCcccccceeeechhhccchhhhhhhccccccc-ccc-cccccccccccchh----
Confidence 999984 3799999999999999999999999999999998888887776432 332 2111100 000111
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHH
Q 002165 543 GDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELY 622 (957)
Q Consensus 543 ~~~d~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~ 622 (957)
..+|.|-+++.+...+-+.|++...+. ...+++||....|+.+.|....+.+
T Consensus 903 ------~~~g~kfsdhva~~~v~q~~r~~~q~g----------------------a~~e~efc~r~~l~~~~~~~t~~a~ 954 (1282)
T KOG0921|consen 903 ------KFAGNKFSDHVAIVSVIQGYREAVQMG----------------------AAAEREFCERYSLSNPVLKMTDGAR 954 (1282)
T ss_pred ------hccccccccchhhhhhhhhhHHHhhhh----------------------hhhhhhHhHhhhhcchhhhhhhhhH
Confidence 223344455666666777777643322 2347899999999999999999999
Q ss_pred HHHHHHHHhcC
Q 002165 623 EDILNAVHRFR 633 (957)
Q Consensus 623 ~qL~~~~~r~~ 633 (957)
.||+..|+...
T Consensus 955 ~ql~d~L~q~~ 965 (1282)
T KOG0921|consen 955 RQLIDVLRQCS 965 (1282)
T ss_pred HHHHHHHHhcc
Confidence 99999998654
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.6e-53 Score=507.88 Aligned_cols=395 Identities=22% Similarity=0.275 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----------------CCCcEEEeccHHHHHHHHHHHHHhhc
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------------NMEPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----------------~~~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
.+|+++++.+.+++++|++|+||||||+|+||++++. ....|+|++|||.+|.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999998763 11379999999999999999988766
Q ss_pred CCccCCeeEEeeeccccc-------CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh
Q 002165 93 NCELGGEVGYHIGHSKHL-------SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL 165 (957)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~~-------~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~ 165 (957)
|......+...+++.... ....+|+++|++..+. .+.++++|||||||||+..+|+++++++.+..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~-------~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~ 319 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN-------KLFDYGTVIIDEVHEHDQIGDIIIAVARKHID 319 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc-------ccccCCEEEccccccCccchhHHHHHHHHhhh
Confidence 542111122233332221 2246899999874221 24589999999999999999999999987654
Q ss_pred cCCCceEEEecccCC--hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCC
Q 002165 166 KKNDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (957)
Q Consensus 166 ~~~~lklIlmSATld--~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (957)
.. .|+++||||++ .+.+.+||+. ..++.+++. ..++++.+|++......
T Consensus 320 ~~--rq~ILmSATl~~dv~~l~~~~~~------p~~I~I~gr---t~~pV~~~yi~~~~~~~------------------ 370 (675)
T PHA02653 320 KI--RSLFLMTATLEDDRDRIKEFFPN------PAFVHIPGG---TLFPISEVYVKNKYNPK------------------ 370 (675)
T ss_pred hc--CEEEEEccCCcHhHHHHHHHhcC------CcEEEeCCC---cCCCeEEEEeecCcccc------------------
Confidence 32 38999999994 5678888864 234455542 34788887764311000
Q ss_pred CCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhc
Q 002165 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (957)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~ 323 (957)
....+ ..... . .++..+....+..++++|||+||+++++.+++.|....+++.+.++||+|++.+ +.++.
T Consensus 371 ~~~~y----~~~~k-~---~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e--q~l~~ 440 (675)
T PHA02653 371 NKRAY----IEEEK-K---NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID--EILEK 440 (675)
T ss_pred cchhh----hHHHH-H---HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH--HHHHH
Confidence 00000 00011 1 112222221222246899999999999999999986544689999999999763 33444
Q ss_pred c-cCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechh
Q 002165 324 C-KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 324 f-~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~ 401 (957)
| ++++ +||||||+||+|||||+|++|||+|+++.+. +..+. ..|||+++|.||+|||||.++|.||+||+++
T Consensus 441 ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~ 514 (675)
T PHA02653 441 VYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLD 514 (675)
T ss_pred HhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHH
Confidence 4 5565 9999999999999999999999999877542 22222 4699999999999999999999999999998
Q ss_pred hhhhccCCCCCchhcCC---HHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccC
Q 002165 402 FFGTLEDHECPAILRLS---LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 478 (957)
Q Consensus 402 ~~~~l~~~~~PEI~r~~---L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT 478 (957)
++ .| |.|.+ |..++|+++.++. +.+.. .|+|||+.+++..|++.|..+||+|+ +||
T Consensus 515 ~~-------~p-I~ri~~~~L~~~vL~lk~~g~---~~~~~---~~ldpP~~~~l~~A~~~L~~lga~~~-------~l~ 573 (675)
T PHA02653 515 LL-------KP-IKRIDSEFLHNYILYAKYFNL---TLPED---LFVIPSNLDRLRKTEEYIDSFNISIE-------KWY 573 (675)
T ss_pred Hh-------HH-HHHHhHHHHHHHHHHHHHcCC---CCccc---ccCCCCCHHHHHHHHHHHHHcCCCch-------hhh
Confidence 74 24 77776 8899999987653 33332 38999999999999999999998865 499
Q ss_pred HH--HHHHHhCCCChHHHHHHHHhc
Q 002165 479 FY--GRLLASFSLSFDASVLVLKFG 501 (957)
Q Consensus 479 ~l--G~~~a~lpl~p~~~~~ll~~~ 501 (957)
.+ |+.|+-+ +.||+++.++
T Consensus 574 ~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 574 EILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred hhhccccHHHH----HHhHHHhccc
Confidence 99 9999988 8999887653
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-37 Score=382.33 Aligned_cols=419 Identities=14% Similarity=0.171 Sum_probs=277.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
..++++|.++++.+.++++++++||||||||+++.+++++.. ..+++++.|++.+|.+.++.+.... .+|..|+..
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~~ 98 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKIS 98 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEEE
Confidence 457999999999999999999999999999988887776542 2456777799999999988876532 346666665
Q ss_pred eecccc---cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccccc---HHHHHHHHHHhcCCCceEEEecc
Q 002165 104 IGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 104 v~~~~~---~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d---~ll~~lk~l~~~~~~lklIlmSA 177 (957)
++..+. .....+|+|+|||.+...+......+.++++|||||+|.. .+.+ .+..++..+...+++.|+|+|||
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l-~d~~rg~~le~ll~~~~~~~~~~riI~lSA 177 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII-GDEDRGPTLETVLSSARYVNPDARILALSA 177 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc-cCCCccHHHHHHHHHHHhcCcCCcEEEEeC
Confidence 543221 1246799999999998887765544669999999999953 3222 34445555555677899999999
Q ss_pred cC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeee--eehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR--VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~--v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
|+ +.+.+++|++.. .+.... +..+.+ +.|.... +.... . ...
T Consensus 178 Tl~n~~~la~wl~~~-------~~~~~~----r~vpl~~~i~~~~~~------------------~~~~~----~--~~~ 222 (674)
T PRK01172 178 TVSNANELAQWLNAS-------LIKSNF----RPVPLKLGILYRKRL------------------ILDGY----E--RSQ 222 (674)
T ss_pred ccCCHHHHHHHhCCC-------ccCCCC----CCCCeEEEEEecCee------------------eeccc----c--ccc
Confidence 98 788999998631 111111 111111 1110000 00000 0 000
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC-----------------------CcEEEEecCC
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-----------------------FFKVHILHSS 311 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-----------------------~~~v~~lhs~ 311 (957)
.... .++..... .++++|||++++++++.++..|..... ...+..+||+
T Consensus 223 ~~~~----~~i~~~~~----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 223 VDIN----SLIKETVN----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred ccHH----HHHHHHHh----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 0111 22222211 146999999999999999888753211 1247889999
Q ss_pred CCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC
Q 002165 312 VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (957)
Q Consensus 312 l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 390 (957)
|+.++|..+++.|++|. +|||||+++++|||+|+..+||+ +. .+|+. ....++|.+++.||+|||||.+
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCC
Confidence 99999999999999988 99999999999999999988885 21 12332 2235789999999999999984
Q ss_pred ---CCeEEEeec-hhhhh---hccCCCCCchhcCCHH------HHHHHHhhhh-cccCCChhHhh-hccc--CCCC---H
Q 002165 391 ---DGQVYRLVT-KSFFG---TLEDHECPAILRLSLR------LQVLLICCAE-SKAISDPKVLL-QKAL--DPPY---P 450 (957)
Q Consensus 391 ---~G~~~~L~s-~~~~~---~l~~~~~PEI~r~~L~------~~iL~l~~~~-~~~l~~~~~~l-~~~l--~pP~---~ 450 (957)
.|.++.+.. +++++ .+.. ..|+-..+.|. ..+|.....+ ..+..+...|+ ..|+ ++++ .
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~-~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~ 443 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLS-GEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEID 443 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHc-CCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHH
Confidence 677776644 23232 2211 12322222221 1122222111 11112222331 1222 4332 5
Q ss_pred HHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcccC
Q 002165 451 EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIG 504 (957)
Q Consensus 451 ~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~ 504 (957)
+.+.+|++.|.+.|+|+.+ +.+.+|++|++++.+|++|..++.+..+....
T Consensus 444 ~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 444 YYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 6799999999999999863 45679999999999999999999988776543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.7e-36 Score=369.52 Aligned_cols=425 Identities=19% Similarity=0.180 Sum_probs=278.6
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 27 Pi~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
-++++|.++++. +.++++++++||||||||..+...++.. ..++++++.|++.+|.+..+.+.. ++ .+|..|+-.
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~-~~-~~g~~v~~~ 100 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFER-FE-ELGVRVGIS 100 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHH-hh-cCCCEEEEE
Confidence 378999999998 7889999999999999998776666553 235788888999999999888874 32 234444433
Q ss_pred eeccc---ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccH---HHHHHHHHHhcCCCceEEEecc
Q 002165 104 IGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDL---VLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 104 v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~---ll~~lk~l~~~~~~lklIlmSA 177 (957)
.+..+ ......+|+|+||+.+...+.+....+.++++|||||+| +..+.++ +..++.++....++.|+|+|||
T Consensus 101 tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~~~qii~lSA 179 (737)
T PRK02362 101 TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNPDLQVVALSA 179 (737)
T ss_pred eCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 33211 122467999999999988887654445699999999999 4444332 3344555555678899999999
Q ss_pred cC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
|+ |++.+.+|++... +.....|.. ....+.+-.. +. +... . ..........
T Consensus 180 Tl~n~~~la~wl~~~~----~~~~~rpv~-----l~~~v~~~~~----~~-------------~~~~-~-~~~~~~~~~~ 231 (737)
T PRK02362 180 TIGNADELADWLDAEL----VDSEWRPID-----LREGVFYGGA----IH-------------FDDS-Q-REVEVPSKDD 231 (737)
T ss_pred cCCCHHHHHHHhCCCc----ccCCCCCCC-----CeeeEecCCe----ec-------------cccc-c-ccCCCccchH
Confidence 97 7889999986311 000000100 0000111000 00 0000 0 0000000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC----------------------------------C
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------------F 302 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~----------------------------------~ 302 (957)
.... +..... .++++||||+++++++.++..|..... .
T Consensus 232 ~~~~----~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 232 TLNL----VLDTLE----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred HHHH----HHHHHH----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 2222 222221 146999999999999988877753210 1
Q ss_pred cEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHH
Q 002165 303 FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (957)
Q Consensus 303 ~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~Q 381 (957)
..+..+||+|++++|..+++.|++|. +|||||+++++|||+|++++||+. ..+||+..+. .|+|.++|.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Q 374 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQ 374 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHH
Confidence 36889999999999999999999998 999999999999999999999963 3347764432 5779999999
Q ss_pred hcCCCCCCC---CCeEEEeechh-h----hhhccCCCCCchhcCC------HHHHHHHHhhhh-cccCCChhHhh-hccc
Q 002165 382 RRGRTGRTC---DGQVYRLVTKS-F----FGTLEDHECPAILRLS------LRLQVLLICCAE-SKAISDPKVLL-QKAL 445 (957)
Q Consensus 382 R~GRAGR~~---~G~~~~L~s~~-~----~~~l~~~~~PEI~r~~------L~~~iL~l~~~~-~~~l~~~~~~l-~~~l 445 (957)
|+|||||.+ .|.++.++... . |+.+.. ..||-..+. |...++.....+ .....+...|+ ..|+
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~ 453 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFY 453 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChH
Confidence 999999984 49999998653 1 222221 233333332 334444433222 11111222221 1222
Q ss_pred CCC------CHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcc
Q 002165 446 DPP------YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (957)
Q Consensus 446 ~pP------~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~ 502 (957)
..+ -.+.+..+++.|.+.|+|+.++ +.+.+|++|++++.++++|..+..+..+..
T Consensus 454 ~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 454 ATQTDDTGRLERVVDDVLDFLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HhhccchHHHHHHHHHHHHHHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 222 2356899999999999998732 447799999999999999999998887654
No 16
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=345.88 Aligned_cols=316 Identities=19% Similarity=0.248 Sum_probs=236.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcC---------CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN---------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~---------~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
.+++|.+.++.++.++++|..|.|||||| +++|.++.-.. ...++|..|+|.+|.|+.+...+ ++..+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~-~~~~~ 192 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE-FGKSL 192 (519)
T ss_pred CchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH-HcCCC
Confidence 57899999999999999999999999999 55665544322 13689999999999998876644 33333
Q ss_pred C--CeeEEe---e-ecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc-CCC
Q 002165 97 G--GEVGYH---I-GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND 169 (957)
Q Consensus 97 g--~~Vgy~---v-~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-~~~ 169 (957)
+ ..+-|- . .+......+.+|+++|||+|++++..+.+.+.+++++|+|||| |+++.+|-..+-+.+... +++
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 3 111111 0 1233456679999999999999999998888999999999999 999999999998888888 666
Q ss_pred ceEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 170 lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.|+++.|||.+.+ .++.-|- .....+.+........ ...+.++
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl--~~~~~i~ig~~~~~~a----------~~~i~qi----------------------- 316 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFL--NNPIQINVGNKKELKA----------NHNIRQI----------------------- 316 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHh--cCceEEEecchhhhhh----------hcchhhh-----------------------
Confidence 6899999998654 3333332 1111122111100000 0000000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
.+..........+..++..+. ++.++++||||.+++.++++...|+. .++.+..+||+.++.||..+++.|++|
T Consensus 317 -ve~~~~~~K~~~l~~lL~~~~---~~~~~KvIIFc~tkr~~~~l~~~l~~--~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 317 -VEVCDETAKLRKLGKLLEDIS---SDSEGKVIIFCETKRTCDELARNLRR--KGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred -hhhcCHHHHHHHHHHHHHHHh---ccCCCcEEEEecchhhHHHHHHHHHh--cCcceeeecccccHHHHHHHHHhcccC
Confidence 000112233344445555555 23367999999999999999999984 348899999999999999999999999
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
+ .||||||+|++|||||+|++||+ ||+|.+++.| +||.||+||. +.|.+|.+++...+.
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdY----------VHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDY----------VHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred CcceEEEcccccccCCCccccEEEe--------CCCCCCHHHH----------HhhcCccccCCCCceEEEEEeHHHHH
Confidence 9 99999999999999999999999 9999988887 9999999997 789999999987664
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-37 Score=324.61 Aligned_cols=311 Identities=22% Similarity=0.311 Sum_probs=231.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++|+.++.|++||..|+||||||..+..+++...+ -..+|..|+|.+|.|++..+ +-+|..+|-.|..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAV 162 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEE
Confidence 46899999999999999999999999999666666655432 25777788888889988765 3345555554444
Q ss_pred eeecc------cccCCCCcEEEEcHHHHHHHHH-ccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 103 HIGHS------KHLSERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 103 ~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~-~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.++.. ....++++|+|+|||.|.+.+. .+.+++..++++|+|||| |.++.||...+-+.+...+...|.+++
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~Lf 241 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLF 241 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEE
Confidence 44443 3457889999999999999998 667777899999999999 999999998887777777888999999
Q ss_pred cccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCCh
Q 002165 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (957)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (957)
|||+..+ ..+.... .-..++++. ++.. | .-++.+. ..|...+..+ .+
T Consensus 242 sATMt~k-v~kL~ra-sl~~p~~v~-~s~k-----y----~tv~~lk---------------Q~ylfv~~k~-K~----- 288 (476)
T KOG0330|consen 242 SATMTKK-VRKLQRA-SLDNPVKVA-VSSK-----Y----QTVDHLK---------------QTYLFVPGKD-KD----- 288 (476)
T ss_pred Eeecchh-hHHHHhh-ccCCCeEEe-ccch-----h----cchHHhh---------------hheEeccccc-cc-----
Confidence 9998633 2332221 111222221 1110 0 0011111 1111111111 00
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEc
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaT 334 (957)
..+.+|..... ++.+||||++....+.++-.|+ ..++...++||.|++..|...++.|+.+. .|+|||
T Consensus 289 -------~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~--~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 289 -------TYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLR--NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred -------hhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHH--hcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 11122222221 4799999999999999999998 45699999999999999999999999887 999999
Q ss_pred cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
|+|++|+|||.|++||| ||.|.....| +||+||+||. ++|+++.|++.-+
T Consensus 358 DVaSRGLDip~Vd~VVN--------yDiP~~skDY----------IHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVN--------YDIPTHSKDY----------IHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred chhcccCCCCCceEEEe--------cCCCCcHHHH----------HHHcccccccCCCcceEEEEehhh
Confidence 99999999999999999 9999977666 9999999999 7899999999733
No 18
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.1e-35 Score=357.97 Aligned_cols=432 Identities=16% Similarity=0.099 Sum_probs=274.4
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
-++++|.++++. +.+++++++++|||||||..+..+++.. ...+++++.|.+.++.+..+++... . .+|..|+.
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~-~~g~~v~~ 100 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-E-KLGLRVAM 100 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-h-hcCCEEEE
Confidence 368999999986 7899999999999999997766555433 2347788889999999988887652 1 34555554
Q ss_pred eeeccc---ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 103 ~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
..+..+ ....+++|+|+||+++...+......+.++++|||||+| +..+.+....+...+.....+.|+|+||||+
T Consensus 101 ~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-~l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 101 TTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-LIGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred EeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC-ccCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 433221 123468999999999988877654456699999999999 3433333333222233335678999999998
Q ss_pred -ChHHHHHHHhhcCCCceeEEEEecCCCccceeee--eeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQR--RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 180 -d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v--~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
|++.+.+|++.. .+.... +..+. .+.+-. ..+... . ........
T Consensus 180 ~n~~~la~wl~~~-------~~~~~~----rpv~l~~~~~~~~------------------~~~~~~--~--~~~~~~~~ 226 (720)
T PRK00254 180 GNAEELAEWLNAE-------LVVSDW----RPVKLRKGVFYQG------------------FLFWED--G--KIERFPNS 226 (720)
T ss_pred CCHHHHHHHhCCc-------cccCCC----CCCcceeeEecCC------------------eeeccC--c--chhcchHH
Confidence 889999998641 100000 00010 000000 000000 0 00000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-----------------------C--------CCcEE
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----------------------S--------SFFKV 305 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-----------------------~--------~~~~v 305 (957)
.. ..+...... ++++||||++++.++.++..|... . ....|
T Consensus 227 ~~----~~~~~~i~~----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv 298 (720)
T PRK00254 227 WE----SLVYDAVKK----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGV 298 (720)
T ss_pred HH----HHHHHHHHh----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCE
Confidence 11 222222221 468999999999998776555210 0 01358
Q ss_pred EEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcC
Q 002165 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (957)
Q Consensus 306 ~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (957)
.++||+|++++|..+++.|+.|. +|||||+++++|||+|++++||..+ .+|+ . +...+++.+++.||+|
T Consensus 299 ~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~-----~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 299 AFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-N-----FGWEDIPVLEIQQMMG 368 (720)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-C-----CCceeCCHHHHHHhhh
Confidence 99999999999999999999998 9999999999999999999999633 2343 1 1223457789999999
Q ss_pred CCCCC---CCCeEEEeechhh----hhhccCCCCCchhcC------CHHHHHHHHhhhhcccCCChh---Hhh---hccc
Q 002165 385 RTGRT---CDGQVYRLVTKSF----FGTLEDHECPAILRL------SLRLQVLLICCAESKAISDPK---VLL---QKAL 445 (957)
Q Consensus 385 RAGR~---~~G~~~~L~s~~~----~~~l~~~~~PEI~r~------~L~~~iL~l~~~~~~~l~~~~---~~l---~~~l 445 (957)
||||. ..|.++.+.+... ++.+. ...||-+.. .|...++..... ..+.... +++ +.+.
T Consensus 369 RAGR~~~d~~G~~ii~~~~~~~~~~~~~~~-~~~pe~l~s~l~~es~l~~~ll~~i~~--~~~~~~~~~~~~l~~Tf~~~ 445 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVATTEEPSKLMERYI-FGKPEKLFSMLSNESAFRSQVLALITN--FGVSNFKELVNFLERTFYAH 445 (720)
T ss_pred ccCCCCcCCCceEEEEecCcchHHHHHHHH-hCCchhhhccCCchHHHHHHHHHHHHh--CCCCCHHHHHHHHHhCHHHH
Confidence 99997 4699998886432 33221 122222221 123333333221 1222222 121 1222
Q ss_pred CCCC----HHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcc----cCcHHHHHHHHHHh
Q 002165 446 DPPY----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE----IGMLREGILLGILM 516 (957)
Q Consensus 446 ~pP~----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~----~~c~~e~l~iaa~l 516 (957)
..|+ .+.+..+++.|.+.|.|+. +.++.+.+|++|++++.++|+|..++.+..+.. ......++-+.+..
T Consensus 446 ~~~~~~~~~~~v~~~l~~L~~~~~i~~-~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 446 QRKDLYSLEEKAKEIVYFLLENEFIDI-DLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred hhcChHhHHHHHHHHHHHHHHCCCeEE-cCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 2344 3567888999999999986 333567899999999999999999998876543 23445555555443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.2e-35 Score=345.49 Aligned_cols=310 Identities=20% Similarity=0.232 Sum_probs=222.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++++.+.++++++++||||||||+.+..++++... ..++++.|++.+|.|+++.+........+..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 67999999999999999999999999999887777765421 2467777888888998887654321111222322
Q ss_pred eeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
..+.. .....+++|+|+|||+|++.+..+.+.+.++++||||||| ++++.+|...+...+...+++.|++++|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 22211 1234678999999999999998877777799999999999 7788888776666666667788999999
Q ss_pred ccCChH--HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 177 ATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 177 ATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
||++.. .+...+. . .+..+......... .++..|.. .. .
T Consensus 186 AT~~~~~~~l~~~~~--~--~~~~i~~~~~~~~~---~i~~~~~~-------------------------------~~-~ 226 (460)
T PRK11776 186 ATYPEGIAAISQRFQ--R--DPVEVKVESTHDLP---AIEQRFYE-------------------------------VS-P 226 (460)
T ss_pred ecCcHHHHHHHHHhc--C--CCEEEEECcCCCCC---CeeEEEEE-------------------------------eC-c
Confidence 998643 3333321 1 12222111110000 01111000 00 0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
....+.+.++ ..... ++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|+++. +||||
T Consensus 227 ~~k~~~l~~l----l~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVa 298 (460)
T PRK11776 227 DERLPALQRL----LLHHQ--PESCVVFCNTKKECQEVADALNA--QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVA 298 (460)
T ss_pred HHHHHHHHHH----HHhcC--CCceEEEECCHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 1111222222 22222 46899999999999999999984 4588999999999999999999999988 99999
Q ss_pred ccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
|+++++|||||++++||+ ||.+...+.| .||+|||||. +.|.+|.|+++.+.
T Consensus 299 Tdv~~rGiDi~~v~~VI~--------~d~p~~~~~y----------iqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 299 TDVAARGLDIKALEAVIN--------YELARDPEVH----------VHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ecccccccchhcCCeEEE--------ecCCCCHhHh----------hhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999999999 8888755555 9999999999 67999999998654
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-35 Score=340.02 Aligned_cols=313 Identities=20% Similarity=0.253 Sum_probs=221.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC------------CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~------------~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
-.+++|.++++.+.++++++++||||||||+.+...+++.. ...++++.|++.+|.|+.+.+... ..
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l-~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL-AQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH-hc
Confidence 35799999999999999999999999999976655554311 136888899999999987765432 22
Q ss_pred ccCCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC-
Q 002165 95 ELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK- 167 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~- 167 (957)
..|..++..++... ....+.+|+|+|||+|++.+....+.+.++++||||||| +.++.++...+...+....
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i~~i~~~~~~ 187 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDIRWLFRRMPP 187 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHHHHHHHhCCC
Confidence 33444554443322 234568999999999999998877777899999999999 6777777655533332222
Q ss_pred -CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCC
Q 002165 168 -NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (957)
Q Consensus 168 -~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (957)
...+.+++|||++.......+..+..+..+.+ .+............+|.
T Consensus 188 ~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v--~~~~~~~~~i~~~~~~~---------------------------- 237 (423)
T PRK04837 188 ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEV--EPEQKTGHRIKEELFYP---------------------------- 237 (423)
T ss_pred ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEE--cCCCcCCCceeEEEEeC----------------------------
Confidence 23467899999976544333332222211111 11110000000000100
Q ss_pred CcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC
Q 002165 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (957)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~ 326 (957)
........+ ..+..... .+++||||+++..++.+++.|.. .++.+..+||++++++|..+++.|+.
T Consensus 238 ------~~~~k~~~l----~~ll~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 238 ------SNEEKMRLL----QTLIEEEW--PDRAIIFANTKHRCEEIWGHLAA--DGHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred ------CHHHHHHHH----HHHHHhcC--CCeEEEEECCHHHHHHHHHHHHh--CCCcEEEecCCCChhHHHHHHHHHHc
Confidence 001111222 22222222 46899999999999999999984 46889999999999999999999999
Q ss_pred Cc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 327 ~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
|. +|||||+++++|||+|+|++||+ ||+|.....| .||+|||||. +.|.++.++++++.
T Consensus 304 g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~y----------iqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 304 GDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDY----------VHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhhe----------EeccccccCCCCCeeEEEEeCHHHH
Confidence 98 99999999999999999999999 9999866666 9999999999 68999999998654
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.8e-35 Score=349.10 Aligned_cols=313 Identities=19% Similarity=0.222 Sum_probs=223.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---------C-CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------N-MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---------~-~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
..+++|.++++.+++++++|++||||||||+++..+++.. + ...++|+.|+|.+|.|+.+.+... +...
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~-~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF-GASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH-hccc
Confidence 3679999999999999999999999999996543333221 1 125788889999999888776553 2222
Q ss_pred CCeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 97 GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 97 g~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
+..+....+.. .......+|+|+|||+|++.+..+...+.++++||||||| |+++.+|...+.+.+...+++.
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCC
Confidence 22222221211 1234568999999999999998776667799999999999 8888888887777777778899
Q ss_pred eEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCC--ccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCC
Q 002165 171 RVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTN--QRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (957)
Q Consensus 171 klIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~--~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (957)
|++++|||++.+ .+...+- ...++.+. +.... ........+..+
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~---~~~~v~i~-vg~~~l~~~~~i~q~~~~~---------------------------- 357 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLC---KEEPVHVN-VGSLDLTACHNIKQEVFVV---------------------------- 357 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHh---ccCCEEEE-ECCCccccCCCeeEEEEEE----------------------------
Confidence 999999998643 2333221 11122211 11000 000000000000
Q ss_pred CcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC
Q 002165 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (957)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~ 326 (957)
........+.+++..+.. ..+++||||++++.++.+++.|. ..++.+..+||++++++|..+++.|+.
T Consensus 358 ------~~~~k~~~L~~ll~~~~~----~~~k~LIF~~t~~~a~~l~~~L~--~~g~~~~~ihg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 358 ------EEHEKRGKLKMLLQRIMR----DGDKILIFVETKKGADFLTKELR--LDGWPALCIHGDKKQEERTWVLNEFKT 425 (545)
T ss_pred ------echhHHHHHHHHHHHhcc----cCCeEEEEecChHHHHHHHHHHH--HcCCcEEEEECCCcHHHHHHHHHHHhc
Confidence 001111222233333221 24699999999999999999997 346788999999999999999999999
Q ss_pred Cc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 327 ~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
++ +|||||+++++|||||+|++||+ ||.|...+ +|.||+|||||. ..|.+|.++++++.
T Consensus 426 G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~----------~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 426 GKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIE----------DYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHhcccccCCCCceEEEEECcchH
Confidence 88 99999999999999999999999 99987554 459999999999 68999999997654
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.2e-34 Score=338.32 Aligned_cols=317 Identities=23% Similarity=0.252 Sum_probs=228.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---------CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..+++|.++++++.++++++++||||||||+.+...+++. +..+++++.|++.+|.++++.+.... ...+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~-~~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA-KHTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH-ccCC
Confidence 4678999999999999999999999999997655444432 12478999999999999877654432 2233
Q ss_pred CeeEEeeec------ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 98 GEVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 98 ~~Vgy~v~~------~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
..++...+. ......+.+|+|+|||+|++.+....+.+.++++||||||| +.++..|...+.......+...+
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q 180 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQ 180 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccE
Confidence 334333222 12235578999999999999998887777799999999999 78887776666555555566789
Q ss_pred EEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
+++||||++...+..+...+.. .++.+...+...... .+...| ...
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~--~i~~~~-------------------------------~~~ 226 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLN-DPVEVEAEPSRRERK--KIHQWY-------------------------------YRA 226 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHcc-CCEEEEecCCccccc--CceEEE-------------------------------EEe
Confidence 9999999986655555544321 222222221110000 000000 000
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eE
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kV 330 (957)
+...... .++..+..... .+++||||+++++++.++..|.. .++.+..+||+|++.+|..+++.|++|. +|
T Consensus 227 ~~~~~k~----~~l~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~v 298 (434)
T PRK11192 227 DDLEHKT----ALLCHLLKQPE--VTRSIVFVRTRERVHELAGWLRK--AGINCCYLEGEMVQAKRNEAIKRLTDGRVNV 298 (434)
T ss_pred CCHHHHH----HHHHHHHhcCC--CCeEEEEeCChHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHhCCCCcE
Confidence 0001112 33333333322 46899999999999999999984 5688999999999999999999999999 99
Q ss_pred EEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhh
Q 002165 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (957)
Q Consensus 331 lVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~ 405 (957)
||||+++++|||+|+|++||+ ||.+... ..|+||+|||||. ..|.++.+++..++..
T Consensus 299 LVaTd~~~~GiDip~v~~VI~--------~d~p~s~----------~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVIN--------FDMPRSA----------DTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEccccccCccCCCCCEEEE--------ECCCCCH----------HHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 999999999999999999999 9987644 4559999999998 6799999998766643
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.3e-34 Score=337.19 Aligned_cols=312 Identities=19% Similarity=0.228 Sum_probs=221.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----------CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----------~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
-.+++|.++++.+++++++|++||||||||..+..++++.. ..+++++.|++.+|.++.+.+..... .
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~-~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK-Y 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc-c
Confidence 46799999999999999999999999999976655555331 11578888999999998887765432 2
Q ss_pred cCCeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 96 lg~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
.+..+...++.. .......+|+|+||++|++.+....+.+.++++||||||| +.++.++...+.+.+.....+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~ 180 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAK 180 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCcc
Confidence 222221111111 1234578999999999999988777777799999999999 778877776665555555667
Q ss_pred ceEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 170 lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.+++++|||++.+ .+...+. .....+.+...... .......+.+.+
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~--~~~i~~~~~~~~---------------------------- 228 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTA--SEQVTQHVHFVD---------------------------- 228 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEeccccc--ccceeEEEEEcC----------------------------
Confidence 8999999998753 2332221 11111111110000 000000000000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
..... +++..+..... ..++||||+++.+++.+++.|.. .++.+..+||++++++|..+++.|+++
T Consensus 229 ------~~~k~----~~l~~l~~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~R~~~l~~F~~g 294 (456)
T PRK10590 229 ------KKRKR----ELLSQMIGKGN--WQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSG 294 (456)
T ss_pred ------HHHHH----HHHHHHHHcCC--CCcEEEEcCcHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 00111 22233332222 46899999999999999999974 458899999999999999999999999
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
+ +|||||+++++|||||+|++||+ ||.+.... +|+||+|||||. ..|.++.+++..+..
T Consensus 295 ~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~----------~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 295 DIRVLVATDIAARGLDIEELPHVVN--------YELPNVPE----------DYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred CCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHH----------HhhhhccccccCCCCeeEEEEecHHHHH
Confidence 8 99999999999999999999999 99887554 459999999998 679999999876543
No 24
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-34 Score=342.26 Aligned_cols=315 Identities=27% Similarity=0.326 Sum_probs=234.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----C-c-EEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----E-P-ILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----~-~-Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
--.+++|.++++.++.++++++.|+||||||.++...+++.-. . . .+|+.|+|.+|.|+++.+........+.
T Consensus 50 ~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 50 EEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 3467999999999999999999999999999777777766422 1 2 6788888888999887765532211022
Q ss_pred eeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 99 EVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 99 ~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
.+...++.. ..+..+.+|+|+|||+|++++..+.+.+.++.++|+|||+ |+++.+|...+.+.+...+++.|+
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qt 208 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQT 208 (513)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEE
Confidence 233333322 2234469999999999999999888888899999999999 899999999998888888889999
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCc-cceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
+++|||++. .+..+....-. .++.+ .+..... ...-.+..+|+ ..
T Consensus 209 llfSAT~~~-~i~~l~~~~l~-~p~~i-~v~~~~~~~~~~~i~q~~~-------------------------------~v 254 (513)
T COG0513 209 LLFSATMPD-DIRELARRYLN-DPVEI-EVSVEKLERTLKKIKQFYL-------------------------------EV 254 (513)
T ss_pred EEEecCCCH-HHHHHHHHHcc-CCcEE-EEccccccccccCceEEEE-------------------------------Ee
Confidence 999999987 45555544322 22211 1110000 00000110000 00
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eE
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kV 330 (957)
....... .++..+..... .+++|||++++..++.++..|.. .++.+..+||+|++++|..+++.|++++ +|
T Consensus 255 ~~~~~k~----~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~--~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~v 326 (513)
T COG0513 255 ESEEEKL----ELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRK--RGFKVAALHGDLPQEERDRALEKFKDGELRV 326 (513)
T ss_pred CCHHHHH----HHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHH--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 0000111 33444444333 34799999999999999999984 4589999999999999999999999998 99
Q ss_pred EEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 331 lVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+||||+|++|||||+|.+||+ ||.|...+.| .||+||+||. ..|.++.|+++.
T Consensus 327 LVaTDvaaRGiDi~~v~~Vin--------yD~p~~~e~y----------vHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 327 LVATDVAARGLDIPDVSHVIN--------YDLPLDPEDY----------VHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EEEechhhccCCccccceeEE--------ccCCCCHHHh----------eeccCccccCCCCCeEEEEeCcH
Confidence 999999999999999999999 9999877777 9999999999 789999999863
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.1e-34 Score=340.35 Aligned_cols=312 Identities=18% Similarity=0.246 Sum_probs=216.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc------------CCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------------NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~------------~~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
-.+++|.++++.+..+++++++||||||||..+..+++.. ....++++.|+|.+|.|+.+.+... +.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~ 221 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GK 221 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hC
Confidence 3578999999999999999999999999996555544431 1235777788888888877665442 22
Q ss_pred ccCCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC
Q 002165 95 ELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~ 168 (957)
.++..+...++.+. ....+.+|+|+|||+|++.+....+.+.++++||||||| +.++.+|...+.+.+ ...+
T Consensus 222 ~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~i~-~~l~ 299 (518)
T PLN00206 222 GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQIF-QALS 299 (518)
T ss_pred CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHHHH-HhCC
Confidence 33322222222221 234568999999999999998777777899999999999 777777765554433 3346
Q ss_pred CceEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCCc-cceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 169 DLRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 169 ~lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
+.|++++|||++.+ .+...+.. .++ .+.+..... .........+++
T Consensus 300 ~~q~l~~SATl~~~v~~l~~~~~~----~~~-~i~~~~~~~~~~~v~q~~~~~~-------------------------- 348 (518)
T PLN00206 300 QPQVLLFSATVSPEVEKFASSLAK----DII-LISIGNPNRPNKAVKQLAIWVE-------------------------- 348 (518)
T ss_pred CCcEEEEEeeCCHHHHHHHHHhCC----CCE-EEEeCCCCCCCcceeEEEEecc--------------------------
Confidence 78999999998643 44444431 111 111111100 000000000000
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~ 325 (957)
.......+.+++ .......+++|||++++..++.+++.|.. ..++.+..+||+++.++|..+++.|+
T Consensus 349 --------~~~k~~~l~~~l----~~~~~~~~~~iVFv~s~~~a~~l~~~L~~-~~g~~~~~~Hg~~~~~eR~~il~~Fr 415 (518)
T PLN00206 349 --------TKQKKQKLFDIL----KSKQHFKPPAVVFVSSRLGADLLANAITV-VTGLKALSIHGEKSMKERREVMKSFL 415 (518)
T ss_pred --------chhHHHHHHHHH----HhhcccCCCEEEEcCCchhHHHHHHHHhh-ccCcceEEeeCCCCHHHHHHHHHHHH
Confidence 000011111222 11112235899999999999999998863 23578999999999999999999999
Q ss_pred CCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 326 ~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
.|+ +|||||+++++|||+|+|++||+ ||+|... .+|+||+|||||. ..|.++.++++++.
T Consensus 416 ~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~----------~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 416 VGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTI----------KEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCH----------HHHHHhccccccCCCCeEEEEEEchhHH
Confidence 998 99999999999999999999999 9988744 5559999999999 57999999987654
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.2e-34 Score=342.39 Aligned_cols=312 Identities=20% Similarity=0.246 Sum_probs=224.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
-..+++|.++++.+++++++|++||||||||.++..++++.. ...++|+.|++.+|.|+++.+....+...+..+
T Consensus 27 ~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 357899999999999999999999999999987776665431 236888899999999998887665433223333
Q ss_pred EEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 101 gy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
....+.. ......++|+|+||+.|++.+..+.+.+.++++||||||| .+++..|...+...+.......++++
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-~ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-EMLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-HHhhcccHHHHHHHHHhCCCCCeEEE
Confidence 3322221 1234578999999999999998887777899999999999 46677777666666656677889999
Q ss_pred ecccCChHH--HH-HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 175 MSATADITK--YR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 175 mSATld~~~--~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
||||++... +. .|+. . +..+ .+...... ...+...| ...
T Consensus 186 fSAT~p~~i~~i~~~~l~---~--~~~i-~i~~~~~~-~~~i~q~~-----------------------~~v-------- 227 (629)
T PRK11634 186 FSATMPEAIRRITRRFMK---E--PQEV-RIQSSVTT-RPDISQSY-----------------------WTV-------- 227 (629)
T ss_pred EEccCChhHHHHHHHHcC---C--CeEE-EccCcccc-CCceEEEE-----------------------EEe--------
Confidence 999986432 22 2222 1 1111 11111000 00000000 000
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eE
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kV 330 (957)
. .....+. +..+..... ...+||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|+.++ +|
T Consensus 228 ~-~~~k~~~----L~~~L~~~~--~~~~IVF~~tk~~a~~l~~~L~~--~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~I 298 (629)
T PRK11634 228 W-GMRKNEA----LVRFLEAED--FDAAIIFVRTKNATLEVAEALER--NGYNSAALNGDMNQALREQTLERLKDGRLDI 298 (629)
T ss_pred c-hhhHHHH----HHHHHHhcC--CCCEEEEeccHHHHHHHHHHHHh--CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCE
Confidence 0 0001111 112222222 35899999999999999999984 4688999999999999999999999998 99
Q ss_pred EEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 331 lVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
||||+++++|||+|+|++||+ ||.|...+ +|.||+|||||. +.|.++.++++.+.
T Consensus 299 LVATdv~arGIDip~V~~VI~--------~d~P~~~e----------~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 299 LIATDVAARGLDVERISLVVN--------YDIPMDSE----------SYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEEcchHhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999 99887555 459999999999 57999999987543
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.2e-34 Score=338.42 Aligned_cols=313 Identities=17% Similarity=0.224 Sum_probs=218.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC------------CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~------------~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
-.+++|.++|+.+++++++|++||||||||..+..++++.. ..+++++.|++.++.++++.+.. ++.
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK-FGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH-Hhc
Confidence 36899999999999999999999999999976666554421 13688888999999999887644 333
Q ss_pred ccCCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 95 ELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
..+..++...+... ....+.+|+|+||++|++.+... .+.+..+++||||||| +.++.+|...+...+....
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp 188 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMP 188 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhcc
Confidence 44555554443321 23456799999999999988754 3456689999999999 5666666654433332222
Q ss_pred --CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 168 --NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 168 --~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
.+.|+++||||++..........+... ..+...............+++
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~v~~~~~~~~~i~q~~~~---------------------------- 238 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEP--EKLVVETETITAARVRQRIYF---------------------------- 238 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCC--cEEEeccccccccceeEEEEe----------------------------
Confidence 267999999999765443332222211 111110000000000000000
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~ 325 (957)
........ .+..+..... +.++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|+
T Consensus 239 ------~~~~~k~~----~L~~ll~~~~--~~k~LVF~nt~~~ae~l~~~L~~--~g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 239 ------PADEEKQT----LLLGLLSRSE--GARTMVFVNTKAFVERVARTLER--HGYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred ------cCHHHHHH----HHHHHHhccc--CCcEEEEeCCHHHHHHHHHHHHH--cCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 00001111 1222222222 46899999999999999999984 4588999999999999999999999
Q ss_pred CCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 326 ~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
++. +|||||+++++|||||+|++||+ ||.+... .+|+||+|||||. ..|.++.|+++.+.
T Consensus 305 ~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s~----------~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 305 KGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFDA----------EDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred cCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCCH----------HHHhhhhcccccCCCCceEEEEecHHHH
Confidence 988 99999999999999999999999 9887644 4559999999998 67999999987543
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.4e-33 Score=323.23 Aligned_cols=315 Identities=19% Similarity=0.224 Sum_probs=218.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++++.+.++++++++||||||||..+...+++. ...+++++.|++.++.|+.+.+... +...+..++.
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~-~~~~~~~~~~ 129 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLAL-GDYLKVRCHA 129 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHH-hhhcCceEEE
Confidence 578999999999999999999999999997766655543 2236888889998888887765443 2223322222
Q ss_pred eeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.. .....+.+|+|+||+.|.+.+..+.+.+.++++||||||| +..+.++...+.+.+....++.|+|++|
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 22211 1224457999999999999988776667799999999999 5555555544555555556789999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++.+........... +..+. ++.... ..-.+..+| .. ......
T Consensus 209 AT~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~-----------------------~~--------~~~~~~ 253 (401)
T PTZ00424 209 ATMPNEILELTTKFMRD--PKRIL-VKKDEL-TLEGIRQFY-----------------------VA--------VEKEEW 253 (401)
T ss_pred ecCCHHHHHHHHHHcCC--CEEEE-eCCCCc-ccCCceEEE-----------------------Ee--------cChHHH
Confidence 99875432211111111 11111 111000 000000000 00 000000
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
.. ..+..+..... ..++||||++++.++.+++.|.. .++.+..+||+++.++|..+++.|+.|+ +|||||+
T Consensus 254 ~~----~~l~~~~~~~~--~~~~ivF~~t~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 254 KF----DTLCDLYETLT--ITQAIIYCNTRRKVDYLTKKMHE--RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HH----HHHHHHHHhcC--CCeEEEEecCcHHHHHHHHHHHH--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 11 12222222222 35899999999999999999974 4678999999999999999999999998 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~ 405 (957)
++++|||+|++++||+ ||++. |..+|.||+|||||. ..|.|+.++++++...
T Consensus 326 ~l~~GiDip~v~~VI~--------~~~p~----------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 326 LLARGIDVQQVSLVIN--------YDLPA----------SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred cccCCcCcccCCEEEE--------ECCCC----------CHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999999999999 88776 445569999999998 6899999999876543
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-33 Score=325.89 Aligned_cols=308 Identities=19% Similarity=0.218 Sum_probs=213.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C--------CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N--------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~--------~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
.+++|.++++.+.+++++|+++|||||||+.+...+++. . ..+++++.|++.+|.++.+.+.... ..
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~-~~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT-KY 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh-cc
Confidence 478999999999999999999999999996655555432 1 2367888899999999888765532 22
Q ss_pred cCCeeEEeeeccc-------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc--
Q 002165 96 LGGEVGYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (957)
Q Consensus 96 lg~~Vgy~v~~~~-------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-- 166 (957)
.|..+.-.++..+ .....++|+|+||++|+..+......+.++++|||||+| +.++..+...+.+.+...
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~ 267 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQVRQIIRQTPR 267 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHHHHHHHHhCCC
Confidence 3333332222211 123468999999999999887766667799999999999 566666654443333222
Q ss_pred CCCceEEEecccCChHH--HHHHHhhcCCCceeEEEEecCCCc-cceeeeeeehHHHHHHHhccCCCCccccccccccCC
Q 002165 167 KNDLRVVLMSATADITK--YRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (957)
Q Consensus 167 ~~~lklIlmSATld~~~--~~~~f~~~~~~~~v~v~~~~~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (957)
..+.++|++|||++.+. +...+. .. +..+ .+..... .......++
T Consensus 268 ~~~~q~i~~SAT~~~~~~~~~~~~~--~~--~~~v-~~~~~~~~~~~~~~~~~--------------------------- 315 (475)
T PRK01297 268 KEERQTLLFSATFTDDVMNLAKQWT--TD--PAIV-EIEPENVASDTVEQHVY--------------------------- 315 (475)
T ss_pred CCCceEEEEEeecCHHHHHHHHHhc--cC--CEEE-EeccCcCCCCcccEEEE---------------------------
Confidence 23579999999986432 222221 11 1111 1111000 000000000
Q ss_pred CCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhc
Q 002165 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (957)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~ 323 (957)
.....+...++.++ ..... .+++||||+++++++.+++.|.. .++.+..+||+++.++|..+++.
T Consensus 316 -------~~~~~~k~~~l~~l----l~~~~--~~~~IVF~~s~~~~~~l~~~L~~--~~~~~~~~~g~~~~~~R~~~~~~ 380 (475)
T PRK01297 316 -------AVAGSDKYKLLYNL----VTQNP--WERVMVFANRKDEVRRIEERLVK--DGINAAQLSGDVPQHKRIKTLEG 380 (475)
T ss_pred -------EecchhHHHHHHHH----HHhcC--CCeEEEEeCCHHHHHHHHHHHHH--cCCCEEEEECCCCHHHHHHHHHH
Confidence 00001112222222 22222 35899999999999999999974 45788999999999999999999
Q ss_pred ccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 324 f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
|+.|+ +||||||++++|||||++++||+ ||.+. |.++|+||+|||||. ..|.++.+++++
T Consensus 381 Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 381 FREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE----------DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred HhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC----------CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99988 99999999999999999999999 88776 556669999999999 679999999876
Q ss_pred h
Q 002165 402 F 402 (957)
Q Consensus 402 ~ 402 (957)
+
T Consensus 443 d 443 (475)
T PRK01297 443 D 443 (475)
T ss_pred H
Confidence 4
No 30
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=303.65 Aligned_cols=331 Identities=20% Similarity=0.269 Sum_probs=226.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------CcEEEeccHHHHHHHHH---HHHHhh-c
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----------EPILCTQPRRFAVVAVA---KMVAKG-R 92 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----------~~Iivt~Prrlaa~~va---~rva~e-~ 92 (957)
.+|+|...++.++++++|++.++||||||.++..++++.-. +.+|++|+|+++ .|+. .-+... .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa-~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELA-RQIREVAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHH-HHHHHHHHHHHHhhh
Confidence 78999999999999999999999999999888777776421 245666555554 4443 333332 1
Q ss_pred CCccCCeeEEe-eecc--cccCCCCcEEEEcHHHHHHHHHcc--CCCcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 93 NCELGGEVGYH-IGHS--KHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 93 ~~~lg~~Vgy~-v~~~--~~~~~~t~Ivv~T~g~Ll~~l~~~--~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
+...--.||-. ++.+ ....+++.|+|+|||+|++.++.. .+++..++++|+|||| |.++..|-..+-..+...+
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LP 186 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLP 186 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhcc
Confidence 11111223321 1111 112467899999999999999874 3444489999999999 9999999988887777778
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
...+.-++|||.+.+ ..+.+. .|-..++.|.--........-....+|+
T Consensus 187 KQRRTGLFSATq~~~-v~dL~r-aGLRNpv~V~V~~k~~~~tPS~L~~~Y~----------------------------- 235 (567)
T KOG0345|consen 187 KQRRTGLFSATQTQE-VEDLAR-AGLRNPVRVSVKEKSKSATPSSLALEYL----------------------------- 235 (567)
T ss_pred cccccccccchhhHH-HHHHHH-hhccCceeeeecccccccCchhhcceee-----------------------------
Confidence 888999999997533 223222 1222333321111000000000111111
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
....... . ..+.++..+.. .+++|||.+|-..++.....+........+..+||.|.+.+|..++..|+..
T Consensus 236 --v~~a~eK-~----~~lv~~L~~~~--~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~ 306 (567)
T KOG0345|consen 236 --VCEADEK-L----SQLVHLLNNNK--DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL 306 (567)
T ss_pred --EecHHHH-H----HHHHHHHhccc--cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc
Confidence 0000011 1 12222322322 4699999999999999988887766778999999999999999999999875
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech--hhh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK--SFF 403 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~--~~~ 403 (957)
. .|++|||+|++|||||+|++||. ||||...+++ .||+||+||. +.|.++.+..+ ..|
T Consensus 307 ~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~F----------vHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 307 SNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSF----------VHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred cCceEEeehhhhccCCCCCceEEEe--------cCCCCChhHH----------HhhcchhhhccCccceEEEecccHHHH
Confidence 5 99999999999999999999999 9999988776 9999999999 67887777654 445
Q ss_pred hh-ccCCCCCchhcCC
Q 002165 404 GT-LEDHECPAILRLS 418 (957)
Q Consensus 404 ~~-l~~~~~PEI~r~~ 418 (957)
-. |.-...|++-+..
T Consensus 369 veFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 369 VEFLRIKGKVELERID 384 (567)
T ss_pred HHHHHhcCccchhhhc
Confidence 43 4555567765543
No 31
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=304.08 Aligned_cols=307 Identities=23% Similarity=0.312 Sum_probs=224.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc--------------CCCcEEEeccHHHHHHHHHHH---HHh
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------------NMEPILCTQPRRFAVVAVAKM---VAK 90 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~--------------~~~~Iivt~Prrlaa~~va~r---va~ 90 (957)
.+++|..+++..+.++++|..|+||||||..++..|+.. ....-++..|+|.+|+++... ++.
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~ 347 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGK 347 (673)
T ss_pred CchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999996655554421 012456777888888877553 333
Q ss_pred hcCCccCCeeEEeeeccc--ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC
Q 002165 91 GRNCELGGEVGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (957)
Q Consensus 91 e~~~~lg~~Vgy~v~~~~--~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~ 168 (957)
-+|..+-..||..-..+. +++.++.|+++|||.|++.+-+..+-+.+..+||+|||+ |+++.+|-..+.+.+-....
T Consensus 348 ~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 348 PLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPS 426 (673)
T ss_pred cccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCc
Confidence 333333344554422233 467899999999999999998877777799999999999 89999998888777754321
Q ss_pred -------------------------CceEEEecccCChH---HHHHHHhhcCCCceeEEEEec--CCCccceeeeeeehH
Q 002165 169 -------------------------DLRVVLMSATADIT---KYRDYFRDLGRGERVEVLAIP--STNQRTIFQRRVSYL 218 (957)
Q Consensus 169 -------------------------~lklIlmSATld~~---~~~~~f~~~~~~~~v~v~~~~--~~~~~~~~~v~v~yl 218 (957)
-.+.+.+|||+.+. ....||.. ++ ++++. +.+..+. ...++++
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-----pv-~vtig~~gk~~~rv-eQ~v~m~ 499 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-----PV-VVTIGSAGKPTPRV-EQKVEMV 499 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-----Ce-EEEeccCCCCccch-heEEEEe
Confidence 14789999998643 34456653 22 22222 2122111 1112111
Q ss_pred HHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC
Q 002165 219 EQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP 298 (957)
Q Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~ 298 (957)
. .... .. +++ .|..... ..+|+||+|+++.++.+++.|.+
T Consensus 500 ~---------------------------------ed~k-~k---kL~-eil~~~~--~ppiIIFvN~kk~~d~lAk~LeK 539 (673)
T KOG0333|consen 500 S---------------------------------EDEK-RK---KLI-EILESNF--DPPIIIFVNTKKGADALAKILEK 539 (673)
T ss_pred c---------------------------------chHH-HH---HHH-HHHHhCC--CCCEEEEEechhhHHHHHHHHhh
Confidence 1 0011 11 222 2222222 35899999999999999999985
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHH
Q 002165 299 LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 377 (957)
Q Consensus 299 ~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 377 (957)
.++.+..|||+-++++|..++..|+.+. .|+||||+|++|||||+|.+||+ ||....++.|
T Consensus 540 --~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDY-------- 601 (673)
T KOG0333|consen 540 --AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDY-------- 601 (673)
T ss_pred --ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHH--------
Confidence 4599999999999999999999999988 99999999999999999999999 9999877766
Q ss_pred hHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 378 QAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 378 s~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
.||+||+||. ..|.++.++++++
T Consensus 602 --tHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 602 --THRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred --HHHhccccccccCceeEEEeccch
Confidence 9999999999 6799999999876
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=300.91 Aligned_cols=318 Identities=20% Similarity=0.257 Sum_probs=232.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CC-----CcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM-----EPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~-----~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
.-++++|+..++.++.++++++.|.||||||.++.....|. .. -.++|+.|+|.+|+|.+....+.+...-
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 34789999999999999999999999999995554444332 11 1577888888888888777666554333
Q ss_pred CCeeEEeeecccc------cCCCCcEEEEcHHHHHHHHHccC-CCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 97 GGEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 97 g~~Vgy~v~~~~~------~~~~t~Ivv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
+..||+.|+..+. ......|+|+|||+|++.+++.. +...+..++|+|||| |.++..|-..+.+.+-..+..
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQ 261 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhcccc
Confidence 6678888776543 34589999999999999999653 333477899999999 999999999998888777888
Q ss_pred ceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 002165 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (957)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (957)
.|..++|||.+.+ ..+.....-..+++-+......... +.+-+...|...+.
T Consensus 262 rqt~LFSAT~~~k-V~~l~~~~L~~d~~~v~~~d~~~~~-----------------------The~l~Qgyvv~~~---- 313 (543)
T KOG0342|consen 262 RQTLLFSATQPSK-VKDLARGALKRDPVFVNVDDGGERE-----------------------THERLEQGYVVAPS---- 313 (543)
T ss_pred ceeeEeeCCCcHH-HHHHHHHhhcCCceEeecCCCCCcc-----------------------hhhcccceEEeccc----
Confidence 9999999998754 4444443222233332222221110 01111111211111
Q ss_pred cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-
Q 002165 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (957)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r- 328 (957)
... ..++..++ .++.. ..+|+||++|...+...++.|. ..++.|.-+||+.++..|..++..|+...
T Consensus 314 ----~~~-f~ll~~~L---Kk~~~--~~KiiVF~sT~~~vk~~~~lL~--~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 314 ----DSR-FSLLYTFL---KKNIK--RYKIIVFFSTCMSVKFHAELLN--YIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred ----cch-HHHHHHHH---HHhcC--CceEEEEechhhHHHHHHHHHh--hcCCchhhhhcCCcccccchHHHHHhhccc
Confidence 111 11111222 22222 2699999999999999999998 44588999999999999999999998776
Q ss_pred eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 329 kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
-|+||||++++|+|+|+|++||. ||+|...+.| +||.||+||. +.|..+.+..+.+
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~Y----------IHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQY----------IHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ceEEecchhhccCCCCCceEEEE--------eCCCCCHHHH----------HHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999999999 9999977655 9999999998 6799998887654
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-31 Score=314.93 Aligned_cols=308 Identities=17% Similarity=0.178 Sum_probs=205.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecc
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS 107 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~ 107 (957)
.+++|.++++++++++++++++|||||||..+..+.+..+ +..+|+.|.+.++.+...++.. .|.. +.+.....
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-~~~lVi~P~~~L~~dq~~~l~~-~gi~----~~~l~~~~ 85 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-GITLVISPLISLMEDQVLQLKA-SGIP----ATFLNSSQ 85 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-CcEEEEecHHHHHHHHHHHHHH-cCCc----EEEEeCCC
Confidence 5789999999999999999999999999954333333333 3455666777766666666643 3332 22221111
Q ss_pred ----------cccCCCCcEEEEcHHHHHHHH-HccCC-CcCcceEEEEccccccccc-ccHHHHH--HHHHHhcCCCceE
Q 002165 108 ----------KHLSERSKIVFKTAGVLLDEM-RDRGL-NALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRV 172 (957)
Q Consensus 108 ----------~~~~~~t~Ivv~T~g~Ll~~l-~~~~l-~l~~~~~VIIDEaHER~~~-~d~ll~~--lk~l~~~~~~lkl 172 (957)
.......+|+|+||+.+.... ....+ ...++++|||||||..+-. .+|...+ +..+....++.++
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 165 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPI 165 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCce
Confidence 112346899999999975422 10111 2348999999999943221 2344332 3334455688999
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (957)
+++|||++.....+....++...+. +...........+.+. .
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~-~~~~s~~r~nl~~~v~-------------------------------------~ 207 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQ-IFCTSFDRPNLYYEVR-------------------------------------R 207 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCc-EEeCCCCCCCcEEEEE-------------------------------------e
Confidence 9999999877666655543322211 1111100000000000 0
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEE
Q 002165 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (957)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVl 331 (957)
.... .+.+++..+....+ +..+||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.++ +||
T Consensus 208 ~~~~---~~~~l~~~l~~~~~--~~~~IIF~~s~~~~e~la~~L~~--~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vL 280 (470)
T TIGR00614 208 KTPK---ILEDLLRFIRKEFK--GKSGIIYCPSRKKSEQVTASLQN--LGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280 (470)
T ss_pred CCcc---HHHHHHHHHHHhcC--CCceEEEECcHHHHHHHHHHHHh--cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 0000 11122323322222 34679999999999999999984 4688999999999999999999999998 999
Q ss_pred EEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 332 VaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
|||+++++|||+|+|++||+ ||+|... .+|.||+|||||. .+|.|+.+|+..+..
T Consensus 281 VaT~~~~~GID~p~V~~VI~--------~~~P~s~----------~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 281 VATVAFGMGINKPDVRFVIH--------YSLPKSM----------ESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred EEechhhccCCcccceEEEE--------eCCCCCH----------HHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 99999999999999999999 8888744 5569999999999 689999999987654
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=302.83 Aligned_cols=318 Identities=24% Similarity=0.308 Sum_probs=232.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC--------CcEEEeccHHHHHHHH---HHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--------EPILCTQPRRFAVVAV---AKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~--------~~Iivt~Prrlaa~~v---a~rva~e~~~~ 95 (957)
-.+|+|...|+..+-+++++.+|.||||||.++..+++|... .+|+|..|+|.+|+|+ .+.+++.....
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~ 282 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDIT 282 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccce
Confidence 357899999999999999999999999999988888887632 2688888888887765 55666666655
Q ss_pred cCCeeEEe-ee-cccccCCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 96 LGGEVGYH-IG-HSKHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 96 lg~~Vgy~-v~-~~~~~~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
+|-.||.. ++ ++..+...++|+|+|||+|.+.+.+. .+.+.++.++|+|||+ |+++..|...+-..+.....+.|.
T Consensus 283 ~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQT 361 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQT 361 (691)
T ss_pred eeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccc
Confidence 55444421 21 23445778999999999999999864 5667799999999999 999999988877666666778899
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (957)
+++||||..+ +.++... .-..|+.++.-|...... .| ..+.+..+ +. .+..
T Consensus 362 mLFSATMtee-VkdL~sl-SL~kPvrifvd~~~~~a~-------~L-------------tQEFiRIR----~~---re~d 412 (691)
T KOG0338|consen 362 MLFSATMTEE-VKDLASL-SLNKPVRIFVDPNKDTAP-------KL-------------TQEFIRIR----PK---REGD 412 (691)
T ss_pred eeehhhhHHH-HHHHHHh-hcCCCeEEEeCCccccch-------hh-------------hHHHheec----cc---cccc
Confidence 9999999633 3333321 223455554433321100 00 00000000 00 0001
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEE
Q 002165 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (957)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVl 331 (957)
-..-+..++.++. ...++||+.+++.+..+.-+|. ..++.+.-+||+|++++|...++.|+... .||
T Consensus 413 Rea~l~~l~~rtf----------~~~~ivFv~tKk~AHRl~IllG--Llgl~agElHGsLtQ~QRlesL~kFk~~eidvL 480 (691)
T KOG0338|consen 413 REAMLASLITRTF----------QDRTIVFVRTKKQAHRLRILLG--LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVL 480 (691)
T ss_pred cHHHHHHHHHHhc----------ccceEEEEehHHHHHHHHHHHH--HhhchhhhhcccccHHHHHHHHHHHHhccCCEE
Confidence 1111122222221 2489999999999999988886 34588999999999999999999999998 999
Q ss_pred EEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 332 VaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||||+|++|+||++|..||| |+.|...+.| +||+||+.|. +.|..+.|..+++-.
T Consensus 481 iaTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y----------~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 481 IATDVASRGLDIEGVQTVIN--------YAMPKTIEHY----------LHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred EEechhhccCCccceeEEEe--------ccCchhHHHH----------HHHhhhhhhcccCcceEEEeccccHH
Confidence 99999999999999999999 9988866655 9999999999 689999999987543
No 35
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=324.90 Aligned_cols=428 Identities=18% Similarity=0.195 Sum_probs=274.4
Q ss_pred CchHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 27 PVMSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~l-~~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
-+++.|++++... .+++|++|++|||||||...-..++.. +..+++++.|.+.+|.+.++.+.. -..+|..|+-
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~--~~~~GirV~~ 108 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSR--LEELGIRVGI 108 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhh--HHhcCCEEEE
Confidence 3566677777765 466999999999999996666665543 235899999999999999998881 1234444554
Q ss_pred eeeccc---ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccc--cccHHHHHHHHHHhcCCCceEEEecc
Q 002165 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV--ESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 103 ~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~--~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
..+..+ ..-.+++|+|+||+.+-..+++......++++|||||+|--.- ..-.+..++.++....+..|+|++||
T Consensus 109 ~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSA 188 (766)
T COG1204 109 STGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSA 188 (766)
T ss_pred ecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEee
Confidence 443333 2246899999999999998887766566999999999993111 11245666677766677799999999
Q ss_pred cC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
|+ |.+.+++|.+.- .+.....|..-....+....++.. ..... .....
T Consensus 189 TlpN~~evA~wL~a~----~~~~~~rp~~l~~~v~~~~~~~~~----------------------~~~~k-----~~~~~ 237 (766)
T COG1204 189 TLPNAEEVADWLNAK----LVESDWRPVPLRRGVPYVGAFLGA----------------------DGKKK-----TWPLL 237 (766)
T ss_pred ecCCHHHHHHHhCCc----ccccCCCCcccccCCccceEEEEe----------------------cCccc-----ccccc
Confidence 96 999999999752 111111111100000000000000 00000 00011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC--------------------CCC---------------
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------------------LSS--------------- 301 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------------------~~~--------------- 301 (957)
..+.+..++..... .++++|||++++..+...++.|.. ...
T Consensus 238 ~~~~~~~~v~~~~~----~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v 313 (766)
T COG1204 238 IDNLALELVLESLA----EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313 (766)
T ss_pred chHHHHHHHHHHHh----cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH
Confidence 11122222222221 257999999999998888877751 000
Q ss_pred CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHH
Q 002165 302 FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (957)
Q Consensus 302 ~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~ 380 (957)
...+..||+||+.++|..+++.|+.|. +||+||++++.|+|+|.-++||- -..+||+..+ .+.|+..++.
T Consensus 314 ~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~dv~ 384 (766)
T COG1204 314 LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLDVL 384 (766)
T ss_pred HhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhhHh
Confidence 124778999999999999999999999 99999999999999999999984 2344776222 5678999999
Q ss_pred HhcCCCCCCC---CCeEEEee-chh---hhhhccCCCCCchhcCCHHHHH-HHHhhhhcccCCCh------hHhhhcccC
Q 002165 381 QRRGRTGRTC---DGQVYRLV-TKS---FFGTLEDHECPAILRLSLRLQV-LLICCAESKAISDP------KVLLQKALD 446 (957)
Q Consensus 381 QR~GRAGR~~---~G~~~~L~-s~~---~~~~l~~~~~PEI~r~~L~~~i-L~l~~~~~~~l~~~------~~~l~~~l~ 446 (957)
|++|||||.+ -|..+.+. +.. .+........||...+.|..-. +...+......++. ..|+..+.-
T Consensus 385 QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~ 464 (766)
T COG1204 385 QMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFY 464 (766)
T ss_pred hccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHh
Confidence 9999999993 46666555 222 2234555666665322221111 11111111112211 112111111
Q ss_pred CC-------CHHHHHHHHHHHHHcC-ccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcc
Q 002165 447 PP-------YPEVVGDALDLLDHKR-ALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (957)
Q Consensus 447 pP-------~~~~i~~al~~L~~lg-al~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~ 502 (957)
-| ....+..++..|.+.+ .++.. .+.+..|++|+.++++.++|..++.+.....
T Consensus 465 ~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 465 NPQTYGEGMLREEILASLRYLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred hhhhccccchHHHHHHHHHHHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 12 3467889999999987 66652 2457799999999999999999998876543
No 36
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=281.57 Aligned_cols=316 Identities=22% Similarity=0.262 Sum_probs=226.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC-----cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~-----~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|..++++|++|+++|-+|.||||||+.+...+++.... --++..|+|.+|.++++++.. +|..++..+..
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~v 108 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSV 108 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEE
Confidence 578999999999999999999999999999999998875432 245556667778888887644 44455544444
Q ss_pred eeecc------cccCCCCcEEEEcHHHHHHHHHcc----CCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 103 ~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~----~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
.+++. ..+..+.+++++|||+|...+.++ ...+.++.++|+|||+ |.++.+|-..+--.....+...+.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQt 187 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQT 187 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccce
Confidence 44443 345788999999999999888754 1223489999999999 999988866554444444555699
Q ss_pred EEecccCChHHHHHHHhhcCCC-ceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 173 VLMSATADITKYRDYFRDLGRG-ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~-~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
+++|||++ +.+...++..... ...++..+++.. ..+.+...|...+
T Consensus 188 LlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~vs-------------------------tvetL~q~yI~~~------- 234 (442)
T KOG0340|consen 188 LLFSATIT-DTIKQLFGCPITKSIAFELEVIDGVS-------------------------TVETLYQGYILVS------- 234 (442)
T ss_pred EEEEeehh-hHHHHhhcCCcccccceEEeccCCCC-------------------------chhhhhhheeecc-------
Confidence 99999986 4455555431110 111111111110 0000111111111
Q ss_pred cCChhHHH-HHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-e
Q 002165 252 EIKPEVHK-LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (957)
Q Consensus 252 ~~~~~~~~-li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-k 329 (957)
..+.+ .+.+++...... ..+.++||+++..+++.++..|.. -++.+..+||.|++.+|...+..|+.+. +
T Consensus 235 ---~~vkdaYLv~~Lr~~~~~---~~~simIFvnttr~cQ~l~~~l~~--le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 235 ---IDVKDAYLVHLLRDFENK---ENGSIMIFVNTTRECQLLSMTLKN--LEVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred ---hhhhHHHHHHHHhhhhhc---cCceEEEEeehhHHHHHHHHHHhh--hceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 01111 111222222211 357999999999999999999984 4589999999999999999999999988 9
Q ss_pred EEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 330 VlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||||||+|++|+|||.|..||| ||.|+....| +||.||+.|. +.|..+.++++.+.+
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~y----------iHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVN--------HDIPRDPKDY----------IHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred EEEEechhhcCCCCCceeEEEe--------cCCCCCHHHH----------HHhhcchhcccCCcceEEEechhhHH
Confidence 9999999999999999999999 9999988777 9999999998 679999999975543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.98 E-value=5.7e-31 Score=319.39 Aligned_cols=305 Identities=18% Similarity=0.190 Sum_probs=202.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHH--HHHHHHHhcCCCcEEEeccHHHHHH-HHHHHHHhhcCCccCCeeEEee
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVV-AVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt--~lp~~lle~~~~~Iivt~Prrlaa~-~va~rva~e~~~~lg~~Vgy~v 104 (957)
.++.|.++|++++.++++++++|||+|||. |+|.++ .+ +..+|+.|.+.++. ++.+... .| ..+.+..
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~--~~-GiTLVISPLiSLmqDQV~~L~~--~G----I~Aa~L~ 531 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI--CP-GITLVISPLVSLIQDQIMNLLQ--AN----IPAASLS 531 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH--cC-CcEEEEeCHHHHHHHHHHHHHh--CC----CeEEEEE
Confidence 568899999999999999999999999994 555543 33 34555555555554 5444332 22 2222221
Q ss_pred ecc----------cc--cCCCCcEEEEcHHHHHH--HHHcc--CCC-cCcceEEEEccccccccc-ccHHHHHH--HHHH
Q 002165 105 GHS----------KH--LSERSKIVFKTAGVLLD--EMRDR--GLN-ALKYKVIILDEVHERSVE-SDLVLVCV--KQLL 164 (957)
Q Consensus 105 ~~~----------~~--~~~~t~Ivv~T~g~Ll~--~l~~~--~l~-l~~~~~VIIDEaHER~~~-~d~ll~~l--k~l~ 164 (957)
... .. .....+|+|+|||+|.. .+... .+. ...+++|||||||..+-. .||...+. ..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 110 00 12568999999999852 11111 111 125899999999953322 25655443 3344
Q ss_pred hcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCC
Q 002165 165 LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (957)
Q Consensus 165 ~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (957)
...++.+++++|||++.....+....++...+. ++..........|.+. +
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~-vfr~Sf~RpNL~y~Vv-----------------------------~ 661 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVNCV-VFRQSFNRPNLWYSVV-----------------------------P 661 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcE-EeecccCccceEEEEe-----------------------------c
Confidence 556788999999999877665555544322221 1111100000011000 0
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcc
Q 002165 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (957)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f 324 (957)
..... +..+...+..... .+..||||.++.+++.++..|.. .++.+.++||+|++++|..+++.|
T Consensus 662 --------k~kk~---le~L~~~I~~~~~--~esgIIYC~SRke~E~LAe~L~~--~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 662 --------KTKKC---LEDIDKFIKENHF--DECGIIYCLSRMDCEKVAERLQE--FGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred --------cchhH---HHHHHHHHHhccc--CCCceeEeCchhHHHHHHHHHHH--CCCCeeeeeCCCCHHHHHHHHHHH
Confidence 00001 1122222222221 34789999999999999999984 568899999999999999999999
Q ss_pred cCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 325 ~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
..++ +|||||+++++|||+|+|++||+ ||.|..++.| +||+|||||. .+|.|+.+|+..+
T Consensus 727 ~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsY----------yQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 727 SKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGY----------HQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred hcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCHHHH----------HhhhcccCCCCCCceEEEEecHHH
Confidence 9998 99999999999999999999999 9998866655 9999999999 6899999999876
Q ss_pred hh
Q 002165 403 FG 404 (957)
Q Consensus 403 ~~ 404 (957)
+.
T Consensus 789 ~~ 790 (1195)
T PLN03137 789 YI 790 (1195)
T ss_pred HH
Confidence 64
No 38
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.98 E-value=1e-31 Score=295.76 Aligned_cols=316 Identities=19% Similarity=0.250 Sum_probs=224.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----------CCCcEEEeccHHHHHHHHHH---HHHhhc
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAK---MVAKGR 92 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----------~~~~Iivt~Prrlaa~~va~---rva~e~ 92 (957)
.-++.+|.+.|+..+.|++|+-.|-||||||.++..+++|. |.+.+||+|+|++| .|+.. ++....
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA-~QtFevL~kvgk~h 168 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELA-LQTFEVLNKVGKHH 168 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHH-HHHHHHHHHHhhcc
Confidence 34668999999999999999999999999997776666654 22356666555554 44443 444433
Q ss_pred CCccCCeeEEe-eecccccCCCCcEEEEcHHHHHHHHHccC-CCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 93 NCELGGEVGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 93 ~~~lg~~Vgy~-v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
+...|-.+|.. +.++...-...+|+|||||+||+.|...+ +...++.++|+|||+ |.+++.|--.+-..+-..++..
T Consensus 169 ~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~R 247 (758)
T KOG0343|consen 169 DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKR 247 (758)
T ss_pred ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhh
Confidence 33333333321 22333334578999999999999998653 444599999999999 9999999877777777778888
Q ss_pred eEEEecccCC--hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCc
Q 002165 171 RVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (957)
Q Consensus 171 klIlmSATld--~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (957)
|.+++|||-. ...+++.- +..+.-+.+..-... .+ +..+...|
T Consensus 248 QTLLFSATqt~svkdLaRLs--L~dP~~vsvhe~a~~----at---------------------P~~L~Q~y-------- 292 (758)
T KOG0343|consen 248 QTLLFSATQTKSVKDLARLS--LKDPVYVSVHENAVA----AT---------------------PSNLQQSY-------- 292 (758)
T ss_pred eeeeeecccchhHHHHHHhh--cCCCcEEEEeccccc----cC---------------------hhhhhheE--------
Confidence 9999999963 33444332 112222221100000 00 00000001
Q ss_pred ccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc
Q 002165 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (957)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r 328 (957)
..... .+.+ +.+..+..... ..++|||+.+..++..+++.+.++.+++.+..|||.|.+..|..++..|-..+
T Consensus 293 ~~v~l----~~Ki-~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 293 VIVPL----EDKI-DMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred EEEeh----hhHH-HHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 00111 1111 22222333333 35899999999999999999999999999999999999999999999998777
Q ss_pred -eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 329 -kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
-|++||+++++|+|+|.|++||. ||.|..+++| +||+||+.|. ..|.++.+.++++.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tY----------IHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTY----------IHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEE--------ecCchhHHHH----------HHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999999 9999988877 9999999999 67999999887653
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.98 E-value=1.1e-30 Score=315.03 Aligned_cols=305 Identities=19% Similarity=0.228 Sum_probs=208.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHH--HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEee
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt--~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v 104 (957)
..+++|.++++++.+++++++++|||+|||. ++|..+. . +.++++.|.+.++.+....+.. .|.. ++...
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~-g~tlVisPl~sL~~dqv~~l~~-~gi~----~~~~~ 96 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D-GLTLVVSPLISLMKDQVDQLLA-NGVA----AACLN 96 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C-CCEEEEecHHHHHHHHHHHHHH-cCCc----EEEEc
Confidence 4668999999999999999999999999995 5555443 2 3466667777776666666543 2322 22211
Q ss_pred ec----------ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHHHH--HHHHHHhcCCCce
Q 002165 105 GH----------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLV--CVKQLLLKKNDLR 171 (957)
Q Consensus 105 ~~----------~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~--~lk~l~~~~~~lk 171 (957)
.. ........+|+|+||+.|........+...++++|||||||..+-. .||... .+..+....++.+
T Consensus 97 s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~ 176 (607)
T PRK11057 97 STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP 176 (607)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCc
Confidence 11 1112356789999999987532222233347999999999954322 234332 3444555568899
Q ss_pred EEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
++++|||++.....++...++...+. .......... +.| ... .
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~--~~~~~~~r~n-----l~~-----------------------~v~------~- 219 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPL--IQISSFDRPN-----IRY-----------------------TLV------E- 219 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeE--EEECCCCCCc-----cee-----------------------eee------e-
Confidence 99999999877655555543322222 1111110000 000 000 0
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eE
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kV 330 (957)
.... +..++..+... .++++||||+++++++.++..|.. .++.+..+||+|+.++|..+++.|+.++ +|
T Consensus 220 -~~~~----~~~l~~~l~~~---~~~~~IIFc~tr~~~e~la~~L~~--~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~V 289 (607)
T PRK11057 220 -KFKP----LDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQS--RGISAAAYHAGLDNDVRADVQEAFQRDDLQI 289 (607)
T ss_pred -ccch----HHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHCCCCCE
Confidence 0000 11222222222 246899999999999999999984 4688999999999999999999999888 99
Q ss_pred EEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 331 lVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||||+++++|||+|+|++||+ ||.|.+ ..+|+||+|||||. .+|.|+.+|+..++.
T Consensus 290 LVaT~a~~~GIDip~V~~VI~--------~d~P~s----------~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 290 VVATVAFGMGINKPNVRFVVH--------FDIPRN----------IESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred EEEechhhccCCCCCcCEEEE--------eCCCCC----------HHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999999 998874 45569999999999 579999999987654
No 40
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.8e-31 Score=271.24 Aligned_cols=313 Identities=19% Similarity=0.270 Sum_probs=228.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---CC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+.+|+.++..|.++++||.++..|+|||..+..-++.. .. ..++|+.|+|.+|.|+.+-+.. +|...+..+-.
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hcccccceEEE
Confidence 467899999999999999999999999995444333322 11 2577788888888887776543 23333333333
Q ss_pred eeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.. +...-+.+++.+|||++++++..+.+....+.++|+|||+| +++..|-..+...+...+|+.|++++|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 33222 23456789999999999999998877777999999999996 566678778887777788999999999
Q ss_pred ccCChHHHH--HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 177 ATADITKYR--DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 177 ATld~~~~~--~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
||++.+.++ +.|- +.|+.+..-... ...--++.+|+. .+-+
T Consensus 208 ATlp~eilemt~kfm----tdpvrilvkrde--ltlEgIKqf~v~-------------------------------ve~E 250 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFM----TDPVRILVKRDE--LTLEGIKQFFVA-------------------------------VEKE 250 (400)
T ss_pred ccCcHHHHHHHHHhc----CCceeEEEecCC--Cchhhhhhheee-------------------------------echh
Confidence 999876554 3332 234544322110 000001111111 1111
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
+-..+.+.++ ..... -.+.+|||+|++.++.+.+.++ ..++.|..+||.|++++|..++..|+.+. +|+++
T Consensus 251 ewKfdtLcdL----Yd~Lt--ItQavIFcnTk~kVdwLtekm~--~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 251 EWKFDTLCDL----YDTLT--ITQAVIFCNTKRKVDWLTEKMR--EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred hhhHhHHHHH----hhhhe--hheEEEEecccchhhHHHHHHH--hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 1112222233 22221 2478999999999999999998 45689999999999999999999999999 99999
Q ss_pred ccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhh
Q 002165 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (957)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~ 405 (957)
|++-++|||+|.|..||| ||.|...+.| +||+||.||- +.|.++.++..++...
T Consensus 323 TDVwaRGiDv~qVslviN--------YDLP~nre~Y----------IHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVIN--------YDLPNNRELY----------IHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred echhhccCCcceeEEEEe--------cCCCccHHHH----------hhhhccccccCCcceEEEEecHHHHHH
Confidence 999999999999999999 9999877666 9999999999 7899999999876643
No 41
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=6.6e-31 Score=321.55 Aligned_cols=319 Identities=17% Similarity=0.134 Sum_probs=206.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.++++|.++++.+.+++++++++|||||||..+..++++. ...+++++.|++.+|.++.+.+.... ..+..++-
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT--LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEE
Confidence 5899999999999999999999999999996655554432 23468888899999998888876542 12222322
Q ss_pred eeecc-----cccCCCCcEEEEcHHHHHHHHHccC----CCcCcceEEEEcccccccccccHH---HHHHHH---HHh-c
Q 002165 103 HIGHS-----KHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVESDLV---LVCVKQ---LLL-K 166 (957)
Q Consensus 103 ~v~~~-----~~~~~~t~Ivv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHER~~~~d~l---l~~lk~---l~~-~ 166 (957)
..+.. .....+.+|+++||++|...+.... ..+.++++|||||||. ..+ .|. ..++++ +.. .
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g-~fg~~~~~il~rL~ri~~~~ 191 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRG-VFGSHVALVLRRLRRLCARY 191 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccC-ccHHHHHHHHHHHHHHHHhc
Confidence 21211 1234568999999999975443211 1145899999999994 322 122 223333 322 2
Q ss_pred CCCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeeh-HHHHHHHhccCCCCccccccccccCCC
Q 002165 167 KNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSY-LEQVTELLGVDHGMTSELSSLRYCSGP 244 (957)
Q Consensus 167 ~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~y-l~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (957)
..+.|+|++|||+ ++..+.+.+.. .++.++.....+... ..+.+ .+...+. . ..
T Consensus 192 g~~~q~i~~SATi~n~~~~~~~l~g----~~~~~i~~~~~~~~~---~~~~~~~p~~~~~----------------~-~~ 247 (742)
T TIGR03817 192 GASPVFVLASATTADPAAAASRLIG----APVVAVTEDGSPRGA---RTVALWEPPLTEL----------------T-GE 247 (742)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHcC----CCeEEECCCCCCcCc---eEEEEecCCcccc----------------c-cc
Confidence 4568999999997 45555444422 223333222211110 11110 0000000 0 00
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC------CCCcEEEEecCCCCHHHHH
Q 002165 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------SSFFKVHILHSSVDTEQAL 318 (957)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~------~~~~~v~~lhs~l~~~er~ 318 (957)
.............. +++..+... +.++||||++++.++.++..|... ..+..+..+||++++++|.
T Consensus 248 ~~~~~r~~~~~~~~----~~l~~l~~~----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 248 NGAPVRRSASAEAA----DLLADLVAE----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred cccccccchHHHHH----HHHHHHHHC----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHH
Confidence 00000000011122 223333222 358999999999999999887632 1145788999999999999
Q ss_pred HHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEE
Q 002165 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (957)
Q Consensus 319 ~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~ 396 (957)
.+++.|++|+ ++|||||++|+|||||++++||+ ||.|.. .++|+||+|||||. ..|.++.
T Consensus 320 ~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~s----------~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 320 ELERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPGT----------RASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred HHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCCC----------HHHHHHhccccCCCCCCcEEEE
Confidence 9999999999 99999999999999999999999 887774 45669999999999 6799998
Q ss_pred eec
Q 002165 397 LVT 399 (957)
Q Consensus 397 L~s 399 (957)
+.+
T Consensus 382 v~~ 384 (742)
T TIGR03817 382 VAR 384 (742)
T ss_pred EeC
Confidence 886
No 42
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=288.72 Aligned_cols=433 Identities=19% Similarity=0.189 Sum_probs=287.2
Q ss_pred chHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHH----HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~----lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
+.|+|.-++++ +++++|.+|+.+|+||||..--.. ++. +.++.++..|--.+|.|-...+.+.. ..+|..|..
T Consensus 217 LlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rY-s~Lglkvai 294 (830)
T COG1202 217 LLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERY-SKLGLKVAI 294 (830)
T ss_pred ecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHh-hcccceEEE
Confidence 45778888887 679999999999999999432222 222 23567788888888888887776665 467766655
Q ss_pred eeecc----------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc-----cccccccHHHHHHHHHHhcC
Q 002165 103 HIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 103 ~v~~~----------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH-----ER~~~~d~ll~~lk~l~~~~ 167 (957)
.|+.. ...+.+++|+|+|.+=+-.+++.+. .+.+++.|||||+| ||+.. +.+++.++....
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~-~lgdiGtVVIDEiHtL~deERG~R---LdGLI~RLr~l~ 370 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK-DLGDIGTVVIDEIHTLEDEERGPR---LDGLIGRLRYLF 370 (830)
T ss_pred EechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC-cccccceEEeeeeeeccchhcccc---hhhHHHHHHHhC
Confidence 55432 1235678999999988877777653 46699999999999 34444 445555555567
Q ss_pred CCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCC
Q 002165 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (957)
Q Consensus 168 ~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (957)
++.|+|.+|||+ |++.++..++. ..|.....|.+-..+ +.+
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a----~lV~y~~RPVplErH-----lvf----------------------------- 412 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGA----KLVLYDERPVPLERH-----LVF----------------------------- 412 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCC----eeEeecCCCCChhHe-----eee-----------------------------
Confidence 899999999997 99999999974 222222222110000 000
Q ss_pred CcccccCChhHHHHHHHHHHHHHhhCC--CCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcc
Q 002165 247 SMANAEIKPEVHKLIHDLVLHIHKNES--DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (957)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~--~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f 324 (957)
.....+..+++..++..-..++. .-.|++|||.++++.++.++..|. ..++.+.++|+||+..+|+.++..|
T Consensus 413 ----~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~--~kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 413 ----ARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT--GKGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred ----ecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh--cCCcccccccCCCcHHHHHHHHHHH
Confidence 00112223444455443333322 235899999999999999999998 4579999999999999999999999
Q ss_pred cCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEEeech
Q 002165 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (957)
Q Consensus 325 ~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s~ 400 (957)
..+. .+||+|..++.|+|+|.-.+|.+ . -.+-..|+|..++.||.|||||. ..|++|.|..+
T Consensus 487 ~~q~l~~VVTTAAL~AGVDFPASQVIFE---------s-----LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 487 AAQELAAVVTTAALAAGVDFPASQVIFE---------S-----LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcCCcceEeehhhhhcCCCCchHHHHHH---------H-----HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9988 99999999999999998776654 1 12345699999999999999998 57999999875
Q ss_pred -hhhhh-ccCC----------CCCchhcC-----CHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHc
Q 002165 401 -SFFGT-LEDH----------ECPAILRL-----SLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (957)
Q Consensus 401 -~~~~~-l~~~----------~~PEI~r~-----~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~l 463 (957)
..|.. |.+. ..||-.-. .-.+.+|...+.. .+.+..+......+-+ .-....+++.|++.
T Consensus 553 g~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~-~s~~~i~~v~~~~~g~--~~~~~k~l~~Lee~ 629 (830)
T COG1202 553 GKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVT-NSLSVIERVNSLMLGA--AFDPKKALSKLEEY 629 (830)
T ss_pred ChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhc-CcHHHHhhcChhhccc--cCCHHHHHHHHHhc
Confidence 34432 2211 11221111 1112233321111 1122111111111111 11246889999999
Q ss_pred CccccCCCCCC-CccCHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHH
Q 002165 464 RALQKISPRGR-YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL 532 (957)
Q Consensus 464 gal~~~~~~g~-~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~ 532 (957)
|.|+.+ |+ .++|+.|++++..-+.|..|-.|..+. .-..+.+-|++.+.-.....+.++-+++.
T Consensus 630 g~i~~~---G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v--~~~~~pl~i~~~l~pfE~ayls~~l~r~i 694 (830)
T COG1202 630 GMIKKK---GNIVRPTPYGRAVAMSFLGPSEAEFIREGV--LASMDPLRIAAELEPFENAYLSGFLKRAI 694 (830)
T ss_pred CCeecc---CCEeeeccccceeEEeecCchHHHHHHHhh--hccCChHhHhhccccccccccChHHHHHH
Confidence 999974 54 689999999999999999998887653 12335677777775333333334333443
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=5.2e-30 Score=319.62 Aligned_cols=317 Identities=19% Similarity=0.208 Sum_probs=207.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C-------CCcEEEeccHHHHHHHHHHHHH-------
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-------MEPILCTQPRRFAVVAVAKMVA------- 89 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~-------~~~Iivt~Prrlaa~~va~rva------- 89 (957)
++++|.++++.+.++++++|+||||||||..+...+++. . ...++++.|.+.++.++.+++.
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997655554431 1 1247778888888888776543
Q ss_pred ---hhcCCcc-CCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCC--CcCcceEEEEccccccccccc---
Q 002165 90 ---KGRNCEL-GGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVESD--- 154 (957)
Q Consensus 90 ---~e~~~~l-g~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHER~~~~d--- 154 (957)
...|..+ +..|+...+... .....++|+|+|||.|...+.+..+ .+.++++|||||+|+ ..+..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 2223333 333343322211 1234679999999999876654322 245899999999994 33322
Q ss_pred HHHHHHHHHHhc-CCCceEEEecccC-ChHHHHHHHhhcC---CCceeEEEEecCCCccceeeeeeehHHHHHHHhccCC
Q 002165 155 LVLVCVKQLLLK-KNDLRVVLMSATA-DITKYRDYFRDLG---RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (957)
Q Consensus 155 ~ll~~lk~l~~~-~~~lklIlmSATl-d~~~~~~~f~~~~---~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~ 229 (957)
.+...+.++... .++.++|++|||+ +.+.+..|+.... ...++.++..... ..+...+..
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~~------------ 256 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV---KPFDIKVIS------------ 256 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC---ccceEEEec------------
Confidence 222233444333 3678999999998 5678888886431 1222232211110 011111100
Q ss_pred CCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC----CCcEE
Q 002165 230 GMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----SFFKV 305 (957)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~----~~~~v 305 (957)
+.. ............... ..+..+... .+++||||++++.++.++..|.... .+..+
T Consensus 257 --p~~---------~l~~~~~~~~~~~l~----~~L~~~i~~----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i 317 (876)
T PRK13767 257 --PVD---------DLIHTPAEEISEALY----ETLHELIKE----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNI 317 (876)
T ss_pred --cCc---------cccccccchhHHHHH----HHHHHHHhc----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccce
Confidence 000 000000001111122 222222221 3589999999999999999987532 23679
Q ss_pred EEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcC
Q 002165 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (957)
Q Consensus 306 ~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (957)
..+||+|+.++|..+++.|++|. +|||||+++|+|||||+|++||+ |+.|. |.++|+||+|
T Consensus 318 ~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~----------sv~~ylQRiG 379 (876)
T PRK13767 318 GAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPK----------SVSRLLQRIG 379 (876)
T ss_pred eeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCC----------CHHHHHHhcc
Confidence 99999999999999999999999 99999999999999999999998 88776 4566699999
Q ss_pred CCCCC----CCCeEEEe
Q 002165 385 RTGRT----CDGQVYRL 397 (957)
Q Consensus 385 RAGR~----~~G~~~~L 397 (957)
||||. ..|.++.+
T Consensus 380 RaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 380 RAGHRLGEVSKGRIIVV 396 (876)
T ss_pred cCCCCCCCCCcEEEEEc
Confidence 99986 24666654
No 44
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=283.51 Aligned_cols=313 Identities=25% Similarity=0.295 Sum_probs=230.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC---------C-cEEEeccHHHHHHHH---HHHHHhhcC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---------E-PILCTQPRRFAVVAV---AKMVAKGRN 93 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~---------~-~Iivt~Prrlaa~~v---a~rva~e~~ 93 (957)
-.+++|.++++..+.+++|+-.|-||||||.++...++.+-. + ..+++.|+|.+|.|+ ++++.+-.|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 357889999999999999999999999999777766553321 2 244555666666655 444444333
Q ss_pred CccCCeeEEee----ecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 94 CELGGEVGYHI----GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 94 ~~lg~~Vgy~v----~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
... ..-|.- .+.+.+..++.|+|||||+|+.++.-+...+.+++++||||++ |+.+..|...+-....+.+|+
T Consensus 325 l~~--v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpd 401 (731)
T KOG0339|consen 325 LRV--VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPD 401 (731)
T ss_pred ceE--EEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCc
Confidence 322 111220 1223345789999999999999998877888899999999999 999999999888777788999
Q ss_pred ceEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 170 lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.|.|++|||.... .+.+-+ ++ .++.++.......+......++
T Consensus 402 rQtllFsaTf~~kIe~lard~--L~--dpVrvVqg~vgean~dITQ~V~------------------------------- 446 (731)
T KOG0339|consen 402 RQTLLFSATFKKKIEKLARDI--LS--DPVRVVQGEVGEANEDITQTVS------------------------------- 446 (731)
T ss_pred ceEEEeeccchHHHHHHHHHH--hc--CCeeEEEeehhccccchhheee-------------------------------
Confidence 9999999997533 333222 22 2333332221111100000000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
.-... ...+..++.++..... .|++|||+..+.++++++..|. ..++.+..+||.+.+.+|.+++..|+.+
T Consensus 447 -V~~s~----~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lk--lk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 447 -VCPSE----EKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLK--LKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred -eccCc----HHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhc--cccceeeeecCchhhHHHHHHHHHHhhc
Confidence 00001 1122344555554444 5799999999999999999998 5679999999999999999999999999
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
+ .|+|||+++++|+|||+++.||+ ||.-..++.+ .||+||+||. ..|..|.|+|+.+.+
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdth----------thrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTH----------THRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeec--------ccccchhHHH----------HHHhhhcccccccceeeEEechhhHH
Confidence 8 99999999999999999999999 9999988887 9999999999 569999999987654
No 45
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=291.02 Aligned_cols=313 Identities=20% Similarity=0.244 Sum_probs=226.9
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C-----------CCcEEEeccHHHHHHHHHHHHHh
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-----------MEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~-----------~~~Iivt~Prrlaa~~va~rva~ 90 (957)
--.+++|+..++.+.++++++++|+||||||..+...+++. + ...+++..|+|.+|.|+..+..+
T Consensus 95 ~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k 174 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK 174 (482)
T ss_pred cCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh
Confidence 34678999999999999999999999999996665555432 1 23678888888899999888776
Q ss_pred hcCCc-cCCeeEEee---e-cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHHHHHHHHHH
Q 002165 91 GRNCE-LGGEVGYHI---G-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLL 164 (957)
Q Consensus 91 e~~~~-lg~~Vgy~v---~-~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~ 164 (957)
..+.. +-..+.|.- + .......+++|+|+|||.|.+.+..+.+.+.+..++|||||+ |+++ ..|...+-+.+.
T Consensus 175 ~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~ 253 (482)
T KOG0335|consen 175 FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVE 253 (482)
T ss_pred hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhc
Confidence 54422 112223321 1 122345689999999999999999998888899999999999 8888 888887776665
Q ss_pred hcC----CCceEEEecccCC--hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccc
Q 002165 165 LKK----NDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL 238 (957)
Q Consensus 165 ~~~----~~lklIlmSATld--~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~ 238 (957)
... ...+.+++|||.+ ...+..+|-.-. -..+.+..+....... ..++.++.+
T Consensus 254 ~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~~~~ni--~q~i~~V~~------------------ 312 (482)
T KOG0335|consen 254 QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGSTSENI--TQKILFVNE------------------ 312 (482)
T ss_pred ccCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeeccccccc--eeEeeeecc------------------
Confidence 442 3679999999964 334555553210 0112222222211110 011111110
Q ss_pred cccCCCCCCcccccCChhHHHHHHHHHHHHHhhC------CCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 002165 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE------SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV 312 (957)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~------~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l 312 (957)
.+...+++..+.... ......++|||.+++.+..+...|. ..++....+||..
T Consensus 313 -------------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~--~~~~~~~sIhg~~ 371 (482)
T KOG0335|consen 313 -------------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS--SNGYPAKSIHGDR 371 (482)
T ss_pred -------------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh--cCCCCceeecchh
Confidence 011112222222111 1112379999999999999999998 4568899999999
Q ss_pred CHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-C
Q 002165 313 DTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-C 390 (957)
Q Consensus 313 ~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~ 390 (957)
++.+|.+.++.|+.++ .|+|||||+++|+|||+|++||+ ||.|...+.| +||+||+||. .
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Y----------vHRIGRTGR~Gn 433 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDY----------VHRIGRTGRVGN 433 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhH----------HHhccccccCCC
Confidence 9999999999999999 99999999999999999999999 9999998887 9999999999 5
Q ss_pred CCeEEEeec
Q 002165 391 DGQVYRLVT 399 (957)
Q Consensus 391 ~G~~~~L~s 399 (957)
.|.+..|+.
T Consensus 434 ~G~atsf~n 442 (482)
T KOG0335|consen 434 GGRATSFFN 442 (482)
T ss_pred CceeEEEec
Confidence 799999988
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=2.7e-29 Score=303.67 Aligned_cols=305 Identities=18% Similarity=0.169 Sum_probs=206.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec-
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~- 106 (957)
.++.|.++++++.+++++++++|||+|||..+..+.+... +..+|+.|.+.++.+....+.. +| ..+++....
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-g~~lVisPl~sL~~dq~~~l~~-~g----i~~~~~~s~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-GLTVVISPLISLMKDQVDQLRA-AG----VAAAYLNSTL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-CcEEEEcCCHHHHHHHHHHHHH-cC----CcEEEEeCCC
Confidence 5789999999999999999999999999954333333333 3455556766666665565544 33 333332111
Q ss_pred --c-------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHHHHH--HHHHHhcCCCceEEE
Q 002165 107 --S-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVL 174 (957)
Q Consensus 107 --~-------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~~--lk~l~~~~~~lklIl 174 (957)
. .......+|+|+||+.|........+...++++|||||||..+.. .||...+ +..+....++.++|+
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 1 112356799999999997543333333458999999999954322 3454333 333444456677999
Q ss_pred ecccCChHHHHHHHhhcCCCceeEEEEecCCCc-cceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
+|||++.....+....++...+..+. ..... ...+.+. ..
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~-------------------------------------~~ 208 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFI--TSFDRPNLRFSVV-------------------------------------KK 208 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCCCcEEEEE-------------------------------------eC
Confidence 99999877666655544322222111 11100 0000000 00
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
....+ .+...+.. .. +++.||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|..++ +|||
T Consensus 209 -~~~~~---~l~~~l~~-~~--~~~~IIf~~sr~~~e~la~~L~~--~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 209 -NNKQK---FLLDYLKK-HR--GQSGIIYASSRKKVEELAERLES--QGISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred -CCHHH---HHHHHHHh-cC--CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 00111 12222222 11 45889999999999999999984 4678899999999999999999999888 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||+++++|||+|+|++||+ ||++.+.+ +|.||+|||||. .+|.|+.+|+..+..
T Consensus 280 aT~a~~~GID~p~v~~VI~--------~~~p~s~~----------~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIH--------YDMPGNLE----------SYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EechhhccCcCCCCCEEEE--------cCCCCCHH----------HHhhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999999999999999 88887554 559999999998 589999999987654
No 47
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=274.37 Aligned_cols=314 Identities=21% Similarity=0.264 Sum_probs=228.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH--HHHHHh---------cCCCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLA---------ENMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l--p~~lle---------~~~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
..+|+|.++.+.++.++++|.+|.||+|||..+ |-++.- .....+++..|+|.+|+++.-.+.++.-..
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng 321 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNG 321 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcC
Confidence 357889999999999999999999999999544 333221 111257777888888888877666653222
Q ss_pred cCCeeEEee--ec--ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 96 LGGEVGYHI--GH--SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 96 lg~~Vgy~v--~~--~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
+....-|.. |. ...+..+..|+++|||.|.++..++.+++..+.++|+|||+ |++++.|-..+-|.++..+||.+
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcce
Confidence 222222221 11 12346789999999999999999888888899999999999 99999999999999999999999
Q ss_pred EEEecccCChH--HHH-HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCc
Q 002165 172 VVLMSATADIT--KYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (957)
Q Consensus 172 lIlmSATld~~--~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (957)
+++.|||.+.. +++ .|... ++-+ ++....-.....|+...
T Consensus 401 tvmTSATWP~~VrrLa~sY~Ke-----p~~v-~vGsLdL~a~~sVkQ~i------------------------------- 443 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKE-----PMIV-YVGSLDLVAVKSVKQNI------------------------------- 443 (629)
T ss_pred eeeecccCchHHHHHHHHhhhC-----ceEE-EecccceeeeeeeeeeE-------------------------------
Confidence 99999997543 333 44432 2211 11111000001111000
Q ss_pred ccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc
Q 002165 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (957)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r 328 (957)
. ..-..+..+ ++..+..+... ..++||||..+..++.+..-|. ..++....+||+-.+.+|+..++.|+.|.
T Consensus 444 ~-v~~d~~k~~----~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 444 I-VTTDSEKLE----IVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred E-ecccHHHHH----HHHHHHHhcCC-CceEEEEEechhhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 0 000111222 23333333322 4689999999988887776665 45688899999999999999999999999
Q ss_pred -eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 329 -kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
+|||||++|.+|+|+|||++|++ ||.|.+++.| .||+||+||. +.|..+.+++..+..
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeY----------VHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEY----------VHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred eEEEEEechhhcCCCchhcceeec--------cCCCccHHHH----------HHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999999999999999 9999998877 9999999999 689999999987654
No 48
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=277.35 Aligned_cols=339 Identities=21% Similarity=0.260 Sum_probs=218.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------CcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----------EPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----------~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
..+.+|.+.|+.++++++++|.+.||||||..+..++.+... .-.+|+.|+|.+|+|++.-+.+....-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 467899999999999999999999999999666555543211 125667788888899988887765532
Q ss_pred cCCeeEEeeeccccc------CCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHH---HHHHHh
Q 002165 96 LGGEVGYHIGHSKHL------SERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVC---VKQLLL 165 (957)
Q Consensus 96 lg~~Vgy~v~~~~~~------~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~---lk~l~~ 165 (957)
.=..-|+.++++++. ..+..|+|+|||+|++.+.+- .+.+.++++||+||+| |.++.+|-..+ ++.+-.
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhh
Confidence 222346667777654 457899999999999998853 4556699999999999 88888775443 333311
Q ss_pred ----c------CCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCC-----
Q 002165 166 ----K------KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG----- 230 (957)
Q Consensus 166 ----~------~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~----- 230 (957)
. .+.++-+++|||+... ..+.-+. .-..++-+- .... ..... ++......++.+
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd~-V~rLa~~-sLkDpv~I~-ld~s-~~~~~-------p~~~a~~ev~~~~~~~~ 386 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTDG-VNRLADL-SLKDPVYIS-LDKS-HSQLN-------PKDKAVQEVDDGPAGDK 386 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHHH-HHHHhhc-cccCceeee-ccch-hhhcC-------cchhhhhhcCCcccccc
Confidence 0 1236778999998522 2222211 111222221 1100 00000 000000000000
Q ss_pred ----CccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC--------
Q 002165 231 ----MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------- 298 (957)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------- 298 (957)
.-++.+..+|...|.. -....+ ..++....+.+.+ .+++||+.+.+.++.-++.+..
T Consensus 387 l~~~~iPeqL~qry~vVPpK--------LRLV~L-aa~L~~~~k~~~~--qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 387 LDSFAIPEQLLQRYTVVPPK--------LRLVAL-AALLLNKVKFEEK--QKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred cccccCcHHhhhceEecCCc--------hhHHHH-HHHHHHHhhhhhh--ceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 0111122222222211 111112 2344444444443 3899999999999876666541
Q ss_pred ------------CCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCC
Q 002165 299 ------------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (957)
Q Consensus 299 ------------~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~ 365 (957)
...+.+++-|||+|++++|..+++.|...+ -|++|||+|++|+|+|+|+.||. ||+|.
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~- 526 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF- 526 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCC-
Confidence 112457899999999999999999998877 99999999999999999999999 99998
Q ss_pred ccccceeecCHHhHHHhcCCCCCC-CCCeEEEeec--hhhhhhc
Q 002165 366 IDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT--KSFFGTL 406 (957)
Q Consensus 366 ~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s--~~~~~~l 406 (957)
|.++|+||+||+.|. ..|....+.. +.+|...
T Consensus 527 ---------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 527 ---------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred ---------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 556669999999998 4577655544 4556443
No 49
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-28 Score=272.87 Aligned_cols=355 Identities=20% Similarity=0.290 Sum_probs=240.2
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
...+-...||..+....+.+ |++|+.|||-|||+.....+. +.+ ++++++.|++-++.|-+....+.+|.+-..
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 44567788999999887764 999999999999965554443 233 379999999999999999999998876555
Q ss_pred eeEEe--eeccc--ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 99 EVGYH--IGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 99 ~Vgy~--v~~~~--~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.+... ++-+. ....+.+|+|+||+++.+-+..+.+++.++++||+|||| |.........+.+.++....+..+++
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEE
Confidence 44332 22221 135678999999999999999998888899999999999 88887777778888888888899999
Q ss_pred ecccC--ChHHHHHHHhhcCCCceeEEEEecCCC-ccceeeeeeeh--------HHHHHHHh--------------ccCC
Q 002165 175 MSATA--DITKYRDYFRDLGRGERVEVLAIPSTN-QRTIFQRRVSY--------LEQVTELL--------------GVDH 229 (957)
Q Consensus 175 mSATl--d~~~~~~~f~~~~~~~~v~v~~~~~~~-~~~~~~v~v~y--------l~~~~~~l--------------~~~~ 229 (957)
||||+ +.+.+.+...+++-. .+++.+-.... .......++.+ ..++.+.+ ++..
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe-~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIE-KVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcc-eEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 99997 788899988887532 12222111110 00111111100 00000000 0000
Q ss_pred CCcc----ccc--------------------------------------------cccccCC----CCC--C------cc
Q 002165 230 GMTS----ELS--------------------------------------------SLRYCSG----PSP--S------MA 249 (957)
Q Consensus 230 ~~~~----~~~--------------------------------------------~~~~~~~----~~~--~------~~ 249 (957)
+... +.. ..+|... ... . ..
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 0000 000 0000000 000 0 00
Q ss_pred cccCCh---------------hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEe------
Q 002165 250 NAEIKP---------------EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL------ 308 (957)
Q Consensus 250 ~~~~~~---------------~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~l------ 308 (957)
+..... ...+.+.+++.......+ +.+++||+.-++.++.+...|.+.+....+.++
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~--~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNG--DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCC--CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 000000 001222233333332222 469999999999999999999876655542221
Q ss_pred -cCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCC
Q 002165 309 -HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRT 386 (957)
Q Consensus 309 -hs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRA 386 (957)
..||++.+|.++++.|+.|. +|||||+|+|.|+|||++++||- |++....-.. +||.||+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvpSeIR~----------IQR~GRT 466 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVPSEIRS----------IQRKGRT 466 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCcHHHHH----------HHhhCcc
Confidence 25799999999999999999 99999999999999999999998 9987744444 9999999
Q ss_pred CCCCCCeEEEeechh
Q 002165 387 GRTCDGQVYRLVTKS 401 (957)
Q Consensus 387 GR~~~G~~~~L~s~~ 401 (957)
||.++|.+|.|+++.
T Consensus 467 GR~r~Grv~vLvt~g 481 (542)
T COG1111 467 GRKRKGRVVVLVTEG 481 (542)
T ss_pred ccCCCCeEEEEEecC
Confidence 999999999999875
No 50
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6e-29 Score=263.35 Aligned_cols=316 Identities=18% Similarity=0.243 Sum_probs=234.0
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 28 i~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
.+.+|+.+++.++.+ +++|.++-.|+|||+.+...+|..-- ...+|+.|.|.+|.+.-+-+ .++|...+..+
T Consensus 113 PskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita 191 (477)
T KOG0332|consen 113 PSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTA 191 (477)
T ss_pred cchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeE
Confidence 356899999999865 69999999999999998888875422 35778899999998877654 67887777778
Q ss_pred EEeeecccccCC---CCcEEEEcHHHHHHHHHc-cCCCcCcceEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEe
Q 002165 101 GYHIGHSKHLSE---RSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 101 gy~v~~~~~~~~---~t~Ivv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHER~~~~d-~ll~~lk~l~~~~~~lklIlm 175 (957)
.|.++....... ..+|+++|||.+++++.. ..+.+..+.++|+|||+ -+++++ |...-++......++.+++++
T Consensus 192 ~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLF 270 (477)
T KOG0332|consen 192 SYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLF 270 (477)
T ss_pred EEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEee
Confidence 899887744322 468999999999999886 55666699999999999 455553 545555555555678999999
Q ss_pred cccCChHHHHHHHhhc-CCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 176 SATADITKYRDYFRDL-GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 176 SATld~~~~~~~f~~~-~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
|||.+.. ...|-..+ ....++.+.. . .-..++++.+|+ .....
T Consensus 271 SATf~e~-V~~Fa~kivpn~n~i~Lk~-e---el~L~~IkQlyv-------------------------------~C~~~ 314 (477)
T KOG0332|consen 271 SATFVEK-VAAFALKIVPNANVIILKR-E---ELALDNIKQLYV-------------------------------LCACR 314 (477)
T ss_pred echhHHH-HHHHHHHhcCCCceeeeeh-h---hccccchhhhee-------------------------------eccch
Confidence 9997633 33333322 2222222111 1 112333333332 22223
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
.+.++.+.++...+. -|+.+|||.|+..+..++..+. ..|..|..+||.|..++|..+++.|+.|+ +|+|+
T Consensus 315 ~~K~~~l~~lyg~~t------igqsiIFc~tk~ta~~l~~~m~--~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLT------IGQSIIFCHTKATAMWLYEEMR--AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred hhHHHHHHHHHhhhh------hhheEEEEeehhhHHHHHHHHH--hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 334444444332211 3688999999999999999998 45688999999999999999999999999 99999
Q ss_pred ccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
||+.++|||++.|.+||| ||.|.....- -..+.|+||+||+||- +.|.+|.|+...
T Consensus 387 TnV~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred echhhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 999999999999999999 9988765432 3457789999999999 679999988753
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=2.3e-28 Score=301.85 Aligned_cols=299 Identities=15% Similarity=0.167 Sum_probs=207.3
Q ss_pred CchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
..++.|.++++.+.++ .+.+++|+||||||..+...++.. ...+++++.|++.+|.|.++.+...+. ..+.
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~i 529 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA-NFPV 529 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc-cCCc
Confidence 3589999999999875 689999999999996554444322 225788899999999999998877543 2333
Q ss_pred eeEEeeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC
Q 002165 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (957)
Q Consensus 99 ~Vgy~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~ 168 (957)
.++...++.. ......+|+|+||..+ .+.+.+.++++|||||+|. . .......+....+
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-f-----gv~~~~~L~~~~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-F-----GVKQKEKLKELRT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-c-----chhHHHHHHhcCC
Confidence 4443323211 1133689999999543 2334566999999999994 2 1222233334467
Q ss_pred CceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCc
Q 002165 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (957)
Q Consensus 169 ~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (957)
+.++++||||+.+..+........ ...++..+.. . ..+++.++.+
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~---d~s~I~~~p~--~-R~~V~t~v~~----------------------------- 643 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIR---DLSIIATPPE--D-RLPVRTFVME----------------------------- 643 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCC---CcEEEecCCC--C-ccceEEEEEe-----------------------------
Confidence 789999999988776655443211 1222222211 1 1122221110
Q ss_pred ccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc
Q 002165 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (957)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r 328 (957)
.....+.+. +...+. .+++++||+|+.++++.+++.|....+++.+..+||+|++++|..+++.|+.|+
T Consensus 644 ---~~~~~i~~~---i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk 712 (926)
T TIGR00580 644 ---YDPELVREA---IRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE 712 (926)
T ss_pred ---cCHHHHHHH---HHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 000011111 111121 146899999999999999999987656789999999999999999999999998
Q ss_pred -eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 329 -kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
+|||||+++|+|||||++++||. +|.+.. +-+++.||+||+||. +.|.||.++++
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred CCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 99999999999999999999997 666531 234669999999998 68999999875
No 52
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.9e-29 Score=277.90 Aligned_cols=325 Identities=20% Similarity=0.231 Sum_probs=215.1
Q ss_pred chHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhcC----------------CCc--EEEeccHHHHHHHHHHHH
Q 002165 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN----------------MEP--ILCTQPRRFAVVAVAKMV 88 (957)
Q Consensus 28 i~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~~----------------~~~--Iivt~Prrlaa~~va~rv 88 (957)
.+++|...+++...+ .+++-.|+||||||.++-.++++.. +.+ -+|+.|+|.+|.|+.+.+
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 457898889888777 7899999999999977766666511 112 456667777788887766
Q ss_pred Hhh---cCCccCCeeEEe-e-ecccccCCCCcEEEEcHHHHHHHHHccCC---CcCcceEEEEcccccccccccHHHH--
Q 002165 89 AKG---RNCELGGEVGYH-I-GHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLV-- 158 (957)
Q Consensus 89 a~e---~~~~lg~~Vgy~-v-~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHER~~~~d~ll~-- 158 (957)
... .+..+...+|.. + .+++.+...++|+|+|||+|+.++..+.. .+.++.++|+||++ |++.......
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els 362 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELS 362 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHH
Confidence 443 233333333321 1 23444567899999999999999876533 23489999999999 8887765443
Q ss_pred -HHHHHH--hcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCcccc
Q 002165 159 -CVKQLL--LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSEL 235 (957)
Q Consensus 159 -~lk~l~--~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~ 235 (957)
+++.+. ..++..|.+++|||++....+..-.... ... . ...+. ..++.....+++..
T Consensus 363 ~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k----~~~-----k--~~~~~---~kiq~Lmk~ig~~~------ 422 (731)
T KOG0347|consen 363 KLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK----KKD-----K--EDELN---AKIQHLMKKIGFRG------ 422 (731)
T ss_pred HHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh----ccc-----h--hhhhh---HHHHHHHHHhCccC------
Confidence 344443 2345679999999986443322221100 000 0 00000 01112222222110
Q ss_pred ccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCC---------CCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEE
Q 002165 236 SSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES---------DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH 306 (957)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~---------~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~ 306 (957)
.+...+..-.......+.+...+....+. ..+|+.|||||+.+.+..++-+|.. .++..+
T Consensus 423 ---------kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~--L~i~p~ 491 (731)
T KOG0347|consen 423 ---------KPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN--LDIPPL 491 (731)
T ss_pred ---------CCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh--cCCCCc
Confidence 00111111111111111111111111111 1268999999999999999999984 457889
Q ss_pred EecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 307 ~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
++|+.|.+.+|...++.|+... -|+||||+|++|+|||+|.+||+ |..|...+.| +||.||
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiY----------VHRSGR 553 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIY----------VHRSGR 553 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCcccee----------Eecccc
Confidence 9999999999999999998877 99999999999999999999999 9999988888 999999
Q ss_pred CCCC-CCCeEEEeechhh
Q 002165 386 TGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 386 AGR~-~~G~~~~L~s~~~ 402 (957)
+.|. ..|....|+.+.+
T Consensus 554 TARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 554 TARANSEGVSVMLCGPQE 571 (731)
T ss_pred cccccCCCeEEEEeChHH
Confidence 9999 6899999988754
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=6.1e-28 Score=294.31 Aligned_cols=300 Identities=20% Similarity=0.227 Sum_probs=202.1
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..+++.|.++++.+.++ .+++++|+||||||..+...++.. ...+++++.|++.+|.|.++.+...+. .+|
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 44799999999999876 389999999999996555444432 234688888999999999998876543 345
Q ss_pred CeeEEeeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 98 ~~Vgy~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
..++...+... ......+|+|+|++.+.. .+.+.++++|||||+| |. .......+....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H-rf-----g~~qr~~l~~~~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH-RF-----GVEQRLALREKG 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh-hh-----hHHHHHHHHhcC
Confidence 55665544332 123468999999987743 2345589999999999 32 111122233334
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
...++++||||+.+..+..-+. +......+...|. ++ .++...++.
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~--g~~~~s~i~~~p~---~r-~~i~~~~~~---------------------------- 453 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAY--GDLDVSVIDELPP---GR-KPITTVVIP---------------------------- 453 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHc--CCCceEEEecCCC---CC-CCcEEEEeC----------------------------
Confidence 4678999999987766543321 1111111111111 11 011111100
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHH--------HHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~--------~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~ 319 (957)
........+.+.+ .+ . .+++++||||..+ .++.+++.|.....++.+..+||+|+.++|..
T Consensus 454 ---~~~~~~~~~~i~~---~~-~----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 ---DSRRDEVYERIRE---EI-A----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred ---cccHHHHHHHHHH---HH-H----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 0000111122211 11 1 1468999999643 45566777765444578999999999999999
Q ss_pred HHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEe
Q 002165 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (957)
Q Consensus 320 i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L 397 (957)
+++.|+.|+ +|||||+++|+|||+|++++||. ||.+.. +-+++.||+||+||. .+|.||.+
T Consensus 523 i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 523 VMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred HHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEE
Confidence 999999998 99999999999999999999998 887641 235679999999998 68999999
Q ss_pred ec
Q 002165 398 VT 399 (957)
Q Consensus 398 ~s 399 (957)
++
T Consensus 586 ~~ 587 (681)
T PRK10917 586 YK 587 (681)
T ss_pred EC
Confidence 85
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=290.02 Aligned_cols=311 Identities=19% Similarity=0.242 Sum_probs=216.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH----HHhcC--CC----cEEEeccHHHHHHHHHHHHHh---hcC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAEN--ME----PILCTQPRRFAVVAVAKMVAK---GRN 93 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~----lle~~--~~----~Iivt~Prrlaa~~va~rva~---e~~ 93 (957)
-.++.|.++++.+.+|++++|+||||||||.+.-.+ |++.+ .. .++++.|-+.++..+-.++.. ++|
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G 101 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG 101 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999999443333 33442 11 467778888888888777644 344
Q ss_pred CccCCeeEEeeecc--cccCCCCcEEEEcHHHHHHHHHccCC--CcCcceEEEEccccc-----ccccccHHHHHHHHHH
Q 002165 94 CELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHE-----RSVESDLVLVCVKQLL 164 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~--~~~~~~t~Ivv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHE-----R~~~~d~ll~~lk~l~ 164 (957)
..+....|.....+ ......++|+++|||.|.-++....+ .+.++.+|||||+|+ |+...-+.+..++.+.
T Consensus 102 ~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~ 181 (814)
T COG1201 102 IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA 181 (814)
T ss_pred CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC
Confidence 44322222221111 22355789999999999877654321 244999999999996 4444444444444443
Q ss_pred hcCCCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCC
Q 002165 165 LKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (957)
Q Consensus 165 ~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (957)
++.|.|++|||. +++..++|+...+ .+++++.++... ...+++.....
T Consensus 182 ---~~~qRIGLSATV~~~~~varfL~g~~--~~~~Iv~~~~~k---~~~i~v~~p~~----------------------- 230 (814)
T COG1201 182 ---GDFQRIGLSATVGPPEEVAKFLVGFG--DPCEIVDVSAAK---KLEIKVISPVE----------------------- 230 (814)
T ss_pred ---cccEEEeehhccCCHHHHHHHhcCCC--CceEEEEcccCC---cceEEEEecCC-----------------------
Confidence 389999999997 8899999997532 256776665432 22222221110
Q ss_pred CCCCccc-ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHh
Q 002165 244 PSPSMAN-AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK 322 (957)
Q Consensus 244 ~~~~~~~-~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~ 322 (957)
+... .......++. +..+.+. ...+|||+||+..+|.++..|..... ..+..|||+++.++|..+++
T Consensus 231 ---~~~~~~~~~~~~~~~----i~~~v~~----~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 231 ---DLIYDEELWAALYER----IAELVKK----HRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred ---ccccccchhHHHHHH----HHHHHhh----cCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHH
Confidence 0000 1111122222 2223222 24899999999999999999986543 67899999999999999999
Q ss_pred cccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC----CCCeEEEe
Q 002165 323 ICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT----CDGQVYRL 397 (957)
Q Consensus 323 ~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~----~~G~~~~L 397 (957)
.|+.|. ++||||+.+|-||||.+|+.||+ |..|..+..+ .||+||+|+. ..|..|..
T Consensus 299 ~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~----------lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 299 RLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRF----------LQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred HHhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHH----------hHhccccccccCCcccEEEEec
Confidence 999999 99999999999999999999999 8888866665 9999999987 23554443
Q ss_pred e
Q 002165 398 V 398 (957)
Q Consensus 398 ~ 398 (957)
.
T Consensus 361 ~ 361 (814)
T COG1201 361 D 361 (814)
T ss_pred C
Confidence 3
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=2.4e-27 Score=287.31 Aligned_cols=299 Identities=20% Similarity=0.244 Sum_probs=197.7
Q ss_pred CchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
.+++.|.++++.|.++ .+.+++|+||||||..+...++.. ...+++++.|++.+|.|.++.+.+.+. .+|.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~gi 313 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA-PLGI 313 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccCc
Confidence 3789999999999765 268999999999996655444332 234788889999999999998876543 3344
Q ss_pred eeEEeeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC
Q 002165 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (957)
Q Consensus 99 ~Vgy~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~ 168 (957)
.++...+... ......+|+|+|++.+.+ .+.+.++++|||||+|.-+ .+.. ..+.....
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg--~~qr----~~l~~~~~ 382 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG--VEQR----KKLREKGQ 382 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc--HHHH----HHHHHhcc
Confidence 4554433211 123467999999997753 2345689999999999321 1111 11222222
Q ss_pred ---CceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 169 ---DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 169 ---~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
..++++||||+.+..+..... +.-....+...|.. + .++...++.
T Consensus 383 ~~~~~~~l~~SATp~prtl~l~~~--~~l~~~~i~~~p~~---r-~~i~~~~~~-------------------------- 430 (630)
T TIGR00643 383 GGFTPHVLVMSATPIPRTLALTVY--GDLDTSIIDELPPG---R-KPITTVLIK-------------------------- 430 (630)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHhc--CCcceeeeccCCCC---C-CceEEEEeC--------------------------
Confidence 678999999986665543221 11011111111110 0 111111100
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCH--------HHHHHHHHHhcCCCCCcEEEEecCCCCHHHH
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY--------YALEQQWHLMKPLSSFFKVHILHSSVDTEQA 317 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~--------~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er 317 (957)
........+.+ ...+. .+++++||||.. ..++.+++.|.....++.+..+||+|+.++|
T Consensus 431 -----~~~~~~~~~~i---~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR 497 (630)
T TIGR00643 431 -----HDEKDIVYEFI---EEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEK 497 (630)
T ss_pred -----cchHHHHHHHH---HHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHH
Confidence 00001111111 11111 146899999976 3456677777654467889999999999999
Q ss_pred HHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEE
Q 002165 318 LMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVY 395 (957)
Q Consensus 318 ~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~ 395 (957)
..+++.|+.|+ +|||||+++|+|||+|++++||. ||.+.. +-+++.||+||+||. .+|.||
T Consensus 498 ~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 498 EAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcEEE
Confidence 99999999988 99999999999999999999998 776641 345679999999998 689999
Q ss_pred Eeec
Q 002165 396 RLVT 399 (957)
Q Consensus 396 ~L~s 399 (957)
.++.
T Consensus 561 l~~~ 564 (630)
T TIGR00643 561 LVYK 564 (630)
T ss_pred EEEC
Confidence 9983
No 56
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=280.70 Aligned_cols=445 Identities=16% Similarity=0.151 Sum_probs=274.9
Q ss_pred chHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHHHHHH----hc--------CCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 28 VMSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLL----AE--------NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 28 i~~~Q~~il~~l-~~~~~vII~a~TGSGKTt~lp~~ll----e~--------~~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
...+|.++++.. ..+.|.+||||||||||-.+...++ ++ +.-+|+++.|.+.+|..+++.+.+.++
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~- 189 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA- 189 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-
Confidence 456899999876 4678999999999999954444443 21 112799999999999999998888765
Q ss_pred ccCCeeEEeeecccc---cCCCCcEEEEcHHHHHHHHH--ccCCC-cCcceEEEEccccc----ccccccHHHHHH-HHH
Q 002165 95 ELGGEVGYHIGHSKH---LSERSKIVFKTAGVLLDEMR--DRGLN-ALKYKVIILDEVHE----RSVESDLVLVCV-KQL 163 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~~---~~~~t~Ivv~T~g~Ll~~l~--~~~l~-l~~~~~VIIDEaHE----R~~~~d~ll~~l-k~l 163 (957)
.+|..|+-..+.... .-.+++|+|+||+.+--.-+ .+... ...+.+|||||+|- |+.-.+.+.... +.+
T Consensus 190 ~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 190 PLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred cccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 455555544332221 13579999999998642211 11112 23899999999992 333333332222 222
Q ss_pred HhcCCCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccC
Q 002165 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (957)
Q Consensus 164 ~~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (957)
......+|+|++|||+ |.++++.|++.. ....++.....- +..|.+..+ ++ +..
T Consensus 270 essqs~IRivgLSATlPN~eDvA~fL~vn---~~~glfsFd~~y--RPvpL~~~~-------iG-------------~k~ 324 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPNYEDVARFLRVN---PYAGLFSFDQRY--RPVPLTQGF-------IG-------------IKG 324 (1230)
T ss_pred HhhhhheEEEEeeccCCCHHHHHHHhcCC---Cccceeeecccc--cccceeeeE-------Ee-------------eec
Confidence 2445779999999996 899999999742 011122221110 000111000 00 000
Q ss_pred CCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC------------CC--C------
Q 002165 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------------SS--F------ 302 (957)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~------------~~--~------ 302 (957)
. ........+.+..++.+.+. ... +.+++|||+++.+..+.++.|... .. +
T Consensus 325 ~-~~~~~~~~~d~~~~~kv~e~----~~~----g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 325 K-KNRQQKKNIDEVCYDKVVEF----LQE----GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred c-cchhhhhhHHHHHHHHHHHH----HHc----CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 0 00001111222222222222 221 469999999999988888877521 00 1
Q ss_pred -cEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHH
Q 002165 303 -FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (957)
Q Consensus 303 -~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~ 380 (957)
..+..+|+||..++|..+++.|.+|- +|++||..++.|+++|+--++|- ....||...+. ..-.+-...+
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~----f~dlgilDVl 467 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGS----FVDLGILDVL 467 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCc----eeeehHHHHH
Confidence 35778999999999999999999888 99999999999999999888884 44558876642 2334667789
Q ss_pred HhcCCCCCC---CCCeEEEeechh---hhhhccCCCCC---------------chhcC---CHHHHHHHHhhh-------
Q 002165 381 QRRGRTGRT---CDGQVYRLVTKS---FFGTLEDHECP---------------AILRL---SLRLQVLLICCA------- 429 (957)
Q Consensus 381 QR~GRAGR~---~~G~~~~L~s~~---~~~~l~~~~~P---------------EI~r~---~L~~~iL~l~~~------- 429 (957)
|..|||||. ..|..+.+-+.+ .|..+...+.| ||.-. ++++.|=-|++-
T Consensus 468 QifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~ 547 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR 547 (1230)
T ss_pred HHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec
Confidence 999999998 468777666643 45555444433 22111 111111111100
Q ss_pred -hcccCCChhHhhhcccCCCC-----HHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcc-
Q 002165 430 -ESKAISDPKVLLQKALDPPY-----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE- 502 (957)
Q Consensus 430 -~~~~l~~~~~~l~~~l~pP~-----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~- 502 (957)
.....+.... ....-|. .+.+..++..|.....+--+..+|.+..|++||.|+.+.|..+..+.++....
T Consensus 548 KNP~~Ygi~~~---~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~ 624 (1230)
T KOG0952|consen 548 KNPMAYGISYE---ELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKS 624 (1230)
T ss_pred cChHHhhhhhh---cccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccc
Confidence 0000010000 1111222 13466777777777665433335778899999999999999999999999888
Q ss_pred cCcHHHHHHHHHHhcc
Q 002165 503 IGMLREGILLGILMDT 518 (957)
Q Consensus 503 ~~c~~e~l~iaa~ls~ 518 (957)
+--.+++|-+.++.+.
T Consensus 625 ~~se~~iL~lis~aeE 640 (1230)
T KOG0952|consen 625 FYSEDDILALISMAEE 640 (1230)
T ss_pred cCCHHHHHHHHHhhHh
Confidence 6678888888887653
No 57
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=2.3e-29 Score=266.42 Aligned_cols=310 Identities=20% Similarity=0.263 Sum_probs=214.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHH--HhcCC--------C-cEEEeccHHHHHHHHHHHHHhhc
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFL--LAENM--------E-PILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~l--le~~~--------~-~Iivt~Prrlaa~~va~rva~e~ 92 (957)
.-.+++|-+-++.++.+++.|-.|-|||||| +.+|..+ ++... + --+++.|.|.+|.+...-+....
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999999 4445443 33321 1 23445566666666654433221
Q ss_pred ------CCccCCeeEEeee------cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHH
Q 002165 93 ------NCELGGEVGYHIG------HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCV 160 (957)
Q Consensus 93 ------~~~lg~~Vgy~v~------~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~l 160 (957)
|.+. -..+..++ .-+.+..+.+|+|+|||+|.+++..+.+++.-.+++.+|||+ |+++..|-..+-
T Consensus 271 ~~L~e~g~P~-lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir 348 (610)
T KOG0341|consen 271 AALQEAGYPE-LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIR 348 (610)
T ss_pred HHHHhcCChh-hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHH
Confidence 1110 00111122 123456789999999999999999887777788999999999 999998876665
Q ss_pred HHHHhcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCc-cceeeeeeehHHHHHHHhccCCCCcccccccc
Q 002165 161 KQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (957)
Q Consensus 161 k~l~~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~ 239 (957)
..+.......|.+++|||++ .+++.|-...- -.|+.+ ++..... ....-.++.|+.+..
T Consensus 349 ~iF~~FK~QRQTLLFSATMP-~KIQ~FAkSAL-VKPvtv-NVGRAGAAsldViQevEyVkqEa----------------- 408 (610)
T KOG0341|consen 349 TIFSFFKGQRQTLLFSATMP-KKIQNFAKSAL-VKPVTV-NVGRAGAASLDVIQEVEYVKQEA----------------- 408 (610)
T ss_pred HHHHHHhhhhheeeeecccc-HHHHHHHHhhc-ccceEE-ecccccccchhHHHHHHHHHhhh-----------------
Confidence 44444456679999999997 34554443311 111211 1100000 000000111211110
Q ss_pred ccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 002165 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (957)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~ 319 (957)
.+..++..+.++. .++|||+..+.+++.++++|. ..++.++.+|||-++++|..
T Consensus 409 --------------------KiVylLeCLQKT~----PpVLIFaEkK~DVD~IhEYLL--lKGVEavaIHGGKDQedR~~ 462 (610)
T KOG0341|consen 409 --------------------KIVYLLECLQKTS----PPVLIFAEKKADVDDIHEYLL--LKGVEAVAIHGGKDQEDRHY 462 (610)
T ss_pred --------------------hhhhHHHHhccCC----CceEEEeccccChHHHHHHHH--HccceeEEeecCcchhHHHH
Confidence 1112333333333 489999999999999999987 56789999999999999999
Q ss_pred HHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEe
Q 002165 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (957)
Q Consensus 320 i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L 397 (957)
.++.|+.|+ .|+|||++|..|+|+|+|.+||| ||.|..++.| .||+||+||. ..|.+-.+
T Consensus 463 ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENY----------VHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 463 AIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENY----------VHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred HHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHH----------HHHhcccCCCCCcceeeee
Confidence 999999888 99999999999999999999999 9999987766 9999999999 67999988
Q ss_pred echh
Q 002165 398 VTKS 401 (957)
Q Consensus 398 ~s~~ 401 (957)
+.+.
T Consensus 525 INK~ 528 (610)
T KOG0341|consen 525 INKN 528 (610)
T ss_pred eccc
Confidence 8764
No 58
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.8e-29 Score=257.60 Aligned_cols=311 Identities=17% Similarity=0.228 Sum_probs=221.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC------CcEEEeccHHHHH--HHHHHHHHhhcCCccCCe
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAV--VAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~------~~Iivt~Prrlaa--~~va~rva~e~~~~lg~~ 99 (957)
.+|+|++.|+..+.+++++..|..|+|||.++..+++|.-. ..++++++|++|. -++.+++++.++..+-..
T Consensus 108 PSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 108 PSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVT 187 (459)
T ss_pred CCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEe
Confidence 45789999999999999999999999999877777777532 2455555555542 244555666555444333
Q ss_pred eEEeeeccc--ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 100 VGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 100 Vgy~v~~~~--~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
+|-..-.++ ++....+++|+|||++++++..+--.+.+...+|+|||+ ..++.||...+.+.+...+++.|+++.||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 332211122 246678999999999999998776567799999999999 78999999888888888888999999999
Q ss_pred cCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
|.+.. ...|.+.. ...|.++.-... -....+..+| . +.+ ..+.
T Consensus 267 TFP~t-Vk~Fm~~~-l~kPy~INLM~e---Ltl~GvtQyY-----------------------a------fV~--e~qK- 309 (459)
T KOG0326|consen 267 TFPLT-VKGFMDRH-LKKPYEINLMEE---LTLKGVTQYY-----------------------A------FVE--ERQK- 309 (459)
T ss_pred ccchh-HHHHHHHh-ccCcceeehhhh---hhhcchhhhe-----------------------e------eec--hhhh-
Confidence 97532 22222210 011222111100 0000011111 0 000 0111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
...+..+...+.- ...+|||++...+|-++..+.+ -++.....|+.|-++.|.+++..|++|. +.+||||.
T Consensus 310 vhCLntLfskLqI------NQsIIFCNS~~rVELLAkKITe--lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 310 VHCLNTLFSKLQI------NQSIIFCNSTNRVELLAKKITE--LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhHHHHHHHhcc------cceEEEeccchHhHHHHHHHHh--ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 1112223322221 3679999999999999999984 4588999999999999999999999999 99999999
Q ss_pred cccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
+.+||||++|++||| ||.+...++| .||+||+||- ..|.++.|++-++
T Consensus 382 ~TRGIDiqavNvVIN--------FDfpk~aEtY----------LHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVIN--------FDFPKNAETY----------LHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred hhcccccceeeEEEe--------cCCCCCHHHH----------HHHccCCccCCCcceEEEEEehhh
Confidence 999999999999999 9999977766 9999999999 6899999988543
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2.5e-27 Score=298.52 Aligned_cols=300 Identities=15% Similarity=0.185 Sum_probs=204.0
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHH--HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~--lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
...++.|.++++.+..+ .+++++|+||+|||..+... ..-....+++++.|++.+|.|+++.+...++. .+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CC
Confidence 34789999999999886 79999999999999543322 22223357888899999999999988765432 23
Q ss_pred CeeEEeeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 98 ~~Vgy~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
..++...++.. ......+|+|+||+.+. ..+.+.++++|||||+|. . . ......+...+
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahr-f-G----~~~~e~lk~l~ 746 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHR-F-G----VRHKERIKAMR 746 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhh-c-c----hhHHHHHHhcC
Confidence 33333323211 01246799999997542 334456899999999994 2 1 11223344456
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
++.++++||||+.+..+........ . ..++..+... + .+++.++..
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~--d-~~~I~~~p~~--r-~~v~~~~~~---------------------------- 792 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMR--D-LSIIATPPAR--R-LAVKTFVRE---------------------------- 792 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCC--C-cEEEecCCCC--C-CCceEEEEe----------------------------
Confidence 7899999999987766543332221 1 2222222211 1 112111000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
...... ...+...+. .+|+++||+|+.+.++.+++.|....++..+..+||+|++++|..++..|++|
T Consensus 793 ----~~~~~~---k~~il~el~-----r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G 860 (1147)
T PRK10689 793 ----YDSLVV---REAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 (1147)
T ss_pred ----cCcHHH---HHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 000001 112222222 14689999999999999999998766678899999999999999999999999
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
+ +|||||+++|+|||||++++||. ++... + +-+++.||+||+||. ..|.||.+++.
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 8 99999999999999999999994 22221 1 235679999999998 68999988864
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=1.5e-27 Score=271.90 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=186.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEee------ec-----cc
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI------GH-----SK 108 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v------~~-----~~ 108 (957)
+++|+||||||||+++..+++.. ...+++++.|++.++.+.++++...++..+|...|... .. +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 58999999999998888887743 23589999999999999999998876654432111100 00 00
Q ss_pred ---------ccCCCCcEEEEcHHHHHHHHHccC----CC--cCcceEEEEcccccccccc--cHHHHHHHHHHhcCCCce
Q 002165 109 ---------HLSERSKIVFKTAGVLLDEMRDRG----LN--ALKYKVIILDEVHERSVES--DLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 109 ---------~~~~~t~Ivv~T~g~Ll~~l~~~~----l~--l~~~~~VIIDEaHER~~~~--d~ll~~lk~l~~~~~~lk 171 (957)
.......|+++||+.++..+.... .. ....++|||||+|. ..+. +++..+++.+. ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH--HcCCC
Confidence 001246799999999988766421 00 11448999999994 4332 34444444443 45789
Q ss_pred EEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
+|+||||++ +.+.+++....... .....+..... .+ . ...+.... ...
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~--~~~~~~~~~~~-~~--~----------------------~~~~~~~~----~~~ 205 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVE--FNEPLDLKEER-RF--E----------------------RHRFIKIE----SDK 205 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcc--cccCCCCcccc-cc--c----------------------cccceeec----ccc
Confidence 999999997 55677765421110 00000000000 00 0 00000000 000
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHH----HhcccCC
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA----MKICKSH 327 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i----~~~f~~~ 327 (957)
... ...+.+++..+ . .++++||||+++++++.+++.|.+......+..+||++++.+|... ++.|+.+
T Consensus 206 ~~~---~~~l~~l~~~~---~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~ 277 (358)
T TIGR01587 206 VGE---ISSLERLLEFI---K--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN 277 (358)
T ss_pred ccC---HHHHHHHHHHh---h--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC
Confidence 000 11122222111 1 1469999999999999999999865555679999999999988664 7788888
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC--C---CeEEEeechh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC--D---GQVYRLVTKS 401 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~--~---G~~~~L~s~~ 401 (957)
+ +|||||+++|+||||| +++||. |+. +..++.||+||+||.+ . |.+|.++...
T Consensus 278 ~~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 278 EKFVIVATQVIEASLDIS-ADVMIT--------ELA------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CCeEEEECcchhceeccC-CCEEEE--------cCC------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 8 9999999999999996 777775 432 2356799999999973 2 3777777654
Q ss_pred h
Q 002165 402 F 402 (957)
Q Consensus 402 ~ 402 (957)
.
T Consensus 337 ~ 337 (358)
T TIGR01587 337 E 337 (358)
T ss_pred C
Confidence 3
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=1.4e-26 Score=278.20 Aligned_cols=326 Identities=16% Similarity=0.132 Sum_probs=192.9
Q ss_pred chHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCcc-----
Q 002165 28 VMSLREKIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCEL----- 96 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~-~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~l----- 96 (957)
.+++|.++++.+.+|+ ++++.+|||||||..+..+++-. ..++++++.|+|.+|.|+++.+..... .+
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k-~l~~~~~ 94 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE-RLPDVPE 94 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHH-Hhcccch
Confidence 8999999999999998 67888999999997665554422 224678888999999988776544221 11
Q ss_pred ------------------CCeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHcc---------CCC---cCcceE
Q 002165 97 ------------------GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDR---------GLN---ALKYKV 140 (957)
Q Consensus 97 ------------------g~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~---------~l~---l~~~~~ 140 (957)
+..+...++.. .....+++|+|+|++++.+..... ++. +.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~ 174 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDAL 174 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceE
Confidence 12233223332 123457899999976665433210 111 457999
Q ss_pred EEEcccccccccccHHHHHHHHHHh--cCC---CceEEEecccCChHHH--HHHHhhcCCCceeEEEEecCCCccceeee
Q 002165 141 IILDEVHERSVESDLVLVCVKQLLL--KKN---DLRVVLMSATADITKY--RDYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (957)
Q Consensus 141 VIIDEaHER~~~~d~ll~~lk~l~~--~~~---~lklIlmSATld~~~~--~~~f~~~~~~~~v~v~~~~~~~~~~~~~v 213 (957)
||||||| ++..|...+.+.+.. ..+ +.|+++||||++.+.. ...+.. .+...++.. . +....
T Consensus 175 LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~~--~----~l~a~ 243 (844)
T TIGR02621 175 IVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVLK--K----RLAAK 243 (844)
T ss_pred EEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc--CCceeeccc--c----ccccc
Confidence 9999999 445555443333332 122 3799999999965422 222211 111111100 0 00000
Q ss_pred eeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHH
Q 002165 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQW 293 (957)
Q Consensus 214 ~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~ 293 (957)
. . ..+... ........++.. +..+... .++++||||||++.++.++
T Consensus 244 k---------------------i-~q~v~v--------~~e~Kl~~lv~~-L~~ll~e---~g~~vLVF~NTv~~Aq~L~ 289 (844)
T TIGR02621 244 K---------------------I-VKLVPP--------SDEKFLSTMVKE-LNLLMKD---SGGAILVFCRTVKHVRKVF 289 (844)
T ss_pred c---------------------e-EEEEec--------ChHHHHHHHHHH-HHHHHhh---CCCcEEEEECCHHHHHHHH
Confidence 0 0 000000 000011112212 2222221 2468999999999999999
Q ss_pred HHhcCCCCCcEEEEecCCCCHHHHH-----HHHhcccC----C--------ceEEEEccccccCccCCCeeEEEeCCcce
Q 002165 294 HLMKPLSSFFKVHILHSSVDTEQAL-----MAMKICKS----H--------RKVILATNIAESSVTIPKVAYVIDSCRSL 356 (957)
Q Consensus 294 ~~L~~~~~~~~v~~lhs~l~~~er~-----~i~~~f~~----~--------rkVlVaTniae~GIdIp~V~~VId~G~~k 356 (957)
+.|.... + ..+||.|++.+|. .+++.|++ + .+|||||+++|+||||+. ++||+
T Consensus 290 ~~L~~~g--~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~----- 359 (844)
T TIGR02621 290 AKLPKEK--F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC----- 359 (844)
T ss_pred HHHHhcC--C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE-----
Confidence 9998532 3 8999999999999 67777865 2 479999999999999987 67775
Q ss_pred eeeecCCCCccccceeecCHHhHHHhcCCCCCCCC--CeEEEeechhhhhhc-cCCCCCchhcCCHHHHHH
Q 002165 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQVYRLVTKSFFGTL-EDHECPAILRLSLRLQVL 424 (957)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~--G~~~~L~s~~~~~~l-~~~~~PEI~r~~L~~~iL 424 (957)
++.+ ..+|+||+||+||.+. |..+.+++.+.-..- ...-.||+++..+..+.+
T Consensus 360 ---d~aP------------~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~ 415 (844)
T TIGR02621 360 ---DLAP------------FESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKK 415 (844)
T ss_pred ---CCCC------------HHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHH
Confidence 3322 2567999999999843 333444433211111 111236777665554433
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=1.7e-26 Score=292.06 Aligned_cols=303 Identities=21% Similarity=0.246 Sum_probs=187.5
Q ss_pred EEcCCCCcHHHHHHHHHH----hcC-----------CCcEEEeccHHHHHHHHHHHHHh----------hcCC-ccCCee
Q 002165 47 IVGETGCGKSSQVPQFLL----AEN-----------MEPILCTQPRRFAVVAVAKMVAK----------GRNC-ELGGEV 100 (957)
Q Consensus 47 I~a~TGSGKTt~lp~~ll----e~~-----------~~~Iivt~Prrlaa~~va~rva~----------e~~~-~lg~~V 100 (957)
|++|||||||..+-..++ ... ..+++++.|.+.++.++.+.+.. .++. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999955444332 211 13688888888888888877643 1111 234455
Q ss_pred EEeeeccc------ccCCCCcEEEEcHHHHHHHHHccC-CCcCcceEEEEcccccccccccH---HHHHHHHHHhc-CCC
Q 002165 101 GYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDL---VLVCVKQLLLK-KND 169 (957)
Q Consensus 101 gy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHER~~~~d~---ll~~lk~l~~~-~~~ 169 (957)
+...+... .....++|+|+|||.|..++.++. ..+.++++|||||+|+ ..+.+. +...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 54433221 124568999999999988776432 2356999999999994 333321 22233333332 457
Q ss_pred ceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeee-hHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 170 LRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 170 lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~-yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.|+|++|||+ |.+.+.+|+.. ..++.++..+.. +..++++. ..++..+... .. .........
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g---~~pv~Iv~~~~~---r~~~l~v~vp~~d~~~~~~-----~~-----~~~~~~~~~ 223 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGG---DRPVTVVNPPAM---RHPQIRIVVPVANMDDVSS-----VA-----SGTGEDSHA 223 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcC---CCCEEEECCCCC---cccceEEEEecCchhhccc-----cc-----cccccccch
Confidence 8999999998 67888888863 234555432221 11222211 1111000000 00 000000000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC--------------------------
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------- 301 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-------------------------- 301 (957)
.....+.+.+.. .++..+. . .+++|||+||++.++.++..|+....
T Consensus 224 ~r~~~i~~~v~~---~il~~i~-~----~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 224 GREGSIWPYIET---GILDEVL-R----HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred hhhhhhhHHHHH---HHHHHHh-c----CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 000011111111 1222221 1 35899999999999999988864210
Q ss_pred -----CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecC
Q 002165 302 -----FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS 375 (957)
Q Consensus 302 -----~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 375 (957)
.+.+..|||+|++++|..+++.|++|+ ++||||+++|.||||++|++||+ |+.|. |
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~gsP~----------s 357 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VATPL----------S 357 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eCCCC----------C
Confidence 123678999999999999999999999 99999999999999999999999 77665 5
Q ss_pred HHhHHHhcCCCCCCCCC
Q 002165 376 QSQAEQRRGRTGRTCDG 392 (957)
Q Consensus 376 kas~~QR~GRAGR~~~G 392 (957)
.++|+||+|||||...|
T Consensus 358 Vas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 358 VASGLQRIGRAGHQVGG 374 (1490)
T ss_pred HHHHHHHhCCCCCCCCC
Confidence 66779999999997433
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.3e-27 Score=259.55 Aligned_cols=316 Identities=19% Similarity=0.247 Sum_probs=205.5
Q ss_pred CchHHHHHHHHHHH---------cCCeEEEEcCCCCcHHHHHHHHHHhcCC------CcEEEeccHHHHHHHHHHHHHhh
Q 002165 27 PVMSLREKIVEKVL---------ENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAVVAVAKMVAKG 91 (957)
Q Consensus 27 Pi~~~Q~~il~~l~---------~~~~vII~a~TGSGKTt~lp~~lle~~~------~~Iivt~Prrlaa~~va~rva~e 91 (957)
-.+|+|..+++.++ ..+++.|.||||||||..+..+|...-. -+.+|+.|++.++.|+++.+...
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 35788999998874 2479999999999999444444433211 14567778888889998877654
Q ss_pred cCCccCCeeEEeeecccc------c-C----CCCcEEEEcHHHHHHHHH-ccCCCcCcceEEEEcccccccccccHHH--
Q 002165 92 RNCELGGEVGYHIGHSKH------L-S----ERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVL-- 157 (957)
Q Consensus 92 ~~~~lg~~Vgy~v~~~~~------~-~----~~t~Ivv~T~g~Ll~~l~-~~~l~l~~~~~VIIDEaHER~~~~d~ll-- 157 (957)
. ...|-.|+...+..+. + . ...+|+|+|||+|.+.+. ..++.+.+++++|||||| |.++.-|-.
T Consensus 239 ~-~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl 316 (620)
T KOG0350|consen 239 N-SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWL 316 (620)
T ss_pred c-cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHH
Confidence 3 2344455544343221 1 1 235999999999999998 567788899999999999 776653321
Q ss_pred ----HH---------HHHHHhc-------------------CCCceEEEecccC--ChHHHHHHHhhcCCCceeEEEEec
Q 002165 158 ----VC---------VKQLLLK-------------------KNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIP 203 (957)
Q Consensus 158 ----~~---------lk~l~~~-------------------~~~lklIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~~ 203 (957)
.. ...++.. .+.+.-+++|||+ ++.++.++--...+ +....-+
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr---l~~v~~~ 393 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR---LFHVSKP 393 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc---eEEeecc
Confidence 11 1111111 2234456677775 56666655432110 1110000
Q ss_pred CCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEe
Q 002165 204 STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (957)
Q Consensus 204 ~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl 283 (957)
. +-.+-++... ...+.. .+..+.+. .+...|.... ..++|+|+
T Consensus 394 ~--------~~ryslp~~l--------------~~~~vv------~~~~~kpl------~~~~lI~~~k---~~r~lcf~ 436 (620)
T KOG0350|consen 394 L--------IGRYSLPSSL--------------SHRLVV------TEPKFKPL------AVYALITSNK---LNRTLCFV 436 (620)
T ss_pred c--------ceeeecChhh--------------hhceee------cccccchH------hHHHHHHHhh---cceEEEEe
Confidence 0 0000011000 000000 00001110 1112222222 35899999
Q ss_pred CCHHHHHHHHHHhc-C-CCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeee
Q 002165 284 PTYYALEQQWHLMK-P-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFW 360 (957)
Q Consensus 284 ~~~~~ie~l~~~L~-~-~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~y 360 (957)
++.+.+.+++..|. . ...++.+-.+.|+++...|...++.|..|. +|+||+|++++|||+-+|+.||+ |
T Consensus 437 ~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Y 508 (620)
T KOG0350|consen 437 NSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------Y 508 (620)
T ss_pred cchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------c
Confidence 99999999998886 2 234466777899999999999999998888 99999999999999999999999 9
Q ss_pred cCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 361 DVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 361 d~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
|+|.....| .||+||++|. +.|.||.|.++++
T Consensus 509 d~P~~~kty----------VHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 509 DPPASDKTY----------VHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred CCCchhhHH----------HHhhcccccccCCceEEEeecccc
Confidence 999866655 9999999999 6899999998754
No 64
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.3e-26 Score=268.08 Aligned_cols=303 Identities=20% Similarity=0.210 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcCCCcEEEecc-HHHHHHHHHHHHHhhcCCccCCeeEEee--
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQP-RRFAVVAVAKMVAKGRNCELGGEVGYHI-- 104 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~~~~Iivt~P-rrlaa~~va~rva~e~~~~lg~~Vgy~v-- 104 (957)
+-|.++|+++.+++++++..|||.||| +|+|..+++ | ..+|+.| -.+.-.|+..-.+ .| ..+.+.-
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~-G--~TLVVSPLiSLM~DQV~~l~~--~G----i~A~~lnS~ 90 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE-G--LTLVVSPLISLMKDQVDQLEA--AG----IRAAYLNST 90 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC-C--CEEEECchHHHHHHHHHHHHH--cC----ceeehhhcc
Confidence 448999999999999999999999999 999999883 2 4455555 3333444444322 22 2222210
Q ss_pred --ecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccc-cHHHHH--HHHHHhcCCCceEE
Q 002165 105 --GHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES-DLVLVC--VKQLLLKKNDLRVV 173 (957)
Q Consensus 105 --~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~-d~ll~~--lk~l~~~~~~lklI 173 (957)
..+ .......+++|.+|++|...-..+.+....+++++|||||.-+-.. ||...+ +..+....+++.++
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 111 1123457999999999976533222223488999999999755443 666555 34455566799999
Q ss_pred EecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
.+|||.+.....+....++-..+..+..-..++ +..|.+.. .
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~-----------------------------~-------- 212 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVE-----------------------------K-------- 212 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhh-----------------------------c--------
Confidence 999999988877777665443332222111111 00110000 0
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
..... ++. .+........++.+|||.|+..+|.+++.|... ++.+..+||||+.++|..+.+.|..+. +|||
T Consensus 213 ~~~~~----q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiV 285 (590)
T COG0514 213 GEPSD----QLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMV 285 (590)
T ss_pred ccHHH----HHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 00000 111 121111223467899999999999999999854 799999999999999999999998887 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||+..++|||-|||++||+ ||.|..+++| .|-.|||||. .+..|+.||++.+..
T Consensus 286 AT~AFGMGIdKpdVRfViH--------~~lP~s~EsY----------yQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 286 ATNAFGMGIDKPDVRFVIH--------YDLPGSIESY----------YQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred EeccccCccCCCCceEEEE--------ecCCCCHHHH----------HHHHhhccCCCCcceEEEeeccccHH
Confidence 9999999999999999999 9999977666 9999999999 689999999987753
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=265.61 Aligned_cols=351 Identities=16% Similarity=0.228 Sum_probs=215.6
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
...+++..||.+++...+ ++|+||++|||+|||....-.++++ ..++|+++.|++.+..|....+.. ++...+
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~~~- 134 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIPYS- 134 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCccc-
Confidence 467999999999999988 9999999999999997666666554 235899999988776555443332 232211
Q ss_pred eeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCC-cCcceEEEEcccccccccccHHHHHHHHHHhcCCCc-
Q 002165 99 EVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLN-ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL- 170 (957)
Q Consensus 99 ~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~-l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l- 170 (957)
..|.. +... ......+|+|+||++|...|.+.... +..++++|||||| |+......-.+.+.++......
T Consensus 135 ~T~~l-~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQL-GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeec-cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 11111 1111 12346799999999999998865433 3689999999999 7777666667776666554444
Q ss_pred eEEEecccC--ChHHHHHHHhhcCCCceeEEEEec-------CCCccceeeeeee------------hHHHHHHHhc---
Q 002165 171 RVVLMSATA--DITKYRDYFRDLGRGERVEVLAIP-------STNQRTIFQRRVS------------YLEQVTELLG--- 226 (957)
Q Consensus 171 klIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~~-------~~~~~~~~~v~v~------------yl~~~~~~l~--- 226 (957)
|||++|||+ +.+...++...+-.. .++.... .......+++.+. +++.....+.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~as--ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCAS--LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhhee--cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 999999997 555666666554211 1110000 0001111222210 0000000000
Q ss_pred c---C-CC-Ccc-----------------cc--------------------cc----ccccCCCCCC-------------
Q 002165 227 V---D-HG-MTS-----------------EL--------------------SS----LRYCSGPSPS------------- 247 (957)
Q Consensus 227 ~---~-~~-~~~-----------------~~--------------------~~----~~~~~~~~~~------------- 247 (957)
. . .. ... +. .. ..+...-.+.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 0 0 00 000 00 00 0000000000
Q ss_pred ----------------cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC-CCCCcEEEEec-
Q 002165 248 ----------------MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILH- 309 (957)
Q Consensus 248 ----------------~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lh- 309 (957)
..+........+.+.+.+.......+ ..+++||+.+++.++.+...|.. ...+++...+-
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~--dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNP--DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCC--CccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 00000001111122222222222222 46899999999999999988873 22223322222
Q ss_pred -------CCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHH
Q 002165 310 -------SSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (957)
Q Consensus 310 -------s~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~Q 381 (957)
.+|++.+|.++++.|+.|+ +|||||+|+|.|+||+.++.||- ||..++.-.+ +|
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIrm----------IQ 510 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIRM----------VQ 510 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHHH----------HH
Confidence 3799999999999999999 99999999999999999999998 9988865555 99
Q ss_pred hcCCCCCCCCCeEEEeechh
Q 002165 382 RRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 382 R~GRAGR~~~G~~~~L~s~~ 401 (957)
|.|| ||.+.|+|+.|++..
T Consensus 511 rrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 511 RRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred Hhcc-ccccCCeEEEEEcch
Confidence 9999 999999999999953
No 66
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=7.3e-26 Score=252.95 Aligned_cols=315 Identities=17% Similarity=0.228 Sum_probs=222.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|..+|+++..+-++||++..|+|||..+....++. ....++|+.|+|..|+|+-..+......--|-.+..
T Consensus 48 ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csv 127 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSV 127 (980)
T ss_pred CCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEE
Confidence 368999999999999999999999999995444333332 223455555666666777665544322112222222
Q ss_pred eeec-----ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGH-----SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~-----~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d-~ll~~lk~l~~~~~~lklIlmS 176 (957)
-|++ +...-..++|+|+|||+++.+...+.++...++++|+|||+ ..+++. |...+-+.+-..+...|++++|
T Consensus 128 fIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~S 206 (980)
T KOG4284|consen 128 FIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFS 206 (980)
T ss_pred EecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEe
Confidence 2332 33334679999999999999999888888899999999999 566654 4444445555566678999999
Q ss_pred ccCCh---HHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 177 ATADI---TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 177 ATld~---~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
||.+. +.+.+|.++ +. ++..... ...++-++.+|.. .+.++ .
T Consensus 207 ATYp~nLdn~Lsk~mrd-----p~-lVr~n~~-d~~L~GikQyv~~-----------------------~~s~n-----n 251 (980)
T KOG4284|consen 207 ATYPRNLDNLLSKFMRD-----PA-LVRFNAD-DVQLFGIKQYVVA-----------------------KCSPN-----N 251 (980)
T ss_pred ccCchhHHHHHHHHhcc-----cc-eeecccC-Cceeechhheeee-----------------------ccCCc-----c
Confidence 99752 455666653 11 1111111 1122222222211 01111 1
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
.-+...+....+.++...-+ ....||||+....++.++..|. ..|+.+.++.|.|++.+|..++...+.-+ +|||
T Consensus 252 sveemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~--ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILV 327 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLK--SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILV 327 (980)
T ss_pred hHHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhh--ccCCCeEEeccccchhHHHHHHHHhhhceEEEEE
Confidence 11223333444555555544 3478999999999999999998 67799999999999999999999999988 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-CCeEEEeech
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTK 400 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~~~~L~s~ 400 (957)
+||..++|||-|.|+.||| .|++.+.++| .||+|||||.+ -|.++.++..
T Consensus 328 sTDLtaRGIDa~~vNLVVN--------iD~p~d~eTY----------~HRIGRAgRFG~~G~aVT~~~~ 378 (980)
T KOG4284|consen 328 STDLTARGIDADNVNLVVN--------IDAPADEETY----------FHRIGRAGRFGAHGAAVTLLED 378 (980)
T ss_pred ecchhhccCCccccceEEe--------cCCCcchHHH----------HHHhhhcccccccceeEEEecc
Confidence 9999999999999999999 9999888777 99999999994 6998888764
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=1.3e-24 Score=257.08 Aligned_cols=316 Identities=18% Similarity=0.151 Sum_probs=198.6
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
...++++|.+++..+..+++.++++|||+|||..+... +++....+++++.|++.++.|..+++.+......+ .++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~-~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE-AMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc-cee
Confidence 46789999999999999999999999999999655433 23444448999999999999999988764432211 121
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCCh
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~ 181 (957)
...+.. ......+|+|+|++.|.+.... .+.++++||||||| +....++ ..+++.+ .+..+++++|||+..
T Consensus 191 ~i~~g~-~~~~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH-~~~~~~~-~~il~~~---~~~~~~lGLTATp~~ 261 (501)
T PHA02558 191 KIYSGT-AKDTDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECH-LFTGKSL-TSIITKL---DNCKFKFGLTGSLRD 261 (501)
T ss_pred EEecCc-ccCCCCCEEEeeHHHHhhchhh---hccccCEEEEEchh-cccchhH-HHHHHhh---hccceEEEEeccCCC
Confidence 111111 1124579999999999865422 24589999999999 4544332 2333322 234579999999843
Q ss_pred HH-----HHHHHhhcCCCceeEEEEecC-CCccceee-----eeeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 002165 182 TK-----YRDYFRDLGRGERVEVLAIPS-TNQRTIFQ-----RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (957)
Q Consensus 182 ~~-----~~~~f~~~~~~~~v~v~~~~~-~~~~~~~~-----v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (957)
.. +..+|+.. ...+ .... ...+...+ +...+-+....... ...|. .....
T Consensus 262 ~~~~~~~~~~~fG~i----~~~v-~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~----------~~~~~----~~~~~ 322 (501)
T PHA02558 262 GKANILQYVGLFGDI----FKPV-TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK----------GEDYQ----EEIKY 322 (501)
T ss_pred ccccHHHHHHhhCCc----eEEe-cHHHHHhCCCcCCceEEEEeccCCHHHhhhhc----------ccchH----HHHHH
Confidence 22 22233321 0000 0000 00000001 11111000000000 00000 00000
Q ss_pred ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-e
Q 002165 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (957)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-k 329 (957)
......-..++.+++..+.. .++++|||+...++++.+++.|.. .+..+..+||+++.++|..+++.|+++. .
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~----~~~~~lV~~~~~~h~~~L~~~L~~--~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAK----KGENTFVMFKYVEHGKPLYEMLKK--VYDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred HhccHHHHHHHHHHHHHHHh----cCCCEEEEEEEHHHHHHHHHHHHH--cCCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 00111223344444444432 245789999999999999999985 4578999999999999999999998887 8
Q ss_pred EEEEc-cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCe
Q 002165 330 VILAT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 393 (957)
Q Consensus 330 VlVaT-niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~ 393 (957)
||||| +++++|+|+|+++.||. ++|+. |+..+.||+||+||..+|+
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl--------~~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIF--------AHPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEEcceeccccccccccEEEE--------ecCCc----------chhhhhhhhhccccCCCCC
Confidence 99998 89999999999999997 66665 4455699999999997765
No 68
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=9.3e-26 Score=243.47 Aligned_cols=306 Identities=19% Similarity=0.203 Sum_probs=210.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CC-------CcEEEeccHHHHHHHHHHHHHhhc---C
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM-------EPILCTQPRRFAVVAVAKMVAKGR---N 93 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~-------~~Iivt~Prrlaa~~va~rva~e~---~ 93 (957)
.+-+|+.+|+.+++|++++..|.||||||.++..++++. .. ..-++..|++.+|+|+.+.+.+.. .
T Consensus 42 pTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 42 PTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred cchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999996555554432 11 135566677777888877664421 1
Q ss_pred CccC-CeeEEeeec---ccccCCCCcEEEEcHHHHHHHHHccC-CCcCcceEEEEcccccccccccHHHHHHHHHHhcCC
Q 002165 94 CELG-GEVGYHIGH---SKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (957)
Q Consensus 94 ~~lg-~~Vgy~v~~---~~~~~~~t~Ivv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~ 168 (957)
..+- ..+.-.+.. ...+.+.++|+|+||+.+++.+..+. ..+..++++|+|||| -.+..++-..+.+.....++
T Consensus 122 k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr 200 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPR 200 (569)
T ss_pred HhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCCc
Confidence 0000 001101011 12235678999999999999999876 334489999999999 45555555555555556677
Q ss_pred CceEEEecccC--ChHHHHHHHhhcCCCceeEEEEecCCC-----ccceeeeeeehHHHHHHHhccCCCCcccccccccc
Q 002165 169 DLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTN-----QRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (957)
Q Consensus 169 ~lklIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~~~~~-----~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~ 241 (957)
..|-++||||+ |...+...|-. .|+- +...... +-..|.+.
T Consensus 201 ~~Q~~LmSATl~dDv~~LKkL~l~----nPvi-Lkl~e~el~~~dqL~Qy~v~--------------------------- 248 (569)
T KOG0346|consen 201 IYQCFLMSATLSDDVQALKKLFLH----NPVI-LKLTEGELPNPDQLTQYQVK--------------------------- 248 (569)
T ss_pred hhhheeehhhhhhHHHHHHHHhcc----CCeE-EEeccccCCCcccceEEEEE---------------------------
Confidence 88999999998 55667777643 2222 2222111 00111111
Q ss_pred CCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHH
Q 002165 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM 321 (957)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~ 321 (957)
.. ..+..-++.. +..+. -..|++|||+|+.+.+..+.-.|... ++....+.|.||..-|..++
T Consensus 249 ---------cs-e~DKflllya-llKL~----LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii 311 (569)
T KOG0346|consen 249 ---------CS-EEDKFLLLYA-LLKLR----LIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHII 311 (569)
T ss_pred ---------ec-cchhHHHHHH-HHHHH----HhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHH
Confidence 00 1111111111 11111 12579999999999999998888743 47778899999999999999
Q ss_pred hcccCCc-eEEEEccc-----------------------------------cccCccCCCeeEEEeCCcceeeeecCCCC
Q 002165 322 KICKSHR-KVILATNI-----------------------------------AESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (957)
Q Consensus 322 ~~f~~~r-kVlVaTni-----------------------------------ae~GIdIp~V~~VId~G~~k~~~yd~~~~ 365 (957)
+.|..|- .||||||. +.+|||+..|..||| ||.|..
T Consensus 312 ~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P~t 383 (569)
T KOG0346|consen 312 EQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFPET 383 (569)
T ss_pred HHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCCCc
Confidence 9999988 99999991 248999999999999 999998
Q ss_pred ccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 366 IDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 366 ~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+.+| +||+||++|. .+|.+..++.+.
T Consensus 384 ~~sY----------IHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 384 VTSY----------IHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hHHH----------HHhccccccCCCCCceEEEecch
Confidence 7777 9999999999 789999988764
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=2e-24 Score=244.75 Aligned_cols=312 Identities=15% Similarity=0.146 Sum_probs=176.3
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC-------CccCCeeE
Q 002165 31 LREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-------CELGGEVG 101 (957)
Q Consensus 31 ~Q~~il~~l~~~~--~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~-------~~lg~~Vg 101 (957)
+|.++++++.+++ +++|+||||||||......++.... +.+++.|.+.++.+.++++..... ..++...|
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~-~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGEN-DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCC-CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 5899999998776 4899999999999776666665443 556677888888887777666542 11111111
Q ss_pred Eeee----c----------c--------cccCCCCcEEEEcHHHHHHHHHc----cC-C---CcCcceEEEEcccccccc
Q 002165 102 YHIG----H----------S--------KHLSERSKIVFKTAGVLLDEMRD----RG-L---NALKYKVIILDEVHERSV 151 (957)
Q Consensus 102 y~v~----~----------~--------~~~~~~t~Ivv~T~g~Ll~~l~~----~~-l---~l~~~~~VIIDEaHER~~ 151 (957)
.... . + ......+.|+++||++|...+.. .. . .+.++++|||||+|+.+.
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1000 0 0 00023567888889999765542 11 0 134899999999997654
Q ss_pred ccc-HHH---HHHHHHHhcCCCceEEEecccCChHHHHHHHhhcC-CCceeEEEEecCCCccceeeeeeehHHHHHHHhc
Q 002165 152 ESD-LVL---VCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG-RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG 226 (957)
Q Consensus 152 ~~d-~ll---~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~-~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~ 226 (957)
... .++ .....+.......++|+||||++.. +.+.+...+ .+ .++..+++.. ..++- .++......
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~--~~~~~v~g~~--~~~~~----~~~~~~~~~ 230 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAG--VKIAPIDGEK--YQFPD----NPELEADNK 230 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccC--ceeeeecCcc--cccCC----Chhhhcccc
Confidence 332 222 2233222223357999999999864 334443321 11 2222233320 00000 000000000
Q ss_pred -cCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEE
Q 002165 227 -VDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKV 305 (957)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v 305 (957)
.............+.. .. .........+.+.+.+..... .++++|||+++++.++.++..|+....++.+
T Consensus 231 ~~~~~~~~~~i~~~~~~--~~-----~~~~~~l~~l~~~i~~~~~~~--~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP--AP-----DFKEEELSELAEEVIERFRQL--PGERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred ccccceeccceEEEEEe--CC-----chhHHHHHHHHHHHHHHHhcc--CCCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 0000000000000000 00 001111111112222222111 2468999999999999999999865445788
Q ss_pred EEecCCCCHHHHHHHHhcccCCceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 306 HILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 306 ~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
..+||.+++.+|.++. ..+|||||+++|+|||||++ +|| ++ +. +..+|+||+||
T Consensus 302 ~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi---------~~-p~----------~~~~yiqR~GR 355 (357)
T TIGR03158 302 GRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDFKRD-WLI---------FS-AR----------DAAAFWQRLGR 355 (357)
T ss_pred EeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCCCCc-eEE---------EC-CC----------CHHHHhhhccc
Confidence 8999999999887543 23899999999999999987 555 33 22 44567999999
Q ss_pred CC
Q 002165 386 TG 387 (957)
Q Consensus 386 AG 387 (957)
+|
T Consensus 356 ~g 357 (357)
T TIGR03158 356 LG 357 (357)
T ss_pred CC
Confidence 98
No 70
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=266.03 Aligned_cols=314 Identities=19% Similarity=0.260 Sum_probs=221.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH--HHHHHhc-------CCC-cEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l--p~~lle~-------~~~-~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
+.+++|.++|++|+.+++||.+|.||||||..+ |.+.... +.+ .-+++.|+|-+|+|+-+.+...... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL-L 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-c
Confidence 788999999999999999999999999999555 4442221 112 2456667777788887777654432 3
Q ss_pred CCeeEEeeec---c---cccCCCCcEEEEcHHHHHHHHHccCC---CcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 97 GGEVGYHIGH---S---KHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 97 g~~Vgy~v~~---~---~~~~~~t~Ivv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
|..+--..+. . ..+...+.|+|||||+.+..+....- .+.++..+|+|||| |+++..|.....+.+...+
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLR 544 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcc
Confidence 3322211111 1 22345699999999999998764322 23367799999999 9998888888888777789
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
++.|.+++|||.+.. +...-..... .|++++- .+. . .+.-+ + ...
T Consensus 545 pdrQtvlfSatfpr~-m~~la~~vl~-~Pveiiv-~~~--s-vV~k~------V-----------------------~q~ 589 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRS-MEALARKVLK-KPVEIIV-GGR--S-VVCKE------V-----------------------TQV 589 (997)
T ss_pred hhhhhhhhhhhhhHH-HHHHHHHhhc-CCeeEEE-ccc--e-eEecc------c-----------------------eEE
Confidence 999999999997655 3322222111 3444221 110 0 00000 0 000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~ 327 (957)
.....+..+.+. +++.-+..... .+++||||...+.+..+.+.|. ..++....+||+.++.+|..++..|+++
T Consensus 590 v~V~~~e~eKf~---kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~--~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 590 VRVCAIENEKFL---KLLELLGERYE--DGKTIIFVDKQEKADALLRDLQ--KAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred EEEecCchHHHH---HHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHH--hcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 011111122222 23322332222 4699999999999999999998 4567777799999999999999999999
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
. +++|||+++++|+|+.++..||+ ||.+.....| .||+||+||+ +.|.||.+.++++
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edy----------vhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDY----------VHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred CceEEEehhhhhcccccccceEEEE--------cccchhHHHH----------HHHhcccccCCccceeEEEeChHH
Confidence 9 99999999999999999999999 9999988776 9999999999 6799999998843
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=2.2e-24 Score=269.48 Aligned_cols=356 Identities=20% Similarity=0.255 Sum_probs=220.4
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 21 ~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.....+..+++|.+++..+.++ +++|++|||+|||.+....+. ....++++++.|++.++.+.++.+...++.. +
T Consensus 9 ~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~ 86 (773)
T PRK13766 9 IKPNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-E 86 (773)
T ss_pred cCcCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-C
Confidence 3345678899999999988776 899999999999975444433 2334688999999999999888887766542 1
Q ss_pred CeeEEeeeccc-----ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 98 GEVGYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 98 ~~Vgy~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
..++...+... ....+.+|+|+||+++...+..+.+.+.++++||||||| |.........+++.+....+..++
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEE
Confidence 12221111111 113467899999999998887777667799999999999 555443334445555555667789
Q ss_pred EEecccC--ChHHHHHHHhhcCCCceeEEEEecCCC-ccceeeeeee-------------------hHHHHHHH---hcc
Q 002165 173 VLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTN-QRTIFQRRVS-------------------YLEQVTEL---LGV 227 (957)
Q Consensus 173 IlmSATl--d~~~~~~~f~~~~~~~~v~v~~~~~~~-~~~~~~v~v~-------------------yl~~~~~~---l~~ 227 (957)
++||||+ +.+.+......++.. .+.+....... .....+..+. +++...+. .+.
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~-~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIE-HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCce-EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999997 444555555543211 11110000000 0000000000 00000000 000
Q ss_pred CCCCc----ccc-------c--------------------------------------cccccC-----C--CCCCc---
Q 002165 228 DHGMT----SEL-------S--------------------------------------SLRYCS-----G--PSPSM--- 248 (957)
Q Consensus 228 ~~~~~----~~~-------~--------------------------------------~~~~~~-----~--~~~~~--- 248 (957)
..... ... . ...|.. . .....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00000 000 0 000000 0 00000
Q ss_pred ---cc------------ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCC--
Q 002165 249 ---AN------------AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS-- 311 (957)
Q Consensus 249 ---~~------------~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~-- 311 (957)
.+ ........+.+.+++..+.... .++++|||+++++.++.+.+.|.. .++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~--~~~kvlIF~~~~~t~~~L~~~L~~--~~~~~~~~~g~~~ 400 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKN--PDSRIIVFTQYRDTAEKIVDLLEK--EGIKAVRFVGQAS 400 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHh--CCCceEEEEcccc
Confidence 00 0000011222333443433222 257999999999999999999963 44667777765
Q ss_pred ------CCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcC
Q 002165 312 ------VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (957)
Q Consensus 312 ------l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (957)
+++.+|..+++.|+.+. +|+|||+++++|+|+|++++||+ ||++.... .+.||+|
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~s~~----------r~iQR~G 462 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVPSEI----------RSIQRKG 462 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHhc
Confidence 99999999999999888 99999999999999999999999 99876444 4599999
Q ss_pred CCCCCCCCeEEEeechhh
Q 002165 385 RTGRTCDGQVYRLVTKSF 402 (957)
Q Consensus 385 RAGR~~~G~~~~L~s~~~ 402 (957)
|+||.++|.+|.|+++..
T Consensus 463 R~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 463 RTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred ccCcCCCCEEEEEEeCCC
Confidence 999999999999988643
No 72
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.8e-25 Score=247.47 Aligned_cols=314 Identities=18% Similarity=0.216 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC----------CcEEEeccHHHHHHHHHHHHHhhcC-CccC
Q 002165 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----------EPILCTQPRRFAVVAVAKMVAKGRN-CELG 97 (957)
Q Consensus 29 ~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~----------~~Iivt~Prrlaa~~va~rva~e~~-~~lg 97 (957)
.+.|.++++.+..+++++.|||||||||+.+...++.... -..+|+.|.|.+|.++.....+.-- ..-+
T Consensus 160 t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 4678899999999999999999999999665555543311 1467777888888777776544320 1111
Q ss_pred -CeeE--Eee----ecccccCCCCcEEEEcHHHHHHHHHccC--CCcCcceEEEEcccccccccc-cHHHHHHHHHHhc-
Q 002165 98 -GEVG--YHI----GHSKHLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVES-DLVLVCVKQLLLK- 166 (957)
Q Consensus 98 -~~Vg--y~v----~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~--l~l~~~~~VIIDEaHER~~~~-d~ll~~lk~l~~~- 166 (957)
...+ |.. ..........+|++.||-.+...+..+. +.+..+.++|+||++ +.++. .|...+...+...
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 0011 110 0111123467999999999999888764 456699999999999 77776 5555555544433
Q ss_pred CCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCC
Q 002165 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (957)
Q Consensus 167 ~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (957)
.+++++-++|||++. ..++|...... ..+.++ +...+ . -.+.+.+.+ .|+..
T Consensus 319 s~~i~~a~FSat~~~-~VEE~~~~i~~-~~~~vi-vg~~~--s-------a~~~V~Qel-------------vF~gs--- 370 (593)
T KOG0344|consen 319 SPDIRVALFSATISV-YVEEWAELIKS-DLKRVI-VGLRN--S-------ANETVDQEL-------------VFCGS--- 370 (593)
T ss_pred CcchhhhhhhccccH-HHHHHHHHhhc-cceeEE-Eecch--h-------Hhhhhhhhh-------------eeeec---
Confidence 478999999999753 34555543211 111111 10000 0 000000000 01100
Q ss_pred CcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC
Q 002165 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (957)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~ 326 (957)
.....-.+..++ .... ..++|||+.+.+.+.++...|. ...++.|..+||..++.+|...++.|+.
T Consensus 371 -------e~~K~lA~rq~v---~~g~---~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 371 -------EKGKLLALRQLV---ASGF---KPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred -------chhHHHHHHHHH---hccC---CCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhc
Confidence 000011111222 2222 3589999999999999999984 2567889999999999999999999999
Q ss_pred Cc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 327 ~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
|. .|++||+++++|||+-||+.||+ ||.+. |..+|+||+||+||. +.|++|.+|++++.
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~----------s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQ----------SDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEe--------cCCCc----------hhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 99 99999999999999999999999 99988 445669999999999 67999999998544
No 73
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=246.36 Aligned_cols=347 Identities=17% Similarity=0.214 Sum_probs=237.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHH----HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKS----SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKT----t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
+-+.++|..++..+.+++.|+|+|-|.+||| +++.+.+.+ .++||+|.|-..+..|-++.+..|++ .||
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~-----DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK-----DVG 200 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-----ccc
Confidence 5578999999999999999999999999999 555555544 35899999988888888888877765 255
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC-C
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-D 180 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl-d 180 (957)
.. .++-..++++..+|||+++|..++..+.--+..+.+||+||+| .+-+.+-...+...++..+.++|.|++|||+ |
T Consensus 201 LM-TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 201 LM-TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred ee-ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccCCC
Confidence 54 4455568899999999999999998776556699999999999 3333333322333344457789999999996 8
Q ss_pred hHHHHHHHhhcCCCceeEEEEecCC---Cccceeeee---ee--------hHHH----HHHHhccCCCCccc-ccccccc
Q 002165 181 ITKYRDYFRDLGRGERVEVLAIPST---NQRTIFQRR---VS--------YLEQ----VTELLGVDHGMTSE-LSSLRYC 241 (957)
Q Consensus 181 ~~~~~~~f~~~~~~~~v~v~~~~~~---~~~~~~~v~---v~--------yl~~----~~~~l~~~~~~~~~-~~~~~~~ 241 (957)
+..|++|...+.. .|+.|++..-+ -+...||.- ++ |-++ ....+....+.... ....+..
T Consensus 279 A~qFAeWI~~ihk-QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 279 ARQFAEWICHIHK-QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred HHHHHHHHHHHhc-CCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 9999999987643 35556654433 333445421 11 1111 00111000000000 0000000
Q ss_pred CCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC---------------------
Q 002165 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS--------------------- 300 (957)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~--------------------- 300 (957)
.+.. ........+ +.+++..|.... ..+++||.-++++||..+-.+..+.
T Consensus 358 kG~~--~~~~~~~s~----i~kiVkmi~~~~---~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 358 KGGT--GGKGPGDSD----IYKIVKMIMERN---YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred cCCc--CCCCCCccc----HHHHHHHHHhhc---CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 0000 000011112 234555555443 4599999999999998887765211
Q ss_pred ----C------------CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCC
Q 002165 301 ----S------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVN 363 (957)
Q Consensus 301 ----~------------~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~ 363 (957)
. .-.|..+||||-+--++.++-.|..|- ||++||.+.+.|+|+|.-++|.- ..
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----------~~ 498 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----------AV 498 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----------ec
Confidence 0 124778999999988888888899998 99999999999999998887762 23
Q ss_pred CCccccceeecCHHhHHHhcCCCCCC---CCCeEEEeechh
Q 002165 364 RKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (957)
Q Consensus 364 ~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s~~ 401 (957)
++.+.-...|||..+|+||+|||||. ..|+|+.++++.
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 34444567899999999999999998 469999999864
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=232.30 Aligned_cols=311 Identities=20% Similarity=0.284 Sum_probs=222.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-C----CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-M----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-~----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+.+|+.++..+.+|.++++.+.+|+|||..+...++... . ..+++..|+|.+|++.. .+...+|...+..|.-
T Consensus 49 PSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~-~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 49 PSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQ-KVVRALGDHMDVSVHA 127 (397)
T ss_pred chHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHH-HHHHhhhcccceeeee
Confidence 4578888888888999999999999999966665555442 1 24677778888888877 3444444333332322
Q ss_pred eeecc------cc-cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 103 HIGHS------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 103 ~v~~~------~~-~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.+++. .. .....+|+++|||+.+..+....+....+.++|+||++| ++..+|...+-......+++.|++++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~ 206 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLL 206 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheee
Confidence 22221 12 234589999999999999987766556899999999996 56667887777777778899999999
Q ss_pred cccCChHHH--HHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 176 SATADITKY--RDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 176 SATld~~~~--~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
|||++.+.+ .+-|.. +++.+..-... ...--.+.+|+ ...
T Consensus 207 SAT~p~~vl~vt~~f~~----~pv~i~vkk~~--ltl~gikq~~i-----------------------~v~--------- 248 (397)
T KOG0327|consen 207 SATMPSDVLEVTKKFMR----EPVRILVKKDE--LTLEGIKQFYI-----------------------NVE--------- 248 (397)
T ss_pred cccCcHHHHHHHHHhcc----CceEEEecchh--hhhhheeeeee-----------------------ecc---------
Confidence 999876543 333322 22222111000 00000000010 000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
.++.. ..+..++.. -...+||++|++.+..+...|. ..++.+..+|+.|.+.+|..+++.|+.|. +|+|
T Consensus 249 k~~k~----~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~--~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 249 KEEKL----DTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLR--AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred ccccc----cHHHHHHHh----hhcceEEecchhhHHHHHHHHh--hCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 00011 233333331 2478999999999999999996 56689999999999999999999999998 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhhc
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~l 406 (957)
.|+.+++|+|+-.+..||+ ||.|.+.+.| .||+||+||. ++|.++.++++++...+
T Consensus 319 ttdl~argidv~~~slvin--------ydlP~~~~~y----------ihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVN--------YDLPARKENY----------IHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred eccccccccchhhcceeee--------eccccchhhh----------hhhcccccccCCCceeeeeehHhhHHHH
Confidence 9999999999999999999 9999877666 9999999999 78999999998766544
No 75
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=3.2e-23 Score=240.75 Aligned_cols=351 Identities=16% Similarity=0.196 Sum_probs=227.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH--HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l--p~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+-+..+|++++.++..+..|+|.|+|.+|||... ...+......+.++|.|-..+..|-.+.+.+.+| + || .
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~----D-vg-L 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG----D-VG-L 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc----c-cc-e
Confidence 4567899999999999999999999999999433 3334455667899999977776666666666444 2 45 4
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC-ChH
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl-d~~ 182 (957)
+.++-+..+.+.+++||+++|..++.++.--..++.+||+||+| ..-|.+-...+...++..++.+++|++|||+ |..
T Consensus 370 lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 370 LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFILLSATVPNTL 448 (1248)
T ss_pred eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-ecccccccccceeeeeeccccceEEEEeccCCChH
Confidence 46677788999999999999999998765445699999999999 2222222222334455668889999999995 899
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCc---cc------eeee---eeehHHH----HHHHhcc-CCCCccc-----------
Q 002165 183 KYRDYFRDLGRGERVEVLAIPSTNQ---RT------IFQR---RVSYLEQ----VTELLGV-DHGMTSE----------- 234 (957)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~~~~~~---~~------~~~v---~v~yl~~----~~~~l~~-~~~~~~~----------- 234 (957)
.|++|.+.... ...-|+..+.++. .. .+++ .-.++.. ..+.++. ......+
T Consensus 449 EFA~WIGRtK~-K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~ 527 (1248)
T KOG0947|consen 449 EFADWIGRTKQ-KTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQ 527 (1248)
T ss_pred HHHHHhhhccC-ceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccccc
Confidence 99999987532 2233332222111 01 1110 0001110 0111100 0000000
Q ss_pred --cccccccCCCCCCcccccCChhH--HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC----------
Q 002165 235 --LSSLRYCSGPSPSMANAEIKPEV--HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS---------- 300 (957)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~--~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~---------- 300 (957)
-....+..+. +... .....- ...+.+++.++....- -+++|||-+++.|++.++.|....
T Consensus 528 ~~ggk~~~~~g~-~r~~--~~~~nrr~~~~~l~lin~L~k~~l---LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 528 KRGGKTNYHNGG-SRGS--GIGKNRRKQPTWLDLINHLRKKNL---LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccCCcCCCCCCC-cccc--cccccccccchHHHHHHHHhhccc---CceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 0000000000 0000 000000 1234466666665442 489999999999999888875210
Q ss_pred ---------------C------------CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeC
Q 002165 301 ---------------S------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 301 ---------------~------------~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~ 352 (957)
. .-.+..+|||+-+--+.-++-.|..|- ||++||.+.++|||+|.-.+|+++
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 0 024788999999988888888998887 999999999999999999999873
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEEeech
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s~ 400 (957)
+.| .|. -....+...+|.||+|||||. ..|.++.+...
T Consensus 682 -l~K---hDG------~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 682 -LRK---HDG------NEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred -hhh---ccC------cceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 222 232 234456788999999999998 46999888764
No 76
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=5.6e-23 Score=243.83 Aligned_cols=418 Identities=17% Similarity=0.180 Sum_probs=249.7
Q ss_pred chHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhc---CC----------CcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE---NM----------EPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 28 i~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~---~~----------~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
+..+|.++..+.+.+ .++++|||||+|||-....-+++. +. -+|++..|...+++.+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 567899998886654 589999999999994444444332 11 1799999999998888776666543
Q ss_pred CccCCeeEEeeeccc---ccCCCCcEEEEcHHHHHHHHHcc--CCCcCcceEEEEcccccccc-cccHHHHHH----HHH
Q 002165 94 CELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSV-ESDLVLVCV----KQL 163 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~--~l~l~~~~~VIIDEaHER~~-~~d~ll~~l----k~l 163 (957)
.+|..|+-..+... ..-..|.|+++||+..--.-+.+ .-..+-|+++||||+|--.- ..-.+..+. ++.
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 56666665544322 22468999999998763222221 11223689999999992111 112333332 233
Q ss_pred HhcCCCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccC
Q 002165 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (957)
Q Consensus 164 ~~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (957)
.......+++++|||+ |-++...|+.... -.+++... ...+-++...|..
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~----~glf~fd~-------------------------syRpvPL~qq~Ig 519 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP----EGLFYFDS-------------------------SYRPVPLKQQYIG 519 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc----ccccccCc-------------------------ccCcCCccceEec
Confidence 3334578999999996 6677777664311 00111100 0011111111111
Q ss_pred CC--CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhc--------------CC-------
Q 002165 243 GP--SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK--------------PL------- 299 (957)
Q Consensus 243 ~~--~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~--------------~~------- 299 (957)
.. .+......+++..++. +.... +.++||||+.++++.-+.++.++ +.
T Consensus 520 i~ek~~~~~~qamNe~~yeK-------Vm~~a--gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eil 590 (1674)
T KOG0951|consen 520 ITEKKPLKRFQAMNEACYEK-------VLEHA--GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREIL 590 (1674)
T ss_pred cccCCchHHHHHHHHHHHHH-------HHHhC--CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhh
Confidence 11 0110111111222221 22222 24799999999999887777665 00
Q ss_pred --------------CCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCC
Q 002165 300 --------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (957)
Q Consensus 300 --------------~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (957)
.-.+.+..+|+||+..+|..+++.|+.|. +|+|+|..+++|+++|+-+++|- ...+||+..
T Consensus 591 rtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pek 666 (1674)
T KOG0951|consen 591 RTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEK 666 (1674)
T ss_pred hhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCccc
Confidence 01357889999999999999999999998 99999999999999999999984 334588877
Q ss_pred CccccceeecCHHhHHHhcCCCCCCC-----CCeEEEeechhhh-hhccCCCCC--chhcCCHHHHHHHHhhhhcccCCC
Q 002165 365 KIDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVTKSFF-GTLEDHECP--AILRLSLRLQVLLICCAESKAISD 436 (957)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~~-----~G~~~~L~s~~~~-~~l~~~~~P--EI~r~~L~~~iL~l~~~~~~~l~~ 436 (957)
+.- ..+|..+.+||.|||||.+ .|+.+.=+++-.| -++-..+.| +-.-+.|...+-.-..+|.+.+.+
T Consensus 667 g~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d 742 (1674)
T KOG0951|consen 667 GRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARD 742 (1674)
T ss_pred Ccc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHH
Confidence 642 3579999999999999983 4555444444322 232222222 211111211110000111111111
Q ss_pred hhHhhh------ccc-------------CCCC----HHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChH
Q 002165 437 PKVLLQ------KAL-------------DPPY----PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFD 492 (957)
Q Consensus 437 ~~~~l~------~~l-------------~pP~----~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~ 492 (957)
...++. ..+ |++. .+.+..|...|.+.|.|-.+...|.++.|++|++.+.+.+.-.
T Consensus 743 ~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~ 821 (1674)
T KOG0951|consen 743 AVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHG 821 (1674)
T ss_pred HHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecc
Confidence 111110 111 2221 2568899999999999977544577889999999999988543
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.1e-22 Score=242.70 Aligned_cols=325 Identities=17% Similarity=0.183 Sum_probs=197.0
Q ss_pred cCCCCchHHHHHHHHHHHcC---CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 23 FSSLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~---~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
+....+++||.+++..+..+ +..||+.|||+|||.+....+... .++++|+.|+..++.|..+.+.+......+ .
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~k~tLILvps~~Lv~QW~~ef~~~~~l~~~-~ 328 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS-Q 328 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-e
Confidence 34566899999999998743 368999999999997665554433 457888899999999998888775443322 2
Q ss_pred eEEeeeccc-ccCCCCcEEEEcHHHHHHHHHc--------cCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 100 VGYHIGHSK-HLSERSKIVFKTAGVLLDEMRD--------RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 100 Vgy~v~~~~-~~~~~t~Ivv~T~g~Ll~~l~~--------~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
++...+..+ .......|+|+|..++...... +.+....+++||+|||| +.... ..+.++..-...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lpA~-----~fr~il~~l~a~ 402 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVPAA-----MFRRVLTIVQAH 402 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-cccHH-----HHHHHHHhcCcC
Confidence 332222221 1223478999999988532111 11222378999999999 44332 223333222334
Q ss_pred eEEEecccCC--hHHHHHHHhhcCCCceeEEEEecCC---Cccceee-----eeeehHHHHHHHhccCCCCccccccccc
Q 002165 171 RVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPST---NQRTIFQ-----RRVSYLEQVTELLGVDHGMTSELSSLRY 240 (957)
Q Consensus 171 klIlmSATld--~~~~~~~f~~~~~~~~v~v~~~~~~---~~~~~~~-----v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (957)
..+++|||+. .+....++..+|.. +...+.. ..+.+-+ +.+...++....+
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~----vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y--------------- 463 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPK----LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY--------------- 463 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCe----eeecCHHHHHhCCccccceEEEEEecCCHHHHHHH---------------
Confidence 5799999972 12222222222210 1111100 0111111 1111111100000
Q ss_pred cCCC-CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 002165 241 CSGP-SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (957)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~ 319 (957)
.... ..........+.....+..++.. +. ..+.++|||+...+.++.+++.|. +..+||+++..+|..
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~-he---~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRF-HE---QRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHH-Hh---hcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHH
Confidence 0000 00000011222233333333322 22 124699999999999999988874 345899999999999
Q ss_pred HHhcccCC-c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCC-eE--
Q 002165 320 AMKICKSH-R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG-QV-- 394 (957)
Q Consensus 320 i~~~f~~~-r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G-~~-- 394 (957)
+++.|+.+ . ++||+|+++.+|||+|++++||. ++.+.+ |+.++.||.||++|.++| .+
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccccCCCCCcccc
Confidence 99999854 6 99999999999999999999998 776532 677889999999999643 33
Q ss_pred -----EEeechhh
Q 002165 395 -----YRLVTKSF 402 (957)
Q Consensus 395 -----~~L~s~~~ 402 (957)
|.|++++.
T Consensus 596 ~~A~fY~lVs~dT 608 (732)
T TIGR00603 596 YNAFFYSLVSKDT 608 (732)
T ss_pred ccceEEEEecCCc
Confidence 88887643
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=2.9e-23 Score=223.00 Aligned_cols=318 Identities=16% Similarity=0.169 Sum_probs=210.5
Q ss_pred hHHHHHHHHHH-HcCCeEEEEcCCCCcHH--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC---CeeEE
Q 002165 29 MSLREKIVEKV-LENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG---GEVGY 102 (957)
Q Consensus 29 ~~~Q~~il~~l-~~~~~vII~a~TGSGKT--t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg---~~Vgy 102 (957)
++.|++++..+ ..+++|.|+.|||+||| +|+|..+.+. .-||+.|--.+.......+.. +..+.. ....-
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g---ITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG---ITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC---eEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 35788888876 56789999999999999 7888776553 345555643333333332221 111111 10000
Q ss_pred e-----eecccccCCCCcEEEEcHHHHHHHHHcc----CCCcCcceEEEEcccccccc-cccHHHHHHH--HHHhcCCCc
Q 002165 103 H-----IGHSKHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERSV-ESDLVLVCVK--QLLLKKNDL 170 (957)
Q Consensus 103 ~-----v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~----~l~l~~~~~VIIDEaHER~~-~~d~ll~~lk--~l~~~~~~l 170 (957)
. +..-....+.++++|.||++.......+ ...-..++++|+||||.-+- .-||...+|+ .+..+.++.
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 0 0011233567899999998864332111 11112578999999997442 2244444433 234456888
Q ss_pred eEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 002165 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (957)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (957)
.-+.++||.+++.-.+.|..+.-..||.++..|.... ..+|-....+.+.
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~------NLFYD~~~K~~I~------------------------ 227 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD------NLFYDNHMKSFIT------------------------ 227 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh------hhhHHHHHHHHhh------------------------
Confidence 9999999999998888887766666777776665333 2333211111110
Q ss_pred ccCChhHHHHHHHHHHHHH-------hhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhc
Q 002165 251 AEIKPEVHKLIHDLVLHIH-------KNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (957)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~-------~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~ 323 (957)
+.+..+.+...+-. .+.....|.-||+|.|++++|+++..|. ..++....+|+||-..||.++.+.
T Consensus 228 -----D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~--~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 228 -----DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE--IAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred -----hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh--hcCcchHHHhcccccchhHHHHHH
Confidence 01111111111111 1112235788999999999999999998 566889999999999999999999
Q ss_pred ccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 324 f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+.++. -||+||+...+|||-|+|++||+ ||++.++..| .|-.|||||. .+..|-..|+++
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgY----------YQESGRAGRDGk~SyCRLYYsR~ 362 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGY----------YQESGRAGRDGKRSYCRLYYSRQ 362 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHH----------HHhccccccCCCccceeeeeccc
Confidence 87777 99999999999999999999999 9998866555 9999999999 567887778877
Q ss_pred hhhh
Q 002165 402 FFGT 405 (957)
Q Consensus 402 ~~~~ 405 (957)
+.+.
T Consensus 363 D~~~ 366 (641)
T KOG0352|consen 363 DKNA 366 (641)
T ss_pred chHH
Confidence 6654
No 79
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=226.59 Aligned_cols=310 Identities=22% Similarity=0.227 Sum_probs=215.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC------CcEEEeccHHHHHHHHHHHHHhhcCCccCC---
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAVVAVAKMVAKGRNCELGG--- 98 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~------~~Iivt~Prrlaa~~va~rva~e~~~~lg~--- 98 (957)
.+|+|.+.++.++++++++-.|-||||||..+...+++... -+-++..|+|-+|.++-+.+++ +|...+.
T Consensus 44 ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkd-lgrgt~lr~s 122 (529)
T KOG0337|consen 44 PTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKD-LGRGTKLRQS 122 (529)
T ss_pred CCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHH-hccccchhhh
Confidence 46889999999999999999999999999666655554321 1445555555556666665544 2221111
Q ss_pred -eeEEeeeccc---ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 99 -EVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 99 -~Vgy~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.+|+. ..++ ....+.+|+++|||+++.....-.+.+..+.+||+||++ |.+...|...+-+.+.....+.|.++
T Consensus 123 ~~~ggD-~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTll 200 (529)
T KOG0337|consen 123 LLVGGD-SIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLL 200 (529)
T ss_pred hhcccc-hHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEE
Confidence 23322 1222 246789999999999987765544667799999999999 99999888888777777788889999
Q ss_pred ecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
||||++......-- .|-..|+-|. +.. +. .+.+.+ ...+.....
T Consensus 201 fSatlp~~lv~fak--aGl~~p~lVR-ldv---------et----kise~l-----------k~~f~~~~~--------- 244 (529)
T KOG0337|consen 201 FSATLPRDLVDFAK--AGLVPPVLVR-LDV---------ET----KISELL-----------KVRFFRVRK--------- 244 (529)
T ss_pred EeccCchhhHHHHH--ccCCCCceEE-eeh---------hh----hcchhh-----------hhheeeecc---------
Confidence 99999755333222 2322333221 110 00 000000 000110000
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
.+.. ..+.++....-. ..+.+||+++...++.+...|+ ..++.+..++|.|+++.|......|+.++ .++|.
T Consensus 245 a~K~----aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~--~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvv 317 (529)
T KOG0337|consen 245 AEKE----AALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLR--DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVV 317 (529)
T ss_pred HHHH----HHHHHHHhcccc-ccceeEEecccchHHHHHHHHH--hcCCCccccccccChHhhhhccccccCCccceEEE
Confidence 0111 122222222211 3479999999999999999998 44577888999999999998899999999 99999
Q ss_pred ccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
|++|++|+|||...-||+ ||.+.....+ .||.||+.|. +.|..|.++...
T Consensus 318 TdvaaRG~diplldnvin--------yd~p~~~klF----------vhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVIN--------YDFPPDDKLF----------VHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred ehhhhccCCCcccccccc--------ccCCCCCceE----------EEEecchhhccccceEEEEEecc
Confidence 999999999999999999 9998887777 8999999988 489999998764
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-22 Score=245.45 Aligned_cols=349 Identities=15% Similarity=0.182 Sum_probs=235.2
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHH----HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKS----SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKT----t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
-...+.++|++++..|..+..|+|+|||||||| +++.+.+.. .+++++|.|-..+..|..+.+..++|.- ...
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~ 192 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADM 192 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-hhh
Confidence 447788999999999999999999999999999 344443333 3469999999999999999888877743 334
Q ss_pred eEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 100 Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
||.. ..+-..++++.++|||+++|..++..+...+.++.+||+||+| -.-+.+-....-..++.....+++|+||||+
T Consensus 193 vGL~-TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 193 VGLM-TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred ccce-ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-eccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 5654 3455568899999999999999998876666799999999999 4444444444445566667789999999996
Q ss_pred -ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHH--HHHHhccCCC----C---cccccccc----------
Q 002165 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQ--VTELLGVDHG----M---TSELSSLR---------- 239 (957)
Q Consensus 180 -d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~--~~~~l~~~~~----~---~~~~~~~~---------- 239 (957)
|++.|+.|+.... ..++.++..+.++.. .+.+|... +.+.+.-... . ........
T Consensus 271 ~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvP----L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 345 (1041)
T COG4581 271 PNAEEFAEWIQRVH-SQPIHVVSTEHRPVP----LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDG 345 (1041)
T ss_pred CCHHHHHHHHHhcc-CCCeEEEeecCCCCC----eEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcc
Confidence 9999999998643 445555555443322 22111111 0000000000 0 00000000
Q ss_pred ----ccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC----------------
Q 002165 240 ----YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL---------------- 299 (957)
Q Consensus 240 ----~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~---------------- 299 (957)
|+.........+... ....+++..+.... .-++++|+-++..|+..+..+...
T Consensus 346 ~~~~~a~~~~~~~~~~~~~----~~~~~iv~~l~~~~---~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 346 DVGRYARRTKALRGSAKGP----AGRPEIVNKLDKDN---LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred ccccccccccccCCccccc----ccchHHHhhhhhhc---CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 000000000000000 01123444444333 358999999999998877665410
Q ss_pred ----------CCCc-------------EEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcc
Q 002165 300 ----------SSFF-------------KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (957)
Q Consensus 300 ----------~~~~-------------~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~ 355 (957)
..++ .+..+|+||-+..+..++..|..|- ||++||.+.+.|+|+|.-++|+ +++.
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeE
Confidence 0001 2557899999999999999999887 9999999999999999877776 4554
Q ss_pred eeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEEeec
Q 002165 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVT 399 (957)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s 399 (957)
| ||. -...|+|..+|.|++|||||. ..|.++.+.+
T Consensus 498 K---~dG------~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 K---FDG------NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred E---ecC------CceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 4 552 246789999999999999998 4699988844
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.90 E-value=9.9e-23 Score=257.66 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=172.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
...+++|.++++.+..+++++++||||||||+.+...+ +.....+++++.|++.++.|+++++... +...+..+...
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l-~~~~~~~~~~~ 157 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF-GEKVGCGVKIL 157 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH-hhhcCceEEEE
Confidence 46799999999999999999999999999995322211 1222356888889999999998888653 33333333222
Q ss_pred eeccc-----------c-cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-----------ccHHHHHH
Q 002165 104 IGHSK-----------H-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCV 160 (957)
Q Consensus 104 v~~~~-----------~-~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-----------~d~ll~~l 160 (957)
.+... . .....+|+|+|||.|.+.+. .+...++++||||||| +.++ .+|....+
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHH
Confidence 21110 1 12468999999999998775 2344479999999999 5543 22311111
Q ss_pred HHHHhc-------------------------CCCceEEEecccCChHHHH-HHHhhcCCCceeEEEEecCCCccceeeee
Q 002165 161 KQLLLK-------------------------KNDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (957)
Q Consensus 161 k~l~~~-------------------------~~~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~ 214 (957)
..++.. ..+.+++++|||+++.... .+|..+. .+++ ... ....-.+.
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll---~~~v---~~~-~~~~rnI~ 307 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL---GFEV---GSP-VFYLRNIV 307 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc---eEEe---cCc-ccccCCce
Confidence 111100 1157899999999764332 2343210 0111 110 00000001
Q ss_pred eehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHH---HHH
Q 002165 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LEQ 291 (957)
Q Consensus 215 v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~---ie~ 291 (957)
..|+ ... ...+.+.+++ ... +..+||||++... ++.
T Consensus 308 ~~yi-------------------------------~~~---~k~~~L~~ll----~~l---~~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 308 DSYI-------------------------------VDE---DSVEKLVELV----KRL---GDGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred EEEE-------------------------------Ecc---cHHHHHHHHH----Hhc---CCCEEEEEecccChHHHHH
Confidence 0110 000 1111222222 222 2478999999776 999
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE----ccccccCccCCC-eeEEEeCCcceee
Q 002165 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQV 358 (957)
Q Consensus 292 l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa----Tniae~GIdIp~-V~~VId~G~~k~~ 358 (957)
+++.|.. .++.+..+||++ + ..++.|++|+ +|||| ||++++|||+|+ |+|||+.|.++.+
T Consensus 347 l~~~L~~--~gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 347 LAEYLED--LGINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred HHHHHHH--CCCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 9999984 468999999999 2 2348999999 99999 699999999999 8999995555533
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.89 E-value=7e-22 Score=240.40 Aligned_cols=323 Identities=17% Similarity=0.137 Sum_probs=201.2
Q ss_pred CCCCchHHHHHHHHHHHc---CCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~---~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
....+++.|.++++.+.+ ++++++.|+||||||..+...+.+. ..+.++++.|++.++.++.+++.+.++..+..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 345689999999999987 4789999999999996665544321 22468888899999999999998866643322
Q ss_pred eeEEeeec------ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHH----HHHHHHHhcCC
Q 002165 99 EVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL----VCVKQLLLKKN 168 (957)
Q Consensus 99 ~Vgy~v~~------~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll----~~lk~l~~~~~ 168 (957)
..|..-.. .+......+|+|+|++.+. ..+.++++|||||+|+-+...+-.. --+..+.....
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 22211000 1112356899999998764 2345899999999996443322100 01112223456
Q ss_pred CceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceee-eeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 169 ~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
+.++|++|||++.+.+.....+ ....+..+....+...| +++.-+.+ ... . .
T Consensus 294 ~~~~il~SATps~~s~~~~~~g-----~~~~~~l~~r~~~~~~p~v~~id~~~---~~~----------------~--~- 346 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQG-----RYRLLRLTKRAGGARLPEVEIIDMRE---LLR----------------G--E- 346 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhcc-----ceeEEEeccccccCCCCeEEEEechh---hhh----------------h--c-
Confidence 7899999999988877665432 13333333322111111 11111100 000 0 0
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCH-----------------------------------------
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY----------------------------------------- 286 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~----------------------------------------- 286 (957)
....+.....+.+.+.+ +.+.++|||+|.+
T Consensus 347 -~~~~ls~~l~~~i~~~l--------~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 347 -NGSFLSPPLLEAIKQRL--------ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred -ccCCCCHHHHHHHHHHH--------HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 00012222222222211 1134788887742
Q ss_pred -------------------HHHHHHHHHhcCCCCCcEEEEecCCCCH--HHHHHHHhcccCCc-eEEEEccccccCccCC
Q 002165 287 -------------------YALEQQWHLMKPLSSFFKVHILHSSVDT--EQALMAMKICKSHR-KVILATNIAESSVTIP 344 (957)
Q Consensus 287 -------------------~~ie~l~~~L~~~~~~~~v~~lhs~l~~--~er~~i~~~f~~~r-kVlVaTniae~GIdIp 344 (957)
..++.+.+.|....++..+..+|+++.. ++++.+++.|++++ +|||+|+++++|+|+|
T Consensus 418 ~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p 497 (679)
T PRK05580 418 EPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFP 497 (679)
T ss_pred CCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCC
Confidence 1345666666655567889999999864 56888999999988 9999999999999999
Q ss_pred CeeEEE--eCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEe
Q 002165 345 KVAYVI--DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (957)
Q Consensus 345 ~V~~VI--d~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L 397 (957)
+|+.|+ | .|.......|....-.-+.+.|++|||||. .+|.++..
T Consensus 498 ~v~lV~il~--------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 498 NVTLVGVLD--------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CcCEEEEEc--------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 999885 4 444444444433333346779999999996 78988843
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=7.7e-22 Score=242.66 Aligned_cols=324 Identities=19% Similarity=0.202 Sum_probs=208.5
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC----CcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~----~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
+....+|++|.++++.+.++++|||+.+||||||..+..+|+++.. .+-+++-|+..+|...++++.+... .+|.
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~-~~~~ 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS-DLPG 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH-hCCC
Confidence 3445599999999999999999999999999999766666666533 3567777888888888888776543 2332
Q ss_pred eeEEee--e---cccc---cCCCCcEEEEcHHHHHHHHHccC----CCcCcceEEEEccccc-ccccccHHHHHHHHHHh
Q 002165 99 EVGYHI--G---HSKH---LSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHE-RSVESDLVLVCVKQLLL 165 (957)
Q Consensus 99 ~Vgy~v--~---~~~~---~~~~t~Ivv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHE-R~~~~d~ll~~lk~l~~ 165 (957)
.|+..+ + .+.. ....++|++++|.||...+.... ..+.++++||+||+|- |+....-+..++|+++.
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~ 224 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLR 224 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHH
Confidence 232221 1 1111 35679999999999998655321 1123899999999995 44444334445555554
Q ss_pred c----CCCceEEEecccC-Ch-HHHHHHHhhcCCCceeEE-EEecCCCccceeeeeeehHHHHHHHhccCCCCccccccc
Q 002165 166 K----KNDLRVVLMSATA-DI-TKYRDYFRDLGRGERVEV-LAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL 238 (957)
Q Consensus 166 ~----~~~lklIlmSATl-d~-~~~~~~f~~~~~~~~v~v-~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~ 238 (957)
. ..++++|.+|||+ ++ +...++++.. .+. +.-.+.+.+..+ + +.+.+....
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~-----f~~~v~~~g~~~~~~~-~-~~~~p~~~~--------------- 282 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRD-----FEVPVDEDGSPRGLRY-F-VRREPPIRE--------------- 282 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCc-----ceeeccCCCCCCCceE-E-EEeCCcchh---------------
Confidence 3 3479999999997 44 4455565432 222 211221111111 0 000000000
Q ss_pred cccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHH----HhcCCC--CCcEEEEecCCC
Q 002165 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH----LMKPLS--SFFKVHILHSSV 312 (957)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~----~L~~~~--~~~~v~~lhs~l 312 (957)
.... +..........++.....+ +-++|+|+.+++.++.+.. .+.... ....+..++|++
T Consensus 283 ---------~~~~-~r~s~~~~~~~~~~~~~~~----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~ 348 (851)
T COG1205 283 ---------LAES-IRRSALAELATLAALLVRN----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGL 348 (851)
T ss_pred ---------hhhh-cccchHHHHHHHHHHHHHc----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccC
Confidence 0000 0011111112222222222 3489999999999998863 232222 124588899999
Q ss_pred CHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-
Q 002165 313 DTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC- 390 (957)
Q Consensus 313 ~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~- 390 (957)
..++|.+++..|+.++ .++++||.+|-||||.++..||..|++- .|..+++||+|||||..
T Consensus 349 ~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~-----------------~s~~~~~Q~~GRaGR~~~ 411 (851)
T COG1205 349 HREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG-----------------VSVLSFRQRAGRAGRRGQ 411 (851)
T ss_pred CHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----------------chHHHHHHhhhhccCCCC
Confidence 9999999999999999 9999999999999999999999855432 15567899999999995
Q ss_pred CCeEEEeech
Q 002165 391 DGQVYRLVTK 400 (957)
Q Consensus 391 ~G~~~~L~s~ 400 (957)
.+..+.++..
T Consensus 412 ~~l~~~v~~~ 421 (851)
T COG1205 412 ESLVLVVLRS 421 (851)
T ss_pred CceEEEEeCC
Confidence 6666655553
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.89 E-value=8.4e-22 Score=254.01 Aligned_cols=313 Identities=15% Similarity=0.186 Sum_probs=190.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHH--HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCc--cCCeeEE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCE--LGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt--~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~--lg~~Vgy 102 (957)
..+++|.++++.+..+++++++||||||||+ +++...+.....+++++.|++.++.|+++.+.... .. ++..+.+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~-~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFC-EKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHH-hhcCCceeEEE
Confidence 5789999999999999999999999999996 22222222223467888888888898888876532 12 2223333
Q ss_pred eeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-----------ccHHHHHHH
Q 002165 103 HIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCVK 161 (957)
Q Consensus 103 ~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-----------~d~ll~~lk 161 (957)
..+... ......+|+|+|||.|.+.+..- ...++++||||||| +.++ .+|...+..
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD-~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVD-AFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECce-eccccccccchhhhcCCChHHHHH
Confidence 222211 11345899999999998765532 11479999999999 4433 345433332
Q ss_pred ----HH---------------------Hhc-CCCce-EEEecccCCh-HHHHHHHhhcCCCceeEEEEecCCCccceeee
Q 002165 162 ----QL---------------------LLK-KNDLR-VVLMSATADI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (957)
Q Consensus 162 ----~l---------------------~~~-~~~lk-lIlmSATld~-~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v 213 (957)
.+ +.. ....+ ++++|||+.. .....+|... .. +.+... ....-.+
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~-----l~-f~v~~~-~~~lr~i 307 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL-----LG-FEVGSG-RSALRNI 307 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC-----eE-EEecCC-CCCCCCc
Confidence 11 011 22334 6779999875 3444555431 11 111111 0000001
Q ss_pred eeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHH---HH
Q 002165 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LE 290 (957)
Q Consensus 214 ~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~---ie 290 (957)
...|+. ........+.+++ ... +...||||++++. ++
T Consensus 308 ~~~yi~---------------------------------~~~~~k~~L~~ll----~~~---g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 308 VDVYLN---------------------------------PEKIIKEHVRELL----KKL---GKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred EEEEEE---------------------------------CCHHHHHHHHHHH----HhC---CCCeEEEEeccccchHHH
Confidence 111100 0011011122222 222 2478999999875 48
Q ss_pred HHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEc----cccccCccCCC-eeEEEeCCcceeeeecCCC
Q 002165 291 QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIPK-VAYVIDSCRSLQVFWDVNR 364 (957)
Q Consensus 291 ~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaT----niae~GIdIp~-V~~VId~G~~k~~~yd~~~ 364 (957)
.+++.|.. .++.+..+||+ |..+++.|+.|+ +||||| ++++||||+|+ |+|||+.|.+|.++
T Consensus 348 ~la~~L~~--~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~----- 415 (1638)
T PRK14701 348 EIEKYLLE--DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRF----- 415 (1638)
T ss_pred HHHHHHHH--CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCc-----
Confidence 89999984 57999999995 778899999999 999999 59999999999 99999955544221
Q ss_pred Cccccceee---cCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 365 KIDSAELVW---VSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 365 ~~~~l~~~~---iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
+++.+.... .....+.++.|||||. .++.++..+..+.
T Consensus 416 ~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 416 RVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred chhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 222221110 0023357788999998 4666664444443
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=3.6e-21 Score=229.63 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccccccCccCC---------Ce
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---------KV 346 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp---------~V 346 (957)
+.++||||++.+.++.+...|.. .++....+||.+...++..+..+++.+ +|+||||+|++|+||| ++
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~--~gi~~~~L~a~~~~~E~~ii~~ag~~g-~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLR--EGIPHNLLNAQNAAKEAQIIAEAGQKG-AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHH--CCCCEEEecCCChHHHHHHHHHcCCCC-eEEEEccccccccCCCCCccccccCCe
Confidence 46899999999999999999984 468889999999988887777766555 8999999999999999 99
Q ss_pred eEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 347 AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 347 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
.+||. |+++... .. .||+|||||. .+|.++.+++.++
T Consensus 501 ~vIit--------~~~ps~r----------id-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 501 AVIGT--------ERMENSR----------VD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEEe--------cCCCCcH----------HH-HHhhhcccCCCCceeEEEEEccch
Confidence 99998 8888632 22 8999999999 6899999988643
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=6e-21 Score=220.23 Aligned_cols=299 Identities=20% Similarity=0.255 Sum_probs=208.6
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
+.++..|++++..|..+ -+=+++|+.|||||......++ +.|. ...+..|++++|.|.+..+++.+. ++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~-Q~ALMAPTEILA~QH~~~~~~~l~-~~ 338 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY-QAALMAPTEILAEQHYESLRKWLE-PL 338 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-eeEEeccHHHHHHHHHHHHHHHhh-hc
Confidence 44789999999998754 1458999999999965555444 3343 677888999999999998888765 45
Q ss_pred CCeeEEeeecc----------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc
Q 002165 97 GGEVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (957)
Q Consensus 97 g~~Vgy~v~~~----------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~ 166 (957)
|..|++.++.. ...+...+|+|+|...+ .+...+.++.+|||||=| |- ...==..+..+
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQH-RF-----GV~QR~~L~~K 407 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQH-RF-----GVHQRLALREK 407 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccc-cc-----cHHHHHHHHHh
Confidence 66677665432 22356799999998654 344556799999999999 32 22112233344
Q ss_pred CC-CceEEEecccCChHHHH-HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCC
Q 002165 167 KN-DLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (957)
Q Consensus 167 ~~-~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (957)
.. ...+++||||+-+..++ ..|+++ ++..+...+.++. |+....+.
T Consensus 408 G~~~Ph~LvMTATPIPRTLAlt~fgDl------dvS~IdElP~GRk-pI~T~~i~------------------------- 455 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLALTAFGDL------DVSIIDELPPGRK-PITTVVIP------------------------- 455 (677)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHhccc------cchhhccCCCCCC-ceEEEEec-------------------------
Confidence 55 57899999997666555 555553 3333333333321 22222111
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHH--------HHHHHHHhcCCCCCcEEEEecCCCCHHH
Q 002165 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA--------LEQQWHLMKPLSSFFKVHILHSSVDTEQ 316 (957)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~--------ie~l~~~L~~~~~~~~v~~lhs~l~~~e 316 (957)
....+.+++.+.+.+ . .+.++-|.||-.++ ++.+++.|....+++.+..+||.|+.++
T Consensus 456 ------~~~~~~v~e~i~~ei---~-----~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 456 ------HERRPEVYERIREEI---A-----KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred ------cccHHHHHHHHHHHH---H-----cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHH
Confidence 011122333332222 1 14688999997654 4566777776667889999999999999
Q ss_pred HHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeE
Q 002165 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (957)
Q Consensus 317 r~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~ 394 (957)
++++++.|+++. +|+|||.+.|-|||+|+.++.|- +|+.+ + .-|+..|-.||.||. .++.|
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCCCcceEE
Confidence 999999999998 99999999999999999998775 55543 2 446669999999998 68999
Q ss_pred EEeech
Q 002165 395 YRLVTK 400 (957)
Q Consensus 395 ~~L~s~ 400 (957)
+.+|..
T Consensus 585 ~Ll~~~ 590 (677)
T COG1200 585 VLLYKP 590 (677)
T ss_pred EEEeCC
Confidence 999975
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.1e-20 Score=197.18 Aligned_cols=301 Identities=20% Similarity=0.276 Sum_probs=197.9
Q ss_pred chHHHHHHH----HHHHcCCeEEEEcCCCCcHH---HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC-CccCCe
Q 002165 28 VMSLREKIV----EKVLENRVTLIVGETGCGKS---SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGE 99 (957)
Q Consensus 28 i~~~Q~~il----~~l~~~~~vII~a~TGSGKT---t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~-~~lg~~ 99 (957)
+++.|+.+- +.+.+.++++|.|-||+||| ++.....++.| .+|.+..||--.+..++.|+.+-+. +.+.
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~I~-- 174 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCDID-- 174 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCCee--
Confidence 456666654 45567789999999999999 44455555554 4789999999999999999988654 3321
Q ss_pred eEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHH-HHHHHhcCCCceEEEeccc
Q 002165 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 100 Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~-lk~l~~~~~~lklIlmSAT 178 (957)
...+..+.. -.+.++|+|.-.|++.-. .++++||||+|---...|-.+.. ++.. +...--+|.||||
T Consensus 175 --~Lyg~S~~~-fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTAT 242 (441)
T COG4098 175 --LLYGDSDSY-FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTAT 242 (441)
T ss_pred --eEecCCchh-ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecC
Confidence 111222222 238999999999988544 67899999999655555654443 3332 3455678999999
Q ss_pred CChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeee-hHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~-yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
...+...+.... ....+.+|.+-.+...|+.-+ +.....+.+ ....+..
T Consensus 243 p~k~l~r~~~~g-----~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l-----------------------~r~kl~~-- 292 (441)
T COG4098 243 PTKKLERKILKG-----NLRILKLPARFHGKPLPVPKFVWIGNWNKKL-----------------------QRNKLPL-- 292 (441)
T ss_pred ChHHHHHHhhhC-----CeeEeecchhhcCCCCCCCceEEeccHHHHh-----------------------hhccCCH--
Confidence 875554444432 233344444322222222110 110000000 0001111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
++...|...... +.++|||+|+.+..++++..|+.......+...||.- ..|.+..+.|++|. ++|++|.|
T Consensus 293 -----kl~~~lekq~~~-~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTI 364 (441)
T COG4098 293 -----KLKRWLEKQRKT-GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTI 364 (441)
T ss_pred -----HHHHHHHHHHhc-CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeeh
Confidence 333333333322 4699999999999999999997666667788888763 45777788999999 99999999
Q ss_pred cccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEEe
Q 002165 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRL 397 (957)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L 397 (957)
+|+|+|+|+|+++|- +... ..+ |+++..|.+||+||. ..|.++-+
T Consensus 365 LERGVTfp~vdV~Vl---------gaeh--~vf-----TesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 365 LERGVTFPNVDVFVL---------GAEH--RVF-----TESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred hhcccccccceEEEe---------cCCc--ccc-----cHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999998873 3222 223 788899999999998 34776554
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.9e-21 Score=228.77 Aligned_cols=296 Identities=19% Similarity=0.163 Sum_probs=181.1
Q ss_pred EEEcCCCCcHHHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeee------cccccCCCCcE
Q 002165 46 LIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG------HSKHLSERSKI 116 (957)
Q Consensus 46 II~a~TGSGKTt~lp~~l---le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~------~~~~~~~~t~I 116 (957)
++.|+||||||..+...+ ++.+ +.++++.|+..++.++++++.+.++..+....|..-. +.+......+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999996654444 3333 4688888999999999999988665432211110000 01112346799
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHH----HHHHHHhcCCCceEEEecccCChHHHHHHHhhcC
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV----CVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG 192 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~----~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~ 192 (957)
+|+|+..+. ..+.++++|||||+|+-+...+-... -+..+.....+.++|++|||+..+.+......
T Consensus 80 VVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g-- 150 (505)
T TIGR00595 80 VIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQK-- 150 (505)
T ss_pred EECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcC--
Confidence 999998764 23458999999999964433221110 01222334568899999999988776665432
Q ss_pred CCceeEEEEecCCCccceee-eeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhh
Q 002165 193 RGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKN 271 (957)
Q Consensus 193 ~~~~v~v~~~~~~~~~~~~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~ 271 (957)
.......+....+...| +++.-+. .+ .....+.....+.+.+.+
T Consensus 151 ---~~~~~~l~~r~~~~~~p~v~vid~~-------------~~-------------~~~~~ls~~l~~~i~~~l------ 195 (505)
T TIGR00595 151 ---AYRLLVLTRRVSGRKPPEVKLIDMR-------------KE-------------PRQSFLSPELITAIEQTL------ 195 (505)
T ss_pred ---CeEEeechhhhcCCCCCeEEEEecc-------------cc-------------cccCCccHHHHHHHHHHH------
Confidence 12233332221111111 1111000 00 000112222222222222
Q ss_pred CCCCCCcEEEEeCCHHH------------------------------------------------------------HHH
Q 002165 272 ESDIEKSILVFLPTYYA------------------------------------------------------------LEQ 291 (957)
Q Consensus 272 ~~~~~g~iLVFl~~~~~------------------------------------------------------------ie~ 291 (957)
. .++++|||+|++.- ++.
T Consensus 196 -~-~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~ 273 (505)
T TIGR00595 196 -A-AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQ 273 (505)
T ss_pred -H-cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHH
Confidence 1 14589999876532 466
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHH--HHHHhcccCCc-eEEEEccccccCccCCCeeEEE--eCCcceeeeecCCCCc
Q 002165 292 QWHLMKPLSSFFKVHILHSSVDTEQA--LMAMKICKSHR-KVILATNIAESSVTIPKVAYVI--DSCRSLQVFWDVNRKI 366 (957)
Q Consensus 292 l~~~L~~~~~~~~v~~lhs~l~~~er--~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VI--d~G~~k~~~yd~~~~~ 366 (957)
+.+.|....++..+..+|++++..++ ..+++.|+++. +|||+|+++++|+|+|+|+.|+ | +|.....
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~ 345 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHS 345 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccC
Confidence 66777666667889999999887654 78899999988 9999999999999999999874 5 5544444
Q ss_pred cccceeecCHHhHHHhcCCCCCC-CCCeEEE
Q 002165 367 DSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (957)
Q Consensus 367 ~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~ 396 (957)
..++...-.-+.+.|++|||||. .+|.++.
T Consensus 346 pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 346 PDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred cccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 44333233446679999999997 6798873
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=1.5e-20 Score=230.48 Aligned_cols=318 Identities=16% Similarity=0.157 Sum_probs=178.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH---Hhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCccC-Cee
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELG-GEV 100 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l---le~-~~~~Iivt~Prrlaa~~va~rva~e~~~~lg-~~V 100 (957)
...+++|..+.+.......+||.||||+|||.....+. +.. +...|+++.|++..+.++.+|+........+ ..+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 45789999886554456789999999999995443332 222 3468999999999999999998752210000 112
Q ss_pred EEeeecc-------c--------------------c---cCC---CCcEEEEcHHHHHHHHH-ccCCCc----CcceEEE
Q 002165 101 GYHIGHS-------K--------------------H---LSE---RSKIVFKTAGVLLDEMR-DRGLNA----LKYKVII 142 (957)
Q Consensus 101 gy~v~~~-------~--------------------~---~~~---~t~Ivv~T~g~Ll~~l~-~~~l~l----~~~~~VI 142 (957)
+...+.. . . ..+ -..|+|+|...++.-.. .+...+ ..-++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 1111000 0 0 001 26899999877764332 211111 1456999
Q ss_pred Eccccccccccc-HHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHH
Q 002165 143 LDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQV 221 (957)
Q Consensus 143 IDEaHER~~~~d-~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~ 221 (957)
|||+|--...+. ++..+++.+.. ...++|+||||++.....++....+...++. . ...||.-.. ....
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~-----~---~~~YPlvt~-~~~~ 513 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVE-----L---SSAYPLITW-RGVN 513 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccc-----c---ccccccccc-cccc
Confidence 999995433322 33334444322 3567999999998776666655332111100 0 001111000 0000
Q ss_pred -HHHhccCCCCccccccccccCCCCCCccc---c--cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHH
Q 002165 222 -TELLGVDHGMTSELSSLRYCSGPSPSMAN---A--EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHL 295 (957)
Q Consensus 222 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~ 295 (957)
...+... ...+. .+...... . ........++..++..+. .++++|||+||++.++.+++.
T Consensus 514 ~~~~~~~~--~~~~~-------~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~ 579 (878)
T PRK09694 514 GAQRFDLS--AHPEQ-------LPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQR 579 (878)
T ss_pred cceeeecc--ccccc-------cCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHH
Confidence 0000000 00000 00000000 0 000001112222222111 146899999999999999999
Q ss_pred hcCCC-CCcEEEEecCCCCHHHHH----HHHhcc-cCCc----eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCC
Q 002165 296 MKPLS-SFFKVHILHSSVDTEQAL----MAMKIC-KSHR----KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (957)
Q Consensus 296 L~~~~-~~~~v~~lhs~l~~~er~----~i~~~f-~~~r----kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~ 365 (957)
|+... ....+..+||.++..+|. ++++.| ++++ +|||||+++|+|||| +++++|. ...|
T Consensus 580 L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------dlaP-- 648 (878)
T PRK09694 580 LKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------QLCP-- 648 (878)
T ss_pred HHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------CCCC--
Confidence 98543 346799999999999884 455566 4432 799999999999999 5788884 2222
Q ss_pred ccccceeecCHHhHHHhcCCCCCC
Q 002165 366 IDSAELVWVSQSQAEQRRGRTGRT 389 (957)
Q Consensus 366 ~~~l~~~~iSkas~~QR~GRAGR~ 389 (957)
..+++||+||+||.
T Consensus 649 ----------idsLiQRaGR~~R~ 662 (878)
T PRK09694 649 ----------VDLLFQRLGRLHRH 662 (878)
T ss_pred ----------HHHHHHHHhccCCC
Confidence 24569999999997
No 90
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.86 E-value=2.2e-21 Score=236.86 Aligned_cols=313 Identities=16% Similarity=0.179 Sum_probs=211.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeee
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG 105 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~ 105 (957)
..+.|.++|.+++.|+++.|..|||.||| +|+|.++... .-+|+.|-..+.......+ ...+......-+-+..
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g---itvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q~~ 340 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG---VTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQTA 340 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC---ceEEeccHHHHHHHHHHhh-hhcCcceeeccccccH
Confidence 34679999999999999999999999999 8999988764 4566667555544333333 1122221111111100
Q ss_pred ------cccccC--CCCcEEEEcHHHHHHHHH--ccCCCcCc---ceEEEEcccccccccc-cHHHHHH--HHHHhcCCC
Q 002165 106 ------HSKHLS--ERSKIVFKTAGVLLDEMR--DRGLNALK---YKVIILDEVHERSVES-DLVLVCV--KQLLLKKND 169 (957)
Q Consensus 106 ------~~~~~~--~~t~Ivv~T~g~Ll~~l~--~~~l~l~~---~~~VIIDEaHER~~~~-d~ll~~l--k~l~~~~~~ 169 (957)
+..... ...+|+|.||+++...-. .....+.. +..+||||||.-+-.. ||...+. ..+..+.+.
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~ 420 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG 420 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC
Confidence 001112 367999999998875321 11111223 7899999999744332 5554443 334445677
Q ss_pred ceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 002165 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (957)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (957)
..+|.++||.....-.+....++-..+. ++.-...+.+..+.|... ..
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k-----------------------------~~-- 468 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPK-----------------------------TD-- 468 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEec-----------------------------cC--
Confidence 8999999999888777777766543322 211111111122222110 00
Q ss_pred cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-
Q 002165 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (957)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r- 328 (957)
.. ....+...+....+ .+.+||+|.++.+++.+...|+.. ++....+|+||+..+|..+.+.|-.+.
T Consensus 469 -----~~---~~~~~~~~~~~~~~--~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 469 -----KD---ALLDILEESKLRHP--DQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred -----cc---chHHHHHHhhhcCC--CCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 00 11122233333333 468999999999999999999854 478899999999999999999998777
Q ss_pred eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhhc
Q 002165 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (957)
Q Consensus 329 kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~l 406 (957)
+|||||=+.++|||-|||++||+ |..|..++.| .|-+|||||. .+-.|..+|+-+++..+
T Consensus 537 ~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~Y----------YQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 537 RVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGY----------YQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred eEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHH----------HHhccccCcCCCcceeEEecchhHHHHH
Confidence 99999999999999999999999 8888877766 9999999999 68999999998776543
No 91
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.6e-20 Score=219.99 Aligned_cols=103 Identities=24% Similarity=0.274 Sum_probs=85.9
Q ss_pred CcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCC---Cee-----
Q 002165 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVA----- 347 (957)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp---~V~----- 347 (957)
.++|||+++.+.++.++..|.. .++.+..+||.....++..+ .++++. +|+||||+|++|+||+ +|.
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~--~gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLRE--AGLPHQVLNAKQDAEEAAIV--ARAGQRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHH--CCCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 5799999999999999999984 56889999998765554444 444444 8999999999999999 776
Q ss_pred EEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+||+ ||.|.....+ .||+||+||. .+|.++.+++.+
T Consensus 550 hVI~--------~d~P~s~r~y----------~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 550 HVIL--------TERHDSARID----------RQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred EEEE--------cCCCCCHHHH----------HHhcccccCCCCCeEEEEEechh
Confidence 9999 8888755544 9999999999 689999998854
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=3.8e-20 Score=215.11 Aligned_cols=329 Identities=18% Similarity=0.159 Sum_probs=196.8
Q ss_pred ccCCCCchHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 22 EFSSLPVMSLREKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~----~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
......++++|+++++++.+ ++..+|+.|||+|||......+.+... .++|+.|++.++.|.+++.....+..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~-~~Lvlv~~~~L~~Qw~~~~~~~~~~~-- 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR-STLVLVPTKELLDQWAEALKKFLLLN-- 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC-CEEEEECcHHHHHHHHHHHHHhcCCc--
Confidence 34556799999999999988 889999999999999887777766554 48888999999999988877765543
Q ss_pred CeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce-EEEec
Q 002165 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR-VVLMS 176 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk-lIlmS 176 (957)
..+|..-+......+ ..|+|+|...+.+.-....+....+++||+||||+ .... .. +.+........ +++||
T Consensus 108 ~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh-~~a~-~~----~~~~~~~~~~~~~LGLT 180 (442)
T COG1061 108 DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH-LPAP-SY----RRILELLSAAYPRLGLT 180 (442)
T ss_pred cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc-CCcH-HH----HHHHHhhhcccceeeec
Confidence 223322122222222 67999999999886211112223799999999994 3322 22 22222223334 99999
Q ss_pred ccC---ChHHHHHHHhhcCCCceeEEEEecCC---Cccce-----eeeeeehHHHHHHHhccCCCCcccccccccc-CCC
Q 002165 177 ATA---DITKYRDYFRDLGRGERVEVLAIPST---NQRTI-----FQRRVSYLEQVTELLGVDHGMTSELSSLRYC-SGP 244 (957)
Q Consensus 177 ATl---d~~~~~~~f~~~~~~~~v~v~~~~~~---~~~~~-----~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~-~~~ 244 (957)
||+ |......++..+| + .+...+.. ..+.. +.+.+.+.++..................... ...
T Consensus 181 ATp~R~D~~~~~~l~~~~g-~---~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 181 ATPEREDGGRIGDLFDLIG-P---IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred cCceeecCCchhHHHHhcC-C---eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 995 3334555555433 0 11111100 00111 1111111111111000000000000000000 000
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcc
Q 002165 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (957)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f 324 (957)
.............. ..+..+..... .+.+++||+.....++.++..+.. ++. +..+.+..+..+|..+++.|
T Consensus 257 ~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 257 NEARRIAIASERKI----AAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred HHHHHHhhccHHHH----HHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcC--CCc-eEEEECCCCHHHHHHHHHHH
Confidence 00000000001111 11111111111 245899999999999999999874 334 77889999999999999999
Q ss_pred cCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC
Q 002165 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (957)
Q Consensus 325 ~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 390 (957)
+.+. ++|+++.++..|+|+|++.++|- -.+.. |+..+.||+||.-|..
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~--------~~~t~----------S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLII--------LRPTG----------SRRLFIQRLGRGLRPA 377 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEE--------eCCCC----------cHHHHHHHhhhhccCC
Confidence 9877 99999999999999999999996 33322 6677899999999963
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.9e-20 Score=225.54 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccccccCccC---CCee-----
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTI---PKVA----- 347 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GIdI---p~V~----- 347 (957)
+.++||||++.+.++.++..|.. .++.+..+||.+...++..+..+++.+ +|+||||+|++|+|| |+|.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~--~gi~~~~L~~~~~~~e~~~i~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDE--AGIPHNLLNAKNAAKEAQIIAEAGQKG-AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCEEEecCCccHHHHHHHHHcCCCC-eEEEEccchhcCcCCCcccccccccCc
Confidence 46899999999999999999984 468899999999988887777766544 899999999999999 7999
Q ss_pred EEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
+||+ ||.|..... +.||+|||||. .+|.++.+++.++
T Consensus 505 ~VI~--------~d~p~s~r~----------y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIG--------TERMESRRV----------DLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEe--------ccCCCCHHH----------HHHhhccccCCCCCeeEEEEEcchH
Confidence 9999 888875544 49999999999 5899999988643
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=3e-20 Score=225.24 Aligned_cols=297 Identities=17% Similarity=0.186 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHc----CC--eEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 29 MSLREKIVEKVLE----NR--VTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 29 ~~~Q~~il~~l~~----~~--~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
++=|..+|+.+.+ ++ +=+|||..|-|||-...... .-.+.+.|.++.|+.++|+|-.+.+.+.+. .++..|
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 4668888888763 33 56999999999995444433 334457899999999999999999887654 455566
Q ss_pred EEeeecccc----------cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 101 GYHIGHSKH----------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 101 gy~v~~~~~----------~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
+..-||... .....+|+|+|...| ++.+.+.+++++||||-|. |...--..+...+.++
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR------FGVk~KEkLK~Lr~~V 743 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR------FGVKHKEKLKELRANV 743 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh------cCccHHHHHHHHhccC
Confidence 655565432 256789999998654 4455677999999999993 3322233444557899
Q ss_pred eEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 002165 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (957)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (957)
.++-||||+-+..+.--..++ ....++..|. ..-+||+.+..+.
T Consensus 744 DvLTLSATPIPRTL~Msm~Gi---RdlSvI~TPP---~~R~pV~T~V~~~------------------------------ 787 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGI---RDLSVIATPP---EDRLPVKTFVSEY------------------------------ 787 (1139)
T ss_pred cEEEeeCCCCcchHHHHHhcc---hhhhhccCCC---CCCcceEEEEecC------------------------------
Confidence 999999998777776655543 1233443333 2345666553221
Q ss_pred ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-e
Q 002165 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (957)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-k 329 (957)
. ..++.+.+.. +-..+|++-...|..++|+++++.|+.+-+..+|...||.|+..+-+.++..|-+++ +
T Consensus 788 --d----~~~ireAI~R----El~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 788 --D----DLLIREAILR----ELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred --C----hHHHHHHHHH----HHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 0 0112222221 112368999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 330 VlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
|+|||.|.|+|||||+++.+|- .+ .+.+ .-|+..|-.||.||. ..|.||.||..
T Consensus 858 VLv~TTIIEtGIDIPnANTiII--------e~----AD~f-----GLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 858 VLVCTTIIETGIDIPNANTIII--------ER----ADKF-----GLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred EEEEeeeeecCcCCCCCceEEE--------ec----cccc-----cHHHHHHhccccCCccceEEEEEeecC
Confidence 9999999999999999998873 11 1222 335669999999999 78999999985
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.85 E-value=5.9e-20 Score=232.91 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC---e
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG---E 99 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~---~ 99 (957)
....+++|...++.+..+++++++||||||||+.+...+ +.....+++++.|++.+|.|+++.+..... ..|. .
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~-~~~i~~~~ 154 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAE-KAGVGTVN 154 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHH-hcCCceee
Confidence 356899999999999999999999999999996332221 112234688888999999999888765432 1121 1
Q ss_pred eEEeeecc----------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-----------ccHHHH
Q 002165 100 VGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLV 158 (957)
Q Consensus 100 Vgy~v~~~----------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-----------~d~ll~ 158 (957)
+|+..+.. .....+.+|+|+|||.|.+.+..- .. ++++||||||| +.++ .+|...
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e 230 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEE 230 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChH-hhhhccccHHHHHHHcCCCHH
Confidence 22221211 011345899999999998876541 12 79999999999 5554 222211
Q ss_pred HHHHH----------------------H-hcCCCc--eEEEecccCChHHHH-HHHhhcCCCceeEEEEecCCCccceee
Q 002165 159 CVKQL----------------------L-LKKNDL--RVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQ 212 (957)
Q Consensus 159 ~lk~l----------------------~-~~~~~l--klIlmSATld~~~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~ 212 (957)
.+..+ + ..+... .++++|||+.+.... .+|..+. .+++ ... ....-.
T Consensus 231 ~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll---~~~v---~~~-~~~~r~ 303 (1171)
T TIGR01054 231 LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL---GFEV---GGG-SDTLRN 303 (1171)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc---ceEe---cCc-cccccc
Confidence 11111 0 112222 367789995333222 3443210 0111 100 000000
Q ss_pred eeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCH---HHH
Q 002165 213 RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY---YAL 289 (957)
Q Consensus 213 v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~---~~i 289 (957)
+...|+ .... . .+.+.+++. .. ++.+|||+++. +.+
T Consensus 304 I~~~~~-------------------------------~~~~--~-~~~L~~ll~----~l---~~~~IVFv~t~~~~~~a 342 (1171)
T TIGR01054 304 VVDVYV-------------------------------EDED--L-KETLLEIVK----KL---GTGGIVYVSIDYGKEKA 342 (1171)
T ss_pred eEEEEE-------------------------------eccc--H-HHHHHHHHH----Hc---CCCEEEEEeccccHHHH
Confidence 111110 0000 0 111222222 21 24689999998 999
Q ss_pred HHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE----ccccccCccCCC-eeEEEeCCcceee
Q 002165 290 EQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQV 358 (957)
Q Consensus 290 e~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa----Tniae~GIdIp~-V~~VId~G~~k~~ 358 (957)
+.+++.|.. .++.+..+||+++. .+++.|++|+ +|||| ||++++|||||+ |+|||+.|.++.+
T Consensus 343 ~~l~~~L~~--~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 343 EEIAEFLEN--HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHHHh--CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999984 46899999999973 5789999999 99999 599999999999 8999998887754
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=3.4e-20 Score=220.00 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcccc
Q 002165 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA 337 (957)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTnia 337 (957)
..+.+.+...+.. +.++||||++.+.++.+...|.. .++....+|+. +.+|+..+..|+++. .|+||||+|
T Consensus 392 ~ai~~~i~~~~~~----grpvLV~t~si~~se~ls~~L~~--~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmA 463 (745)
T TIGR00963 392 KAVVDEIKERHAK----GQPVLVGTTSVEKSELLSNLLKE--RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMA 463 (745)
T ss_pred HHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHH--cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccc
Confidence 3344444444433 46999999999999999999984 45778899998 778888888899888 999999999
Q ss_pred ccCccCCC-------eeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 338 ESSVTIPK-------VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 338 e~GIdIp~-------V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
++|+||+. ..+||. |+.+.. ...+.||.||+||. .+|.+..+++.++
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~--------t~~p~s----------~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIG--------TERHES----------RRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred cCCcCCCccchhhcCCcEEEe--------cCCCCc----------HHHHHHHhccccCCCCCcceEEEEeccH
Confidence 99999998 459998 777764 44559999999999 6899988888643
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.82 E-value=1.2e-18 Score=219.67 Aligned_cols=348 Identities=18% Similarity=0.238 Sum_probs=196.6
Q ss_pred CCchHHHHHHHHHHH-----cCCeEEEEcCCCCcHHHHHHHH---HHhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 26 LPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF---LLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~-----~~~~vII~a~TGSGKTt~lp~~---lle~-~~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
+.++++|.++++++. .++..+|+++||||||..+... ++.. ..++|+++.+|..++.|..+.+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 567999999998775 2467999999999999443322 2333 3468999999999999988876553 1111
Q ss_pred CCeeE--Eee-ec-ccccCCCCcEEEEcHHHHHHHHHcc-----CCCcCcceEEEEcccccccccccH------------
Q 002165 97 GGEVG--YHI-GH-SKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDL------------ 155 (957)
Q Consensus 97 g~~Vg--y~v-~~-~~~~~~~t~Ivv~T~g~Ll~~l~~~-----~l~l~~~~~VIIDEaHER~~~~d~------------ 155 (957)
+..++ |.+ +. +.......+|+|+|.+.|.+.+... ...+..+++||||||| |+...|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 10000 111 11 1122446899999999988775421 1234589999999999 7753211
Q ss_pred --HHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCC-Ccccee----eeeeehHHHHHHHhccC
Q 002165 156 --VLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPST-NQRTIF----QRRVSYLEQVTELLGVD 228 (957)
Q Consensus 156 --ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~-~~~~~~----~v~v~yl~~~~~~l~~~ 228 (957)
...-.+.++.. .+..+|+||||+... -..+|+. ++........ ..+.+. |..+. .. ....++.
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-----pv~~Ysl~eAI~DG~Lv~~~~p~~i~--t~-~~~~gi~ 639 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-----PVYTYSYREAVIDGYLIDHEPPIRIE--TR-LSQEGIH 639 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-----eeEEeeHHHHHhcCCcccCcCCEEEE--EE-ecccccc
Confidence 02233445443 356789999998643 3455642 1211111000 001111 00000 00 0000000
Q ss_pred CCCcc--ccccc---cccCCCCCC---ccccc-----CChhHHHHHH-HHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHH
Q 002165 229 HGMTS--ELSSL---RYCSGPSPS---MANAE-----IKPEVHKLIH-DLVLHIHKNESDIEKSILVFLPTYYALEQQWH 294 (957)
Q Consensus 229 ~~~~~--~~~~~---~~~~~~~~~---~~~~~-----~~~~~~~li~-~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~ 294 (957)
..... +.... .......++ +.... +.+...+.+. +++.++.. .+++++||||.+.++++.+.+
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHHHHHHHHH
Confidence 00000 00000 000000000 00000 0111112222 23333321 224799999999999998888
Q ss_pred HhcCC-------CCCcEEEEecCCCCHHHHHHHHhcccCCc--eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCC
Q 002165 295 LMKPL-------SSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (957)
Q Consensus 295 ~L~~~-------~~~~~v~~lhs~l~~~er~~i~~~f~~~r--kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~ 365 (957)
.|... .....+..++|+.+ ++..+++.|+++. +|+|+++++.+|+|+|.|..||. +++..
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvk- 785 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVR- 785 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCC-
Confidence 77532 11224566888875 4566889998876 79999999999999999999996 66554
Q ss_pred ccccceeecCHHhHHHhcCCCCCCCC--Ce-EEEeech-hhhhhccC
Q 002165 366 IDSAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLVTK-SFFGTLED 408 (957)
Q Consensus 366 ~~~l~~~~iSkas~~QR~GRAGR~~~--G~-~~~L~s~-~~~~~l~~ 408 (957)
|+..|+||+||+.|..+ |+ .+.+++- ..++.+..
T Consensus 786 ---------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l~~ 823 (1123)
T PRK11448 786 ---------SRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEALES 823 (1123)
T ss_pred ---------CHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhccc
Confidence 66677999999999977 55 5666664 34444433
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=204.43 Aligned_cols=331 Identities=18% Similarity=0.228 Sum_probs=195.3
Q ss_pred CCchHHHHHHHH--HHHcCCeEEEEcCCCCcHHHHHHHHHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 26 LPVMSLREKIVE--KVLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 26 LPi~~~Q~~il~--~l~~~~~vII~a~TGSGKTt~lp~~lle~~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
+..+.+|.+.+. .++++++.|..+||+.|||...-..++... .+.++..-|-...++.-...+.. +.+.+|-.|
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G~~v 300 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccCCcc
Confidence 557788888875 477899999999999999965555444332 23444444544433333333322 122333222
Q ss_pred -EEeeeccc-ccCCCCcEEEEcHHHHHHH---HH-ccCCCcCcceEEEEcccccccccc---cHHHHHHHHHHhc--CCC
Q 002165 101 -GYHIGHSK-HLSERSKIVFKTAGVLLDE---MR-DRGLNALKYKVIILDEVHERSVES---DLVLVCVKQLLLK--KND 169 (957)
Q Consensus 101 -gy~v~~~~-~~~~~t~Ivv~T~g~Ll~~---l~-~~~l~l~~~~~VIIDEaHER~~~~---d~ll~~lk~l~~~--~~~ 169 (957)
+|.-++.. ...+...+.+||.++-... +. .+. +..++.|||||.| ...+. ..+..++..++.. ...
T Consensus 301 e~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElh-mi~d~~rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950|consen 301 EEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELH-MIGDKGRGAILELLLAKILYENLETS 377 (1008)
T ss_pred hhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeee-eeeccccchHHHHHHHHHHHhccccc
Confidence 23312221 2245678999999875543 22 333 3478999999999 22222 1223333333322 234
Q ss_pred ceEEEecccC-ChHHHHHHHhhcC---CCceeEEEEecCCCccceeee-eeehHHHHHHHhccCCCCccccccccccCCC
Q 002165 170 LRVVLMSATA-DITKYRDYFRDLG---RGERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (957)
Q Consensus 170 lklIlmSATl-d~~~~~~~f~~~~---~~~~v~v~~~~~~~~~~~~~v-~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (957)
+++|+||||+ |.+.+++|++..- +-.|++..... .+....+.. +..-+.++... |.
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~i-k~G~~i~~~~r~~~lr~ia~l---------------~~--- 438 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYI-KPGSLIYESSRNKVLREIANL---------------YS--- 438 (1008)
T ss_pred eeEeeeecccCChHHHHHHhhhhheecccCcccchhcc-CCCcccccchhhHHHHHhhhh---------------hh---
Confidence 7899999996 8889999997421 11122211110 000111111 00000000000 00
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC--------------------------
Q 002165 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------------------------- 298 (957)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------------------------- 298 (957)
.+..+.+. ..+..+..+.+ ++ +.++|||||++..++.++..+..
T Consensus 439 -~~~g~~dp-D~~v~L~tet~-------~e-~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 439 -SNLGDEDP-DHLVGLCTETA-------PE-GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred -hhcccCCC-cceeeehhhhh-------hc-CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 00000000 01111111221 21 35699999999988877754420
Q ss_pred ----------CCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCcc
Q 002165 299 ----------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKID 367 (957)
Q Consensus 299 ----------~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~ 367 (957)
..-.+.+..+|+|++.++|+.+...|+.|- .|++||++++.|++.|..+++|- -|.-+
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir---------aP~~g-- 577 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR---------APYVG-- 577 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe---------CCccc--
Confidence 011246889999999999999999999998 99999999999999999999995 22222
Q ss_pred ccceeecCHHhHHHhcCCCCCC---CCCeEEEeechhhh
Q 002165 368 SAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (957)
Q Consensus 368 ~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s~~~~ 403 (957)
....++.+|.||+|||||+ .-|.++.++.+.+.
T Consensus 578 ---~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 578 ---REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ---cchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 2345888999999999999 46999999987653
No 99
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.79 E-value=8.1e-21 Score=219.10 Aligned_cols=542 Identities=8% Similarity=-0.139 Sum_probs=366.8
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-------CcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 21 ~~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-------~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
-++.-+|.+.+-+.|++++..+.++++.+.||||||++.|+.++|.-. ..++.++||+..|...+.++.-+.+
T Consensus 400 getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fct 479 (1282)
T KOG0921|consen 400 GETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCT 479 (1282)
T ss_pred ecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeec
Confidence 445669999999999999999999999999999999999999998632 3799999999999999999988888
Q ss_pred CccCCeeEEeeeccc-ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE
Q 002165 94 CELGGEVGYHIGHSK-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~~-~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
+.++...+|..++.. ....+..+-.+|.+.|+..+..+- .+..+.+.||.|++++++|++..+++.+ .++
T Consensus 480 vgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m---~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~ 550 (1282)
T KOG0921|consen 480 VGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM---ISTYRDLRVVLMSATIDTDLFTNFFSSI------PDV 550 (1282)
T ss_pred cchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh---hccchhhhhhhhhcccchhhhhhhhccc------cce
Confidence 887777777765543 334566777899999998877653 3778899999999999999998887665 356
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhcc-----CCCCcccccccccc---CCC
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGV-----DHGMTSELSSLRYC---SGP 244 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~-----~~~~~~~~~~~~~~---~~~ 244 (957)
.++++|.+...|-.++-. ..+..+|+.+ .+++..+.++..+...- ............-+ ..+
T Consensus 551 ~~~grt~pvq~F~led~~------~~~~~vp~~~----~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~ 620 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDII------QMTQFVPSEP----SQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRL 620 (1282)
T ss_pred eeccccccHHHHHHHHhh------hhhhccCCCc----CccchhhcccccCchhhhcccccccccChhhcchhhhhhhcc
Confidence 999999998877666533 2223333321 11211111111110000 00111111100000 000
Q ss_pred CCCcccccCChhHH--HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC----CCCcEEEEecCCCCHHHHH
Q 002165 245 SPSMANAEIKPEVH--KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSSVDTEQAL 318 (957)
Q Consensus 245 ~~~~~~~~~~~~~~--~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~----~~~~~v~~lhs~l~~~er~ 318 (957)
........+.+... .+...+...|..-.+ ++..|+|++++--+......+... .....+...|+.+...+..
T Consensus 621 se~d~~f~l~Eal~~~i~s~~i~gailvflp--gwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 621 SEKDIPFGLIEALLNDIASRNIDGAVLVFLP--GWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred hhhcchhHHHHHHHhhhcccCCccceeeecC--chHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 00000011111110 011112222222233 578999999998777666655432 1235567788888887777
Q ss_pred HHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEe
Q 002165 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRL 397 (957)
Q Consensus 319 ~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L 397 (957)
.+.+....+. ++...|+..++.|.+-.+.+|++++..+.+.+-....++.+.++|-+...-.||.|||+|...+.||.+
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~ 778 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEA 778 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHH
Confidence 7777665555 999999999999999999999999998888777777788888899999999999999999999999999
Q ss_pred echhhhhhccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCcc
Q 002165 398 VTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEP 477 (957)
Q Consensus 398 ~s~~~~~~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~l 477 (957)
++...+.+|..+..+||.++.+....+.++..-.++++.+ ..+.+.+|+...... ..|...+-+.. .|+..+
T Consensus 779 l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~---p~dav~e~e~~l~~m--~~ld~n~elt~---lg~~la 850 (1282)
T KOG0921|consen 779 LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP---PYDAVIEAEAVLREM--GALDANDELTP---LGRMLA 850 (1282)
T ss_pred HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC---chhhccCchHHHHHh--hhhhccCcccc---hhhhhh
Confidence 9999999999999999999988777777765555666643 336666665554433 33333333333 277789
Q ss_pred CHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhh
Q 002165 478 TFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMV 557 (957)
Q Consensus 478 T~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 557 (957)
|.+|+.....|+.|..+++....+.+-...-...++ ..+..+.++. -.+++. .-...+|.+. .-++
T Consensus 851 ~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~-~~~~~~~~~r-l~g~q~--~~~g~kfsdh----------va~~ 916 (1282)
T KOG0921|consen 851 RLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTP-FVPREKHHSR-LSGTQR--KFAGNKFSDH----------VAIV 916 (1282)
T ss_pred hccCcccccceeeechhhccchhhhhhhcccccccc-cccccccccc-cccchh--hccccccccc----------hhhh
Confidence 999999999999999888765443332111112222 2222332332 123332 2234455421 1355
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHH
Q 002165 558 IMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAV 629 (957)
Q Consensus 558 ~l~~l~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~ 629 (957)
+...+-.++.|..+... ......+|-.+-++.-++..-+++..||. .+
T Consensus 917 ~v~q~~r~~~q~ga~~e-----------------------~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~ 964 (1282)
T KOG0921|consen 917 SVIQGYREAVQMGAAAE-----------------------REFCERYSLSNPVLKMTDGARRQLIDVLR-QC 964 (1282)
T ss_pred hhhhhhHHHhhhhhhhh-----------------------hhHhHhhhhcchhhhhhhhhHHHHHHHHH-hc
Confidence 66777779999988553 23467789999999999999999999998 44
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.77 E-value=2.3e-17 Score=203.76 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC--c-eEEEEccccccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~--r-kVlVaTniae~GIdIp~V~~VId~ 352 (957)
+.++||||.++..+..+.+.|+. ..++.+..+||+|+..+|.++++.|+.+ . +|+|||+++++|+|++.+++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~-~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRE-REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhh-ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 46999999999999999999953 3468899999999999999999999763 4 99999999999999999999999
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-CC--eEEEeech
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DG--QVYRLVTK 400 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G--~~~~L~s~ 400 (957)
||.|.+...| .||+||+||.+ .| .+|.++.+
T Consensus 571 -------fDlP~nP~~~----------eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 571 -------FDLPFNPDLL----------EQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred -------ecCCCCHHHH----------HHHhcccccCCCCceEEEEEccCC
Confidence 9999977766 99999999983 33 34555554
No 101
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=9.3e-18 Score=170.16 Aligned_cols=277 Identities=19% Similarity=0.261 Sum_probs=173.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHH---HHhhcC-CccCC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKM---VAKGRN-CELGG 98 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~r---va~e~~-~~lg~ 98 (957)
.+.+|.++|+...-|-+|+.+|..|-|||..+...-+.. +.-.++|...+|.+|-++.+. +++.+- ..+..
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaV 144 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSV 144 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 357888888887778999999999999995444333322 222577777777777777554 333332 11111
Q ss_pred ee-EEeeec-ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 99 EV-GYHIGH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 99 ~V-gy~v~~-~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.. |..|.. +..+..-++|+|+|||+++.+.+++.+.+.++.++|+||++...-..|....+-......+.+-|+..+|
T Consensus 145 FfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfs 224 (387)
T KOG0329|consen 145 FFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 224 (387)
T ss_pred EEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeee
Confidence 11 122222 2233457899999999999999999998889999999999955445555555544444556778999999
Q ss_pred ccCChHH--HHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCC
Q 002165 177 ATADITK--YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (957)
Q Consensus 177 ATld~~~--~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (957)
||++.+. ..+-|- ..|+++.--.. ..-..+....+|+.- .+..-.
T Consensus 225 atlskeiRpvC~kFm----QdPmEi~vDdE-~KLtLHGLqQ~YvkL----------------------------ke~eKN 271 (387)
T KOG0329|consen 225 ATLSKEIRPVCHKFM----QDPMEIFVDDE-AKLTLHGLQQYYVKL----------------------------KENEKN 271 (387)
T ss_pred eecchhhHHHHHhhh----cCchhhhccch-hhhhhhhHHHHHHhh----------------------------hhhhhh
Confidence 9986442 222221 12232211000 000011111111110 000111
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEc
Q 002165 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAT 334 (957)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaT 334 (957)
...++ ++..+ + ..+++||+.+...+ + | .++ +|||
T Consensus 272 rkl~d----LLd~L---e---FNQVvIFvKsv~Rl-----------------------~----------f--~kr-~vat 305 (387)
T KOG0329|consen 272 RKLND----LLDVL---E---FNQVVIFVKSVQRL-----------------------S----------F--QKR-LVAT 305 (387)
T ss_pred hhhhh----hhhhh---h---hcceeEeeehhhhh-----------------------h----------h--hhh-hHHh
Confidence 11112 22111 1 34788888776531 0 2 124 9999
Q ss_pred cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
++..+|+||..|+.|+| ||.|.+.++| .||.|||||. ..|.++.+.+.+
T Consensus 306 ~lfgrgmdiervNi~~N--------Ydmp~~~DtY----------lHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFN--------YDMPEDSDTY----------LHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hhhccccCcccceeeec--------cCCCCCchHH----------HHHhhhhhccccccceeehhcch
Confidence 99999999999999999 9999988877 9999999999 568899887754
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.73 E-value=1.4e-16 Score=195.91 Aligned_cols=315 Identities=21% Similarity=0.225 Sum_probs=178.5
Q ss_pred cCCCCchHHHHHHHHHHHc---CC-eEEEEcCCCCcHHHHHHHHH---Hhc---CCCcEEEeccHHHHHHHHHHHHHhhc
Q 002165 23 FSSLPVMSLREKIVEKVLE---NR-VTLIVGETGCGKSSQVPQFL---LAE---NMEPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~---~~-~vII~a~TGSGKTt~lp~~l---le~---~~~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
...=+.++.|..+++.+.. .+ .+++.||||+|||++...+. ++. ...+++.+.|.+.+..++++++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 191 FIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred ccCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3445567888888888763 35 89999999999996554443 233 24589999999999999999987643
Q ss_pred CC--ccCC-eeEEeee----cccc---c---------CCCCcEEEEcHHHHHHH-HHccCC---CcCcceEEEEcccccc
Q 002165 93 NC--ELGG-EVGYHIG----HSKH---L---------SERSKIVFKTAGVLLDE-MRDRGL---NALKYKVIILDEVHER 149 (957)
Q Consensus 93 ~~--~lg~-~Vgy~v~----~~~~---~---------~~~t~Ivv~T~g~Ll~~-l~~~~l---~l~~~~~VIIDEaHER 149 (957)
+. ..+. .-|.... ..+. . ..-..+.++|+-..+.. ...... .....+++|+||+|-.
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 32 1111 1111100 0100 0 00112333333333221 111111 1126789999999943
Q ss_pred cccc--cHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhcc
Q 002165 150 SVES--DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGV 227 (957)
Q Consensus 150 ~~~~--d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~ 227 (957)
.-++ -+++.++..+ ..-+.++|+||||++......+....+....+.. ..+..+...-+.+......
T Consensus 351 ~~~~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~-------- 419 (733)
T COG1203 351 ADETMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE-NAKFCPKEDEPGLKRKERV-------- 419 (733)
T ss_pred cccchHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceec-cccccccccccccccccch--------
Confidence 3331 1223333332 2356899999999986655544443322211111 0000000000000000000
Q ss_pred CCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEE
Q 002165 228 DHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHI 307 (957)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~ 307 (957)
+..+... ......+. ...+.++++||.+||...+.++++.|+.... .+..
T Consensus 420 -------------------~~~~~~~--------~~~~~~~~-~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~L 469 (733)
T COG1203 420 -------------------DVEDGPQ--------EELIELIS-EEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLL 469 (733)
T ss_pred -------------------hhhhhhh--------Hhhhhcch-hhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEE
Confidence 0000000 00111111 1122357999999999999999999986554 7999
Q ss_pred ecCCCCHHHHHHHHhcc----cCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHh
Q 002165 308 LHSSVDTEQALMAMKIC----KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (957)
Q Consensus 308 lhs~l~~~er~~i~~~f----~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR 382 (957)
+||.+....|.+.++.. +... .|+|||.+.|.||||. .+++|= + ...++ +..||
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT---------e-~aPid----------SLIQR 528 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT---------E-LAPID----------SLIQR 528 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee---------c-CCCHH----------HHHHH
Confidence 99999999988877643 3334 9999999999999994 777761 2 23344 44999
Q ss_pred cCCCCCCC---CCeEEEeec
Q 002165 383 RGRTGRTC---DGQVYRLVT 399 (957)
Q Consensus 383 ~GRAGR~~---~G~~~~L~s 399 (957)
+||++|.+ +|..|..-.
T Consensus 529 ~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 529 AGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HHHHhhcccccCCceeEeec
Confidence 99999986 566665544
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.1e-16 Score=185.80 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=87.4
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
.+..|-+.++--+++-.+.=++--|..++||+|||..+...++ ......+.|+.|++.+|.+.++.+..... .+|-.
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~-~lGLt 153 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE-FLGLT 153 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc-ccCce
Confidence 3556777777777887776666679999999999955444433 22223577777888888888877665433 46667
Q ss_pred eEEeeecccc----cCCCCcEEEEcHHHH-HHHHHcc-CCCc-----CcceEEEEccccc
Q 002165 100 VGYHIGHSKH----LSERSKIVFKTAGVL-LDEMRDR-GLNA-----LKYKVIILDEVHE 148 (957)
Q Consensus 100 Vgy~v~~~~~----~~~~t~Ivv~T~g~L-l~~l~~~-~l~l-----~~~~~VIIDEaHE 148 (957)
||..++.... ..-.++|+|+||+.| .+.+.++ .+.+ ..+.++||||||.
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 7766543221 123589999999999 8887765 2222 3789999999994
No 104
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=164.81 Aligned_cols=274 Identities=18% Similarity=0.178 Sum_probs=164.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcCCCcEEEeccHHHH-HHHHHHHHHhhcCCccCCeeEEee
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFA-VVAVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~~~~Iivt~Prrla-a~~va~rva~e~~~~lg~~Vgy~v 104 (957)
..|.|.+++.+.+.+.++++..|||.||| +|+|..+.+ +. .+|+.|--.+ -.++.. + +.+|......-.-.-
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-g~--alvi~plislmedqil~-l-kqlgi~as~lnanss 169 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-GF--ALVICPLISLMEDQILQ-L-KQLGIDASMLNANSS 169 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-Cc--eEeechhHHHHHHHHHH-H-HHhCcchhhccCccc
Confidence 34678888899999999999999999999 778776644 32 3444553222 222221 1 222322111000000
Q ss_pred e-----cc---cccCCCCcEEEEcHHHHHHH--HHc---cCCCcCcceEEEEcccccc-----cccccH-HHHHHHHHHh
Q 002165 105 G-----HS---KHLSERSKIVFKTAGVLLDE--MRD---RGLNALKYKVIILDEVHER-----SVESDL-VLVCVKQLLL 165 (957)
Q Consensus 105 ~-----~~---~~~~~~t~Ivv~T~g~Ll~~--l~~---~~l~l~~~~~VIIDEaHER-----~~~~d~-ll~~lk~l~~ 165 (957)
. .+ .......+++|.||+.+... +++ +.+....+.+|-|||+|.- ++..|+ .++++|+
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr--- 246 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR--- 246 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH---
Confidence 0 00 11234578999999988642 222 2334447899999999963 334443 2444443
Q ss_pred cCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 166 KKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 166 ~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
..+...+|+++||.....+.+.-+.++-. .......+..+.. ..|.....
T Consensus 247 qf~~~~iigltatatn~vl~d~k~il~ie--~~~tf~a~fnr~n----------------------------l~yev~qk 296 (695)
T KOG0353|consen 247 QFKGAPIIGLTATATNHVLDDAKDILCIE--AAFTFRAGFNRPN----------------------------LKYEVRQK 296 (695)
T ss_pred hCCCCceeeeehhhhcchhhHHHHHHhHH--hhheeecccCCCC----------------------------ceeEeeeC
Confidence 56888999999997544443332221100 0000000100000 01111111
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~ 325 (957)
|. ... +.+.+++..|...-. +..-+|+|-++.++++++..|. ..++....+|+.|.++++.-+-+.+-
T Consensus 297 p~-----n~d---d~~edi~k~i~~~f~--gqsgiiyc~sq~d~ekva~alk--n~gi~a~~yha~lep~dks~~hq~w~ 364 (695)
T KOG0353|consen 297 PG-----NED---DCIEDIAKLIKGDFA--GQSGIIYCFSQKDCEKVAKALK--NHGIHAGAYHANLEPEDKSGAHQGWI 364 (695)
T ss_pred CC-----ChH---HHHHHHHHHhccccC--CCcceEEEeccccHHHHHHHHH--hcCccccccccccCcccccccccccc
Confidence 11 011 222333333332222 3456999999999999999998 45688889999999998887777777
Q ss_pred CCc-eEEEEccccccCccCCCeeEEEe
Q 002165 326 SHR-KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 326 ~~r-kVlVaTniae~GIdIp~V~~VId 351 (957)
.+. .|||||-...+|||-|+|++||+
T Consensus 365 a~eiqvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 365 AGEIQVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred ccceEEEEEEeeecccCCCCCeeEEEe
Confidence 777 99999999999999999999998
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.68 E-value=4.3e-16 Score=157.61 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---C-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEee
Q 002165 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---N-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 29 ~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---~-~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v 104 (957)
+++|.++++.+.+++++++.||||+|||+.+..+++.. + ...++++.|.+.++.++.+++...... .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 58999999999999999999999999997777666542 2 238899999999999999888776554 222233222
Q ss_pred eccc-------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHH---HHHHHHHhcCCCceEEE
Q 002165 105 GHSK-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL---VCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 105 ~~~~-------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll---~~lk~l~~~~~~lklIl 174 (957)
+... ....+.+|+|+||++|++.+......+.++++|||||+|+.... ++.. .+++. ....++.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHH-SHTTTTSEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHH-hcCCCCCcEEE
Confidence 2111 12357999999999999999875555668999999999954432 3222 22222 22234789999
Q ss_pred ecccCChHHHHH
Q 002165 175 MSATADITKYRD 186 (957)
Q Consensus 175 mSATld~~~~~~ 186 (957)
||||+. ..+.+
T Consensus 158 ~SAT~~-~~~~~ 168 (169)
T PF00270_consen 158 LSATLP-SNVEK 168 (169)
T ss_dssp EESSST-HHHHH
T ss_pred EeeCCC-hhHhh
Confidence 999998 55543
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=7.8e-16 Score=184.67 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=88.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccccccCccCC---Cee-----
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---KVA----- 347 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp---~V~----- 347 (957)
+.++||||++.+..+.++..|.. .++....+|+.+...++..+..+++.| .|+||||+|+||+||+ +|.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~--~gi~~~~Lna~~~~~Ea~ii~~ag~~g-~VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDE--AGIPHAVLNAKNHAKEAEIIMNAGQRG-AVTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCeeEecCCcHHHHHHHHHhcCCCc-eEEEEeccccCCCCCCCCcchhhhCCc
Confidence 46999999999999999999984 457888999999887777777776655 5999999999999994 899
Q ss_pred EEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+||. ++.+.... .+.||.|||||. .||.+..+++-+
T Consensus 517 hVI~--------te~pes~r----------i~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 517 AVIG--------TERHESRR----------IDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEe--------eecCCcHH----------HHHHHhhhhccCCCCcceEEEEecc
Confidence 9998 77776444 459999999999 689998888754
No 107
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.67 E-value=6.8e-16 Score=166.58 Aligned_cols=296 Identities=18% Similarity=0.211 Sum_probs=170.7
Q ss_pred EEEeccHHHHHHHHHHHHHhhcCC----ccC--CeeE-Eeee-cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEE
Q 002165 71 ILCTQPRRFAVVAVAKMVAKGRNC----ELG--GEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVII 142 (957)
Q Consensus 71 Iivt~Prrlaa~~va~rva~e~~~----~lg--~~Vg-y~v~-~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VI 142 (957)
-+|+.|.|.+|.++...+.+..-- .+. -.+| ..-| +-.+...+++|+|+|||+|++.+..+.+.+...+.+|
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 455566666677776655443211 111 0111 1111 2234467899999999999999998877777999999
Q ss_pred Eccccccc--ccccHHHHHHHHHHhc---CCCceEEEecccCC---hHHHHHHHhhcCCCceeEEEE---ecCCCcccee
Q 002165 143 LDEVHERS--VESDLVLVCVKQLLLK---KNDLRVVLMSATAD---ITKYRDYFRDLGRGERVEVLA---IPSTNQRTIF 211 (957)
Q Consensus 143 IDEaHER~--~~~d~ll~~lk~l~~~---~~~lklIlmSATld---~~~~~~~f~~~~~~~~v~v~~---~~~~~~~~~~ 211 (957)
+||++--. .++|++.-+-..+-.. ...++.++.|||+. ..++.+-.-. .+..|.+.. +|... +.+
T Consensus 369 lDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmh--fptwVdLkgeD~vpetv--Hhv 444 (725)
T KOG0349|consen 369 LDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMH--FPTWVDLKGEDLVPETV--HHV 444 (725)
T ss_pred ecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhcc--CceeEecccccccchhh--ccc
Confidence 99999311 3445555444444332 34589999999963 2222221110 001111100 00000 000
Q ss_pred eeeee-----hHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHH--HHHHHHHHhhCCCCCCcEEEEeC
Q 002165 212 QRRVS-----YLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI--HDLVLHIHKNESDIEKSILVFLP 284 (957)
Q Consensus 212 ~v~v~-----yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~lv~~i~~~~~~~~g~iLVFl~ 284 (957)
+.-+. .-.+....++.+..-..+.......+.+.+ .....++ ..-+..|.+.. -.+.+|||.
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~--------s~a~kilkgEy~v~ai~~h~---mdkaiifcr 513 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENP--------SSATKILKGEYGVVAIRRHA---MDKAIIFCR 513 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCCh--------hhhhHHhcCchhhhhhhhhc---cCceEEEEe
Confidence 00000 000011111111000000000000000000 0000000 01122333222 248899999
Q ss_pred CHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecC
Q 002165 285 TYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDV 362 (957)
Q Consensus 285 ~~~~ie~l~~~L~~~~-~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~ 362 (957)
++.+++.+.+++...+ ..+..+.+||+..+.||++.++.|+... +.+|||++|++||||-++-|+|+ ...
T Consensus 514 tk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in--------vtl 585 (725)
T KOG0349|consen 514 TKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN--------VTL 585 (725)
T ss_pred ccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE--------Eec
Confidence 9999999999987543 4689999999999999999999998888 99999999999999999999999 333
Q ss_pred CCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeec
Q 002165 363 NRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (957)
Q Consensus 363 ~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s 399 (957)
|. .|.+|.||+||.||. +-|.++.|+.
T Consensus 586 pd----------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 PD----------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred Cc----------ccchhhhhhhccchhhhcceeEEEee
Confidence 43 345669999999999 7799998865
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=3.4e-15 Score=179.94 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=81.8
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHH--HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~--lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
+..|-++++--+++-.+.=++--|..+.||+|||.. +|.++.......+-++.|++.+|.+.++.+.... ..+|-.|
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~-~~LGlsv 153 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY-EFLGLSV 153 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH-hhcCCeE
Confidence 334445555555666654455559999999999944 4444333333356677788888888888766543 3556677
Q ss_pred EEeeecccc----cCCCCcEEEEcHHHH-HHHHHccC------CCcCcceEEEEccccc
Q 002165 101 GYHIGHSKH----LSERSKIVFKTAGVL-LDEMRDRG------LNALKYKVIILDEVHE 148 (957)
Q Consensus 101 gy~v~~~~~----~~~~t~Ivv~T~g~L-l~~l~~~~------l~l~~~~~VIIDEaHE 148 (957)
|..++..+. ..-.++|+|+|++.| .+.+.+.. .....+.++||||||.
T Consensus 154 ~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 154 GVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred EEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhh
Confidence 766543211 122489999999999 77776543 1234789999999994
No 109
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.64 E-value=1.1e-14 Score=170.50 Aligned_cols=362 Identities=15% Similarity=0.198 Sum_probs=197.6
Q ss_pred CCCCchHHHHHHHHHH----HcC-CeEEEEcCCCCcHH-HHH--HHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 24 SSLPVMSLREKIVEKV----LEN-RVTLIVGETGCGKS-SQV--PQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l----~~~-~~vII~a~TGSGKT-t~l--p~~lle~~-~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
..+-...+|..++..+ .+| +.++|++.||+||| |++ .-.|+..+ .++|+...-|..+..|....+...+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~-- 239 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFL-- 239 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhC--
Confidence 4456678888877655 344 45999999999999 322 22233444 3689999999999888876655543
Q ss_pred ccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHcc-----CCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~-----~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
+.|..+-.. .+......++|.++|...+...+... ++....+++||||||| |++..+.- +++..+- .
T Consensus 240 P~~~~~n~i--~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFd----A 311 (875)
T COG4096 240 PFGTKMNKI--EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFD----A 311 (875)
T ss_pred CCccceeee--ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHH----H
Confidence 222222111 12223346899999999888776543 3334479999999999 88766543 2222221 1
Q ss_pred ceEEEecccCChHH---HHHHHhhcCCCceeEEEEecCC-Ccc-----ceeeeeeehHHHHHHHhccCCCCccccccccc
Q 002165 170 LRVVLMSATADITK---YRDYFRDLGRGERVEVLAIPST-NQR-----TIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (957)
Q Consensus 170 lklIlmSATld~~~---~~~~f~~~~~~~~v~v~~~~~~-~~~-----~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (957)
-+++++||+..+. --.||++ .|+........ ..+ ..+.+.... ..-|......++......
T Consensus 312 -~~~gLTATP~~~~d~~T~~~F~g----~Pt~~YsleeAV~DGfLvpy~vi~i~~~~-----~~~G~~~~~~serek~~g 381 (875)
T COG4096 312 -ATQGLTATPKETIDRSTYGFFNG----EPTYAYSLEEAVEDGFLVPYKVIRIDTDF-----DLDGWKPDAGSEREKLQG 381 (875)
T ss_pred -HHHhhccCcccccccccccccCC----CcceeecHHHHhhccccCCCCceEEeeec-----cccCcCcCccchhhhhhc
Confidence 2344599974321 1234531 22211110000 000 001111000 000000000000000000
Q ss_pred cC--CCCCCccccc-----CChhHHHHHHHHHHHHHhh--CCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCc---EEEEe
Q 002165 241 CS--GPSPSMANAE-----IKPEVHKLIHDLVLHIHKN--ESDIEKSILVFLPTYYALEQQWHLMKPLSSFF---KVHIL 308 (957)
Q Consensus 241 ~~--~~~~~~~~~~-----~~~~~~~li~~lv~~i~~~--~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~---~v~~l 308 (957)
.. .....+...+ ......+.+...+.+.... ..+..+++||||.+..+++.+...|....+.+ -+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 00 0000111111 1122244555555555555 22225799999999999999999987543322 23444
Q ss_pred cCCCCHHHHHHHHhccc-CCc--eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 309 HSSVDTEQALMAMKICK-SHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 309 hs~l~~~er~~i~~~f~-~~r--kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
.+.-... +.. ++.|. ..+ +|.++.+++.||||+|.|..+|- +..- -|+.-+.||+||
T Consensus 462 T~d~~~~-q~~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~QMvGR 521 (875)
T COG4096 462 TGDAEQA-QAL-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFKQMVGR 521 (875)
T ss_pred eccchhh-HHH-HHHHHhcCCCCceEEehhhhhcCCCchheeeeee---------hhhh---------hhHHHHHHHhcC
Confidence 4443332 222 34443 344 99999999999999999998883 3221 178889999999
Q ss_pred CCCCCC--C-----e-EEEeech---hhhhhccCCCCCchhcCCHHHHHHH
Q 002165 386 TGRTCD--G-----Q-VYRLVTK---SFFGTLEDHECPAILRLSLRLQVLL 425 (957)
Q Consensus 386 AGR~~~--G-----~-~~~L~s~---~~~~~l~~~~~PEI~r~~L~~~iL~ 425 (957)
+-|..+ | + -|.+++= -.|-++.+...++-.+.+|+.-++.
T Consensus 522 GTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 522 GTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred ccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 999832 3 2 4455442 2344566666666667777655443
No 110
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=2.3e-14 Score=168.01 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHH----HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC-Ccc--CC
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ----VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CEL--GG 98 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~----lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~-~~l--g~ 98 (957)
+-...+|.+.+..+..+..++|+|||.+|||+. +-..+.+...+.++.+.|...+..+++..+-..++ ..+ |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 667789999999999999999999999999953 33334455566888999999988888766654442 111 11
Q ss_pred e-eEEeeecccccCCCCcEEEEcHHHHHHHHHccCC---CcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 99 E-VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 99 ~-Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l---~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
. .|-..+.-....-+++|+|+-|+.|-..|...+. ...++++||+||+|.-+ +.+ .++++..+..--...+++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG-~~e--d~l~~Eqll~li~CP~L~ 666 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG-NEE--DGLLWEQLLLLIPCPFLV 666 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc-ccc--cchHHHHHHHhcCCCeeE
Confidence 1 1211122222244789999999999988876422 23489999999999422 211 122222222234577999
Q ss_pred ecccC-ChHHHHHHHhhc
Q 002165 175 MSATA-DITKYRDYFRDL 191 (957)
Q Consensus 175 mSATl-d~~~~~~~f~~~ 191 (957)
+|||+ |++.+..|.+..
T Consensus 667 LSATigN~~l~qkWlnq~ 684 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLNQR 684 (1330)
T ss_pred EecccCCHHHHHHHHHHH
Confidence 99997 899999999844
No 111
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.57 E-value=4.7e-14 Score=147.54 Aligned_cols=152 Identities=23% Similarity=0.260 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH----hc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll----e~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
++++|.++++.+.+++++++++|||+|||..+...++ .. ...+++++.|++.++.+.++.+..... ..+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceE
Confidence 6899999999999999999999999999966544443 22 234678888999888888777655432 122233
Q ss_pred EEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 101 gy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
+...+.. .....+.+|+|+|++.|++.+......+.++++||+||+|+ ..+.++...+...+.....+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChHHHHHHHHHhCCcccEEEE
Confidence 3221211 11234789999999999998887766667999999999994 3344444444333334456899999
Q ss_pred ecccCCh
Q 002165 175 MSATADI 181 (957)
Q Consensus 175 mSATld~ 181 (957)
+|||++.
T Consensus 180 ~SAT~~~ 186 (203)
T cd00268 180 FSATMPK 186 (203)
T ss_pred EeccCCH
Confidence 9999873
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.57 E-value=5.5e-14 Score=168.18 Aligned_cols=318 Identities=19% Similarity=0.170 Sum_probs=188.4
Q ss_pred CCCchHHHHHHHHHHHcC----CeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 25 SLPVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~----~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.+.+...|..+++.+... +..++.|.||||||-.+.+.+. ..| +.+++..|--.+.-++..|+...+|..++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 578899999999999766 6899999999999966655554 444 46777778777778888888888776654
Q ss_pred CeeEEe---ee---cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHH----HHHHHHHhcC
Q 002165 98 GEVGYH---IG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL----VCVKQLLLKK 167 (957)
Q Consensus 98 ~~Vgy~---v~---~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll----~~lk~l~~~~ 167 (957)
..-+.. -+ +....+...+|+++|---+. .++.++++|||||-|+-+...+-.. --+..+....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 322111 01 22334678999999975553 2455999999999997443322100 0011222334
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.+..+|+-|||+..+.+.+...+ ....+....+.. ...+.++..++. ..+..
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g-----~y~~~~L~~R~~-~a~~p~v~iiDm-----------r~e~~----------- 399 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESG-----KYKLLRLTNRAG-RARLPRVEIIDM-----------RKEPL----------- 399 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcC-----ceEEEEcccccc-ccCCCcceEEec-----------ccccc-----------
Confidence 57899999999998877666332 112222222111 110111111110 00000
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHH----------------------------------------
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY---------------------------------------- 287 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~---------------------------------------- 287 (957)
.......+...+.+.+.+ . .+.++|+|+|.+.
T Consensus 400 ~~~~~lS~~Ll~~i~~~l-------~-~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 400 ETGRSLSPALLEAIRKTL-------E-RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred ccCccCCHHHHHHHHHHH-------h-cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC
Confidence 000002222222222211 1 1235566655431
Q ss_pred --------------------HHHHHHHHhcCCCCCcEEEEecCCCCHH--HHHHHHhcccCCc-eEEEEccccccCccCC
Q 002165 288 --------------------ALEQQWHLMKPLSSFFKVHILHSSVDTE--QALMAMKICKSHR-KVILATNIAESSVTIP 344 (957)
Q Consensus 288 --------------------~ie~l~~~L~~~~~~~~v~~lhs~l~~~--er~~i~~~f~~~r-kVlVaTniae~GIdIp 344 (957)
.++++.+.|....++..++.+.++.+.. .-+..+..|..|. .|||.|.+++.|.|+|
T Consensus 472 ~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp 551 (730)
T COG1198 472 EPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFP 551 (730)
T ss_pred CCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcc
Confidence 1334444444445667788888776553 3455678888888 9999999999999999
Q ss_pred CeeEEE----eCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEE
Q 002165 345 KVAYVI----DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (957)
Q Consensus 345 ~V~~VI----d~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~ 396 (957)
+++.|. |+|+ +...|+...-.-.-+.|-+|||||. .+|.++.
T Consensus 552 ~vtLVgvl~aD~~L----------~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 552 NVTLVGVLDADTGL----------GSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred cceEEEEEechhhh----------cCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 999875 3333 2222322222345669999999998 7888664
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.56 E-value=2.1e-13 Score=166.34 Aligned_cols=335 Identities=14% Similarity=0.127 Sum_probs=172.3
Q ss_pred hHHHHHHHHHH----Hc------CCeEEEEcCCCCcHHHHHHHH---HHh-cCCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 29 MSLREKIVEKV----LE------NRVTLIVGETGCGKSSQVPQF---LLA-ENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 29 ~~~Q~~il~~l----~~------~~~vII~a~TGSGKTt~lp~~---lle-~~~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
..+|..++..+ .+ .+..+|..+||||||..+... ++. ....+|+++.||..+..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 45676766654 22 357999999999999444333 332 23458999999999999998887664321
Q ss_pred ccCCeeEEeeecccc-cCCCCcEEEEcHHHHHHHHHcc--CCCcC-cceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 95 ELGGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRDR--GLNAL-KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 95 ~lg~~Vgy~v~~~~~-~~~~t~Ivv~T~g~Ll~~l~~~--~l~l~-~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
.. ..++..-..... ......|+|+|.+.|.+.+... ..... .-.+||+|||| |+...++. +.+....++.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCCCC
Confidence 11 001100001111 1235789999999998644321 11111 12389999999 77665433 2222345678
Q ss_pred eEEEecccCCh----HHHHHHHhhcCCCceeEEEEecCC-CccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 171 RVVLMSATADI----TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 171 klIlmSATld~----~~~~~~f~~~~~~~~v~v~~~~~~-~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
..+++|||+-. ..+ ..|+.. .+..+....+... ..+...|+ .|.....+. ..+...-.......+...+.
T Consensus 394 ~~lGfTaTP~~~~d~~t~-~~f~~~-fg~~i~~Y~~~~AI~dG~~~~i--~Y~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTS-LTFAYV-FGRYLHRYFITDAIRDGLTVKI--DYEDRLPED-HLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred cEEEEeCCCccccccccc-ccccCC-CCCeEEEeeHHHHhhcCCeeeE--EEEecchhh-ccChHHHHHHHHHHHHhhhc
Confidence 99999999732 222 222210 0111111111100 11122221 111100000 00000000000000000000
Q ss_pred --CCcccccC-------------ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCC---cEEEE
Q 002165 246 --PSMANAEI-------------KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF---FKVHI 307 (957)
Q Consensus 246 --~~~~~~~~-------------~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~---~~v~~ 307 (957)
.......+ .......+..++.+........+++.+|||.++..+..+.+.|....+. ...+.
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 00000000 0111222333444443332222478999999999999888887543221 23444
Q ss_pred ecCCCCHH---------------------HHHHHHhcccC-Cc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCC
Q 002165 308 LHSSVDTE---------------------QALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (957)
Q Consensus 308 lhs~l~~~---------------------er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (957)
+++....+ ....+.+.|+. +. +|||.++.+.+|+|.|.+..++ .|-+.
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ldKpl 619 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LDKPL 619 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Eeccc
Confidence 44433221 12356677765 34 9999999999999999999887 45554
Q ss_pred CccccceeecCHHhHHHhcCCCCCC-CCCe
Q 002165 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (957)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~-~~G~ 393 (957)
.... ++|..||+-|. .+|+
T Consensus 620 k~h~----------LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 620 KYHG----------LLQAIARTNRIDGKDK 639 (667)
T ss_pred cccH----------HHHHHHHhccccCCCC
Confidence 4333 49999999995 5554
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=1.2e-13 Score=166.19 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 336 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTni 336 (957)
.+..+.+.+..++.. +.+||||+.+.+..+.++..|.. .++....+|+..+..++..+.++|+.|. |+||||+
T Consensus 434 K~~Aii~ei~~~~~~----GrpVLV~t~sv~~se~ls~~L~~--~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnm 506 (908)
T PRK13107 434 KYQAIIKDIKDCRER----GQPVLVGTVSIEQSELLARLMVK--EKIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEeCcHHHHHHHHHHHHH--CCCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCC
Confidence 344455556666643 46999999999999999999984 5678889999999999999999998876 9999999
Q ss_pred cccCccCC
Q 002165 337 AESSVTIP 344 (957)
Q Consensus 337 ae~GIdIp 344 (957)
|++|+||.
T Consensus 507 AGRGTDIk 514 (908)
T PRK13107 507 AGRGTDIV 514 (908)
T ss_pred cCCCccee
Confidence 99999986
No 115
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=5.1e-14 Score=157.30 Aligned_cols=279 Identities=16% Similarity=0.150 Sum_probs=171.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEcH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTA 121 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~ 121 (957)
.+.+.-+|||.||||+-..|-+.+... -++.-|-|++|..++.|+.. .|....-..|-..++.......+..+-||-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~aks--GvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvScTV 267 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAKS--GVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVSCTV 267 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhcc--ceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceEEEE
Confidence 467788999999999988888876543 35667889999999999854 454443333433333222234577888888
Q ss_pred HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEecccCChHHHHHHHhhcCCCceeEEE
Q 002165 122 GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSATADITKYRDYFRDLGRGERVEVL 200 (957)
Q Consensus 122 g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~-~lklIlmSATld~~~~~~~f~~~~~~~~v~v~ 200 (957)
+|.- + -..|++.||||++ .+-+.+-.-++-+.++.... .+++-+=-|-+ +...+....- ++.+++.
T Consensus 268 EM~s-------v-~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl--dlV~~i~k~T--Gd~vev~ 334 (700)
T KOG0953|consen 268 EMVS-------V-NTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVL--DLVRKILKMT--GDDVEVR 334 (700)
T ss_pred EEee-------c-CCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHH--HHHHHHHhhc--CCeeEEE
Confidence 8762 1 1279999999999 45555444444444432211 12221111111 1122222211 1222222
Q ss_pred EecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEE
Q 002165 201 AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSIL 280 (957)
Q Consensus 201 ~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iL 280 (957)
.... .-|..+ . + .++..+..-. .|+++
T Consensus 335 ~YeR-----l~pL~v----------------------------------~--------~---~~~~sl~nlk---~GDCv 361 (700)
T KOG0953|consen 335 EYER-----LSPLVV----------------------------------E--------E---TALGSLSNLK---PGDCV 361 (700)
T ss_pred eecc-----cCccee----------------------------------h--------h---hhhhhhccCC---CCCeE
Confidence 1110 000000 0 0 1111111111 45666
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC--Cc-eEEEEccccccCccCCCeeEEEeCCccee
Q 002165 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (957)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~--~r-kVlVaTniae~GIdIp~V~~VId~G~~k~ 357 (957)
| +-++++|-.+...+...+ +-.+..+||+||++.|.+.-..|.+ +. +|+||||..++|+|+ +|+-||-+-+.
T Consensus 362 V-~FSkk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~-- 436 (700)
T KOG0953|consen 362 V-AFSKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLI-- 436 (700)
T ss_pred E-EeehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecc--
Confidence 5 557788888888887433 3458889999999988877777765 45 999999999999999 78888853322
Q ss_pred eeecCCCCccccceeecCHHhHHHhcCCCCCCC----CCeEEEeechh
Q 002165 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS 401 (957)
Q Consensus 358 ~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G~~~~L~s~~ 401 (957)
+.+.-.+.+|+.+++.|-+|||||.+ .|.+-.|+.++
T Consensus 437 -------Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 437 -------KYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred -------cCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 23344567899999999999999983 58888888764
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=3.9e-13 Score=161.97 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=85.8
Q ss_pred CC--chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 26 LP--VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 26 LP--i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
-| ++++|.+++..+..++++|..++||+|||+.+...++... ...+.|+.|++.+|.+.++.+... ...+|..||
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L-~k~lGLsV~ 167 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSV-LRWLGLTTG 167 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHH-HhhcCCeEE
Confidence 46 8999999999999999999999999999966665555332 122444455566777777765443 224455566
Q ss_pred Eeeecccc----cCCCCcEEEEcHHHH-HHHHHccCCCcC-------cceEEEEccccc
Q 002165 102 YHIGHSKH----LSERSKIVFKTAGVL-LDEMRDRGLNAL-------KYKVIILDEVHE 148 (957)
Q Consensus 102 y~v~~~~~----~~~~t~Ivv~T~g~L-l~~l~~~~l~l~-------~~~~VIIDEaHE 148 (957)
..++..+. ..-.++|+|+|||.| ++.+.++.+.+. .+.++||||||.
T Consensus 168 ~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 168 VLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 55443221 112589999999999 998887654443 457999999994
No 117
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.50 E-value=1e-12 Score=163.37 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=91.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC---Cc-eEEEEccccccCccCCCeeEEEe
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~---~r-kVlVaTniae~GIdIp~V~~VId 351 (957)
+.+||||+.....+..+.+.|. ..++....+||+++.++|..+++.|.. .+ -+|++|.+++.|||+...++||.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~--~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLM--YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHH--HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4699999998888888888886 346788899999999999999999953 23 57899999999999999999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechhhh
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF 403 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~~~ 403 (957)
||++.+.... .|+.||+.|.+ +=.+|+|+++...
T Consensus 565 --------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 565 --------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred --------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999876665 89999998874 3468999987554
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.46 E-value=8.4e-12 Score=148.63 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=173.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcC--CccCCee
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRN--CELGGEV 100 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~rva~e~~--~~lg~~V 100 (957)
.+.|..|.--...+..|+..-|.||||.||||....+ +...+ ++++++.|++.++.|+++++..... ..+...+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 4788999999999999999999999999999654433 33334 6788888999999999999876431 1122233
Q ss_pred EEeeec---------ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccc---ccccccHHHHHH--------
Q 002165 101 GYHIGH---------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---RSVESDLVLVCV-------- 160 (957)
Q Consensus 101 gy~v~~---------~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE---R~~~~d~ll~~l-------- 160 (957)
.|+-.. ++..+.+.+|+|+|.+.|.+.+..- .-.++++|++|++|- .+-+.|-++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 344221 1122568999999999998766531 113799999999993 223333332221
Q ss_pred --------HHH----------------------HhcCCCceEEEecccCChH-----HHHHHHhhcCCCceeEEEEecCC
Q 002165 161 --------KQL----------------------LLKKNDLRVVLMSATADIT-----KYRDYFRDLGRGERVEVLAIPST 205 (957)
Q Consensus 161 --------k~l----------------------~~~~~~lklIlmSATld~~-----~~~~~f~~~~~~~~v~v~~~~~~ 205 (957)
+.- ..+...-.+|++|||..+. .|.+.++. ++ +.
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-------ev----G~ 306 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-------EV----GS 306 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC-------cc----Cc
Confidence 110 1123456899999997433 23333321 00 00
Q ss_pred CccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCC
Q 002165 206 NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (957)
Q Consensus 206 ~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~ 285 (957)
. ..++..+.+ ........+.+.+++..+ +...|||+|.
T Consensus 307 ~--------~~~LRNIvD---------------------------~y~~~~~~e~~~elvk~l-------G~GgLIfV~~ 344 (1187)
T COG1110 307 G--------GEGLRNIVD---------------------------IYVESESLEKVVELVKKL-------GDGGLIFVPI 344 (1187)
T ss_pred c--------chhhhheee---------------------------eeccCccHHHHHHHHHHh-------CCCeEEEEEc
Confidence 0 011111111 011111112222333222 2357999999
Q ss_pred ---HHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEc----cccccCccCC-CeeEEEeCCcce
Q 002165 286 ---YYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIP-KVAYVIDSCRSL 356 (957)
Q Consensus 286 ---~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaT----niae~GIdIp-~V~~VId~G~~k 356 (957)
++.++++++.|+ ..++.+..+|+. ....++.|..|. +|+|.. +++-+|||+| -|+|+|-.|.+|
T Consensus 345 d~G~e~aeel~e~Lr--~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 345 DYGREKAEELAEYLR--SHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HHhHHHHHHHHHHHH--hcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 889999999998 566889999884 245678898888 999875 6899999999 789999999886
Q ss_pred ee
Q 002165 357 QV 358 (957)
Q Consensus 357 ~~ 358 (957)
.+
T Consensus 418 ~r 419 (1187)
T COG1110 418 FR 419 (1187)
T ss_pred ee
Confidence 54
No 119
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.43 E-value=2.6e-13 Score=125.60 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=55.2
Q ss_pred HHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchH
Q 002165 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDA 531 (957)
Q Consensus 455 ~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~ 531 (957)
.|++.|..+||||++ | ++|++|+.|+.||++|++|+||+.+..+||+.++++|||+|++ ..+|..|.++++
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~ 71 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEE 71 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHH
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHH
Confidence 478999999999874 5 6999999999999999999999999999999999999999998 558888876544
No 120
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.43 E-value=1.9e-12 Score=125.24 Aligned_cols=134 Identities=33% Similarity=0.379 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeeccccc------CC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL------SE 112 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~----~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~------~~ 112 (957)
++++|.|+||+|||+++..++.+.. .++++++.|++.++.+...++...... +..+.+..+..... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999988887776653 368999999999999998888776543 34455554443322 46
Q ss_pred CCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 113 ~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
...|+++|++.+.+.+.........+++|||||+|. .....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988876543344899999999993 333333222223334456678999999995
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.41 E-value=2.6e-11 Score=152.63 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC--CCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
..+.+.+.+..+.... +|++|||+++.+..+.++..|... ..++.+.. .+.. ..|..+++.|+.+. .|+++
T Consensus 658 ~~~~ia~~i~~l~~~~---~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlg 731 (850)
T TIGR01407 658 YAQEIASYIIEITAIT---SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLG 731 (850)
T ss_pred HHHHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEE
Confidence 3344445555554443 479999999999999999998642 22333332 2332 46777888998776 99999
Q ss_pred ccccccCccCCCee--EEEeCCcceeeeecCCCC--------------cccccee--ecCHHhHHHhcCCCCCCC--CCe
Q 002165 334 TNIAESSVTIPKVA--YVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRTC--DGQ 393 (957)
Q Consensus 334 Tniae~GIdIp~V~--~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iSkas~~QR~GRAGR~~--~G~ 393 (957)
|+.+.+|||+|+.. .||-.|++ |.++.. -+.+... |-.--...|-+||.=|.. .|.
T Consensus 732 t~sf~EGVD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 732 TSSFWEGVDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred cceeecccccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 99999999999765 56666665 232221 0111011 112345789999999984 466
Q ss_pred EEEe
Q 002165 394 VYRL 397 (957)
Q Consensus 394 ~~~L 397 (957)
++.|
T Consensus 808 v~il 811 (850)
T TIGR01407 808 IVIL 811 (850)
T ss_pred EEEE
Confidence 5544
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=4.1e-12 Score=130.73 Aligned_cols=155 Identities=25% Similarity=0.234 Sum_probs=107.5
Q ss_pred CCCchHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhcCC----CcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 25 SLPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~~~----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
..+++++|.++++.+... +++++.|+||+|||+.+..++++... .+++++.|++.++.+..+++........+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 356789999999999988 99999999999999987777776533 4688999988888888888776553221111
Q ss_pred eEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 002165 100 VGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (957)
Q Consensus 100 Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklI 173 (957)
.....+.. .......+|+++|++.+.+.+.........+++|||||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 21111111 012233499999999999998875544558999999999954321 22222222222235678999
Q ss_pred EecccCC
Q 002165 174 LMSATAD 180 (957)
Q Consensus 174 lmSATld 180 (957)
+||||+.
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999984
No 123
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.35 E-value=6.2e-11 Score=144.21 Aligned_cols=250 Identities=18% Similarity=0.152 Sum_probs=128.7
Q ss_pred CcEEEEcHHHHHHHHH--ccC---CC--cCcceEEEEcccccccccccHHHHHHHHHHh--cCCCceEEEecccCChHHH
Q 002165 114 SKIVFKTAGVLLDEMR--DRG---LN--ALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKNDLRVVLMSATADITKY 184 (957)
Q Consensus 114 t~Ivv~T~g~Ll~~l~--~~~---l~--l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~--~~~~lklIlmSATld~~~~ 184 (957)
..|+|||...++.... ..+ +. -..-++|||||+|- .+. ..+.++..++. ..-..+||+||||+++...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa--YD~-~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD--YEP-EDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc--CCH-HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 5899999998887652 111 11 11568999999993 332 23334444443 3456789999999987765
Q ss_pred HHHHhhc-----------CCC-cee--EEEEecCCCc--ccee------eeeeehHHHHHHHhccCCCCccccccccc-c
Q 002165 185 RDYFRDL-----------GRG-ERV--EVLAIPSTNQ--RTIF------QRRVSYLEQVTELLGVDHGMTSELSSLRY-C 241 (957)
Q Consensus 185 ~~~f~~~-----------~~~-~~v--~v~~~~~~~~--~~~~------~v~v~yl~~~~~~l~~~~~~~~~~~~~~~-~ 241 (957)
..++... +.+ .++ ....+..... .... .....|+.+....+... ....... .
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~-----p~~R~a~i~ 714 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKK-----PVRRLAELL 714 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcC-----cccceEEEe
Confidence 5544322 211 111 1222221100 0000 00011222222222100 0000000 0
Q ss_pred CCCCCCcccccCChhHHHHHHHHHHHHHhhC----CCCCCcE---EEEeCCHHHHHHHHHHhcC----CCCCcEEEEecC
Q 002165 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNE----SDIEKSI---LVFLPTYYALEQQWHLMKP----LSSFFKVHILHS 310 (957)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~----~~~~g~i---LVFl~~~~~ie~l~~~L~~----~~~~~~v~~lhs 310 (957)
..+............+.+.+.+.+..+|... +..+++| ||=+.+.+.+-.+++.|.. ....+.+..+||
T Consensus 715 ~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS 794 (1110)
T TIGR02562 715 SLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA 794 (1110)
T ss_pred ecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecc
Confidence 0011111111222344555555566666432 2122333 6667777766666666543 233456788999
Q ss_pred CCCHHHHHHHHhcc----------------------cC----Cc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCC
Q 002165 311 SVDTEQALMAMKIC----------------------KS----HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVN 363 (957)
Q Consensus 311 ~l~~~er~~i~~~f----------------------~~----~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~ 363 (957)
..+...|..+++.. +. +. .|||||.+.|.|+|++ .+++|- + +
T Consensus 795 r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~---------~-~ 863 (1110)
T TIGR02562 795 QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA---------D-P 863 (1110)
T ss_pred cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee---------c-c
Confidence 98776665554221 11 23 9999999999999994 555551 1 3
Q ss_pred CCccccceeecCHHhHHHhcCCCCCCCCC
Q 002165 364 RKIDSAELVWVSQSQAEQRRGRTGRTCDG 392 (957)
Q Consensus 364 ~~~~~l~~~~iSkas~~QR~GRAGR~~~G 392 (957)
..++++ +||+||..|.+.+
T Consensus 864 ~~~~sl----------iQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 864 SSMRSI----------IQLAGRVNRHRLE 882 (1110)
T ss_pred CcHHHH----------HHHhhcccccccC
Confidence 344444 9999999998543
No 124
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.32 E-value=3.7e-12 Score=115.71 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=69.9
Q ss_pred HHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhccc-CcHHHHHHHHHHhccCCCcccCCCcchHHH
Q 002165 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI-GMLREGILLGILMDTQPLPILHPFGDDALF 533 (957)
Q Consensus 455 ~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~-~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~ 533 (957)
.|++.|..+||||.+ | ++|++|+.|++||++|++|+||+.+..+ +|..+++.|+|++++.+ +|..| ..+...
T Consensus 1 ~A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHH
Confidence 378999999999873 5 6999999999999999999999999999 89999999999999775 56666 334444
Q ss_pred HHHhcccccC-CCC
Q 002165 534 AEYTGCYFGG-DGN 546 (957)
Q Consensus 534 ~~~~~~~~~~-~~d 546 (957)
...+..|.+. .||
T Consensus 74 ~~~~~~~~~~~~~D 87 (92)
T smart00847 74 DAARRRFASGRESD 87 (92)
T ss_pred HHHHHHccCCCCCC
Confidence 5556666665 565
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.29 E-value=1.7e-11 Score=118.09 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=88.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||+++...++.+++.|.. .+..+..+||+++..+|..+++.|+.+. +|+++|+++++|+|+|++++||.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--- 102 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN--- 102 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE---
Confidence 57999999999999999999974 4578999999999999999999998888 99999999999999999999997
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-CCeEEE
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 396 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~~~~ 396 (957)
++++. +...+.|+.||+||.+ .|.|+.
T Consensus 103 -----~~~~~----------~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 103 -----YDLPW----------SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred -----eCCCC----------CHHHheecccccccCCCCceEEe
Confidence 66654 4555699999999995 787764
No 126
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=4e-11 Score=132.46 Aligned_cols=315 Identities=17% Similarity=0.210 Sum_probs=176.8
Q ss_pred CchHHHHHHHHHHHcC---CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 27 PVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~---~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
-+.|+|++.+..+..| +.-||+-|-|+|||..-.-.. -.-.+..+|.....+.+.|....+.......-...+-+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 3679999999998765 467999999999993211100 011245677777777777776666554433322222222
Q ss_pred eecccccCCCCcEEEEcHHHHHHH---------HHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDE---------MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~---------l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
-...+....++.|+|+|..|+..- +++ .+.-..++++|+||+|- +- ..+.|+++..-..---++
T Consensus 381 sd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~-~l~~~EWGllllDEVHv--vP----A~MFRRVlsiv~aHcKLG 453 (776)
T KOG1123|consen 381 SDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMD-FLRGREWGLLLLDEVHV--VP----AKMFRRVLSIVQAHCKLG 453 (776)
T ss_pred ccccccCCCCCcEEEEeeehhhhcccccHHHHHHHH-HHhcCeeeeEEeehhcc--ch----HHHHHHHHHHHHHHhhcc
Confidence 112233456788999999887521 110 11123789999999992 21 223344433211112368
Q ss_pred ecccCC--hHHHH-------------HHHhhcCCCceeEEEEecCCCccceeee-eeehHHHHHHHhccCCCCccccccc
Q 002165 175 MSATAD--ITKYR-------------DYFRDLGRGERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSL 238 (957)
Q Consensus 175 mSATld--~~~~~-------------~~f~~~~~~~~v~v~~~~~~~~~~~~~v-~v~yl~~~~~~l~~~~~~~~~~~~~ 238 (957)
++||+- .+++. +|.+....++-..|--... ..|. ..+|-+-..+..
T Consensus 454 LTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEV-----WCpMt~eFy~eYL~~~t------------- 515 (776)
T KOG1123|consen 454 LTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEV-----WCPMTPEFYREYLRENT------------- 515 (776)
T ss_pred ceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeee-----ecCCCHHHHHHHHhhhh-------------
Confidence 899961 12221 2222222222221110000 0000 011211110000
Q ss_pred cccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHH
Q 002165 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQAL 318 (957)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~ 318 (957)
.......-+++..+... ..+...|... +.+||||....-.....+-.|.+ -.++|..++.+|.
T Consensus 516 ------~kr~lLyvMNP~KFraC-qfLI~~HE~R---gDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm 578 (776)
T KOG1123|consen 516 ------RKRMLLYVMNPNKFRAC-QFLIKFHERR---GDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERM 578 (776)
T ss_pred ------hhhheeeecCcchhHHH-HHHHHHHHhc---CCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHH
Confidence 00001111222233333 3344445443 46999999998887777776652 3578999999999
Q ss_pred HHHhcccCCc--eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCC-----
Q 002165 319 MAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD----- 391 (957)
Q Consensus 319 ~i~~~f~~~r--kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~----- 391 (957)
+|++.|+-.. +-|+-.-++.+|||+|..++.|. .....+ |+-+-.||.||.-|...
T Consensus 579 ~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH~G---------SRRQEAQRLGRILRAKk~~de~ 641 (776)
T KOG1123|consen 579 KILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHGG---------SRRQEAQRLGRILRAKKRNDEE 641 (776)
T ss_pred HHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Eccccc---------chHHHHHHHHHHHHHhhcCccc
Confidence 9999997543 77888899999999999999997 222222 55566899999888732
Q ss_pred --CeEEEeechh
Q 002165 392 --GQVYRLVTKS 401 (957)
Q Consensus 392 --G~~~~L~s~~ 401 (957)
..-|.|++++
T Consensus 642 fnafFYSLVS~D 653 (776)
T KOG1123|consen 642 FNAFFYSLVSKD 653 (776)
T ss_pred cceeeeeeeecc
Confidence 2345555543
No 127
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.26 E-value=2.1e-11 Score=124.62 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHHHc-------CCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 26 LPVMSLREKIVEKVLE-------NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~-------~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
..++++|.+++..+.+ ++.+++.+|||||||..+..++.+... +++++.|+..++.+....+..........
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 4688999999999874 689999999999999776665555444 78888899888888887773322111100
Q ss_pred --------eeE--E------eeecccccCCCCcEEEEcHHHHHHHHHccC-----------CCcCcceEEEEcccccccc
Q 002165 99 --------EVG--Y------HIGHSKHLSERSKIVFKTAGVLLDEMRDRG-----------LNALKYKVIILDEVHERSV 151 (957)
Q Consensus 99 --------~Vg--y------~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~-----------l~l~~~~~VIIDEaHER~~ 151 (957)
..+ + ............++.+.|...|........ .....+++||+|||| +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH-~~~ 159 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH-HYP 159 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG-CTH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh-hcC
Confidence 000 0 000011124578899999999987765311 112378999999999 343
Q ss_pred cccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 152 ESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 152 ~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
...- .+.+.. .+...+|+||||+.
T Consensus 160 ~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 160 SDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred CHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 3332 233333 66778999999964
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.25 E-value=2.1e-11 Score=147.50 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=95.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
+.++|||+++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~--~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--- 516 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKE--LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 516 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhh--hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE---
Confidence 46899999999999999999984 4578899999999999999999999988 99999999999999999999997
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeech
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~ 400 (957)
+|.... -.+-|..+++||+|||||...|+++.+++.
T Consensus 517 -----~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 517 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred -----eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 553210 112356677999999999999999988775
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=1.5e-10 Score=129.30 Aligned_cols=304 Identities=12% Similarity=0.041 Sum_probs=176.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH----HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQV----PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l----p~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
-+.+|.+++..+-+|+++++.-.|.+||++.. -.+++......-++.-|....++.- .-|..|-..
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~----------~~~~~V~~~ 356 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNG----------SKGQVVHVE 356 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhcc----------CCceEEEEE
Confidence 46789999999999999999999999999421 1122221112223333332222211 011111100
Q ss_pred ---------eecccc---------cCCCCcEEEEcHHHHHHHHHccCCC----cCcceEEEEcccccccccccH-HHHHH
Q 002165 104 ---------IGHSKH---------LSERSKIVFKTAGVLLDEMRDRGLN----ALKYKVIILDEVHERSVESDL-VLVCV 160 (957)
Q Consensus 104 ---------v~~~~~---------~~~~t~Ivv~T~g~Ll~~l~~~~l~----l~~~~~VIIDEaHER~~~~d~-ll~~l 160 (957)
|...+. ...+.+++|..|.+.......+.+. +-...++++||+|-...-+.. ....+
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 011111 1346789999999888766543322 125567899999943222211 11223
Q ss_pred HHHH------hcCCCceEEEecccC-C-hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCc
Q 002165 161 KQLL------LKKNDLRVVLMSATA-D-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMT 232 (957)
Q Consensus 161 k~l~------~~~~~lklIlmSATl-d-~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~ 232 (957)
+.++ ....+++++-.|||+ + .....+.|+. ..++++.+.+.+.+...-|- +-+
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~----~E~~Li~~DGSPs~~K~~V~--WNP------------- 497 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANL----SELELVTIDGSPSSEKLFVL--WNP------------- 497 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC----cceEEEEecCCCCccceEEE--eCC-------------
Confidence 3332 224679999999997 3 3344555543 45677777776543222111 000
Q ss_pred cccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC----CCCC--cEEE
Q 002165 233 SELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP----LSSF--FKVH 306 (957)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~----~~~~--~~v~ 306 (957)
...|. ....-...+. -..+++.++... +-+++.||+.++-+|.+....+. -++. -.|.
T Consensus 498 ----------~~~P~-~~~~~~~~i~-E~s~~~~~~i~~----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~ 561 (1034)
T KOG4150|consen 498 ----------SAPPT-SKSEKSSKVV-EVSHLFAEMVQH----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAIT 561 (1034)
T ss_pred ----------CCCCc-chhhhhhHHH-HHHHHHHHHHHc----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 00000 0000011111 112333333322 34899999999988866544331 1111 1245
Q ss_pred EecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 307 ~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
.+.||-..++|+++++..=+|. +-|+|||.+|-||||.+.+.|+.+|++ .|-+++.|.+||
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP------------------~S~aNl~QQ~GR 623 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP------------------GSIANLWQQAGR 623 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc------------------hhHHHHHHHhcc
Confidence 5678999999999998755556 999999999999999999999998873 367888999999
Q ss_pred CCCC-CCCeE
Q 002165 386 TGRT-CDGQV 394 (957)
Q Consensus 386 AGR~-~~G~~ 394 (957)
|||. .+...
T Consensus 624 AGRRNk~SLa 633 (1034)
T KOG4150|consen 624 AGRRNKPSLA 633 (1034)
T ss_pred ccccCCCceE
Confidence 9998 55543
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.21 E-value=9.4e-12 Score=109.19 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=65.0
Q ss_pred CCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhH
Q 002165 301 SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 379 (957)
Q Consensus 301 ~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~ 379 (957)
.++.+..+||+++.++|..+++.|+.+. +|||||+++++|||+|++++||. |+++. |..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 4588999999999999999999999888 99999999999999999999998 77754 55667
Q ss_pred HHhcCCCCCCC
Q 002165 380 EQRRGRTGRTC 390 (957)
Q Consensus 380 ~QR~GRAGR~~ 390 (957)
.||+||+||.+
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999963
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=8e-11 Score=142.69 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
++.+.+.+...+.. +.+||||+++.+..+.+++.|.. .++....+|+ .+.+|+..+..|+++. .|+||||+
T Consensus 584 ~~Ali~~I~~~~~~----grpVLIft~Sve~sE~Ls~~L~~--~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 584 YNAIVLKVEELQKK----GQPVLVGTASVEVSETLSRMLRA--KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHhhC----CCCEEEEeCcHHHHHHHHHHHHH--cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34444444444432 46999999999999999999984 4577888997 5778888888999988 99999999
Q ss_pred cccCccCC---CeeEE-----EeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 337 AESSVTIP---KVAYV-----IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 337 ae~GIdIp---~V~~V-----Id~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
|++|+||+ +|..| |. ++.+. |.-.+.||.|||||. .||.+..+++.++
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999999 55433 54 33333 444559999999999 6899999988754
No 132
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.19 E-value=7e-11 Score=143.94 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=95.3
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
+.++|||+++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~--~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii--- 520 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKE--LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI--- 520 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhh--cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE---
Confidence 46899999999999999999984 4688999999999999999999999888 99999999999999999999998
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeech
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~ 400 (957)
+|.... -.|-+..+|+||+||+||...|+|+.+++.
T Consensus 521 -----~d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 521 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred -----eCCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 554210 012356778999999999999999998874
No 133
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=6.7e-10 Score=131.37 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEcccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTnia 337 (957)
...+.+-+...+.. +.+|||.+.+.+..+.+...|... ++....|++.-...|...+-++-+.| .|.||||+|
T Consensus 413 ~~Aii~ei~~~~~~----GrPVLVgt~sI~~SE~ls~~L~~~--gI~h~vLNAk~~~~EA~IIa~AG~~g-aVTIATNMA 485 (764)
T PRK12326 413 NDAIVEHIAEVHET----GQPVLVGTHDVAESEELAERLRAA--GVPAVVLNAKNDAEEARIIAEAGKYG-AVTVSTQMA 485 (764)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhC--CCcceeeccCchHhHHHHHHhcCCCC-cEEEEecCC
Confidence 44444555555543 469999999999999999999853 46666677664444433333332211 899999999
Q ss_pred ccCccCC---------------CeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 338 ESSVTIP---------------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 338 e~GIdIp---------------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
++|.||. |=-+||-+.+.. |+--=.|-.|||||. .||.+-.+.|-
T Consensus 486 GRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 486 GRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred CCccCeecCCCcccchHHHHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEEc
Confidence 9999986 112455433222 222238999999999 58887666553
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.16 E-value=1.4e-10 Score=111.42 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=85.1
Q ss_pred cCCeEEEEcCCCCcHHHH-HHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecc-cccCCCCcE
Q 002165 41 ENRVTLIVGETGCGKSSQ-VPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSERSKI 116 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~-lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~-~~~~~~t~I 116 (957)
+++..+|...+|+|||+. +|.++.+.. ..+++++.|+|+++..+.+.+... .+.+..... .....+.-|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~-------~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL-------PVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-------SEEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC-------CcccCceeeeccccCCCcc
Confidence 567789999999999975 777776542 347999999999999988876431 233332221 223567889
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
-+||.+.+.+.+.+ +....+|++||+||+|-.+..+=...+.++.... ....++|+||||++
T Consensus 76 ~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPP 137 (148)
T PF07652_consen 76 DVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPP 137 (148)
T ss_dssp EEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-T
T ss_pred cccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCC
Confidence 99999999988876 4456799999999999432222233445555533 34578999999975
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=1.8e-09 Score=130.85 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=80.3
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHH--HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt--~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
+..|-+.++--+++-.+.=++--|....||+|||. .+|.++.......+.++.|...+|.+-+..+...+. .+|-.|
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v 154 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE-FLGLSV 154 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCEE
Confidence 34455556666677776656677899999999994 344554444445677777888888888887776554 467777
Q ss_pred EEeeeccc----ccCCCCcEEEEcHHHH-HHHHHcc------CCCcCcceEEEEccccc
Q 002165 101 GYHIGHSK----HLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHE 148 (957)
Q Consensus 101 gy~v~~~~----~~~~~t~Ivv~T~g~L-l~~l~~~------~l~l~~~~~VIIDEaHE 148 (957)
|...+... +..=.++|+|+|..-| .+.|++. ..-...+.++||||+|-
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 75533211 1112489999998776 2222221 11124789999999994
No 136
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.09 E-value=1.2e-08 Score=118.52 Aligned_cols=348 Identities=17% Similarity=0.231 Sum_probs=192.6
Q ss_pred CCchHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHH---Hh-cC-CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 26 LPVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFL---LA-EN-MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l----~~~~~vII~a~TGSGKTt~lp~~l---le-~~-~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
=.+.+||-+-+..+ .++-+.|+.-+-|-|||.|-..++ .. .+ .+.-+|+.|...+..-+.+ ++... +-
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~E-f~rf~--P~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNE-FKRFT--PS 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHH-HHHhC--CC
Confidence 34667887766654 356689999999999996654443 22 22 3567777785544322221 22211 11
Q ss_pred CCeeEEeeec--------ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHH-HHHHHHhcC
Q 002165 97 GGEVGYHIGH--------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV-CVKQLLLKK 167 (957)
Q Consensus 97 g~~Vgy~v~~--------~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~-~lk~l~~~~ 167 (957)
-..+-|.-.. +-......+|+++|.+|.++.-. .+.-...+++|||||| |.-+..-.+. .++.+.
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~--- 316 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFK--- 316 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhh-hhcchhhHHHHHHHHhc---
Confidence 1122332110 11123478999999999987621 1112278999999999 8877765443 334332
Q ss_pred CCceEEEecccC---------------------ChHHHHHHHhhcC---CCcee-----------------EEE-EecCC
Q 002165 168 NDLRVVLMSATA---------------------DITKYRDYFRDLG---RGERV-----------------EVL-AIPST 205 (957)
Q Consensus 168 ~~lklIlmSATl---------------------d~~~~~~~f~~~~---~~~~v-----------------~v~-~~~~~ 205 (957)
.+ .-++++.|+ +.+.|..||+... ....+ .|. ..|..
T Consensus 317 ~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred cc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 22 345667773 2467777876421 00000 000 00000
Q ss_pred Ccccee-----eeeeehHHHHHHHhccCCCCcc-c-------cc------ccccc---CCC-CCCcccccCChh--HHHH
Q 002165 206 NQRTIF-----QRRVSYLEQVTELLGVDHGMTS-E-------LS------SLRYC---SGP-SPSMANAEIKPE--VHKL 260 (957)
Q Consensus 206 ~~~~~~-----~v~v~yl~~~~~~l~~~~~~~~-~-------~~------~~~~~---~~~-~~~~~~~~~~~~--~~~l 260 (957)
..-..+ ..+.+|-.-+...+..-.+... + .+ ..-|. ..+ .+...+..+... ..-+
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 000000 0000111100000100000000 0 00 00010 111 111111111000 0122
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC---c-eEEEEccc
Q 002165 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---R-KVILATNI 336 (957)
Q Consensus 261 i~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~---r-kVlVaTni 336 (957)
+.+++..+... +.+||||-.=....+-+-++.. ..++...-+.|+++.++|...++.|... . -.+++|-+
T Consensus 476 LDkLL~~Lk~~----GhRVLIFSQmt~mLDILeDyc~--~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 476 LDKLLPKLKEQ----GHRVLIFSQMTRMLDILEDYCM--LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred HHHHHHHHHhC----CCeEEEeHHHHHHHHHHHHHHH--hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 33444444432 5699999876666655555554 4568889999999999999999998532 3 67899999
Q ss_pred cccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
.+-|||+-..+.||- ||...+.+ .--+|++|+-|.|...+=++|||+++...+
T Consensus 550 GGLGINL~aADtVIl--------yDSDWNPQ-------~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 550 GGLGINLTAADTVIL--------YDSDWNPQ-------VDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccccccEEEE--------ecCCCCch-------hhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999997 88777654 335789999999999999999999976543
No 137
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.08 E-value=1.6e-08 Score=118.14 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=95.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId~ 352 (957)
+.++|+|..++..+.-+-..|.. ..++..+-+.|..+...|..+.+.|.... -.|++|-+.+-|+|+-+.+-||-
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII- 623 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII- 623 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-
Confidence 35999999999988888888864 46799999999999999999999998665 66889999999999999988887
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
|||..+.+.- .+|.-|+=|-|....=.+|||.+....+
T Consensus 624 -------fDPdWNPStD-------~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 624 -------FDPDWNPSTD-------NQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred -------ECCCCCCccc-------hHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 9998877644 6677788888888888899999975443
No 138
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.07 E-value=2.7e-08 Score=118.94 Aligned_cols=326 Identities=19% Similarity=0.194 Sum_probs=175.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccC-CCCcE
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS-ERSKI 116 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~-~~t~I 116 (957)
.+.+.+|.+|.||||||++..++.+. ...+++++.-|+.++.+++.++... .+.+.+-|..-.+.... ...+-
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~---~l~gFv~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA---GLSGFVNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc---CCCcceeeeccccccccccccCe
Confidence 55789999999999999999998775 3458999999999999999988653 22234445422222222 12345
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccc--cccc------cHHHHHHHHHHhcCCCceEEEecccCChHHHHHHH
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHER--SVES------DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER--~~~~------d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f 188 (957)
+++.-+.|.+.... .+.+|++|||||+-.- .+.. .-...+++.++. ..-++|+|-||++... -+++
T Consensus 125 LivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln~~t-vdFl 198 (824)
T PF02399_consen 125 LIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLNDQT-VDFL 198 (824)
T ss_pred EEEEehhhhhcccc---cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCCHHH-HHHH
Confidence 55556666654321 2347999999999730 0111 122334444443 3458999999998554 4455
Q ss_pred hhcCCCceeEEEEec----CCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHH
Q 002165 189 RDLGRGERVEVLAIP----STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDL 264 (957)
Q Consensus 189 ~~~~~~~~v~v~~~~----~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 264 (957)
..+...+.+.++.-. +.......-..-.-.+.....++...+ ..+... .....+... .......+.......+
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDE-NADTSP-TPKHSPDPT-ATAAISNDETTFFSEL 275 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCccc-ccccCC-CcCCCCccc-cccccccchhhHHHHH
Confidence 555444555443221 111111111111111112222220000 000000 000000000 0000001111111222
Q ss_pred HHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccC
Q 002165 265 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTI 343 (957)
Q Consensus 265 v~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdI 343 (957)
...+. .+.+|-||+.|....+.+++..... ...|+.+.|.-+..+ +. .-++ +|++=|.+...|+++
T Consensus 276 ~~~L~-----~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~d---v~---~W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 276 LARLN-----AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLED---VE---SWKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHh-----CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccc---cc---cccceeEEEEeceEEEEecc
Confidence 22222 1458889999999888888887744 467888887655542 21 1345 999999999999999
Q ss_pred CCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhh
Q 002165 344 PKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (957)
Q Consensus 344 p~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~ 403 (957)
.+..+=--.++.|.. ..+. +..+..|+.||.-.......|.-++....
T Consensus 343 ~~~HF~~~f~yvk~~----~~gp--------d~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPM----SYGP--------DMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred chhhceEEEEEecCC----CCCC--------cHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 755432111121111 1111 12345899999977777887777765443
No 139
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=3.7e-08 Score=122.84 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecC-CCCHHHHHHHHhcccCCc-eEEEE
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHS-SVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs-~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
...+.+.+.+..+. .. +|++||+.++.+..+.+++.|... ...+ ...| +.+ +..+.+.|+.+. .||++
T Consensus 631 ~~~~~~~~~i~~~~-~~---~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 631 VYAEEIAKRLEELK-QL---QQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLG 700 (820)
T ss_pred HHHHHHHHHHHHHH-hc---CCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEe
Confidence 33444555555554 22 579999999999999999988643 2334 3333 222 344677787664 99999
Q ss_pred ccccccCccCC--CeeEEEeCCcceeeeecCCCC--------------ccccceeecC--HHhHHHhcCCCCCCC--CCe
Q 002165 334 TNIAESSVTIP--KVAYVIDSCRSLQVFWDVNRK--------------IDSAELVWVS--QSQAEQRRGRTGRTC--DGQ 393 (957)
Q Consensus 334 Tniae~GIdIp--~V~~VId~G~~k~~~yd~~~~--------------~~~l~~~~iS--kas~~QR~GRAGR~~--~G~ 393 (957)
|...-.|||+| +...||-.+++ |.+|.. -+.+...-+. --.+.|-+||.=|.. .|.
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv 776 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA 776 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE
Confidence 99999999997 34555555654 232211 1111111122 245789999999984 576
Q ss_pred EEEe
Q 002165 394 VYRL 397 (957)
Q Consensus 394 ~~~L 397 (957)
++.|
T Consensus 777 v~il 780 (820)
T PRK07246 777 VLIL 780 (820)
T ss_pred EEEE
Confidence 5543
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.01 E-value=1.3e-08 Score=123.45 Aligned_cols=322 Identities=13% Similarity=0.136 Sum_probs=185.2
Q ss_pred hHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHHHHHHhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeee-
Q 002165 29 MSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG- 105 (957)
Q Consensus 29 ~~~Q~~il~~l-~~~~~vII~a~TGSGKTt~lp~~lle~-~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~- 105 (957)
.++|.++++.+ ..+++|+|.+|+|||||...-..++.. ...+++.+.|....+...+..+...++...|..+--..+
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge 1224 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGE 1224 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCc
Confidence 35566666665 467899999999999998777777753 234788888888887777777666555444433222211
Q ss_pred --cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-c---cHHHHHHHHH-HhcCCCceEEEeccc
Q 002165 106 --HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-S---DLVLVCVKQL-LLKKNDLRVVLMSAT 178 (957)
Q Consensus 106 --~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~---d~ll~~lk~l-~~~~~~lklIlmSAT 178 (957)
.+.......+|+++||+.+-.. + ..+.+++.|.||.|.-+-. . ..+.. .+.+ ...-+.+|++.+|..
T Consensus 1225 ~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1225 TSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred cccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehh
Confidence 2233456789999999987544 2 3458999999999953211 0 11111 1111 122356789998887
Q ss_pred C-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeee-------eehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 002165 179 A-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR-------VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (957)
Q Consensus 179 l-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~-------v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (957)
+ ++..+ .+. . ...++..+... +..|.+ +.+.+. ..
T Consensus 1299 lana~d~---ig~---s-~~~v~Nf~p~~--R~~Pl~i~i~~~~~~~~~~----------------------------~~ 1341 (1674)
T KOG0951|consen 1299 LANARDL---IGA---S-SSGVFNFSPSV--RPVPLEIHIQSVDISHFES----------------------------RM 1341 (1674)
T ss_pred hccchhh---ccc---c-ccceeecCccc--CCCceeEEEEEeccchhHH----------------------------HH
Confidence 5 55554 211 1 11122222111 111111 111100 00
Q ss_pred ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC--------------------CCCcEEEEecC
Q 002165 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------------------SSFFKVHILHS 310 (957)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--------------------~~~~~v~~lhs 310 (957)
..+.+..+.. +..+. . .+++.+||+|+++.+..++..+-.. ...+....-|-
T Consensus 1342 ~am~~~~~~a---i~~~a----~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e 1413 (1674)
T KOG0951|consen 1342 LAMTKPTYTA---IVRHA----G-NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHE 1413 (1674)
T ss_pred HHhhhhHHHH---HHHHh----c-CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccccc
Confidence 0111111221 12221 1 2468999999999988766544210 01111222288
Q ss_pred CCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC
Q 002165 311 SVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT 389 (957)
Q Consensus 311 ~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~ 389 (957)
+++..++..+-..|..|+ .|+|...- -.|+-...--+||. | ..+||.... .| ...+-+...|+.|+|.|
T Consensus 1414 ~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm-g---t~~ydg~e~--~~--~~y~i~~ll~m~G~a~~- 1483 (1674)
T KOG0951|consen 1414 GLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM-G---TQYYDGKEH--SY--EDYPIAELLQMVGLASG- 1483 (1674)
T ss_pred ccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe-c---ceeeccccc--cc--ccCchhHHHHHhhhhcC-
Confidence 888888888888898888 77666544 66665543333332 3 345776543 22 23377899999999999
Q ss_pred CCCeEEEeech---hhhhhccCCCCC
Q 002165 390 CDGQVYRLVTK---SFFGTLEDHECP 412 (957)
Q Consensus 390 ~~G~~~~L~s~---~~~~~l~~~~~P 412 (957)
.|+|+.+... ..|..+.....|
T Consensus 1484 -~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1484 -AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred -CccEEEEecCchHHHHHHhccCcCc
Confidence 7888887653 345666665555
No 141
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.99 E-value=7e-10 Score=97.38 Aligned_cols=78 Identities=32% Similarity=0.419 Sum_probs=66.7
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccc
Q 002165 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAE 370 (957)
Q Consensus 292 l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~ 370 (957)
+.+.|.. .++.+..+||+++.++|..+++.|+.+. +|+++|+++++|+|+|++++||. ++++
T Consensus 3 l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~------- 65 (82)
T smart00490 3 LAELLKE--LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLP------- 65 (82)
T ss_pred HHHHHHH--CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCC-------
Confidence 3444542 3588999999999999999999998887 99999999999999999999998 6664
Q ss_pred eeecCHHhHHHhcCCCCCC
Q 002165 371 LVWVSQSQAEQRRGRTGRT 389 (957)
Q Consensus 371 ~~~iSkas~~QR~GRAGR~ 389 (957)
.+.+.+.|++||+||.
T Consensus 66 ---~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 66 ---WSPASYIQRIGRAGRA 81 (82)
T ss_pred ---CCHHHHHHhhcccccC
Confidence 3667779999999996
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.94 E-value=2.2e-07 Score=118.05 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEE
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~--~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVa 333 (957)
..+.+.+.+..+.... +|++|||.++.+..+.+++.|..... ++.+.. . +++...|..+.+.|+.+. .|+++
T Consensus 736 ~~~~la~~i~~l~~~~---~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG 810 (928)
T PRK08074 736 YIEEVAAYIAKIAKAT---KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLG 810 (928)
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3344445555554433 47999999999999999999864322 233322 2 333234667778887665 99999
Q ss_pred ccccccCccCCC--eeEEEeCCcceeeeecCCCC--------------ccccce--eecCHHhHHHhcCCCCCCC--CCe
Q 002165 334 TNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRK--------------IDSAEL--VWVSQSQAEQRRGRTGRTC--DGQ 393 (957)
Q Consensus 334 Tniae~GIdIp~--V~~VId~G~~k~~~yd~~~~--------------~~~l~~--~~iSkas~~QR~GRAGR~~--~G~ 393 (957)
|.....|||+|+ .+.||-.|++ |.+|.. -+.+.. .|..--...|-+||.=|.. .|.
T Consensus 811 ~~sFwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 811 TSSFWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred cCcccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 999999999996 4777776665 333321 111111 1223345689999998884 476
Q ss_pred EEEe
Q 002165 394 VYRL 397 (957)
Q Consensus 394 ~~~L 397 (957)
++.|
T Consensus 887 v~il 890 (928)
T PRK08074 887 VFVL 890 (928)
T ss_pred EEEe
Confidence 5543
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=2.6e-08 Score=119.64 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc--eEEEEcc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATN 335 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r--kVlVaTn 335 (957)
...+.+.+...+.. +.+|||.+.+.+..+.+...|... ++....|++.-...|...+- ..|+ .|.||||
T Consensus 412 ~~Aii~ei~~~~~~----gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATN 482 (925)
T PRK12903 412 WKAVVKEVKRVHKK----GQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQNAREAEIIA---KAGQKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccchhhHHHHHH---hCCCCCeEEEecc
Confidence 33444445555533 469999999999999999999853 45555566653333333332 2343 9999999
Q ss_pred ccccCccCCCee--------EEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeec
Q 002165 336 IAESSVTIPKVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (957)
Q Consensus 336 iae~GIdIp~V~--------~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s 399 (957)
+|++|.||.--. |||-+.+.. |+--=.|-.|||||. .||.+-.+.|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 999999996222 666433221 111127999999999 5787554444
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.91 E-value=1.8e-08 Score=121.66 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCC--CHHHHHHHHhcccCCc-eEEEEccc
Q 002165 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV--DTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 260 li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l--~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
.+.+-+...+.. +.+|||-+.+.+..+.+...|.. .++....|++.- ...|...|-++ +.. .|.||||+
T Consensus 412 AI~~ei~~~~~~----grPVLIgT~SIe~SE~ls~~L~~--~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G~VTIATNM 483 (870)
T CHL00122 412 AIADECLQMHQT----GRPILIGTTTIEKSELLSQLLKE--YRLPHQLLNAKPENVRRESEIVAQA--GRKGSITIATNM 483 (870)
T ss_pred HHHHHHHHHHhc----CCCEEEeeCCHHHHHHHHHHHHH--cCCccceeeCCCccchhHHHHHHhc--CCCCcEEEeccc
Confidence 344444444433 46999999999999999999984 445566677652 23444433333 223 89999999
Q ss_pred cccCccCC
Q 002165 337 AESSVTIP 344 (957)
Q Consensus 337 ae~GIdIp 344 (957)
|++|.||-
T Consensus 484 AGRGTDI~ 491 (870)
T CHL00122 484 AGRGTDII 491 (870)
T ss_pred cCCCcCee
Confidence 99999874
No 145
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.85 E-value=2e-08 Score=113.10 Aligned_cols=106 Identities=24% Similarity=0.296 Sum_probs=90.9
Q ss_pred CcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcc
Q 002165 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (957)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~ 355 (957)
.++||-+=|++.+|.+.++|. ..++++..+||.+..-+|.++++..+.|. .|||.-|.+-.|+|+|.|..|.-
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~--e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI---- 520 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLK--ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI---- 520 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHH--hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE----
Confidence 589999999999999999998 45699999999999999999999999999 99999999999999999999874
Q ss_pred eeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEe
Q 002165 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRL 397 (957)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L 397 (957)
.|.... .+ .-|-.|.+|-+|||.|.-.|+++..
T Consensus 521 ----lDADKe--GF---LRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 521 ----LDADKE--GF---LRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred ----eecCcc--cc---ccccchHHHHHHHHhhccCCeEEEE
Confidence 443321 11 2255667999999999999998854
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.77 E-value=1.3e-07 Score=114.62 Aligned_cols=131 Identities=8% Similarity=0.003 Sum_probs=84.6
Q ss_pred EEEEcCCCCcHHHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcC-CccCCeeEEeee---------cccccC
Q 002165 45 TLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGEVGYHIG---------HSKHLS 111 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~l---le~~~~~Iivt~Prrlaa~~va~rva~e~~-~~lg~~Vgy~v~---------~~~~~~ 111 (957)
.|..+.+|||||..+.+.+ +..+. .++++.|.--++.++.+++...++ .. .+.|+-+ +.....
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~---v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGD---VAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCc---EEEECCCCCHHHHHHHHHHHhC
Confidence 3455557999997776665 44443 577777877778899999988765 22 2223321 112235
Q ss_pred CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccccc------HHHHHHHHHHhcCCCceEEEecccCChHHHH
Q 002165 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD------LVLVCVKQLLLKKNDLRVVLMSATADITKYR 185 (957)
Q Consensus 112 ~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d------~ll~~lk~l~~~~~~lklIlmSATld~~~~~ 185 (957)
...+|+++|-.-+. .++.++++|||||-|+-+...+ .... -.+.....+..+|+.|||.+.+.+.
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdv--A~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREV--ALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHH--HHHHHHHcCCcEEEECCCCCHHHHH
Confidence 66899999975443 2455999999999997443332 1111 1122334678999999999988776
Q ss_pred HHH
Q 002165 186 DYF 188 (957)
Q Consensus 186 ~~f 188 (957)
..-
T Consensus 310 ~~~ 312 (665)
T PRK14873 310 LVE 312 (665)
T ss_pred HHh
Confidence 543
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=98.75 E-value=2.8e-08 Score=116.34 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=70.4
Q ss_pred cEEEEeCCHHHHHHHHHH-----------hcCCCCCcEEEEec--CCCCHHHHHHHHh---cccCCc-eEEEEccccccC
Q 002165 278 SILVFLPTYYALEQQWHL-----------MKPLSSFFKVHILH--SSVDTEQALMAMK---ICKSHR-KVILATNIAESS 340 (957)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~-----------L~~~~~~~~v~~lh--s~l~~~er~~i~~---~f~~~r-kVlVaTniae~G 340 (957)
+.+-|+.+.++-.++++. |.....++.+..=| |.|...+|...+. .|.... |||----.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 345666665544333332 33333455565555 8898888865543 345555 888888899999
Q ss_pred ccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEE
Q 002165 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVY 395 (957)
Q Consensus 341 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~ 395 (957)
||+|..+-||- ||+...+-.. .|-+||.-|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~smVDI----------VQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSMVDI----------VQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchhHHHH----------HHHHHHHHHhCcCCcc
Confidence 99999999997 9998866555 9999999999887743
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.74 E-value=1.8e-06 Score=103.87 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=78.1
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc----eEEEEccccccCccCCCeeEEEeCCcce
Q 002165 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR----KVILATNIAESSVTIPKVAYVIDSCRSL 356 (957)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r----kVlVaTniae~GIdIp~V~~VId~G~~k 356 (957)
|.+.....+.++.+.+.... ++.+..+||.++..+|+.+++.|.+.. -.+++|-+.+.||++=|..-||-
T Consensus 599 v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil----- 672 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL----- 672 (776)
T ss_pred EEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----
Confidence 33444555555555554444 899999999999999999999996432 45677888999999998888887
Q ss_pred eeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechh
Q 002165 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~ 401 (957)
||+..+...- .+|+=|+=|-|-.++-..|||.+..
T Consensus 673 ---~D~dWNPa~d-------~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 673 ---FDPDWNPAVD-------QQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred ---eCCCCCchhH-------HHHHHHhccCCCcceEEEEEeecCC
Confidence 9988876543 4555566666666788899998854
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=4.7e-07 Score=109.54 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=73.2
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHH--HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~--lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
+..|-+.++--+++-.+.=++--|....||-|||+. +|.++.....+.|-|+.+..-+|..-++.+...+. -+|-+|
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~-~LGLtv 157 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR-FLGLSV 157 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH-HhCCeE
Confidence 455666667677777776677779999999999944 44544433333444444444444444444333222 345666
Q ss_pred EEeeecc----cccCCCCcEEEEcHHHH-----HHHHHcc--CCCcCcceEEEEccccc
Q 002165 101 GYHIGHS----KHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVHE 148 (957)
Q Consensus 101 gy~v~~~----~~~~~~t~Ivv~T~g~L-----l~~l~~~--~l~l~~~~~VIIDEaHE 148 (957)
|...... ++..=.++|+|+|..-| .+.|... ......+.+.||||||.
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 6543211 11223689999998655 4444321 11223788899999984
No 150
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.68 E-value=4.9e-07 Score=110.37 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=101.0
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC---Cc-eEEEEccccccCccCCCeeEE
Q 002165 274 DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYV 349 (957)
Q Consensus 274 ~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~---~r-kVlVaTniae~GIdIp~V~~V 349 (957)
.++.+||||-.=..-..-++++|. ..++..--+.|++..+.|+..++.|.. .+ -.|+||-+.+-|||+-..+.|
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~--~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTV 774 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLS--LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTV 774 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHH--HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceE
Confidence 346799999999999999999998 455788889999999999999998843 34 889999999999999999998
Q ss_pred EeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhhh-ccCCCCCchhcCCHHHHHHHHh
Q 002165 350 IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGT-LEDHECPAILRLSLRLQVLLIC 427 (957)
Q Consensus 350 Id~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~~-l~~~~~PEI~r~~L~~~iL~l~ 427 (957)
|. ||...+.+.- -+|+=|+-|.|-...=.+|||+|+..+++ |-+-. -+..-|+..|++..
T Consensus 775 II--------FDSDWNPQND-------LQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 775 II--------FDSDWNPQND-------LQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQRM 835 (1373)
T ss_pred EE--------eCCCCCcchH-------HHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHhh
Confidence 87 8877765543 24455666666666677999999977653 21100 12345777777763
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.68 E-value=1.5e-05 Score=95.89 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC----C-ceEEEEccccccCccC-------
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS----H-RKVILATNIAESSVTI------- 343 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~----~-rkVlVaTniae~GIdI------- 343 (957)
+|.+||-+++++.++.+++.|.... .+.+ ...|..+. +...++.|+. + ..||++|+.+-+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l-~~~~-l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGI-PAEI-VIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhc-CCCE-EEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 5799999999999999999986422 2333 34454432 2234455543 4 5999999999999999
Q ss_pred -C--CeeEEEe
Q 002165 344 -P--KVAYVID 351 (957)
Q Consensus 344 -p--~V~~VId 351 (957)
| .++.||-
T Consensus 546 ~~G~~Ls~ViI 556 (636)
T TIGR03117 546 DKDNLLTDLII 556 (636)
T ss_pred CCCCcccEEEE
Confidence 3 4677765
No 152
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.51 E-value=1.1e-05 Score=90.35 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEe
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId 351 (957)
+.+.|||+.-..-.+.+...+.+ .++..+-+.|..+..+|....+.|.... --|++-..+.+|+|+...+.||-
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~--r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNK--RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHH--cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 56899999999888888888873 4577888899999999999999997544 44677788999999999999996
No 153
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.35 E-value=2.4e-07 Score=101.44 Aligned_cols=55 Identities=31% Similarity=0.748 Sum_probs=48.5
Q ss_pred CccccccccccccccCCCCCCCCCcCCC-CcccccccccccccCCCCCCCCCCCCC
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~-~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
..+..+||||++|.|++||.|.|+|+.. .+.+.|.||+..|.|.+|..|.|.|..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCC
Confidence 6778899999999999999999999863 345689999999999999999999977
No 154
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.31 E-value=3.9e-07 Score=102.94 Aligned_cols=61 Identities=31% Similarity=0.634 Sum_probs=51.5
Q ss_pred CCCcccccccccc-ccccCC-CCCCCCCcCCC----------------CcccccccccccccCCCCCCCCCCCCCCCCC
Q 002165 732 ETPGEAPLCVYFI-NGSCNR-GTGCPFSHSLQ----------------AKRPACKFFYSLQGCRNGDSCIFSHDLGQPV 792 (957)
Q Consensus 732 ~~~~~~~~C~~f~-~G~C~~-G~~C~f~H~~~----------------~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~~ 792 (957)
..-.++++|++|. .|.|++ |++|+|.|... .++.+|.+|...|.|+||.+|+|.|......
T Consensus 127 p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 127 PERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 3456889999999 699999 99999999862 2356899998889999999999999986443
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.24 E-value=6.6e-05 Score=92.07 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=82.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHhc-CCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEe
Q 002165 276 EKSILVFLPTYYALEQQWHLMK-PLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~-~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId 351 (957)
+.++||||.-+..+.-+.+-|. ...+.+.-..+.|+.++.+|.++.+.|.++. -.+++|-+.+-|+|+-+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 4689999999998887766654 3344556668899999999999999998764 56778999999999999999995
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhh
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~ 402 (957)
++...+...- -+|+-|+-|.|..+-=-+|||+++..
T Consensus 1420 --------vEHDWNPMrD-------LQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1420 --------VEHDWNPMRD-------LQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred --------EecCCCchhh-------HHHHHHHHhhcCceeeeeeeehhccc
Confidence 4433332221 24555666666555566899988643
No 156
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=1.1e-05 Score=77.68 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=66.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--------CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~ 112 (957)
+++.++|.|++|+|||+.+-.++.+. ....+.+..|.......+...+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 56789999999999999888887764 33446666665555667777777776644322
Q ss_pred CCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 113 ~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
-.|...+.+.+... +.-....+|||||+|.-. . +-.+..++.+.. ...+++|+.+-.
T Consensus 69 -----~~~~~~l~~~~~~~-l~~~~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 -----RQTSDELRSLLIDA-LDRRRVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp -----TS-HHHHHHHHHHH-HHHCTEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred -----cCCHHHHHHHHHHH-HHhcCCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 12333333333221 001133799999999522 3 445555666554 666777766544
No 157
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.97 E-value=0.00024 Score=84.12 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=87.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId~ 352 (957)
+.+||||-.--.-..-+-..|. ..++...-|.|......|+.+++.|.... -.|++|-..+-||++-..+.||-
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~--~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi- 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLD--TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII- 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHH--hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE-
Confidence 4699999876665555555555 34578889999999999999999997665 67899999999999999999986
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
||..-+.- ---+|.-|+-|.|.++|=.+|||+++...+
T Consensus 854 -------hD~dFNP~-------dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 854 -------HDIDFNPY-------DDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred -------eecCCCCc-------ccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 55443322 223667899999999999999999986443
No 158
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=85.53 Aligned_cols=100 Identities=22% Similarity=0.414 Sum_probs=69.0
Q ss_pred CccccccccccccccCCCCCCCCCcCCCCc---ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQAK---RPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAA 810 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~---~~~C~~f~~~g~C~~g~~C~~~H~~~~~~~~~~~~~~~~~~~~~~~~ 810 (957)
.....+|++|..|.|+.|..|.|+|..+.. .++|++|...|.|..|..|.|.|.. .....+.|.-..+
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~d----p~~~~~~~~~~~~----- 171 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHID----PDSFAGNCDQYSG----- 171 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccC----cccccccccccCc-----
Confidence 456788999999999999999999997543 5789999999999999999999987 2223444411111
Q ss_pred cccccccCCCCCceeeccCccccccccccccCC
Q 002165 811 SLLRLFPTSSDGSILLLDDTDMHFSANLACLYD 843 (957)
Q Consensus 811 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 843 (957)
. ..++++.+..+..-...+......+.+..|-
T Consensus 172 ~-~~~f~p~g~~c~~~H~~~~~~~~~~p~~~y~ 203 (285)
T COG5084 172 A-TYGFCPLGASCKFSHTLKRVSYGSSPCGNYT 203 (285)
T ss_pred c-cccccCCCCccccccccccccccccccccCc
Confidence 1 4456677766655433443333333444444
No 159
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.94 E-value=7.2e-05 Score=82.82 Aligned_cols=136 Identities=22% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH---hcCCC----cEEEeccHHHHHHHHHHHHHhhcCC-ccCCeeEEeeecc-----
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME----PILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYHIGHS----- 107 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll---e~~~~----~Iivt~Prrlaa~~va~rva~e~~~-~lg~~Vgy~v~~~----- 107 (957)
..+..+++-++|+|||.+...++. +.... .++|+.|..+. .+....+...... .+ ..+-|. +..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~~~~~~-~v~~~~-~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWFDPDSL-RVIIYD-GDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHSGT-TS--EEEES-SSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhccccccccc-cccccc-cccccccc
Confidence 346789999999999966655543 33322 36666776443 3444444443321 11 112221 222
Q ss_pred -cccCCCCcEEEEcHHHHH--------HHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 108 -KHLSERSKIVFKTAGVLL--------DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 108 -~~~~~~t~Ivv~T~g~Ll--------~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.......+++++|.+.+. ..+.. .++++|||||+|. .-+.+.. ..+.+.... ....++||||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~-~k~~~s~--~~~~l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHR-LKNKDSK--RYKALRKLR-ARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGG-GTTTTSH--HHHHHHCCC-ECEEEEE-SS
T ss_pred cccccccceeeecccccccccccccccccccc-----ccceeEEEecccc-ccccccc--ccccccccc-cceEEeeccc
Confidence 233457899999999998 22221 2699999999994 3222211 112222222 4577889999
Q ss_pred CChHHHHHHH
Q 002165 179 ADITKYRDYF 188 (957)
Q Consensus 179 ld~~~~~~~f 188 (957)
+-.+...+++
T Consensus 172 P~~n~~~dl~ 181 (299)
T PF00176_consen 172 PIQNSLEDLY 181 (299)
T ss_dssp -SSSGSHHHH
T ss_pred cccccccccc
Confidence 6433333333
No 160
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=97.94 E-value=1.1e-05 Score=93.17 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=85.1
Q ss_pred cccccccccccccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc-cccccc
Q 002165 736 EAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVAN-AASLLR 814 (957)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 814 (957)
-.+.|+|+.. |. ++.|.|.|+.. ...|+-| -+|++++.|.|+|+....-.-+....|.-...... .+.++.
T Consensus 543 ~l~~Cky~~~--Ct-~a~Ce~~HPta--a~~~~s~---p~k~fa~~~~ks~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ 614 (681)
T KOG3702|consen 543 ILTRCKYGPA--CT-SAECEFAHPTA--AENAKSL---PNKKFASKCLKSHPGCKFGKKCTASDCNYSHAGRRIPVQPTR 614 (681)
T ss_pred eeccccCCCc--CC-chhhhhcCCcc--hhhhhcc---ccccccccceecccccccccccccccCcccccCCCCCCcccc
Confidence 3466999966 88 78999999832 2338777 56888888888888865544444444433332221 111111
Q ss_pred cccCCCCCceeeccCccccccccccccCCCccccccCCCCCccccccccchhHHhhccccccchhcccCCCCCCCCccee
Q 002165 815 LFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVK 894 (957)
Q Consensus 815 ~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (957)
+-|. -....+..+|.|++.|+.+.|. ++||..|++++.|.| +..
T Consensus 615 ip~~-----------~~~~ti~~~CrY~pnCrnm~C~--------------------F~HPk~cRf~~~c~~-----~~s 658 (681)
T KOG3702|consen 615 IPPP-----------FPGGTIRGLCRYRPNCRNMQCK--------------------FYHPKTCRFNTNCPN-----NPS 658 (681)
T ss_pred CCCC-----------CCCCCccccceeccCcCCcccc--------------------ccCCccccccccCCC-----Ccc
Confidence 1111 1123455689999999999999 999999999999998 899
Q ss_pred EEEecCCc
Q 002165 895 CVLWYPSL 902 (957)
Q Consensus 895 ~~~~~~~~ 902 (957)
|+||++-.
T Consensus 659 c~fYh~r~ 666 (681)
T KOG3702|consen 659 CTFYHERP 666 (681)
T ss_pred cccccCCc
Confidence 99999944
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.90 E-value=0.00016 Score=91.79 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=79.9
Q ss_pred eEEEEcCCCCcHHH---HHHHHHHhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec----cccc-CCCC
Q 002165 44 VTLIVGETGCGKSS---QVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH----SKHL-SERS 114 (957)
Q Consensus 44 ~vII~a~TGSGKTt---~lp~~lle~-~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~----~~~~-~~~t 114 (957)
.-+|.=-||||||. -+...+++. ....|+++.-|+-+-.|+.+.+...-.... . +. ...- .... ....
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~-~~-~~~s~~~Lk~~l~~~~~ 351 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-N-DP-KAESTSELKELLEDGKG 351 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhh-h-cc-cccCHHHHHHHHhcCCC
Confidence 58899999999993 344445554 335788999999988888777655321111 1 01 1000 0111 2356
Q ss_pred cEEEEcHHHHHHHHHcc-CC-CcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 115 KIVFKTAGVLLDEMRDR-GL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 115 ~Ivv~T~g~Ll~~l~~~-~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
.|+|+|-+.|-...... .. .-.+==+||+|||| |+-.... -..++..+ ++...+++|.|+
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~-~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGEL-AKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred cEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHH-HHHHHHHh---ccceEEEeeCCc
Confidence 89999998887776543 11 11244578999999 8866544 33334433 447899999996
No 162
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.89 E-value=0.0001 Score=91.19 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCCh-----HHHHH
Q 002165 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI-----TKYRD 186 (957)
Q Consensus 112 ~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~-----~~~~~ 186 (957)
....|+++||.+|..-+..+.+++.+++.||||||| |...+--.--+++.+...+++.-|.+|||.+.. +.+.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 457899999999999998888888899999999999 776655444556666667788889999999754 45555
Q ss_pred HHhhc
Q 002165 187 YFRDL 191 (957)
Q Consensus 187 ~f~~~ 191 (957)
....+
T Consensus 85 vmk~L 89 (814)
T TIGR00596 85 KMRNL 89 (814)
T ss_pred HHHHh
Confidence 55544
No 163
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.89 E-value=2.9e-06 Score=58.08 Aligned_cols=24 Identities=38% Similarity=1.050 Sum_probs=15.1
Q ss_pred cccccccccc-cccCCCCCCCCCcC
Q 002165 736 EAPLCVYFIN-GSCNRGTGCPFSHS 759 (957)
Q Consensus 736 ~~~~C~~f~~-G~C~~G~~C~f~H~ 759 (957)
++++|++|.. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4567777774 77777777777775
No 164
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.87 E-value=4.3e-05 Score=79.59 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 28 i~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+.+-|.+++..+..+ +.++|.|+.|+||||.+-... ++....+|+++.|+.-++..+.+... ..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~----~~-------- 69 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG----IE-------- 69 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT----S---------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC----cc--------
Confidence 467899999998644 478999999999997665432 22223577777777777766665521 11
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccC----CCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~----l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
..|-..++....... ......++|||||+- +++...+..+++.+. ..+.|+|++-=+
T Consensus 70 --------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~--~~~~klilvGD~ 130 (196)
T PF13604_consen 70 --------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAK--KSGAKLILVGDP 130 (196)
T ss_dssp --------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS---T-T-EEEEEE-T
T ss_pred --------------hhhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHH--hcCCEEEEECCc
Confidence 011111111000000 002367899999998 556555555555432 235688877544
No 165
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.78 E-value=4.1e-06 Score=87.47 Aligned_cols=56 Identities=38% Similarity=0.953 Sum_probs=43.7
Q ss_pred ccccccccccccccCCCCCCCCCcCCCC-------------c------------------------ccccccccc-----
Q 002165 735 GEAPLCVYFINGSCNRGTGCPFSHSLQA-------------K------------------------RPACKFFYS----- 772 (957)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~~C~f~H~~~~-------------~------------------------~~~C~~f~~----- 772 (957)
.+..+|-||..|.|.+|+.|.|||+... . ..+|+||.-
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~ 169 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENG 169 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC
Confidence 4677899999999999999999999811 0 117999942
Q ss_pred -cc---cCCCCC-CCCCCCCCCC
Q 002165 773 -LQ---GCRNGD-SCIFSHDLGQ 790 (957)
Q Consensus 773 -~g---~C~~g~-~C~~~H~~~~ 790 (957)
.| .|.+|. .|.|.|.+..
T Consensus 170 kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 170 KYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred CccceeECCCCCCeeeeeecCCc
Confidence 22 499975 9999998844
No 166
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.78 E-value=5.1e-06 Score=56.89 Aligned_cols=26 Identities=38% Similarity=0.833 Sum_probs=20.5
Q ss_pred cccccccccccccCCCCCCCCCCCCC
Q 002165 763 KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 763 ~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
++.+|++|...|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 57899999888999999999999973
No 167
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.76 E-value=2.2e-05 Score=82.73 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=68.6
Q ss_pred ccccccccc-ccccCC---CCCCCCC---cCC----------CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002165 736 EAPLCVYFI-NGSCNR---GTGCPFS---HSL----------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSF 798 (957)
Q Consensus 736 ~~~~C~~f~-~G~C~~---G~~C~f~---H~~----------~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~~~~~~~~ 798 (957)
..++|.-|. .|.|.+ |+.|.|+ |.. ..++.||+.|...|.|.+|.+|.|.|..++......-.
T Consensus 229 ~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~ 308 (351)
T COG5063 229 NPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA 308 (351)
T ss_pred CHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccccccc
Confidence 348899998 699999 9999999 986 23477999999999999999999999887654332210
Q ss_pred CCCCCCcccccccccccccCCCCCceeeccCcccccccc
Q 002165 799 TCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSAN 837 (957)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~ 837 (957)
..---.+..........+|.+++ +-..++.+++++++.
T Consensus 309 ~~~y~~~~crt~~~~g~~p~g~~-~c~~~dkkn~~~s~~ 346 (351)
T COG5063 309 SLGYLDGPCRTRAKGGAFPSGGA-VCKSFDKKNLDFSVK 346 (351)
T ss_pred cccccccccccccccCccCCCCc-hhhccccchhhhhhh
Confidence 00011111122333344666655 445577888877654
No 168
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00031 Score=80.22 Aligned_cols=125 Identities=18% Similarity=0.305 Sum_probs=79.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc-------CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~-------~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t 114 (957)
++++++||||+||||.+..+.... +.. .++-+-+-|.+|....+.+++.+|.++ .+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Ee--------------
Confidence 589999999999998877664321 222 355556667887777777777665443 11
Q ss_pred cEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc-CCC-ceEEEecccCChHHHHHHHhhc
Q 002165 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND-LRVVLMSATADITKYRDYFRDL 191 (957)
Q Consensus 115 ~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-~~~-lklIlmSATld~~~~~~~f~~~ 191 (957)
.-++.-+...+.. ..++++||||++. |+......+.-++.++.. .++ -.++++|||...+.+.+.|...
T Consensus 239 ---~~~~~~l~~~L~~----~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 239 ---IESFKDLKEEITQ----SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ---eCcHHHHHHHHHH----hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1134444444432 2389999999999 765432234444444443 334 4779999999888888777653
No 169
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.68 E-value=0.00016 Score=75.25 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH----HHhcCCCcEEEecc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQP 76 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~----lle~~~~~Iivt~P 76 (957)
|.+..|..+++++.+++.+++.||.|||||+..... +.+....+|+++-|
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 778999999999999999999999999999544333 33444568888877
No 170
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.68 E-value=1.8e-05 Score=79.20 Aligned_cols=57 Identities=37% Similarity=0.871 Sum_probs=29.7
Q ss_pred CCCCCccccccccccccccCCCCCCCCCcCCCCcc-cccccccccccCCCCCCCCCCCCC
Q 002165 730 GSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKR-PACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 730 ~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~-~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
+...|.+..+|.-|++|.|.+.+.|..+|..++++ +.|+|| ..|.|.+.. |+|.|--
T Consensus 226 fvheptrkticpkflngrcnkaedcnlsheldprripacryf-llgkcnnpn-cryvhih 283 (377)
T KOG1492|consen 226 FVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYF-LLGKCNNPN-CRYVHIH 283 (377)
T ss_pred eeccccccccChHHhcCccCchhcCCcccccCccccchhhhh-hhccCCCCC-ceEEEEe
Confidence 34444444455555555555555555555554332 345555 555555443 5555543
No 171
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.66 E-value=2.7e-05 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.970 Sum_probs=18.3
Q ss_pred cccccccccccccCCCCCCCCCcC
Q 002165 736 EAPLCVYFINGSCNRGTGCPFSHS 759 (957)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~ 759 (957)
+..+|++|.+|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 445688887788888888888886
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.65 E-value=0.00016 Score=75.29 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=78.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh---cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle---~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++++++||||+||||.+..+... .+.+ .++.+-+.|+.|....+.+++.++.++-. .+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcch----------
Confidence 46899999999999888766432 2332 47778888999999999999987755311 01000
Q ss_pred EcHHHHH-HHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEecccCChHHHH
Q 002165 119 KTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYR 185 (957)
Q Consensus 119 ~T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-~~~lklIlmSATld~~~~~ 185 (957)
.|.-++ +.+..- ...++++|+||-+- |+....-++.-++.+... .++--+++||||...+.+.
T Consensus 67 -~~~~~~~~~l~~~--~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 -DPAEIAREALEKF--RKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -CHHHHHHHHHHHH--HHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -hhHHHHHHHHHHH--hhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 133333 233211 11268999999998 666554444445444433 5667889999998655543
No 173
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.59 E-value=0.00031 Score=84.92 Aligned_cols=136 Identities=19% Similarity=0.239 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 29 ~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+.|+.++.....++.++|+|++|+||||.+-..+. +.. ...|+++.|+.-||..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 478999999999999999999999999988766543 212 23688889988888877776654321 1110
Q ss_pred eeecccccCCCCcEEEEcHHHHHHHHH------ccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHSKHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~~~~~~~t~Ivv~T~g~Ll~~l~------~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+...........|--.|+.... ...-....+++|||||+- +++......+++. ..++.|+|++.
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 00000000011222223322110 011122367999999998 6776666555554 35778999876
Q ss_pred cc
Q 002165 177 AT 178 (957)
Q Consensus 177 AT 178 (957)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 44
No 174
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.57 E-value=0.0003 Score=77.80 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.8
Q ss_pred hHHHHHH----HHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 29 MSLREKI----VEKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 29 ~~~Q~~i----l~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
++.|.++ .+.+.+++.+++.||||+|||..+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 8889994 455668899999999999999554433
No 175
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.57 E-value=0.0003 Score=77.80 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.8
Q ss_pred hHHHHHH----HHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 29 MSLREKI----VEKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 29 ~~~Q~~i----l~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
++.|.++ .+.+.+++.+++.||||+|||..+...
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 8889994 455668899999999999999554433
No 176
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.00074 Score=76.05 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh----cCCC--cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCc
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle----~~~~--~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~ 115 (957)
++++.++||||-||||.+...... .+.. .||-+-.-|+.|...-+..++.+|.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 689999999999999887765432 3333 467778889999999999999888654
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC-ceEEEecccCChHHHHHHHhhc
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND-LRVVLMSATADITKYRDYFRDL 191 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~-lklIlmSATld~~~~~~~f~~~ 191 (957)
.++-+|.=|...+.. +.++++|.||=+- |+........-++.+.....+ --.+++|||...+.+.+.+...
T Consensus 264 ~vv~~~~el~~ai~~----l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIEA----LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHHH----hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 234456666666552 4588999999999 887777777777777665544 4567899999888888777653
No 177
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.56 E-value=3.6e-05 Score=77.19 Aligned_cols=58 Identities=31% Similarity=0.787 Sum_probs=49.8
Q ss_pred cccccccc-ccccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCC
Q 002165 737 APLCVYFI-NGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSS 796 (957)
Q Consensus 737 ~~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~~~~~~ 796 (957)
...|+||. +|-|-+|..|+|.|. +.+..+|.-| ..|.|.+.+.|-.+|..+.++-+..
T Consensus 206 avycryynangicgkgaacrfvhe-ptrkticpkf-lngrcnkaedcnlsheldprripac 264 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHE-PTRKTICPKF-LNGRCNKAEDCNLSHELDPRRIPAC 264 (377)
T ss_pred eeEEEEecCCCcccCCceeeeecc-ccccccChHH-hcCccCchhcCCcccccCccccchh
Confidence 35699999 799999999999997 4456689999 9999999999999999987765543
No 178
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.56 E-value=0.00043 Score=83.55 Aligned_cols=135 Identities=22% Similarity=0.282 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcC----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~----~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
..|+.++.....++.++|+|+.|+||||.+-..+. +.. ..+|+++.|+--||..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 68999999999999999999999999987766542 222 13689999988888877776654321 11100
Q ss_pred eeecccccCCCCcEEEEcHHHHHHHHH------ccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHSKHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~~~~~~~t~Ivv~T~g~Ll~~l~------~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
........+...|--.|+.... ...-....+++|||||+= +++...+..+++. .++..|+|++.
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 0000011112333333332211 001123378999999997 6776666555553 35678888875
Q ss_pred cc
Q 002165 177 AT 178 (957)
Q Consensus 177 AT 178 (957)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 44
No 179
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.56 E-value=0.00036 Score=86.10 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNI 336 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTni 336 (957)
.+..+.+-+..++.. +.+|||-+.+.+.-+.+.+.|... ++..-.|++.....|...+-++-+.| .|-||||+
T Consensus 613 K~~Aii~ei~~~~~~----GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~EAeIVA~AG~~G-aVTIATNM 685 (1112)
T PRK12901 613 KYNAVIEEITELSEA----GRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKEAEIVAEAGQPG-TVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHC----CCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhHHHHHHhcCCCC-cEEEeccC
Confidence 344555556666643 469999999999999999999843 34434445543344444343332221 89999999
Q ss_pred cccCccCC--------CeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeec
Q 002165 337 AESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (957)
Q Consensus 337 ae~GIdIp--------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s 399 (957)
|++|-||. |=-+||-+.+.. |+---.|-.|||||. .||.+-.+.|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 99999987 223555432221 222338999999999 5788654444
No 180
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.53 E-value=0.022 Score=64.59 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=75.8
Q ss_pred cEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEeCCc
Q 002165 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
+.|||..-..-.+.+.-.|. ..|+..+.|-|+|++..|...++.|++.- -.+++-...+..+++-....|..
T Consensus 640 KsIVFSQFTSmLDLi~~rL~--kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm--- 714 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLG--KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM--- 714 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhh--ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe---
Confidence 44555544444444444454 45789999999999999999999998653 55667777777778888888876
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~ 401 (957)
.||..+...- -++.-|+-|.|.-+|=+++|++-+.
T Consensus 715 -----mDPWWNpaVe-------~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 715 -----MDPWWNPAVE-------WQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred -----ecccccHHHH-------hhhhhhHHhhcCccceeEEEeehhc
Confidence 6776654322 2345677778888898999987654
No 181
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.50 E-value=3.7e-05 Score=82.44 Aligned_cols=53 Identities=25% Similarity=0.578 Sum_probs=44.3
Q ss_pred cccccccccccccCCCCC-CCCCcCCCC------cccccccccccccCCCCCCCCCCCCCCC
Q 002165 736 EAPLCVYFINGSCNRGTG-CPFSHSLQA------KRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (957)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~-C~f~H~~~~------~~~~C~~f~~~g~C~~g~~C~~~H~~~~ 790 (957)
.-++||-|++|.|++|+. |+|.|+... +-.-|.-| ++|.|.+-. |+|.|+...
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds-~kgrCsR~n-CkylHpp~h 95 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDS-QKGRCSREN-CKYLHPPQH 95 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEecc-ccCccCccc-ceecCCChh
Confidence 568999999999999999 999998521 22359988 999999876 999998754
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.50 E-value=0.00023 Score=62.02 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHhcC------CCcEEEeccHHHHHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN------MEPILCTQPRRFAVVAVAKMV 88 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle~~------~~~Iivt~Prrlaa~~va~rv 88 (957)
++..++.++|.||.|||||+.+...+.+.. .++|+++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 555567788899999999976666554332 568999999999999998887
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00028 Score=75.43 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=43.0
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccH
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPR 77 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Pr 77 (957)
--|....|...+.++.++..+++.||+|||||+....+.+ +....+|+++-|.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 3678899999999999999999999999999976655444 3345678888774
No 184
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.43 E-value=0.00057 Score=82.95 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC-C---ceEEEEccccccCccCCCeeEE
Q 002165 274 DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS-H---RKVILATNIAESSVTIPKVAYV 349 (957)
Q Consensus 274 ~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~-~---rkVlVaTniae~GIdIp~V~~V 349 (957)
..+++||.|+.-..-..-+-.+|. ..++.-.-+.|....++|-..++.|.. + ...|++|-....|+|+-..+.|
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~--~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtv 801 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQ--IREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTV 801 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHh--hhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceE
Confidence 346899999987776666777776 455778888999999999988888843 2 3899999999999999998888
Q ss_pred EeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCC---CCCCeEEEeechhhh
Q 002165 350 IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR---TCDGQVYRLVTKSFF 403 (957)
Q Consensus 350 Id~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR---~~~G~~~~L~s~~~~ 403 (957)
|- ||...+.... .|+.-||-| ...-.++||.+-..+
T Consensus 802 ii--------fdsdwnp~~d----------~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 802 II--------FDSDWNPHQD----------LQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred EE--------ecCCCCchhH----------HHHHHHHHHhhchhheeeeeeehhhHH
Confidence 87 8877665544 555555555 466778898886444
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.42 E-value=0.00069 Score=84.04 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=77.7
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH--HhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l--le~~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
...+.+-|.+++..+..++.++|+|+.|+||||.+-.++ ++... ..|+++.|+--||..+ ++..|...
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~a---- 392 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLTA---- 392 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCcc----
Confidence 467889999999999999999999999999998765443 22222 4677778877776543 33322110
Q ss_pred EEeeecccccCCCCcEEEEcHHHHHHHHHcc-----CCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 101 gy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~-----~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.|-..|+...... .-.....++|||||++ +++...+..+++. ..++.|+|++
T Consensus 393 ------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rlilv 449 (720)
T TIGR01448 393 ------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLLLV 449 (720)
T ss_pred ------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEEEE
Confidence 1111111110000 0012368999999999 6676666555553 3567888887
Q ss_pred ccc
Q 002165 176 SAT 178 (957)
Q Consensus 176 SAT 178 (957)
.=+
T Consensus 450 GD~ 452 (720)
T TIGR01448 450 GDT 452 (720)
T ss_pred Ccc
Confidence 655
No 186
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=97.39 E-value=7.7e-05 Score=82.03 Aligned_cols=91 Identities=24% Similarity=0.445 Sum_probs=70.2
Q ss_pred HHHHHhhhhccccCCCCCCCCCCCCC-cccccccccc-ccccCCCCCCCCCcCC-CCcccccccccccccCCCCCCCCCC
Q 002165 709 IKEIRVQYVEDVSGNQDKAVNGSETP-GEAPLCVYFI-NGSCNRGTGCPFSHSL-QAKRPACKFFYSLQGCRNGDSCIFS 785 (957)
Q Consensus 709 ike~r~~~~~~~~~~~~~~~~~~~~~-~~~~~C~~f~-~G~C~~G~~C~f~H~~-~~~~~~C~~f~~~g~C~~g~~C~~~ 785 (957)
-+.+.+.+.++-|..++.|.+.++.. .+...|.||. .|.|.+|..|.|.|.. +.+...|++| ..|.|+.|+.|++.
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~-~~g~c~~g~~c~~~ 154 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY-KEGFCRGGPSCKKR 154 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCChhhhhhccchh-hhccCCCcchhhhh
Confidence 34566778888898888888777543 3444588777 6999999999999986 5667789999 99999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 002165 786 HDLGQPVLPSSSFTC 800 (957)
Q Consensus 786 H~~~~~~~~~~~~~~ 800 (957)
|.....-.+...+.|
T Consensus 155 h~~~~~c~~y~~gfC 169 (325)
T KOG1040|consen 155 HERKVLCPPYNAGFC 169 (325)
T ss_pred hhcccCCCchhhhhc
Confidence 988744433334333
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.37 E-value=0.0015 Score=81.39 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCchHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~-~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
...+.+-|.+++..+.. ++.++|+|+.|+||||.+-..+ ++.....|+.+.|+..+|..+. +..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~------ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIE------ 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCc------
Confidence 35688999999999876 5789999999999998766543 3333346777778777665543 222211
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
-.|-..++..+..+...+...++|||||+- +++.+.+..+++... ....|+|++.=+
T Consensus 420 ----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVGD~ 476 (744)
T TIGR02768 420 ----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVGDP 476 (744)
T ss_pred ----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCh
Confidence 012222222222222224488999999997 667666666665443 345788887633
No 188
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.00087 Score=76.02 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=75.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh----cCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle----~~~~~Iiv--t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t 114 (957)
++.+++++||||+||||.+..+... .+..+|.+ +-+-|+.+....+.+++.+|..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----------------- 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----------------- 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----------------
Confidence 4679999999999999888776543 23334333 334466676666666666553321
Q ss_pred cEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc-CCCceEEEecccCChHHHHH
Q 002165 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYRD 186 (957)
Q Consensus 115 ~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-~~~lklIlmSATld~~~~~~ 186 (957)
.+.+++-+...+.. +.++++|+||++= |....+.+...+..+... .+.-.++++|||...+.+.+
T Consensus 199 --~~~~~~~l~~~l~~----l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 199 --AVKDGGDLQLALAE----LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred --ecCCcccHHHHHHH----hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 12223333333331 2377999999998 565555666666655433 24457899999986655443
No 189
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.003 Score=71.43 Aligned_cols=125 Identities=13% Similarity=0.208 Sum_probs=72.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH---hcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL---AENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll---e~~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
+++.++||||+||||.+..+.. ..+.+. ++-+-|-|+++....+..++..+.++ +..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Eec
Confidence 5789999999999987766543 333332 33344667666655554444433221 112
Q ss_pred EcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEecccCChHHHHHHH
Q 002165 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSATld~~~~~~~f 188 (957)
.++..+.+.+..-. ...++++||||-+= |+....-.+.-++.++ ...++-.++++|||.......+..
T Consensus 303 ~d~~~L~~aL~~lk-~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 303 RDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred CCHHHHHHHHHHHH-hccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 35666665553210 01268999999998 5554444344444444 344565677899997655544433
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.27 E-value=0.00094 Score=76.18 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=53.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++++|.|..|||||..+...+.+. ....++++.+.......+.+.++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999997766665544 223455555555555556655555320 01122233
Q ss_pred EcHHHHHHHHHccCCCcCcceEEEEccccccccc
Q 002165 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE 152 (957)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~ 152 (957)
..+..+...+.........+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 34444443332111123489999999999 5544
No 191
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.26 E-value=0.0032 Score=60.82 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 32 REKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 32 Q~~il~~l~~--~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..++...+.. ++.++|.||+|+|||+.+-.....
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555 678999999999999866555443
No 192
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0028 Score=77.35 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=69.7
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
+.-|-.+++--+++-.+.-+..-|.-.-||=||| ..+|.++.....+.|-++....=+|.--+......+. .+|-.|
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~-~LGlsv 152 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE-FLGLSV 152 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH-HcCCce
Confidence 3445666667778888888888899999999999 4455565544444444444444333333333322221 345566
Q ss_pred EEeeecc----cccCCCCcEEEEcHHHH-----HHHHHcc--CCCcCcceEEEEcccc
Q 002165 101 GYHIGHS----KHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVH 147 (957)
Q Consensus 101 gy~v~~~----~~~~~~t~Ivv~T~g~L-----l~~l~~~--~l~l~~~~~VIIDEaH 147 (957)
|..+... +...=.++|.|+|..-| ..-|... ........+-|+||++
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 6554332 22222579999997443 2222110 1111256777888877
No 193
>PRK06526 transposase; Provisional
Probab=97.14 E-value=0.0012 Score=71.52 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.4
Q ss_pred HHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 37 EKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 37 ~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+.+..++++++.||+|+|||+..-..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHH
Confidence 34567789999999999999655433
No 194
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.12 E-value=0.00032 Score=47.98 Aligned_cols=25 Identities=48% Similarity=0.933 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCCCCCCC
Q 002165 763 KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 763 ~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
+..+|++| ..|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 45689999 99999999999999973
No 195
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0059 Score=71.12 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh----c-CCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCc
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA----E-NMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle----~-~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~ 115 (957)
++++++.||||+||||.+..+... . +.+. ++-+-|-|.++......++..++.++ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------~------------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------E------------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------E------------
Confidence 568999999999999877665432 2 2222 33345667777666666666544322 0
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-c-CCCceEEEecccCChHHHHHHHhh
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-K-KNDLRVVLMSATADITKYRDYFRD 190 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~-~~~lklIlmSATld~~~~~~~f~~ 190 (957)
...++.-+...+.. +.++++||||.+- |.....-....++.++. . .+.-..+++|||.....+.+....
T Consensus 283 -~~~~~~~l~~~l~~----~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 283 -VVYDPKELAKALEQ----LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred -ccCCHHhHHHHHHH----hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 11234444444442 2378999999997 44333333334444444 2 344558889999877766655443
No 196
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.06 E-value=0.0076 Score=74.75 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc----CCc-eE
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK----SHR-KV 330 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~----~~r-kV 330 (957)
...+.+.+.+..+.. . +|.+|||+++.+..+.++..|.... +..+. .++.. .+..+++.|+ .+. .|
T Consensus 518 ~~~~~~~~~i~~l~~-~---~gg~LVlFtSy~~l~~v~~~l~~~~-~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~V 588 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K---HKGSLVLFASRRQMQKVADLLPRDL-RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSV 588 (697)
T ss_pred HHHHHHHHHHHHHHh-c---CCCEEEEeCcHHHHHHHHHHHHHhc-CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeE
Confidence 344445555555554 2 3468999999999999999886321 23333 35543 2444554443 344 89
Q ss_pred EEEccccccCccCCC--eeEEEeCCcceeeeecCCCCc--------------cccce--eecCHHhHHHhcCCCCCCC--
Q 002165 331 ILATNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRKI--------------DSAEL--VWVSQSQAEQRRGRTGRTC-- 390 (957)
Q Consensus 331 lVaTniae~GIdIp~--V~~VId~G~~k~~~yd~~~~~--------------~~l~~--~~iSkas~~QR~GRAGR~~-- 390 (957)
+++|.....|||+|| .+.||-.|++ |.++... +.+.. .|-.--.+.|-+||.=|..
T Consensus 589 L~g~~sf~EGVD~pGd~l~~vII~kLP----F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D 664 (697)
T PRK11747 589 LFGLQSFAEGLDLPGDYLTQVIITKIP----FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQD 664 (697)
T ss_pred EEEeccccccccCCCCceEEEEEEcCC----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCc
Confidence 999999999999996 7888877765 3222211 11100 0112234689999998873
Q ss_pred CCeEEEe
Q 002165 391 DGQVYRL 397 (957)
Q Consensus 391 ~G~~~~L 397 (957)
.|..+.|
T Consensus 665 ~G~i~il 671 (697)
T PRK11747 665 RGRVTIL 671 (697)
T ss_pred eEEEEEE
Confidence 4765544
No 197
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.00018 Score=73.11 Aligned_cols=55 Identities=33% Similarity=0.826 Sum_probs=43.2
Q ss_pred CccccccccccccccCCCCCCCCCcCCCC-----------------------------ccccccccccc---c------c
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQA-----------------------------KRPACKFFYSL---Q------G 775 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~-----------------------------~~~~C~~f~~~---g------~ 775 (957)
..+..+|-.|..|.|.+|+.|.|+|+... ...+|+||.-. | .
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~ 161 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWT 161 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceee
Confidence 34678899999999999999999999510 12369999432 1 4
Q ss_pred CCCC-CCCCCCCCC
Q 002165 776 CRNG-DSCIFSHDL 788 (957)
Q Consensus 776 C~~g-~~C~~~H~~ 788 (957)
|.+| ++|.|.|.+
T Consensus 162 CPng~~~C~y~H~L 175 (299)
T COG5252 162 CPNGNMRCSYIHKL 175 (299)
T ss_pred CCCCCceeeeeecc
Confidence 9997 689999988
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.02 E-value=0.0018 Score=61.90 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCC--cEEEeccH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAENME--PILCTQPR 77 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~~~--~Iivt~Pr 77 (957)
++.++|.||+|+||||.+-..+...... .++.+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 5789999999999999887777665544 35555443
No 199
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.02 E-value=0.067 Score=61.88 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccc--cCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE--SSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae--~GIdIp~V~~VId~ 352 (957)
.+.+|||+|+.-+--.+...|. ..++....+|--.+..+-.++-..|..|+ +|++-|.=+- +=..|.||+.||-
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk--~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF- 376 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLK--KENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF- 376 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHH--hcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE-
Confidence 5789999999999999999998 45677888887777777777777887777 9999996331 3346778999997
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCC----CCCCeEEEeechhhhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR----TCDGQVYRLVTKSFFGT 405 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR----~~~G~~~~L~s~~~~~~ 405 (957)
|.+|....-| ++...+.+.... ...+.|..||++-+...
T Consensus 377 -------Y~~P~~p~fY-------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 377 -------YGPPENPQFY-------SELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred -------ECCCCChhHH-------HHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 8888877766 444555544333 25688999999855433
No 200
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.01 E-value=0.00083 Score=76.87 Aligned_cols=54 Identities=30% Similarity=0.613 Sum_probs=46.8
Q ss_pred CccccccccccccccCCCCCCCCCcCC--------CCcccccccccccccCCCCCCCCCCCCCCCC
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSL--------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQP 791 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~--------~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~ 791 (957)
.+..++|--|.+|.|.+||+|.|.|.. ..++..||-- |+|.+ .=|-|.|...+.
T Consensus 233 hYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 233 HYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred cccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence 357788999999999999999999987 5678899976 99999 679999987654
No 201
>PRK04296 thymidine kinase; Provisional
Probab=96.99 E-value=0.0051 Score=63.74 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEecc
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~P 76 (957)
+..++++||+|+||||.+..++... ...++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4578999999999999888887654 2345555544
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.01 Score=66.74 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HhcCCCcEEEe-ccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAENMEPILCT-QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~~~~~Iivt-~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.+++++|++|+||||.+..+. .+.+...+++. -+.|.++....+..+..+|.++.. +. ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~~-------~g~------ 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--HK-------YGA------ 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--cc-------CCC------
Confidence 478999999999998665543 33443333333 345666666566666666643311 00 000
Q ss_pred EcH-HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEecccCChHHH--HHHHh
Q 002165 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKY--RDYFR 189 (957)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSATld~~~~--~~~f~ 189 (957)
.| .++.+.+... ...++++||||.+. |.....-++.-++.+. ...|+..+++++||...+.. ...|.
T Consensus 206 -dp~~v~~~ai~~~--~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 206 -DPAAVAYDAIEHA--KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 11 1222222211 11268899999999 6653333333344443 34688889999999743333 44454
No 203
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.93 E-value=0.0038 Score=76.57 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=94.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc---eEEEEccccccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r---kVlVaTniae~GIdIp~V~~VId~ 352 (957)
+.++|||..-....+-+-..|. ..++..+-+.|....++|+..++.|...+ ..|++|-....|||+-+.+.||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLn--yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF- 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLN--YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF- 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHh--hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE-
Confidence 5799999988887777777777 45677888999999999999999997655 67899999999999999999997
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
||...+.. =-+++.-|+-|.|+++.=+.|||+++...+
T Consensus 1353 -------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1353 -------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred -------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 98876543 247888999999999999999999986543
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.92 E-value=0.0066 Score=76.93 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCCchHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHHHH--HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~-~~~vII~a~TGSGKTt~lp~~--lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.+.+++-|.+++..+.. ++.++|+|..|+||||.+-.. +++.....|+.+.|+-.+|..+. +..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi~------ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE----GGSGIA------ 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh----hccCcc------
Confidence 46789999999999887 457899999999999875432 23333346777778777665443 211110
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
-.|-..|+.-+..+...+...++|||||+- ++++..+..+++... ....|+|++.=+
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 012233332222222234478999999998 677776666665543 356788887655
No 205
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.91 E-value=0.0037 Score=71.59 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=44.8
Q ss_pred chHHHHHHHHHH------HcCCeEEEEcCCCCcHHHHHHHHHHh--cCCCcEEEeccHHHHHHHH
Q 002165 28 VMSLREKIVEKV------LENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAV 84 (957)
Q Consensus 28 i~~~Q~~il~~l------~~~~~vII~a~TGSGKTt~lp~~lle--~~~~~Iivt~Prrlaa~~v 84 (957)
+.+-|+++++.+ .++.++.|.|+-|+|||+.+-.+... .....++++.|+.+||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 456788888877 67789999999999999877555432 2335799999999998776
No 206
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.87 E-value=0.0054 Score=76.56 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh----cCCCcEEEeccHHHHHHHHHHHHH-----hhcCCcc-CCeeEEeeecccc---
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVA-----KGRNCEL-GGEVGYHIGHSKH--- 109 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle----~~~~~Iivt~Prrlaa~~va~rva-----~e~~~~l-g~~Vgy~v~~~~~--- 109 (957)
.++.+..+||+|||..+...+++ .++.+.+++.|....-..+.+.+. ..+.... |..+-+.+-....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 48999999999999755555443 356678888887665444444332 1111112 2223222211110
Q ss_pred ------c-------------CCCCcEEEEcHHHHHHHHHc---------cC--CCcC----cceEEEEcccccccccccH
Q 002165 110 ------L-------------SERSKIVFKTAGVLLDEMRD---------RG--LNAL----KYKVIILDEVHERSVESDL 155 (957)
Q Consensus 110 ------~-------------~~~t~Ivv~T~g~Ll~~l~~---------~~--l~l~----~~~~VIIDEaHER~~~~d~ 155 (957)
. ...-.|+++|.++|-..... +. .++. .=-+|||||.| +. +++
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh-~~-~~~- 216 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH-RF-PRD- 216 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC-CC-Ccc-
Confidence 1 11468999999998653220 00 0111 22479999999 33 221
Q ss_pred HHHHHHHHHhcCCCceEEEecccCCh
Q 002165 156 VLVCVKQLLLKKNDLRVVLMSATADI 181 (957)
Q Consensus 156 ll~~lk~l~~~~~~lklIlmSATld~ 181 (957)
-.-.+.+...+|. -++..|||.+.
T Consensus 217 -~k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred -hHHHHHHHhcCcc-cEEEEeeecCC
Confidence 0112334444543 36669999854
No 207
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.86 E-value=0.013 Score=72.79 Aligned_cols=135 Identities=17% Similarity=0.099 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC-c-eEEEE
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-KVILA 333 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~-r-kVlVa 333 (957)
.....+...+..+.... +|++|||+|+.+..+.+.+.+...... ..+..+|..+.+ .+++.|+.. . -++|+
T Consensus 462 ~~~~~~~~~i~~~~~~~---~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 462 ELLAKLAAYLREILKAS---PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDERE---ELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHHHhhc---CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCcHH---HHHHHHHHhcCCeEEEe
Confidence 34444445555555554 358999999999999999998743322 234456655544 445555433 3 79999
Q ss_pred ccccccCccCCCe--eEEEeCCcceeeeec----------CCCCcc--ccceeecCHHhHHHhcCCCCCCC--CCeEEEe
Q 002165 334 TNIAESSVTIPKV--AYVIDSCRSLQVFWD----------VNRKID--SAELVWVSQSQAEQRRGRTGRTC--DGQVYRL 397 (957)
Q Consensus 334 Tniae~GIdIp~V--~~VId~G~~k~~~yd----------~~~~~~--~l~~~~iSkas~~QR~GRAGR~~--~G~~~~L 397 (957)
|..+..|||+|+= +.||-.|++-...-| ...+.. .+...+..--...|-+||+=|.. .|.++.|
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999954 566655654221111 111101 11122333456689999999973 4766655
No 208
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.006 Score=71.57 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=69.8
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHh---cC-CCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCC
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLA---EN-MEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle---~~-~~~Iiv--t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~ 113 (957)
..+++++++|+||+||||.+..+... .+ ..+|.+ +-+.|+.+....+..+..++..+ .
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v------~---------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV------H---------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee------E----------
Confidence 45789999999999999877655432 22 233433 33456655444443333222111 0
Q ss_pred CcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHh
Q 002165 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 114 t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~ 189 (957)
...+++.+...+.. +.++++||||.+- ++.....+...+..+......-.+++++++.....+.+.+.
T Consensus 412 ---~a~d~~~L~~aL~~----l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 412 ---EADSAESLLDLLER----LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ---ecCcHHHHHHHHHH----hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 01134445554442 2378999999997 44333333333333333334567889999976655555443
No 209
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.85 E-value=0.02 Score=62.51 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=74.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CC-CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE-eeecccccCCCCcEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE---NM-EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY-HIGHSKHLSERSKIV 117 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~---~~-~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy-~v~~~~~~~~~t~Iv 117 (957)
.-.+|--.||.||--++.-.|+++ +. +.|.++....+... ..+.+.. .|..--..... .....+...-+..|+
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D-a~RDl~D-IG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD-AERDLRD-IGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH-HHHHHHH-hCCCcccceechhhccCcCCCCCCCcc
Confidence 356666689999998888888875 33 36778877665433 2333332 22111000000 011112222345699
Q ss_pred EEcHHHHHHHHHcc---CCCc---------CcceEEEEcccccccccccH-------HHHHHHHHHhcCCCceEEEeccc
Q 002165 118 FKTAGVLLDEMRDR---GLNA---------LKYKVIILDEVHERSVESDL-------VLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 118 v~T~g~Ll~~l~~~---~l~l---------~~~~~VIIDEaHER~~~~d~-------ll~~lk~l~~~~~~lklIlmSAT 178 (957)
|+|.-.|...-..+ ...+ .-=.+||+||+|. .-+..- .-.....+..+-|+.|++-+|||
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SAT 219 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK-AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASAT 219 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh-cCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccc
Confidence 99998887764311 0000 0135899999994 322211 11223344455688899999999
Q ss_pred C
Q 002165 179 A 179 (957)
Q Consensus 179 l 179 (957)
-
T Consensus 220 g 220 (303)
T PF13872_consen 220 G 220 (303)
T ss_pred c
Confidence 4
No 210
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.84 E-value=0.0025 Score=67.42 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHHHHHHhc----------CCCcEEEeccHHHHHHHHHHHHHh
Q 002165 28 VMSLREKIVEKVLENRV-TLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~-vII~a~TGSGKTt~lp~~lle~----------~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
+.+.|.+++..+..... .+|.||.|+|||+.+...+... ...+|+++.|...++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999988887 9999999999997776665544 234799999999999999998877
No 211
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0084 Score=68.68 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc----CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~----~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
+.+++++||||+||||++.++.... +.. .++-+-+-|.++....++.+...+.++- .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-------------
Confidence 3568899999999999988876532 222 2445566678887777777776554320 0
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc----CCCceEEEecccCChHHHHHHH
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK----KNDLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~----~~~lklIlmSATld~~~~~~~f 188 (957)
+.....+...+.. .++++||||=+- |.....-.+.-++.+... .+.-.++++|||...+.+.+..
T Consensus 285 -~~~~~~l~~~l~~-----~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 285 -VKDIKKFKETLAR-----DGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred -hHHHHHHHHHHHh-----CCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 0012334444432 278999999876 443333333333443332 2345788999998665544443
No 212
>PRK08181 transposase; Validated
Probab=96.79 E-value=0.012 Score=64.31 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEE
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILC 73 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iiv 73 (957)
.+..++++++.||+|+|||...-.+ +.+.+...+++
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4557889999999999999544333 34444433333
No 213
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.73 E-value=0.0047 Score=66.92 Aligned_cols=123 Identities=19% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH--HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l--p~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+-..++-.+++-.+.-++.-|+...||=|||..+ |.++.......|-|+.....+|..=++.+...+. .+|..||+.
T Consensus 74 ~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGlsv~~~ 152 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE-FLGLSVGII 152 (266)
T ss_dssp TS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH-HTT--EEEE
T ss_pred cCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH-HhhhccccC
Confidence 3444444445554432333399999999999443 4444333333444444444444444444443332 567777776
Q ss_pred eeccccc----CCCCcEEEEcHHHHHH-HHHcc----C--CCcCcceEEEEcccccc
Q 002165 104 IGHSKHL----SERSKIVFKTAGVLLD-EMRDR----G--LNALKYKVIILDEVHER 149 (957)
Q Consensus 104 v~~~~~~----~~~t~Ivv~T~g~Ll~-~l~~~----~--l~l~~~~~VIIDEaHER 149 (957)
....... .=..+|+|+|..-|.. .+++. . .....+.++||||||..
T Consensus 153 ~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 153 TSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp ETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred ccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4432211 1136799999977654 33321 1 11237899999999943
No 214
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.014 Score=66.84 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=73.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcccc--ccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA--ESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTnia--e~GIdIp~V~~VId~ 352 (957)
...|||+.|+.-+--.+..++.+.. +....+|--.+...-.++-..|-.|| +|++-|.-+ =+--+|.||+-||.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf- 628 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE--ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF- 628 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh--cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE-
Confidence 3578999999998888888887433 33333332222222223334455556 999999754 25567889999998
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-----CCCeEEEeechhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-----CDGQVYRLVTKSFF 403 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-----~~G~~~~L~s~~~~ 403 (957)
|.+|+...-| ++..-+.+|+--. ..-.|-.||++-+-
T Consensus 629 -------YqpP~~P~FY-------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 629 -------YQPPNNPHFY-------SEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred -------ecCCCCcHHH-------HHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999987766 5667888776332 23468888997443
No 215
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.70 E-value=0.011 Score=75.48 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCchHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 25 SLPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~-~~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
...+++-|.+++..+. .++.++|+|+-|+||||.+-... ++.....|+.+.|+--+|..+. +..|.. +
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~-----a 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQ-----S 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCC-----e
Confidence 4678999999999885 46889999999999998775543 3333346777777766665443 332221 0
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.|-..++-.+..+...+..-++|||||+. ++++..+..+++.+. ....|+|++.=+
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 12222211111111223367899999998 778777777776654 345788887655
No 216
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.015 Score=71.31 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCc
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL----AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iiv--t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~ 115 (957)
++++.++||||+||||.+..... ..+.++|.+ +-+-|+.+....+.+++.++.++-
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~------------------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH------------------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc------------------
Confidence 46889999999999988776652 334334433 335677776666666665553321
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCChHHHHHHH
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld~~~~~~~f 188 (957)
++.++.-+.+.+.. +.++++|+||=+= |+....-+...++.+.. ..+.-.++++|||...+.+.+..
T Consensus 247 -~~~~~~~l~~al~~----~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 247 -AVKDAADLRFALAA----LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred -ccCCHHHHHHHHHH----hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 12256666555542 3378999999998 66554445555555543 34666889999998776665443
No 217
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.62 E-value=0.00056 Score=83.41 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=99.1
Q ss_pred CCCCchHHHHHHHHHHHcC----------------CeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccHHHHHHH
Q 002165 24 SSLPVMSLREKIVEKVLEN----------------RVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVA 83 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~----------------~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Prrlaa~~ 83 (957)
..||+...+...++.+..+ .++++-+|||+|||..+-..+. +....+++++.|-..+...
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 3466666666666655432 4567889999999955444332 3344689999998888877
Q ss_pred HHHHHHhhcCCccCCeeEEeeec---ccccCCCCcEEEEcHHHHHHHHHc--cCCCcCcceEEEEcccccccccccHHHH
Q 002165 84 VAKMVAKGRNCELGGEVGYHIGH---SKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLV 158 (957)
Q Consensus 84 va~rva~e~~~~lg~~Vgy~v~~---~~~~~~~t~Ivv~T~g~Ll~~l~~--~~l~l~~~~~VIIDEaHER~~~~d~ll~ 158 (957)
.++++....... |..++-..+. +-..-..++|+++||+......++ ..-.+.+++.+|+||.|.-+-+....+.
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle 1067 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLE 1067 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEE
Confidence 777776654433 4333322111 111234689999999887665442 1113458999999999943322111111
Q ss_pred HH-HHHH----hcCCCceEEEeccc-CChHHHHHHHhh
Q 002165 159 CV-KQLL----LKKNDLRVVLMSAT-ADITKYRDYFRD 190 (957)
Q Consensus 159 ~l-k~l~----~~~~~lklIlmSAT-ld~~~~~~~f~~ 190 (957)
++ ...- ...+.+|++++|-- .++..+++|++.
T Consensus 1068 ~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1068 VIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred EEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCC
Confidence 11 1110 11234666666544 588999999975
No 218
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.012 Score=66.55 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=76.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH---hcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll---e~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
.+++++++||||+||||.+..+.. ..+.+ .++-+-|-|.+|....+..++.++.++ .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------~------------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------I------------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------E-------------
Confidence 467899999999999987766543 33333 244445667766665555555443211 0
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCChHHHHHHHhh
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFRD 190 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld~~~~~~~f~~ 190 (957)
+..+|.-+.+.+..-. ...++++||||=+= |+...+-.+.-++.+.. ..++.-++++|||.......+.+..
T Consensus 266 ~~~dp~dL~~al~~l~-~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 266 VATSPAELEEAVQYMT-YVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred ecCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 1134665554443210 11368999999997 55443334444444433 3566667889999877666666543
No 219
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.02 Score=66.09 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=77.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh----cCCC--cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle----~~~~--~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t 114 (957)
.++++.++||||+||||.+..+... .+.. .++..-+.|+.+......+++.+|.++- +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~-------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--S-------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--c--------------
Confidence 3568999999999999988755432 2322 4556667778877777777776654321 0
Q ss_pred cEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHhh
Q 002165 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRD 190 (957)
Q Consensus 115 ~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~~ 190 (957)
+-++.-+...+.. +.++++|+||.+= |.-..+.+...++.+.... +.-.++++|||...+.+.+....
T Consensus 254 ---v~~~~dl~~al~~----l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 254 ---IKDIADLQLMLHE----LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred ---CCCHHHHHHHHHH----hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1112222222221 3378999999985 5544444555556554333 33467889999877766665543
No 220
>PF13173 AAA_14: AAA domain
Probab=96.53 E-value=0.011 Score=57.12 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+++.++|.||.|+||||.+-+++.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999888877553
No 221
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.53 E-value=0.0016 Score=73.15 Aligned_cols=50 Identities=38% Similarity=0.788 Sum_probs=42.7
Q ss_pred ccccccccccc---ccCCCCCCCCCcCCCC--------cccccccccccccCCCCCCCCCC
Q 002165 736 EAPLCVYFING---SCNRGTGCPFSHSLQA--------KRPACKFFYSLQGCRNGDSCIFS 785 (957)
Q Consensus 736 ~~~~C~~f~~G---~C~~G~~C~f~H~~~~--------~~~~C~~f~~~g~C~~g~~C~~~ 785 (957)
+..+|.-...| .|.+|++|+|.||... -.+.|.+|...|.|.+|-+|+|.
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl 135 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFL 135 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehh
Confidence 56789988876 6999999999999821 13569999999999999999995
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.43 E-value=0.024 Score=63.71 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=29.6
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHh
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~ 189 (957)
++++||||+.+ ....+++....+-.++..+ ..-+-+++|..++++.+...++
T Consensus 246 ~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 246 NCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred cCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 78999999998 3334444443333333322 1123356666667776665553
No 223
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.41 E-value=0.0075 Score=65.09 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=58.0
Q ss_pred hhhccccCCCCCCCCCCCCC-c--cccccccc-cccccCCCCCCCCCcCCCC-cccccccccc--cccCCCCCCCCCCCC
Q 002165 715 QYVEDVSGNQDKAVNGSETP-G--EAPLCVYF-INGSCNRGTGCPFSHSLQA-KRPACKFFYS--LQGCRNGDSCIFSHD 787 (957)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~-~--~~~~C~~f-~~G~C~~G~~C~f~H~~~~-~~~~C~~f~~--~g~C~~g~~C~~~H~ 787 (957)
....+.|.....+.+-++.. . ....|+|| ..|.|..|..|.|.|..+. ....|.+|.. .+.|.+|..|++.|.
T Consensus 109 ~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~ 188 (285)
T COG5084 109 FFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHT 188 (285)
T ss_pred hhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCccccccc
Confidence 34466776666666555443 2 36779999 5899999999999998533 3557999942 799999999999998
Q ss_pred CCCC
Q 002165 788 LGQP 791 (957)
Q Consensus 788 ~~~~ 791 (957)
....
T Consensus 189 ~~~~ 192 (285)
T COG5084 189 LKRV 192 (285)
T ss_pred cccc
Confidence 8544
No 224
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.40 E-value=0.0018 Score=40.36 Aligned_cols=11 Identities=73% Similarity=1.555 Sum_probs=5.5
Q ss_pred CCCCCCCCCCC
Q 002165 776 CRNGDSCIFSH 786 (957)
Q Consensus 776 C~~g~~C~~~H 786 (957)
|++|++|.|.|
T Consensus 8 C~~~~~C~f~H 18 (19)
T PF14608_consen 8 CTNGDNCPFSH 18 (19)
T ss_pred CCCCCcCccCC
Confidence 55554455554
No 225
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.38 E-value=0.002 Score=40.14 Aligned_cols=19 Identities=47% Similarity=1.097 Sum_probs=16.8
Q ss_pred ccccccccccCCCCCCCCCcC
Q 002165 739 LCVYFINGSCNRGTGCPFSHS 759 (957)
Q Consensus 739 ~C~~f~~G~C~~G~~C~f~H~ 759 (957)
+|+||.. |++|++|.|+|+
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4999866 999999999995
No 226
>PRK08727 hypothetical protein; Validated
Probab=96.31 E-value=0.015 Score=62.36 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
+-+++.|++|+|||+.+-
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999996543
No 227
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.013 Score=64.66 Aligned_cols=132 Identities=17% Similarity=0.272 Sum_probs=79.7
Q ss_pred cCCCCchHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHHHHHH-----hcCCCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 23 FSSLPVMSLREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLL-----AENMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~--~vII~a~TGSGKTt~lp~~ll-----e~~~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
+.--|....|.-+++++++.. -|.+.|.-|||||......-+ ...+++|+++-|. ..
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~----------------vp 287 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT----------------VP 287 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC----------------cC
Confidence 445788889999999998765 588899999999954433322 3345689998773 25
Q ss_pred cCCeeEEeeeccc-ccCC-------C----CcEEEEcHHHHHHHHHccCCCcC----------cceEEEEcccccccccc
Q 002165 96 LGGEVGYHIGHSK-HLSE-------R----SKIVFKTAGVLLDEMRDRGLNAL----------KYKVIILDEVHERSVES 153 (957)
Q Consensus 96 lg~~Vgy~v~~~~-~~~~-------~----t~Ivv~T~g~Ll~~l~~~~l~l~----------~~~~VIIDEaHER~~~~ 153 (957)
+|..+||..+.+. +..+ + ...-=|+.+.|-..+....+.+. .=.+||||||+. +..
T Consensus 288 vG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN--LTp 365 (436)
T COG1875 288 VGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN--LTP 365 (436)
T ss_pred cccccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc--cCH
Confidence 6777887654321 1111 1 11122345566555544433221 236899999993 332
Q ss_pred cHHHHHHHHHHh-cCCCceEEEec
Q 002165 154 DLVLVCVKQLLL-KKNDLRVVLMS 176 (957)
Q Consensus 154 d~ll~~lk~l~~-~~~~lklIlmS 176 (957)
.- +|.++. ..+..|||++.
T Consensus 366 he----ikTiltR~G~GsKIVl~g 385 (436)
T COG1875 366 HE----LKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HH----HHHHHHhccCCCEEEEcC
Confidence 22 333333 35677888865
No 228
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.21 E-value=0.0027 Score=64.45 Aligned_cols=114 Identities=27% Similarity=0.327 Sum_probs=56.1
Q ss_pred EEEcCCCCcHHHHHHHHHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecc-------cccCCCCc
Q 002165 46 LIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-------KHLSERSK 115 (957)
Q Consensus 46 II~a~TGSGKTt~lp~~lle~~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~-------~~~~~~t~ 115 (957)
||+|+=|-|||+.+-..+.... ..+|+||.|+..++..+.+.....+. ..||..... .....+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 6899999999998877654332 24799999999888887766544322 122221100 11123678
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
|.|..|..+...-. ..+++|||||= .+ -+.+++.++... ..++||.|+.
T Consensus 76 i~f~~Pd~l~~~~~-------~~DlliVDEAA--aI----p~p~L~~ll~~~---~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAEKP-------QADLLIVDEAA--AI----PLPLLKQLLRRF---PRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGG--GS-----HHHHHHHHCCS---SEEEEEEEBS
T ss_pred EEEECCHHHHhCcC-------CCCEEEEechh--cC----CHHHHHHHHhhC---CEEEEEeecc
Confidence 88999987753211 45899999997 33 344556665443 3567788853
No 229
>PF05729 NACHT: NACHT domain
Probab=96.20 E-value=0.02 Score=57.06 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=33.5
Q ss_pred eEEEEcccccccccccH-----HHHHHHHHHhc--CCCceEEEecccCChHHHHHHHh
Q 002165 139 KVIILDEVHERSVESDL-----VLVCVKQLLLK--KNDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 139 ~~VIIDEaHER~~~~d~-----ll~~lk~l~~~--~~~lklIlmSATld~~~~~~~f~ 189 (957)
-+||||=+||-....+. ....++.++.. .++.++++.|.+-....+...+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 35899988875543332 44556556555 67899999888866555666554
No 230
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.16 E-value=0.0056 Score=62.06 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc--ccccCccCCC--eeE
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILATN--IAESSVTIPK--VAY 348 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~--~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn--iae~GIdIp~--V~~ 348 (957)
+|.+|||+|+.+..+.+.+.+..... ++.+..- ...+...+++.|+.+. -|++++. ....|||+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 47999999999999999999875432 2333322 2345666778887776 9999998 9999999995 778
Q ss_pred EEeCCcceeeeecCCCC--cc----------ccceeecCHHhHHHhcCCCCCCCCCe
Q 002165 349 VIDSCRSLQVFWDVNRK--ID----------SAELVWVSQSQAEQRRGRTGRTCDGQ 393 (957)
Q Consensus 349 VId~G~~k~~~yd~~~~--~~----------~l~~~~iSkas~~QR~GRAGR~~~G~ 393 (957)
||-.|++-...-|+... .+ ..-..+-.--...|-+||+=|...-.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~ 141 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDY 141 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-E
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCc
Confidence 88778763221121100 00 00011222245688899999985533
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.023 Score=60.96 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
..++|.|++|+|||..+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 232
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.024 Score=69.01 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=24.8
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
+++++||||+| .+..+-...++|.+....++.++|+.+
T Consensus 119 r~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 78999999999 344445566677655444455555543
No 233
>PRK08116 hypothetical protein; Validated
Probab=96.04 E-value=0.071 Score=58.36 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.7
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~ 61 (957)
.+++.|++|+|||+++-.
T Consensus 116 gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 499999999999965433
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.02 E-value=0.076 Score=57.16 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=33.2
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHh
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~ 189 (957)
++++|||||++.. ..+++-..++-.++..| .+.+-+++|.-++.+.+.+.++
T Consensus 162 ~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 162 NVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred cCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 7899999999943 35566555555555443 2234455565667777777664
No 235
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.00 E-value=0.022 Score=62.25 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~ 69 (957)
+....++++..+..++.+++.||+|+|||+.+-.+....+..
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 445667788888899999999999999998665544333433
No 236
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=95.99 E-value=0.005 Score=65.37 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=47.9
Q ss_pred Ccccccccccc-ccccCCCCCCCCCcCCCC------------cccccccccccccCCCCCCCCCCCCC
Q 002165 734 PGEAPLCVYFI-NGSCNRGTGCPFSHSLQA------------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 734 ~~~~~~C~~f~-~G~C~~G~~C~f~H~~~~------------~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
.+++++|.-|. .|.|.+|..|.|.|..+. ...+|+-+...|.|..|.+|.++|+.
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dk 338 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDK 338 (351)
T ss_pred ccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcccc
Confidence 46889999999 599999999999998622 24579999999999999999999987
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.029 Score=59.98 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=26.9
Q ss_pred cceEEEEccccccccccc---HHHHHHHHHHhcCCCceEEEecccCChHHHH
Q 002165 137 KYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSATADITKYR 185 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d---~ll~~lk~l~~~~~~lklIlmSATld~~~~~ 185 (957)
++++|||||+|.-..+.+ .+..++..+.. ...++|++|++..+..+.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~ 140 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHALS 140 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHcc
Confidence 678999999994222222 23333443322 233567888886655443
No 238
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.94 E-value=0.072 Score=58.15 Aligned_cols=127 Identities=14% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh---cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle---~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
++.+.+.|++|+||||.+-..... .+.. .++-+-+.|+.+....+..+..++.++ +.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~-------------------~~ 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IA 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------Ee
Confidence 368999999999999866554332 2222 234444556555443333333222110 00
Q ss_pred EEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHh
Q 002165 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~ 189 (957)
..++.-+.+.+..-. ...++++||||-+= |+.. .+.+..+.+.+....++..++++|||...+...+...
T Consensus 136 ~~~~~~l~~~l~~l~-~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 VRDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred cCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 123444444332100 11268999999997 5543 3344444443333456667888999986655555444
No 239
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.93 E-value=0.024 Score=61.85 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|.||+|+||||.+-.++.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3789999999999998877765543
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.93 E-value=0.019 Score=58.84 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHH---HHHHhcCCCcEEEe
Q 002165 39 VLENRVTLIVGETGCGKSSQVP---QFLLAENMEPILCT 74 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp---~~lle~~~~~Iivt 74 (957)
+.+++++++.|++|+|||.... ..+.+.+...+++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4567899999999999995433 33444444333333
No 241
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.042 Score=64.25 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=26.7
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
++.++|||||| .+..+....++|.+-. +..++++.-||-+
T Consensus 121 ~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte 160 (484)
T PRK14956 121 KYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTE 160 (484)
T ss_pred CCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCC
Confidence 78999999999 4556666777777743 3344555445533
No 242
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.89 E-value=0.016 Score=67.93 Aligned_cols=63 Identities=27% Similarity=0.437 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHH---HHHHhcCCCcEEEeccHHHHHHHHHHHHHh
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVP---QFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp---~~lle~~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
+...|..++++++.+...+|+||+|+|||.... ..+.+....+|+|..|.-+|+.++|..+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 678899999999999999999999999993333 334455667999999999999999998755
No 243
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.87 E-value=0.033 Score=68.31 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhh
Q 002165 26 LPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKG 91 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e 91 (957)
-.+.+.|.+++..+..+ ..++|.||+|+|||+.+...+... ...+|+++.|+..|+..+..++...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 45789999999998776 789999999999997776655432 2248999999999999999998763
No 244
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.86 E-value=0.11 Score=64.81 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCC------CCcEEEEecCCCCHHHHHHHHhcccC---
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICKS--- 326 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lhs~l~~~er~~i~~~f~~--- 326 (957)
...+.+.+.+..+.... +|.+|||.|+....+.+.+.+.... ....+..=..+. .++..+++.|+.
T Consensus 505 ~~~~~l~~~i~~~~~~~---pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 505 SLVRNLGELLVEFSKII---PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHHHhhcC---CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHHh
Confidence 34444555565655544 4789999999999998887765321 111222111111 355667777743
Q ss_pred -Cc-eEEEEc--cccccCccCCC--eeEEEeCCcce
Q 002165 327 -HR-KVILAT--NIAESSVTIPK--VAYVIDSCRSL 356 (957)
Q Consensus 327 -~r-kVlVaT--niae~GIdIp~--V~~VId~G~~k 356 (957)
++ -|++|+ .....|||++| .+.||-.|++-
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 34 799999 88999999996 67888788764
No 245
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.013 Score=63.51 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHHHHccCCCcC--cceEEEEcccc
Q 002165 121 AGVLLDEMRDRGLNAL--KYKVIILDEVH 147 (957)
Q Consensus 121 ~g~Ll~~l~~~~l~l~--~~~~VIIDEaH 147 (957)
-.+|+++++...++.. .-+.|.|||++
T Consensus 144 ENillkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 144 ENILLKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred HHHHHHHHHHcccCHHHHhCCeEEEechh
Confidence 3678888886654443 67899999999
No 246
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.072 Score=62.61 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH----hcCCCc--EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL----AENMEP--ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~--Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t 114 (957)
.++++.++||||+||||.+..+.. ..+..+ ++-+-+-|+.+....+.+++.+|..+.. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------- 319 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------- 319 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c-------------
Confidence 356899999999999988776653 333333 3444566788877777777766632210 0
Q ss_pred cEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHh
Q 002165 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 115 ~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~ 189 (957)
-+..-+...+. .+.++++++||.+= |+-....+...+..+.... +.-.+++++||.....+.+...
T Consensus 320 ----~~~~Dl~~aL~----~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 320 ----KDAADLRLALS----ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred ----CCchhHHHHHH----hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 00111111221 23477899999986 5543332333333322221 3337889999987766655443
No 247
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.78 E-value=0.078 Score=65.23 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHHHH-----HcC---CeEEEEcCCCCcHHHHHHHHH
Q 002165 24 SSLPVMSLREKIVEKV-----LEN---RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l-----~~~---~~vII~a~TGSGKTt~lp~~l 63 (957)
..||-+.-|.+.|..+ ... ..+.|.|+||+|||+.+-..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 5577776665555433 211 235699999999997665443
No 248
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.78 E-value=0.07 Score=59.36 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=49.9
Q ss_pred HHHHH-HHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec
Q 002165 32 REKIV-EKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (957)
Q Consensus 32 Q~~il-~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~ 106 (957)
+.+.+ .++..+.+++|+|+|||||||.+-..+-.. ...+|+++.-.... .......+....+
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El------------~~~~~~~v~~~~~- 187 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL------------QCAAPNVVQLRTS- 187 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh------------cCCCCCEEEEEec-
Confidence 33444 445677899999999999998875554332 12456555432221 1111122222211
Q ss_pred ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc
Q 002165 107 SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (957)
Q Consensus 107 ~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (957)
.+. .|...+++...+. +.+.||+.|+-
T Consensus 188 -----~~~----~~~~~~l~~aLR~-----~pD~iivGEiR 214 (299)
T TIGR02782 188 -----DDA----ISMTRLLKATLRL-----RPDRIIVGEVR 214 (299)
T ss_pred -----CCC----CCHHHHHHHHhcC-----CCCEEEEeccC
Confidence 111 1666666654432 67899999995
No 249
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.77 E-value=0.087 Score=61.01 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++|.|++|+|||+.+-..+-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999987766654
No 250
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.76 E-value=0.018 Score=63.92 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhcC---CCcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAEN---MEPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~~---~~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
+++-|.+++.. .++.++|.|..|||||+.+..- ++..+ ..+|+++.+++.+|..+..|+...++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 35778888887 6788999999999999766543 34443 24799999999999999999887543
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.73 E-value=0.044 Score=58.09 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..+++.||+|+|||+.+-.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44689999999999998665443
No 252
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.71 E-value=0.048 Score=64.30 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc--eEEEEccccccCccCCCeeEEEeCC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSC 353 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r--kVlVaTniae~GIdIp~V~~VId~G 353 (957)
+.++|+|..-.+.+.-+-++|. ..++.-+-+.|+....+|..+.+.|.... -.+++|-..+-||++-..+.||-
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~--yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF-- 1119 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLV--YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF-- 1119 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHH--hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE--
Confidence 5789999988888888888887 45688899999999999999999997655 77899999999999999999997
Q ss_pred cceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
||...+... -.+|+-|+-|-|.++.-.+|||+++...+
T Consensus 1120 ------YdSDWNPT~-------D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1120 ------YDSDWNPTA-------DQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ------ecCCCCcch-------hhHHHHHHHhccCccceeeeeecccccHH
Confidence 887765443 35678888888888899999999876443
No 253
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.71 E-value=0.028 Score=65.19 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=58.5
Q ss_pred cCCCCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 23 FSSLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
..+|...+.+.+.+..+.+. .-++++|||||||||.+=.++-+.... .-|+|. -+-
T Consensus 237 l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti---------------------EDP 295 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI---------------------EDP 295 (500)
T ss_pred HHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe---------------------eCC
Confidence 45677888888888777644 468999999999998777766554432 113331 122
Q ss_pred eEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc
Q 002165 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (957)
Q Consensus 100 Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (957)
|-|.+..-.++.-+.+|- +|-...++.+.+. +.++|+|.|+-
T Consensus 296 VE~~~~gI~Q~qVN~k~g-ltfa~~LRa~LRq-----DPDvImVGEIR 337 (500)
T COG2804 296 VEYQLPGINQVQVNPKIG-LTFARALRAILRQ-----DPDVIMVGEIR 337 (500)
T ss_pred eeeecCCcceeecccccC-CCHHHHHHHHhcc-----CCCeEEEeccC
Confidence 333333222221122221 3555666665533 66899999995
No 254
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.70 E-value=0.11 Score=58.24 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEE-eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL---AENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iiv-t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
++++.++||+|+||||.+..... ..+.+..++ .-+.|.+|.......+...+. ++... .. ...+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~--~~dp--- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KE--GADP--- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CC--CCCH---
Confidence 45788999999999987655532 333333333 334566655555555555442 22111 00 0011
Q ss_pred EEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEecccCChHHHH
Q 002165 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (957)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-------~~~~lklIlmSATld~~~~~ 185 (957)
.....+.+... ...++++||||=+- |....+-++.-++.+.. ..++-.+++++||...+.+.
T Consensus 182 ---a~~v~~~l~~~--~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 182 ---ASVAFDAIQAA--KARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred ---HHHHHHHHHHH--HhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 01111212111 11379999999998 66555555555444432 34667889999997554443
No 255
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.69 E-value=0.038 Score=60.24 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.7
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
.++++.||+|+|||+..
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999755
No 256
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.64 E-value=0.008 Score=69.05 Aligned_cols=50 Identities=30% Similarity=0.607 Sum_probs=40.5
Q ss_pred ccccccccccccccCCCCCCCCCcCCC-C----------cccccccccccccCCCCCCCCCCCCC
Q 002165 735 GEAPLCVYFINGSCNRGTGCPFSHSLQ-A----------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~~C~f~H~~~-~----------~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
+|.+.|.- +.|..|-.|+|.|+.. . ...+|--| .+|.|..||.|-|.|..
T Consensus 199 fKir~C~R---~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 199 FKIRRCSR---PRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGV 259 (528)
T ss_pred eeecccCC---ccCCCcccCCccCCCcccccCCcccccccCccCccc-ccCCCCCCCccccccce
Confidence 46777753 6899999999999542 1 23489999 88999999999999966
No 257
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.58 E-value=0.07 Score=58.46 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=36.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCC--------cEEEe-ccHHHHHHHHHHHHHhhcCCcc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENME--------PILCT-QPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~~--------~Iivt-~Prrlaa~~va~rva~e~~~~l 96 (957)
.+++|+|+||-|||+.+-.|.-.+... .|+++ .|-..-...++..+...++.+.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 589999999999999998888655321 34443 4444445566666666666554
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.56 E-value=0.037 Score=59.40 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
..+++.||+|+|||+.+-.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 259
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.54 E-value=0.073 Score=59.65 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=25.7
Q ss_pred HHHHHHHH-HHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 30 SLREKIVE-KVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 30 ~~Q~~il~-~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.|.+.+. ++..+.+++|+|+|||||||.+-..+
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 44556665 46778899999999999998775444
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.036 Score=68.75 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=30.4
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHH
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKY 184 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~ 184 (957)
.++.++|||||| .+..+....++|.+-.-...+++|+. |-+..++
T Consensus 118 gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 378999999999 34566677777777654555666664 5444443
No 261
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.51 E-value=0.0049 Score=67.77 Aligned_cols=25 Identities=40% Similarity=0.990 Sum_probs=16.6
Q ss_pred cccccccccccccCCCCCCCCCcCC
Q 002165 736 EAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
...+|+||+.|.|++|.+|+|||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 4455777777777777777777764
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.50 E-value=0.073 Score=62.06 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=65.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.+++++|++|+||||.+..+. .+.+.+. ++.+-+.|.+|....+.++...+.++ .+ .. ..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~----~~----~~----- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG----DP----DN----- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee----cC----Cc-----
Confidence 478899999999997765543 3444433 34444556666665666666554332 00 00 00
Q ss_pred EcH-HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEecccCCh
Q 002165 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADI 181 (957)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSATld~ 181 (957)
..+ ..+.+.+.. ..++++||||.+- |.-..+-++.-++.+. ...++.-+++++||...
T Consensus 160 ~d~~~i~~~al~~----~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 160 KDAVEIAKEGLEK----FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred cCHHHHHHHHHHH----hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 012 223333332 1245899999996 4433344444344433 23577788999998743
No 263
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.037 Score=67.27 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=26.1
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.++.++|||||| .++.+-...++|.+-.-.+..++|+.
T Consensus 118 g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 379999999999 34556667777766544444555554
No 264
>PHA00729 NTP-binding motif containing protein
Probab=95.45 E-value=0.045 Score=57.81 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=19.1
Q ss_pred HHHHHHHcC--CeEEEEcCCCCcHHHHH
Q 002165 34 KIVEKVLEN--RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 34 ~il~~l~~~--~~vII~a~TGSGKTt~l 59 (957)
.+++.+..+ .+++|.|++|+|||+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 345555444 37999999999999744
No 265
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.069 Score=64.30 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=26.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+++++||||+| .++......+||.+-.-..+.++|+.|
T Consensus 123 gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 379999999999 345555667777665444556555543
No 266
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0044 Score=69.12 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=36.6
Q ss_pred ccccccccccccc-cCCCCCCCCCcCCCC---cccccccccccccCCCCCCCCCCCCC
Q 002165 735 GEAPLCVYFINGS-CNRGTGCPFSHSLQA---KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 735 ~~~~~C~~f~~G~-C~~G~~C~f~H~~~~---~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
+-...|+||+.|. |++ .|+|.|..-. ...+|-|+.+..+|.+-. |-|.|..
T Consensus 30 ~n~t~C~~w~~~~~C~k--~C~YRHSe~~~kr~e~~CYwe~~p~gC~k~~-CgfRH~~ 84 (667)
T KOG4791|consen 30 GNETVCTLWQEGRCCRK--VCRYRHSEIDKKRSEIPCYWENQPTGCQKLN-CGFRHNR 84 (667)
T ss_pred cCcchhhhhhhcCcccc--cccchhhHHhhhcCcccceeecCCCccCCCc-cccccCC
Confidence 4456699999775 554 7999998622 345799994444499765 9999944
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.067 Score=63.11 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=25.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+| .+..+-...++|.+-.-.+...+|+.+
T Consensus 115 ~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 489999999999 344444556666665544555555543
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.35 E-value=0.04 Score=60.79 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh---c-CCCc--EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCc
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA---E-NMEP--ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle---~-~~~~--Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~ 115 (957)
+++++++||||+||||.+..+... . +..+ ++-+-|-|..+......++..++..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 358899999999999877665432 2 3223 344455566665555555554443221
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEccc
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEV 146 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEa 146 (957)
...++.-+.+.+.. +.++++||||.+
T Consensus 256 -~~~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 256 -VARDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred -ccCCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 01134445444442 236899999975
No 269
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.32 E-value=0.0062 Score=66.99 Aligned_cols=30 Identities=40% Similarity=0.733 Sum_probs=24.8
Q ss_pred CCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 002165 753 GCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (957)
Q Consensus 753 ~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~ 790 (957)
.|.=.-+ |+|| .-|.|+||.+|+|+|...-
T Consensus 136 Th~sMkp-------C~ff-Leg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 136 THESMKP-------CKFF-LEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred cchhhcc-------chHh-hccccccCcccccccCccc
Confidence 4555667 9999 8899999999999998744
No 270
>PRK06921 hypothetical protein; Provisional
Probab=95.31 E-value=0.1 Score=57.03 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+++.|+||+|||+++-.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3578999999999999655443
No 271
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.064 Score=61.47 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=24.1
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+|. +..+....+++.+....+..++|+.+
T Consensus 118 ~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3789999999993 33333445566655444555666543
No 272
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.28 E-value=0.13 Score=70.54 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=81.8
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHH--HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~--lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
.+++.+-|.+++..+..+ ++.+|.|+.|+||||.+-.. +++.....|++..|+.-+|..+.+.. |..-. ++
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~-Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI----PRLAS-TF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchhh-hH
Confidence 578899999999998764 79999999999999766544 33443346777777766666555432 21100 00
Q ss_pred EEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 101 gy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
. ++-...... ....|...|+ .....+..-++|||||+- ++++..+..+++... ..+.|||++.=+
T Consensus 502 ~---~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~ 566 (1960)
T TIGR02760 502 I---TWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDS 566 (1960)
T ss_pred H---HHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcCh
Confidence 0 000000000 0112222232 122233478999999998 677777777776553 456788887655
No 273
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.07 Score=64.36 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=24.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.++.++|||||| .++.+....++|.+-...+...+|+.
T Consensus 117 gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 117 GRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 378999999999 34444555566655544445556653
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.27 E-value=0.088 Score=63.91 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=26.1
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++++|||||+|. +..+-.-.++|.+-.-.+...+|+.+
T Consensus 131 a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4899999999993 34444556666665545566666654
No 275
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.22 E-value=0.14 Score=52.72 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=26.1
Q ss_pred hHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 29 MSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 29 ~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+.+.+.+.. +..+.+++|+|+|||||||.+-..+
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445566655 5678899999999999999775443
No 276
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.1 Score=62.33 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=25.6
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
++.++|||||| .+..+..-.++|.+-...+..++|+.+
T Consensus 119 ~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 79999999999 344555566777665444555665533
No 277
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.17 E-value=0.075 Score=60.86 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCcccc
Q 002165 445 LDPPYPEVVGDALDLLDHKRALQK 468 (957)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (957)
++|.+...+.+.++.|..+|.|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 456677888888888888888875
No 278
>PHA02244 ATPase-like protein
Probab=95.15 E-value=0.1 Score=58.86 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCch-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 002165 24 SSLPVM-SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM 68 (957)
Q Consensus 24 ~~LPi~-~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~ 68 (957)
..-|.. .....+...+..+..+++.||||+|||+.+-.+....+.
T Consensus 100 g~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444 345566666778889999999999999876555544443
No 279
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.11 Score=62.33 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=24.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++|||||| + ++.+....++|.+-...+...+|+.+
T Consensus 118 g~~kViIIDEa~-~-ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVH-M-LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechh-h-ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 478999999999 3 34445556666665434455555544
No 280
>PRK09183 transposase/IS protein; Provisional
Probab=95.11 E-value=0.16 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+.++++.||+|+|||+....+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 567889999999999999766554
No 281
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.08 E-value=0.13 Score=54.27 Aligned_cols=102 Identities=19% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCCchHHHHHHHHHHHc---CCeEEEEcCCCCcHHHH-HHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQ-VPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~---~~~vII~a~TGSGKTt~-lp~~ll--e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.++=|++.|.++...+.+ +++.+.+.-.|.|||+. +|...+ .++.+-+.++.|..++ .+..+.+...+|.-++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll-~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALL-EQMRQMLRSRLGGLLN 98 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHH-HHHHHHHHHHHHHHhC
Confidence 457788999999999875 47899999999999954 444433 3444456677776654 4445545454443444
Q ss_pred CeeEEeeecccccC-----------------CCCcEEEEcHHHHHHH
Q 002165 98 GEVGYHIGHSKHLS-----------------ERSKIVFKTAGVLLDE 127 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~-----------------~~t~Ivv~T~g~Ll~~ 127 (957)
..| |.+.|++... ....|+++||+.++..
T Consensus 99 r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 99 RRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred Cee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 432 3445544321 2457999999988765
No 282
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.14 Score=62.34 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=26.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++++|||||+|. +..+....++|.+-......++|+.+
T Consensus 118 gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3789999999993 44445556667665555566666654
No 283
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.07 E-value=0.015 Score=65.79 Aligned_cols=55 Identities=29% Similarity=0.738 Sum_probs=47.0
Q ss_pred ccccccc-ccccCCCCCCCCCcCC------------------CCcccccccccccccCCC-CCCCCCCCCCCCCC
Q 002165 738 PLCVYFI-NGSCNRGTGCPFSHSL------------------QAKRPACKFFYSLQGCRN-GDSCIFSHDLGQPV 792 (957)
Q Consensus 738 ~~C~~f~-~G~C~~G~~C~f~H~~------------------~~~~~~C~~f~~~g~C~~-g~~C~~~H~~~~~~ 792 (957)
..|.+|. +|.|.+|..|+|.|.. ..+++.|.+|...|.|+| |++|+|.|......
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 6799999 5999999999999984 012557999999999999 99999999886655
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.06 E-value=0.066 Score=51.13 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 002165 45 TLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~ll 64 (957)
+++.||.|+|||+.+-....
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999986644433
No 285
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.06 E-value=0.2 Score=61.32 Aligned_cols=136 Identities=20% Similarity=0.226 Sum_probs=81.5
Q ss_pred CCCchHHHHHHHHHHH---c--CCeEEEEcCCCCcHHHHHHHH---HHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 25 SLPVMSLREKIVEKVL---E--NRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~---~--~~~vII~a~TGSGKTt~lp~~---lle~~-~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
.|..+.-|.++++.+. + .+.++|+|.=|=|||..+-.. +.... ...|+||.|+..+++++.++.-+.+. .
T Consensus 209 ~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~ 287 (758)
T COG1444 209 ELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-F 287 (758)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-H
Confidence 3566667777666543 2 348999999999999766533 22333 34899999999998888777654322 1
Q ss_pred cCC--eeEEeeecc-c-ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 96 LGG--EVGYHIGHS-K-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 96 lg~--~Vgy~v~~~-~-~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
+|- .|.+....+ . ...+...|-|..|.... + .-++||||||= .+- +.+++.++... +
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~---------~~DllvVDEAA--aIp----lplL~~l~~~~---~ 348 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ-E---------EADLLVVDEAA--AIP----LPLLHKLLRRF---P 348 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc-c---------cCCEEEEehhh--cCC----hHHHHHHHhhc---C
Confidence 111 111111010 1 11234457788876543 1 24789999997 333 34445554332 4
Q ss_pred EEEecccCC
Q 002165 172 VVLMSATAD 180 (957)
Q Consensus 172 lIlmSATld 180 (957)
.++||.|+.
T Consensus 349 rv~~sTTIh 357 (758)
T COG1444 349 RVLFSTTIH 357 (758)
T ss_pred ceEEEeeec
Confidence 689999973
No 286
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.02 E-value=0.4 Score=57.87 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=83.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcC---C-----ccCCeeEEe-----e
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRN---C-----ELGGEVGYH-----I 104 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~rva~e~~---~-----~lg~~Vgy~-----v 104 (957)
+.+-.++.+|=|.|||+.+-.+ ++.....+|++|.|+.-.+.++-+++...+. . ..+..+... +
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I 265 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENL 265 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEE
Confidence 4467888999999999665533 2221235799999998888887777555332 1 111111111 1
Q ss_pred eccc--ccC-CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCCh
Q 002165 105 GHSK--HLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (957)
Q Consensus 105 ~~~~--~~~-~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~ 181 (957)
.+.. ... ..+.|.|++.+ .+...-..+++||+|||+ .+..+.+..++-.+.. .+.++|++|.+-+.
T Consensus 266 ~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 266 EYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 1111 111 12456665433 122222368999999999 3555666665554433 46789999999888
Q ss_pred HHHHHHHhhc
Q 002165 182 TKYRDYFRDL 191 (957)
Q Consensus 182 ~~~~~~f~~~ 191 (957)
+.+..++.++
T Consensus 335 ~s~tS~L~nL 344 (752)
T PHA03333 335 DSWISRVGEV 344 (752)
T ss_pred chHHHHhhhh
Confidence 8877777654
No 287
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.089 Score=62.53 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=18.6
Q ss_pred HHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
+.+++ .++++||.|+||||..-.+.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44554 68999999999998654443
No 288
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.2 Score=54.36 Aligned_cols=115 Identities=17% Similarity=0.334 Sum_probs=60.6
Q ss_pred HHHHHHcCCeEEEEcCCCCcHHHHHH---HHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccC
Q 002165 35 IVEKVLENRVTLIVGETGCGKSSQVP---QFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS 111 (957)
Q Consensus 35 il~~l~~~~~vII~a~TGSGKTt~lp---~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~ 111 (957)
..+.+.++.++++.|++|+|||..+. ..+...+...++++.|. +...+....+. |.
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e------l~~~Lk~~~~~--~~------------- 156 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD------LLSKLKAAFDE--GR------------- 156 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH------HHHHHHHHHhc--Cc-------------
Confidence 33445577899999999999995443 33443444444554442 12222221110 00
Q ss_pred CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc---ccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHH
Q 002165 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE---SDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 112 ~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~---~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f 188 (957)
..+.|.+.+ .+++++||||+=-.... .+.+..++-.....+ .+ +++.=.+.+.+.+.|
T Consensus 157 --------~~~~l~~~l-------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~ 217 (254)
T COG1484 157 --------LEEKLLREL-------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELF 217 (254)
T ss_pred --------hHHHHHHHh-------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhc
Confidence 123333322 37899999999732222 244444443333322 23 555556666676666
Q ss_pred h
Q 002165 189 R 189 (957)
Q Consensus 189 ~ 189 (957)
+
T Consensus 218 ~ 218 (254)
T COG1484 218 G 218 (254)
T ss_pred c
Confidence 5
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.2 Score=54.88 Aligned_cols=124 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HhcCCCcEEE-eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~~~~~Iiv-t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++++++|++|+||||.+.... .+.+.+..++ +-+-|.+++...+.++..++..+ + . ... ..+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~--~~~--~~d----- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--K--QKE--GAD----- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--e--CCC--CCC-----
Confidence 578889999999997665543 3334333233 34556666665555666554221 0 0 000 001
Q ss_pred EcH-HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEecccCChHHHH
Q 002165 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (957)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-------~~~~lklIlmSATld~~~~~ 185 (957)
| ....+.+... ...+|++||||=+- |......++.-++.+.. ..++-.+++++||...+.+.
T Consensus 139 --p~~~~~~~l~~~--~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 139 --PAAVAFDAIQKA--KARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred --HHHHHHHHHHHH--HHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 2 2222222211 12379999999998 55443333333333322 22677899999997554444
No 290
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.96 E-value=0.12 Score=57.81 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=30.6
Q ss_pred hHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEec
Q 002165 29 MSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQ 75 (957)
Q Consensus 29 ~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~ 75 (957)
.+.|.+.+.. +..+.+++|+|+|||||||.+-..+-.- ...+|+++.
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 3455555554 5667799999999999998874443321 223566554
No 291
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.088 Score=59.86 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=26.7
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
..+.+|||||||. ++..-...++|.+-.-.+...+|++|
T Consensus 140 g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3789999999993 45555666777775544455555554
No 292
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.92 E-value=0.17 Score=57.29 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-CcEEEecc
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCTQP 76 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-~~Iivt~P 76 (957)
++..+.+++|+|+|||||||.+-.++-.-.. .+++.+..
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 3567889999999999999987555433222 35555544
No 293
>PRK12377 putative replication protein; Provisional
Probab=94.90 E-value=0.39 Score=51.90 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHH---HHHHHhcCCCcEEEec
Q 002165 42 NRVTLIVGETGCGKSSQV---PQFLLAENMEPILCTQ 75 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~l---p~~lle~~~~~Iivt~ 75 (957)
...+++.|++|+|||+.+ ...+.+.+...++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 368999999999999544 3334444444444433
No 294
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.89 E-value=0.12 Score=55.00 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
++.+++.||+|+|||+.+-.+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457999999999999765444
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.87 E-value=0.43 Score=53.29 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++.+++.|++|+|||+.+-.+ +.+.+....++..|. +...+....+ .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~------l~~~lk~~~~------------------~~----- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE------FIRELKNSIS------------------DG----- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH------HHHHHHHHHh------------------cC-----
Confidence 468999999999999655443 334455555555552 1111211100 00
Q ss_pred EcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHh
Q 002165 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~ 189 (957)
+...+++. +.+++++||||+.--....-....++-.++..| ..-+-.++|.-++.+.+.+.|.
T Consensus 207 -~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 -SVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred -cHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 11122222 237899999999832222211223333333322 1223455566667777777774
No 296
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.86 E-value=0.19 Score=56.71 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 002165 32 REKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 32 Q~~il~~l~~~~--~vII~a~TGSGKTt~lp~~lle 65 (957)
.+.+...+..++ .+++.||+|+|||+.+-.+..+
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344444455555 7999999999999876555443
No 297
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.83 E-value=0.091 Score=55.71 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=23.5
Q ss_pred cceEEEEccccccccc---ccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 137 KYKVIILDEVHERSVE---SDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~---~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.+++||||++|.-.-. .+.+..++..+... +-++|+.|..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~ 139 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDR 139 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCC
Confidence 7899999999942211 13444445554433 3466666655
No 298
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.80 E-value=0.14 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.++|.|++|+|||+.+-+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999998887776554
No 299
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.76 E-value=0.27 Score=57.81 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.5
Q ss_pred eEEEEcCCCCcHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVP 60 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp 60 (957)
.+++.||+|+|||+.+-
T Consensus 132 ~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred eEEEEcCCCCcHHHHHH
Confidence 58999999999996553
No 300
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.17 Score=60.79 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=25.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+|. +..+..-.++|.+........+|+.+
T Consensus 118 ~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4789999999993 33344455667665544556666644
No 301
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.71 E-value=0.14 Score=60.03 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
+.++|.||+|+|||+.+-.
T Consensus 142 npl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 3589999999999975543
No 302
>CHL00181 cbbX CbbX; Provisional
Probab=94.67 E-value=0.13 Score=56.81 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
-++++.||+|+|||+..-
T Consensus 60 ~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 303
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.65 E-value=0.04 Score=64.52 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHH
Q 002165 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVA 89 (957)
Q Consensus 28 i~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva 89 (957)
+.+.|.+++....++ ...+|.||+|+|||+.+...+... ..++|+|..|+.+|...+..|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 567899999988877 468999999999995544444322 22689999999999888888754
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.65 E-value=0.099 Score=65.68 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=26.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+|. +..+-...++|.+......+.+|+.+
T Consensus 119 ~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4899999999993 34455556666665545556666544
No 305
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.62 E-value=0.049 Score=57.14 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.1
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
.+++.||.|+||||..
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999843
No 306
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.54 E-value=0.28 Score=57.93 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
+.+++.||+|+|||+.+-.
T Consensus 149 ~~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999975533
No 307
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.52 E-value=0.2 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+.+++|+|+|||||||.+-..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999875544
No 308
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.51 E-value=0.11 Score=56.50 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHH------cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 30 SLREKIVEKVL------ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 30 ~~Q~~il~~l~------~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..|+..+..+. ...+.+..||.|+|||..+..+..+
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 45666666554 2358999999999999766555443
No 309
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.49 E-value=0.58 Score=51.60 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=74.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh--cCCCcEEE------eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILC------TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle--~~~~~Iiv------t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~ 112 (957)
+...|++.||-|||||+.+--.+.+ ....+.++ .+.-++|...++..++.++... +..+|- +..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs---fte---- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS---FTE---- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc---cch----
Confidence 4567999999999999777666665 22222221 2446778888888888876532 121220 000
Q ss_pred CCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccc--cccccHHHHHHHHHHhcCCCceEEEecccCChH
Q 002165 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHER--SVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (957)
Q Consensus 113 ~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER--~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~ 182 (957)
+-..|+..+..+......--.+|+||+|-- ..+.-.+..++......+.++-+|++|..+|.-
T Consensus 120 -------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 120 -------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred -------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 124455555554332223346788898821 122234555566666667778889988888743
No 310
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.43 E-value=0.12 Score=59.95 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
...+.++.++..++++++.|++|+|||+.+-..
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 345677888889999999999999999876544
No 311
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.043 Score=61.59 Aligned_cols=51 Identities=27% Similarity=0.734 Sum_probs=39.5
Q ss_pred cccccccccccCCCCCCCCCcCCCCc--ccccccccccccCCCCCCCCCCCCCCC
Q 002165 738 PLCVYFINGSCNRGTGCPFSHSLQAK--RPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (957)
Q Consensus 738 ~~C~~f~~G~C~~G~~C~f~H~~~~~--~~~C~~f~~~g~C~~g~~C~~~H~~~~ 790 (957)
+-|.||+.-.|++|+.|.|+|..... ...|++|...-.|+. .|+|.|..-.
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k--~C~YRHSe~~ 56 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRK--VCRYRHSEID 56 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCcccc--cccchhhHHh
Confidence 56999999999999999999986432 457999944434554 5999997643
No 312
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.41 E-value=0.45 Score=57.44 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.7
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~ 61 (957)
.++|.|++|+|||.++-.
T Consensus 316 pL~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHA 333 (617)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 489999999999965543
No 313
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.17 Score=61.30 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.0
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+| .+..+-.-.++|.+-.-.+...+|+.+
T Consensus 117 ~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 489999999999 345555666667665444455555544
No 314
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=94.30 E-value=0.093 Score=57.99 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HHH---HHHhcCCCcEEEecc
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ-VPQ---FLLAENMEPILCTQP 76 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~-lp~---~lle~~~~~Iivt~P 76 (957)
.|.++-|..-++++.++..++-.||-|+|||+. ++. .+.....++|+.+-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 788999999999999999999999999999943 332 233333468999999
No 315
>PRK09087 hypothetical protein; Validated
Probab=94.23 E-value=0.26 Score=52.57 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp 60 (957)
++.++|.|++|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4459999999999998664
No 316
>PTZ00293 thymidine kinase; Provisional
Probab=94.23 E-value=0.19 Score=52.58 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=26.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEecc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~P 76 (957)
.|+..++.||-+||||+.+.+.+... ...+++++-|
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp 40 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKY 40 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEe
Confidence 35678999999999999888866543 3345666666
No 317
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.22 E-value=0.2 Score=68.85 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHH---H---HHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVP---Q---FLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp---~---~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..+++-|.+++..+..+ +.++|+|..|+||||.+- . -+++.....|+.+.|+--+|..+.+ .|...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a- 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA- 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch-
Confidence 46899999999998754 688999999999998882 2 2233333457767777666655532 12110
Q ss_pred CeeEEeeecccccCCCCcEEEEcHHHHHHHH--HccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM--RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l--~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.|-..|+... ....-.....++|||||+= ++++..+..+++.+. ....|+|++
T Consensus 1092 ---------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1092 ---------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred ---------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 0112222100 0000113367899999997 666666655555443 345788887
Q ss_pred ccc
Q 002165 176 SAT 178 (957)
Q Consensus 176 SAT 178 (957)
.=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 654
No 318
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.19 E-value=0.3 Score=64.85 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHH---H---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 27 PVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL---L---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~--~~~vII~a~TGSGKTt~lp~~l---l---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
.+++-|.+++..++. ++.++|+|..|+||||.+-..+ . +.....|+.+.|+--||..+.+ .|.. .
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~-A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVD-A- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCch-H-
Confidence 678999999999884 4899999999999998853332 1 2222357667777666555431 1211 0
Q ss_pred eeEEeeecccccCCCCcEEEEcHHHHHHHH----HccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 99 ~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l----~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.|-..||... ..........++|||||+= +++...+..+++.+. ....|+|+
T Consensus 908 --------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvVL 963 (1623)
T PRK14712 908 --------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAVA 963 (1623)
T ss_pred --------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEEE
Confidence 1111111110 0111112357899999997 666655555555443 24578998
Q ss_pred eccc
Q 002165 175 MSAT 178 (957)
Q Consensus 175 mSAT 178 (957)
+.=+
T Consensus 964 VGD~ 967 (1623)
T PRK14712 964 SGDT 967 (1623)
T ss_pred Ecch
Confidence 8766
No 319
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.13 E-value=0.36 Score=56.21 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
..+++.|++|+|||+.+-
T Consensus 137 n~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 357899999999997653
No 320
>PLN03025 replication factor C subunit; Provisional
Probab=94.10 E-value=0.33 Score=54.56 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..+++.||+|+|||+.+-.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998654443
No 321
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.06 E-value=0.092 Score=64.48 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCCchHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhh
Q 002165 24 SSLPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKG 91 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~-~~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e 91 (957)
..+-+..-|.+++..++ ...-.+|.|-+|+||||.+...+ |-...++|++|.-+-.|+..+-.++...
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc
Confidence 34556777877777655 44568999999999997766553 3344568999988888888777766553
No 322
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.19 Score=61.08 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=24.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++||||+| .+..+-.-.++|.+-.......+|+.+
T Consensus 123 g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 379999999999 344455555666654434445555543
No 323
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.01 E-value=0.21 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 38 KVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 38 ~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
.+.+++ .+++.||+|+||||.+-.+.
T Consensus 29 ~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 29 ALKKNSISHAYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344554 36999999999998665443
No 324
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=93.90 E-value=0.018 Score=62.71 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.|.-+|++|||||||||.+.-|-++..
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~ 298 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLF 298 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHH
Confidence 456789999999999998888877643
No 325
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.87 E-value=0.48 Score=52.93 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~ 69 (957)
-..++..+..++.+++.|++|+|||+.+-+.....++.
T Consensus 54 ~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 54 TKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 34567777788999999999999999887776665554
No 326
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.86 E-value=0.16 Score=64.94 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=90.9
Q ss_pred cEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC--c-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~--r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++|||.+-.....-+...+.... +....++|+++..+|...++.|..+ . -.+++|-.++.|+|+-..+.||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~--- 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG--IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL--- 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE---
Confidence 79999999999988888887443 6788999999999999999999764 3 77788889999999999999998
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~ 403 (957)
||+..+.... .+|..|+-|.|+.++=.+|++.++...
T Consensus 788 -----~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 788 -----FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred -----eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 8987765544 566777777788888889999887554
No 327
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.22 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 37 EKVLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 37 ~~l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
.++.+++ .+++.||.|+||||..-.+
T Consensus 30 ~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 30 NSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 3444554 3889999999999765443
No 328
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.78 E-value=0.17 Score=51.05 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=30.1
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
..+.++|||||| .+..+..-+++|.+-.-..+..+|+++-.+
T Consensus 101 ~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 379999999999 456667777888776666667777766553
No 329
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.74 E-value=0.14 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred HHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 33 ~~il~~l~~--~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+++.+.+.+ ++.++|.||-|+|||+.+-.++-..
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4789999999999999877766654
No 330
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.38 Score=59.19 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=22.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.++.++|||||| .+..+..-.+++.+-..++...+|+
T Consensus 117 g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 117 SKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred CCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEE
Confidence 489999999999 3444455566666544333344444
No 331
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=0.36 Score=58.42 Aligned_cols=27 Identities=33% Similarity=0.494 Sum_probs=18.7
Q ss_pred HHHHHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 36 VEKVLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 36 l~~l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+++ .+++.||.|+|||+..-.+
T Consensus 29 ~~ai~~~ri~ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 29 SRAAQENRVAPAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 33445544 4789999999999755443
No 332
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.67 E-value=0.31 Score=62.81 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEec
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQ 75 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~ 75 (957)
...+.++|+||.|.||||.+.+++...+ ..+.++.
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 3557899999999999999999986554 4444443
No 333
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=93.64 E-value=0.22 Score=54.24 Aligned_cols=58 Identities=16% Similarity=0.374 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCc-------cccccccccccccCCCCCCCCCcCC
Q 002165 702 AEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPG-------EAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 702 k~~L~~iike~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
.++-+-.-.++.+.+..+.|+.++.+..+.+.+. +..-|..|++|+|.+ ++|+|.|..
T Consensus 29 ~kd~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHpp 93 (331)
T KOG2494|consen 29 VKDTKWLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSR-ENCKYLHPP 93 (331)
T ss_pred ccccchhHHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCc-ccceecCCC
Confidence 3344445668888888899988888444443332 344599999999999 679999997
No 334
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.64 E-value=0.46 Score=63.92 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=73.6
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHH--Hh----cCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~--~~~vII~a~TGSGKTt~lp~~l--le----~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..+++-|.+++..+.. ++.++|+|..|+||||.+-..+ ++ .....|+.+.|+--||..+. + .|..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~-- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVD-- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcc--
Confidence 4689999999999886 4799999999999998765433 21 12235666667655554332 1 2211
Q ss_pred CeeEEeeecccccCCCCcEEEEcHHHHHHHH----HccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 002165 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l----~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklI 173 (957)
-.|-..|+... ..........++|||||+= +++......+++.+. ....|+|
T Consensus 1039 --------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1039 --------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred --------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEEE
Confidence 01222222211 0111112356899999997 677666666666543 2357888
Q ss_pred Eeccc
Q 002165 174 LMSAT 178 (957)
Q Consensus 174 lmSAT 178 (957)
++.=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 87755
No 335
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.62 E-value=0.085 Score=57.77 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=26.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhcCC--CcEEEec
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~~~--~~Iivt~ 75 (957)
++.+.+++|+|+|||||||++-.++..... .+|+++.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred cccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 355789999999999999988666554322 3555544
No 336
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.60 E-value=0.24 Score=54.74 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.5
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
..+++.||+|+|||+..
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 37999999999999654
No 337
>PHA02533 17 large terminase protein; Provisional
Probab=93.59 E-value=1.3 Score=53.40 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=87.7
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCC-c-cC
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNC-E-LG 97 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Prrlaa~~va~rva~e~~~-~-lg 97 (957)
..+++.++|.+++..+..++-.++.-+=..|||+.+..+++ ......++++.|.+-.|..+.+++...... + +-
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 35889999999999987777778888899999987765433 122347888888888777776666532210 0 00
Q ss_pred CeeEEee--ecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 98 GEVGYHI--GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 98 ~~Vgy~v--~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
..+... +..-....+..|.+.|.+- +...-.+++++||||+|...-..++... +...+......++++.
T Consensus 136 -~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~iii 206 (534)
T PHA02533 136 -QPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKIIIT 206 (534)
T ss_pred -hcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEEEE
Confidence 001000 0001113456666655321 1111226778999999943211233333 3333333344567776
Q ss_pred cccCChHHHHHHHh
Q 002165 176 SATADITKYRDYFR 189 (957)
Q Consensus 176 SATld~~~~~~~f~ 189 (957)
|..-..+.+-+.+.
T Consensus 207 STp~G~n~fye~~~ 220 (534)
T PHA02533 207 STPNGLNHFYDIWT 220 (534)
T ss_pred ECCCchhhHHHHHH
Confidence 66643333444443
No 338
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.55 E-value=0.46 Score=53.22 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 33 EKIVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 33 ~~il~~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
..+...+.+++ .+++.||+|+|||+.+-.+.
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 34444455553 44558999999998664443
No 339
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.18 Score=61.43 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=19.0
Q ss_pred HHHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 37 EKVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 37 ~~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
..+..++ .+|+.||.|+|||+.+-.+.
T Consensus 30 ~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 30 NAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3445554 35899999999998665443
No 340
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.53 E-value=0.43 Score=49.11 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 34 ~il~~l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
.+...+.+++ .+++.||.|+|||+.+-.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~ 34 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALAL 34 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3455666663 5899999999999765444
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.51 E-value=0.82 Score=53.14 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=69.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.++.++|++|+||||.+.... ...+.+. ++-+-|.|.+|....+..+...+.++ +.... ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~------~~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYT------ES---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecC------CC----
Confidence 478899999999997765543 3344432 33345666666655555555444322 11000 00
Q ss_pred EcH-HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEecccC--ChHHHHHHHh
Q 002165 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFR 189 (957)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSATl--d~~~~~~~f~ 189 (957)
.| .+..+.+..- ...++++||||=+- |.-..+-++.-++.+. ...|+..+++++||. ++....+-|.
T Consensus 166 -dp~~i~~~~l~~~--~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 -DPVKIASEGVEKF--KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 11 1111122110 01278999999998 5544444444444443 335777889999996 3334445554
No 342
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.44 Score=55.28 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=66.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEcHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGV 123 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~ 123 (957)
.+++.||.|||||+...++.+.....-|=++.|....-.+-..+.+.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~--------------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH--------------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHH---------------------------------
Confidence 68999999999999999988888887777777754432221111111
Q ss_pred HHHHHHccCCCcCcceEEEEcccccccccc--------cHHHHHHHHHHhcCCC--ceEEEecccCChHH
Q 002165 124 LLDEMRDRGLNALKYKVIILDEVHERSVES--------DLVLVCVKQLLLKKND--LRVVLMSATADITK 183 (957)
Q Consensus 124 Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~--------d~ll~~lk~l~~~~~~--lklIlmSATld~~~ 183 (957)
+.+.+.+. .-+..++||+|++. |.++. ...+..|..++++.|. -|++++.-|-..+.
T Consensus 587 i~k~F~DA--YkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 587 IKKIFEDA--YKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred HHHHHHHh--hcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 11112111 12367899999997 77653 4566677777766554 47777777754443
No 343
>PRK10436 hypothetical protein; Provisional
Probab=93.41 E-value=0.26 Score=58.00 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..|-+.+.+.+.+..+. .+..++|+|||||||||.+-..+.+
T Consensus 198 ~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 198 ETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 34666676777666553 4557999999999999877554443
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.34 E-value=0.41 Score=48.47 Aligned_cols=121 Identities=16% Similarity=0.277 Sum_probs=59.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH---hcCCCcE-EEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEE
Q 002165 44 VTLIVGETGCGKSSQVPQFLL---AENMEPI-LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll---e~~~~~I-ivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~ 119 (957)
++++.|++|+||||....+.. +.+.+.+ +-..+++........+++...+..+ . ... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~------~-~~~----~~~----- 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPV------F-EEG----EGK----- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEE------E-ecC----CCC-----
Confidence 578999999999987655543 3333222 2234555444333333333222111 0 000 001
Q ss_pred cHHHHH-HHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCChHH
Q 002165 120 TAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITK 183 (957)
Q Consensus 120 T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld~~~ 183 (957)
.+..++ +.+... ...++++||||...-...+.+.+ ..++.+.. ..++.-+++++|....+.
T Consensus 66 ~~~~~~~~~~~~~--~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~~~~~ 128 (173)
T cd03115 66 DPVSIAKRAIEHA--REENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMTGQDA 128 (173)
T ss_pred CHHHHHHHHHHHH--HhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCCChHH
Confidence 122222 222211 11278899999999333333333 33344333 246777888888754433
No 345
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.29 E-value=0.64 Score=51.94 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.7
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999866443
No 346
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.3 Score=59.40 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=24.7
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+++++||||+| .+..+-...++|.+-.-.+...+|+.+
T Consensus 118 ~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 489999999999 344444555666665444445555433
No 347
>PRK10867 signal recognition particle protein; Provisional
Probab=93.21 E-value=0.39 Score=55.99 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=66.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH---hc-CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL---AE-NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll---e~-~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
.+++++|++|+||||.+..+.. .. +.+ .++-+-+.|.+|....+.+++..+.++ +.... .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~~~------~---- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPSGD------G---- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----EecCC------C----
Confidence 3688999999999987655533 33 433 345567788877765566666544332 11000 0
Q ss_pred EEcHHHHHHH-HHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccC
Q 002165 118 FKTAGVLLDE-MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (957)
Q Consensus 118 v~T~g~Ll~~-l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATl 179 (957)
..|.-+... +... ...++++||||=+= |....+-+..-+..+.. ..|+--+++++|+.
T Consensus 166 -~dp~~i~~~a~~~a--~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 -QDPVDIAKAALEEA--KENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred -CCHHHHHHHHHHHH--HhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 123333332 2211 11278999999997 55433344444333332 34555688888886
No 348
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.46 Score=56.53 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.++.++|||||| .+..+....+++.+-..++...+|+
T Consensus 118 ~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 118 GKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred CCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 489999999999 3334444455555543333433333
No 349
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.19 E-value=0.49 Score=60.20 Aligned_cols=117 Identities=24% Similarity=0.394 Sum_probs=57.3
Q ss_pred eEEEEcCCCCcHHHHH---HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEc
Q 002165 44 VTLIVGETGCGKSSQV---PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l---p~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T 120 (957)
++++.||||+|||... ...+.. +...++...- ..-+-...++...|...| .|||. .
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dm---se~~~~~~~~~l~g~~~g-yvg~~----------------~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYG-GEQNLITINM---SEFQEAHTVSRLKGSPPG-YVGYG----------------E 656 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeH---HHhhhhhhhccccCCCCC-ccccc----------------c
Confidence 5899999999999543 233322 2234444331 111112223333333322 23432 2
Q ss_pred HHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC---C-------CceEEEecccCChHHHHHHH
Q 002165 121 AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK---N-------DLRVVLMSATADITKYRDYF 188 (957)
Q Consensus 121 ~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~---~-------~lklIlmSATld~~~~~~~f 188 (957)
.|.|...+... .+++|+|||++. ...++...++..+-..+ . .-.+|+|++.+..+.+.+.+
T Consensus 657 ~g~L~~~v~~~-----p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRRK-----PYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHhC-----CCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 35565555543 578999999983 33333332222221111 0 12567777776655554443
No 350
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.14 E-value=0.095 Score=52.98 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=84.6
Q ss_pred eccCccccccccccccCC-CccccccCCCCCccccccccchhHHhhccccccchhc-ccCCC-----CCCCCcceeEEEe
Q 002165 826 LLDDTDMHFSANLACLYD-PSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVI-SEAGD-----NPIPWKEVKCVLW 898 (957)
Q Consensus 826 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~ 898 (957)
+.++-++.|+.+|+.... +..++||+--+......-=+.+..++..|..+--.+. |-... ..+...+..+|.|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467888999999999888 7777787754444333333455566666655443332 22221 1223568899999
Q ss_pred cCCccc-----cccchhHHHHHHHHHHHHHHHHHHHhhccCcEEEEEEcccee-eeeeeeeec
Q 002165 899 YPSLES-----YSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKF-AQLQVIFVA 955 (957)
Q Consensus 899 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 955 (957)
+++.-- ...+-.-.+.||..||+. |-++|+. +=+|.||+.+... ..-|+|.+|
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~---~G~IhVTl~~~~py~~W~i~~lA 140 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKP---DGEIHVTLKDGQPYDSWNIEELA 140 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCC---CCEEEEEeCCCCCCccccHHHHH
Confidence 988865 223444668899999995 5566665 7899999999875 788888765
No 351
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.26 Score=55.57 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=23.8
Q ss_pred cceEEEEcccccccc--cccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 137 KYKVIILDEVHERSV--ESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 137 ~~~~VIIDEaHER~~--~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
+=.+++|||+| |.- ..|+++-.+ .+-.|++..||-
T Consensus 104 r~tiLflDEIH-RfnK~QQD~lLp~v-------E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIH-RFNKAQQDALLPHV-------ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhh-hcChhhhhhhhhhh-------cCCeEEEEeccC
Confidence 44789999999 542 335555443 345789999994
No 352
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.49 Score=56.53 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=26.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++.++|||||| .+..+..-.++|.+-...+...+|+.+
T Consensus 116 ~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 489999999999 344556666677666555556666644
No 353
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.04 E-value=0.036 Score=55.34 Aligned_cols=27 Identities=26% Similarity=0.663 Sum_probs=23.2
Q ss_pred Ccccccccccc-ccccCCCCCCCCCcCC
Q 002165 734 PGEAPLCVYFI-NGSCNRGTGCPFSHSL 760 (957)
Q Consensus 734 ~~~~~~C~~f~-~G~C~~G~~C~f~H~~ 760 (957)
...+.+|+-|. +|.|-+||+|+|.|+.
T Consensus 138 D~qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 138 DTQPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred ecCcccccchhhcccccCCchhhhhhhh
Confidence 35678899998 7999999999999985
No 354
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=0.34 Score=58.38 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=22.8
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+++++|||||| + +..+..-.+++.+-..++...+|+++
T Consensus 118 ~~~KVIIIDEad-~-Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAH-M-LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechH-h-CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 378999999999 3 33334445555554333444444444
No 355
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.99 E-value=0.29 Score=59.89 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=25.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHH
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITK 183 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~ 183 (957)
.++.+|||||||. +..+..-.++|.+-.-.....+|+ +|-+...
T Consensus 120 ~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL--~t~~~~~ 163 (620)
T PRK14948 120 ARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL--ATTDPQR 163 (620)
T ss_pred CCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE--EeCChhh
Confidence 3789999999993 334445556666553333333333 3334443
No 356
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.94 E-value=0.18 Score=61.47 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCCCcEEEEcHHHHHHHHHccCCCcC-cceEEEEccccc
Q 002165 111 SERSKIVFKTAGVLLDEMRDRGLNAL-KYKVIILDEVHE 148 (957)
Q Consensus 111 ~~~t~Ivv~T~g~Ll~~l~~~~l~l~-~~~~VIIDEaHE 148 (957)
.++++|+||-...|++-..++...+. .=++||+||||.
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 45789999999999987655543332 668999999993
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.94 E-value=0.76 Score=56.46 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHc---CCeEEEEcCCCCcHHHHHHHHHH
Q 002165 30 SLREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 30 ~~Q~~il~~l~~---~~~vII~a~TGSGKTt~lp~~ll 64 (957)
-.+..++..+.+ .+.++|++|-|+||||.+.++..
T Consensus 22 v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 22 VVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred cccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 345566666654 47899999999999999999963
No 358
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.91 E-value=0.085 Score=56.14 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002165 45 TLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~lle~ 66 (957)
++|.|+.|||||+.+-..+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999887777664
No 359
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.87 E-value=0.26 Score=58.50 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHH
Q 002165 24 SSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~--~~~vII~a~TGSGKTt~lp~~ll 64 (957)
..|-+.+.+.+.+..+.. +..++|+|||||||||.+-..+.
T Consensus 222 ~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 222 ETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred HHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHh
Confidence 456677777777776543 34689999999999988755544
No 360
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.86 E-value=0.2 Score=56.57 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=25.6
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-CcEEEe
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCT 74 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-~~Iivt 74 (957)
++..+.+++|+|+|||||||.+-..+..-.. .+|+.+
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 3457889999999999999988554433222 355554
No 361
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.83 E-value=0.17 Score=55.73 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHc----CCeEEEEcCCCCcHHHHHHHHHHh----cCCCc-EEEeccHHHHHHHHHHHHHhhcCC
Q 002165 33 EKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLA----ENMEP-ILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 33 ~~il~~l~~----~~~vII~a~TGSGKTt~lp~~lle----~~~~~-Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
+++.+.+.. .+++.|.|..|+|||+.+-++..+ ..... +.+...+.....++.+.+...++.
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 456666665 458999999999999988877754 22222 333333332234455555555543
No 362
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.83 E-value=0.75 Score=52.13 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 30 SLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 30 ~~Q~~il~~l-~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+.+++..+ ..+.+++|+|+|||||||.+-..+
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~ 199 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSALL 199 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence 4555666654 466799999999999999875544
No 363
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.83 E-value=0.76 Score=54.21 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.5
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+.++|.|++|+|||+++
T Consensus 142 npl~i~G~~G~GKTHLl 158 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL 158 (450)
T ss_pred CceEEECCCCCcHHHHH
Confidence 35899999999999765
No 364
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.81 E-value=0.46 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
+++|+|+.|+||||.+-..+-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999998776543
No 365
>PRK04195 replication factor C large subunit; Provisional
Probab=92.74 E-value=0.73 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.+.++|.||+|+|||+.+-.+..+.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999987765555444
No 366
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.96 Score=51.76 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCCCchHHHHHHHHH-----HHcC--CeEEEEcCCCCcHHHHH
Q 002165 24 SSLPVMSLREKIVEK-----VLEN--RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~-----l~~~--~~vII~a~TGSGKTt~l 59 (957)
..||-..-|-+-+.. +..+ .+++|.|+||+|||+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 337766666554433 2222 47999999999999654
No 367
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.54 E-value=0.2 Score=54.04 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=38.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEcHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAG 122 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g 122 (957)
..+++.||.|-||||.. .-+|.|+|..+-..-|-. +--||
T Consensus 53 DHvLl~GPPGlGKTTLA--------------------------~IIA~Emgvn~k~tsGp~--------------leK~g 92 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA--------------------------HIIANELGVNLKITSGPA--------------LEKPG 92 (332)
T ss_pred CeEEeeCCCCCcHHHHH--------------------------HHHHHHhcCCeEeccccc--------------ccChh
Confidence 47999999999999843 334456665443322211 11245
Q ss_pred HHHHHHHccCCCcCcceEEEEcccc
Q 002165 123 VLLDEMRDRGLNALKYKVIILDEVH 147 (957)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (957)
=|...+.+ +..-+++.|||+|
T Consensus 93 DlaaiLt~----Le~~DVLFIDEIH 113 (332)
T COG2255 93 DLAAILTN----LEEGDVLFIDEIH 113 (332)
T ss_pred hHHHHHhc----CCcCCeEEEehhh
Confidence 55555542 4467899999999
No 368
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.48 E-value=0.43 Score=53.81 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHHHH
Q 002165 27 PVMSLREKIVEKVLENR----VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~----~vII~a~TGSGKTt~lp~ 61 (957)
+++|+|....+.+.... -.++.||.|.|||+..-.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 45788888888876433 478999999999965433
No 369
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.46 E-value=0.52 Score=57.15 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=18.7
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHH
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLL 164 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~ 164 (957)
.++.++||||+|. +..+..-.++|.+-
T Consensus 118 ~~~kViIIDE~~~--Lt~~a~naLLKtLE 144 (559)
T PRK05563 118 AKYKVYIIDEVHM--LSTGAFNALLKTLE 144 (559)
T ss_pred CCeEEEEEECccc--CCHHHHHHHHHHhc
Confidence 4899999999993 34444556666554
No 370
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.44 E-value=0.3 Score=59.33 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCCCchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+|-+.+.+.+.+..+. .+..++|+|||||||||.+-..+.
T Consensus 296 ~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 296 DKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 45667777776666553 345789999999999987754443
No 371
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.84 Score=54.54 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=23.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.++.+|||||+| + +..+.+..+++.+....+...+|+.
T Consensus 115 ~~~kVVIIDEad-~-ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 115 GGRKVYILDEAH-M-MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred CCCeEEEEECcc-c-cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 478999999999 3 3344555666665543344444443
No 372
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.37 E-value=0.34 Score=56.29 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
.++++.||||+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57999999999999754
No 373
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.37 E-value=0.26 Score=56.63 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.8
Q ss_pred HHHHcCCeEEEEcCCCCcHHHHH
Q 002165 37 EKVLENRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 37 ~~l~~~~~vII~a~TGSGKTt~l 59 (957)
+.+.++.|++..||+|+|||+.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH
Confidence 55678999999999999999644
No 374
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.31 E-value=0.43 Score=58.23 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=22.2
Q ss_pred ccCChhhHHhHHHHHHHHHHHHHhcCCcccccCC
Q 002165 608 HYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSN 641 (957)
Q Consensus 608 ~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~ 641 (957)
|-+++.-|+.-.++-..++..+.++.++.-.+.+
T Consensus 548 ~~~~~e~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (620)
T PRK14954 548 RKFSYEELMQDAALLSKEIESFYGIPLKLQIRYD 581 (620)
T ss_pred ccccHHHHHhHHHHHHHHHHHHhcCCceEEEEEe
Confidence 3345666666667777778778777776554443
No 375
>CHL00176 ftsH cell division protein; Validated
Probab=92.25 E-value=1.4 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
+.+++.||+|+|||+.+-....+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999866544433
No 376
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.24 E-value=0.15 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
...-|+|+|||||||||.+..++-.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~ 148 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDY 148 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHH
Confidence 3446899999999999888777643
No 377
>PRK06620 hypothetical protein; Validated
Probab=92.19 E-value=0.44 Score=50.37 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
+.+++.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998654
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.14 E-value=0.99 Score=52.64 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=65.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh----cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA----ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle----~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
+++++|++|+||||.+..+... .+.+ .++-+-++|.+|....+.++...+.++- .... .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~~~----~------- 164 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----ALGK----G------- 164 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ecCC----C-------
Confidence 6889999999999876655433 2333 3455566777766656666655443211 0000 0
Q ss_pred EcHHHHHH-HHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCC
Q 002165 119 KTAGVLLD-EMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (957)
Q Consensus 119 ~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld 180 (957)
..|.-+.. .+..- ...++++||||=+- |....+-++..++.+.. ..++--+++++||..
T Consensus 165 ~~P~~i~~~al~~~--~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 165 QSPVEIARRALEYA--KENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred CCHHHHHHHHHHHH--HhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 01222222 12110 11278999999998 55444444444444433 246666888888853
No 379
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.12 E-value=0.67 Score=53.20 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=20.2
Q ss_pred HHHHHHHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 34 ~il~~l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
.+...+.+++ .+++.||.|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444455553 6889999999999765444
No 380
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.03 E-value=0.17 Score=42.11 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+.+++|.|++||||||.+-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 458999999999999877544
No 381
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.02 E-value=0.42 Score=58.55 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=87.3
Q ss_pred HHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC---C-----------------CCCcEEEEecCCCCHHHHHHHHhcc
Q 002165 265 VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---L-----------------SSFFKVHILHSSVDTEQALMAMKIC 324 (957)
Q Consensus 265 v~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~---~-----------------~~~~~v~~lhs~l~~~er~~i~~~f 324 (957)
+..|.....+.+.++|||-.+...+..+-.+|.. . ..+.....+.|.....+|....+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 3445555555678999999887776666555531 1 1233466788999999999988888
Q ss_pred cC---C--ceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeec
Q 002165 325 KS---H--RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (957)
Q Consensus 325 ~~---~--rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s 399 (957)
.+ . |-.||+|-+..-|||+-+.+-||. ||...+.+-- .+.+=|+=|-|.+.|-.+|||+-
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVII--------fDasWNPSyD-------tQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVII--------FDASWNPSYD-------TQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEE--------EecccCCccc-------hHHHHHHHhhcCcCceeehhhhh
Confidence 53 3 378999999999999988877775 5555443321 23457889999999999999987
Q ss_pred hh
Q 002165 400 KS 401 (957)
Q Consensus 400 ~~ 401 (957)
..
T Consensus 1276 qG 1277 (1567)
T KOG1015|consen 1276 QG 1277 (1567)
T ss_pred cc
Confidence 54
No 382
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=92.00 E-value=0.42 Score=58.32 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=40.8
Q ss_pred ccCCceEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEE
Q 002165 324 CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYR 396 (957)
Q Consensus 324 f~~~rkVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~ 396 (957)
|...++.|++--++-.|-|=|+|=.+.- ..... |-.+=.|.+||.-|. ..|.-++
T Consensus 480 Fd~plRFIFS~waLrEGWDNPNVFtIck--------L~~S~----------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 480 FDEPLRFIFSKWALREGWDNPNVFTICK--------LRSSG----------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cCCcceeeeehhHHhhcCCCCCeeEEEE--------ecCCC----------cchHHHHHhccceeeeeccccceec
Confidence 5666799999999999999999877763 22232 233448999999997 5676554
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.96 E-value=0.31 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++.+.|.|++|+||||.+-..
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l 45 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAI 45 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 347789999999999999866544
No 384
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.24 Score=56.15 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=14.7
Q ss_pred cCCeEEEEcCCCCcHHH
Q 002165 41 ENRVTLIVGETGCGKSS 57 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt 57 (957)
+..||++.||||||||.
T Consensus 225 eKSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTL 241 (564)
T ss_pred ecccEEEECCCCCchhH
Confidence 44689999999999994
No 385
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.87 E-value=0.34 Score=60.39 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHH----c-----CCeEEEEcCCCCcHH--HHHHHHHHhc-CCCcEEEeccHHHHHHHH
Q 002165 26 LPVMSLREKIVEKVL----E-----NRVTLIVGETGCGKS--SQVPQFLLAE-NMEPILCTQPRRFAVVAV 84 (957)
Q Consensus 26 LPi~~~Q~~il~~l~----~-----~~~vII~a~TGSGKT--t~lp~~lle~-~~~~Iivt~Prrlaa~~v 84 (957)
+-.++-|.+.+..|. + ++.++|.|+||+||| +.+|..+... ..++|||...+..+-.|+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQL 94 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 446677877666554 3 378999999999999 6667655433 335677766666665555
No 386
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.87 E-value=0.32 Score=54.04 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhcCC-CcEEEeccH
Q 002165 29 MSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM-EPILCTQPR 77 (957)
Q Consensus 29 ~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~~~-~~Iivt~Pr 77 (957)
.+-+.+++..+.+. .+++|+|.|||||||.+=.++..-.. .+|++..-+
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDt 209 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDT 209 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeeh
Confidence 34566666665554 49999999999999987665544322 377777654
No 387
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.81 E-value=1 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHcCC---eEEEEcCCCCcHHHHHHH
Q 002165 35 IVEKVLENR---VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 35 il~~l~~~~---~vII~a~TGSGKTt~lp~ 61 (957)
+...+.+++ ..++.||.|+|||+..-.
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 334444554 578999999999975533
No 388
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.75 E-value=0.28 Score=61.34 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 27 PVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 27 Pi~~~Q~~il~~l----~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
|+++.|.+.++.+ .++++.++.+|||+|||..+.-..
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~a 50 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLI 50 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHH
Confidence 5688888877654 578899999999999995444333
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.69 E-value=0.68 Score=47.28 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.++|.|++|+|||+...+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999998888877653
No 390
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.64 E-value=0.97 Score=50.32 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHH-HHHHcCccccCCCCCCCccCHHHHH
Q 002165 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (957)
Q Consensus 451 ~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~ 483 (957)
..+...++ .|.+.|.|.. ...|+ ..|..|..
T Consensus 270 ~~~~~~~e~~Li~~~li~~-~~~g~-~~~~~~~~ 301 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQR-TPRGR-IATELAYE 301 (305)
T ss_pred chHHHhhhHHHHHcCCccc-CCchh-hhhHHHHH
Confidence 35667677 6999999976 45565 47888764
No 391
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.63 E-value=0.24 Score=65.60 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh---cC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---EN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle---~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.++-|.++|.. .+++++|.|.-|||||+.+...++. .+ ...|+++.=++.||..+..|+...+...+...-..
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 36778888873 6889999999999999776554432 22 23688888888899888888877654322211110
Q ss_pred eeecccccCCCCcEEEEcHHHHH-HHHHccCCCcC-cceEEEEcccccccccccHHHHHHHH
Q 002165 103 HIGHSKHLSERSKIVFKTAGVLL-DEMRDRGLNAL-KYKVIILDEVHERSVESDLVLVCVKQ 162 (957)
Q Consensus 103 ~v~~~~~~~~~t~Ivv~T~g~Ll-~~l~~~~l~l~-~~~~VIIDEaHER~~~~d~ll~~lk~ 162 (957)
. ...+....-...-|+|-..+. +.++.....+. +.+.=|.||.....+..+.+..++..
T Consensus 80 ~-~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 80 K-HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred H-HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 0 111222223345678865544 44443221111 44555699887544444554444443
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.45 E-value=0.28 Score=53.62 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 25 SLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
+|-..+.|.+.+..+. .+..++|+|+|||||||.+-.++..
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 4556666777776554 3457999999999999988655443
No 393
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.38 E-value=0.74 Score=45.29 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
+..++.+.|.|+.||||||.+-...-... .+.|.+-. . ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~-~--------------------~~i~~~~~----------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS-T--------------------VKIGYFEQ----------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-e--------------------EEEEEEcc-----------
Confidence 34778999999999999987644322111 11222210 0 13444311
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~ 164 (957)
.+.|...+......+ ..+.+++|+||-- ..+|.+....+.+.+.
T Consensus 71 --lS~G~~~rv~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 71 --LSGGEKMRLALAKLL-LENPNLLLLDEPT-NHLDLESIEALEEALK 114 (144)
T ss_pred --CCHHHHHHHHHHHHH-hcCCCEEEEeCCc-cCCCHHHHHHHHHHHH
Confidence 455655444332221 2377899999998 6677665555544443
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.25 E-value=0.86 Score=46.14 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCC--
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t-- 114 (957)
+..++.+.|.||.||||||.+-...-.. ..+.|.+-- ..+.... ...+. ..+||..... .....+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g-~~~~~~~-~~~~~--------~~i~~~~~~~-~~~~~t~~ 93 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG-VDLRDLD-LESLR--------KNIAYVPQDP-FLFSGTIR 93 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhhhcC-HHHHH--------hhEEEEcCCc-hhccchHH
Confidence 4578899999999999998765553221 123343321 1111000 00111 1244431111 110000
Q ss_pred -cEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 115 -KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 115 -~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+ .+.|.-.+......+ ..+.+++++||-= ..+|......+.+.+...... +.|+++
T Consensus 94 e~l--LS~G~~~rl~la~al-~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 94 ENI--LSGGQRQRIAIARAL-LRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred HHh--hCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 01 444544333222211 2377899999987 677766655555555443334 444444
No 395
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.21 E-value=1.6 Score=49.90 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=28.4
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
..+.+|||||+| .++......++|.+...++...+|++|...
T Consensus 140 ~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 478999999999 345566667777776544455556555443
No 396
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.65 Score=51.93 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=27.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
..+.+||||||+ .+..|..-.++|.+.....+..+|+.+
T Consensus 108 ~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 479999999999 445566677777766555666666555
No 397
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.20 E-value=0.23 Score=56.70 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=22.2
Q ss_pred HHHHHH-cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 35 IVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 35 il~~l~-~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+.+. .+..++|+|||||||||.+-.++
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 444554 66789999999999998775544
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.20 E-value=0.82 Score=53.42 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.8
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.||+|+||||.+-.+
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999866443
No 399
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.05 E-value=0.67 Score=53.57 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.++.++||||+| ++ +......++|.+- ..++-.++++.||
T Consensus 116 ~~~kViiIDead-~m-~~~aanaLLk~LE-ep~~~~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDAD-RL-TERAANALLKAVE-EPPPRTVWLLCAP 155 (394)
T ss_pred CCcEEEEEechh-hc-CHHHHHHHHHHhh-cCCCCCeEEEEEC
Confidence 478999999999 33 3344455666553 3444455555555
No 400
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.73 E-value=0.71 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.|.|+.||||||.+-...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999998765543
No 401
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.69 E-value=2.7 Score=47.37 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCCCchHHHHHHHHHHHcCC------eEEEEcCCCCcHHHHHHHHHHhcCCCcEEEecc----HHHHHHHHHHHHHhhcC
Q 002165 24 SSLPVMSLREKIVEKVLENR------VTLIVGETGCGKSSQVPQFLLAENMEPILCTQP----RRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~------~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~P----rrlaa~~va~rva~e~~ 93 (957)
+..|....|-..+..+..++ .++|-|.+|+|||+.+-+++-......+.+-+- .+..-.++...+ +
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~----~ 81 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKS----Q 81 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHh----c
Confidence 45788888999988887654 458999999999999988887765544433221 122222222222 1
Q ss_pred CccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccc-ccccccHHHHHHHHHHhcCCCceE
Q 002165 94 CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-RSVESDLVLVCVKQLLLKKNDLRV 172 (957)
Q Consensus 94 ~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE-R~~~~d~ll~~lk~l~~~~~~lkl 172 (957)
....-|..++ .....+++-=.++...... -....--+||+|-|+- |+.++-++-.+++.-...+.+.-.
T Consensus 82 --~~d~dg~~~~-------~~~en~~d~i~~l~q~~~~-t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~ 151 (438)
T KOG2543|consen 82 --LADKDGDKVE-------GDAENFSDFIYLLVQWPAA-TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIV 151 (438)
T ss_pred --cCCCchhhhh-------hHHHHHHHHHHHHHhhHHh-hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceE
Confidence 0011111110 0111111111111111110 0111345789999993 444444555555544444555667
Q ss_pred EEecccCChH
Q 002165 173 VLMSATADIT 182 (957)
Q Consensus 173 IlmSATld~~ 182 (957)
|++|+++-.+
T Consensus 152 iils~~~~e~ 161 (438)
T KOG2543|consen 152 IILSAPSCEK 161 (438)
T ss_pred EEEeccccHH
Confidence 8889997544
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.66 E-value=1.6 Score=44.68 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=25.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCC-CceEEEecc
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSA 177 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~-~lklIlmSA 177 (957)
.+.+++|+||.. ..++......+.+.+..... +..+|+.|-
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 367899999999 67776655555444433322 345555543
No 403
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.63 E-value=1.1 Score=50.38 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=29.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
..++++||||||. ++..-.-.++|.+-.-.++..+|+.|..
T Consensus 112 g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3789999999993 4555667778876655556666766644
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.56 E-value=6.5 Score=43.83 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=76.7
Q ss_pred eEEEEcCCCCcHHHHHHHH---HHhcCCCcEE-EeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEE
Q 002165 44 VTLIVGETGCGKSSQVPQF---LLAENMEPIL-CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~---lle~~~~~Ii-vt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~ 119 (957)
+++++|-.|+||||.+... +...+.+.++ -.-+-|.+|+...+-+++..|+.+- ... .-...+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI-------~~~-~G~DpA----- 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVI-------SGK-EGADPA----- 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEE-------ccC-CCCCcH-----
Confidence 6888999999999887654 4445544333 3346688888877777776665431 111 111111
Q ss_pred cHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhc-CCCc------eEEEecccC--ChHHHHHHHhh
Q 002165 120 TAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDL------RVVLMSATA--DITKYRDYFRD 190 (957)
Q Consensus 120 T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~-~~~l------klIlmSATl--d~~~~~~~f~~ 190 (957)
.+..+-+.... ..++++|++|=|- |+-+..=|+.-|+.+.+. .++. .++++=||. |+-.-++.|+.
T Consensus 208 --aVafDAi~~Ak--ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e 282 (340)
T COG0552 208 --AVAFDAIQAAK--ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE 282 (340)
T ss_pred --HHHHHHHHHHH--HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH
Confidence 23344444321 2389999999999 766655555555444332 3332 455668986 44444566665
Q ss_pred c
Q 002165 191 L 191 (957)
Q Consensus 191 ~ 191 (957)
.
T Consensus 283 a 283 (340)
T COG0552 283 A 283 (340)
T ss_pred h
Confidence 3
No 405
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.22 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.953 Sum_probs=18.1
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q 002165 765 PACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 765 ~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
.+|+|| +.|.|++|+.|+|+|..
T Consensus 9 tic~~~-~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYY-QKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhc-ccccccccceeeeeccC
Confidence 678877 77888888888888877
No 406
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.54 E-value=0.24 Score=58.88 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHHHHH-----cCCeEEEEcCCCCcHHHHHHHHHHhcCCC------------cEEEe
Q 002165 12 SSYSSPFTSPEFSSLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQFLLAENME------------PILCT 74 (957)
Q Consensus 12 ~~~~~~~~~~~r~~LPi~~~Q~~il~~l~-----~~~~vII~a~TGSGKTt~lp~~lle~~~~------------~Iivt 74 (957)
+.-+.-...+.-..+++.++|...+..+. ..+--|+...-|-|||..++..++..... .-+|+
T Consensus 310 P~et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII 389 (901)
T KOG4439|consen 310 PGETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLII 389 (901)
T ss_pred CCcccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEe
Q ss_pred ccHHHH---HHHHHHHHHhhcCCccCCeeEEeeecccccCC-----CCcEEEEcHHHHHH-------HHHccCCCcC-cc
Q 002165 75 QPRRFA---VVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE-----RSKIVFKTAGVLLD-------EMRDRGLNAL-KY 138 (957)
Q Consensus 75 ~Prrla---a~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~-----~t~Ivv~T~g~Ll~-------~l~~~~l~l~-~~ 138 (957)
.|-++. ...+++|+.+ ..-...-|. +...+... ..+|+++|.....+ .-.+....+. ..
T Consensus 390 ~PaSli~qW~~Ev~~rl~~----n~LsV~~~H-G~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W 464 (901)
T KOG4439|consen 390 CPASLIHQWEAEVARRLEQ----NALSVYLYH-GPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAW 464 (901)
T ss_pred CcHHHHHHHHHHHHHHHhh----cceEEEEec-CCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhH
Q ss_pred eEEEEcccc
Q 002165 139 KVIILDEVH 147 (957)
Q Consensus 139 ~~VIIDEaH 147 (957)
+-||+||||
T Consensus 465 ~RVILDEAH 473 (901)
T KOG4439|consen 465 SRVILDEAH 473 (901)
T ss_pred HHhhhhhhh
No 407
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.49 E-value=0.83 Score=56.84 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.8
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.||+|+||||.+-.+
T Consensus 54 slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 54 SLILYGPPGVGKTTLARII 72 (725)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999865443
No 408
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.48 E-value=0.81 Score=55.41 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHHHHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 35 il~~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
+...+.+++ ..++.||.|+|||+.+-.+.
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444455554 46899999999997654443
No 409
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.45 E-value=3.4 Score=50.08 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCcc-CCeeEE------eeeccccc
Q 002165 42 NRVTLIVGETGCGKSSQVP-QFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCEL-GGEVGY------HIGHSKHL 110 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp-~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~l-g~~Vgy------~v~~~~~~ 110 (957)
.+-.++..|==.|||..+- .+.+. ....+|+++.|++-.+..+.+++...+.... +..+.. .+.+.+
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n-- 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD-- 331 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC--
Confidence 3678889999999995433 32211 2234799999999998888877766332111 111111 111111
Q ss_pred CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhh
Q 002165 111 SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRD 190 (957)
Q Consensus 111 ~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~ 190 (957)
.....|.|.+.. ..+...-..++++|||||++ +..+.+..++--+.. .+.++|.+|.|-+.+.-..|+..
T Consensus 332 G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~--~n~k~I~ISS~Ns~~~sTSFL~n 401 (738)
T PHA03368 332 GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQ--TNCKIIFVSSTNTGKASTSFLYN 401 (738)
T ss_pred CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhc--cCccEEEEecCCCCccchHHHHh
Confidence 112366666430 11122334899999999994 555666666643332 38899999999777666666655
Q ss_pred c
Q 002165 191 L 191 (957)
Q Consensus 191 ~ 191 (957)
+
T Consensus 402 L 402 (738)
T PHA03368 402 L 402 (738)
T ss_pred h
Confidence 4
No 410
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.40 E-value=0.46 Score=53.66 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=22.3
Q ss_pred HHHHHHHH-HHHHcCccccCCCCCCCccCHHHHH
Q 002165 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (957)
Q Consensus 451 ~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~ 483 (957)
..+.+.++ .|.+.|.|.. .++|+ .+|+.|..
T Consensus 291 ~~~~~~~e~~Li~~~li~~-~~~gr-~~~~~~~~ 322 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQR-TPRGR-VATPKAYE 322 (328)
T ss_pred chHHHHhhHHHHHcCCccc-CCchH-HHHHHHHH
Confidence 45666777 8999999976 55665 47777764
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.39 E-value=2.1 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=23.5
Q ss_pred HHHHHHHHHc-C--CeEEEEcCCCCcHHHHHHHHHH
Q 002165 32 REKIVEKVLE-N--RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 32 Q~~il~~l~~-~--~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+..+..+.+ + +++++.|||||||||.+-...-
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 3444555543 3 5899999999999997766543
No 412
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.30 E-value=0.67 Score=57.58 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=37.6
Q ss_pred cCCCCchHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHHHhcC---CCcEEEeccHHHH
Q 002165 23 FSSLPVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFA 80 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l----~~~~~vII~a~TGSGKTt~lp~~lle~~---~~~Iivt~Prrla 80 (957)
......++.|.+++..+ .+++.++|.||||+|||..+..+.+... ..+|++..++..+
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~l 75 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKAL 75 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHH
Confidence 44566788888888665 3556799999999999955444433222 2355555555544
No 413
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.26 E-value=0.91 Score=54.02 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.7
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+.+++.||+|+|||+.+
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 57999999999999743
No 414
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.23 E-value=1.8 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=18.4
Q ss_pred HHHHHHHcCC---eEEEEcCCCCcHHHH
Q 002165 34 KIVEKVLENR---VTLIVGETGCGKSSQ 58 (957)
Q Consensus 34 ~il~~l~~~~---~vII~a~TGSGKTt~ 58 (957)
.+...+.+++ ..+++||.|+|||+.
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~ 55 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTC 55 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHH
Confidence 3445555654 478999999999983
No 415
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.14 E-value=0.52 Score=55.50 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.+..++|.|++|+||||.+.+++.+.. ..+++++.... ...++..+ +..++..... +.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~r-a~rlg~~~~~-----------------l~~ 139 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLR-AERLGLPSDN-----------------LYL 139 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHH-HHHcCCChhc-----------------EEE
Confidence 457899999999999999988877542 23555544322 23344444 3333332111 222
Q ss_pred Ec---HHHHHHHHHccCCCcCcceEEEEcccc
Q 002165 119 KT---AGVLLDEMRDRGLNALKYKVIILDEVH 147 (957)
Q Consensus 119 ~T---~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (957)
.. -+.+++.+.. .+.++||||+++
T Consensus 140 ~~e~~l~~i~~~i~~-----~~~~lVVIDSIq 166 (446)
T PRK11823 140 LAETNLEAILATIEE-----EKPDLVVIDSIQ 166 (446)
T ss_pred eCCCCHHHHHHHHHh-----hCCCEEEEechh
Confidence 21 2334444432 267899999998
No 416
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=90.08 E-value=1.2 Score=55.99 Aligned_cols=116 Identities=12% Similarity=0.166 Sum_probs=66.3
Q ss_pred chHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHHH-----hcCCC-cEEEeccHHHHHHHH-HHHHHhhcCCcc
Q 002165 28 VMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLL-----AENME-PILCTQPRRFAVVAV-AKMVAKGRNCEL 96 (957)
Q Consensus 28 i~~~Q~~il~~l----~~~~~vII~a~TGSGKTt~lp~~ll-----e~~~~-~Iivt~Prrlaa~~v-a~rva~e~~~~l 96 (957)
+..||..-++.+ ++|-|-|+.-+-|-|||.|...++. +.+|+ .+||+++..++-=.+ -+|++- |..+
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP--glKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP--GLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC--cceE
Confidence 467787777765 3667899999999999976655543 33455 566666544432111 222221 1111
Q ss_pred CCeeEEe-e----ecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc
Q 002165 97 GGEVGYH-I----GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (957)
Q Consensus 97 g~~Vgy~-v----~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH 147 (957)
-...|-. - |.........+|.|+++..+++-+.. +.-.++.++||||||
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhh
Confidence 1111111 0 11111234568889888888776542 112278999999999
No 417
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.08 E-value=0.83 Score=52.40 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=25.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcCC--CcEEEe
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCT 74 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~~--~~Iivt 74 (957)
.+..++|.|++|+||||.+.++..+... .+++++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv 116 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV 116 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4678999999999999988888765322 355554
No 418
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.03 E-value=1 Score=45.71 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHh
Q 002165 45 TLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
++|.|++|||||+..-+++.+.+ .+++++.+-+..-..+.+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHHHHHH
Confidence 68999999999998888887744 4555555444444556666544
No 419
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.98 E-value=3.3 Score=47.54 Aligned_cols=130 Identities=18% Similarity=0.300 Sum_probs=79.2
Q ss_pred eEEEEcCCCCcHHHHHH---HHHHhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEE
Q 002165 44 VTLIVGETGCGKSSQVP---QFLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp---~~lle~~~~-~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~ 119 (957)
+++++|=-||||||... .|+...+.+ -++.+-..|.||....+.+++..+.++-.. + .....+
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~---------~~~~Pv--- 168 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G---------TEKDPV--- 168 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C---------CCCCHH---
Confidence 67889999999997754 445554444 356667889999988888888766544221 0 011111
Q ss_pred cHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC--ChHHHHHHHhh
Q 002165 120 TAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA--DITKYRDYFRD 190 (957)
Q Consensus 120 T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl--d~~~~~~~f~~ 190 (957)
++.-+-+..- ....+++||||=|-...++.++...+...--..+|+=-++++=|++ ++...++-|+.
T Consensus 169 --~Iak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 169 --EIAKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred --HHHHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 1222222211 1126899999999833455554444433333447777778888886 66667777765
No 420
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=89.96 E-value=0.11 Score=52.04 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=23.7
Q ss_pred ccccccccccccCCCCCCCCCCCCCC
Q 002165 764 RPACKFFYSLQGCRNGDSCIFSHDLG 789 (957)
Q Consensus 764 ~~~C~~f~~~g~C~~g~~C~~~H~~~ 789 (957)
..+|+-|-.+|+|-|||.|+|.|..+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhh
Confidence 45799999999999999999999884
No 421
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.95 E-value=2.6 Score=47.23 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 122 GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 122 g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
.-+.+.+...++ ...+.+|||||||. ++..-.-.++|.+-. +|+..+|+++.
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~--m~~~aaNaLLK~LEE-Pp~~~fILi~~ 161 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAET--MNEAAANALLKTLEE-PGNGTLILIAP 161 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhh--cCHHHHHHHHHHHhC-CCCCeEEEEEC
Confidence 344455554443 24899999999993 344455566666644 44665555554
No 422
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.90 E-value=1 Score=48.15 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.+..++|.|++|+|||+..-+++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46789999999999999888887653
No 423
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.88 E-value=1.3 Score=45.19 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+..+.|.||.||||||.+-..+
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4567899999999999999886544
No 424
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=1 Score=54.37 Aligned_cols=125 Identities=25% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHH--------cCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhc-CCcc
Q 002165 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~--------~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~-~~~l 96 (957)
--+-.+.++|++.+. ++..+.++||+|.|||. ++.++|+.+..++ ...+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS----------------------LgkSIA~al~RkfvR~sL 383 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS----------------------LGKSIAKALGRKFVRISL 383 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh----------------------HHHHHHHHhCCCEEEEec
Confidence 445678888988764 45689999999999995 3455555544432 1123
Q ss_pred CCeeEEeeecccccCCCCcEEE-EcHHHHHHHHHccCCCcCcceEEEEccccc--ccccccHHHHHHHHHH---------
Q 002165 97 GGEVGYHIGHSKHLSERSKIVF-KTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQLL--------- 164 (957)
Q Consensus 97 g~~Vgy~v~~~~~~~~~t~Ivv-~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE--R~~~~d~ll~~lk~l~--------- 164 (957)
|+ +|.+......-+--+ +-||++++-|..... .=-++++||+|. .+...|..-++|.-+-
T Consensus 384 GG-----vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 384 GG-----VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSD 455 (782)
T ss_pred Cc-----cccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhh
Confidence 32 233333322222222 239999998875332 235799999996 3345565544443331
Q ss_pred ---hcCCCceEEEecccCC
Q 002165 165 ---LKKNDLRVVLMSATAD 180 (957)
Q Consensus 165 ---~~~~~lklIlmSATld 180 (957)
...-|+-=|++=||.|
T Consensus 456 hYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 456 HYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ccccCccchhheEEEeecC
Confidence 1223455566667754
No 425
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.74 E-value=1 Score=46.13 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=20.8
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+..+.|.||.||||||.+-..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l 45 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKIL 45 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHH
Confidence 4567889999999999999977543
No 426
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.70 E-value=1 Score=56.38 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.3
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.||||+|||+..-.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999755433
No 427
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=89.56 E-value=0.9 Score=45.69 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=62.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
+..+..+.|.|+.||||||.+-...-... .+.|.+-- ..+......+. ....+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g-~~~~~~~~~~~--------~~~~i~~~~q----------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG-KEVSFASPRDA--------RRAGIAMVYQ----------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EECCcCCHHHH--------HhcCeEEEEe-----------
Confidence 45788999999999999997755432211 12332211 00000000000 0112344321
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHh
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~ 189 (957)
.+.|...+......+ ..+.+++++||-= ..+|.+....+.+.+......-..|+++ |-+.+.+..+.+
T Consensus 83 --LS~G~~qrl~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~~~~~~d 150 (163)
T cd03216 83 --LSVGERQMVEIARAL-ARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI-SHRLDEVFEIAD 150 (163)
T ss_pred --cCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhCC
Confidence 556665544332221 2377899999997 6777665555544443332222334443 334444444443
No 428
>PRK11054 helD DNA helicase IV; Provisional
Probab=89.51 E-value=0.75 Score=57.02 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=50.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHH---HHHhcC---CCcEEEeccHHHHHHHHHHHHHhhc
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAEN---MEPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~---~lle~~---~~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
.-|+++.|.+++.. ....++|.|..|||||+.+.. +++..+ ...|+++...+-||..+.+|+...+
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 36899999998864 345678999999999965543 344433 2479999999999999999988754
No 429
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.47 E-value=0.74 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++|+||.|+||||.+-...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999998765543
No 430
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.37 E-value=2.4 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+.+++.||+|+|||+.+-...-+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999998665544443
No 431
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.36 E-value=2.6 Score=53.82 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.0
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
.+++.||||+|||+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 600 SFLFLGPTGVGKTELC 615 (857)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999754
No 432
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.35 E-value=0.21 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~ 61 (957)
+..+.+++|+||.||||||.+=-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999997643
No 433
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.27 E-value=0.12 Score=54.96 Aligned_cols=34 Identities=38% Similarity=0.814 Sum_probs=28.6
Q ss_pred CCcCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 002165 756 FSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (957)
Q Consensus 756 f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~ 790 (957)
..-+..++..+|-|| ..|.|..|+.|+|+|+...
T Consensus 84 v~~gvDPKSvvCafF-k~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 84 VPKGVDPKSVVCAFF-KQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred cccCCCchHHHHHHH-hccCCCCCCcccccchHHH
Confidence 444456788899999 8899999999999998854
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.27 E-value=0.29 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=17.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.++|+|||||||||.+-.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988765443
No 435
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=89.22 E-value=0.55 Score=50.54 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=52.8
Q ss_pred cEEEeccHHHHHHHHHHHHHhhcC--CccCCeeEEeeeccccc----CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEE
Q 002165 70 PILCTQPRRFAVVAVAKMVAKGRN--CELGGEVGYHIGHSKHL----SERSKIVFKTAGVLLDEMRDRGLNALKYKVIIL 143 (957)
Q Consensus 70 ~Iivt~Prrlaa~~va~rva~e~~--~~lg~~Vgy~v~~~~~~----~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VII 143 (957)
.++|+....+=|..+.+.+....+ +.++...+-++..++.+ ...++|.|+||+++..++..+.+.+.++.+|||
T Consensus 128 ~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivl 207 (252)
T PF14617_consen 128 HVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVL 207 (252)
T ss_pred EEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEE
Confidence 577777665556666666555432 23333233333332221 347899999999999999988888889999999
Q ss_pred cccc
Q 002165 144 DEVH 147 (957)
Q Consensus 144 DEaH 147 (957)
|--|
T Consensus 208 D~s~ 211 (252)
T PF14617_consen 208 DWSY 211 (252)
T ss_pred cCCc
Confidence 9877
No 436
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.18 E-value=0.72 Score=54.60 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=29.5
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
.+|.+.||||+| ++.+...-++||.+-.-++ .+++.=||-+
T Consensus 118 ~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~--hV~FIlATTe 158 (515)
T COG2812 118 GRYKVYIIDEVH--MLSKQAFNALLKTLEEPPS--HVKFILATTE 158 (515)
T ss_pred ccceEEEEecHH--hhhHHHHHHHhcccccCcc--CeEEEEecCC
Confidence 499999999999 6777777888888764444 4444446633
No 437
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.16 E-value=2.6 Score=42.00 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+.|+|++|+||||.+....
T Consensus 7 ki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEEEeCCCCccHHHHHHHHH
Confidence 58999999999999876653
No 438
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.15 E-value=1.4 Score=55.48 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.6
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
++++.||||+|||+..
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5799999999999644
No 439
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.12 E-value=1.7 Score=54.65 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+.+++.||+|||||+.+-.+..+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999986655444433
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.10 E-value=1.4 Score=55.50 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+++.||+|+|||+.+-.+
T Consensus 212 ~~giLL~GppGtGKT~larai 232 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred CceEEEECCCCCChHHHHHHH
Confidence 367999999999999865443
No 441
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.04 E-value=1.3 Score=52.25 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=20.0
Q ss_pred HHHHHHHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 34 ~il~~l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
.+...+..++ ..++.||.|+|||+.+-.+
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 3344455554 4789999999999765444
No 442
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.99 E-value=0.44 Score=48.66 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=25.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEecc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQP 76 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt~P 76 (957)
+..++.||-+||||+.+.+.+. +....++++.-|
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp 37 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKP 37 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4578999999999998888764 334456777666
No 443
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.97 E-value=0.68 Score=52.29 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILC 73 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~~~Iiv 73 (957)
..+.|.||.|||||.+.-...-+.+...|.+
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 3578899999999987665555555443333
No 444
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=88.96 E-value=0.9 Score=57.21 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHH--------cCCeEEEEcCCCCcHHHHHHH
Q 002165 28 VMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 28 i~~~Q~~il~~l~--------~~~~vII~a~TGSGKTt~lp~ 61 (957)
...++++|++.+. .+..+++.||+|+|||+..-.
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQS 368 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHH
Confidence 4566777776554 345799999999999975533
No 445
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=88.95 E-value=0.97 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.|.|+.||||||.+-...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999998765543
No 446
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.92 E-value=0.34 Score=60.79 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec--
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH-- 106 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~-~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~-- 106 (957)
--+++-.+.=++--|....||=||| ..+|.++-... .+.-+||.---+| ..=+..++..+ .-+|-+||.....
T Consensus 141 dVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA-~RDaewm~p~y-~flGLtVg~i~~~~~ 218 (1025)
T PRK12900 141 DVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLA-QRDKEWMNPVF-EFHGLSVGVILNTMR 218 (1025)
T ss_pred chHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhh-hhhHHHHHHHH-HHhCCeeeeeCCCCC
Confidence 3345655554555688999999999 44566655433 3344555544333 22222222211 1345566644221
Q ss_pred --ccccCCCCcEEEEcHHH-----HHHHHHcc--CCCcCcceEEEEccccc
Q 002165 107 --SKHLSERSKIVFKTAGV-----LLDEMRDR--GLNALKYKVIILDEVHE 148 (957)
Q Consensus 107 --~~~~~~~t~Ivv~T~g~-----Ll~~l~~~--~l~l~~~~~VIIDEaHE 148 (957)
+++..=.++|+|+|..- |.+-|... .+-...+.+.||||||-
T Consensus 219 ~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 219 PEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred HHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 11112258999999733 33333211 11123788999999993
No 447
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.85 E-value=2.8 Score=52.80 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~l 59 (957)
..++++.||+|+|||+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999754
No 448
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.84 E-value=0.77 Score=58.08 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=16.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+++.||+|+|||+.+-..
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999755443
No 449
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=88.80 E-value=0.95 Score=52.69 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHH----cC-CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec
Q 002165 32 REKIVEKVL----EN-RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (957)
Q Consensus 32 Q~~il~~l~----~~-~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~ 106 (957)
|-++|+.+. +| +.-++.|.||||||+.+...+.+-+.. -+|..|...+|-|++..+...+-. ..|-|-|..
T Consensus 17 QP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rP-tLV~AhNKTLAaQLy~Efk~fFP~---NaVEYFVSY 92 (663)
T COG0556 17 QPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRP-TLVLAHNKTLAAQLYSEFKEFFPE---NAVEYFVSY 92 (663)
T ss_pred cHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCC-eEEEecchhHHHHHHHHHHHhCcC---cceEEEeee
Confidence 444554443 32 577899999999999998888776654 455566667777787777776543 345566554
Q ss_pred cc
Q 002165 107 SK 108 (957)
Q Consensus 107 ~~ 108 (957)
-+
T Consensus 93 YD 94 (663)
T COG0556 93 YD 94 (663)
T ss_pred cc
Confidence 33
No 450
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.75 E-value=0.97 Score=56.17 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHH---HHHh-cCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLA-ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~---~lle-~~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
+.+.|.+++... +..++|.|..|||||+.+.. ++++ .+. .+|+++..++-||..+..|+...++..
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 577888888753 45677889999999955543 3443 343 478888888899999999998754421
Q ss_pred EeeecccccCCCCcEEEEcHHHHHH-HHHccCCCc-CcceEEEEcccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLD-EMRDRGLNA-LKYKVIILDEVH 147 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~-~l~~~~l~l-~~~~~VIIDEaH 147 (957)
....+.++|--.+.. .+......+ ..-+.-|+|+.+
T Consensus 75 ----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 113467888654443 333210000 022345778876
No 451
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=88.68 E-value=1.5 Score=45.09 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC-CeeEEeeecccccCCCCcEEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG-GEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg-~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++..+++||-.||||+-+.+.+... ...++++.-|. .+...+ ..|.-.++. ...-+.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~--------------iD~R~~~~~V~Sr~G~-----~~~A~~i 64 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA--------------IDTRYGVGKVSSRIGL-----SSEAVVI 64 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc--------------cccccccceeeeccCC-----cccceec
Confidence 4567899999999998887776543 23355555551 111111 112222111 1223444
Q ss_pred EcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChH
Q 002165 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (957)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~ 182 (957)
-.+.-+...+..... ...+++|.||||+ -++.+. ...+..+.. ++-+-++-+.++.+
T Consensus 65 ~~~~~i~~~i~~~~~-~~~~~~v~IDEaQ--F~~~~~-v~~l~~lad---~lgi~Vi~~GL~~D 121 (201)
T COG1435 65 PSDTDIFDEIAALHE-KPPVDCVLIDEAQ--FFDEEL-VYVLNELAD---RLGIPVICYGLDTD 121 (201)
T ss_pred CChHHHHHHHHhccc-CCCcCEEEEehhH--hCCHHH-HHHHHHHHh---hcCCEEEEeccccc
Confidence 455556666554321 1138899999999 333332 333333332 22344555665543
No 452
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.61 E-value=2.1 Score=48.18 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=24.7
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
..++++|||++| .++......++|.+........+|+
T Consensus 112 ~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 112 GGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred CCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEE
Confidence 489999999999 4566666667776654433444444
No 453
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=0.21 Score=52.32 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=23.9
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
.+.+++|+||-+ -.+|.|-+-.+-+.+-..+
T Consensus 161 lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr 191 (251)
T COG0396 161 LEPKLAILDEPD-SGLDIDALKIVAEGINALR 191 (251)
T ss_pred cCCCEEEecCCC-cCccHHHHHHHHHHHHHHh
Confidence 377899999999 7899988877766655444
No 454
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=88.41 E-value=1.3 Score=51.43 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
.++++.||||+|||+..-.
T Consensus 117 ~~iLL~GP~GsGKT~lAra 135 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQT 135 (413)
T ss_pred ceEEEECCCCcCHHHHHHH
Confidence 4799999999999975543
No 455
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.21 E-value=1.1 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.9
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++.+.|.|+.||||||.+-..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 357889999999999999976544
No 456
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.19 E-value=1.8 Score=48.94 Aligned_cols=60 Identities=18% Similarity=0.084 Sum_probs=35.4
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
|.|-.-.-|.+.+...+. ...++++|||+||. ++..-.-.+||.+-.-+++..+|+.|..
T Consensus 112 I~idqiR~l~~~~~~~~~-~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTH-RGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCHHHHHHHHHHhccCCc-cCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 333333334444443332 24899999999993 4555667778877654555555555544
No 457
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.16 E-value=0.86 Score=54.31 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHc-----C----CeEEEEcCCCCcHHHHHHHHHHh----cC--CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 30 SLREKIVEKVLE-----N----RVTLIVGETGCGKSSQVPQFLLA----EN--MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 30 ~~Q~~il~~l~~-----~----~~vII~a~TGSGKTt~lp~~lle----~~--~~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
|+|.-++..+.. + +.+++.-+=|-|||+.+....+- .+ ...|+++.+.+-.|..+.+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 457777776651 1 35777789999999665544321 11 236888888888777776665543221
Q ss_pred --ccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHc--cCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 95 --ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 95 --~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~--~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
.+....+..+ .......|.+-..+-+++.+.. +...-.+.+++|+||+|+. ..+-+...++.-+..+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCc
Confidence 1111111110 0001112222221222111111 1122237899999999953 2322445555555556555
Q ss_pred eE-EEecccC
Q 002165 171 RV-VLMSATA 179 (957)
Q Consensus 171 kl-IlmSATl 179 (957)
.+ ++.||..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 44 4455553
No 458
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.13 E-value=0.45 Score=54.44 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
..+..++|+|||||||||.+-..+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 355688999999999998775443
No 459
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.11 E-value=2.5 Score=53.95 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
.++++.||.|+|||+.+
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999755
No 460
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=88.07 E-value=0.28 Score=32.04 Aligned_cols=19 Identities=47% Similarity=1.155 Sum_probs=13.3
Q ss_pred cccccccc-ccCCCCCCCCCc
Q 002165 739 LCVYFING-SCNRGTGCPFSH 758 (957)
Q Consensus 739 ~C~~f~~G-~C~~G~~C~f~H 758 (957)
+|.|-++| .|+. +.|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 57777765 7754 5677777
No 461
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.05 E-value=2.5 Score=52.96 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~l 59 (957)
..++++.||+|+|||+.+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999754
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.00 E-value=0.56 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCC
Q 002165 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (957)
Q Consensus 33 ~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~ 69 (957)
+.+.+.+..+.++++.|+-|+||||.+--++...+..
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4556667778899999999999999776665554443
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.97 E-value=2.7 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..|+.+.|+||+||||||.+-..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999775554
No 464
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.82 E-value=2.5 Score=47.47 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=28.0
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
..++++|||+|| .++....-.++|.+-.-+++..+|+.|..
T Consensus 106 g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 489999999999 34455667778877655555555554443
No 465
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=87.82 E-value=1.4 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|+||.||||||.+-...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45789999999999998765544
No 466
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=87.63 E-value=0.31 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..|..+.|.||+||||||.+-..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999977554
No 467
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.58 E-value=2.4 Score=51.85 Aligned_cols=21 Identities=43% Similarity=0.860 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+++.||+|+||||.+-...
T Consensus 111 ~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 459999999999998775544
No 468
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.50 E-value=1.6 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.|.|+.||||||.+-...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3477899999999999999765543
No 469
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=1.7 Score=52.52 Aligned_cols=107 Identities=19% Similarity=0.327 Sum_probs=63.3
Q ss_pred CCchHHHHHHHHHHH--------cCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhc-CCcc
Q 002165 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~--------~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~-~~~l 96 (957)
--+..++++|++.|. +|+.+..+||+|-|||. .+.++|+.+..++ ...+
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTS----------------------I~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTS----------------------IAKSIARALNRKFFRFSV 471 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCccc----------------------HHHHHHHHhCCceEEEec
Confidence 456788999999875 56789999999999995 2344555443332 1122
Q ss_pred CCeeEEeeeccccc-CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccc--ccccccHHHHHHHH
Q 002165 97 GGEVGYHIGHSKHL-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQ 162 (957)
Q Consensus 97 g~~Vgy~v~~~~~~-~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE--R~~~~d~ll~~lk~ 162 (957)
|+.. ...+.. ..+|- +=+-||.+.+.|..-.. .--+|.|||+|. ++...|..-++|..
T Consensus 472 GG~t----DvAeIkGHRRTY-VGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLEl 532 (906)
T KOG2004|consen 472 GGMT----DVAEIKGHRRTY-VGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLEL 532 (906)
T ss_pred cccc----cHHhhcccceee-eccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHh
Confidence 2211 111111 11222 22349999998875322 335799999996 44556655555433
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.47 E-value=0.47 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+..++|+|||||||||.+-.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999988865543
No 471
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.45 E-value=3 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+.+++.||+|+|||+.+-.+..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999866444333
No 472
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.39 E-value=0.86 Score=48.55 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..+.|.|++|||||+...+++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999988888754
No 473
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.34 E-value=4.2 Score=46.87 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~l 59 (957)
..-++|.|++|+|||..+
T Consensus 113 ~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999754
No 474
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=87.31 E-value=0.88 Score=48.16 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.++.+.|.|++|+|||+...+++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4689999999999999888777654
No 475
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=87.23 E-value=0.18 Score=56.58 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHH
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSS 57 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt 57 (957)
.+.+|.++|+.|+.+.+|+..|+||||||-
T Consensus 25 ptdvqaeaiplilgggdvlmaaetgsgktg 54 (725)
T KOG0349|consen 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (725)
T ss_pred ccccccccccEEecCCcEEEEeccCCCCcc
Confidence 367999999999999999999999999993
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.18 E-value=0.48 Score=44.64 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=14.8
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~ 61 (957)
+++|.|++||||||..-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 479999999999985433
No 477
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=87.13 E-value=0.53 Score=59.21 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHHHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKT--t~lp~~lle~~-~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~ 106 (957)
++--+++-.+.=++--|.-..||=||| ..+|.++.... .+.-+||.---+| ..=+..+...+ .-+|-.||.....
T Consensus 170 ~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA-~RDaewmgply-~fLGLsvg~i~~~ 247 (1112)
T PRK12901 170 HYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLA-KRDSEWMGPLY-EFHGLSVDCIDKH 247 (1112)
T ss_pred ccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhh-hccHHHHHHHH-HHhCCceeecCCC
Confidence 334446666666666789999999999 44566665443 3445566554443 22222222211 1345555543221
Q ss_pred -----ccccCCCCcEEEEcHHH-----HHHHHHcc--CCCcCcceEEEEccccc
Q 002165 107 -----SKHLSERSKIVFKTAGV-----LLDEMRDR--GLNALKYKVIILDEVHE 148 (957)
Q Consensus 107 -----~~~~~~~t~Ivv~T~g~-----Ll~~l~~~--~l~l~~~~~VIIDEaHE 148 (957)
+++..=.++|+|+|..- |.+-|... ..-...+.+.||||||-
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 11112368999999743 22222211 11123688999999993
No 478
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.10 E-value=0.65 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.++.++|.||.|+||||.+-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999865543
No 479
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=0.22 Score=55.80 Aligned_cols=24 Identities=42% Similarity=0.973 Sum_probs=22.7
Q ss_pred cccccccccccCCCCCCCCCcCCC
Q 002165 738 PLCVYFINGSCNRGTGCPFSHSLQ 761 (957)
Q Consensus 738 ~~C~~f~~G~C~~G~~C~f~H~~~ 761 (957)
.+|+||+.|.|++|+.|+|+|+..
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 789999999999999999999974
No 480
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.04 E-value=1.2 Score=48.96 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=25.8
Q ss_pred HHHHHH-HcCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 34 KIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 34 ~il~~l-~~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.+++.+ ..++.++++||||||||..+-.++.+..
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCC
Confidence 445544 5677899999999999998877775433
No 481
>PRK13695 putative NTPase; Provisional
Probab=86.90 E-value=7.4 Score=39.39 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|+|+.|+||||.+-.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999877653
No 482
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.87 E-value=0.91 Score=50.84 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 35 il~~l~~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+..++..+++++++|+|||||||.+-..+..-
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~I 167 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDFI 167 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 44556788999999999999999887666543
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.86 E-value=0.69 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+-.|+.+.|+||+|+||||.+-..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHH
Confidence 457899999999999999865543
No 484
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.74 E-value=0.97 Score=53.42 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH---HhcCC-----CcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAENM-----EPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l---le~~~-----~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
+-|.+||. -..++.+||+|..||||||...+-+ +-... +.|+++-|.++...-++ +|--++|
T Consensus 215 kEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis-~VLPeLG 284 (747)
T COG3973 215 KEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS-RVLPELG 284 (747)
T ss_pred HhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH-Hhchhhc
Confidence 34555554 2467899999999999997765543 32221 25999999988654433 3334444
No 485
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=86.70 E-value=3.9 Score=43.78 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHcCC-eEEEEcCCCCcHHHHHHHHHHhcCC--C-cEEEeccHHHHHHHHHHHHHhh
Q 002165 36 VEKVLENR-VTLIVGETGCGKSSQVPQFLLAENM--E-PILCTQPRRFAVVAVAKMVAKG 91 (957)
Q Consensus 36 l~~l~~~~-~vII~a~TGSGKTt~lp~~lle~~~--~-~Iivt~Prrlaa~~va~rva~e 91 (957)
-..+..++ .+.++|+-|||||+..- .+++.-. . .+++..-..+....+..++...
T Consensus 44 ~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~ 102 (269)
T COG3267 44 HAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATLLEAIVAD 102 (269)
T ss_pred HHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHHHHHHHHH
Confidence 34466777 89999999999997655 4433221 2 3334444445555555555554
No 486
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.69 E-value=0.55 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=21.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
+.+..-||++|+|||||||.+...+-.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~y 150 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGY 150 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcc
Confidence 345568999999999999988776643
No 487
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=86.63 E-value=0.64 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+++++|++||||||.+-.+....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 479999999999998777665544
No 488
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=0.78 Score=51.28 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=56.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T 120 (957)
.-+.+++-||.|+|||. +|++++.+.|..++..-++.+ +.=.|+-
T Consensus 126 p~kGiLL~GPpG~GKTm--------------------------lAKA~Akeaga~fInv~~s~l---------t~KWfgE 170 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTM--------------------------LAKAIAKEAGANFINVSVSNL---------TSKWFGE 170 (386)
T ss_pred CCccceecCCCCchHHH--------------------------HHHHHHHHcCCCcceeecccc---------chhhHHH
Confidence 34689999999999994 355566666655544222221 1112344
Q ss_pred HHHHHHHHHccCCCcCcceEEEEccccc----ccccccHHHHHHHH-------HHhcCCCceEEEecccCC
Q 002165 121 AGVLLDEMRDRGLNALKYKVIILDEVHE----RSVESDLVLVCVKQ-------LLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 121 ~g~Ll~~l~~~~l~l~~~~~VIIDEaHE----R~~~~d~ll~~lk~-------l~~~~~~lklIlmSATld 180 (957)
.+.|.+.+..-.- -.....|.|||++- |.....-....+|. -+....+-+|++|.||=-
T Consensus 171 ~eKlv~AvFslAs-Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 171 AQKLVKAVFSLAS-KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred HHHHHHHHHhhhh-hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 5666665442111 12678999999983 21111111111211 122344568999999943
No 489
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.50 E-value=2.4 Score=54.25 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=15.5
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
.++|+.||+|+|||+.+-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999998653
No 490
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.48 E-value=3 Score=53.45 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHH-----cCCeEEEEcCCCCcHHHHHHHHHHhc---------CCCcEEEeccHHHHHHHHHHHHHhhc
Q 002165 27 PVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 27 Pi~~~Q~~il~~l~-----~~~~vII~a~TGSGKTt~lp~~lle~---------~~~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
|+.....++-..+. ...++++.||+|+|||+.+-.+.... ....++.+....+.+..-..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~------ 247 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR------ 247 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh------
Q ss_pred CCccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc---ccHHHHHHHHHHhcCCC
Q 002165 93 NCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE---SDLVLVCVKQLLLKKND 169 (957)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~---~d~ll~~lk~l~~~~~~ 169 (957)
+.-+.-++.+...-.....-.+|+|||+| +... .+-.......+...-..
T Consensus 248 --------------------------g~~e~~l~~~l~~~~~~~~~~ILfIDEih-~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 248 --------------------------GEFEERLKAVLNEVTKSEGQIILFIDELH-TLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred --------------------------hhHHHHHHHHHHHHHhcCCCeEEEeccHH-HhhcCCCCcchhHHHHHhchhhhc
Q ss_pred ceEEEecccCChHHHHHHHh
Q 002165 170 LRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 170 lklIlmSATld~~~~~~~f~ 189 (957)
..+.+.-|| +.+.+..||.
T Consensus 301 g~i~~IgaT-t~~e~r~~~~ 319 (852)
T TIGR03346 301 GELHCIGAT-TLDEYRKYIE 319 (852)
T ss_pred CceEEEEeC-cHHHHHHHhh
No 491
>PF12846 AAA_10: AAA-like domain
Probab=86.41 E-value=0.64 Score=51.13 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPR 77 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Pr 77 (957)
|.+++|.|+||||||+.+-.++.+.. ...+++.-|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 57899999999999987775554321 1345555553
No 492
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.39 E-value=3.4 Score=47.91 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+++.||+|+|||+.+-...
T Consensus 166 ~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred CceEEECCCCCChHHHHHHHH
Confidence 469999999999997654443
No 493
>PRK09354 recA recombinase A; Provisional
Probab=86.15 E-value=1.8 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.++.+.|.||+|||||+...+++.+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999888887653
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.01 E-value=1.1 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.|.|+.||||||.+-...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3478899999999999998765543
No 495
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=85.93 E-value=0.87 Score=48.31 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEe
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCT 74 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt 74 (957)
.+..++|.|++|+|||+...|++.+. +.+.++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 46799999999999999888888654 44445554
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.88 E-value=0.65 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
++.++|.||+||||||++-...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999665444
No 497
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.88 E-value=4.8 Score=45.06 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=23.4
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+++++||||+|. ++.+-.-.++|.+-.-++...+|+.+
T Consensus 92 ~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 4899999999993 23334455666655433344444433
No 498
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.75 E-value=2.7 Score=53.60 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.4
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
.+++.||||+|||+..
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999543
No 499
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.73 E-value=1.6 Score=54.35 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhc-CC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~-~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
+.+-|.+++.. ....++|.|..|||||+.+..- +++. +. +.|+++..++-+|..+.+|+...++..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 45778888765 3567899999999999665543 3432 32 467777777778888999987754411
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHHHHccCCC-c-CcceEEEEccccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLN-A-LKYKVIILDEVHE 148 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~-l-~~~~~VIIDEaHE 148 (957)
...++.|.|--.|...+...... . ..-..-|+||...
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 12467888876665443321100 0 0223457888773
No 500
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.60 E-value=4 Score=46.17 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=25.2
Q ss_pred CcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 136 ~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.+++++||||+|. ++.+..-.++|.+-.-.++..+|+.+
T Consensus 109 ~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 109 SNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 4789999999993 34445556666665544455555533
Done!