Query 002165
Match_columns 957
No_of_seqs 778 out of 3983
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 8E-84 2.7E-88 795.3 52.7 599 23-715 90-750 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-50 4.7E-55 500.5 38.7 463 27-532 30-553 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 9.2E-49 3.2E-53 482.9 38.4 444 27-528 25-529 (702)
4 2zj8_A DNA helicase, putative 100.0 9.2E-46 3.1E-50 457.4 35.7 446 27-532 23-538 (720)
5 3l9o_A ATP-dependent RNA helic 100.0 1.1E-35 3.7E-40 378.5 30.1 351 23-401 180-597 (1108)
6 3eiq_A Eukaryotic initiation f 100.0 7.4E-36 2.5E-40 343.9 24.9 316 26-404 61-390 (414)
7 3o8b_A HCV NS3 protease/helica 100.0 6.2E-37 2.1E-41 366.0 15.6 300 23-403 213-516 (666)
8 4f92_B U5 small nuclear ribonu 100.0 1.5E-34 5E-39 380.1 37.9 463 18-528 66-632 (1724)
9 2db3_A ATP-dependent RNA helic 100.0 1.4E-34 4.8E-39 336.5 31.7 309 28-401 79-407 (434)
10 3pey_A ATP-dependent RNA helic 100.0 2.9E-34 9.8E-39 327.8 32.2 320 26-401 26-356 (395)
11 3fht_A ATP-dependent RNA helic 100.0 5E-34 1.7E-38 328.2 33.6 321 26-402 46-380 (412)
12 1s2m_A Putative ATP-dependent 100.0 3.1E-34 1.1E-38 329.1 31.2 312 28-404 44-368 (400)
13 2i4i_A ATP-dependent RNA helic 100.0 5.4E-34 1.8E-38 328.9 31.3 313 27-404 37-386 (417)
14 4f92_B U5 small nuclear ribonu 100.0 2E-34 6.8E-39 378.8 31.0 440 28-517 927-1452(1724)
15 2j0s_A ATP-dependent RNA helic 100.0 3.6E-34 1.2E-38 329.9 28.1 314 28-404 60-386 (410)
16 4a4z_A Antiviral helicase SKI2 100.0 5.3E-34 1.8E-38 360.0 28.4 352 26-399 38-490 (997)
17 1hv8_A Putative ATP-dependent 100.0 1E-33 3.5E-38 319.9 27.7 310 27-405 28-349 (367)
18 2xgj_A ATP-dependent RNA helic 100.0 1.2E-32 4.2E-37 347.6 37.4 375 26-426 85-530 (1010)
19 1xti_A Probable ATP-dependent 100.0 4.3E-33 1.5E-37 318.3 29.9 314 28-402 31-358 (391)
20 3fmp_B ATP-dependent RNA helic 100.0 3.6E-34 1.2E-38 337.3 19.0 319 28-402 115-447 (479)
21 2ykg_A Probable ATP-dependent 100.0 3.6E-33 1.2E-37 343.9 28.6 380 24-426 10-551 (696)
22 3i5x_A ATP-dependent RNA helic 100.0 2.1E-33 7E-38 337.5 24.8 325 27-403 94-451 (563)
23 2z0m_A 337AA long hypothetical 100.0 6.1E-33 2.1E-37 310.0 25.9 300 27-400 16-322 (337)
24 2z83_A Helicase/nucleoside tri 100.0 1.1E-34 3.6E-39 339.5 11.8 289 36-401 15-313 (459)
25 3sqw_A ATP-dependent RNA helic 100.0 6.7E-33 2.3E-37 334.1 26.9 323 28-403 44-400 (579)
26 2jlq_A Serine protease subunit 100.0 1.5E-33 5E-38 329.2 19.7 288 35-399 11-309 (451)
27 1fuu_A Yeast initiation factor 100.0 8.9E-34 3E-38 324.1 16.1 317 27-406 43-371 (394)
28 2v1x_A ATP-dependent DNA helic 100.0 1.4E-32 4.7E-37 330.0 26.2 312 27-405 44-378 (591)
29 3rc3_A ATP-dependent RNA helic 100.0 1.9E-32 6.4E-37 331.1 21.9 364 40-499 153-531 (677)
30 3fho_A ATP-dependent RNA helic 100.0 6.4E-33 2.2E-37 328.9 16.8 316 28-400 142-469 (508)
31 1oyw_A RECQ helicase, ATP-depe 100.0 7.6E-32 2.6E-36 320.1 25.6 303 28-404 26-346 (523)
32 3tbk_A RIG-I helicase domain; 100.0 1.5E-31 5.1E-36 319.5 27.4 353 25-404 2-510 (555)
33 3i4u_A ATP-dependent RNA helic 100.0 1.2E-32 4E-37 296.8 15.0 214 435-697 2-253 (270)
34 4a2p_A RIG-I, retinoic acid in 100.0 3.1E-31 1.1E-35 317.2 27.7 353 25-404 5-511 (556)
35 1wp9_A ATP-dependent RNA helic 100.0 1.3E-31 4.4E-36 313.2 23.5 355 24-404 6-478 (494)
36 2whx_A Serine protease/ntpase/ 100.0 4.9E-32 1.7E-36 326.4 20.3 299 22-399 169-476 (618)
37 3oiy_A Reverse gyrase helicase 100.0 2.1E-31 7.1E-36 307.7 16.8 298 26-400 20-364 (414)
38 4gl2_A Interferon-induced heli 100.0 1.3E-31 4.3E-36 330.2 14.5 354 23-399 3-516 (699)
39 4a2q_A RIG-I, retinoic acid in 100.0 8.9E-30 3E-34 317.8 29.5 353 25-404 246-752 (797)
40 2v6i_A RNA helicase; membrane, 100.0 5.4E-30 1.8E-34 297.3 23.4 282 41-399 1-288 (431)
41 1yks_A Genome polyprotein [con 100.0 2.8E-30 9.4E-35 300.4 19.5 286 38-399 4-297 (440)
42 4a2w_A RIG-I, retinoic acid in 100.0 4.2E-29 1.4E-33 315.4 27.9 357 24-404 245-752 (936)
43 2wv9_A Flavivirin protease NS2 100.0 5.3E-30 1.8E-34 310.6 18.4 290 34-399 227-531 (673)
44 2eyq_A TRCF, transcription-rep 100.0 1.1E-27 3.8E-32 306.7 25.8 299 28-401 604-922 (1151)
45 1gm5_A RECG; helicase, replica 100.0 4E-29 1.4E-33 306.5 11.5 300 26-399 367-695 (780)
46 4ddu_A Reverse gyrase; topoiso 100.0 4.7E-28 1.6E-32 308.3 18.4 270 26-356 77-388 (1104)
47 2oca_A DAR protein, ATP-depend 99.9 3.9E-27 1.3E-31 279.4 23.2 319 26-399 112-453 (510)
48 2fwr_A DNA repair protein RAD2 99.9 4.2E-28 1.4E-32 284.9 14.7 323 24-401 90-454 (472)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-26 3.7E-31 295.9 15.1 261 30-355 59-352 (1054)
50 3h1t_A Type I site-specific re 99.9 8.3E-26 2.8E-30 272.9 18.8 330 25-391 176-545 (590)
51 1tf5_A Preprotein translocase 99.9 2.3E-25 7.8E-30 268.3 21.8 342 26-402 82-546 (844)
52 3llm_A ATP-dependent RNA helic 99.9 1.9E-25 6.4E-30 237.8 14.6 165 23-190 57-229 (235)
53 2fsf_A Preprotein translocase 99.9 4.6E-24 1.6E-28 256.2 22.5 106 276-402 441-584 (853)
54 1nkt_A Preprotein translocase 99.9 1.3E-23 4.5E-28 252.4 22.4 341 26-401 110-617 (922)
55 3eaq_A Heat resistant RNA depe 99.9 1.3E-22 4.3E-27 212.5 11.7 165 276-460 31-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 1.3E-21 4.4E-26 247.5 16.8 107 276-401 503-615 (968)
57 1z63_A Helicase of the SNF2/RA 99.9 4.4E-21 1.5E-25 226.8 19.7 344 25-402 35-454 (500)
58 3i32_A Heat resistant RNA depe 99.9 6.8E-22 2.3E-26 217.1 10.4 170 276-465 28-213 (300)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.6E-20 5.4E-25 236.1 19.3 334 26-399 270-707 (1038)
60 1z3i_X Similar to RAD54-like; 99.8 6.6E-18 2.3E-22 205.3 30.1 107 276-402 416-529 (644)
61 3mwy_W Chromo domain-containin 99.8 4.8E-19 1.6E-23 220.6 17.3 108 276-403 572-686 (800)
62 3jux_A Protein translocase sub 99.8 1.5E-17 5.1E-22 196.0 27.3 120 258-402 460-588 (822)
63 3iuy_A Probable ATP-dependent 99.8 5.1E-18 1.7E-22 179.1 19.1 153 27-182 42-211 (228)
64 3ber_A Probable ATP-dependent 99.8 5.6E-18 1.9E-22 181.6 18.0 154 27-182 65-230 (249)
65 1vec_A ATP-dependent RNA helic 99.8 1.5E-17 5.2E-22 172.3 19.9 155 27-182 25-190 (206)
66 1c4o_A DNA nucleotide excision 99.8 4.6E-17 1.6E-21 197.9 27.2 111 276-401 439-550 (664)
67 3bor_A Human initiation factor 99.8 9E-18 3.1E-22 178.6 18.0 153 28-182 53-217 (237)
68 1qde_A EIF4A, translation init 99.8 2.3E-17 7.7E-22 173.5 19.7 154 27-182 36-199 (224)
69 1q0u_A Bstdead; DEAD protein, 99.8 1.7E-17 6E-22 174.0 18.7 156 26-182 25-194 (219)
70 3fe2_A Probable ATP-dependent 99.7 1.1E-17 3.9E-22 178.3 16.9 153 28-182 52-220 (242)
71 3ly5_A ATP-dependent RNA helic 99.7 8.5E-18 2.9E-22 181.7 16.0 153 28-182 77-245 (262)
72 2gxq_A Heat resistant RNA depe 99.7 2.4E-17 8E-22 170.9 18.3 153 26-182 22-188 (207)
73 3fmo_B ATP-dependent RNA helic 99.7 3.3E-17 1.1E-21 180.5 19.7 155 27-182 114-280 (300)
74 2oxc_A Probable ATP-dependent 99.7 3.3E-17 1.1E-21 173.3 18.6 160 28-189 47-217 (230)
75 2pl3_A Probable ATP-dependent 99.7 4E-17 1.4E-21 173.2 18.6 155 26-182 46-215 (236)
76 1t6n_A Probable ATP-dependent 99.7 4.9E-17 1.7E-21 170.5 18.2 154 28-182 37-203 (220)
77 3dkp_A Probable ATP-dependent 99.7 9.6E-17 3.3E-21 171.2 19.6 160 27-189 51-229 (245)
78 1wrb_A DJVLGB; RNA helicase, D 99.7 2.5E-16 8.6E-21 168.9 19.4 154 27-182 45-222 (253)
79 2rb4_A ATP-dependent RNA helic 99.7 7.1E-17 2.4E-21 163.4 12.5 114 276-403 34-149 (175)
80 1fuk_A Eukaryotic initiation f 99.7 6.9E-17 2.4E-21 161.9 12.2 109 276-404 30-140 (165)
81 2hjv_A ATP-dependent RNA helic 99.7 7.4E-17 2.5E-21 161.3 11.9 109 276-404 35-145 (163)
82 3b6e_A Interferon-induced heli 99.7 3.7E-16 1.3E-20 162.6 14.1 154 22-178 28-216 (216)
83 2d7d_A Uvrabc system protein B 99.7 2.3E-16 7.8E-21 191.7 13.7 111 276-401 445-556 (661)
84 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.4E-16 4.9E-21 162.8 8.9 109 276-404 46-156 (185)
85 1t5i_A C_terminal domain of A 99.6 1.8E-16 6.3E-21 160.0 8.8 106 276-401 31-138 (172)
86 2p6n_A ATP-dependent RNA helic 99.6 3.4E-16 1.2E-20 160.8 9.7 106 276-401 54-161 (191)
87 2yjt_D ATP-dependent RNA helic 99.4 7.8E-17 2.7E-21 162.4 0.0 109 276-404 30-140 (170)
88 2ipc_A Preprotein translocase 99.5 2.5E-13 8.7E-18 163.1 22.1 120 26-148 78-213 (997)
89 2vl7_A XPD; helicase, unknown 99.5 3.3E-14 1.1E-18 169.2 13.3 126 261-397 372-518 (540)
90 1rif_A DAR protein, DNA helica 99.5 7.9E-14 2.7E-18 152.1 13.2 155 26-190 112-275 (282)
91 2fz4_A DNA repair protein RAD2 99.4 7.8E-13 2.7E-17 140.5 14.0 140 24-180 90-229 (237)
92 3crv_A XPD/RAD3 related DNA he 99.4 1.5E-10 5E-15 138.2 29.2 127 257-396 377-527 (551)
93 2cqe_A KIAA1064 protein; CCCH 99.3 2.5E-12 8.6E-17 115.8 5.5 51 734-788 10-60 (98)
94 2d9n_A Cleavage and polyadenyl 99.2 5E-12 1.7E-16 109.0 4.8 56 733-789 6-62 (77)
95 2rhk_C Cleavage and polyadenyl 99.2 4.6E-12 1.6E-16 107.4 3.2 56 733-789 12-68 (72)
96 1z5z_A Helicase of the SNF2/RA 99.2 5.3E-11 1.8E-15 128.8 10.3 122 259-403 99-226 (271)
97 1m9o_A Tristetraproline; Cys3H 99.1 1.7E-11 5.7E-16 106.2 3.7 57 732-788 7-74 (77)
98 3d2q_A Muscleblind-like protei 99.1 2.1E-11 7.2E-16 103.0 2.7 53 734-788 3-64 (70)
99 2e5s_A Otthump00000018578; ZF- 99.1 1.9E-11 6.5E-16 109.8 2.0 61 726-788 9-78 (98)
100 4a15_A XPD helicase, ATP-depen 98.9 4.8E-08 1.6E-12 117.7 23.0 127 259-397 434-581 (620)
101 3d2n_A Muscleblind-like protei 98.9 6E-10 2E-14 96.7 3.5 52 735-788 7-65 (83)
102 2rpp_A Muscleblind-like protei 98.9 9.2E-10 3.2E-14 96.5 4.2 58 729-788 9-73 (89)
103 1w36_D RECD, exodeoxyribonucle 98.0 1E-05 3.6E-10 97.2 10.7 140 29-178 151-298 (608)
104 3upu_A ATP-dependent DNA helic 98.0 1.2E-05 4E-10 93.5 10.5 62 27-88 25-94 (459)
105 2d9n_A Cleavage and polyadenyl 97.8 1.4E-05 4.7E-10 68.6 4.3 59 714-774 14-75 (77)
106 3e1s_A Exodeoxyribonuclease V, 97.6 7.8E-05 2.7E-09 88.8 8.6 64 25-88 187-252 (574)
107 4b3f_X DNA-binding protein smu 97.6 0.00013 4.4E-09 88.5 9.3 64 27-90 189-255 (646)
108 2gk6_A Regulator of nonsense t 97.3 0.00061 2.1E-08 82.1 11.0 64 27-90 180-246 (624)
109 2b8t_A Thymidine kinase; deoxy 97.3 0.0014 4.6E-08 68.2 11.5 113 40-177 10-124 (223)
110 2rhk_C Cleavage and polyadenyl 97.1 0.00017 6E-09 60.7 2.2 32 757-789 9-40 (72)
111 2cqe_A KIAA1064 protein; CCCH 97.0 0.0003 1E-08 63.1 3.2 32 755-787 2-35 (98)
112 2orw_A Thymidine kinase; TMTK, 96.9 0.0017 5.7E-08 65.5 7.8 37 41-77 2-40 (184)
113 3d2q_A Muscleblind-like protei 96.9 0.00051 1.8E-08 57.6 3.3 45 715-760 11-64 (70)
114 2d9m_A Zinc finger CCCH-type d 96.8 0.00063 2.2E-08 55.8 3.2 26 735-760 18-43 (69)
115 3u9g_A Zinc finger CCCH-type a 96.8 0.00056 1.9E-08 69.2 3.4 43 736-788 150-197 (229)
116 3te6_A Regulatory protein SIR3 96.8 0.0061 2.1E-07 66.7 11.9 44 137-181 132-175 (318)
117 2fc6_A Nuclear, target of EGR1 96.7 0.00093 3.2E-08 50.4 3.1 30 763-792 19-48 (50)
118 3lfu_A DNA helicase II; SF1 he 96.7 0.073 2.5E-06 64.0 21.8 66 27-94 9-80 (647)
119 1xx6_A Thymidine kinase; NESG, 96.7 0.0039 1.3E-07 63.2 8.5 37 41-77 7-45 (191)
120 3u9g_A Zinc finger CCCH-type a 96.6 0.00088 3E-08 67.8 3.3 51 737-788 89-178 (229)
121 3ec2_A DNA replication protein 96.6 0.0033 1.1E-07 62.7 7.0 35 29-63 16-59 (180)
122 2o0j_A Terminase, DNA packagin 96.5 0.031 1.1E-06 62.7 15.5 156 24-190 160-325 (385)
123 1m9o_A Tristetraproline; Cys3H 96.4 0.0017 5.8E-08 55.5 3.2 31 761-791 9-39 (77)
124 2lhn_A Nuclear polyadenylated 95.3 0.00061 2.1E-08 58.0 0.0 44 735-787 7-50 (80)
125 2e5s_A Otthump00000018578; ZF- 96.3 0.00086 2.9E-08 60.0 1.0 26 734-760 53-78 (98)
126 3vkw_A Replicase large subunit 96.3 0.0062 2.1E-07 69.3 8.1 108 43-178 162-269 (446)
127 2rpp_A Muscleblind-like protei 96.3 0.0018 6.2E-08 56.6 2.8 39 750-789 3-42 (89)
128 2w58_A DNAI, primosome compone 96.3 0.012 4.1E-07 59.6 9.4 21 43-63 55-75 (202)
129 3n70_A Transport activator; si 96.2 0.014 4.8E-07 56.0 9.3 28 32-59 14-41 (145)
130 3cpe_A Terminase, DNA packagin 96.1 0.056 1.9E-06 64.5 15.8 155 24-189 160-324 (592)
131 1njg_A DNA polymerase III subu 96.1 0.029 9.8E-07 57.5 11.3 33 31-63 31-66 (250)
132 2chg_A Replication factor C sm 96.1 0.017 5.8E-07 58.5 9.3 32 31-62 25-58 (226)
133 2zpa_A Uncharacterized protein 96.0 0.018 6.2E-07 68.8 10.4 113 27-180 175-289 (671)
134 1fnn_A CDC6P, cell division co 96.0 0.013 4.5E-07 65.5 8.6 23 446-468 328-350 (389)
135 2v1u_A Cell division control p 95.9 0.01 3.5E-07 66.3 7.6 24 445-468 327-350 (387)
136 2d9m_A Zinc finger CCCH-type d 95.9 0.0034 1.2E-07 51.5 2.5 32 755-788 12-43 (69)
137 3d2n_A Muscleblind-like protei 95.9 0.0046 1.6E-07 53.4 3.4 46 714-760 13-65 (83)
138 3bos_A Putative DNA replicatio 95.8 0.014 4.8E-07 60.3 7.3 22 41-62 51-72 (242)
139 3co5_A Putative two-component 95.8 0.015 5.2E-07 55.6 7.0 30 30-59 15-44 (143)
140 2orv_A Thymidine kinase; TP4A 95.8 0.027 9.2E-07 58.3 9.1 37 41-77 18-56 (234)
141 2qby_A CDC6 homolog 1, cell di 95.7 0.028 9.7E-07 62.5 10.1 23 42-64 45-67 (386)
142 2j9r_A Thymidine kinase; TK1, 95.6 0.011 3.9E-07 60.5 5.7 36 42-77 28-65 (214)
143 2qgz_A Helicase loader, putati 95.6 0.019 6.5E-07 62.6 7.9 20 42-61 152-171 (308)
144 2fc6_A Nuclear, target of EGR1 95.6 0.0068 2.3E-07 45.8 2.8 28 734-761 17-45 (50)
145 1jbk_A CLPB protein; beta barr 95.4 0.19 6.5E-06 49.2 13.8 32 31-62 30-63 (195)
146 2kjq_A DNAA-related protein; s 95.4 0.0041 1.4E-07 60.3 1.3 21 41-61 35-55 (149)
147 3syl_A Protein CBBX; photosynt 95.3 0.095 3.2E-06 56.6 12.1 42 137-178 130-178 (309)
148 1jr3_A DNA polymerase III subu 95.3 0.075 2.6E-06 58.9 11.5 31 33-63 26-59 (373)
149 2qen_A Walker-type ATPase; unk 95.2 0.19 6.5E-06 54.8 14.3 35 32-66 21-55 (350)
150 1l8q_A Chromosomal replication 95.1 0.082 2.8E-06 57.8 10.9 21 43-63 38-58 (324)
151 2xzl_A ATP-dependent helicase 95.0 0.028 9.5E-07 69.4 7.5 64 27-90 360-426 (802)
152 2wjy_A Regulator of nonsense t 95.0 0.038 1.3E-06 68.2 8.6 64 27-90 356-422 (800)
153 3kl4_A SRP54, signal recogniti 94.9 0.11 3.8E-06 59.2 11.3 128 43-189 98-235 (433)
154 2px0_A Flagellar biosynthesis 94.8 0.12 4.2E-06 55.9 11.1 125 42-190 105-235 (296)
155 3pfi_A Holliday junction ATP-d 94.7 0.09 3.1E-06 57.7 9.9 33 450-484 293-326 (338)
156 2lhn_A Nuclear polyadenylated 93.7 0.0055 1.9E-07 52.2 0.0 44 737-790 31-74 (80)
157 2qby_B CDC6 homolog 3, cell di 94.7 0.069 2.4E-06 59.5 9.1 24 445-468 315-338 (384)
158 3h4m_A Proteasome-activating n 94.6 0.14 4.8E-06 54.5 10.8 21 42-62 51-71 (285)
159 3dm5_A SRP54, signal recogniti 94.6 0.16 5.4E-06 57.9 11.6 128 43-189 101-236 (443)
160 1iqp_A RFCS; clamp loader, ext 94.6 0.15 5.1E-06 55.2 11.2 30 33-62 35-66 (327)
161 1a5t_A Delta prime, HOLB; zinc 94.6 0.12 4.3E-06 56.7 10.6 34 29-62 4-44 (334)
162 1sxj_C Activator 1 40 kDa subu 94.5 0.098 3.3E-06 57.6 9.6 29 34-62 36-66 (340)
163 3e2i_A Thymidine kinase; Zn-bi 94.5 0.036 1.2E-06 56.7 5.4 38 40-77 26-65 (219)
164 2fna_A Conserved hypothetical 94.4 0.16 5.4E-06 55.6 11.2 33 41-73 29-61 (357)
165 2bjv_A PSP operon transcriptio 94.4 0.078 2.7E-06 56.1 8.2 25 40-65 27-51 (265)
166 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.12 3.9E-06 54.3 9.4 21 43-63 40-60 (262)
167 1hqc_A RUVB; extended AAA-ATPa 94.4 0.14 4.8E-06 55.5 10.4 20 43-62 39-58 (324)
168 1w4r_A Thymidine kinase; type 94.3 0.042 1.4E-06 55.4 5.5 36 41-76 19-56 (195)
169 1d2n_A N-ethylmaleimide-sensit 94.3 0.2 6.8E-06 53.1 11.2 23 43-65 65-87 (272)
170 2z4s_A Chromosomal replication 94.3 0.21 7.1E-06 57.2 12.0 20 43-62 131-150 (440)
171 1w5s_A Origin recognition comp 94.1 0.05 1.7E-06 61.3 6.4 22 447-468 349-370 (412)
172 3b9p_A CG5977-PA, isoform A; A 93.8 0.24 8.4E-06 53.0 10.8 21 42-62 54-74 (297)
173 1lv7_A FTSH; alpha/beta domain 93.7 0.23 8E-06 52.0 10.3 22 42-63 45-66 (257)
174 3d8b_A Fidgetin-like protein 1 93.6 0.2 7E-06 55.5 10.0 24 42-65 117-140 (357)
175 3eie_A Vacuolar protein sortin 93.5 0.24 8.2E-06 54.1 10.2 23 43-65 52-74 (322)
176 2r2a_A Uncharacterized protein 93.5 0.21 7.2E-06 50.6 8.9 22 44-65 7-28 (199)
177 3u61_B DNA polymerase accessor 93.5 0.24 8.2E-06 53.9 10.1 39 137-176 105-143 (324)
178 3vfd_A Spastin; ATPase, microt 93.4 0.16 5.5E-06 57.0 8.8 21 42-62 148-168 (389)
179 1sxj_A Activator 1 95 kDa subu 93.2 0.34 1.2E-05 56.7 11.3 25 43-67 78-102 (516)
180 1vma_A Cell division protein F 93.1 0.24 8.2E-06 53.8 9.1 118 42-179 104-234 (306)
181 3cf0_A Transitional endoplasmi 92.9 0.68 2.3E-05 49.9 12.5 26 42-67 49-74 (301)
182 1sxj_E Activator 1 40 kDa subu 92.9 0.31 1E-05 53.6 9.9 40 137-178 134-173 (354)
183 1sxj_D Activator 1 41 kDa subu 92.8 0.11 3.9E-06 57.0 6.3 29 33-61 47-77 (353)
184 1ojl_A Transcriptional regulat 92.8 0.12 4.2E-06 56.0 6.4 25 40-65 23-47 (304)
185 3pxi_A Negative regulator of g 92.7 0.38 1.3E-05 59.0 11.4 16 44-59 523-538 (758)
186 1sxj_B Activator 1 37 kDa subu 92.7 0.26 8.9E-06 53.2 8.8 31 32-62 30-62 (323)
187 2qp9_X Vacuolar protein sortin 92.5 0.28 9.7E-06 54.4 9.0 25 43-67 85-109 (355)
188 2chq_A Replication factor C sm 92.4 0.18 6.1E-06 54.4 7.0 19 44-62 40-58 (319)
189 1xwi_A SKD1 protein; VPS4B, AA 92.2 0.36 1.2E-05 52.8 9.2 23 43-65 46-68 (322)
190 2gno_A DNA polymerase III, gam 92.1 0.55 1.9E-05 50.9 10.4 50 124-176 70-119 (305)
191 3pvs_A Replication-associated 91.8 0.16 5.4E-06 58.3 5.9 25 36-60 42-68 (447)
192 3u1l_A PRE-mRNA-splicing facto 91.5 0.047 1.6E-06 57.0 0.9 23 738-760 71-93 (240)
193 4fcw_A Chaperone protein CLPB; 91.4 0.21 7.1E-06 53.9 6.1 20 43-62 48-67 (311)
194 2ce7_A Cell division protein F 91.1 0.46 1.6E-05 54.8 8.9 21 43-63 50-70 (476)
195 4b4t_J 26S protease regulatory 91.1 0.51 1.7E-05 53.0 8.9 17 43-59 183-199 (405)
196 3hu3_A Transitional endoplasmi 91.0 0.43 1.5E-05 55.3 8.6 20 43-62 239-258 (489)
197 3t15_A Ribulose bisphosphate c 90.9 0.8 2.7E-05 49.2 10.1 25 43-67 37-61 (293)
198 3hgt_A HDA1 complex subunit 3; 90.9 1.3 4.3E-05 48.2 11.5 119 258-401 111-237 (328)
199 3k1j_A LON protease, ATP-depen 90.6 1.4 4.6E-05 52.6 12.7 31 33-63 51-81 (604)
200 3b85_A Phosphate starvation-in 90.3 0.23 7.9E-06 50.7 4.8 37 27-63 7-43 (208)
201 3u4q_A ATP-dependent helicase/ 89.9 0.28 9.5E-06 63.7 6.2 67 25-93 8-82 (1232)
202 4b4t_H 26S protease regulatory 89.6 0.64 2.2E-05 53.0 8.1 17 43-59 244-260 (467)
203 2zan_A Vacuolar protein sortin 89.5 0.94 3.2E-05 51.8 9.7 24 43-66 168-191 (444)
204 1um8_A ATP-dependent CLP prote 89.5 0.58 2E-05 52.1 7.8 20 42-61 72-91 (376)
205 1uaa_A REP helicase, protein ( 89.1 0.33 1.1E-05 58.7 5.8 64 28-93 3-72 (673)
206 4b4t_M 26S protease regulatory 89.0 0.68 2.3E-05 52.6 7.8 17 43-59 216-232 (434)
207 1kgd_A CASK, peripheral plasma 88.8 0.24 8.1E-06 49.1 3.5 23 41-63 4-26 (180)
208 4b4t_L 26S protease subunit RP 88.8 0.85 2.9E-05 51.9 8.5 17 43-59 216-232 (437)
209 4b4t_K 26S protease regulatory 88.7 1 3.5E-05 51.1 9.1 17 43-59 207-223 (428)
210 2gza_A Type IV secretion syste 88.5 0.25 8.5E-06 55.0 3.8 28 38-65 171-198 (361)
211 1pjr_A PCRA; DNA repair, DNA r 88.0 0.55 1.9E-05 57.3 6.7 101 28-147 12-120 (724)
212 4b4t_I 26S protease regulatory 87.9 1.4 4.7E-05 49.8 9.3 17 43-59 217-233 (437)
213 1p9r_A General secretion pathw 87.6 0.39 1.4E-05 54.4 4.8 40 25-64 148-189 (418)
214 2eyu_A Twitching motility prot 87.6 0.19 6.6E-06 53.2 2.0 25 39-63 22-46 (261)
215 1lvg_A Guanylate kinase, GMP k 87.4 0.3 1E-05 49.2 3.2 23 41-63 3-25 (198)
216 2oap_1 GSPE-2, type II secreti 87.3 0.41 1.4E-05 55.8 4.8 26 38-63 256-281 (511)
217 2yhs_A FTSY, cell division pro 87.3 1.9 6.5E-05 49.7 10.1 33 42-74 293-327 (503)
218 1r6b_X CLPA protein; AAA+, N-t 87.3 1.3 4.4E-05 54.3 9.5 17 44-60 490-506 (758)
219 3e70_C DPA, signal recognition 87.2 1 3.6E-05 49.2 7.7 121 42-180 129-254 (328)
220 3u1l_A PRE-mRNA-splicing facto 87.0 0.14 4.8E-06 53.4 0.5 23 765-788 71-93 (240)
221 3tr0_A Guanylate kinase, GMP k 87.0 0.29 1E-05 49.1 2.9 23 40-62 5-27 (205)
222 2pt7_A CAG-ALFA; ATPase, prote 86.9 0.29 9.9E-06 53.7 3.0 26 38-63 167-192 (330)
223 3tau_A Guanylate kinase, GMP k 86.8 0.37 1.2E-05 48.9 3.5 23 41-63 7-29 (208)
224 1znw_A Guanylate kinase, GMP k 86.2 0.33 1.1E-05 49.2 2.8 25 38-62 16-40 (207)
225 3cf2_A TER ATPase, transitiona 86.1 0.98 3.3E-05 55.3 7.3 19 43-61 239-257 (806)
226 3ney_A 55 kDa erythrocyte memb 86.0 0.43 1.5E-05 48.2 3.5 23 41-63 18-40 (197)
227 1qvr_A CLPB protein; coiled co 86.0 1 3.5E-05 56.0 7.6 16 44-59 590-605 (854)
228 1z6g_A Guanylate kinase; struc 85.9 0.41 1.4E-05 49.1 3.3 25 39-63 20-44 (218)
229 3a00_A Guanylate kinase, GMP k 85.3 0.45 1.5E-05 47.2 3.3 22 42-63 1-22 (186)
230 2j41_A Guanylate kinase; GMP, 85.2 0.4 1.4E-05 48.1 2.9 24 39-62 3-26 (207)
231 1zp6_A Hypothetical protein AT 85.0 0.38 1.3E-05 47.7 2.5 25 39-63 6-30 (191)
232 4gp7_A Metallophosphoesterase; 85.0 0.35 1.2E-05 47.5 2.2 21 41-61 8-28 (171)
233 3vaa_A Shikimate kinase, SK; s 84.4 0.69 2.4E-05 46.4 4.2 27 39-65 22-48 (199)
234 3jvv_A Twitching mobility prot 84.2 0.41 1.4E-05 53.1 2.6 23 41-63 122-144 (356)
235 2p65_A Hypothetical protein PF 83.9 0.67 2.3E-05 45.1 3.8 31 33-63 32-64 (187)
236 2dhr_A FTSH; AAA+ protein, hex 83.4 4.1 0.00014 47.2 10.6 20 43-62 65-84 (499)
237 2ewv_A Twitching motility prot 83.4 0.5 1.7E-05 52.8 2.8 25 39-63 133-157 (372)
238 3umf_A Adenylate kinase; rossm 83.2 0.6 2E-05 47.9 3.1 29 40-68 27-55 (217)
239 1s96_A Guanylate kinase, GMP k 83.0 0.68 2.3E-05 47.6 3.5 26 38-63 12-37 (219)
240 2qor_A Guanylate kinase; phosp 82.5 0.72 2.4E-05 46.5 3.4 24 39-62 9-32 (204)
241 3exa_A TRNA delta(2)-isopenten 82.4 0.68 2.3E-05 50.2 3.3 20 42-61 3-22 (322)
242 1ypw_A Transitional endoplasmi 82.4 1.3 4.3E-05 54.8 6.2 21 42-62 238-258 (806)
243 1qvr_A CLPB protein; coiled co 82.3 3.4 0.00012 51.2 10.1 29 33-61 180-210 (854)
244 1ls1_A Signal recognition part 82.1 7.4 0.00025 41.6 11.4 122 42-180 98-223 (295)
245 3trf_A Shikimate kinase, SK; a 81.9 0.99 3.4E-05 44.3 4.1 22 42-63 5-26 (185)
246 3lw7_A Adenylate kinase relate 81.8 0.81 2.8E-05 44.0 3.4 20 43-62 2-21 (179)
247 1kht_A Adenylate kinase; phosp 81.7 0.79 2.7E-05 45.1 3.3 22 42-63 3-24 (192)
248 1nij_A Hypothetical protein YJ 81.4 0.86 3E-05 49.6 3.8 34 43-76 5-38 (318)
249 1kag_A SKI, shikimate kinase I 81.3 0.7 2.4E-05 44.9 2.7 21 42-62 4-24 (173)
250 2ehv_A Hypothetical protein PH 81.1 0.86 2.9E-05 47.0 3.5 25 39-63 27-51 (251)
251 3a8t_A Adenylate isopentenyltr 81.1 0.74 2.5E-05 50.4 3.0 18 42-59 40-57 (339)
252 3sr0_A Adenylate kinase; phosp 81.1 0.85 2.9E-05 46.4 3.3 25 44-68 2-26 (206)
253 1ex7_A Guanylate kinase; subst 80.9 0.99 3.4E-05 45.1 3.6 21 43-63 2-22 (186)
254 3m6a_A ATP-dependent protease 80.8 1.1 3.8E-05 52.6 4.7 20 42-61 108-127 (543)
255 2j37_W Signal recognition part 80.6 5.6 0.00019 46.0 10.4 118 44-179 103-225 (504)
256 3lnc_A Guanylate kinase, GMP k 80.5 0.66 2.2E-05 47.7 2.3 23 40-62 25-47 (231)
257 2qmh_A HPR kinase/phosphorylas 80.3 0.79 2.7E-05 46.3 2.7 23 41-63 33-55 (205)
258 3tif_A Uncharacterized ABC tra 80.2 0.78 2.7E-05 47.6 2.7 23 40-62 29-51 (235)
259 2ffh_A Protein (FFH); SRP54, s 80.2 7.3 0.00025 44.0 10.9 118 43-179 99-222 (425)
260 2cvh_A DNA repair and recombin 80.1 1.2 4.2E-05 44.8 4.2 35 40-74 18-52 (220)
261 1zd8_A GTP:AMP phosphotransfer 79.9 1.1 3.7E-05 45.9 3.8 27 41-67 6-32 (227)
262 2ze6_A Isopentenyl transferase 79.8 1.1 3.9E-05 46.9 3.9 20 44-63 3-22 (253)
263 4eun_A Thermoresistant glucoki 79.6 1.1 3.7E-05 44.9 3.5 22 41-62 28-49 (200)
264 3c8u_A Fructokinase; YP_612366 79.2 0.87 3E-05 46.0 2.7 21 41-61 21-41 (208)
265 1r6b_X CLPA protein; AAA+, N-t 79.1 3.6 0.00012 50.3 8.6 19 42-60 207-225 (758)
266 1gvn_B Zeta; postsegregational 79.0 2.3 7.8E-05 45.5 6.0 23 43-65 34-56 (287)
267 3kb2_A SPBC2 prophage-derived 78.9 1.4 4.7E-05 42.5 3.9 20 44-63 3-22 (173)
268 3foz_A TRNA delta(2)-isopenten 78.8 1.1 3.8E-05 48.4 3.5 19 43-61 11-29 (316)
269 2dr3_A UPF0273 protein PH0284; 78.8 1.2 4.2E-05 45.7 3.7 26 40-65 21-46 (247)
270 3cm0_A Adenylate kinase; ATP-b 78.7 0.83 2.9E-05 44.9 2.3 25 41-65 3-27 (186)
271 1ixz_A ATP-dependent metallopr 78.7 3.8 0.00013 42.5 7.6 24 43-66 50-73 (254)
272 4a74_A DNA repair and recombin 78.6 0.97 3.3E-05 45.9 2.8 25 40-64 23-47 (231)
273 2bwj_A Adenylate kinase 5; pho 78.5 1.3 4.3E-05 44.0 3.6 30 38-67 8-37 (199)
274 1qhx_A CPT, protein (chloramph 78.4 1.9 6.4E-05 41.9 4.8 21 42-62 3-23 (178)
275 3iij_A Coilin-interacting nucl 78.4 1.1 3.9E-05 43.8 3.2 23 41-63 10-32 (180)
276 2w0m_A SSO2452; RECA, SSPF, un 78.3 1.2 4.1E-05 45.2 3.4 26 39-64 20-45 (235)
277 2c95_A Adenylate kinase 1; tra 78.2 1.5 5E-05 43.4 4.0 29 39-67 6-34 (196)
278 2cbz_A Multidrug resistance-as 78.1 0.99 3.4E-05 46.9 2.7 23 40-62 29-51 (237)
279 1ofh_A ATP-dependent HSL prote 78.0 3 0.0001 44.3 6.7 21 42-62 50-70 (310)
280 3tlx_A Adenylate kinase 2; str 77.9 1.2 4E-05 46.4 3.2 26 42-67 29-54 (243)
281 3cf2_A TER ATPase, transitiona 77.7 3.8 0.00013 50.2 8.0 23 43-65 512-534 (806)
282 2zts_A Putative uncharacterize 77.6 1.4 4.8E-05 45.3 3.7 25 41-65 29-53 (251)
283 1g5t_A COB(I)alamin adenosyltr 77.6 1.7 5.7E-05 43.8 4.1 35 41-76 27-64 (196)
284 2pcj_A ABC transporter, lipopr 77.5 1.1 3.7E-05 46.2 2.8 22 40-61 28-49 (224)
285 3fb4_A Adenylate kinase; psych 77.3 1.5 5.2E-05 44.2 3.8 24 44-67 2-25 (216)
286 1ly1_A Polynucleotide kinase; 77.2 1.2 4.2E-05 43.2 3.0 21 43-63 3-23 (181)
287 3gfo_A Cobalt import ATP-bindi 77.1 1.1 3.7E-05 47.8 2.7 23 40-62 32-54 (275)
288 1htw_A HI0065; nucleotide-bind 77.1 1.6 5.6E-05 42.2 3.8 23 40-62 31-53 (158)
289 2v54_A DTMP kinase, thymidylat 77.1 1.3 4.6E-05 44.0 3.3 36 41-76 3-39 (204)
290 3dl0_A Adenylate kinase; phosp 77.1 1.6 5.6E-05 44.0 4.0 24 44-67 2-25 (216)
291 1knq_A Gluconate kinase; ALFA/ 77.0 1.2 3.9E-05 43.5 2.7 21 42-62 8-28 (175)
292 1sgw_A Putative ABC transporte 76.8 1.1 3.9E-05 45.7 2.7 23 40-62 33-55 (214)
293 2bdt_A BH3686; alpha-beta prot 76.7 1.1 3.6E-05 44.4 2.4 21 43-63 3-23 (189)
294 2v9p_A Replication protein E1; 76.7 1 3.5E-05 48.7 2.4 33 40-73 124-156 (305)
295 1tev_A UMP-CMP kinase; ploop, 76.5 1.4 4.6E-05 43.5 3.1 23 42-64 3-25 (196)
296 2pze_A Cystic fibrosis transme 76.5 1.2 4.1E-05 46.0 2.8 23 40-62 32-54 (229)
297 3asz_A Uridine kinase; cytidin 76.5 1.2 4.3E-05 44.7 2.9 22 41-62 5-26 (211)
298 3cmu_A Protein RECA, recombina 76.5 2.5 8.7E-05 56.5 6.4 31 36-66 1415-1451(2050)
299 1ye8_A Protein THEP1, hypothet 76.4 1.5 5.1E-05 43.4 3.3 20 44-63 2-21 (178)
300 1j8m_F SRP54, signal recogniti 76.3 3.8 0.00013 44.0 6.9 119 43-179 99-224 (297)
301 2rhm_A Putative kinase; P-loop 76.2 1.6 5.5E-05 43.0 3.6 26 42-67 5-30 (193)
302 2ff7_A Alpha-hemolysin translo 76.0 1.2 4.2E-05 46.5 2.7 23 40-62 33-55 (247)
303 1g6h_A High-affinity branched- 75.9 1.2 4.2E-05 46.8 2.7 22 40-61 31-52 (257)
304 1y63_A LMAJ004144AAA protein; 75.8 1.5 5.1E-05 43.3 3.2 22 41-62 9-30 (184)
305 2i3b_A HCR-ntpase, human cance 75.8 1.6 5.4E-05 43.7 3.4 21 42-62 1-21 (189)
306 1b0u_A Histidine permease; ABC 75.7 1.3 4.4E-05 46.8 2.8 23 40-62 30-52 (262)
307 1zu4_A FTSY; GTPase, signal re 75.6 12 0.00042 40.4 10.8 20 43-62 106-125 (320)
308 1zuh_A Shikimate kinase; alpha 75.6 2 6.7E-05 41.5 4.0 26 43-68 8-33 (168)
309 1n0w_A DNA repair protein RAD5 75.6 1.6 5.3E-05 44.8 3.4 26 40-65 22-47 (243)
310 2ghi_A Transport protein; mult 75.6 1.3 4.3E-05 46.8 2.7 24 39-62 43-66 (260)
311 3t61_A Gluconokinase; PSI-biol 75.6 1.8 6.2E-05 43.2 3.8 21 43-63 19-39 (202)
312 2f1r_A Molybdopterin-guanine d 75.6 1.1 3.6E-05 44.2 2.0 21 43-63 3-23 (171)
313 4g1u_C Hemin import ATP-bindin 75.5 1.3 4.4E-05 46.9 2.8 23 40-62 35-57 (266)
314 1ji0_A ABC transporter; ATP bi 75.5 1.3 4.4E-05 46.1 2.7 23 40-62 30-52 (240)
315 3nh6_A ATP-binding cassette SU 75.4 1.1 3.7E-05 48.6 2.2 23 40-62 78-100 (306)
316 2r44_A Uncharacterized protein 75.2 3.2 0.00011 44.9 6.0 31 32-62 36-66 (331)
317 1mv5_A LMRA, multidrug resista 75.2 1.2 3.9E-05 46.5 2.3 23 40-62 26-48 (243)
318 2z0h_A DTMP kinase, thymidylat 75.0 2.3 7.8E-05 42.0 4.4 20 44-63 2-21 (197)
319 3uie_A Adenylyl-sulfate kinase 74.9 1.5 5E-05 43.9 2.9 22 40-61 23-44 (200)
320 1vpl_A ABC transporter, ATP-bi 74.9 1.4 4.7E-05 46.4 2.8 23 40-62 39-61 (256)
321 2olj_A Amino acid ABC transpor 74.5 1.4 4.9E-05 46.5 2.8 23 40-62 48-70 (263)
322 2v3c_C SRP54, signal recogniti 74.4 1.7 5.8E-05 49.4 3.6 22 43-64 100-121 (432)
323 2d2e_A SUFC protein; ABC-ATPas 74.4 1.4 4.9E-05 46.1 2.7 23 40-62 27-49 (250)
324 1xjc_A MOBB protein homolog; s 74.4 1.8 6.2E-05 42.4 3.3 22 43-64 5-26 (169)
325 3crm_A TRNA delta(2)-isopenten 74.3 1.8 6.3E-05 47.0 3.7 17 43-59 6-22 (323)
326 2zu0_C Probable ATP-dependent 74.3 1.4 4.9E-05 46.5 2.8 24 39-62 43-66 (267)
327 1cke_A CK, MSSA, protein (cyti 74.2 1.7 5.8E-05 44.1 3.3 22 42-63 5-26 (227)
328 1rz3_A Hypothetical protein rb 74.2 2.4 8.2E-05 42.5 4.3 30 33-62 8-42 (201)
329 3d3q_A TRNA delta(2)-isopenten 74.1 1.8 6.2E-05 47.4 3.6 17 43-59 8-24 (340)
330 1gm5_A RECG; helicase, replica 74.1 3.1 0.00011 50.9 6.0 75 276-350 417-495 (780)
331 1nlf_A Regulatory protein REPA 74.0 1.7 5.9E-05 46.0 3.4 26 39-64 27-52 (279)
332 1cr0_A DNA primase/helicase; R 74.0 1.7 6E-05 46.3 3.4 26 39-64 32-57 (296)
333 3kta_A Chromosome segregation 73.9 1.8 6.3E-05 42.3 3.3 21 43-63 27-47 (182)
334 2ixe_A Antigen peptide transpo 73.8 1.5 5.1E-05 46.6 2.7 24 39-62 42-65 (271)
335 3b9q_A Chloroplast SRP recepto 73.7 1.6 5.4E-05 47.1 3.0 22 42-63 100-121 (302)
336 2jaq_A Deoxyguanosine kinase; 73.7 1.8 6E-05 43.0 3.2 20 44-63 2-21 (205)
337 1e4v_A Adenylate kinase; trans 73.7 2.1 7.2E-05 43.2 3.8 24 44-67 2-25 (214)
338 2ihy_A ABC transporter, ATP-bi 73.7 1.5 5.2E-05 46.7 2.8 22 40-61 45-66 (279)
339 1nks_A Adenylate kinase; therm 73.6 1.7 5.8E-05 42.6 3.0 20 44-63 3-22 (194)
340 2yz2_A Putative ABC transporte 73.6 1.5 5.2E-05 46.3 2.7 22 40-61 31-52 (266)
341 1m7g_A Adenylylsulfate kinase; 73.6 1.9 6.4E-05 43.6 3.3 33 29-62 13-45 (211)
342 2vp4_A Deoxynucleoside kinase; 73.5 1.3 4.6E-05 45.5 2.2 22 41-62 19-40 (230)
343 2qi9_C Vitamin B12 import ATP- 73.5 1.6 5.4E-05 45.8 2.8 23 40-62 24-46 (249)
344 2plr_A DTMP kinase, probable t 73.5 1.6 5.5E-05 43.6 2.8 24 41-64 3-26 (213)
345 1np6_A Molybdopterin-guanine d 73.4 2 6.7E-05 42.4 3.3 22 43-64 7-28 (174)
346 2pez_A Bifunctional 3'-phospho 73.4 1.7 5.7E-05 42.6 2.8 22 41-62 4-25 (179)
347 2nq2_C Hypothetical ABC transp 73.4 1.6 5.3E-05 45.9 2.7 23 40-62 29-51 (253)
348 1rj9_A FTSY, signal recognitio 73.4 1.8 6.2E-05 46.7 3.3 22 42-63 102-123 (304)
349 1e9r_A Conjugal transfer prote 73.3 2.1 7.2E-05 48.5 4.1 40 41-80 52-93 (437)
350 2qt1_A Nicotinamide riboside k 73.2 1.7 5.8E-05 43.6 2.9 22 41-62 20-41 (207)
351 3hws_A ATP-dependent CLP prote 73.1 4.6 0.00016 44.4 6.7 21 41-61 50-70 (363)
352 2cdn_A Adenylate kinase; phosp 73.0 2.6 8.7E-05 42.1 4.2 25 43-67 21-45 (201)
353 1aky_A Adenylate kinase; ATP:A 72.9 2.2 7.5E-05 43.3 3.7 26 42-67 4-29 (220)
354 2bbw_A Adenylate kinase 4, AK4 72.8 2 7E-05 44.4 3.5 27 41-67 26-52 (246)
355 1gtv_A TMK, thymidylate kinase 72.4 1.2 4E-05 44.8 1.5 20 44-63 2-21 (214)
356 4ag6_A VIRB4 ATPase, type IV s 72.4 2.4 8.1E-05 47.4 4.1 37 41-77 34-72 (392)
357 1f2t_A RAD50 ABC-ATPase; DNA d 72.2 2.2 7.6E-05 40.7 3.3 20 43-62 24-43 (149)
358 2wwf_A Thymidilate kinase, put 72.1 2 7E-05 42.9 3.2 22 41-62 9-30 (212)
359 3nbx_X ATPase RAVA; AAA+ ATPas 72.0 2.7 9.2E-05 48.7 4.5 29 32-60 31-59 (500)
360 1ukz_A Uridylate kinase; trans 71.8 2.4 8.4E-05 42.2 3.7 25 43-67 16-40 (203)
361 3eph_A TRNA isopentenyltransfe 71.7 1.8 6.2E-05 48.5 2.9 17 43-59 3-19 (409)
362 1in4_A RUVB, holliday junction 71.7 2.3 7.9E-05 46.4 3.7 34 451-486 291-325 (334)
363 2l8b_A Protein TRAI, DNA helic 71.7 6.9 0.00023 38.7 6.6 63 24-86 31-98 (189)
364 1e6c_A Shikimate kinase; phosp 71.6 2.1 7.2E-05 41.3 3.0 21 43-63 3-23 (173)
365 3tqc_A Pantothenate kinase; bi 71.6 3.2 0.00011 45.2 4.7 18 44-61 94-111 (321)
366 2yvu_A Probable adenylyl-sulfa 71.5 1.9 6.6E-05 42.4 2.8 22 41-62 12-33 (186)
367 1zak_A Adenylate kinase; ATP:A 71.5 2.5 8.4E-05 43.0 3.7 25 43-67 6-30 (222)
368 1nn5_A Similar to deoxythymidy 71.3 2.2 7.6E-05 42.7 3.2 23 41-63 8-30 (215)
369 2vli_A Antibiotic resistance p 71.0 2.6 8.8E-05 41.1 3.6 28 41-68 4-31 (183)
370 1qf9_A UMP/CMP kinase, protein 70.9 2.1 7.2E-05 41.9 2.9 25 43-67 7-31 (194)
371 3be4_A Adenylate kinase; malar 70.5 2.7 9.3E-05 42.6 3.8 26 42-67 5-30 (217)
372 4e22_A Cytidylate kinase; P-lo 70.5 2 6.8E-05 44.9 2.8 23 41-63 26-48 (252)
373 4eaq_A DTMP kinase, thymidylat 70.3 2.2 7.5E-05 43.9 3.0 23 41-63 25-47 (229)
374 2bbs_A Cystic fibrosis transme 70.2 2 6.9E-05 46.1 2.7 22 41-62 63-84 (290)
375 3a4m_A L-seryl-tRNA(SEC) kinas 70.1 3.3 0.00011 43.4 4.4 21 42-62 4-24 (260)
376 2iyv_A Shikimate kinase, SK; t 70.0 3.1 0.00011 40.6 4.0 25 43-67 3-27 (184)
377 2if2_A Dephospho-COA kinase; a 69.9 2.1 7E-05 42.8 2.6 18 44-61 3-20 (204)
378 3nwj_A ATSK2; P loop, shikimat 69.9 3.1 0.00011 43.5 4.1 22 42-63 48-69 (250)
379 2d7d_A Uvrabc system protein B 69.8 6.7 0.00023 47.1 7.5 69 24-93 9-82 (661)
380 1ak2_A Adenylate kinase isoenz 69.7 2.8 9.6E-05 43.0 3.7 26 42-67 16-41 (233)
381 2pt5_A Shikimate kinase, SK; a 69.6 3.2 0.00011 39.8 3.9 24 44-67 2-25 (168)
382 3fvq_A Fe(3+) IONS import ATP- 69.3 2.1 7.2E-05 47.3 2.7 23 40-62 28-50 (359)
383 3oiy_A Reverse gyrase helicase 69.2 4.2 0.00014 45.5 5.3 75 276-350 64-144 (414)
384 2pbr_A DTMP kinase, thymidylat 69.2 2.5 8.7E-05 41.4 3.1 19 44-62 2-20 (195)
385 2pjz_A Hypothetical protein ST 69.0 2.2 7.5E-05 45.0 2.7 21 42-62 30-50 (263)
386 2a5j_A RAS-related protein RAB 68.9 3.9 0.00013 40.1 4.4 22 44-65 23-44 (191)
387 2onk_A Molybdate/tungstate ABC 68.9 2.2 7.4E-05 44.4 2.6 20 43-62 25-44 (240)
388 2og2_A Putative signal recogni 68.7 2.3 8E-05 47.0 2.9 22 42-63 157-178 (359)
389 2xb4_A Adenylate kinase; ATP-b 68.7 2.5 8.6E-05 43.1 3.0 24 44-67 2-25 (223)
390 1z47_A CYSA, putative ABC-tran 68.3 2.3 7.8E-05 47.0 2.7 23 40-62 39-61 (355)
391 3tmk_A Thymidylate kinase; pho 68.2 4.6 0.00016 41.2 4.8 25 41-65 4-28 (216)
392 1tq4_A IIGP1, interferon-induc 68.1 3.4 0.00012 46.6 4.1 20 44-63 71-90 (413)
393 3rlf_A Maltose/maltodextrin im 68.0 2.4 8.1E-05 47.3 2.8 23 40-62 27-49 (381)
394 2p5t_B PEZT; postsegregational 67.8 3 0.0001 43.5 3.4 22 43-64 33-54 (253)
395 3aez_A Pantothenate kinase; tr 67.7 2.6 8.9E-05 45.7 3.0 21 41-61 89-109 (312)
396 2xxa_A Signal recognition part 67.4 13 0.00044 42.1 8.8 118 43-178 101-224 (433)
397 1iy2_A ATP-dependent metallopr 67.3 4.1 0.00014 43.0 4.4 24 43-66 74-97 (278)
398 3qf7_A RAD50; ABC-ATPase, ATPa 67.3 2.8 9.4E-05 46.5 3.2 19 44-62 25-43 (365)
399 2it1_A 362AA long hypothetical 67.3 2.5 8.5E-05 46.8 2.8 23 40-62 27-49 (362)
400 2z43_A DNA repair and recombin 67.3 3.9 0.00013 44.3 4.4 26 41-66 106-131 (324)
401 3sop_A Neuronal-specific septi 67.2 2.3 7.7E-05 45.1 2.4 20 44-63 4-23 (270)
402 2jeo_A Uridine-cytidine kinase 67.2 2.2 7.6E-05 44.2 2.3 23 40-62 23-45 (245)
403 1via_A Shikimate kinase; struc 67.2 3 0.0001 40.5 3.1 19 43-61 5-23 (175)
404 2yyz_A Sugar ABC transporter, 67.1 2.5 8.5E-05 46.8 2.7 23 40-62 27-49 (359)
405 4edh_A DTMP kinase, thymidylat 67.0 4.5 0.00015 41.1 4.5 23 40-62 4-26 (213)
406 1odf_A YGR205W, hypothetical 3 66.7 4.7 0.00016 43.1 4.7 18 43-60 32-49 (290)
407 1pui_A ENGB, probable GTP-bind 66.7 2.3 7.9E-05 42.3 2.2 21 41-61 25-45 (210)
408 3bh0_A DNAB-like replicative h 66.4 3.5 0.00012 44.6 3.7 27 39-65 65-91 (315)
409 1jjv_A Dephospho-COA kinase; P 66.3 3 0.0001 41.7 3.0 19 44-62 4-22 (206)
410 4tmk_A Protein (thymidylate ki 66.2 3.5 0.00012 42.0 3.5 22 41-62 2-23 (213)
411 3d31_A Sulfate/molybdate ABC t 66.2 2.3 8E-05 46.8 2.3 23 40-62 24-46 (348)
412 3uk6_A RUVB-like 2; hexameric 66.0 5.1 0.00017 43.9 5.1 23 43-65 71-93 (368)
413 1g29_1 MALK, maltose transport 65.9 2.7 9.3E-05 46.7 2.7 23 40-62 27-49 (372)
414 1v43_A Sugar-binding transport 65.8 2.8 9.5E-05 46.6 2.8 23 40-62 35-57 (372)
415 2vhj_A Ntpase P4, P4; non- hyd 65.8 2.6 9E-05 45.8 2.5 25 41-65 122-146 (331)
416 3auy_A DNA double-strand break 65.5 3 0.0001 46.2 3.0 21 43-63 26-46 (371)
417 2x8a_A Nuclear valosin-contain 65.4 4 0.00014 43.2 3.9 20 43-62 45-64 (274)
418 2h17_A ADP-ribosylation factor 65.2 3 0.0001 40.5 2.6 23 43-65 22-44 (181)
419 1uf9_A TT1252 protein; P-loop, 64.9 3.3 0.00011 40.9 3.0 20 43-62 9-28 (203)
420 3thx_A DNA mismatch repair pro 64.8 3 0.0001 52.1 3.0 22 41-62 661-682 (934)
421 2gxq_A Heat resistant RNA depe 64.7 10 0.00036 37.3 6.7 72 276-350 72-149 (207)
422 1vht_A Dephospho-COA kinase; s 64.3 3.5 0.00012 41.6 3.0 20 43-62 5-24 (218)
423 1g8p_A Magnesium-chelatase 38 64.1 4 0.00014 44.3 3.6 22 41-62 44-65 (350)
424 3tui_C Methionine import ATP-b 64.1 3.2 0.00011 46.0 2.8 24 39-62 51-74 (366)
425 2dyk_A GTP-binding protein; GT 64.0 3.9 0.00013 38.3 3.2 22 44-65 3-24 (161)
426 2v26_A Myosin VI; calmodulin-b 63.9 6.3 0.00022 48.1 5.6 42 23-64 116-165 (784)
427 3lv8_A DTMP kinase, thymidylat 63.8 4.1 0.00014 42.2 3.4 22 41-62 26-47 (236)
428 1c9k_A COBU, adenosylcobinamid 63.6 4.9 0.00017 39.7 3.8 30 45-76 2-31 (180)
429 3gd7_A Fusion complex of cysti 63.4 3.9 0.00013 45.7 3.4 24 39-62 44-67 (390)
430 1v5w_A DMC1, meiotic recombina 63.1 4.7 0.00016 44.1 4.0 25 41-65 121-145 (343)
431 2ce2_X GTPase HRAS; signaling 62.8 4.1 0.00014 38.1 3.1 21 44-64 5-25 (166)
432 2yv5_A YJEQ protein; hydrolase 62.8 4.2 0.00014 43.7 3.4 25 39-63 162-186 (302)
433 2zr9_A Protein RECA, recombina 62.8 4.3 0.00015 44.6 3.6 25 41-65 60-84 (349)
434 2r62_A Cell division protease 62.8 3.6 0.00012 43.0 2.9 22 42-63 44-65 (268)
435 1tf7_A KAIC; homohexamer, hexa 62.8 4.1 0.00014 47.5 3.6 36 39-74 36-75 (525)
436 1sq5_A Pantothenate kinase; P- 62.8 3.6 0.00012 44.3 3.0 22 41-62 79-100 (308)
437 1pzn_A RAD51, DNA repair and r 62.7 3.7 0.00013 45.1 3.1 26 41-66 130-155 (349)
438 1oxx_K GLCV, glucose, ABC tran 62.7 2.4 8.2E-05 46.8 1.5 23 40-62 29-51 (353)
439 3qks_A DNA double-strand break 62.5 4.3 0.00015 40.8 3.3 20 43-62 24-43 (203)
440 3lda_A DNA repair protein RAD5 62.3 4.4 0.00015 45.5 3.6 25 41-65 177-201 (400)
441 1z2a_A RAS-related protein RAB 62.1 4.4 0.00015 38.3 3.1 21 44-64 7-27 (168)
442 4a82_A Cystic fibrosis transme 61.7 3.4 0.00012 48.8 2.7 21 40-60 365-385 (578)
443 3v9p_A DTMP kinase, thymidylat 61.5 3.9 0.00013 42.1 2.7 23 40-62 23-45 (227)
444 2ged_A SR-beta, signal recogni 61.0 4.7 0.00016 39.4 3.2 22 44-65 50-71 (193)
445 3hr8_A Protein RECA; alpha and 60.8 4.3 0.00015 44.8 3.2 25 41-65 60-84 (356)
446 3hjn_A DTMP kinase, thymidylat 60.7 7.6 0.00026 38.8 4.7 32 45-76 3-37 (197)
447 1ky3_A GTP-binding protein YPT 60.6 4.8 0.00017 38.5 3.2 22 44-65 10-31 (182)
448 2ius_A DNA translocase FTSK; n 60.3 4.2 0.00014 47.1 3.1 23 41-63 166-188 (512)
449 3qkt_A DNA double-strand break 60.3 3.4 0.00012 45.1 2.2 21 42-62 23-43 (339)
450 1kao_A RAP2A; GTP-binding prot 60.2 5 0.00017 37.6 3.2 21 44-64 5-25 (167)
451 1ek0_A Protein (GTP-binding pr 60.2 4.9 0.00017 37.9 3.1 22 44-65 5-26 (170)
452 3qf4_B Uncharacterized ABC tra 60.1 2.5 8.4E-05 50.3 1.1 24 39-62 378-401 (598)
453 1z0j_A RAB-22, RAS-related pro 60.0 5.1 0.00017 37.9 3.2 22 44-65 8-29 (170)
454 2f9l_A RAB11B, member RAS onco 59.9 4.9 0.00017 39.7 3.1 21 44-64 7-27 (199)
455 3b5x_A Lipid A export ATP-bind 59.9 3.6 0.00012 48.6 2.5 25 39-63 366-390 (582)
456 1q57_A DNA primase/helicase; d 59.8 7.6 0.00026 44.9 5.2 29 39-67 239-267 (503)
457 1u8z_A RAS-related protein RAL 59.8 5.1 0.00017 37.7 3.1 21 44-64 6-26 (168)
458 2i1q_A DNA repair and recombin 59.7 4.6 0.00016 43.6 3.2 25 41-65 97-121 (322)
459 3b60_A Lipid A export ATP-bind 59.7 3.9 0.00013 48.3 2.8 23 40-62 367-389 (582)
460 1p5z_B DCK, deoxycytidine kina 59.6 3.7 0.00013 43.0 2.2 21 41-61 23-43 (263)
461 1g16_A RAS-related protein SEC 59.6 5.1 0.00017 37.9 3.1 22 44-65 5-26 (170)
462 1oix_A RAS-related protein RAB 59.6 5 0.00017 39.4 3.2 21 44-64 31-51 (191)
463 1svm_A Large T antigen; AAA+ f 59.3 5.2 0.00018 44.5 3.5 23 41-63 168-190 (377)
464 3pxg_A Negative regulator of g 59.2 4.5 0.00015 46.4 3.1 26 34-59 191-218 (468)
465 2f7s_A C25KG, RAS-related prot 59.1 4.2 0.00014 40.7 2.5 21 44-64 27-47 (217)
466 1u0l_A Probable GTPase ENGC; p 59.1 6 0.0002 42.4 3.8 24 39-62 166-189 (301)
467 1ltq_A Polynucleotide kinase; 59.0 4.7 0.00016 42.9 3.0 21 43-63 3-23 (301)
468 2r6a_A DNAB helicase, replicat 58.9 5.6 0.00019 45.4 3.8 27 39-65 200-226 (454)
469 3pqc_A Probable GTP-binding pr 58.8 4.9 0.00017 39.1 2.9 23 43-65 24-46 (195)
470 2wsm_A Hydrogenase expression/ 58.8 5.6 0.00019 39.9 3.4 24 42-65 30-53 (221)
471 3qf4_A ABC transporter, ATP-bi 58.8 4.1 0.00014 48.2 2.7 22 40-61 367-388 (587)
472 2rcn_A Probable GTPase ENGC; Y 58.7 7.6 0.00026 42.8 4.6 25 39-63 212-236 (358)
473 2erx_A GTP-binding protein DI- 58.5 5.6 0.00019 37.6 3.2 21 44-64 5-25 (172)
474 1svi_A GTP-binding protein YSX 58.4 5 0.00017 39.2 2.9 22 43-64 24-45 (195)
475 1e69_A Chromosome segregation 58.4 3.6 0.00012 44.6 2.0 21 43-63 25-45 (322)
476 2wji_A Ferrous iron transport 58.2 5.6 0.00019 37.9 3.1 20 44-63 5-24 (165)
477 1c1y_A RAS-related protein RAP 58.1 5.6 0.00019 37.4 3.1 21 44-64 5-25 (167)
478 1wms_A RAB-9, RAB9, RAS-relate 58.1 5.7 0.00019 37.9 3.2 22 44-65 9-30 (177)
479 1z08_A RAS-related protein RAB 57.7 5.9 0.0002 37.5 3.2 22 44-65 8-29 (170)
480 2ocp_A DGK, deoxyguanosine kin 57.7 4.9 0.00017 41.3 2.8 21 42-62 2-22 (241)
481 2lkc_A Translation initiation 57.5 6.5 0.00022 37.6 3.5 23 42-64 8-30 (178)
482 1lw7_A Transcriptional regulat 57.5 4.3 0.00015 44.8 2.4 22 42-63 170-191 (365)
483 1u94_A RECA protein, recombina 57.4 6.2 0.00021 43.5 3.6 25 41-65 62-86 (356)
484 4hlc_A DTMP kinase, thymidylat 57.3 8.6 0.00029 38.7 4.5 20 43-62 3-22 (205)
485 1nrj_B SR-beta, signal recogni 57.1 5.7 0.0002 39.7 3.1 23 43-65 13-35 (218)
486 2grj_A Dephospho-COA kinase; T 57.0 5.6 0.00019 39.7 3.0 20 43-62 13-32 (192)
487 2npi_A Protein CLP1; CLP1-PCF1 56.8 5.7 0.00019 45.5 3.3 24 39-62 135-158 (460)
488 2wjg_A FEOB, ferrous iron tran 56.8 6 0.0002 38.3 3.1 21 44-64 9-29 (188)
489 1r2q_A RAS-related protein RAB 56.6 6.2 0.00021 37.2 3.1 21 44-64 8-28 (170)
490 1lkx_A Myosin IE heavy chain; 56.6 8.8 0.0003 46.1 5.0 44 23-66 70-121 (697)
491 3r20_A Cytidylate kinase; stru 56.3 7.5 0.00026 40.1 3.8 23 41-63 8-30 (233)
492 2y8e_A RAB-protein 6, GH09086P 56.2 6.2 0.00021 37.6 3.1 21 44-64 16-36 (179)
493 2fn4_A P23, RAS-related protei 56.1 6.4 0.00022 37.6 3.2 22 44-65 11-32 (181)
494 2c9o_A RUVB-like 1; hexameric 56.0 9.6 0.00033 43.4 5.1 25 35-59 52-80 (456)
495 3sfz_A APAF-1, apoptotic pepti 55.9 46 0.0016 42.4 12.1 34 31-64 132-169 (1249)
496 3q85_A GTP-binding protein REM 55.8 6.5 0.00022 37.2 3.1 20 44-63 4-23 (169)
497 1tue_A Replication protein E1; 55.8 5.6 0.00019 40.3 2.7 17 43-59 59-75 (212)
498 2hf9_A Probable hydrogenase ni 55.7 6.7 0.00023 39.5 3.4 24 43-66 39-62 (226)
499 2yl4_A ATP-binding cassette SU 55.6 4.3 0.00015 48.1 2.1 23 40-62 368-390 (595)
500 2nzj_A GTP-binding protein REM 55.6 6.6 0.00023 37.3 3.2 20 44-63 6-25 (175)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8e-84 Score=795.33 Aligned_cols=599 Identities=28% Similarity=0.403 Sum_probs=507.3
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
+..||++..|..+..++..+++++|+|||||||||++|+++++... ..|++++|++.++.+++++++.+++..+|
T Consensus 90 r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~ 169 (773)
T 2xau_A 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG 169 (773)
T ss_dssp HTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT
T ss_pred hhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchh
Confidence 4579999999999999999999999999999999999999887532 35999999999999999999999999999
Q ss_pred CeeEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 98 ~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
..+||.+++++....+++|+|+|+|+|++.+..+. .+.++++|||||+|+|+++.|+++.+++.+...+++.++|+|||
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SA 248 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSA 248 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99999999888888899999999999999887654 36699999999999999999999999999998889999999999
Q ss_pred cCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
|++.+.+.+||+. .+++.+++ +.++++++|+.. +. .+.
T Consensus 249 T~~~~~l~~~~~~------~~vi~v~g----r~~pv~~~~~~~-----------------------~~---------~~~ 286 (773)
T 2xau_A 249 TLDAEKFQRYFND------APLLAVPG----RTYPVELYYTPE-----------------------FQ---------RDY 286 (773)
T ss_dssp CSCCHHHHHHTTS------CCEEECCC----CCCCEEEECCSS-----------------------CC---------SCH
T ss_pred cccHHHHHHHhcC------CCcccccC----cccceEEEEecC-----------------------Cc---------hhH
Confidence 9999999999964 33455554 356777666431 00 011
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcC---------CCCCcEEEEecCCCCHHHHHHHHhccc---
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKICK--- 325 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~---------~~~~~~v~~lhs~l~~~er~~i~~~f~--- 325 (957)
.+.....+..++.... ++++||||+++++++.+++.|.. ...++.+.++||+|+.++|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 287 LDSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp HHHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 2222344455555443 57999999999999999998863 235788999999999999999999998
Q ss_pred --CCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhh
Q 002165 326 --SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (957)
Q Consensus 326 --~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~ 402 (957)
.|. +||||||++|+|||||+|++|||+|+++.+.||+..+++.+.+.|+|+++|.||+|||||.++|.||+||++++
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~ 444 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 444 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHH
Confidence 776 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h-hhccCCCCCchhcCCHHHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHH
Q 002165 403 F-GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYG 481 (957)
Q Consensus 403 ~-~~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG 481 (957)
+ ..+.++..|||+|.+|.+++|+++.++ +++... |+|++||+.+++..|++.|.++||||++ | .+|++|
T Consensus 445 ~~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~~~--f~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT~lG 514 (773)
T 2xau_A 445 FQKELIEQSYPEILRSNLSSTVLELKKLG---IDDLVH--FDFMDPPAPETMMRALEELNYLACLDDE---G--NLTPLG 514 (773)
T ss_dssp HHHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCGGG--CCCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBCHHH
T ss_pred hcccccccCCCccccCcHHHHHHHHHHcC---CCChhh--ccccCCCcHHHHHHHHHHHHHcCCcccC---C--CcChhh
Confidence 8 679999999999999999999997654 444433 4899999999999999999999999873 5 599999
Q ss_pred HHHHhCCCChHHHHHHHHhcccCcHHHHHHHHHHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHH
Q 002165 482 RLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGN 561 (957)
Q Consensus 482 ~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~iaa~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~ 561 (957)
+.|+.|||||++|+||+.+..++|++++++|||+|++++ +|++|.+++++++.++..|.+++|| |++.
T Consensus 515 ~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~D-----------~~~~ 582 (773)
T 2xau_A 515 RLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDGD-----------HITL 582 (773)
T ss_dssp HHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTBH-----------HHHH
T ss_pred hhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCC-cccCChHHHHHHHHHHHhccCCCCc-----------HHHH
Confidence 999999999999999999999999999999999999764 8999999988888889999887776 8888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhchhhhccccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCC
Q 002165 562 LCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSN 641 (957)
Q Consensus 562 l~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~ 641 (957)
+|+|+.|.....+ ......||++||||+++|++|.++|.||.++|.++++...+...
T Consensus 583 l~~~~~~~~~~~~-----------------------~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~ 639 (773)
T 2xau_A 583 LNVYHAFKSDEAY-----------------------EYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDY 639 (773)
T ss_dssp HHHHHHHTSHHHH-----------------------HHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCT
T ss_pred HHHHHHHHHhccc-----------------------cchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 8999999753210 01126799999999999999999999999999998876544211
Q ss_pred CCC------------CC-------------CCCcccccc------ccccCCCCCCCCCCccCCCCCCCCcccccccc---
Q 002165 642 GLP------------TY-------------YDPYEFEHT------CLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA--- 687 (957)
Q Consensus 642 ~~~------------~~-------------~~~~~~~h~------~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~--- 687 (957)
..+ +| |......+. +.+...|+||+|+|++.|+ +.|+|.|++
T Consensus 640 ~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~----~~~~~~~~~i~~ 715 (773)
T 2xau_A 640 ESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTS----KNYIRTVTSVRP 715 (773)
T ss_dssp TSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESS----SEEEEEEEECCH
T ss_pred CchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccc----hhheeecccCCH
Confidence 000 11 211011122 2333469999999999998 999999998
Q ss_pred -------CCCCCCCcccCchHHHHHHHHHHHHHhh
Q 002165 688 -------VPFVAPNQFQSNNVAEKLASIIKEIRVQ 715 (957)
Q Consensus 688 -------~~~~~~~~f~~~e~k~~L~~iike~r~~ 715 (957)
|+||+..+|+.+++++.++++.+++.+.
T Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (773)
T 2xau_A 716 EWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRL 750 (773)
T ss_dssp HHHHHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHheeeccCCchhHHHHHHHHHHHhhhh
Confidence 8999999999999999999998887654
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-50 Score=500.48 Aligned_cols=463 Identities=15% Similarity=0.086 Sum_probs=318.5
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHH--hhcCCccCCee
Q 002165 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVA--KGRNCELGGEV 100 (957)
Q Consensus 27 Pi~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva--~e~~~~lg~~V 100 (957)
.++++|.++++. +.++++++|+||||||||+++++++++. ...++++++|++.+|.++++++. .++|..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 579999999999 7889999999999999999999998753 33689999999999999999983 23455555556
Q ss_pred EEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 101 gy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
|+..+.++.. .+++|+|+|||+|.+.+..+...+.++++|||||||+.. +.++. ..++.++.+.+++|+|+||||++
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~~-~~l~~i~~~~~~~~ii~lSATl~ 186 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPERG-PVVESVTIRAKRRNLLALSATIS 186 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTTH-HHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Ccccc-hHHHHHHHhcccCcEEEEcCCCC
Confidence 6554444433 379999999999999988776556799999999999643 32332 33333433334899999999984
Q ss_pred -hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHH
Q 002165 181 -ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (957)
Q Consensus 181 -~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (957)
.+.+.+|++. +++..+. +.+++...+.... .........|..... ..........+
T Consensus 187 n~~~~~~~l~~-------~~~~~~~----r~~~l~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~~~ 243 (715)
T 2va8_A 187 NYKQIAKWLGA-------EPVATNW----RPVPLIEGVIYPE---------RKKKEYNVIFKDNTT---KKVHGDDAIIA 243 (715)
T ss_dssp THHHHHHHHTC-------EEEECCC----CSSCEEEEEEEEC---------SSTTEEEEEETTSCE---EEEESSSHHHH
T ss_pred CHHHHHHHhCC-------CccCCCC----CCCCceEEEEecC---------CcccceeeecCcchh---hhcccchHHHH
Confidence 8999999963 2222222 1222222111000 000000000110000 00000122222
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCC----------------------------------cEE
Q 002165 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF----------------------------------FKV 305 (957)
Q Consensus 260 li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~----------------------------------~~v 305 (957)
.+..+.. .++++|||++++++++.++..|...... ..+
T Consensus 244 ----~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 244 ----YTLDSLS----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ----HHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ----HHHHHHh----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 2222222 2479999999999999999988643211 348
Q ss_pred EEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcC
Q 002165 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (957)
Q Consensus 306 ~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (957)
.++||+|+.++|..+++.|+.|. +|||||+++|+|||+|++++||++ ..+||+..+.. ..|+|.+++.||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSG 388 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhh
Confidence 99999999999999999999887 999999999999999999999985 34577544332 57899999999999
Q ss_pred CCCCCC---CCeEEEeechhh-hhhcc---CCCCCchhcCCHHH------HHHHHhhhhcc-cCCChhHhhh-cccC-CC
Q 002165 385 RTGRTC---DGQVYRLVTKSF-FGTLE---DHECPAILRLSLRL------QVLLICCAESK-AISDPKVLLQ-KALD-PP 448 (957)
Q Consensus 385 RAGR~~---~G~~~~L~s~~~-~~~l~---~~~~PEI~r~~L~~------~iL~l~~~~~~-~l~~~~~~l~-~~l~-pP 448 (957)
||||.+ +|.||+++++.+ +..+. ....||+++++|.. .+|.+...+.. ...+...++. .|+. +|
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred hcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhc
Confidence 999996 899999998765 33221 24679999988764 45555443311 1112222221 3333 45
Q ss_pred CHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhccc---CcHHHHHHHHHHhccCCCcccC
Q 002165 449 YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI---GMLREGILLGILMDTQPLPILH 525 (957)
Q Consensus 449 ~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~---~c~~e~l~iaa~ls~~~~~~~~ 525 (957)
+...+..|++.|.++|+|+.++ +.+.+|++|+.|+.+|++|+++++++.+... .|..+++.|.|+.+..+.++++
T Consensus 469 ~~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r 546 (715)
T 2va8_A 469 VDVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVG 546 (715)
T ss_dssp HHHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCC
T ss_pred chHHHHHHHHHHHHCcCEeecC--CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccC
Confidence 5667999999999999998732 4457999999999999999999999999887 7999999988887765556677
Q ss_pred CCcchHH
Q 002165 526 PFGDDAL 532 (957)
Q Consensus 526 P~~~~~~ 532 (957)
|.+.+..
T Consensus 547 ~~e~~~l 553 (715)
T 2va8_A 547 RNEEEEL 553 (715)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6554443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.2e-49 Score=482.88 Aligned_cols=444 Identities=16% Similarity=0.145 Sum_probs=323.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHh--hcCCccCCeeEE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~--~~~Iivt~Prrlaa~~va~rva~--e~~~~lg~~Vgy 102 (957)
.++++|.++++.+.++++++|+||||||||+++++++++.. ..++++++|++.+|.++++++.. .+|..++..+|+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGD 104 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56889999999999999999999999999999999887542 35899999999999999999832 234455555555
Q ss_pred eeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccc-----ccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-----RSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 103 ~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE-----R~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
..+.++. ..+++|+|+|||+|.+.+..+...+.++++|||||||+ |....+.++..+ ...++++|+|+|||
T Consensus 105 ~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l---~~~~~~~~ii~lSA 180 (702)
T 2p6r_A 105 YESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKM---RRMNKALRVIGLSA 180 (702)
T ss_dssp CBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHH---HHHCTTCEEEEEEC
T ss_pred CCcchhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHH---HhcCcCceEEEECC
Confidence 5444433 34899999999999999887655567999999999996 444444444433 34467899999999
Q ss_pred cCC-hHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 178 TAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 178 Tld-~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
|++ .+.+.+|++. +++..+.. .+++...+... .. ..+...... ....+.
T Consensus 181 Tl~n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~~------------~~---~~~~~~~~~--~~~~~~-- 230 (702)
T 2p6r_A 181 TAPNVTEIAEWLDA-------DYYVSDWR----PVPLVEGVLCE------------GT---LELFDGAFS--TSRRVK-- 230 (702)
T ss_dssp CCTTHHHHHHHTTC-------EEEECCCC----SSCEEEEEECS------------SE---EEEEETTEE--EEEECC--
T ss_pred CcCCHHHHHHHhCC-------CcccCCCC----CccceEEEeeC------------Ce---eeccCcchh--hhhhhh--
Confidence 985 8999999862 23333322 22332221100 00 000000000 000010
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC----------------------------CcEEEEe
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------FFKVHIL 308 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~----------------------------~~~v~~l 308 (957)
..+.+ ..... .++++||||+++++++.++..|..... +..+.++
T Consensus 231 ~~~~~----~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 231 FEELV----EECVA----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp HHHHH----HHHHH----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred HHHHH----HHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 22222 22222 147999999999999999888753100 1347889
Q ss_pred cCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCC
Q 002165 309 HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387 (957)
Q Consensus 309 hs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAG 387 (957)
||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||++ ..+|| +. ..|+|.+++.||+||||
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBS
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcC
Confidence 99999999999999999888 999999999999999999999985 44577 11 57899999999999999
Q ss_pred CCC---CCeEEEeechhhhhhccC---CCCCchhcCCHHH------HHHHHhhhhcccCCChh---Hhhh-cc----cCC
Q 002165 388 RTC---DGQVYRLVTKSFFGTLED---HECPAILRLSLRL------QVLLICCAESKAISDPK---VLLQ-KA----LDP 447 (957)
Q Consensus 388 R~~---~G~~~~L~s~~~~~~l~~---~~~PEI~r~~L~~------~iL~l~~~~~~~l~~~~---~~l~-~~----l~p 447 (957)
|.+ +|.||+++++.+++.+.+ ...||+++++|.. .+|.+...+ .+.... .++. .| .++
T Consensus 372 R~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g--~~~~~~~~~~~l~~t~~~~~~~~ 449 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDG--YAKTLEELEDFFADTFFFKQNEI 449 (702)
T ss_dssp CTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHT--SCSSHHHHHHHHHTSTTHHHHCC
T ss_pred CCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcC--CCCCHHHHHHHHHhhhHHHhhhH
Confidence 986 899999999877654322 5679999988764 444443322 121222 2211 22 237
Q ss_pred CCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhccc--CcHHHHHHHHHHhccCCCcccC
Q 002165 448 PYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI--GMLREGILLGILMDTQPLPILH 525 (957)
Q Consensus 448 P~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~--~c~~e~l~iaa~ls~~~~~~~~ 525 (957)
|..+.+..|++.|.++|+|+.+ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|.++.+..+..+++
T Consensus 450 ~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r 526 (702)
T 2p6r_A 450 SLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVR 526 (702)
T ss_dssp CCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCC
T ss_pred HHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCC
Confidence 8899999999999999999873 4567999999999999999999999999888 8999999998888766666778
Q ss_pred CCc
Q 002165 526 PFG 528 (957)
Q Consensus 526 P~~ 528 (957)
|.+
T Consensus 527 ~~e 529 (702)
T 2p6r_A 527 KTD 529 (702)
T ss_dssp TTT
T ss_pred Cch
Confidence 776
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=9.2e-46 Score=457.43 Aligned_cols=446 Identities=14% Similarity=0.119 Sum_probs=308.6
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 27 Pi~~~Q~~il~~-l~~~~~vII~a~TGSGKTt~lp~~lle~~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.++++|.++++. +.++++++|+||||||||+++++++++.. ..++++++|++.+|.+++++++. +. ..|..|+.
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~-l~-~~g~~v~~ 100 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD-WE-KIGLRVAM 100 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG-GG-GGTCCEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH-HH-hcCCEEEE
Confidence 689999999998 88999999999999999999888877432 35899999999999999999952 21 22444444
Q ss_pred eee---cccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc-----cccccccHHHHHHHHHHhcCCCceEEE
Q 002165 103 HIG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 103 ~v~---~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH-----ER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.++ .+.....+++|+|+|||+|.+.+..+...+.++++||||||| +|....+.++..+ +.++|+|+
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l------~~~~~ii~ 174 (720)
T 2zj8_A 101 ATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHM------LGKAQIIG 174 (720)
T ss_dssp ECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHH------BTTBEEEE
T ss_pred ecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHh------hcCCeEEE
Confidence 433 222223478999999999999988766556799999999999 3333333332222 23799999
Q ss_pred ecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 175 MSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 175 mSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
||||+ +.+.+.+|++. +.+..+. +.+++...+... .. ..+..... ..
T Consensus 175 lSATl~n~~~~~~~l~~-------~~~~~~~----rp~~l~~~~~~~------------~~---~~~~~~~~------~~ 222 (720)
T 2zj8_A 175 LSATIGNPEELAEWLNA-------ELIVSDW----RPVKLRRGVFYQ------------GF---VTWEDGSI------DR 222 (720)
T ss_dssp EECCCSCHHHHHHHTTE-------EEEECCC----CSSEEEEEEEET------------TE---EEETTSCE------EE
T ss_pred EcCCcCCHHHHHHHhCC-------cccCCCC----CCCcceEEEEeC------------Ce---eeccccch------hh
Confidence 99998 78999999963 2222222 122222211000 00 00000000 00
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC-------------------------------C
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------F 302 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-------------------------------~ 302 (957)
.....+ ++.++... ++++||||+++++++.++..|..... .
T Consensus 223 ~~~~~~----~~~~~~~~----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 223 FSSWEE----LVYDAIRK----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp CSSTTH----HHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred hhHHHH----HHHHHHhC----CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 011112 22222221 47999999999999999888753210 1
Q ss_pred cEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHH
Q 002165 303 FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (957)
Q Consensus 303 ~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~Q 381 (957)
..+.++||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||+.+ .+|| ..+ ..|+|.+++.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Q 364 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQ 364 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHH
Confidence 24899999999999999999999887 9999999999999999999999854 3366 221 36889999999
Q ss_pred hcCCCCCCC---CCeEEEeechhhhh----hccCCCCCchhcC-----CHHHHHHHHhhhhcc-cCCChhHhh-hccc--
Q 002165 382 RRGRTGRTC---DGQVYRLVTKSFFG----TLEDHECPAILRL-----SLRLQVLLICCAESK-AISDPKVLL-QKAL-- 445 (957)
Q Consensus 382 R~GRAGR~~---~G~~~~L~s~~~~~----~l~~~~~PEI~r~-----~L~~~iL~l~~~~~~-~l~~~~~~l-~~~l-- 445 (957)
|+|||||.+ +|.||.++++.+++ .+.....+++... .|...++.+...+.. +..+...++ +.|+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999986 79999999976532 3333333333222 244444444332210 111122221 1222
Q ss_pred ----CCCCHHHHHHHHHHHHHcCccc-cCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhccc----CcHHHHHHHHHHh
Q 002165 446 ----DPPYPEVVGDALDLLDHKRALQ-KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI----GMLREGILLGILM 516 (957)
Q Consensus 446 ----~pP~~~~i~~al~~L~~lgal~-~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~----~c~~e~l~iaa~l 516 (957)
++|..+.+..|++.|.++|+|+ .+ .+.+.+|++|+.|+.+|++|..+++++.+... +|..+++.|+|++
T Consensus 445 ~~~~~~~~~~~~~~~l~~L~~~~~i~~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 522 (720)
T 2zj8_A 445 QRKDTYSLEEKIRNILYFLLENEFIEISL--EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLT 522 (720)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHTTSEEECT--TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeECC--CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccC
Confidence 2333478999999999999998 53 24567999999999999999999999998877 8999999999998
Q ss_pred ccCCCcccCCCcchHH
Q 002165 517 DTQPLPILHPFGDDAL 532 (957)
Q Consensus 517 s~~~~~~~~P~~~~~~ 532 (957)
+..+..+++|.+.+..
T Consensus 523 ~e~~~i~~r~~e~~~l 538 (720)
T 2zj8_A 523 PDITPFNYSKREFERL 538 (720)
T ss_dssp TTCCCCCCCHHHHHHH
T ss_pred ccccccccCHHHHHHH
Confidence 8666677777654443
No 5
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=378.54 Aligned_cols=351 Identities=15% Similarity=0.179 Sum_probs=243.0
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
...++++++|.++++.+.++++++|+||||||||+++..++++. ...+++++.|++.++.|.++++...++ .|
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~V 254 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DV 254 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----Cc
Confidence 44578999999999999999999999999999998877777654 345899999999999999999998765 46
Q ss_pred EEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC-
Q 002165 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (957)
Q Consensus 101 gy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl- 179 (957)
|+. ..+.....+++|+|||||+|++++..+...+.++++||||||| +..+.++...+...+...+++.++|+||||+
T Consensus 255 gll-tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 255 GLM-TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp EEE-CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCS
T ss_pred cEE-eCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 764 3444456789999999999999998776556699999999999 7777777666666666667889999999997
Q ss_pred ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHH-------------------HHHHHhccCCCCcccccc--c
Q 002165 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLE-------------------QVTELLGVDHGMTSELSS--L 238 (957)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~-------------------~~~~~l~~~~~~~~~~~~--~ 238 (957)
+...+..|+..... .++.++..+..+. +...++.. .....+.. +...... .
T Consensus 333 n~~e~a~~l~~~~~-~~~~vi~~~~rp~----pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~---l~~~~~~~~~ 404 (1108)
T 3l9o_A 333 NAMEFAEWICKIHS-QPCHIVYTNFRPT----PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS---ISNQIGDDPN 404 (1108)
T ss_dssp SCHHHHHHHHHHTC-SCEEEEEECCCSS----CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT---C---------
T ss_pred CHHHHHHHHHhhcC-CCeEEEecCCCcc----cceEEEeecCCcceeeeeccccchhhhhHHHHHHH---HHhhhccccc
Confidence 66788899876432 2344444333221 11111100 00000000 0000000 0
Q ss_pred cc-cCCCC-CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC---------------
Q 002165 239 RY-CSGPS-PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--------------- 301 (957)
Q Consensus 239 ~~-~~~~~-~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~--------------- 301 (957)
.. ..... ...............+..++..+.... .+++|||++++++++.++..|.....
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~---~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~ 481 (1108)
T 3l9o_A 405 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNN 481 (1108)
T ss_dssp --------------------CHHHHHHHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGG
T ss_pred ccccccccccccccccccccchhHHHHHHHHHHhcC---CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 00 00000 000000000000222334444444332 46999999999999999999864110
Q ss_pred ----------------------CcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceee
Q 002165 302 ----------------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQV 358 (957)
Q Consensus 302 ----------------------~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~ 358 (957)
...|..+||+|++.+|..+++.|+.|. +|||||+++++|||+|++++||+
T Consensus 482 ~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~------- 554 (1108)
T 3l9o_A 482 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT------- 554 (1108)
T ss_dssp SCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES-------
T ss_pred HHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEe-------
Confidence 012899999999999999999999888 99999999999999999999998
Q ss_pred eecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechh
Q 002165 359 FWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS 401 (957)
Q Consensus 359 ~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~ 401 (957)
|+.+.+.. ...|+|.++|.||+|||||.+ .|.||.++++.
T Consensus 555 -~~~~~d~~--~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 555 -SVRKWDGQ--QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp -CSEEESSS--CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred -cCcccCcc--ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 44333322 346899999999999999996 89999999864
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=343.89 Aligned_cols=316 Identities=18% Similarity=0.238 Sum_probs=219.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
.+++++|.++++.+.+++++++.||||||||+++..++++.. ..+++++.|++.++.++++.+..... ..+..+
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~ 139 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-YMGASC 139 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-GSCCCE
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc-ccCceE
Confidence 467899999999999999999999999999999888887652 34789999999999999888876432 344445
Q ss_pred EEeeecccc-------cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEE
Q 002165 101 GYHIGHSKH-------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (957)
Q Consensus 101 gy~v~~~~~-------~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklI 173 (957)
+..++.... ....++|+|+||++|++.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 140 HACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD-EMLSRGFKDQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp EECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH-HHHHTTTHHHHHHHHTTSCTTCEEE
T ss_pred EEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH-HhhccCcHHHHHHHHHhCCCCCeEE
Confidence 544433221 23678999999999999998877666789999999999 5566666666666666667889999
Q ss_pred EecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
+||||++.+.....-..... +..+ ....... ....+...| .....
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~-------------------------------~~~~~ 263 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRD--PIRI-LVKKEEL-TLEGIRQFY-------------------------------INVER 263 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSS--CEEE-CCCCCCC-CTTSCCEEE-------------------------------EECSS
T ss_pred EEEEecCHHHHHHHHHHcCC--CEEE-EecCCcc-CCCCceEEE-------------------------------EEeCh
Confidence 99999976544433222111 1111 1110000 000000000 00000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
..... ..+..+..... .+++|||++++++++.+++.|.. .++.+..+||+++.++|..+++.|+.+. +|||
T Consensus 264 ~~~~~----~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 335 (414)
T 3eiq_A 264 EEWKL----DTLCDLYETLT--ITQAVIFINTRRKVDWLTEKMHA--RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335 (414)
T ss_dssp STTHH----HHHHHHHHSSC--CSSCEEECSCHHHHHHHHHHHHT--TTCCCEEC---CHHHHHHHHHHHHSCC---CEE
T ss_pred HHhHH----HHHHHHHHhCC--CCcEEEEeCCHHHHHHHHHHHHh--cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 11111 22333333333 46899999999999999999984 4578999999999999999999999988 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||+++++|||+|++++||+ ||++. |..+|.||+|||||. ++|.||.++++.+..
T Consensus 336 ~T~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 336 TTDLLARGIDVQQVSLVIN--------YDLPT----------NRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp ECSSCC--CCGGGCSCEEE--------SSCCS----------STHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred ECCccccCCCccCCCEEEE--------eCCCC----------CHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 9999999999999999999 88776 445669999999999 689999999986654
No 7
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.2e-37 Score=365.95 Aligned_cols=300 Identities=22% Similarity=0.198 Sum_probs=222.3
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
+..||++.+|+++++.+.++++++++||||||||+++++++++.+ .+++|++|+|.+|.++++++++.++..++..+|+
T Consensus 213 r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~ 291 (666)
T 3o8b_A 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGV 291 (666)
T ss_dssp HHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSS
T ss_pred hccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC-CeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECc
Confidence 456899999999999999999999999999999999999999865 3789999999999999999999888776665555
Q ss_pred eeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChH
Q 002165 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (957)
Q Consensus 103 ~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~ 182 (957)
.. ...+++|+|+|||+|+ .+..+.+.++++|||||||+++.+.+..+..+...+.......+++||||++..
T Consensus 292 ~~-----~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 292 RT-----ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp CE-----ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred Ee-----ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 42 4567899999999984 444555668999999999976665554444444444444444588899998742
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHH
Q 002165 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (957)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (957)
+. ...+ ...++...+... . .+ ......
T Consensus 364 -----i~---~~~p------------~i~~v~~~~~~~------------i-----~~--------~~~~~~-------- 390 (666)
T 3o8b_A 364 -----VT---VPHP------------NIEEVALSNTGE------------I-----PF--------YGKAIP-------- 390 (666)
T ss_dssp -----CC---CCCT------------TEEEEECBSCSS------------E-----EE--------TTEEEC--------
T ss_pred -----cc---cCCc------------ceEEEeecccch------------h-----HH--------HHhhhh--------
Confidence 11 0000 011111110000 0 00 000000
Q ss_pred HHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccccccCcc
Q 002165 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVT 342 (957)
Q Consensus 263 ~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GId 342 (957)
+ ... .++++|||++++++++.+++.|.. .++.+..+||++++++ .++++++||||||++|+|||
T Consensus 391 -----l-~~~--~~~~vLVFv~Tr~~ae~la~~L~~--~g~~v~~lHG~l~q~e------r~~~~~~VLVATdVaerGID 454 (666)
T 3o8b_A 391 -----I-EAI--RGGRHLIFCHSKKKCDELAAKLSG--LGINAVAYYRGLDVSV------IPTIGDVVVVATDALMTGYT 454 (666)
T ss_dssp -----G-GGS--SSSEEEEECSCHHHHHHHHHHHHT--TTCCEEEECTTSCGGG------SCSSSCEEEEECTTHHHHCC
T ss_pred -----h-hhc--cCCcEEEEeCCHHHHHHHHHHHHh--CCCcEEEecCCCCHHH------HHhCCCcEEEECChHHccCC
Confidence 0 001 157999999999999999999985 4688999999999764 23455699999999999999
Q ss_pred CCCeeEEEeCCcceeee----ecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhh
Q 002165 343 IPKVAYVIDSCRSLQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (957)
Q Consensus 343 Ip~V~~VId~G~~k~~~----yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~ 403 (957)
|| |++|||+|+.+..+ ||+..++.. ...|+|.++|.||+|||||.++|. |.||++.+.
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 97 99999999888765 445455544 357999999999999999988999 999997654
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-34 Score=380.14 Aligned_cols=463 Identities=15% Similarity=0.169 Sum_probs=291.8
Q ss_pred CCccccCCCC----chHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHHHHhc-------------CCCcEEEeccHHH
Q 002165 18 FTSPEFSSLP----VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAE-------------NMEPILCTQPRRF 79 (957)
Q Consensus 18 ~~~~~r~~LP----i~~~Q~~il~~l~-~~~~vII~a~TGSGKTt~lp~~lle~-------------~~~~Iivt~Prrl 79 (957)
.|+..|..+| ++++|.++++.+. .++|++|+||||||||...-..++.. ...+++++.|.+.
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred cCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHH
Confidence 4444455555 6789999999865 68899999999999996555444421 1236899999999
Q ss_pred HHHHHHHHHHhhcCCccCCeeEEeeeccc---ccCCCCcEEEEcHHHHHHHHHccCC--CcCcceEEEEccccccccccc
Q 002165 80 AVVAVAKMVAKGRNCELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVESD 154 (957)
Q Consensus 80 aa~~va~rva~e~~~~lg~~Vgy~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~l--~l~~~~~VIIDEaHER~~~~d 154 (957)
+|.++.+.+...++ .+|..|+-..+... .....++|+|+|||.+..++..... .+.++++|||||+| .++.+
T Consensus 146 La~e~~~~l~~~~~-~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH--~l~d~ 222 (1724)
T 4f92_B 146 LVQEMVGSFGKRLA-TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH--LLHDD 222 (1724)
T ss_dssp HHHHHHHHHHHHHT-TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG--GGGST
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch--hcCCc
Confidence 99999888877654 34555554433322 2234689999999998655443211 23489999999999 22222
Q ss_pred ---HHHHHHH----HHHhcCCCceEEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhc
Q 002165 155 ---LVLVCVK----QLLLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG 226 (957)
Q Consensus 155 ---~ll~~lk----~l~~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~ 226 (957)
.+..++. ......+++|+|+||||+ |.+.+++|++.. ....+..+... .+..|.+..++.
T Consensus 223 RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~---~~~~~~~~~~~--~RPvpL~~~~~~------- 290 (1724)
T 4f92_B 223 RGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVD---PAKGLFYFDNS--FRPVPLEQTYVG------- 290 (1724)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCC---HHHHEEECCGG--GCSSCEEEECCE-------
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCC---CCCCeEEECCC--CccCccEEEEec-------
Confidence 2222222 223456789999999997 899999998631 11111111110 011111111100
Q ss_pred cCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-------
Q 002165 227 VDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------- 299 (957)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~------- 299 (957)
... .......+.+.+.+........ .++++||||++++.++.+++.|...
T Consensus 291 ----------------~~~------~~~~~~~~~~~~~~~~~v~~~~-~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~ 347 (1724)
T 4f92_B 291 ----------------ITE------KKAIKRFQIMNEIVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTL 347 (1724)
T ss_dssp ----------------ECC------CCHHHHHHHHHHHHHHHHTTCC-SSCCEEEECSSTTTTHHHHHHHHHHHHHTTST
T ss_pred ----------------cCC------cchhhhhHHHHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHHHHhhccch
Confidence 000 0000111122222222222222 2568999999999988887766310
Q ss_pred ----------------------------CCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEE
Q 002165 300 ----------------------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVI 350 (957)
Q Consensus 300 ----------------------------~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VI 350 (957)
.-...|..|||||+.++|..+++.|+.|. +|||||+++++|||+|++++||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI 427 (1724)
T 4f92_B 348 GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 427 (1724)
T ss_dssp TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEE
T ss_pred hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEE
Confidence 00235889999999999999999999999 9999999999999999999999
Q ss_pred eCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechhh---hhhccCCCCC-c-hhcCCHHHH
Q 002165 351 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF---FGTLEDHECP-A-ILRLSLRLQ 422 (957)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~~---~~~l~~~~~P-E-I~r~~L~~~ 422 (957)
. | ..+||+..+. ..++|.+++.||+|||||.+ .|.++.+.++.+ |..+.....| | -+...+.+.
T Consensus 428 ~-~---~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~ 499 (1724)
T 4f92_B 428 K-G---TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM 499 (1724)
T ss_dssp E-C---CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHH
T ss_pred e-C---CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHH
Confidence 5 2 3448876542 35789999999999999984 799999987653 3333333222 1 111223333
Q ss_pred HHHHhhhhcccCCChh---Hhh-------------------------hcccCCCCHHHHHHHHHHHHHcCccccCCCCCC
Q 002165 423 VLLICCAESKAISDPK---VLL-------------------------QKALDPPYPEVVGDALDLLDHKRALQKISPRGR 474 (957)
Q Consensus 423 iL~l~~~~~~~l~~~~---~~l-------------------------~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~ 474 (957)
++....++ .+.+.. .++ .+.++....+.+..|+..|.+.|+|..+..+|.
T Consensus 500 L~aeI~~g--~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~ 577 (1724)
T 4f92_B 500 LNAEIVLG--NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGN 577 (1724)
T ss_dssp HHHHHHHT--SCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCB
T ss_pred HHHHHHHh--hcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCc
Confidence 22211111 111111 110 011111123468899999999999975434477
Q ss_pred CccCHHHHHHHhCCCChHHHHHHHHhcccCc-HHHHHHHHHHhccCCCcccCCCc
Q 002165 475 YEPTFYGRLLASFSLSFDASVLVLKFGEIGM-LREGILLGILMDTQPLPILHPFG 528 (957)
Q Consensus 475 ~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c-~~e~l~iaa~ls~~~~~~~~P~~ 528 (957)
+.+|++||+|++++++|..++.+.......+ ..+++.+.++.+.......+.-+
T Consensus 578 ~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E 632 (1724)
T 4f92_B 578 FQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEE 632 (1724)
T ss_dssp EEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGG
T ss_pred cccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHH
Confidence 8899999999999999999999988766554 44666666665544434444433
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-34 Score=336.52 Aligned_cols=309 Identities=18% Similarity=0.227 Sum_probs=219.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C------CCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N------MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~------~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.+++|.++++.+.++++++++|+||||||.++..++++. . ..+++++.|+|.+|.|+++.+..... ..+
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~-~~~ 157 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF-ESY 157 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT-TSS
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc-cCC
Confidence 679999999999999999999999999997665554432 1 23789999999999999887765432 222
Q ss_pred CeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh--cCCC
Q 002165 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKND 169 (957)
Q Consensus 98 ~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~--~~~~ 169 (957)
..++...+.. .....+++|+|+|||+|++.+....+.+.++++||||||| +.++.+|...+.+.+.. .+++
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~~~ 236 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMRPE 236 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTSCSS
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHHHHHHHHhcCCCCC
Confidence 2233222221 1234678999999999999998776667799999999999 78888777666555443 2578
Q ss_pred ceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 002165 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (957)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (957)
.++++||||++.+ +.++...... .++. +.+.... .....+...+ .
T Consensus 237 ~q~l~~SAT~~~~-~~~~~~~~l~-~~~~-i~~~~~~-~~~~~i~~~~-----------------------~-------- 281 (434)
T 2db3_A 237 HQTLMFSATFPEE-IQRMAGEFLK-NYVF-VAIGIVG-GACSDVKQTI-----------------------Y-------- 281 (434)
T ss_dssp CEEEEEESCCCHH-HHHHHHTTCS-SCEE-EEESSTT-CCCTTEEEEE-----------------------E--------
T ss_pred ceEEEEeccCCHH-HHHHHHHhcc-CCEE-EEecccc-ccccccceEE-----------------------E--------
Confidence 8999999999754 3333322111 1111 1111100 0000000000 0
Q ss_pred cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-
Q 002165 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (957)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r- 328 (957)
... ...... .++ .+..... +++||||+++++++.+++.|.. .++.+..+||++++.+|..+++.|+.++
T Consensus 282 ~~~-~~~k~~---~l~-~~l~~~~---~~~lVF~~t~~~a~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 282 EVN-KYAKRS---KLI-EILSEQA---DGTIVFVETKRGADFLASFLSE--KEFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp ECC-GGGHHH---HHH-HHHHHCC---TTEEEECSSHHHHHHHHHHHHH--TTCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred EeC-cHHHHH---HHH-HHHHhCC---CCEEEEEeCcHHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 000 001111 122 2222222 3599999999999999999984 4578999999999999999999999988
Q ss_pred eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 329 kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+|||||+++++|||+|+|++||+ ||++. |..+|.||+|||||. ..|.++.+++++
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~--------~d~p~----------~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVIN--------YDMPS----------KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEE--------SSCCS----------SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred cEEEEchhhhCCCCcccCCEEEE--------ECCCC----------CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999 88876 445669999999999 789999999853
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.9e-34 Score=327.80 Aligned_cols=320 Identities=20% Similarity=0.273 Sum_probs=226.7
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
-.++++|.++++.+.++ ++++++||||||||+++..++++. ...+++++.|++.++.++++.+.... ...+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG-KFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh-cccCe
Confidence 45789999999999988 899999999999999888877765 23479999999999999999876643 23333
Q ss_pred eeEEeeec--ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 99 EVGYHIGH--SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 99 ~Vgy~v~~--~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++...+. ......+.+|+|+||++|++.+....+.+.++++|||||||....+.++...+.+.....+++.++|+||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 34433222 2223447899999999999998877666779999999999954433556555555555556789999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++.. +..+....... +. ......... ........+ ........
T Consensus 185 AT~~~~-~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~-------------------------------~~~~~~~~ 229 (395)
T 3pey_A 185 ATFADA-VRQYAKKIVPN-AN-TLELQTNEV-NVDAIKQLY-------------------------------MDCKNEAD 229 (395)
T ss_dssp SCCCHH-HHHHHHHHSCS-CE-EECCCGGGC-SCTTEEEEE-------------------------------EECSSHHH
T ss_pred ecCCHH-HHHHHHHhCCC-Ce-EEEcccccc-ccccccEEE-------------------------------EEcCchHH
Confidence 999753 22232221110 11 111110000 000000000 00000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
.. ..+..+..... .+++|||++++++++.+++.|.. .++.+..+||+++.++|..+++.|+.+. +|||||+
T Consensus 230 ~~----~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 230 KF----DVLTELYGLMT--IGSSIIFVATKKTANVLYGKLKS--EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp HH----HHHHHHHTTTT--SSEEEEECSCHHHHHHHHHHHHH--TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred HH----HHHHHHHHhcc--CCCEEEEeCCHHHHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 11 22233333222 47999999999999999999984 3578899999999999999999999888 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
++++|||+|++++||+ ||.+.. ...+.|..++.||+|||||. ..|.|+.++++.
T Consensus 302 ~~~~Gidip~~~~Vi~--------~~~p~~----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 302 VLARGIDIPTVSMVVN--------YDLPTL----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp GGSSSCCCTTEEEEEE--------SSCCBC----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred hhhcCCCcccCCEEEE--------cCCCCC----CcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 9999999999999999 776642 22356889999999999999 569999999864
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5e-34 Score=328.19 Aligned_cols=321 Identities=17% Similarity=0.213 Sum_probs=226.0
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
-..+++|.++++.+.++ ++++++||||||||+++..++++... .+++++.|++.++.++++++........+.
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 35789999999999987 89999999999999887777765422 378999999999999988887755433345
Q ss_pred eeEEeeecccc---cCCCCcEEEEcHHHHHHHHHc-cCCCcCcceEEEEccccccccc-ccHHHHHHHHHHhcCCCceEE
Q 002165 99 EVGYHIGHSKH---LSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVV 173 (957)
Q Consensus 99 ~Vgy~v~~~~~---~~~~t~Ivv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~~~~~~lklI 173 (957)
.+++.++.... .....+|+|+||++|++.+.. +.+.+.++++|||||||. ..+ ..+...+.......+++.++|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~~i 204 (412)
T 3fht_A 126 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQML 204 (412)
T ss_dssp CEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH-HHSTTTTHHHHHHHHHTSCTTCEEE
T ss_pred eEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH-HhhcCCcHHHHHHHHhhCCCCceEE
Confidence 56666544322 234679999999999998865 444556999999999994 443 455444444444556789999
Q ss_pred EecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccC
Q 002165 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (957)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (957)
+||||++.............. ..+.+..... ....+...+ .....
T Consensus 205 ~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-------------------------------~~~~~ 249 (412)
T 3fht_A 205 LFSATFEDSVWKFAQKVVPDP---NVIKLKREEE-TLDTIKQYY-------------------------------VLCSS 249 (412)
T ss_dssp EEESCCCHHHHHHHHHHSSSC---EEECCCGGGS-SCTTEEEEE-------------------------------EECSS
T ss_pred EEEeecCHHHHHHHHHhcCCC---eEEeeccccc-cccCceEEE-------------------------------EEcCC
Confidence 999999765433222221111 1111111000 000000000 00000
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEE
Q 002165 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (957)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlV 332 (957)
.......+.+++ .... .+++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+.+. +|||
T Consensus 250 ~~~~~~~l~~~~----~~~~--~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 321 (412)
T 3fht_A 250 RDEKFQALCNLY----GAIT--IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLV 321 (412)
T ss_dssp HHHHHHHHHHHH----HHHS--SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred hHHHHHHHHHHH----hhcC--CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 111122222222 2222 469999999999999999999843 578899999999999999999999888 9999
Q ss_pred EccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 333 aTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
||+++++|||+|++++||+ ||.+..... +.|..+|.||+|||||. .+|.|+.++++.+
T Consensus 322 ~T~~~~~Gidip~~~~Vi~--------~~~p~~~~~----~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 322 TTNVCARGIDVEQVSVVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp ECGGGTSSCCCTTEEEEEE--------SSCCBCSSS----SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EcCccccCCCccCCCEEEE--------ECCCCCCCC----CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 9999999999999999999 776654321 34778899999999998 6799999998643
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-34 Score=329.14 Aligned_cols=312 Identities=16% Similarity=0.189 Sum_probs=223.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
++++|.++++.+.+++++++.+|||||||+++..+++.. ...+++++.|++.++.++++++..... ..|..++.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK-HCGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc-ccCceEEE
Confidence 789999999999999999999999999998777777654 234788889999999999888776432 33444444
Q ss_pred eeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
..+... ......+|+|+||++|++.+......+.++++||||||| +..+.++...+.+.+....+..++++||
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-HhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 433221 224678999999999999888766666799999999999 6666665544433333345678999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++..........+..+ ..+....... ...+..++ . ......
T Consensus 202 AT~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~-----------------------~---------~~~~~~ 244 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLHKP--YEINLMEELT---LKGITQYY-----------------------A---------FVEERQ 244 (400)
T ss_dssp SCCCHHHHHHHHHHCSSC--EEESCCSSCB---CTTEEEEE-----------------------E---------ECCGGG
T ss_pred ecCCHHHHHHHHHHcCCC--eEEEeccccc---cCCceeEE-----------------------E---------Eechhh
Confidence 999765433333322211 1111010000 00000000 0 000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
....+.. +..... .+++|||++++++++.+++.|... ++.+..+||+++.++|..+++.|+.+. +|||||+
T Consensus 245 k~~~l~~----~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 245 KLHCLNT----LFSKLQ--INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp HHHHHHH----HHHHSC--CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHHH----HHhhcC--CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 1122222 222222 469999999999999999999743 577999999999999999999999888 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
++++|||+|++++||+ ||++. |..++.||+|||||. ++|.|+.+|++.+..
T Consensus 317 ~~~~Gidip~~~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVIN--------FDFPK----------TAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp CSSSSCCCTTEEEEEE--------SSCCS----------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred ccccCCCccCCCEEEE--------eCCCC----------CHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 9999999999999999 77765 566779999999999 689999999987654
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=328.85 Aligned_cols=313 Identities=18% Similarity=0.211 Sum_probs=217.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C-------------------CCcEEEeccHHHHHHH
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-------------------MEPILCTQPRRFAVVA 83 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~-------------------~~~Iivt~Prrlaa~~ 83 (957)
.++++|.++++.+.++++++++||||||||+.+..++++. . ..+++++.|++.++.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 5789999999999999999999999999997665554432 1 1368999999999999
Q ss_pred HHHHHHhhcCCccCCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHH
Q 002165 84 VAKMVAKGRNCELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL 157 (957)
Q Consensus 84 va~rva~e~~~~lg~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll 157 (957)
+++++..... ..+..++...+... ....+++|+|+||++|++.+..+.+.+.++++||||||| +..+.++..
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~ 194 (417)
T 2i4i_A 117 IYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD-RMLDMGFEP 194 (417)
T ss_dssp HHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH-HHHHTTCHH
T ss_pred HHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh-HhhccCcHH
Confidence 9988876432 22333333322221 224568999999999999998776667799999999999 555555554
Q ss_pred HHHHHHHh--c--CCCceEEEecccCChHHHHHHHhh-cCCCceeEEEEecCCC-ccceeeeeeehHHHHHHHhccCCCC
Q 002165 158 VCVKQLLL--K--KNDLRVVLMSATADITKYRDYFRD-LGRGERVEVLAIPSTN-QRTIFQRRVSYLEQVTELLGVDHGM 231 (957)
Q Consensus 158 ~~lk~l~~--~--~~~lklIlmSATld~~~~~~~f~~-~~~~~~v~v~~~~~~~-~~~~~~v~v~yl~~~~~~l~~~~~~ 231 (957)
.+.+.+.. . ....++++||||++.+.. .+... +.. +..+ .+.... ..........+.
T Consensus 195 ~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~-~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~------------- 257 (417)
T 2i4i_A 195 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQ-MLARDFLDE--YIFL-AVGRVGSTSENITQKVVWV------------- 257 (417)
T ss_dssp HHHHHHTSSSCCCBTTBEEEEEESCCCHHHH-HHHHHHCSS--CEEE-EEC----CCSSEEEEEEEC-------------
T ss_pred HHHHHHHhccCCCcCCcEEEEEEEeCCHHHH-HHHHHHcCC--CEEE-EeCCCCCCccCceEEEEEe-------------
Confidence 44333321 1 126799999999965422 22211 111 1111 111000 000000000000
Q ss_pred ccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCC
Q 002165 232 TSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (957)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~ 311 (957)
......+.+.+ +..... .++++|||++++++++.+++.|.. .++.+..+||+
T Consensus 258 ---------------------~~~~~~~~l~~----~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~~h~~ 309 (417)
T 2i4i_A 258 ---------------------EESDKRSFLLD----LLNATG-KDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGD 309 (417)
T ss_dssp ---------------------CGGGHHHHHHH----HHHTCC-TTCEEEEECSSHHHHHHHHHHHHH--TTCCEEEECTT
T ss_pred ---------------------ccHhHHHHHHH----HHHhcC-CCCeEEEEECCHHHHHHHHHHHHH--CCCCeeEecCC
Confidence 00111122222 222222 256899999999999999999984 45789999999
Q ss_pred CCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-
Q 002165 312 VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT- 389 (957)
Q Consensus 312 l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~- 389 (957)
++.++|..+++.|+.+. +|||||+++++|||+|++++||+ ||++. |..+|.||+|||||.
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPS----------DIEEYVHRIGRTGRVG 371 (417)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCS----------SHHHHHHHHTTBCC--
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCC----------CHHHHHHhcCccccCC
Confidence 99999999999999888 99999999999999999999999 88775 556679999999999
Q ss_pred CCCeEEEeechhhhh
Q 002165 390 CDGQVYRLVTKSFFG 404 (957)
Q Consensus 390 ~~G~~~~L~s~~~~~ 404 (957)
.+|.|+.++++.+..
T Consensus 372 ~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 372 NLGLATSFFNERNIN 386 (417)
T ss_dssp CCEEEEEEECGGGGG
T ss_pred CCceEEEEEccccHH
Confidence 679999999987654
No 14
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-34 Score=378.84 Aligned_cols=440 Identities=14% Similarity=0.128 Sum_probs=287.0
Q ss_pred chHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~-~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++++.+. .+++++|+||||||||+....+++ +....+++++.|++.+|.+.++.+...++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 5789999999986 567899999999999976655554 33456899999999999999999988888777877876
Q ss_pred eeeccc---ccCCCCcEEEEcHHHHHHHHHccC--CCcCcceEEEEccccccccc-----ccHHHHHHHHHH-hcCCCce
Q 002165 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVE-----SDLVLVCVKQLL-LKKNDLR 171 (957)
Q Consensus 103 ~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~~~--l~l~~~~~VIIDEaHER~~~-----~d~ll~~lk~l~-~~~~~lk 171 (957)
..+... ....+++|+|||||+|...+.... -.+.++++|||||+|. ..+ .+.++..++.+. ...+++|
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~-l~d~rg~~le~il~rl~~i~~~~~~~~r 1085 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL-IGGENGPVLEVICSRMRYISSQIERPIR 1085 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG-GGSTTHHHHHHHHHHHHHHHHTTSSCCE
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh-cCCCCCccHHHHHHHHHHHHhhcCCCce
Confidence 654321 123468999999999876665321 1234899999999993 222 122222333333 2356799
Q ss_pred EEEecccC-ChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 002165 172 VVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (957)
Q Consensus 172 lIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (957)
+|+||||+ |++.+++|++.-. ..+..+... .+..+.+.+.. + +. ...
T Consensus 1086 iI~lSATl~N~~dla~WL~~~~----~~~~~~~~~--~RPvpL~~~i~-------~-------------~~---~~~--- 1133 (1724)
T 4f92_B 1086 IVALSSSLSNAKDVAHWLGCSA----TSTFNFHPN--VRPVPLELHIQ-------G-------------FN---ISH--- 1133 (1724)
T ss_dssp EEEEESCBTTHHHHHHHHTCCS----TTEEECCGG--GCSSCEEEEEE-------E-------------EC---CCS---
T ss_pred EEEEeCCCCCHHHHHHHhCCCC----CCeEEeCCC--CCCCCeEEEEE-------e-------------cc---CCC---
Confidence 99999997 8999999997421 111111111 11111111100 0 00 000
Q ss_pred ccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-------------------------C-----
Q 002165 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------S----- 300 (957)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-------------------------~----- 300 (957)
...........+...+....+ ++++||||+++..++.++..|... .
T Consensus 1134 --~~~~~~~~~~~~~~~i~~~~~--~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1134 --TQTRLLSMAKPVYHAITKHSP--KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp --HHHHHHTTHHHHHHHHHHHCS--SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred --chhhhhhhcchHHHHHHHhcC--CCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 000000011111122222222 469999999999998877665310 0
Q ss_pred --CCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHH
Q 002165 301 --SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 377 (957)
Q Consensus 301 --~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 377 (957)
....|..+||+|++++|..+++.|+.|. +|||||+++++|||+|++.+||.. ..+||.... ...+.|..
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~ 1281 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIY 1281 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHH
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHH
Confidence 0135899999999999999999999998 999999999999999999999962 233665432 23577999
Q ss_pred hHHHhcCCCCCCC---CCeEEEeechhh---hhhccCCCCCchhcCCHH----HHHHHHhhhhcccCCChh---Hhhh-c
Q 002165 378 QAEQRRGRTGRTC---DGQVYRLVTKSF---FGTLEDHECPAILRLSLR----LQVLLICCAESKAISDPK---VLLQ-K 443 (957)
Q Consensus 378 s~~QR~GRAGR~~---~G~~~~L~s~~~---~~~l~~~~~PEI~r~~L~----~~iL~l~~~~~~~l~~~~---~~l~-~ 443 (957)
++.||+|||||.+ .|.|+.++.+.. |..+.. .|+.+.+.|. ..++..... ..+.... +++. .
T Consensus 1282 ~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~--~~~pveS~L~~~l~~~l~~eI~~--~~i~~~~d~~~~l~~T 1357 (1724)
T 4f92_B 1282 DVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY--EPLPVESHLDHCMHDHFNAEIVT--KTIENKQDAVDYLTWT 1357 (1724)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT--SCBCCCCCGGGSCHHHHHHHHHT--TSCCBHHHHHHHHTTS
T ss_pred HHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC--CCCceeeecccchHHHHHHHHHh--cccCCHHHHHHHHHhh
Confidence 9999999999984 799999987643 334432 3444555543 222222111 1122111 1110 0
Q ss_pred c-------------c--------CCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcc
Q 002165 444 A-------------L--------DPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (957)
Q Consensus 444 ~-------------l--------~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~ 502 (957)
| + +..-.+.++++++.|.+.|+|.. ++++.+.+|++|++++.++|+|..++++..+..
T Consensus 1358 fl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~-~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1358 FLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISI-EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEE-ETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred HHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEE-cCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 0 1 11123557899999999999975 233667899999999999999999999988766
Q ss_pred cCcH-HHHHHHHHHhc
Q 002165 503 IGML-REGILLGILMD 517 (957)
Q Consensus 503 ~~c~-~e~l~iaa~ls 517 (957)
.++. .+++-+.+...
T Consensus 1437 ~~~~~~~~L~il~~a~ 1452 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNAA 1452 (1724)
T ss_dssp TTCCHHHHHHHHHTSG
T ss_pred ccCCHHHHHHHhcCCc
Confidence 6654 45555555443
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.6e-34 Score=329.88 Aligned_cols=314 Identities=18% Similarity=0.249 Sum_probs=226.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
++++|.++++.+.+++++++++|||||||.++..++++. ...+++++.|++.++.++++.+... +...+..++.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL-GDYMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH-hccCCeEEEE
Confidence 789999999999999999999999999998888777754 2347999999999999999887663 3334444554
Q ss_pred eeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
.++... ....+.+|+|+|||.|++.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++|+||
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD-EMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH-HHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 433321 122457999999999999998776666789999999999 5667676665555555556789999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++.+.. ++..... ..+..+. +... ......+...+ ........
T Consensus 218 AT~~~~~~-~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~-------------------------------~~~~~~~~ 262 (410)
T 2j0s_A 218 ATLPHEIL-EMTNKFM-TDPIRIL-VKRD-ELTLEGIKQFF-------------------------------VAVEREEW 262 (410)
T ss_dssp SCCCHHHH-TTGGGTC-SSCEEEC-CCGG-GCSCTTEEEEE-------------------------------EEESSTTH
T ss_pred cCCCHHHH-HHHHHHc-CCCEEEE-ecCc-cccCCCceEEE-------------------------------EEeCcHHh
Confidence 99975432 2222111 1111111 0000 00000000000 00000111
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
..+.+.+++.. .. .+++||||+++++++.+++.|.. .++.+..+||+++.++|..+++.|+.+. +|||||+
T Consensus 263 k~~~l~~~~~~----~~--~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 263 KFDTLCDLYDT----LT--ITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp HHHHHHHHHHH----HT--SSEEEEECSSHHHHHHHHHHHHH--TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred HHHHHHHHHHh----cC--CCcEEEEEcCHHHHHHHHHHHHh--CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 12222233222 12 35899999999999999999984 4578899999999999999999999888 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
++++|||+|++++||+ ||++. |..+|.||+|||||. ++|.|+.++++.+..
T Consensus 335 ~~~~Gidi~~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 335 VWARGLDVPQVSLIIN--------YDLPN----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp GGSSSCCCTTEEEEEE--------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred hhhCcCCcccCCEEEE--------ECCCC----------CHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 9999999999999999 88775 556679999999999 789999999987654
No 16
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.3e-34 Score=360.04 Aligned_cols=352 Identities=15% Similarity=0.184 Sum_probs=234.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHH--HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~--lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
++++++|.++++.+.++++++++||||||||+. ++.........+++|+.|++.++.++++++...++ |..+|..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~l 114 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGLI 114 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEEE
Confidence 568999999999999999999999999999954 44443334446789999999999999999988653 3345554
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC-ChH
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl-d~~ 182 (957)
.+ +......++|+|+|||+|++.+......+.++++||||||| +..+.++...+.+.+...+++.++|+||||+ +..
T Consensus 115 ~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 115 TG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY 192 (997)
T ss_dssp CS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH
T ss_pred eC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCChH
Confidence 33 33345678999999999999988766556799999999999 7777766665666666677889999999997 888
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCccce---------eeee---eehHHH----HHHHhccCCCCcccc-c---cc----
Q 002165 183 KYRDYFRDLGRGERVEVLAIPSTNQRTI---------FQRR---VSYLEQ----VTELLGVDHGMTSEL-S---SL---- 238 (957)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~~~~~~~~~---------~~v~---v~yl~~----~~~~l~~~~~~~~~~-~---~~---- 238 (957)
.|.+|++.... ..+.++..+..+.... +++. ..+++. ..+.+.......... . ..
T Consensus 193 ef~~~l~~~~~-~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (997)
T 4a4z_A 193 EFANWIGRTKQ-KNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTA 271 (997)
T ss_dssp HHHHHHHHHHT-CCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhcccC-CceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccc
Confidence 99999975321 1233333333221100 0000 001000 000000000000000 0 00
Q ss_pred ccc-------C-------------------CC---C----CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCC
Q 002165 239 RYC-------S-------------------GP---S----PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT 285 (957)
Q Consensus 239 ~~~-------~-------------------~~---~----~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~ 285 (957)
... . .. . ..+........ .+..++..+.... .+++|||+++
T Consensus 272 ~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~l~~~~---~~~~IVF~~s 345 (997)
T 4a4z_A 272 RGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKK---TWPEIVNYLRKRE---LLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------CCCCTT---HHHHHHHHHHHTT---CCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchh---HHHHHHHHHHhCC---CCCEEEEECC
Confidence 000 0 00 0 00000000111 1223333333332 4699999999
Q ss_pred HHHHHHHHHHhcCCCC-------------------------------------CcEEEEecCCCCHHHHHHHHhcccCCc
Q 002165 286 YYALEQQWHLMKPLSS-------------------------------------FFKVHILHSSVDTEQALMAMKICKSHR 328 (957)
Q Consensus 286 ~~~ie~l~~~L~~~~~-------------------------------------~~~v~~lhs~l~~~er~~i~~~f~~~r 328 (957)
+++++.++..|..... ...+.++||+|++.+|..+++.|+.|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 9999999999964321 115889999999999999999999888
Q ss_pred -eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeec
Q 002165 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVT 399 (957)
Q Consensus 329 -kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s 399 (957)
+|||||+++++|||+|++.+|| .+..+ ||.. ...|+|.++|.||+|||||.+ .|.||.++.
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CcEEEEchHhhCCCCCCCceEEE-ecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999955544 45544 5543 245899999999999999974 899999984
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-33 Score=319.95 Aligned_cols=310 Identities=20% Similarity=0.272 Sum_probs=224.9
Q ss_pred CchHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 27 PVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.++++|.++++.+.++ +++++.||||||||+++..++++. ...+++++.|++.++.++++++....+. .+..++
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~ 106 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIA 106 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCceEE
Confidence 5789999999999887 799999999999998887777664 2347899999999999999998876543 222333
Q ss_pred Eeeeccc-----ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 102 YHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 102 y~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
...+... ....+.+|+|+||+.|++.+..+.+.+.++++||||||| +..+.++...+.+.+....++.++++||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 107 KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD-EMLNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp EECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH-HHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred EEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch-HhhhhchHHHHHHHHHhCCCCceEEEEe
Confidence 2222211 111368999999999999988776666799999999999 4556666655555555556789999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++.+.........+. .......... .+...|.. .. ...
T Consensus 186 AT~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~-------------------------------~~-~~~ 225 (367)
T 1hv8_A 186 ATMPREILNLAKKYMGD---YSFIKAKINA-----NIEQSYVE-------------------------------VN-ENE 225 (367)
T ss_dssp SSCCHHHHHHHHHHCCS---EEEEECCSSS-----SSEEEEEE-------------------------------CC-GGG
T ss_pred eccCHHHHHHHHHHcCC---CeEEEecCCC-----CceEEEEE-------------------------------eC-hHH
Confidence 99986644332222111 1111111100 00000000 00 011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
..+.+.++ .. ..++++||||+++++++.+++.|... ++.+..+||+++.++|..+++.|+.+. +|||||+
T Consensus 226 ~~~~l~~~----l~---~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 226 RFEALCRL----LK---NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp HHHHHHHH----HC---STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred HHHHHHHH----Hh---cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 11112122 22 22568999999999999999999843 578999999999999999999999888 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~ 405 (957)
++++|+|+|++++||+ |+++. |..++.||+|||||. .+|.|+.++++.++..
T Consensus 297 ~~~~Gid~~~~~~Vi~--------~~~~~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVIN--------YHLPQ----------NPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp THHHHCCCSCCSEEEE--------SSCCS----------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred hhhcCCCcccCCEEEE--------ecCCC----------CHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999 77655 566779999999999 5899999999876643
No 18
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=347.59 Aligned_cols=375 Identities=16% Similarity=0.180 Sum_probs=244.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh--cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle--~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
..++++|.++++.+.++++++|+||||||||+.+...++. ....+++++.|++.++.+.++.+...++ .||..
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgll 159 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLM 159 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEEE
Confidence 5589999999999999999999999999999765544443 2346899999999999999999988765 35554
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC-ChH
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl-d~~ 182 (957)
.+ +.....+++|+|+|||+|.+.+..+...+.++++||||||| +..+.+....+...+...+++.++|+||||+ +..
T Consensus 160 tG-d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 160 TG-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 237 (1010)
T ss_dssp CS-SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHH
T ss_pred eC-CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHH
Confidence 33 33345678999999999999888766666799999999999 5555544444434444556789999999998 777
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHh----ccCCCCccc-------cccccccCC-----CCC
Q 002165 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELL----GVDHGMTSE-------LSSLRYCSG-----PSP 246 (957)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l----~~~~~~~~~-------~~~~~~~~~-----~~~ 246 (957)
.+..|+.... ..++.++..+..+. +...++.....+.+ ......... ......... +..
T Consensus 238 e~a~~l~~~~-~~~~~vi~~~~rp~----pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 312 (1010)
T 2xgj_A 238 EFAEWICKIH-SQPCHIVYTNFRPT----PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRG 312 (1010)
T ss_dssp HHHHHHHHHH-TSCEEEEEECCCSS----CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------------
T ss_pred HHHHHHHhhc-CCCeEEEecCCCcc----cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccc
Confidence 8899987432 12344444333221 11111110000000 000000000 000000000 000
Q ss_pred Cc--c-cccC-ChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCC--------------------
Q 002165 247 SM--A-NAEI-KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF-------------------- 302 (957)
Q Consensus 247 ~~--~-~~~~-~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~-------------------- 302 (957)
.. . .... .......+..++..+.... .+++|||++++..++.++..|......
T Consensus 313 ~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~---~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 389 (1010)
T 2xgj_A 313 KKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 389 (1010)
T ss_dssp ----------------CHHHHHHHHHHHHT---CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccccccccchHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc
Confidence 00 0 0000 0000112233444443332 358999999999999999998752110
Q ss_pred -----------------cEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCC
Q 002165 303 -----------------FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (957)
Q Consensus 303 -----------------~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (957)
..|..+||+|++.+|..+++.|+.|. +|||||+++++|||+|++++||+. ...||...
T Consensus 390 ~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~ 465 (1010)
T 2xgj_A 390 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ 465 (1010)
T ss_dssp GGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC
T ss_pred hhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC
Confidence 13889999999999999999999888 999999999999999999999973 22366543
Q ss_pred CccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechh----hhhhccCCCCCchhcCCHH---HHHHHH
Q 002165 365 KIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKS----FFGTLEDHECPAILRLSLR---LQVLLI 426 (957)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~----~~~~l~~~~~PEI~r~~L~---~~iL~l 426 (957)
..|+|.++|.||+|||||.+ .|.||.++++. .+..+. ...++.+++.+. +++|.+
T Consensus 466 ------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~-~~~~~~l~s~f~~~~~~ilnl 530 (1010)
T 2xgj_A 466 ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV-KGQADRLDSAFHLGYNMILNL 530 (1010)
T ss_dssp ------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH-SCCCCCCCCCCCCCHHHHHHH
T ss_pred ------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH-hCCCcccccccCCcHHHHHHH
Confidence 46889999999999999995 59999999864 223332 244444454443 445544
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.3e-33 Score=318.27 Aligned_cols=314 Identities=17% Similarity=0.211 Sum_probs=221.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
++++|.++++.+.+++++++.+|||+|||.++..++++. ...+++++.|++.++.++++.+........+..++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 899999999999999999999999999998777666654 234799999999999999888876543322444544
Q ss_pred eeecccc-------cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 103 HIGHSKH-------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 103 ~v~~~~~-------~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
..+.... ....++|+|+||++|++.+....+.+.++++|||||||...-..++...+.+.+....++.++|+|
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 190 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEE
Confidence 4332211 123479999999999998887766667999999999994332245555554444445568999999
Q ss_pred cccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCCh
Q 002165 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (957)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (957)
|||++..........+. .+..+. ...............+ . .. ...
T Consensus 191 SAT~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-----------------------~--------~~-~~~ 235 (391)
T 1xti_A 191 SATLSKEIRPVCRKFMQ--DPMEIF-VDDETKLTLHGLQQYY-----------------------V--------KL-KDN 235 (391)
T ss_dssp ESSCCSTHHHHHHHHCS--SCEEEE-CCCCCCCCCTTCEEEE-----------------------E--------EC-CGG
T ss_pred EeeCCHHHHHHHHHHcC--CCeEEE-ecCccccCcccceEEE-----------------------E--------Ec-Cch
Confidence 99986542222111111 112221 1111000000000000 0 00 001
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEc
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaT 334 (957)
.....+.+++ .... ++++|||++++++++.+++.|.. .++.+..+||+++.++|..+++.|+++. +|||||
T Consensus 236 ~~~~~l~~~l----~~~~--~~~~lvf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 307 (391)
T 1xti_A 236 EKNRKLFDLL----DVLE--FNQVVIFVKSVQRCIALAQLLVE--QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 307 (391)
T ss_dssp GHHHHHHHHH----HHSC--CSEEEEECSCHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES
T ss_pred hHHHHHHHHH----HhcC--CCcEEEEeCcHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC
Confidence 1112222222 2222 47999999999999999999984 3578999999999999999999999888 999999
Q ss_pred cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
+++++|+|+|++++||+ ||++. |..++.||+|||||. ++|.|+.++++.+
T Consensus 308 ~~~~~Gidi~~~~~Vi~--------~~~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 308 NLFGRGMDIERVNIAFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp CCCSSCBCCTTEEEEEE--------SSCCS----------SHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred ChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999 78775 566779999999998 6899999998653
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=337.27 Aligned_cols=319 Identities=17% Similarity=0.220 Sum_probs=119.8
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 28 i~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
.+++|.++++.+..+ ++++++||||||||.++..++++... .+++|+.|++.++.++++.+........+..+
T Consensus 115 p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 194 (479)
T 3fmp_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (479)
T ss_dssp CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceE
Confidence 456699999999986 89999999999999888888775432 27899999999999998887765443334445
Q ss_pred EEeeeccc---ccCCCCcEEEEcHHHHHHHHHc-cCCCcCcceEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEEe
Q 002165 101 GYHIGHSK---HLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 101 gy~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~~~~~~lklIlm 175 (957)
++.++... ......+|+|+||++|++.+.. +.+.+.++++||||||| +..+ ..+...+.+.+....++.++|+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH-HHHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred EEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH-HHhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 55544332 2234578999999999999865 34555699999999999 4444 45554455444445678999999
Q ss_pred cccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCCh
Q 002165 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (957)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (957)
|||++.+.....-..+. .+ ..+.+..... ....+...|+ ... ...
T Consensus 274 SAT~~~~~~~~~~~~~~--~~-~~i~~~~~~~-~~~~~~~~~~-----------------------~~~--------~~~ 318 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVP--DP-NVIKLKREEE-TLDTIKQYYV-----------------------LCS--------SRD 318 (479)
T ss_dssp ESCCCHHHHHHHHHHSS--SE-EEEEEC----------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcC--CC-eEEecccccc-CcCCceEEEE-----------------------EeC--------CHH
Confidence 99998654332222111 11 1111111100 0000000000 000 000
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEc
Q 002165 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (957)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaT 334 (957)
... ..+..+..... .+++||||++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.+. +|||||
T Consensus 319 ~~~----~~l~~~~~~~~--~~~~lvF~~s~~~~~~l~~~L~~--~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 319 EKF----QALCNLYGAIT--IAQAMIFCHTRKTASWLAAELSK--EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH----HHHHHHHhhcc--CCceEEEeCcHHHHHHHHHHHHh--CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 001 11111221111 36899999999999999999984 3578999999999999999999999988 999999
Q ss_pred cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
+++++|||+|++++||+ ||++..... +.|..+|.||+|||||. .+|.|+.++++.+
T Consensus 391 ~~~~~GlDip~v~~VI~--------~d~p~~~~~----~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 391 NVCARGIDVEQVSVVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccCCccccCCEEEE--------ecCCCCCcc----CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 99999999999999999 777753321 34567789999999998 6799999998654
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.6e-33 Score=343.85 Aligned_cols=380 Identities=14% Similarity=0.163 Sum_probs=198.1
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---CC----CcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NM----EPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---~~----~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
.-..++++|.++++.+++++++||++|||||||+++..++++. .. ++++++.|++.++.+..+.+..... ..
T Consensus 10 g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~-~~ 88 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE-RH 88 (696)
T ss_dssp C--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT-TT
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc-cC
Confidence 3456799999999999999999999999999998777776542 11 5788889988888888877766542 22
Q ss_pred CCeeEEeeecccc------cCCCCcEEEEcHHHHHHHHHccCC-CcCcceEEEEcccccccccccHHHHHHHHHHhc---
Q 002165 97 GGEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK--- 166 (957)
Q Consensus 97 g~~Vgy~v~~~~~------~~~~t~Ivv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~--- 166 (957)
|..++...+.... ...+++|+|+|||+|++.+..+.+ .+.++++|||||||+..-... ...++..++..
T Consensus 89 ~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~ 167 (696)
T 2ykg_A 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLG 167 (696)
T ss_dssp TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHT
T ss_pred CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhc
Confidence 3344443332211 124689999999999999987765 566899999999996443333 33333222221
Q ss_pred ---CCCceEEEecccCC-------hHHHHHHHhh---cCCCc-----------------eeEEEEecCCCccceeeeeee
Q 002165 167 ---KNDLRVVLMSATAD-------ITKYRDYFRD---LGRGE-----------------RVEVLAIPSTNQRTIFQRRVS 216 (957)
Q Consensus 167 ---~~~lklIlmSATld-------~~~~~~~f~~---~~~~~-----------------~v~v~~~~~~~~~~~~~v~v~ 216 (957)
.+..++|+||||+. .+.+..++.. +.... +......-.......|.....
T Consensus 168 ~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~ 247 (696)
T 2ykg_A 168 GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247 (696)
T ss_dssp TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHH
Confidence 46789999999987 3333333322 11100 000000000000001100000
Q ss_pred -hHHHHHH---HhccCCC-C---c-cccccccc----------c------------------------------------
Q 002165 217 -YLEQVTE---LLGVDHG-M---T-SELSSLRY----------C------------------------------------ 241 (957)
Q Consensus 217 -yl~~~~~---~l~~~~~-~---~-~~~~~~~~----------~------------------------------------ 241 (957)
+...+.. .+..+.. + . .......| .
T Consensus 248 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~ 327 (696)
T 2ykg_A 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 327 (696)
T ss_dssp HHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccc
Confidence 0001100 0000000 0 0 00000000 0
Q ss_pred ------------------CCCCCCcccc--------------------cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEe
Q 002165 242 ------------------SGPSPSMANA--------------------EIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (957)
Q Consensus 242 ------------------~~~~~~~~~~--------------------~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl 283 (957)
.......... .........+.+++.......+ ++++|||+
T Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~--~~~~IIF~ 405 (696)
T 2ykg_A 328 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP--ETITILFV 405 (696)
T ss_dssp HSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT--TCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC--CCcEEEEe
Confidence 0000000000 0011112222233333222122 46899999
Q ss_pred CCHHHHHHHHHHhcCCC--CCcEEEEe--------cCCCCHHHHHHHHhcccC-Cc-eEEEEccccccCccCCCeeEEEe
Q 002165 284 PTYYALEQQWHLMKPLS--SFFKVHIL--------HSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 284 ~~~~~ie~l~~~L~~~~--~~~~v~~l--------hs~l~~~er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~VId 351 (957)
+++++++.+++.|.... ..+.+..+ ||+|+.++|..+++.|+. |. +|||||+++++|||+|++++||+
T Consensus 406 ~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 406 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp SCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 99999999999997532 22566666 669999999999999987 77 99999999999999999999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh----------hccCCCCCchhcCCHHH
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG----------TLEDHECPAILRLSLRL 421 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~----------~l~~~~~PEI~r~~L~~ 421 (957)
||++.....| .||+|| ||.++|.||.|+++.+.. .+.....||+.+.+++.
T Consensus 486 --------~d~p~s~~~~----------~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 546 (696)
T 2ykg_A 486 --------YEYVGNVIKM----------IQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 546 (696)
T ss_dssp --------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred --------eCCCCCHHHH----------HHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 9999887777 999999 999999999999987652 23334445555555544
Q ss_pred HHHHH
Q 002165 422 QVLLI 426 (957)
Q Consensus 422 ~iL~l 426 (957)
....+
T Consensus 547 ~~~~i 551 (696)
T 2ykg_A 547 FREKI 551 (696)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-33 Score=337.54 Aligned_cols=325 Identities=17% Similarity=0.212 Sum_probs=215.4
Q ss_pred CchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHh----cC-----CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA----EN-----MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~lle----~~-----~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
.++++|.++++.+. ++++++++||||||||.++..++++ .. ..+++++.|++.+|.|+++.+....+..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 47899999999999 6789999999999999765544443 22 1368899999999999999887743211
Q ss_pred c---CCeeEEeeeccc-------ccCCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHH---HH
Q 002165 96 L---GGEVGYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVC---VK 161 (957)
Q Consensus 96 l---g~~Vgy~v~~~~-------~~~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~---lk 161 (957)
. +..+...++... ....+++|+|+|||+|++.+... ...+.++++||||||| +..+.++...+ +.
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDDLETISG 252 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHHHHHHHH
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH-HHhccchHHHHHHHHH
Confidence 1 111221222211 11336899999999999887643 1224589999999999 55555443332 22
Q ss_pred HHHhc----CCCceEEEecccCChHHHHHHHhhc-CCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccc
Q 002165 162 QLLLK----KNDLRVVLMSATADITKYRDYFRDL-GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (957)
Q Consensus 162 ~l~~~----~~~lklIlmSATld~~~~~~~f~~~-~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~ 236 (957)
.+... .++.|+|+||||++... ..+.... .....+.+...+.........+...+
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 312 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKV-QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV------------------- 312 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHH-HHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE-------------------
T ss_pred hhhhccccCccCceEEEEEccCCHHH-HHHHHHhcCCCceEEEeccCCCCccccccCceEE-------------------
Confidence 22222 34789999999997542 2232221 11111111111110000000000000
Q ss_pred cccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-CCCcEEEEecCCCCHH
Q 002165 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTE 315 (957)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lhs~l~~~ 315 (957)
.............+..+...+..... ++++||||+++..++.+++.|... ..++.+..+||+|++.
T Consensus 313 -----------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~ 379 (563)
T 3i5x_A 313 -----------VISEKFANSIFAAVEHIKKQIKERDS--NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 379 (563)
T ss_dssp -----------EEESSTTHHHHHHHHHHHHHHHHTTT--CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred -----------EECchhHhhHHHHHHHHHHHHhhcCC--CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHH
Confidence 00001112223333333333333232 469999999999999999999753 2368899999999999
Q ss_pred HHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCe
Q 002165 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (957)
Q Consensus 316 er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~ 393 (957)
+|..+++.|+.++ +|||||+++++|||+|+|++||+ ||++.... +|.||+|||||. .+|.
T Consensus 380 ~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~----------~y~Qr~GRagR~g~~g~ 441 (563)
T 3i5x_A 380 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELA----------NYIHRIGRTARSGKEGS 441 (563)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTT----------HHHHHHTTSSCTTCCEE
T ss_pred HHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchh----------hhhhhcCccccCCCCce
Confidence 9999999999888 99999999999999999999999 88887555 459999999999 5899
Q ss_pred EEEeechhhh
Q 002165 394 VYRLVTKSFF 403 (957)
Q Consensus 394 ~~~L~s~~~~ 403 (957)
|+.++++.+.
T Consensus 442 ~i~~~~~~e~ 451 (563)
T 3i5x_A 442 SVLFICKDEL 451 (563)
T ss_dssp EEEEEEGGGH
T ss_pred EEEEEchhHH
Confidence 9999997654
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.1e-33 Score=310.03 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=213.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~ 106 (957)
.++++|.++++.+.+++++++.+|||+|||.++..++++.+ .+++++.|++.++.++++++..... ..+..++...+.
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~ 93 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-MKSLVVTPTRELTRQVASHIRDIGR-YMDTKVAEVYGG 93 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEEEECTT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-CCEEEEeCCHHHHHHHHHHHHHHhh-hcCCcEEEEECC
Confidence 47899999999999999999999999999988888888764 4677888888899999888875432 233344433332
Q ss_pred ccc-----cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCCh
Q 002165 107 SKH-----LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (957)
Q Consensus 107 ~~~-----~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~ 181 (957)
... ...+.+|+|+||+.|.+.+....+.+.++++||+|||| +..+.++...+...+.......++++||||++.
T Consensus 94 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 94 MPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD-LMFEMGFIDDIKIILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp SCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH-HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred cchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH-HhhccccHHHHHHHHhhCCcccEEEEEeCcCCH
Confidence 111 12358999999999999988776666799999999999 454445544444444444567889999999976
Q ss_pred HHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHH
Q 002165 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI 261 (957)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 261 (957)
.....+....... ..+ ..... ...+...+ .... .. ..
T Consensus 173 ~~~~~~~~~~~~~--~~~-~~~~~----~~~~~~~~-----------------------~~~~------~~-~~------ 209 (337)
T 2z0m_A 173 EIRKVVKDFITNY--EEI-EACIG----LANVEHKF-----------------------VHVK------DD-WR------ 209 (337)
T ss_dssp HHHHHHHHHSCSC--EEE-ECSGG----GGGEEEEE-----------------------EECS------SS-SH------
T ss_pred HHHHHHHHhcCCc--eee-ecccc----cCCceEEE-----------------------EEeC------hH-HH------
Confidence 5433222221111 111 11000 00000000 0000 00 00
Q ss_pred HHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccC
Q 002165 262 HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (957)
Q Consensus 262 ~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~G 340 (957)
..+..+. .. .++++|||++++++++.+++.|. .+..+||+++.++|..+++.|+++. +|||||+++++|
T Consensus 210 -~~~~~~~-~~--~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 279 (337)
T 2z0m_A 210 -SKVQALR-EN--KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRG 279 (337)
T ss_dssp -HHHHHHH-TC--CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTT
T ss_pred -HHHHHHH-hC--CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccC
Confidence 1111121 12 25789999999999999998886 3778999999999999999999888 999999999999
Q ss_pred ccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 341 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
+|+|++++||+ ||++. |..++.||+|||||. ++|.|+.++..
T Consensus 280 id~~~~~~Vi~--------~~~~~----------s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 280 LDIPLVEKVIN--------FDAPQ----------DLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp CCCCCBSEEEE--------SSCCS----------SHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred CCccCCCEEEE--------ecCCC----------CHHHhhHhcCccccCCCCceEEEEEeC
Confidence 99999999999 77765 556679999999999 68999999883
No 24
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-34 Score=339.51 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=203.5
Q ss_pred HHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeeccc-ccC
Q 002165 36 VEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK-HLS 111 (957)
Q Consensus 36 l~~l~~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~-~~~ 111 (957)
.+++.++++++++||||||||+++..++++. ...+++|++|+|.+|.++++++. |..+++..+... ..+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCCC
Confidence 4456788999999999999998766665542 33578999999999999988764 334555433222 234
Q ss_pred CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhc
Q 002165 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDL 191 (957)
Q Consensus 112 ~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~ 191 (957)
+...+.++|.+.+.+.+.... .+.++++|||||||++....++..++++.... .++.++|+||||++.+. ..+.
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~-~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~--- 161 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPN-RVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFP--- 161 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC--CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSC---
T ss_pred CCcEEEEEchHHHHHHhhccc-cccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhc---
Confidence 567889999999998887653 45699999999999887766777777766543 46899999999986431 0000
Q ss_pred CCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhh
Q 002165 192 GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKN 271 (957)
Q Consensus 192 ~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~ 271 (957)
....++.. +.. .+ + .... ... . ..+ . .
T Consensus 162 ~~~~pi~~--~~~-----~~--------------------~------------~~~~--~~~----~----~~l---~-~ 188 (459)
T 2z83_A 162 DSNAPIHD--LQD-----EI--------------------P------------DRAW--SSG----Y----EWI---T-E 188 (459)
T ss_dssp CCSSCEEE--EEC-----CC--------------------C------------SSCC--SSC----C----HHH---H-H
T ss_pred cCCCCeEE--ecc-----cC--------------------C------------cchh--HHH----H----HHH---H-h
Confidence 00011110 000 00 0 0000 000 0 111 1 1
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEE
Q 002165 272 ESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVI 350 (957)
Q Consensus 272 ~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VI 350 (957)
. ++++||||+++++++.+++.|... ++.+..+||. +|..+++.|+++. +|||||+++++|||||+ ++||
T Consensus 189 ~---~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 189 Y---AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp C---CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEE
T ss_pred c---CCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEE
Confidence 1 469999999999999999999854 6789999985 6777889999888 99999999999999999 9999
Q ss_pred eCCcceeeeecCCCCccccce---eecCHHhHHHhcCCCCCCC--CCeEEEeechh
Q 002165 351 DSCRSLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVTKS 401 (957)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~---~~iSkas~~QR~GRAGR~~--~G~~~~L~s~~ 401 (957)
|+|+.+...|+. .+.+.+.. .|.|.++|.||+|||||.+ +|.||.++++.
T Consensus 259 ~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 259 DCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCccccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999888777653 33444444 7999999999999999994 89999999875
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.7e-33 Score=334.11 Aligned_cols=323 Identities=17% Similarity=0.215 Sum_probs=215.2
Q ss_pred chHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHh----cC-----CCcEEEeccHHHHHHHHHHHHHhhcC---
Q 002165 28 VMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA----EN-----MEPILCTQPRRFAVVAVAKMVAKGRN--- 93 (957)
Q Consensus 28 i~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~lle----~~-----~~~Iivt~Prrlaa~~va~rva~e~~--- 93 (957)
++++|.++++.+. .+++++++||||||||..+..++++ .. ..+++++.|++.++.|+++.+.....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 7899999999999 7889999999999999765555443 21 13688899999999999988877432
Q ss_pred -CccCCeeEEeeecccc-------cCCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHH---HH
Q 002165 94 -CELGGEVGYHIGHSKH-------LSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVC---VK 161 (957)
Q Consensus 94 -~~lg~~Vgy~v~~~~~-------~~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~---lk 161 (957)
..... +...++.... ...+++|+|+|||+|++.+... ...+.++++||||||| +..+..|...+ +.
T Consensus 124 ~~~~~~-~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYA-CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDDLETISG 201 (579)
T ss_dssp GGTTSC-EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHHHHHHHH
T ss_pred cccceE-EEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH-HhhcCCCHHHHHHHHH
Confidence 11111 1111121110 1236899999999999887643 2234589999999999 55555444332 22
Q ss_pred HHHhc----CCCceEEEecccCChHHHHHHHhhc-CCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccc
Q 002165 162 QLLLK----KNDLRVVLMSATADITKYRDYFRDL-GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (957)
Q Consensus 162 ~l~~~----~~~lklIlmSATld~~~~~~~f~~~-~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~ 236 (957)
.+... .++.++++||||++... ....... .....+.+.............+...+
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~------------------- 261 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKV-QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV------------------- 261 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHH-HHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE-------------------
T ss_pred HhhhhhcccccCceEEEEeccCChHH-HHHHHHHcCCCceEEEeecCccccccccccceEE-------------------
Confidence 22222 23789999999997543 2333221 11111111111110000000000000
Q ss_pred cccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCC-CCCcEEEEecCCCCHH
Q 002165 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTE 315 (957)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lhs~l~~~ 315 (957)
.............+..+...+....+ ++++||||+++..++.+++.|... ..++.+..+||+|++.
T Consensus 262 -----------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~ 328 (579)
T 3sqw_A 262 -----------VISEKFANSIFAAVEHIKKQIKERDS--NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328 (579)
T ss_dssp -----------EEESSTTHHHHHHHHHHHHHHHHTTT--CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHH
T ss_pred -----------EEecchhhhHHHHHHHHHHHHhhcCC--CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHH
Confidence 00001112223333334434433232 469999999999999999998743 2368899999999999
Q ss_pred HHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCe
Q 002165 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (957)
Q Consensus 316 er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~ 393 (957)
+|..+++.|+.+. +|||||+++++|||+|+|++||+ ||++..... |.||+|||||. .+|.
T Consensus 329 ~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~----------y~Qr~GRagR~g~~g~ 390 (579)
T 3sqw_A 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELAN----------YIHRIGRTARSGKEGS 390 (579)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTH----------HHHHHTTSSCTTCCEE
T ss_pred HHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHH----------hhhhccccccCCCCce
Confidence 9999999999888 99999999999999999999999 898875554 59999999999 5899
Q ss_pred EEEeechhhh
Q 002165 394 VYRLVTKSFF 403 (957)
Q Consensus 394 ~~~L~s~~~~ 403 (957)
|+.++++.+.
T Consensus 391 ~i~~~~~~e~ 400 (579)
T 3sqw_A 391 SVLFICKDEL 400 (579)
T ss_dssp EEEEEEGGGH
T ss_pred EEEEEcccHH
Confidence 9999998654
No 26
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.5e-33 Score=329.23 Aligned_cols=288 Identities=17% Similarity=0.203 Sum_probs=204.2
Q ss_pred HHHHHHcCC-eEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeeccc-c
Q 002165 35 IVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK-H 109 (957)
Q Consensus 35 il~~l~~~~-~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~-~ 109 (957)
+++.+.+++ +++++||||||||+++...+++. ...+++++.|++.+|.++++.+. |..++|..+... .
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 455555554 55999999999997644444322 33578888999999999988752 445666654432 3
Q ss_pred cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHh
Q 002165 110 LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 110 ~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~ 189 (957)
..+++.|.++|+|+|.+.+.... .+.++++|||||||+++...+....++... ...++.++|+||||++.+....++.
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCS-CCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred CCCCceEEEEChHHHHHHhhCcc-cccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcC
Confidence 45677899999999998887653 456999999999997644444544444332 2356899999999986532221111
Q ss_pred hcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHH
Q 002165 190 DLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIH 269 (957)
Q Consensus 190 ~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~ 269 (957)
. ..++.... .++.. .| ... . +.+ .
T Consensus 162 ~------~~~~~~~~-----~~p~~------------------------~~----------~~~----~----~~l---~ 185 (451)
T 2jlq_A 162 N------SPIEDIER-----EIPER------------------------SW----------NTG----F----DWI---T 185 (451)
T ss_dssp S------SCEEEEEC-----CCCSS------------------------CC----------SSS----C----HHH---H
T ss_pred C------CceEecCc-----cCCch------------------------hh----------HHH----H----HHH---H
Confidence 0 01111110 00000 00 000 0 111 1
Q ss_pred hhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeE
Q 002165 270 KNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAY 348 (957)
Q Consensus 270 ~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~ 348 (957)
.. .+++||||+++++++.+++.|... ++.+..+||.+. ..+++.|++++ +|||||+++|+|||||+ ++
T Consensus 186 -~~---~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 186 -DY---QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GR 254 (451)
T ss_dssp -HC---CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SE
T ss_pred -hC---CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CE
Confidence 11 468999999999999999999854 578899999753 56889999888 99999999999999999 99
Q ss_pred EEeCCcceeeeecCCCCccccce---eecCHHhHHHhcCCCCCCC--CCeEEEeec
Q 002165 349 VIDSCRSLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVT 399 (957)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~---~~iSkas~~QR~GRAGR~~--~G~~~~L~s 399 (957)
|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 255 VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 255 VIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999999999998 555666665 8999999999999999995 899988765
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.9e-34 Score=324.10 Aligned_cols=317 Identities=20% Similarity=0.253 Sum_probs=120.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.++++|.++++.+.+++++++.+|||+|||.++..++++. ...+++++.|++.++.++++.+..... ..+..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF-HMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhc-cCCeeEE
Confidence 5789999999999999999999999999998776666653 234789999999999999888766432 2333344
Q ss_pred Eeeecccc-----cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 102 YHIGHSKH-----LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 102 y~v~~~~~-----~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
...+.... ...+++|+|+||+.|++.+..+.+.+.++++||||||| +..+.++...+.+.+....++.++++||
T Consensus 122 ~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah-~~~~~~~~~~~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp EECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEEEEC
T ss_pred EEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH-HhhCCCcHHHHHHHHHhCCCCceEEEEE
Confidence 33332211 11257899999999999988776666799999999999 5555556555555555566789999999
Q ss_pred ccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChh
Q 002165 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (957)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (957)
||++............ .+..+....... ..-.+...+. ..... ..
T Consensus 201 AT~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~--------~~ 245 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMR--NPVRILVKKDEL--TLEGIKQFYV-----------------------NVEEE--------EY 245 (394)
T ss_dssp SSCCHHHHHHHHHHCC--SCEEEEECC-----------------------------------------------------
T ss_pred EecCHHHHHHHHHhcC--CCeEEEecCccc--cCCCceEEEE-----------------------EcCch--------hh
Confidence 9997643332222211 122221111100 0000000000 00000 00
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn 335 (957)
..+.+.+++ .... .+++|||++++++++.+++.|.. .++.+..+||+++.++|..+++.|+.+. +|||||+
T Consensus 246 ~~~~l~~~~----~~~~--~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 246 KYECLTDLY----DSIS--VTQAVIFCNTRRKVEELTTKLRN--DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH----hcCC--CCcEEEEECCHHHHHHHHHHHHH--cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 011111221 1111 46899999999999999999984 4578999999999999999999999888 9999999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhhhc
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~~l 406 (957)
++++|+|+|++++||+ ||++.. ..++.||+|||||. ++|.|+.++++.+...+
T Consensus 318 ~~~~Gldi~~~~~Vi~--------~~~p~s----------~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 318 LLARGIDVQQVSLVIN--------YDLPAN----------KENYIHRIGRGGRFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhhcCCCcccCCEEEE--------eCCCCC----------HHHHHHHcCcccCCCCCceEEEEEchhHHHHH
Confidence 9999999999999999 777654 45559999999999 68999999998765443
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-32 Score=330.05 Aligned_cols=312 Identities=16% Similarity=0.122 Sum_probs=213.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~ 106 (957)
..+++|.++++.+++++++++.+|||+|||..+..+++.. .+.++|+.|++.++.+..+.+... |. .+++..+.
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-~g~~lVisP~~~L~~q~~~~l~~~-gi----~~~~l~~~ 117 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-DGFTLVICPLISLMEDQLMVLKQL-GI----SATMLNAS 117 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-SSEEEEECSCHHHHHHHHHHHHHH-TC----CEEECCSS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-CCcEEEEeCHHHHHHHHHHHHHhc-CC----cEEEEeCC
Confidence 4568999999999999999999999999996444444443 347788888888888888877663 33 33332221
Q ss_pred cc------------ccCCCCcEEEEcHHHHHH------HHHccCCCcCcceEEEEccccccccc-ccHHHHH--HHHHHh
Q 002165 107 SK------------HLSERSKIVFKTAGVLLD------EMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLL 165 (957)
Q Consensus 107 ~~------------~~~~~t~Ivv~T~g~Ll~------~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~~--lk~l~~ 165 (957)
.. ......+|+|+||++|.. .+.. ...+.++++|||||||..+-. .||...+ +..+..
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~ 196 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR 196 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHH
Confidence 10 024678999999998752 2222 222348999999999953321 1232221 223444
Q ss_pred cCCCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 166 KKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 166 ~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
..++.++|+||||++..........++...+..+. .........+.+..
T Consensus 197 ~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~~------------------------------ 245 (591)
T 2v1x_A 197 QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNRPNLYYEVRQ------------------------------ 245 (591)
T ss_dssp HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCCCTTEEEEEEE------------------------------
T ss_pred hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCCCcccEEEEEe------------------------------
Confidence 56789999999999876655555444333222221 11111111111100
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~ 325 (957)
......+.+..++..+.... .++++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+
T Consensus 246 -------~~~~~~~~~~~l~~~l~~~~--~~~~~IVf~~sr~~~e~la~~L~~--~g~~~~~~h~~l~~~~R~~~~~~F~ 314 (591)
T 2v1x_A 246 -------KPSNTEDFIEDIVKLINGRY--KGQSGIIYCFSQKDSEQVTVSLQN--LGIHAGAYHANLEPEDKTTVHRKWS 314 (591)
T ss_dssp -------CCSSHHHHHHHHHHHHTTTT--TTCEEEEECSSHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHHHhc--cCCCeEEEeCcHHHHHHHHHHHHH--CCCCEEEecCCCCHHHHHHHHHHHH
Confidence 00001112223333332221 246899999999999999999984 4578999999999999999999999
Q ss_pred CCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 326 ~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
.++ +|||||+++++|||+|+|++||+ ||++. |..+|.||+|||||. .+|.|+.+|+..+.
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~----------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSK----------SMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCS----------SHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred cCCCeEEEEechhhcCCCcccccEEEE--------eCCCC----------CHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 888 99999999999999999999999 88887 455669999999999 68999999998766
Q ss_pred hh
Q 002165 404 GT 405 (957)
Q Consensus 404 ~~ 405 (957)
..
T Consensus 377 ~~ 378 (591)
T 2v1x_A 377 FR 378 (591)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.9e-32 Score=331.07 Aligned_cols=364 Identities=13% Similarity=0.118 Sum_probs=243.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeeccccc----CCCCc
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL----SERSK 115 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~----~~~t~ 115 (957)
+++++++++||||||||+.+.+.+.+.. ..++++|+|.+|.++++++... | ..++..++..... ....+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~--~gl~l~PtR~LA~Qi~~~l~~~-g----~~v~lltG~~~~iv~TpGr~~~ 225 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAK--SGVYCGPLKLLAHEIFEKSNAA-G----VPCDLVTGEERVTVQPNGKQAS 225 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSS--SEEEEESSHHHHHHHHHHHHHT-T----CCEEEECSSCEECCSTTCCCCS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CeEEEeCHHHHHHHHHHHHHhc-C----CcEEEEECCeeEEecCCCcccc
Confidence 4778999999999999998888887764 3477799999999999998663 4 4455554444332 22478
Q ss_pred EEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC-CCceEEEecccCChHHHHHHHhhcCCC
Q 002165 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRDLGRG 194 (957)
Q Consensus 116 Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~-~~lklIlmSATld~~~~~~~f~~~~~~ 194 (957)
++++|++++. ....+++||||||| +..+.++...+.+.+...+ .+++++++|||. ..+..+....+.
T Consensus 226 il~~T~e~~~--------l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~--~~i~~l~~~~~~- 293 (677)
T 3rc3_A 226 HVSCTVEMCS--------VTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAI--DLVMELMYTTGE- 293 (677)
T ss_dssp EEEEEGGGCC--------SSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH--HHHHHHHHHHTC-
T ss_pred eeEecHhHhh--------hcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchH--HHHHHHHHhcCC-
Confidence 9999986542 13488999999999 5577788877777777666 678999999994 344444443322
Q ss_pred ceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCC
Q 002165 195 ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESD 274 (957)
Q Consensus 195 ~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~ 274 (957)
.+++..... ..+... ...... .+ . ..
T Consensus 294 -~~~v~~~~r-----~~~l~~---------------------------------~~~~l~---------~l---~-~~-- 319 (677)
T 3rc3_A 294 -EVEVRDYKR-----LTPISV---------------------------------LDHALE---------SL---D-NL-- 319 (677)
T ss_dssp -CEEEEECCC-----SSCEEE---------------------------------CSSCCC---------SG---G-GC--
T ss_pred -ceEEEEeee-----cchHHH---------------------------------HHHHHH---------HH---H-hc--
Confidence 222221110 000000 000000 00 0 01
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccC--Cc-eEEEEccccccCccCCCeeEEEe
Q 002165 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 275 ~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~--~r-kVlVaTniae~GIdIp~V~~VId 351 (957)
.+.-+||++++++++.+++.|.. .++.+.++||+|++++|..+++.|+. ++ +|||||+++++|||+ +|++||+
T Consensus 320 -~~g~iIf~~s~~~ie~la~~L~~--~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 320 -RPGDCIVCFSKNDIYSVSRQIEI--RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp -CTTEEEECSSHHHHHHHHHHHHH--TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEE
T ss_pred -CCCCEEEEcCHHHHHHHHHHHHh--cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEE
Confidence 12347889999999999999985 35789999999999999999999987 66 999999999999999 9999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC----CCeEEEeechh--hhhhccCCCCCchhcCCHHHHHHH
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS--FFGTLEDHECPAILRLSLRLQVLL 425 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G~~~~L~s~~--~~~~l~~~~~PEI~r~~L~~~iL~ 425 (957)
.|..|. .||+..+. ...|+|.++|.||+|||||.+ +|.||++++++ .+..+.....|+|.+.+|....++
T Consensus 396 ~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~ 471 (677)
T 3rc3_A 396 YSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471 (677)
T ss_dssp SCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHH
T ss_pred CCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHH
Confidence 999886 56665333 257999999999999999996 58999999876 667788889999999777766666
Q ss_pred HhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCccccCCCCCC-CccCHHHHHHHhCCCChHHHHHHHH
Q 002165 426 ICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGR-YEPTFYGRLLASFSLSFDASVLVLK 499 (957)
Q Consensus 426 l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~-~~lT~lG~~~a~lpl~p~~~~~ll~ 499 (957)
++.++. ... ...+...++.+.++..++..---.+ .....++..+..+||+....-.+..
T Consensus 472 l~~~~~-----------~l~----~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~ 531 (677)
T 3rc3_A 472 IEMFAY-----------HLP----DATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 531 (677)
T ss_dssp HHHHHH-----------HST----TSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred HHHHhc-----------cCC----cchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEe
Confidence 643321 111 1224555666666666653200000 0123445555555665554444333
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-33 Score=328.87 Aligned_cols=316 Identities=20% Similarity=0.236 Sum_probs=198.9
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCC-ccCCe
Q 002165 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGE 99 (957)
Q Consensus 28 i~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~-~lg~~ 99 (957)
.+++|.++++.+.++ ++++++||||||||.++..++++.. ..+++++.|++.++.++++++....+. .+...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 678999999999987 9999999999999988777766542 237999999999999999988775432 12222
Q ss_pred eEEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 100 Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
+++..........+++|+|+||++|++.+..+.+.+.++++|||||||+...+.++...+.+.....+++.++|+||||+
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 22222222223447899999999999998877766779999999999954433455544444444456789999999998
Q ss_pred Ch--HHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 180 DI--TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 180 d~--~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
+. +.+...+.. . +. .+.+.... .... .. .............
T Consensus 302 ~~~~~~~~~~~~~--~--~~-~i~~~~~~----~~~~--------------------~~--------~~~~~~~~~~~~k 344 (508)
T 3fho_A 302 SERVEKYAERFAP--N--AN-EIRLKTEE----LSVE--------------------GI--------KQLYMDCQSEEHK 344 (508)
T ss_dssp STHHHHHHHHHST--T--CE-EECCCCCC----------------------------CC--------CCEEEEC--CHHH
T ss_pred CHHHHHHHHHhcC--C--Ce-EEEecccc----CCcc--------------------cc--------eEEEEECCchHHH
Confidence 73 333333321 1 11 11111100 0000 00 0000000011111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
... +..+..... ++++||||+++++++.++..|.. .+..+..+||+++..+|..+++.|+.+. +|||||++
T Consensus 345 ~~~----l~~ll~~~~--~~~~LVF~~s~~~a~~l~~~L~~--~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~ 416 (508)
T 3fho_A 345 YNV----LVELYGLLT--IGQSIIFCKKKDTAEEIARRMTA--DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 416 (508)
T ss_dssp HHH----HHHHHC-----CCCEEEBCSSTTTTTHHHHHHTT--TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-
T ss_pred HHH----HHHHHHhcC--CCcEEEEECCHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCCh
Confidence 222 222222222 46999999999999999999984 4577899999999999999999999888 99999999
Q ss_pred cccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeech
Q 002165 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (957)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~ 400 (957)
+++|||+|++++||+ ||.+... ..+-|..++.||+|||||. .+|.|+.+++.
T Consensus 417 l~~GiDip~v~~VI~--------~~~p~~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 417 IARGIDVSQVNLVVN--------YDMPLDQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp ----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred hhcCCCccCCCEEEE--------ECCCCcc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 999999999999998 7766321 1123567789999999999 58999999985
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.6e-32 Score=320.13 Aligned_cols=303 Identities=19% Similarity=0.212 Sum_probs=211.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHH--HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeee
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG 105 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt--~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~ 105 (957)
.+++|.++++.+.+++++++.+|||+|||. ++|..+ .. +.++++.|++.++.+..+++.. +| ..+++..+
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~--~~-g~~lvi~P~~aL~~q~~~~l~~-~g----i~~~~l~~ 97 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--LN-GLTVVVSPLISLMKDQVDQLQA-NG----VAAACLNS 97 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--SS-SEEEEECSCHHHHHHHHHHHHH-TT----CCEEEECT
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH--hC-CCEEEECChHHHHHHHHHHHHH-cC----CcEEEEeC
Confidence 478999999999999999999999999996 555443 32 4567777888887877777754 33 33333211
Q ss_pred cc----------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHH--HHHHHHHHhcCCCceE
Q 002165 106 HS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLV--LVCVKQLLLKKNDLRV 172 (957)
Q Consensus 106 ~~----------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~l--l~~lk~l~~~~~~lkl 172 (957)
.. .......+|+|+||++|+.....+.+...++++|||||||..+-. .||. ...+..+....++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 177 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCE
Confidence 11 111346899999999996432211122348999999999964321 2332 2233445556678999
Q ss_pred EEecccCChHHHHHHHhhcCCCceeEEEEecCCCccce-eeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 002165 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTI-FQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (957)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~-~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (957)
++||||++.....++...++...+..+ +........ +.+.
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~~l~~~v~------------------------------------- 218 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQ--ISSFDRPNIRYMLM------------------------------------- 218 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEE--ECCCCCTTEEEEEE-------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEE--eCCCCCCceEEEEE-------------------------------------
Confidence 999999988766666554432222211 221111100 0000
Q ss_pred cCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eE
Q 002165 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (957)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kV 330 (957)
... ...+ .++..+... + ++++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.++ +|
T Consensus 219 ~~~-~~~~---~l~~~l~~~-~--~~~~IVf~~sr~~~e~l~~~L~~--~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 289 (523)
T 1oyw_A 219 EKF-KPLD---QLMRYVQEQ-R--GKSGIIYCNSRAKVEDTAARLQS--KGISAAAYHAGLENNVRADVQEKFQRDDLQI 289 (523)
T ss_dssp ECS-SHHH---HHHHHHHHT-T--TCCEEEECSSHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred eCC-CHHH---HHHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHHHH--CCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 000 0111 222222222 2 46899999999999999999984 4578999999999999999999999988 99
Q ss_pred EEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 331 lVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||||+++++|||+|+|++||+ ||.+. |.++|.||+|||||. .+|.|+.+|++.+..
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~--------~~~p~----------s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVH--------FDIPR----------NIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEE--------SSCCS----------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEechhhCCCCccCccEEEE--------ECCCC----------CHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999999 88776 556669999999999 589999999987654
No 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=1.5e-31 Score=319.54 Aligned_cols=353 Identities=14% Similarity=0.159 Sum_probs=198.5
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C---CCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.+.++++|.++++.+.+++++++++|||||||.++..++++. . ..+++++.|++.++.++.+.+..... ..|
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE-RLG 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTT
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc-cCC
Confidence 356899999999999999999999999999997766555432 1 45788888998888888887766532 123
Q ss_pred CeeEEeeecccc------cCCCCcEEEEcHHHHHHHHHccCC-CcCcceEEEEcccccccccccHHHHHHHHHHhc----
Q 002165 98 GEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (957)
Q Consensus 98 ~~Vgy~v~~~~~------~~~~t~Ivv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~---- 166 (957)
..++...+.... ...+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+......++..++..
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECH-NTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGG-GCSTTCHHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcc-ccCCcchHHHHHHHHHHhhhcc
Confidence 334433333211 123589999999999999987665 56689999999999 444443344444333332
Q ss_pred --CCCceEEEecccCCh----------HHHHHHHhhcCCCceeEEEEecCCC---------ccceeeeeee---------
Q 002165 167 --KNDLRVVLMSATADI----------TKYRDYFRDLGRGERVEVLAIPSTN---------QRTIFQRRVS--------- 216 (957)
Q Consensus 167 --~~~lklIlmSATld~----------~~~~~~f~~~~~~~~v~v~~~~~~~---------~~~~~~v~v~--------- 216 (957)
.++.++++||||+.. +.+......++. ..+..+... ......+...
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA----SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC----SEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC----eeeeccccCHHHHHhhcCCCceEEEEecCcccChHHH
Confidence 266899999999833 223233332221 011111100 0000000000
Q ss_pred ----hHHHHHHHhccCC-------CCccccc-cc-------------cccCCCCC-------------------------
Q 002165 217 ----YLEQVTELLGVDH-------GMTSELS-SL-------------RYCSGPSP------------------------- 246 (957)
Q Consensus 217 ----yl~~~~~~l~~~~-------~~~~~~~-~~-------------~~~~~~~~------------------------- 246 (957)
.+........... ....... .. .....+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000000000 0000000 00 00000000
Q ss_pred --------------------------Cc--------------------ccccCChhHHHHHHHHHHHHHhhCCCCCCcEE
Q 002165 247 --------------------------SM--------------------ANAEIKPEVHKLIHDLVLHIHKNESDIEKSIL 280 (957)
Q Consensus 247 --------------------------~~--------------------~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iL 280 (957)
.. ............+.+++.......+ .+++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~--~~k~l 393 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP--ETKTI 393 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT--TCCEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC--CceEE
Confidence 00 0000001112222333333333333 46999
Q ss_pred EEeCCHHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHHhcccC-Cc-eEEEEccccccCccCCCeeE
Q 002165 281 VFLPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAY 348 (957)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~----------~~~~v~~lhs~l~~~er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~ 348 (957)
||+++++.++.++..|.... .+.....+||+|+.++|..+++.|+. +. +|||||+++++|||+|++++
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSE
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCE
Confidence 99999999999999997432 13345566779999999999999998 77 99999999999999999999
Q ss_pred EEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 349 VIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 349 VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
||+ ||++.+...| .||+|| ||..+|.||.|+++.+..
T Consensus 474 VI~--------~d~p~s~~~~----------~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 474 VIL--------YEYVGNVIKM----------IQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp EEE--------ESCCSSCCCE----------ECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred EEE--------eCCCCCHHHH----------HHhcCc-CcCCCceEEEEEcCCCHH
Confidence 999 9999988877 899999 999999999999986553
No 33
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=296.81 Aligned_cols=214 Identities=16% Similarity=0.229 Sum_probs=167.6
Q ss_pred CChhHhhhcc-cCCCCHHHHHHHHHHHHHcCccccCCCCCCCccCHHHHHHHhCCCChHHHHHHHHhcccCcHHHHHHHH
Q 002165 435 SDPKVLLQKA-LDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLG 513 (957)
Q Consensus 435 ~~~~~~l~~~-l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~~a~lpl~p~~~~~ll~~~~~~c~~e~l~ia 513 (957)
|++..++ ++ +|||+.+++.+|++.|..+||||++ | +||++|+.|++||+||++||||+.+..+||++|+++||
T Consensus 2 g~~~~~l-~~~ldpP~~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~ia 75 (270)
T 3i4u_A 2 GDRGPEF-ELGTRGSPMETLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV 75 (270)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCchhcc-ccCCCCcCHHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHH
Confidence 3443443 56 9999999999999999999999974 6 59999999999999999999999999999999999999
Q ss_pred HHhccCCCcccCCCcchHHHHHHhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhchhhhc
Q 002165 514 ILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVT 593 (957)
Q Consensus 514 a~ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~~~~l~~~~~~~~~~~~ 593 (957)
|+|++++ +|.+|.++++++++.+.+|.+++|| |++.+|+|+.|++
T Consensus 76 A~Ls~~~-~f~~p~~~~~~a~~~~~~f~~~~sD-----------~ltlLn~~~~~~~----------------------- 120 (270)
T 3i4u_A 76 SMLSVQN-VFYRPKDKQALADQKKAKFHQTEGD-----------HLTLLAVYNSWKN----------------------- 120 (270)
T ss_dssp HHHTSSC-CBCCCGGGHHHHHHHHHTTCBTTBH-----------HHHHHHHHHHHHH-----------------------
T ss_pred HHHCCCc-cccCCchhHHHHHHHHHHccCCCCh-----------HHHHHHHHHHHHH-----------------------
Confidence 9999876 8999999999899999999887776 8888999999975
Q ss_pred cccCchhhHHHHHhccCChhhHHhHHHHHHHHHHHHHhcCCcccccCCCCC---------------------CCCCCcc-
Q 002165 594 ASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP---------------------TYYDPYE- 651 (957)
Q Consensus 594 ~~~~~~~~~~wC~~~~L~~~~l~~~~~i~~qL~~~~~r~~~~~~~~~~~~~---------------------~~~~~~~- 651 (957)
.+..++||++||||+++|++|.++|.||.++|.+.++...+..+... .|++-..
T Consensus 121 ----~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~ 196 (270)
T 3i4u_A 121 ----NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQ 196 (270)
T ss_dssp ----TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTC
T ss_pred ----cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCC
Confidence 12346899999999999999999999999999998876443211110 1211100
Q ss_pred ---cc--ccccccCCCCCCCCCCccCCCCCCCCcccccccc----------CCCCCCCccc
Q 002165 652 ---FE--HTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----------VPFVAPNQFQ 697 (957)
Q Consensus 652 ---~~--h~~~~~~~~~~v~~~e~~~t~~~~~~~~~r~~~~----------~~~~~~~~f~ 697 (957)
+. ..++....|+||+|+|++.|+ +.|+|.|++ |+||+..++.
T Consensus 197 ~~v~iHPsS~L~~~~p~wvvy~Elv~Ts----k~y~r~vt~I~p~wL~~~ap~~~~~~~~~ 253 (270)
T 3i4u_A 197 QVVYIHPSSALFNRQPEWVVYHELVLTT----KEYMREVTTIDPRWLVEFAPAFFKVLEVD 253 (270)
T ss_dssp CEEEECTTSTTTTSCCSEEEEEEEEESS----SEEEEEEEECCHHHHHHHCTTTEECC---
T ss_pred CEEEECchhhhcCCCCCEEEEEehhhhh----HhHHHhccccCHHHHHHHhHHHhcccccc
Confidence 01 122444679999999999999 999999998 8888877664
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.98 E-value=3.1e-31 Score=317.24 Aligned_cols=353 Identities=14% Similarity=0.145 Sum_probs=172.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C---CCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.+.++++|.++++.+.+++++++++|||||||.++..++++. . ..+++++.|++.++.++.+.+..... ..|
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 83 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQG 83 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc-ccC
Confidence 467899999999999999999999999999997766555432 1 45788889998888888887766432 113
Q ss_pred CeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCC-CcCcceEEEEcccccccccccHHHHHHHHHHhc----
Q 002165 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (957)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~---- 166 (957)
..++...+... ....+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+......+++.++..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG-GCSTTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc-ccCCcchHHHHHHHHHHhhhcc
Confidence 33333222211 1123579999999999999987765 56699999999999 555555555544444433
Q ss_pred -CCCceEEEecccCCh---HHHHHH-------HhhcCCCceeEEEEecCCC---------ccceeeeeee----------
Q 002165 167 -KNDLRVVLMSATADI---TKYRDY-------FRDLGRGERVEVLAIPSTN---------QRTIFQRRVS---------- 216 (957)
Q Consensus 167 -~~~lklIlmSATld~---~~~~~~-------f~~~~~~~~v~v~~~~~~~---------~~~~~~v~v~---------- 216 (957)
.+..++|+||||+.. ..+.+| ...++. ..+..+... ......+...
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI----QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC----SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC----eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 467899999999832 222222 222110 001111000 0000000000
Q ss_pred ---hHHHHHHHhccCCCCcc--ccccccccC------------------CC-----------------------------
Q 002165 217 ---YLEQVTELLGVDHGMTS--ELSSLRYCS------------------GP----------------------------- 244 (957)
Q Consensus 217 ---yl~~~~~~l~~~~~~~~--~~~~~~~~~------------------~~----------------------------- 244 (957)
....+.........+.. ......+.. .+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000000000000 000000000 00
Q ss_pred ----------------------CCCc--------------------ccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEE
Q 002165 245 ----------------------SPSM--------------------ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVF 282 (957)
Q Consensus 245 ----------------------~~~~--------------------~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVF 282 (957)
.... ............+.+++.......+ ++++|||
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~--~~k~lVF 396 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP--QTRTLLF 396 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT--TCCEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC--CceEEEE
Confidence 0000 0000001111122223322222222 4699999
Q ss_pred eCCHHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHHhcccC-Cc-eEEEEccccccCccCCCeeEEE
Q 002165 283 LPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVI 350 (957)
Q Consensus 283 l~~~~~ie~l~~~L~~~~----------~~~~v~~lhs~l~~~er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~VI 350 (957)
++++..++.+++.|.... .+.....+||+|+.++|..+++.|+. +. +|||||+++++|||+|++++||
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI 476 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEE
Confidence 999999999999997531 13445667889999999999999998 87 9999999999999999999999
Q ss_pred eCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 351 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
+ ||++.+ ..+|.||+|| ||.++|.||.|+++...+
T Consensus 477 ~--------~d~p~s----------~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 477 L--------YEYSGN----------VTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp E--------ETCCSC----------HHHHHHC---------CCEEEEESCHHHH
T ss_pred E--------eCCCCC----------HHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9 999874 4555999999 999999999999986654
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.3e-31 Score=313.22 Aligned_cols=355 Identities=17% Similarity=0.185 Sum_probs=229.6
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
..++++++|.++++.+.++ ++++.+|||+|||+++..++++. ...+++++.|++.++.+.++.+....+..- ..+
T Consensus 6 ~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~-~~v 83 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP-EKI 83 (494)
T ss_dssp HHHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG-GGE
T ss_pred CCCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch-hhe
Confidence 3468999999999999988 99999999999998888877664 456899999999999999999988765411 123
Q ss_pred EEeeeccc-----ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 101 GYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 101 gy~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
+...+... ....+.+|+|+|+++|.+.+..+.+.+.++++||||||| +..+......+.+.+....+..++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~~~~~~~~~~~~l~l 162 (494)
T 1wp9_A 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQAKNPLVIGL 162 (494)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG-GCSTTCHHHHHHHHHHHHCSSCCEEEE
T ss_pred EEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc-ccCCCCcHHHHHHHHHhcCCCCeEEEE
Confidence 32222111 112357899999999999988776666799999999999 555444444555666556678899999
Q ss_pred cccCC--hHHHHHHHhhcCCCceeEEEEecCCC-ccceee-----eeeeh---HHHHHHH--------------hccCCC
Q 002165 176 SATAD--ITKYRDYFRDLGRGERVEVLAIPSTN-QRTIFQ-----RRVSY---LEQVTEL--------------LGVDHG 230 (957)
Q Consensus 176 SATld--~~~~~~~f~~~~~~~~v~v~~~~~~~-~~~~~~-----v~v~y---l~~~~~~--------------l~~~~~ 230 (957)
|||+. .+.+..++..++.... ......... .....+ ..... .....+. .+....
T Consensus 163 TaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 163 TASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp ESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred ecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99985 5667777766542211 110000000 000000 00000 0000000 000000
Q ss_pred C----ccccc------cccccCCCCCC-cc--------------------------------------------------
Q 002165 231 M----TSELS------SLRYCSGPSPS-MA-------------------------------------------------- 249 (957)
Q Consensus 231 ~----~~~~~------~~~~~~~~~~~-~~-------------------------------------------------- 249 (957)
. ..... ........... +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence 0 00000 00000000000 00
Q ss_pred ---------------cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecC----
Q 002165 250 ---------------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHS---- 310 (957)
Q Consensus 250 ---------------~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs---- 310 (957)
...........+.+++.......+ ++++|||+++++.++.+++.|... ++.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~--~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~ 397 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ--NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASK 397 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC--CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccc
Confidence 000011112222333333322222 569999999999999999999854 678999999
Q ss_pred ----CCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 311 ----SVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 311 ----~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
+++.++|..+++.|+.+. +|||||+++++|||+|++++||. ||++. |.+++.||+||
T Consensus 398 ~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d~~~----------~~~~~~Qr~GR 459 (494)
T 1wp9_A 398 ENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEPVP----------SAIRSIQRRGR 459 (494)
T ss_dssp -------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSCCH----------HHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eCCCC----------CHHHHHHHHhh
Confidence 999999999999999888 99999999999999999999998 88765 55667999999
Q ss_pred CCCCCCCeEEEeechhhhh
Q 002165 386 TGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 386 AGR~~~G~~~~L~s~~~~~ 404 (957)
|||.++|.+|+|+++...+
T Consensus 460 ~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 460 TGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp SCSCCCSEEEEEEETTSHH
T ss_pred ccCCCCceEEEEEecCCHH
Confidence 9999889999999976543
No 36
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.98 E-value=4.9e-32 Score=326.38 Aligned_cols=299 Identities=17% Similarity=0.184 Sum_probs=214.4
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
++..+|++.. .++.++++++++++||||||||+++...+++ ....+++|+.|+|.+|.++++.+. |.
T Consensus 169 ~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 4677888755 3888999999999999999999875444432 233478888899999999887654 34
Q ss_pred eeEEeeec-ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 99 EVGYHIGH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 99 ~Vgy~v~~-~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
.++|..+. +...+++..+.++|.+.|.+.+.... .+.++++|||||||++....+..+..+...+ .+++.|+|+|||
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~~~~~q~il~SA 316 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTA 316 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCS-SCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECS
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccc-cccCCeEEEEECCCCCCccHHHHHHHHHHHh-cccCccEEEEEC
Confidence 56776554 33456778899999999998877653 3569999999999976444444455454443 236789999999
Q ss_pred cCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhH
Q 002165 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (957)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (957)
|++.. ...++.. ....+.+...+ +.... ...
T Consensus 317 T~~~~-~~~~~~~----------------~~~~~~v~~~~--------------------------~~~~~--~~l---- 347 (618)
T 2whx_A 317 TPPGS-TDPFPQS----------------NSPIEDIEREI--------------------------PERSW--NTG---- 347 (618)
T ss_dssp SCTTC-CCSSCCC----------------SSCEEEEECCC--------------------------CSSCC--SSS----
T ss_pred CCchh-hhhhhcc----------------CCceeeecccC--------------------------CHHHH--HHH----
Confidence 98643 1111110 00111111100 00000 000
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
+..+.. . .+++||||+++++++.+++.|... ++.+..+||. +|..+++.|++++ +||||||+
T Consensus 348 -------l~~l~~-~---~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv 410 (618)
T 2whx_A 348 -------FDWITD-Y---QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDI 410 (618)
T ss_dssp -------CHHHHH-C---CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGG
T ss_pred -------HHHHHh-C---CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcH
Confidence 111111 1 468999999999999999999854 5789999984 6778999998888 99999999
Q ss_pred cccCccCCCeeEEEeCCcceeeee--cCCCCccccceeecCHHhHHHhcCCCCCCC--CCeEEEeec
Q 002165 337 AESSVTIPKVAYVIDSCRSLQVFW--DVNRKIDSAELVWVSQSQAEQRRGRTGRTC--DGQVYRLVT 399 (957)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~y--d~~~~~~~l~~~~iSkas~~QR~GRAGR~~--~G~~~~L~s 399 (957)
+++||||| |++|||+|..+.+.+ +...++......|+|.++|.||+|||||.+ +|.||.+++
T Consensus 411 ~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 411 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99999997 999999999877655 333334445566899999999999999994 899999997
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=2.1e-31 Score=307.69 Aligned_cols=298 Identities=15% Similarity=0.151 Sum_probs=200.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh--cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle--~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
..++++|.++++.+.++++++++||||||||+.+...++. ....+++++.|++.++.++++++..... .|..++..
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~ 97 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGF 97 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEE
Confidence 4578999999999999999999999999999744444333 2445788899999999999999887433 45555554
Q ss_pred eecccc---------c-CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccc---------ccccc-ccHHHHHHHHH
Q 002165 104 IGHSKH---------L-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH---------ERSVE-SDLVLVCVKQL 163 (957)
Q Consensus 104 v~~~~~---------~-~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaH---------ER~~~-~d~ll~~lk~l 163 (957)
.+.... . ...++|+|+|||+|++.+.. +.+.++++||||||| +|+++ .++...+++.+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 433221 1 23489999999999877664 344589999999999 34444 44444423333
Q ss_pred Hhc-C-----------CCceEEEecccCChHHHH-HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCC
Q 002165 164 LLK-K-----------NDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG 230 (957)
Q Consensus 164 ~~~-~-----------~~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~ 230 (957)
+.. + ++.++++||||+.+..+. .++..... +. +... ....-.+...|
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~---~~~~-~~~~~~i~~~~------------- 235 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FT---VGRL-VSVARNITHVR------------- 235 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS---CC---SSCC-CCCCCSEEEEE-------------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc---cC---cCcc-ccccccchhee-------------
Confidence 221 1 678999999994332211 12211100 00 0000 00000000000
Q ss_pred CccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEE-Eec
Q 002165 231 MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILH 309 (957)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~-~lh 309 (957)
.. .. ..+.+.+++.. . ++++||||++++.++.+++.|.. .++.+. .+|
T Consensus 236 ----------~~--------~~----~~~~l~~~l~~----~---~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~~~h 284 (414)
T 3oiy_A 236 ----------IS--------SR----SKEKLVELLEI----F---RDGILIFAQTEEEGKELYEYLKR--FKFNVGETWS 284 (414)
T ss_dssp ----------ES--------SC----CHHHHHHHHHH----H---CSSEEEEESSHHHHHHHHHHHHH--TTCCEEESSS
T ss_pred ----------ec--------cC----HHHHHHHHHHH----c---CCCEEEEECCHHHHHHHHHHHHH--cCCceehhhc
Confidence 00 00 01112222222 1 36899999999999999999984 357787 888
Q ss_pred CCCCHHHHHHHHhcccCCc-eEEEE----ccccccCccCCC-eeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhc
Q 002165 310 SSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (957)
Q Consensus 310 s~l~~~er~~i~~~f~~~r-kVlVa----Tniae~GIdIp~-V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (957)
|. +|. ++.|++|. +|||| |+++++|||+|+ |++||+ ||.+.+ .|..+|.||+
T Consensus 285 ~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~--------~~~~~y~qr~ 342 (414)
T 3oiy_A 285 EF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSG--------PDVYTYIQAS 342 (414)
T ss_dssp CH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTT--------TCHHHHHHHH
T ss_pred Cc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCC--------CCHHHHHHHh
Confidence 84 344 88999888 99999 999999999999 999999 888731 2556779999
Q ss_pred CCCCCCC-----CCeEEEeech
Q 002165 384 GRTGRTC-----DGQVYRLVTK 400 (957)
Q Consensus 384 GRAGR~~-----~G~~~~L~s~ 400 (957)
|||||.+ .|.|+.++.+
T Consensus 343 GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 343 GRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp GGGCCEETTEECCEEEEEECCC
T ss_pred CccccCCCCCCcceEEEEEEcc
Confidence 9999984 7999999954
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=330.24 Aligned_cols=354 Identities=14% Similarity=0.189 Sum_probs=199.7
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----CC----CcEEEeccHHHHHHHH-HHHHHhhcC
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM----EPILCTQPRRFAVVAV-AKMVAKGRN 93 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~~----~~Iivt~Prrlaa~~v-a~rva~e~~ 93 (957)
+..++++++|.++++.+.++++++|.+|||+|||.++..++++. .. ++++|+.|++.++.+. ++.+....+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999999999999997766665542 11 5678888888888888 888877665
Q ss_pred C--ccCCeeEEeeecc--cccCCCCcEEEEcHHHHHHHHH------ccCCCcCcceEEEEcccccccccccHHHHHHHHH
Q 002165 94 C--ELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQL 163 (957)
Q Consensus 94 ~--~lg~~Vgy~v~~~--~~~~~~t~Ivv~T~g~Ll~~l~------~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l 163 (957)
. .++...|.....+ .......+|+|+||++|.+.+. ...+.+.++++||||||| +.........+++.+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH-~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG-GCBTTBSSCSHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc-ccCccchHHHHHHHH
Confidence 3 3322222221111 1112568999999999998873 334556699999999999 544433322222222
Q ss_pred Hhc-----C---------CCceEEEecccCChH----------HHHHHHhhcCC-----------------Ccee-EEEE
Q 002165 164 LLK-----K---------NDLRVVLMSATADIT----------KYRDYFRDLGR-----------------GERV-EVLA 201 (957)
Q Consensus 164 ~~~-----~---------~~lklIlmSATld~~----------~~~~~f~~~~~-----------------~~~v-~v~~ 201 (957)
+.. . +..++|+||||+... .+......+.. ..+. .+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 221 2 678999999998641 22222222211 0000 0000
Q ss_pred ecCCCccceeeeeee-hHHHHHHHhccCC--CCccc--------------------------------------------
Q 002165 202 IPSTNQRTIFQRRVS-YLEQVTELLGVDH--GMTSE-------------------------------------------- 234 (957)
Q Consensus 202 ~~~~~~~~~~~v~v~-yl~~~~~~l~~~~--~~~~~-------------------------------------------- 234 (957)
...... ..+..... ....+...+.... .....
T Consensus 242 ~~~~~~-~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (699)
T 4gl2_A 242 ADATRE-DPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMI 320 (699)
T ss_dssp EC------CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred cccccC-ChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000000 0000000000000 00000
Q ss_pred ------------cccccccCCCCCCcccccCChh---------------------------HHHHHHHHHHHHHhhCCCC
Q 002165 235 ------------LSSLRYCSGPSPSMANAEIKPE---------------------------VHKLIHDLVLHIHKNESDI 275 (957)
Q Consensus 235 ------------~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~li~~lv~~i~~~~~~~ 275 (957)
...................... ....+.+++.......+ .
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~-~ 399 (699)
T 4gl2_A 321 DAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE-E 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS-S
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC-C
Confidence 0000000000000000000000 00001122222222211 1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCC----CCCcEEEEecCC--------CCHHHHHHHHhcccCCc-eEEEEccccccCcc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSS--------VDTEQALMAMKICKSHR-KVILATNIAESSVT 342 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~----~~~~~v~~lhs~--------l~~~er~~i~~~f~~~r-kVlVaTniae~GId 342 (957)
++++|||+++++.++.+++.|... ..++.+..+||+ |+.++|..+++.|+.|. +|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 469999999999999999999853 126889999999 99999999999999988 99999999999999
Q ss_pred CCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeec
Q 002165 343 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (957)
Q Consensus 343 Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s 399 (957)
+|++++||+ ||++.+. .+|.||+|||||.+ .++.++.
T Consensus 480 ip~v~~VI~--------~d~p~s~----------~~~~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIR--------YGLVTNE----------IAMVQARGRARADE--STYVLVA 516 (699)
T ss_dssp CCSCCCCEE--------ESCCCCH----------HHHHHHHTTSCSSS--CEEEEEE
T ss_pred cccCCEEEE--------eCCCCCH----------HHHHHHcCCCCCCC--ceEEEEE
Confidence 999999999 9988744 55599999987754 4444544
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=8.9e-30 Score=317.78 Aligned_cols=353 Identities=12% Similarity=0.125 Sum_probs=180.5
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C---CCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N---MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~---~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
...++++|.++++.+.+++++|+++|||||||.++..+++.. . ..+++|+.|++.++.+....+..... ..|
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~-~~~ 324 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQG 324 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGT
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc-cCC
Confidence 566889999999999999999999999999997766665543 1 45788889988888888877766432 113
Q ss_pred CeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCC-CcCcceEEEEcccccccccccHHHHHHHHHHhc----
Q 002165 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK---- 166 (957)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~---- 166 (957)
..++...+... ....+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+......+++.+...
T Consensus 325 ~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH-~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGG-GCSTTSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcc-ccCCCccHHHHHHHHHHHhhcc
Confidence 33333322221 1124689999999999999987665 56689999999999 555544455555444433
Q ss_pred -CCCceEEEecccCCh----------HHHHHHHhhcCCCceeEEEEecCC-----------Cccceeeee----eeh---
Q 002165 167 -KNDLRVVLMSATADI----------TKYRDYFRDLGRGERVEVLAIPST-----------NQRTIFQRR----VSY--- 217 (957)
Q Consensus 167 -~~~lklIlmSATld~----------~~~~~~f~~~~~~~~v~v~~~~~~-----------~~~~~~~v~----v~y--- 217 (957)
.+..++|+||||+.. +.+..+...++.. .+..... +......+. ..+
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~----~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc----EEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 567899999999832 2333332222110 1111000 000000000 000
Q ss_pred ----HHHHHHHhccCCC------Cccccc-cc-------------cccCCCCC---------------------------
Q 002165 218 ----LEQVTELLGVDHG------MTSELS-SL-------------RYCSGPSP--------------------------- 246 (957)
Q Consensus 218 ----l~~~~~~l~~~~~------~~~~~~-~~-------------~~~~~~~~--------------------------- 246 (957)
+..+......... ...... .. .....+..
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000000000 000000 00 00000000
Q ss_pred ------------------------Ccc--------------------cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEE
Q 002165 247 ------------------------SMA--------------------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVF 282 (957)
Q Consensus 247 ------------------------~~~--------------------~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVF 282 (957)
... ...........+.+++.......+ ++++|||
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~--~~kvLIF 637 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP--QTRTLLF 637 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCS--SCCEEEE
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCC--CCeEEEE
Confidence 000 000000011112222222222222 4799999
Q ss_pred eCCHHHHHHHHHHhcCCC----------CCcEEEEecCCCCHHHHHHHHhcccC-Cc-eEEEEccccccCccCCCeeEEE
Q 002165 283 LPTYYALEQQWHLMKPLS----------SFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVI 350 (957)
Q Consensus 283 l~~~~~ie~l~~~L~~~~----------~~~~v~~lhs~l~~~er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~VI 350 (957)
++++..++.+++.|.... .+.....+||+|+..+|..+++.|+. +. +|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 999999999999997531 23455677999999999999999998 87 9999999999999999999999
Q ss_pred eCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 351 DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 351 d~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
+ ||++.+ ..+|.||+|| ||.++|.||+|+++.+..
T Consensus 718 ~--------yd~p~s----------~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 718 L--------YEYSGN----------VTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp E--------ESCCSC----------HHHHHTC--------CCCEEEEECCHHHH
T ss_pred E--------eCCCCC----------HHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9 999874 4555999999 999999999999986543
No 40
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=5.4e-30 Score=297.27 Aligned_cols=282 Identities=17% Similarity=0.211 Sum_probs=194.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeec-ccccCCCCcE
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH-SKHLSERSKI 116 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~-~~~~~~~t~I 116 (957)
++++++++||||||||+.+...++ .....+++++.|++.+|.|+++.+. |..|++..+. .....++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCceE
Confidence 478999999999999976533333 1233478888899999999887653 3356665553 3344557788
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhcCCCce
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGER 196 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~~~~~ 196 (957)
.++|.+.+.+.+... ..+.++++|||||+|.++...+.....++.+. .+++.++|+||||+.... ..
T Consensus 74 ~~~~~~~l~~~l~~~-~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~-----~~------ 140 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQG-VRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGTT-----EA------ 140 (431)
T ss_dssp EEEEHHHHHHHHHHT-CCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTCC-----CS------
T ss_pred EEEchHHHHHHHhcC-ccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcch-----hh------
Confidence 999999998877763 34669999999999965444455555666554 356899999999986420 00
Q ss_pred eEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCC
Q 002165 197 VEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIE 276 (957)
Q Consensus 197 v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~ 276 (957)
.+... ...+.+...+ +... .... . +. +. .. +
T Consensus 141 -----~~~~~-~~i~~~~~~~--------------------------~~~~--~~~~----~----~~---l~-~~---~ 171 (431)
T 2v6i_A 141 -----FPPSN-SPIIDEETRI--------------------------PDKA--WNSG----Y----EW---IT-EF---D 171 (431)
T ss_dssp -----SCCCS-SCCEEEECCC--------------------------CSSC--CSSC----C----HH---HH-SC---S
T ss_pred -----hcCCC-CceeeccccC--------------------------CHHH--HHHH----H----HH---HH-cC---C
Confidence 00000 0001010000 0000 0000 0 11 11 11 4
Q ss_pred CcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcc
Q 002165 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (957)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~ 355 (957)
+++|||||++++++.+++.|... ++.+..+||+ +|..+++.|+.|+ +|||||+++|+|||+| +.+|||+|..
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 68999999999999999999854 6889999997 5778899999888 9999999999999999 9999999999
Q ss_pred eeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-CCeEEEeec
Q 002165 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVT 399 (957)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~~~~L~s 399 (957)
+.+.|| ..++......|.|.++|.||+||+||.+ .+.|+.+|.
T Consensus 245 ~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 245 IKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 998888 4555555567999999999999999995 333545554
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=2.8e-30 Score=300.37 Aligned_cols=286 Identities=23% Similarity=0.222 Sum_probs=191.1
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecc-cccCCC
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSER 113 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~-~~~~~~ 113 (957)
++.++++++++||||||||+++...+++ ....+++++.|++.+|.|+++.+.. ..+++..+.- ...+++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccceeccCCc
Confidence 3567899999999999999765444443 2334788888999999999887642 2345554332 233455
Q ss_pred CcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHHHHHHHhhcCC
Q 002165 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGR 193 (957)
Q Consensus 114 t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~~~~~f~~~~~ 193 (957)
.-+-+++.+.+...+... ..+.++++|||||+|+.....++.++++..+.. +++.++++||||++.... .+.. .
T Consensus 77 ~l~~~l~~~~l~~~~~~~-~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~~-~~~~---~ 150 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEP-TRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTSD-EFPH---S 150 (440)
T ss_dssp CCEEEEEHHHHHHHHTSS-SCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCC-SSCC---C
T ss_pred cceeeecccchhHhhhCc-ccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchhh-hhhh---c
Confidence 667778888887766654 345699999999999654444455566665543 467899999999864310 0000 0
Q ss_pred CceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCC
Q 002165 194 GERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES 273 (957)
Q Consensus 194 ~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~ 273 (957)
..++ ..+...+ +... . ... +..+.. .
T Consensus 151 ~~~~-------------~~~~~~~--------------------------~~~~-~-~~~-----------~~~l~~-~- 176 (440)
T 1yks_A 151 NGEI-------------EDVQTDI--------------------------PSEP-W-NTG-----------HDWILA-D- 176 (440)
T ss_dssp SSCE-------------EEEECCC--------------------------CSSC-C-SSS-----------CHHHHH-C-
T ss_pred CCCe-------------eEeeecc--------------------------ChHH-H-HHH-----------HHHHHh-c-
Confidence 0000 0010000 0000 0 000 011111 1
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeC
Q 002165 274 DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 274 ~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~ 352 (957)
++++|||||++++++.+++.|... ++.+..+|| ++|..+++.|++++ +|||||+++|+|||+| +++|||+
T Consensus 177 --~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 177 --KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp --CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEEC
T ss_pred --CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeC
Confidence 469999999999999999999854 578999999 46778899999988 9999999999999999 9999999
Q ss_pred Ccceeeeec-CCCCccccceeecCHHhHHHhcCCCCCC--CCCeEEEeec
Q 002165 353 CRSLQVFWD-VNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 399 (957)
Q Consensus 353 G~~k~~~yd-~~~~~~~l~~~~iSkas~~QR~GRAGR~--~~G~~~~L~s 399 (957)
|..+.+.|+ ...++...-..|.|.++|.||+|||||. .+|.||.+|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 998877763 3333444445689999999999999997 5899999984
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=4.2e-29 Score=315.45 Aligned_cols=357 Identities=13% Similarity=0.132 Sum_probs=181.2
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-------CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-------~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
....++++|.++++.+.+++++++++|||||||.++..++++.. ..+++|+.|++.++.+....+...... .
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~ 323 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 323 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 35678999999999999999999999999999988777776542 346888899888888887777664321 1
Q ss_pred CCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCC-CcCcceEEEEcccccccccccHHHHHHHHHHhc---
Q 002165 97 GGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLK--- 166 (957)
Q Consensus 97 g~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~--- 166 (957)
|..++...+... ....+.+|+|+||++|.+.+..+.+ .+.++++||||||| +..+.+....+++.+...
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH-~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGG-GCSTTCHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcc-ccCCCccHHHHHHHHHHHhhc
Confidence 223332222211 1123579999999999999987655 56689999999999 555554455555444433
Q ss_pred --CCCceEEEecccCCh----------HHHHHHHhhcCCCc-----------------ee-EEEEecCCCccceeeeee-
Q 002165 167 --KNDLRVVLMSATADI----------TKYRDYFRDLGRGE-----------------RV-EVLAIPSTNQRTIFQRRV- 215 (957)
Q Consensus 167 --~~~lklIlmSATld~----------~~~~~~f~~~~~~~-----------------~v-~v~~~~~~~~~~~~~v~v- 215 (957)
.+..++++||||+.. +.+......+.... +. ........... .+....
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~-~~~~~l~ 481 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN-PFAAIIS 481 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCC-HHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCc-HHHHHHH
Confidence 567899999999832 22222222211100 00 00000000000 000000
Q ss_pred ehHHHHHHHhc----------c---CCCCccc--cc-c---c-cccCCCCC-----------------------------
Q 002165 216 SYLEQVTELLG----------V---DHGMTSE--LS-S---L-RYCSGPSP----------------------------- 246 (957)
Q Consensus 216 ~yl~~~~~~l~----------~---~~~~~~~--~~-~---~-~~~~~~~~----------------------------- 246 (957)
.++..+..... . ..+.... .. . . .....+..
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00000000000 0 0000000 00 0 0 00000000
Q ss_pred ----------------------Ccc--------------------cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeC
Q 002165 247 ----------------------SMA--------------------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP 284 (957)
Q Consensus 247 ----------------------~~~--------------------~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~ 284 (957)
... ...........+.+++..... ...++++|||++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~--~~~~~rvLIF~~ 639 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR--YNPQTRTLLFAK 639 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT--SCTTCCEEEEES
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc--cCCCCeEEEEeC
Confidence 000 000000011111122211111 122579999999
Q ss_pred CHHHHHHHHHHhcCC----------CCCcEEEEecCCCCHHHHHHHHhcccC-Cc-eEEEEccccccCccCCCeeEEEeC
Q 002165 285 TYYALEQQWHLMKPL----------SSFFKVHILHSSVDTEQALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 285 ~~~~ie~l~~~L~~~----------~~~~~v~~lhs~l~~~er~~i~~~f~~-~r-kVlVaTniae~GIdIp~V~~VId~ 352 (957)
+++.++.+++.|... ..+.....+||+|+..+|..+++.|+. |. +|||||+++++|||+|++++||+
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~- 718 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL- 718 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE-
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE-
Confidence 999999999999753 113445667999999999999999998 87 99999999999999999999999
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechhhhh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~~~~ 404 (957)
||++.+...| .||+|| ||.++|.||.|+++...+
T Consensus 719 -------yD~p~s~~~~----------iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 -------YEYSGNVTKM----------IQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp -------ESCCSCSHHH----------HCC--------CCCEEEEESCHHHH
T ss_pred -------eCCCCCHHHH----------HHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 9998866555 999999 999999999999986554
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=5.3e-30 Score=310.58 Aligned_cols=290 Identities=16% Similarity=0.187 Sum_probs=202.5
Q ss_pred HHHHHHH------cCCeEEEEcCCCCcHHHHHHHHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEee
Q 002165 34 KIVEKVL------ENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 34 ~il~~l~------~~~~vII~a~TGSGKTt~lp~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v 104 (957)
++++.++ ++++++++||||||||+++...+++ ....+++++.|++.+|.|+++.+... .+++..
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~-------~i~~~~ 299 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL-------PVRYLT 299 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-------CCEECC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-------Ceeeec
Confidence 6666665 8999999999999999765444442 23357888889999999998876531 244443
Q ss_pred ec-ccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChHH
Q 002165 105 GH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITK 183 (957)
Q Consensus 105 ~~-~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~~ 183 (957)
+. ....+++..+.+++.+.+.+.+... ..+.++++|||||||+.....+..+..++.+.. +++.++|+||||++...
T Consensus 300 ~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 300 PAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS 377 (673)
T ss_dssp C---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC
T ss_pred ccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh
Confidence 32 2234556778899999998877765 346699999999999765555566666666653 36789999999986331
Q ss_pred HHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcccccCChhHHHHHHH
Q 002165 184 YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHD 263 (957)
Q Consensus 184 ~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 263 (957)
..+... ..++..+ ... + +. .....
T Consensus 378 -----~~~~~~-~~~i~~v-----------~~~-----------------------~---~~-----~~~~~-------- 401 (673)
T 2wv9_A 378 -----DPFPDT-NSPVHDV-----------SSE-----------------------I---PD-----RAWSS-------- 401 (673)
T ss_dssp -----CSSCCC-SSCEEEE-----------ECC-----------------------C---CS-----SCCSS--------
T ss_pred -----hhhccc-CCceEEE-----------eee-----------------------c---CH-----HHHHH--------
Confidence 000000 0000000 000 0 00 00000
Q ss_pred HHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCcc
Q 002165 264 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVT 342 (957)
Q Consensus 264 lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GId 342 (957)
++..+.. .++++||||+++++++.+++.|... ++.+..+||. +|..+++.|+.++ +|||||+++|+|||
T Consensus 402 ~l~~l~~----~~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GID 471 (673)
T 2wv9_A 402 GFEWITD----YAGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGAN 471 (673)
T ss_dssp CCHHHHS----CCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCC
T ss_pred HHHHHHh----CCCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhccee
Confidence 0111111 1479999999999999999999854 6889999994 7888999999988 99999999999999
Q ss_pred CCCeeEEEeCCccee--eeecCCCCccccceeecCHHhHHHhcCCCCCC--CCCeEEEeec
Q 002165 343 IPKVAYVIDSCRSLQ--VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRLVT 399 (957)
Q Consensus 343 Ip~V~~VId~G~~k~--~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~--~~G~~~~L~s 399 (957)
+| +++|||+|.... ..||...++..+-..|.|.++|.||+|||||. ++|.||.++.
T Consensus 472 ip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 472 FG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred eC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 99 999999987554 33566555555455789999999999999998 5899999974
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.1e-27 Score=306.75 Aligned_cols=299 Identities=14% Similarity=0.170 Sum_probs=209.5
Q ss_pred chHHHHHHHHHHHc----CC--eEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 28 VMSLREKIVEKVLE----NR--VTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 28 i~~~Q~~il~~l~~----~~--~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
.+++|.++++.+.+ ++ +++++|+||+|||.++...++ -....+++++.|++.+|.|.++++.+.++ ..+..
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~ 682 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR 682 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST-TTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh-cCCCe
Confidence 49999999999876 55 999999999999966543332 23345889999999999999999887654 33444
Q ss_pred eEEeeeccc----------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 100 VGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 100 Vgy~v~~~~----------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
++...++.. ......+|+|+|++.|. +.+.+.++++|||||+|.- .. .....+...+++
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~--g~----~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF--GV----RHKERIKAMRAN 751 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS--CH----HHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc--Ch----HHHHHHHHhcCC
Confidence 555433321 11346899999998663 3345669999999999942 11 122223334567
Q ss_pred ceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 002165 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (957)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (957)
.++++||||+.+..+...+.... ...+ +...+.. ..++..++..
T Consensus 752 ~~vl~lSATp~p~~l~~~~~~~~---~~~~--i~~~~~~-r~~i~~~~~~------------------------------ 795 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMSGMR---DLSI--IATPPAR-RLAVKTFVRE------------------------------ 795 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHTTTS---EEEE--CCCCCCB-CBCEEEEEEE------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHhcCC---CceE--EecCCCC-ccccEEEEec------------------------------
Confidence 89999999998777766665421 1112 1111111 1112111100
Q ss_pred cccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-
Q 002165 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (957)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r- 328 (957)
... ......++..+. .+++++|||++.++++.+++.|....++..+..+||+|+..+|..+++.|++++
T Consensus 796 ---~~~--~~i~~~il~~l~-----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~ 865 (1151)
T 2eyq_A 796 ---YDS--MVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 865 (1151)
T ss_dssp ---CCH--HHHHHHHHHHHT-----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSC
T ss_pred ---CCH--HHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 000 111112222221 147999999999999999999987666788999999999999999999999888
Q ss_pred eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 329 kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
+|||||+++++|||+|++++||. ++... + +.+++.||+||+||. ..|.||.++++.
T Consensus 866 ~VLVaT~v~e~GiDip~v~~VIi--------~~~~~----~-----~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 866 NVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CEEEESSTTGGGSCCTTEEEEEE--------TTTTS----S-----CHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEECCcceeeecccCCcEEEE--------eCCCC----C-----CHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999999996 55422 1 345679999999998 589999998754
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=4e-29 Score=306.46 Aligned_cols=300 Identities=15% Similarity=0.218 Sum_probs=202.3
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~------~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
..++++|.++++.+.++ .+++++||||||||..+..++++. ...+++++.|++.+|.|.++++...+. ..|
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS-KFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT-CSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh-hcC
Confidence 35799999999998765 589999999999998777766653 234788888999999999999887653 334
Q ss_pred CeeEEeeecccc----------cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcC
Q 002165 98 GEVGYHIGHSKH----------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (957)
Q Consensus 98 ~~Vgy~v~~~~~----------~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~ 167 (957)
..|+...+.... .....+|+|+|++.|.+ .+.+.++++|||||+|..+... ...+....
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q------r~~l~~~~ 514 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ------REALMNKG 514 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----------CCCCSSS
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH------HHHHHHhC
Confidence 455554443211 13468999999997743 3446699999999999422111 11122234
Q ss_pred CCceEEEecccCChHHHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 002165 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (957)
.+.++++||||+.++.+...+.. . ..+.+ +...+.++ .++...++.
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g--~-~~~s~--i~~~p~~r-~~i~~~~~~---------------------------- 560 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYG--D-LDVTV--IDEMPPGR-KEVQTMLVP---------------------------- 560 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTC--C-SSCEE--ECCCCSSC-CCCEECCCC----------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHhC--C-cceee--eeccCCCC-cceEEEEec----------------------------
Confidence 56899999999887776644421 1 11112 11111110 111111100
Q ss_pred cccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHH--------HHHHHHHHhcC-CCCCcEEEEecCCCCHHHHH
Q 002165 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKP-LSSFFKVHILHSSVDTEQAL 318 (957)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~--------~ie~l~~~L~~-~~~~~~v~~lhs~l~~~er~ 318 (957)
..... .++..+..... .+++++||||..+ .++.+++.|.. ...++.+..+||+|+.++|.
T Consensus 561 ---~~~~~-------~l~~~i~~~l~-~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 561 ---MDRVN-------EVYEFVRQEVM-RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp ---SSTHH-------HHHHHHHHHTT-TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSH
T ss_pred ---cchHH-------HHHHHHHHHHh-cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHH
Confidence 00001 11112221111 2468999999764 46777888875 44567899999999999999
Q ss_pred HHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEE
Q 002165 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (957)
Q Consensus 319 ~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~ 396 (957)
.+++.|++|. +|||||+++++|||+|++++||. ||++.. +.+++.||+||+||. .+|.||.
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~---------~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERF---------GLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSS---------CTTHHHHHHHTSCCSSTTCEEEC
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccCcCCCCCEEEE
Confidence 9999999988 99999999999999999999998 777641 334569999999997 6899999
Q ss_pred eec
Q 002165 397 LVT 399 (957)
Q Consensus 397 L~s 399 (957)
+++
T Consensus 693 l~~ 695 (780)
T 1gm5_A 693 VVG 695 (780)
T ss_dssp CCC
T ss_pred EEC
Confidence 987
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=4.7e-28 Score=308.33 Aligned_cols=270 Identities=16% Similarity=0.129 Sum_probs=179.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh--cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle--~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
...+++|.++++.+.++++++++||||||||+.+...++. ....+++++.|++.+|.|+++++.. ++ ..|..++..
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~l 154 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFGF 154 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEEE
Confidence 4678999999999999999999999999999754444333 2345788999999999999999988 44 455566666
Q ss_pred eecccc---------c-CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccc---------cccc-ccHHHHHHHHH
Q 002165 104 IGHSKH---------L-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---------RSVE-SDLVLVCVKQL 163 (957)
Q Consensus 104 v~~~~~---------~-~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHE---------R~~~-~d~ll~~lk~l 163 (957)
.+.... . ...++|+|+|||+|++.+.. +.+.++++|||||||. |+++ .+|....++.+
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 554332 1 23589999999999887664 3345899999999993 3334 33333323333
Q ss_pred Hh-cC-----------CCceEEEecccCChHHHH-HHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCC
Q 002165 164 LL-KK-----------NDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHG 230 (957)
Q Consensus 164 ~~-~~-----------~~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~ 230 (957)
+. .+ ++.++++||||+.++.+. .++..... +.+...... .-.+...|
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~---i~v~~~~~~----~~~i~~~~------------- 292 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVSV----ARNITHVR------------- 292 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC---CCCCBCCCC----CCCEEEEE-------------
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee---EEeccCCCC----cCCceeEE-------------
Confidence 22 12 678999999995433222 22222100 000000000 00000000
Q ss_pred CccccccccccCCCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEE-Eec
Q 002165 231 MTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH-ILH 309 (957)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~-~lh 309 (957)
.. .. ....+.+++.. . ++++||||++++.++.++..|.. .++.+. .+|
T Consensus 293 ----------~~--------~~----k~~~L~~ll~~----~---~~~~LVF~~s~~~a~~l~~~L~~--~g~~~~~~lh 341 (1104)
T 4ddu_A 293 ----------IS--------SR----SKEKLVELLEI----F---RDGILIFAQTEEEGKELYEYLKR--FKFNVGETWS 341 (1104)
T ss_dssp ----------ES--------CC----CHHHHHHHHHH----H---CSSEEEEESSSHHHHHHHHHHHH--TTCCEEESSS
T ss_pred ----------Ee--------cC----HHHHHHHHHHh----c---CCCEEEEECcHHHHHHHHHHHHh--CCCCeeeEec
Confidence 00 00 01112222222 1 36899999999999999999984 357787 899
Q ss_pred CCCCHHHHHHHHhcccCCc-eEEEE----ccccccCccCCC-eeEEEeCCcce
Q 002165 310 SSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSL 356 (957)
Q Consensus 310 s~l~~~er~~i~~~f~~~r-kVlVa----Tniae~GIdIp~-V~~VId~G~~k 356 (957)
| +|++ ++.|+.|+ +|||| |+++++|||+|+ |++||+.|+++
T Consensus 342 g-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 342 E-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp S-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred C-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 8 2445 89999888 99999 999999999999 99999944444
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=3.9e-27 Score=279.43 Aligned_cols=319 Identities=14% Similarity=0.122 Sum_probs=202.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
..++++|.++++.+.++++++++||||+|||.++..++.. .+..+++++.|++.++.+..+++... +...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT-TSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh-hcCCccceEE
Confidence 4689999999999999999999999999999776555543 34458999999999999999988554 2222223333
Q ss_pred eeecccc---cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccc
Q 002165 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSAT 178 (957)
Q Consensus 103 ~v~~~~~---~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSAT 178 (957)
..+.... .....+|+|+|++.|.+. ....+.++++|||||+| +....+ +..++. ..+..++++||||
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H-~~~~~~-----~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECH-LATGKS-----ISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGG-GCCHHH-----HHHHGGGCTTCCEEEEEESC
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCc-CCCccc-----HHHHHHhcccCcEEEEEEeC
Confidence 3232221 236789999999987643 11234589999999999 444422 233333 3467799999999
Q ss_pred CChH-----HHHHHHhhcCCCceeEEEEecCC--------CccceeeeeeehHHHHHHHhccCCCCccccccccccCCCC
Q 002165 179 ADIT-----KYRDYFRDLGRGERVEVLAIPST--------NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (957)
Q Consensus 179 ld~~-----~~~~~f~~~~~~~~v~v~~~~~~--------~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (957)
+... .+..+++.. +...+.. ......++.+..-........ . ..|.
T Consensus 262 p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~----~~~~---- 320 (510)
T 2oca_A 262 LRDGKANIMQYVGMFGEI-------FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK------G----KTYQ---- 320 (510)
T ss_dssp GGGCSSCHHHHHHHHCSE-------ECCCCCC---------CCEEEEEEEECCHHHHHHHT------T----CCHH----
T ss_pred CCCCcccHHHhHHhhCCe-------EEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc------c----cchH----
Confidence 8432 123344321 1111110 000011111111000000000 0 0000
Q ss_pred CCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhccc
Q 002165 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (957)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~ 325 (957)
.............+.+.+++..... .++..++||++ .++++.+++.|.... ..+..+||+++.++|..+++.|+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~ivf~~-~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~ 394 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQ---KDENAFVMFKH-VSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAE 394 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHT---TTCEEEEEESS-HHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHh---cCCCeEEEEec-HHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHh
Confidence 0000000011122333344443332 22346677777 888999999998543 47899999999999999999999
Q ss_pred CCc-eEEEEc-cccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCe-EEEeec
Q 002165 326 SHR-KVILAT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ-VYRLVT 399 (957)
Q Consensus 326 ~~r-kVlVaT-niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~-~~~L~s 399 (957)
++. +||||| +++++|||+|++++||. |+++.+.. ++.||+||+||.++|. ++.+|+
T Consensus 395 ~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s~~----------~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 395 NGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKSKI----------IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCSCC----------HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCCHH----------HHHHHHhcccccCCCCceEEEEE
Confidence 888 999999 99999999999999998 88776554 4599999999996654 666665
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=4.2e-28 Score=284.92 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=204.4
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
..+.++++|.++++.+.+++++++++|||+|||.+...++...+ .+++++.|++.++.+.++++.. ++.. .|+..
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~-~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v~~~ 164 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-TPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF 164 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHC-SCEEEEESSHHHHHHHHHHGGG-GCGG---GEEEB
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcC-CCEEEEECCHHHHHHHHHHHHh-CCCc---ceEEE
Confidence 35789999999999999999999999999999988877777664 5788888888888898888877 4432 04433
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCChH-
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT- 182 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~~- 182 (957)
.+. .....+|+|+|++.+...+..- ..++++||||||| +..+..+. .+....+..++++||||+...
T Consensus 165 ~g~---~~~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH-~~~~~~~~-----~~~~~~~~~~~l~lSATp~~~~ 232 (472)
T 2fwr_A 165 SGR---IKELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVH-HLPAESYV-----QIAQMSIAPFRLGLTATFERED 232 (472)
T ss_dssp SSS---CBCCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGG-GTTSTTTH-----HHHHTCCCSEEEEEESCCCCTT
T ss_pred CCC---cCCcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCc-CCCChHHH-----HHHHhcCCCeEEEEecCccCCC
Confidence 222 2346789999999998765421 1268999999999 55555443 234445677899999998521
Q ss_pred ----HHHHHHhhcCCCceeEEEEec-----CC--CccceeeeeeehHHHHHHHhccC-----CCCccccc----cccc--
Q 002165 183 ----KYRDYFRDLGRGERVEVLAIP-----ST--NQRTIFQRRVSYLEQVTELLGVD-----HGMTSELS----SLRY-- 240 (957)
Q Consensus 183 ----~~~~~f~~~~~~~~v~v~~~~-----~~--~~~~~~~v~v~yl~~~~~~l~~~-----~~~~~~~~----~~~~-- 240 (957)
.+..+++.. +.... .. .......+.+..-+.....+... ........ ...+
T Consensus 233 ~~~~~l~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 233 GRHEILKEVVGGK-------VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SGGGSHHHHTCCE-------EEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred CHHHHHHHHhCCe-------EeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 244444321 00000 00 00000001111000000000000 00000000 0000
Q ss_pred -cC--CCCCCccccc-----------CChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEE
Q 002165 241 -CS--GPSPSMANAE-----------IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH 306 (957)
Q Consensus 241 -~~--~~~~~~~~~~-----------~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~ 306 (957)
.. ...+...... ......+. +..+..... ++++|||+++.+.++.+++.|. +.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~~~--~~k~lvF~~~~~~~~~l~~~l~-------~~ 372 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRK----LREILERHR--KDKIIIFTRHNELVYRISKVFL-------IP 372 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHH----HHHHHHHTS--SSCBCCBCSCHHHHHHHHHHTT-------CC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHH----HHHHHHhCC--CCcEEEEECCHHHHHHHHHHhC-------cc
Confidence 00 0000000000 00011122 222222222 5699999999999999999885 44
Q ss_pred EecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCC
Q 002165 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (957)
Q Consensus 307 ~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (957)
.+||+++..+|..+++.|+++. +|||||+++++|+|+|++++||+ ||++.+. +++.||+||
T Consensus 373 ~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~~~~s~----------~~~~Q~~GR 434 (472)
T 2fwr_A 373 AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSGSGSA----------REYIQRLGR 434 (472)
T ss_dssp BCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECCSSCC----------HHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------ECCCCCH----------HHHHHHHhh
Confidence 6899999999999999999888 99999999999999999999998 8887644 455999999
Q ss_pred CCCCCCC----eEEEeechh
Q 002165 386 TGRTCDG----QVYRLVTKS 401 (957)
Q Consensus 386 AGR~~~G----~~~~L~s~~ 401 (957)
|||.++| .+|.++++.
T Consensus 435 ~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SBCCCTTTCCEEEEEEEECS
T ss_pred ccCCCCCCceEEEEEEEeCC
Confidence 9999777 466777754
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=1.1e-26 Score=295.94 Aligned_cols=261 Identities=18% Similarity=0.200 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC----eeEE
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG----EVGY 102 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle---~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~----~Vgy 102 (957)
++|.++++.+.++++++++||||||||+ +..+++. ....+++++.|++.+|.|+++.+..... ..|. .++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~-~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE-KAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT-TTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh-hcCCCccceEEE
Confidence 9999999999999999999999999995 3333332 2234788888999999999888775432 2222 3443
Q ss_pred eeecc---------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccc-cHHHHHHHHHH--------
Q 002165 103 HIGHS---------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES-DLVLVCVKQLL-------- 164 (957)
Q Consensus 103 ~v~~~---------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~-d~ll~~lk~l~-------- 164 (957)
.++.. ..... ++|+|+|||+|++.+.. +.++++||||||| +.++. .-+..+++.+-
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah-~~l~~~~~~~~i~~~lgf~~~~~~~ 210 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVD-AILKASKNVDKLLHLLGFHYDLKTK 210 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHH-HHHTSTHHHHHHHHHTTEEEETTTT
T ss_pred EeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChh-hhhhccccHHHHHHHhCcchhhhhh
Confidence 33321 12233 89999999999987654 4489999999999 44441 11222222221
Q ss_pred hcCCCceEEEecccCChH--HHHHHHhhcCCCceeEEEEecCCCccceeeeeeehHHHHHHHhccCCCCccccccccccC
Q 002165 165 LKKNDLRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (957)
Q Consensus 165 ~~~~~lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~~~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (957)
......+++++|||+... ....++..... +. +.... ...-.+...++ .
T Consensus 211 ~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~---i~---v~~~~-~~~~~i~~~~~-----------------------~ 260 (1054)
T 1gku_B 211 SWVGEARGCLMVSTATAKKGKKAELFRQLLN---FD---IGSSR-ITVRNVEDVAV-----------------------N 260 (1054)
T ss_dssp EEEECCSSEEEECCCCSCCCTTHHHHHHHHC---CC---CSCCE-ECCCCEEEEEE-----------------------S
T ss_pred hcccCCceEEEEecCCCchhHHHHHhhcceE---EE---ccCcc-cCcCCceEEEe-----------------------c
Confidence 012456889999997543 11123322100 00 00000 00000111110 0
Q ss_pred CCCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHh
Q 002165 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK 322 (957)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~ 322 (957)
.... ..+..+.... ++++||||+++++++.+++.|... +.+..+||++. .+++
T Consensus 261 --------~~k~--------~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~~-----~~l~ 313 (1054)
T 1gku_B 261 --------DESI--------STLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATKK-----GDYE 313 (1054)
T ss_dssp --------CCCT--------TTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSSS-----HHHH
T ss_pred --------hhHH--------HHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccHH-----HHHH
Confidence 0000 0111122221 368999999999999999999854 88999999984 5577
Q ss_pred cccCCc-eEEEE----ccccccCccCCCe-eEEEeCCcc
Q 002165 323 ICKSHR-KVILA----TNIAESSVTIPKV-AYVIDSCRS 355 (957)
Q Consensus 323 ~f~~~r-kVlVa----Tniae~GIdIp~V-~~VId~G~~ 355 (957)
.|+.|+ +|||| ||++++|||+|+| ++||+.|.+
T Consensus 314 ~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 314 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 788888 99999 9999999999995 999996666
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.93 E-value=8.3e-26 Score=272.91 Aligned_cols=330 Identities=15% Similarity=0.131 Sum_probs=173.5
Q ss_pred CCCchHHHHHHHHHHHc-----CCeEEEEcCCCCcHHHHHHHHH---Hhc--------CCCcEEEeccHHHHHHHHHHHH
Q 002165 25 SLPVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQFL---LAE--------NMEPILCTQPRRFAVVAVAKMV 88 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~-----~~~vII~a~TGSGKTt~lp~~l---le~--------~~~~Iivt~Prrlaa~~va~rv 88 (957)
...++++|.++++.+.+ +++++++++||||||.++..++ +.. ...+++++.|++.++.|.....
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 35789999999998865 4679999999999996654443 233 3457899999988888877322
Q ss_pred HhhcCCccCCeeEEeeecccccCCCCcEEEEcHHHHHHHHHc----cCCCcCcceEEEEcccccccccccHHHHHHHHHH
Q 002165 89 AKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRD----RGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (957)
Q Consensus 89 a~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~----~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~ 164 (957)
.. .+|..++... ......+.+|+|+|++.|...... ..+....+++||||||| |....+ ....+.++
T Consensus 256 ~~----~~~~~~~~~~--~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 256 FT----PFGDARHKIE--GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp CT----TTCSSEEECC--C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred HH----hcchhhhhhh--ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 22 2333333221 223346789999999999876531 22334478999999999 665432 12234444
Q ss_pred hcCCCceEEEecccCCh---HHHHHHHhhcCCCceeEEEEecCC-CccceeeeeeehHHHHHHHhccCCCCccccccccc
Q 002165 165 LKKNDLRVVLMSATADI---TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (957)
Q Consensus 165 ~~~~~lklIlmSATld~---~~~~~~f~~~~~~~~v~v~~~~~~-~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (957)
...+..++|+||||+.. .....+|+.. +........ ..+...+..+..+....+..+.. ..... ...+
T Consensus 327 ~~~~~~~~l~lTATP~~~~~~~~~~~f~~~-----~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~ 398 (590)
T 3h1t_A 327 EYFEPAFQIGMTATPLREDNRDTYRYFGNP-----IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWR--PSKGD-VDRF 398 (590)
T ss_dssp HHSTTSEEEEEESSCSCTTTHHHHHHSCSC-----SEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HhCCcceEEEeccccccccchhHHHHcCCc-----eEecCHHHHhhCCccCCcEEEEeeeeeeccccc--ccccc-cccc
Confidence 44556789999999642 3455566431 111000000 00000000000000000000000 00000 0000
Q ss_pred cCC-CCCCcccccCCh-----hHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCC------CcEEEEe
Q 002165 241 CSG-PSPSMANAEIKP-----EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------FFKVHIL 308 (957)
Q Consensus 241 ~~~-~~~~~~~~~~~~-----~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~------~~~v~~l 308 (957)
... ....+....... .....+.+.+....... ...+++||||++++.++.+++.|..... .-.+..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 000 000000000000 01122222222222221 2247999999999999999999864321 2237778
Q ss_pred cCCCCHHHHHHHHhcccCCc-e---EEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcC
Q 002165 309 HSSVDTEQALMAMKICKSHR-K---VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (957)
Q Consensus 309 hs~l~~~er~~i~~~f~~~r-k---VlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (957)
||.++. +|..+++.|+++. + |+|||+++++|||+|++++||. |+++. |...+.||+|
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~~~~----------s~~~~~Q~iG 538 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------ARVVN----------SMSEFKQIVG 538 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ESCCC----------CHHHHHHHHT
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------EecCC----------ChHHHHHHHh
Confidence 998754 6889999998765 4 8999999999999999999998 88876 4556699999
Q ss_pred CCCCCCC
Q 002165 385 RTGRTCD 391 (957)
Q Consensus 385 RAGR~~~ 391 (957)
|+||.++
T Consensus 539 R~~R~~~ 545 (590)
T 3h1t_A 539 RGTRLRE 545 (590)
T ss_dssp TSCCCBG
T ss_pred hhcccCc
Confidence 9999865
No 51
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=2.3e-25 Score=268.29 Aligned_cols=342 Identities=16% Similarity=0.119 Sum_probs=201.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+-.+++|...+..+..|+ |..++||+|||..+..+++ ......++|+.|+|-+|.+.++.+..... .+|-.||..
T Consensus 82 ~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~-~lgl~v~~i 158 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFE-FLGLTVGLN 158 (844)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH-HTTCCEEEC
T ss_pred CCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHh-hcCCeEEEE
Confidence 467899999999999998 9999999999955444443 22223566666777777777665544221 234445544
Q ss_pred eecc----cccCCCCcEEEEcHHHH-HHHHHcc------CCCcCcceEEEEcccccccc-cc---------------cHH
Q 002165 104 IGHS----KHLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHERSV-ES---------------DLV 156 (957)
Q Consensus 104 v~~~----~~~~~~t~Ivv~T~g~L-l~~l~~~------~l~l~~~~~VIIDEaHER~~-~~---------------d~l 156 (957)
++.. .....+++|+|+|||.| .+.+.+. .+.+..+.++|||||| +++ +. ++.
T Consensus 159 ~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD-~mLiDea~tplIisg~~~~~~~~~ 237 (844)
T 1tf5_A 159 LNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVD-SILIDEARTPLIISGQAAKSTKLY 237 (844)
T ss_dssp CTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHH-HHHTTTTTCEEEEEEEEECCCHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchh-hhhhhccccchhhcCCcccchhHH
Confidence 3321 11123579999999999 6665543 2344589999999999 444 43 233
Q ss_pred HHHHHHHHhcC---------CCceEE-----------------EecccCCh--HHHHH-----H-HhhcCCCcee---EE
Q 002165 157 LVCVKQLLLKK---------NDLRVV-----------------LMSATADI--TKYRD-----Y-FRDLGRGERV---EV 199 (957)
Q Consensus 157 l~~lk~l~~~~---------~~lklI-----------------lmSATld~--~~~~~-----~-f~~~~~~~~v---~v 199 (957)
..+-+.+.... ++.++. ++|||... ..+.. + |.. .....+ ++
T Consensus 238 ~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~-d~dYiv~dg~v 316 (844)
T 1tf5_A 238 VQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQK-DVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCB-TTTEEEETTEE
T ss_pred HHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhc-CCceEEecCee
Confidence 33333332222 234555 88999531 12211 1 110 000000 01
Q ss_pred EEecCC---------------------------Cccce-eeeee-eh-----------------HHHHHHHhccCCCCcc
Q 002165 200 LAIPST---------------------------NQRTI-FQRRV-SY-----------------LEQVTELLGVDHGMTS 233 (957)
Q Consensus 200 ~~~~~~---------------------------~~~~~-~~v~v-~y-----------------l~~~~~~l~~~~~~~~ 233 (957)
..+... ..... -.+.. .| .++..+.++. ..
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l----~v 392 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM----QV 392 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC----CE
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC----ce
Confidence 111100 00000 00010 01 1222333321 10
Q ss_pred ccccccccCC--CCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCC
Q 002165 234 ELSSLRYCSG--PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (957)
Q Consensus 234 ~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~ 311 (957)
..+....... ..++... ....+....+.+.+...+.. +.++||||++++.++.++..|.. .++.+..+||.
T Consensus 393 v~IPtn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~----~~pvLVft~s~~~se~Ls~~L~~--~gi~~~vLhg~ 465 (844)
T 1tf5_A 393 VTIPTNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMT----GQPVLVGTVAVETSELISKLLKN--KGIPHQVLNAK 465 (844)
T ss_dssp EECCCSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHH----TCCEEEEESCHHHHHHHHHHHHT--TTCCCEEECSS
T ss_pred EEecCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHHHHHHH--CCCCEEEeeCC
Confidence 0000000000 0000000 01122334444444443332 34899999999999999999984 56888999999
Q ss_pred CCHHHHHHHHhcccCCceEEEEccccccCccCC--------CeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhc
Q 002165 312 VDTEQALMAMKICKSHRKVILATNIAESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (957)
Q Consensus 312 l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp--------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (957)
+...+|..+.++++.+ .|+||||+|++|+||+ ++.+||+ ||.|... ..|.||+
T Consensus 466 ~~~rEr~ii~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--------~d~p~s~----------r~y~hr~ 526 (844)
T 1tf5_A 466 NHEREAQIIEEAGQKG-AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TERHESR----------RIDNQLR 526 (844)
T ss_dssp CHHHHHHHHTTTTSTT-CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SSCCSSH----------HHHHHHH
T ss_pred ccHHHHHHHHHcCCCC-eEEEeCCccccCcCccccchhhhcCCcEEEE--------ecCCCCH----------HHHHhhc
Confidence 9888887666666544 7999999999999999 8999999 8888744 4559999
Q ss_pred CCCCCC-CCCeEEEeechhh
Q 002165 384 GRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 384 GRAGR~-~~G~~~~L~s~~~ 402 (957)
||+||. .+|.++.+++.++
T Consensus 527 GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 527 GRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TTSSGGGCCEEEEEEEETTS
T ss_pred CccccCCCCCeEEEEecHHH
Confidence 999999 7899999988654
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=237.84 Aligned_cols=165 Identities=38% Similarity=0.630 Sum_probs=149.2
Q ss_pred cCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC----C---CcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----M---EPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 23 r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~----~---~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
+..+|++++|.++++.+.++++++++|+|||||||+++.++++.. . ..++++.|++.++.+++++++.+++..
T Consensus 57 ~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 57 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 467999999999999999999999999999999999998887631 1 278999999999999999999999999
Q ss_pred cCCeeEEeeecccccC-CCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 96 LGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 96 lg~~Vgy~v~~~~~~~-~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
+|..+||.++++.... .+++|+|+|||+|++.+... +.++++|||||||+|+++.|+++..++.+....++.|+|+
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~---l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHC---CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhh---hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEE
Confidence 9999999998877664 67999999999999998763 5699999999999988999999999999998889999999
Q ss_pred ecccCChHHHHHHHhh
Q 002165 175 MSATADITKYRDYFRD 190 (957)
Q Consensus 175 mSATld~~~~~~~f~~ 190 (957)
||||++.+.+.+||+.
T Consensus 214 ~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 214 MSATIDTSMFCEYFFN 229 (235)
T ss_dssp EECSSCCHHHHHHTTS
T ss_pred EecCCCHHHHHHHcCC
Confidence 9999999999999975
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=4.6e-24 Score=256.21 Aligned_cols=106 Identities=21% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEccccccCccCCC----------
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPK---------- 345 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp~---------- 345 (957)
+.++|||+++++.++.++..|.. .++....+||.....++..+.++|+.| .|+||||+|++|+||+.
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~--~gi~~~vLnak~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~gn~~~~~~~ 517 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTK--AGIKHNVLNAKFHANEAAIVAQAGYPA-AVTIATNMAGRGTDIVLGGSWQAEVAA 517 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHH--TTCCCEECCTTCHHHHHHHHHTTTSTT-CEEEEESCCSSCSCCCTTCCHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHH--CCCCEEEecCChhHHHHHHHHhcCCCC-eEEEecccccCCcCccCCCchHhhhhh
Confidence 35899999999999999999984 457888999999888888888888776 79999999999999997
Q ss_pred ----------------------e-----eEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEe
Q 002165 346 ----------------------V-----AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (957)
Q Consensus 346 ----------------------V-----~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L 397 (957)
| .+||+ |+.+. |+..+.||+||+||. .+|.++.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pe----------s~riy~qr~GRTGRqGd~G~s~~f 579 (853)
T 2fsf_A 518 LENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHE----------SRRIDNQLRGRSGRQGDAGSSRFY 579 (853)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred cccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCC----------CHHHHHhhccccccCCCCeeEEEE
Confidence 4 69999 88776 455569999999999 78999888
Q ss_pred echhh
Q 002165 398 VTKSF 402 (957)
Q Consensus 398 ~s~~~ 402 (957)
++.++
T Consensus 580 ls~eD 584 (853)
T 2fsf_A 580 LSMED 584 (853)
T ss_dssp EETTS
T ss_pred ecccH
Confidence 87644
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=1.3e-23 Score=252.36 Aligned_cols=341 Identities=16% Similarity=0.154 Sum_probs=203.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH--HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~l--p~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+-.+++|...+..+..|+ |..++||+|||..+ |.++.......+.|+.|++.+|.+.++.+.... ..+|-.||..
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~-~~lGLsv~~i 186 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH-RFLGLQVGVI 186 (922)
T ss_dssp CCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH-HHTTCCEEEC
T ss_pred CCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCeEEEE
Confidence 567899999999999888 99999999999544 444322222356666677777777766554422 1344455544
Q ss_pred eeccc----ccCCCCcEEEEcHHHH-HHHHHcc------CCCcCcceEEEEcccccccc-c---------------ccHH
Q 002165 104 IGHSK----HLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHERSV-E---------------SDLV 156 (957)
Q Consensus 104 v~~~~----~~~~~t~Ivv~T~g~L-l~~l~~~------~l~l~~~~~VIIDEaHER~~-~---------------~d~l 156 (957)
++..+ ...-.++|+|+|||.| ++.+.+. .+.+..+.++|||||| +.+ + +++.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhHH
Confidence 33221 1122579999999999 6776653 2444589999999999 444 3 2454
Q ss_pred HHHHHHHHhcC---------CCceEE-----------------EecccCCh--HHHHH------HHhhcCCCcee---EE
Q 002165 157 LVCVKQLLLKK---------NDLRVV-----------------LMSATADI--TKYRD------YFRDLGRGERV---EV 199 (957)
Q Consensus 157 l~~lk~l~~~~---------~~lklI-----------------lmSATld~--~~~~~------~f~~~~~~~~v---~v 199 (957)
..+-+.+.... ++.++. ++|||... ..+.. +|.. ...+.+ ++
T Consensus 266 ~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~-d~dYiV~dg~v 344 (922)
T 1nkt_A 266 TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR-DKDYIVRDGEV 344 (922)
T ss_dssp HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB-TTTEEECSSCE
T ss_pred HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc-ccceeeecCce
Confidence 44444443333 456777 88999642 22211 1210 000000 11
Q ss_pred EEecC---C------------------------Ccc-ceeeeee-ehH-----------------HHHHHHhccCCCCcc
Q 002165 200 LAIPS---T------------------------NQR-TIFQRRV-SYL-----------------EQVTELLGVDHGMTS 233 (957)
Q Consensus 200 ~~~~~---~------------------------~~~-~~~~v~v-~yl-----------------~~~~~~l~~~~~~~~ 233 (957)
+.+.. . +.. ..-.+.. .|. ++..+.++ +..
T Consensus 345 viVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~----l~v 420 (922)
T 1nkt_A 345 LIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK----LGV 420 (922)
T ss_dssp EEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC----CEE
T ss_pred EEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC----CCe
Confidence 11110 0 000 0000110 111 12223332 111
Q ss_pred ccccccccCC--CCCCcccccCChhHHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCC
Q 002165 234 ELSSLRYCSG--PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (957)
Q Consensus 234 ~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~ 311 (957)
-.+....... ..++.... ...+..+.+.+.+...+.. +.++|||+++++.++.++..|.. .++....+||.
T Consensus 421 v~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~----gqpvLVft~Sie~sE~Ls~~L~~--~Gi~~~vLnak 493 (922)
T 1nkt_A 421 VSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAK----GQPVLIGTTSVERSEYLSRQFTK--RRIPHNVLNAK 493 (922)
T ss_dssp EECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHH--TTCCCEEECSS
T ss_pred EEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHHHHHHH--CCCCEEEecCC
Confidence 1111100000 00000101 1123344444444444332 34899999999999999999984 45788899999
Q ss_pred CCHHHHHHHHhcccCCceEEEEccccccCccCCCe---------------------------------------------
Q 002165 312 VDTEQALMAMKICKSHRKVILATNIAESSVTIPKV--------------------------------------------- 346 (957)
Q Consensus 312 l~~~er~~i~~~f~~~rkVlVaTniae~GIdIp~V--------------------------------------------- 346 (957)
....++..+.++++.| .|+||||+|++|+||+.+
T Consensus 494 ~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG-GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp CHHHHHHHHHTTTSTT-CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHhcCCCC-eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 8877777777777766 799999999999999975
Q ss_pred -------eEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 347 -------AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 347 -------~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
.+||+ |+.+. |+..+.||+||+||. .||.+..+++.+
T Consensus 573 ~V~~~GGlhVI~--------te~pe----------s~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 573 EVIEAGGLYVLG--------TERHE----------SRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHTTSEEEEE--------CSCCS----------SHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHhcCCcEEEe--------ccCCC----------CHHHHHHHhcccccCCCCeeEEEEechh
Confidence 59999 88776 455569999999999 789998888754
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.87 E-value=1.3e-22 Score=212.50 Aligned_cols=165 Identities=20% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++||||+++++++.+++.|.. .++.+..+||++++.+|..+++.|+.+. +|||||+++++|||+|++++||+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~--- 105 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLR--LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--- 105 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH--HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE---
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH--cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE---
Confidence 46999999999999999999974 3578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh--------------hhhccCCCCCchhcCCH
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF--------------FGTLEDHECPAILRLSL 419 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~--------------~~~l~~~~~PEI~r~~L 419 (957)
||++. |.++|.||+|||||. ++|.||.+|++.+ +..+.....|||.+..+
T Consensus 106 -----~~~p~----------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~ 170 (212)
T 3eaq_A 106 -----YRLPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKW 170 (212)
T ss_dssp -----SSCCS----------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHH
T ss_pred -----CCCCc----------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHH
Confidence 77765 567779999999999 5899999999866 33345566778889899
Q ss_pred HHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHH
Q 002165 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLL 460 (957)
Q Consensus 420 ~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L 460 (957)
..+++.++.+..........+...++++|+++.+..|+..|
T Consensus 171 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 171 RHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 99998886433222222333445778999999999998776
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=1.3e-21 Score=247.54 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=91.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC---ceEEEEccccccCccCCCeeEEEeC
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---RKVILATNIAESSVTIPKVAYVIDS 352 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~---rkVlVaTniae~GIdIp~V~~VId~ 352 (957)
++++||||+++..++.++..|... .++.+..+||+|+..+|..+++.|+.+ .+|||||+++++|||+|++++||+
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~-~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~- 580 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER-EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM- 580 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT-TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC-
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE-
Confidence 579999999999999999999842 268899999999999999999999876 399999999999999999999999
Q ss_pred CcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC-CC--eEEEeechh
Q 002165 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DG--QVYRLVTKS 401 (957)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G--~~~~L~s~~ 401 (957)
||++.+. +.+.||+||+||.+ .| .+|+++.+.
T Consensus 581 -------~d~p~~~----------~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 581 -------FDLPFNP----------DLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp -------SSCCSSH----------HHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred -------ecCCCCH----------HHHHHHhhccccCCCCceEEEEEecCCC
Confidence 9988754 45599999999983 34 456655543
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=4.4e-21 Score=226.77 Aligned_cols=344 Identities=13% Similarity=0.087 Sum_probs=189.2
Q ss_pred CCCchHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHHHh---c-CCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 25 SLPVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLLA---E-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l----~~~~~vII~a~TGSGKTt~lp~~lle---~-~~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
...++++|.++++.+ ..++.+|+..+||+|||.+...++.. . ...+++|+.|..+ +.+..+.+.+...
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l-~~qw~~e~~~~~~--- 110 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSV-LKNWEEELSKFAP--- 110 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTT-HHHHHHHHHHHCT---
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHH-HHHHHHHHHHHCC---
Confidence 356899999998876 45789999999999999765544432 2 2346777778665 4556666655432
Q ss_pred CCeeEEeeecc-cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 97 GGEVGYHIGHS-KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 97 g~~Vgy~v~~~-~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
+..+....+.. .......+|+++|++++.+... +...++++||+|||| +..+.+.. ..+.+... +..+.+++
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH-~~kn~~~~--~~~~l~~l-~~~~~l~L 183 (500)
T 1z63_A 111 HLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQ-NIKNPQTK--IFKAVKEL-KSKYRIAL 183 (500)
T ss_dssp TSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGG-GGSCTTSH--HHHHHHTS-CEEEEEEE
T ss_pred CceEEEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCcc-ccCCHhHH--HHHHHHhh-ccCcEEEE
Confidence 11222111111 1123457899999999976543 122378999999999 55443311 12222222 34578999
Q ss_pred cccCChHHHHHHH---hhcCCC-------------------------------ceeEEEEec-------CCCccceeeee
Q 002165 176 SATADITKYRDYF---RDLGRG-------------------------------ERVEVLAIP-------STNQRTIFQRR 214 (957)
Q Consensus 176 SATld~~~~~~~f---~~~~~~-------------------------------~~v~v~~~~-------~~~~~~~~~v~ 214 (957)
|||+-.+...+++ ..+... .++-+.... ..+......+.
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 9997333222222 111000 000000000 00000000000
Q ss_pred eehHHHHHHHhc-----cCCCCcccc------------c-cccccCCCCC--CcccccCChhHHHHHHHHHHHHHhhCCC
Q 002165 215 VSYLEQVTELLG-----VDHGMTSEL------------S-SLRYCSGPSP--SMANAEIKPEVHKLIHDLVLHIHKNESD 274 (957)
Q Consensus 215 v~yl~~~~~~l~-----~~~~~~~~~------------~-~~~~~~~~~~--~~~~~~~~~~~~~li~~lv~~i~~~~~~ 274 (957)
+..-+...+.+. ......... . ..+.+..+.- ..............+.+++..+..
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~---- 339 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALD---- 339 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHc----
Confidence 000000000000 000000000 0 0000000000 000000001111222233333221
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC-c-e-EEEEccccccCccCCCeeEEEe
Q 002165 275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-K-VILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 275 ~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~-r-k-VlVaTniae~GIdIp~V~~VId 351 (957)
.+.++|||+.....++.+.+.|... .++.+..+||+++.++|..+++.|+++ . + +|+||+++++|+|+|++++||.
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH-HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh-hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 2468999999999999999988632 146678899999999999999999876 3 3 8999999999999999999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechhh
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF 402 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~~ 402 (957)
||++.+...+ .||.||++|.+ +..+|+|+++..
T Consensus 419 --------~d~~~~~~~~----------~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 419 --------FDRWWNPAVE----------DQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp --------SSCCSCC-------------CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred --------eCCCCCcchH----------HHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9998876666 89999999984 345788887643
No 58
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=6.8e-22 Score=217.13 Aligned_cols=170 Identities=20% Similarity=0.221 Sum_probs=137.3
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++||||+++++++.+++.|.. .++.+..+||+|++.+|..+++.|+++. +||||||++++|||||++++||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~--~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--- 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR--LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--- 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT--TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE---
Confidence 46999999999999999999984 4688999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh--------------hhhccCCCCCchhcCCH
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF--------------FGTLEDHECPAILRLSL 419 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~--------------~~~l~~~~~PEI~r~~L 419 (957)
||.+.+ .++|.||+|||||. ++|.||.+|++.+ +..+.....|||.+..+
T Consensus 103 -----~d~p~s----------~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~ 167 (300)
T 3i32_A 103 -----YRMPDR----------AEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKW 167 (300)
T ss_dssp -----SSCCSS----------TTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHH
T ss_pred -----cCCCCC----------HHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHH
Confidence 887764 44569999999999 5899999999865 33455667789999999
Q ss_pred HHHHHHHhhhhcccCCChhHhhhcccCCCCHHHHHHHHHHHHHcCc
Q 002165 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRA 465 (957)
Q Consensus 420 ~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lga 465 (957)
..+++.++.+....+.....+..+++++|+++.+..|+..|.....
T Consensus 168 ~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 168 RHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 9999988543222222222334467888999999999999976554
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.84 E-value=1.6e-20 Score=236.08 Aligned_cols=334 Identities=15% Similarity=0.171 Sum_probs=193.7
Q ss_pred CCchHHHHHHHHHHHc--------------CCeEEEEcCCCCcHHHHHHHH---HHhcC-CCcEEEeccHHHHHHHHHHH
Q 002165 26 LPVMSLREKIVEKVLE--------------NRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKM 87 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~--------------~~~vII~a~TGSGKTt~lp~~---lle~~-~~~Iivt~Prrlaa~~va~r 87 (957)
..++++|.++++.+.+ +++.+|.++||||||..+... +...+ ..+++++.||+.++.|+.+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 4578999999998765 368999999999999554222 21212 24799999999999999887
Q ss_pred HHhhcCCccCCeeEEeee-ccccc-CCCCcEEEEcHHHHHHHHHccC-C-CcCcceEEEEcccccccccccHHHHHHHHH
Q 002165 88 VAKGRNCELGGEVGYHIG-HSKHL-SERSKIVFKTAGVLLDEMRDRG-L-NALKYKVIILDEVHERSVESDLVLVCVKQL 163 (957)
Q Consensus 88 va~e~~~~lg~~Vgy~v~-~~~~~-~~~t~Ivv~T~g~Ll~~l~~~~-l-~l~~~~~VIIDEaHER~~~~d~ll~~lk~l 163 (957)
+.......+.. +.... ..... ..+.+|+|+|++.|...+.... + .+..+.+||+|||| |+...++ .+.+
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNL 422 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHH
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHH
Confidence 76643221211 11100 11111 3468999999999998776432 1 23478999999999 7765443 3344
Q ss_pred HhcCCCceEEEecccCCh-------HHHHHHHhhcCCCceeEEEEecCC-CccceeeeeeehHH--HHHHHhccCCCCcc
Q 002165 164 LLKKNDLRVVLMSATADI-------TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLE--QVTELLGVDHGMTS 233 (957)
Q Consensus 164 ~~~~~~lklIlmSATld~-------~~~~~~f~~~~~~~~v~v~~~~~~-~~~~~~~v~v~yl~--~~~~~l~~~~~~~~ 233 (957)
....++.++++||||+.. .....+|+.. +....+... ..+...|+.+.|.. ...+..... ...
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-----i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e--~d~ 495 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-----LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE--TDE 495 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-----EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC--CCH
T ss_pred HHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-----eEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc--ccH
Confidence 445577899999999742 2455667531 111110000 01112222222211 000000000 000
Q ss_pred ccccccccCCCCCCcccccCChhH-HHHHHHHHHHHHhhCC-----CCCCcEEEEeCCHHHHHHHHHHhcCCC-------
Q 002165 234 ELSSLRYCSGPSPSMANAEIKPEV-HKLIHDLVLHIHKNES-----DIEKSILVFLPTYYALEQQWHLMKPLS------- 300 (957)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~lv~~i~~~~~-----~~~g~iLVFl~~~~~ie~l~~~L~~~~------- 300 (957)
. .+..... ......+.. ..++..++.+...... ..++++||||++++.+..+++.|....
T Consensus 496 ~----~~~~i~~---~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~ 568 (1038)
T 2w00_A 496 K----KLSAAEN---QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKS 568 (1038)
T ss_dssp H----HHHHTCS---TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTS
T ss_pred H----HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccc
Confidence 0 0000000 000011121 2223334444432211 123589999999999999988886432
Q ss_pred ---CCcEE-EEecCC----------C----------CHH-----------------------------HHHHHHhcccCC
Q 002165 301 ---SFFKV-HILHSS----------V----------DTE-----------------------------QALMAMKICKSH 327 (957)
Q Consensus 301 ---~~~~v-~~lhs~----------l----------~~~-----------------------------er~~i~~~f~~~ 327 (957)
.++.+ ..+|++ + ++. +|..+++.|+++
T Consensus 569 ~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g 648 (1038)
T 2w00_A 569 ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ 648 (1038)
T ss_dssp SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT
T ss_pred cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC
Confidence 22444 445542 2 221 367788889998
Q ss_pred c-eEEEEccccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCC-----CeEEEeec
Q 002165 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD-----GQVYRLVT 399 (957)
Q Consensus 328 r-kVlVaTniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-----G~~~~L~s 399 (957)
. +|||+|+++.+|+|+|.+.+ +. +|.+... ..++||+||+||..+ |.++-+..
T Consensus 649 ~i~ILIvvd~lltGfDiP~l~t-ly--------lDkpl~~----------~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 649 DIDLLIVVGMFLTGFDAPTLNT-LF--------VDKNLRY----------HGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSEEEESSTTSSSCCCTTEEE-EE--------EESCCCH----------HHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCeEEEEcchHHhCcCcccccE-EE--------EccCCCc----------cceeehhhccCcCCCCCCCcEEEEEccc
Confidence 8 99999999999999999954 54 7877644 455999999999954 44554443
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=6.6e-18 Score=205.30 Aligned_cols=107 Identities=11% Similarity=0.142 Sum_probs=91.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc----eEEEEccccccCccCCCeeEEEe
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR----KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r----kVlVaTniae~GIdIp~V~~VId 351 (957)
+.++|||+.....++.+...|.. .++.+..+||+++.++|..+++.|+.+. .+|++|.++++|||++++++||.
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRN--RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH--HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred CCEEEEEEccHHHHHHHHHHHHH--CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 46999999999999999998873 4577899999999999999999998764 48999999999999999999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechhh
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF 402 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~~ 402 (957)
||++.+. +.+.||.||++|.+ +..+|+|+++..
T Consensus 494 --------~d~~wnp----------~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 494 --------FDPDWNP----------ANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp --------CSCCSSH----------HHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred --------ECCCCCc----------cHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 9998754 45599999999984 456888887643
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.8e-19 Score=220.59 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=93.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc----eEEEEccccccCccCCCeeEEEe
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR----KVILATNIAESSVTIPKVAYVID 351 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r----kVlVaTniae~GIdIp~V~~VId 351 (957)
+.++|||+.....++.+...|.. .++.+..+||+++..+|..+++.|+.+. .+|++|.+++.|||++++++||.
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~--~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSI--KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHH--HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHh--CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 46999999999999999999973 4577889999999999999999998643 59999999999999999999999
Q ss_pred CCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC---CCCeEEEeechhhh
Q 002165 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (957)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~~~~L~s~~~~ 403 (957)
||++.+...+ .||.||++|. ++..+|+|+++...
T Consensus 650 --------~D~~wnp~~~----------~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 650 --------FDSDWNPQAD----------LQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp --------SSCCSCSHHH----------HHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred --------ecCCCChhhH----------HHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 9998866555 9999999997 45778999987544
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.78 E-value=1.5e-17 Score=196.04 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEcccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTnia 337 (957)
...+.+.+...+.. +.++|||+++++.++.++..|.. .++....+||+....++..+..+++.+ .|+||||+|
T Consensus 460 ~~al~~~I~~~~~~----gqpVLVFt~S~e~sE~Ls~~L~~--~Gi~~~vLhgkq~~rE~~ii~~ag~~g-~VtVATdmA 532 (822)
T 3jux_A 460 YEKIVEEIEKRYKK----GQPVLVGTTSIEKSELLSSMLKK--KGIPHQVLNAKYHEKEAEIVAKAGQKG-MVTIATNMA 532 (822)
T ss_dssp HHHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHT--TTCCCEEECSCHHHHHHHHHHHHHSTT-CEEEEETTT
T ss_pred HHHHHHHHHHHhhC----CCCEEEEECCHHHHHHHHHHHHH--CCCCEEEeeCCchHHHHHHHHhCCCCC-eEEEEcchh
Confidence 34444444444333 35899999999999999999984 467888999996655665555555444 799999999
Q ss_pred ccCccCC--------CeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhh
Q 002165 338 ESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (957)
Q Consensus 338 e~GIdIp--------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~ 402 (957)
++|+||+ +..+||+ |+.|... ..+.||+||+||. .+|.++.+++.++
T Consensus 533 gRGtDI~lg~~V~~~GglhVIn--------te~Pes~----------r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIG--------TERHESR----------RIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEE--------SSCCSSH----------HHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hCCcCccCCcchhhcCCCEEEe--------cCCCCCH----------HHHHHhhCccccCCCCeeEEEEechhH
Confidence 9999998 7779999 8888744 4559999999999 6899999888654
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=179.14 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=117.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----------CCCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------NMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----------~~~~Iivt~Prrlaa~~va~rva~e~~~~ 95 (957)
..+++|.++++.+.++++++++||||||||..+...++.. ...+++++.|++.++.++++++......
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK- 120 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCT-
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 5789999999999999999999999999996554444331 3346888899999999999988775322
Q ss_pred cCCeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCC
Q 002165 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (957)
Q Consensus 96 lg~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~ 169 (957)
+..++...+.. .....+.+|+|+|||+|.+.+..+.+.+.++++||||||| +..+.++...+.+.+...+++
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 121 -GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp -TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHHHHHHHHHSCSS
T ss_pred -CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHHHHHHHHhCCcC
Confidence 22222222211 1123567999999999999888777667799999999999 777777777766666666788
Q ss_pred ceEEEecccCChH
Q 002165 170 LRVVLMSATADIT 182 (957)
Q Consensus 170 lklIlmSATld~~ 182 (957)
.|+++||||++.+
T Consensus 199 ~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 199 RQTVMTSATWPDT 211 (228)
T ss_dssp CEEEEEESCCCHH
T ss_pred CeEEEEEeeCCHH
Confidence 9999999999765
No 64
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.77 E-value=5.6e-18 Score=181.64 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.++++|.++++.+.++++++++||||||||+++..++++. ...+++++.|++.++.++++.+..... ..+..++
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~~~~~ 143 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-SIGVQSA 143 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-GGTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-cCCeeEE
Confidence 6789999999999999999999999999998777666543 224689999999999999887755322 2333444
Q ss_pred Eeeeccc------ccCCCCcEEEEcHHHHHHHHHc-cCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 102 YHIGHSK------HLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 102 y~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
...+... ....+++|+|+|||+|++.+.. +.+.+.++++||||||| +..+.++...+.+.+...+++.++++
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 144 VIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDRKTFL 222 (249)
T ss_dssp EECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSSEEEE
T ss_pred EEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCCeEEE
Confidence 4333221 1245789999999999998875 44456689999999999 78887887776666666667899999
Q ss_pred ecccCChH
Q 002165 175 MSATADIT 182 (957)
Q Consensus 175 mSATld~~ 182 (957)
||||++.+
T Consensus 223 ~SAT~~~~ 230 (249)
T 3ber_A 223 FSATMTKK 230 (249)
T ss_dssp EESSCCHH
T ss_pred EeccCCHH
Confidence 99999754
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=1.5e-17 Score=172.32 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=116.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.++++|.++++.+.+++++++.+|||||||..+...+++.. ..+++++.|++.++.++++.+........+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 57899999999999999999999999999977666665542 2368888999999999988886654322133344
Q ss_pred Eeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 102 YHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 102 y~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
...+... ....+.+|+|+||+.|.+.+..+...+.++++||||||| +..+.++...+.+.+...+++.++++|
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~l~~ 183 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD-KLLSQDFVQIMEDIILTLPKNRQILLY 183 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHSCTTCEEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH-HhHhhCcHHHHHHHHHhCCccceEEEE
Confidence 3333221 224578999999999999988776666799999999999 566666665554444445568999999
Q ss_pred cccCChH
Q 002165 176 SATADIT 182 (957)
Q Consensus 176 SATld~~ 182 (957)
|||++.+
T Consensus 184 SAT~~~~ 190 (206)
T 1vec_A 184 SATFPLS 190 (206)
T ss_dssp ESCCCHH
T ss_pred EeeCCHH
Confidence 9999754
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.76 E-value=4.6e-17 Score=197.90 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=96.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. +|||||+++++|+|+|++++||+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~--- 513 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI--- 513 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE---
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE---
Confidence 369999999999999999999853 577889999999999999999999888 99999999999999999999998
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~ 401 (957)
||.... -.+.|..+|+||+|||||.++|.|+.++++.
T Consensus 514 -----~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 514 -----LDADKE-----GFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp -----TTTTSC-----SGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred -----eCCccc-----CCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 554221 1144778889999999999999999998764
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.76 E-value=9e-18 Score=178.58 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
++++|.++++.+.++++++++||||||||..+...+++. ...+++++.|++.++.++++.+.... ...+..++.
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~ 131 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG-DYMGATCHA 131 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh-hhcCceEEE
Confidence 789999999999999999999999999998877777654 23478899999999999988886543 223333333
Q ss_pred eeeccc------cc-CCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEe
Q 002165 103 HIGHSK------HL-SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (957)
Q Consensus 103 ~v~~~~------~~-~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlm 175 (957)
.++... .. ....+|+|+|||.|++.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.++|+|
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD-EMLSRGFKDQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH-HHHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch-HhhccCcHHHHHHHHHhCCCCCeEEEE
Confidence 322211 11 2348999999999999998776666789999999999 666666655555555455678999999
Q ss_pred cccCChH
Q 002165 176 SATADIT 182 (957)
Q Consensus 176 SATld~~ 182 (957)
|||++.+
T Consensus 211 SAT~~~~ 217 (237)
T 3bor_A 211 SATMPTD 217 (237)
T ss_dssp CSSCCHH
T ss_pred EEecCHH
Confidence 9999754
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.75 E-value=2.3e-17 Score=173.49 Aligned_cols=154 Identities=22% Similarity=0.265 Sum_probs=115.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
.++++|.++++.+.+++++++++|||||||..+...+++. ...+++++.|++.++.++++.+..... ..+..++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF-HMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc-ccCceEE
Confidence 5789999999999999999999999999998766666543 234789999999999999888765432 2233333
Q ss_pred Eeeeccc-----ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 102 YHIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 102 y~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
...+... ....+++|+|+||+.|++.+..+...+.++++||||||| +..+.++...+.+.+...+++.++++||
T Consensus 115 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 115 ACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp EECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHHHHHHHHhCCccCeEEEEE
Confidence 3222211 112348999999999999988776666799999999999 6666666655555555556789999999
Q ss_pred ccCChH
Q 002165 177 ATADIT 182 (957)
Q Consensus 177 ATld~~ 182 (957)
||++.+
T Consensus 194 AT~~~~ 199 (224)
T 1qde_A 194 ATMPND 199 (224)
T ss_dssp SSCCHH
T ss_pred eecCHH
Confidence 999764
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.75 E-value=1.7e-17 Score=173.98 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=116.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCCc---cC
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCE---LG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~-----~~~Iivt~Prrlaa~~va~rva~e~~~~---lg 97 (957)
...+++|.++++.+.+++++++++|||||||..+...+++.. ..+++++.|++.++.++++.+....... .+
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 347899999999999999999999999999987766666542 3478888999999999988776543211 13
Q ss_pred CeeEEeeecc------cccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 98 ~~Vgy~v~~~------~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
..++...+.. .....+.+|+|+|||+|.+.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.+
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 105 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD-LMLDMGFITDVDQIAARMPKDLQ 183 (219)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH-HHHHTTCHHHHHHHHHTSCTTCE
T ss_pred eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch-HHhhhChHHHHHHHHHhCCcccE
Confidence 3333332221 1223468999999999999988776667799999999999 56655665555444444556889
Q ss_pred EEEecccCChH
Q 002165 172 VVLMSATADIT 182 (957)
Q Consensus 172 lIlmSATld~~ 182 (957)
+++||||++.+
T Consensus 184 ~l~~SAT~~~~ 194 (219)
T 1q0u_A 184 MLVFSATIPEK 194 (219)
T ss_dssp EEEEESCCCGG
T ss_pred EEEEecCCCHH
Confidence 99999998654
No 70
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.75 E-value=1.1e-17 Score=178.32 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----------CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
.+++|.++++.+.++++++++||||||||..+..+++.. ...+++++.|++.++.++++.+..... ..+
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR-ACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh-hcC
Confidence 789999999999999999999999999996655554432 234688888999988898777655321 223
Q ss_pred CeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
..++...+... ....+.+|+|+|||+|++.+..+...+.++++||||||| +..+.++...+.+.+...+++.|
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQ 209 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHHHHHHHTTSCSSCE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHHHHHHHHhCCccce
Confidence 33333322211 123458999999999999998777667799999999999 67776776666666555667899
Q ss_pred EEEecccCChH
Q 002165 172 VVLMSATADIT 182 (957)
Q Consensus 172 lIlmSATld~~ 182 (957)
+++||||++.+
T Consensus 210 ~~~~SAT~~~~ 220 (242)
T 3fe2_A 210 TLMWSATWPKE 220 (242)
T ss_dssp EEEEESCCCHH
T ss_pred EEEEEeecCHH
Confidence 99999999754
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=181.65 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---------CCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~ 98 (957)
++++|.++++.+..+++++++||||||||..+...+++. ...+++++.|++.+|.++++.+..... ..+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT-HHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-hcCc
Confidence 899999999999999999999999999996655544431 234688999999999999888876433 3444
Q ss_pred eeEEeeecccc------cCCCCcEEEEcHHHHHHHHHccC-CCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 99 EVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 99 ~Vgy~v~~~~~------~~~~t~Ivv~T~g~Ll~~l~~~~-l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
.++..++.... ...+++|+|+|||+|++.+.... +.+.++++||||||| +..+.++...+.+.+...+++.|
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~q 234 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTRRQ 234 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSSSE
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCCCe
Confidence 45544333221 12458999999999999887543 456689999999999 77777777666555555667889
Q ss_pred EEEecccCChH
Q 002165 172 VVLMSATADIT 182 (957)
Q Consensus 172 lIlmSATld~~ 182 (957)
+|+||||++.+
T Consensus 235 ~l~~SAT~~~~ 245 (262)
T 3ly5_A 235 TMLFSATQTRK 245 (262)
T ss_dssp EEEECSSCCHH
T ss_pred EEEEEecCCHH
Confidence 99999999754
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.75 E-value=2.4e-17 Score=170.94 Aligned_cols=153 Identities=20% Similarity=0.146 Sum_probs=115.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc--------CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~--------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg 97 (957)
-.++++|.++++.+.+++++++.+|||||||..+..++++. ...+++++.|++.++.++++++......
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--- 98 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--- 98 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT---
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc---
Confidence 35789999999999999999999999999998766666553 2347999999999999999988776432
Q ss_pred CeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCce
Q 002165 98 GEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (957)
Q Consensus 98 ~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lk 171 (957)
..++...+... ....+.+|+|+||+.|.+.+..+.+.+.++++||||||| +..+.++...+.+.+...+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~ 177 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD-EMLSMGFEEEVEALLSATPPSRQ 177 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH-HHHHTTCHHHHHHHHHTSCTTSE
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh-HhhccchHHHHHHHHHhCCccCe
Confidence 12222222211 112468999999999999988776667799999999999 56565565555444444566889
Q ss_pred EEEecccCChH
Q 002165 172 VVLMSATADIT 182 (957)
Q Consensus 172 lIlmSATld~~ 182 (957)
+++||||++.+
T Consensus 178 ~i~~SAT~~~~ 188 (207)
T 2gxq_A 178 TLLFSATLPSW 188 (207)
T ss_dssp EEEECSSCCHH
T ss_pred EEEEEEecCHH
Confidence 99999999753
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=180.54 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=115.2
Q ss_pred CchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 002165 27 PVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~lle~~~-----~~Iivt~Prrlaa~~va~rva~e~~~~lg~~ 99 (957)
..+++|.++++.+..+ ++++++||||||||..+...+++... ..++|+.|+|.+|.++++.+........+..
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~ 193 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE
Confidence 4678899999999987 99999999999999877666665422 2688888999999999888766543222344
Q ss_pred eEEeeeccc---ccCCCCcEEEEcHHHHHHHHHc-cCCCcCcceEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEE
Q 002165 100 VGYHIGHSK---HLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 100 Vgy~v~~~~---~~~~~t~Ivv~T~g~Ll~~l~~-~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~~~~~~lklIl 174 (957)
+++.++... ......+|+|+|||+|++.+.. +.+.+.++++||||||| +.++ ..+...+...+...+++.|+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~ 272 (300)
T 3fmo_B 194 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLL 272 (300)
T ss_dssp EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEE
T ss_pred EEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEE
Confidence 555544332 2245678999999999999865 44556799999999999 6665 4555444444444567899999
Q ss_pred ecccCChH
Q 002165 175 MSATADIT 182 (957)
Q Consensus 175 mSATld~~ 182 (957)
+|||++.+
T Consensus 273 ~SAT~~~~ 280 (300)
T 3fmo_B 273 FSATFEDS 280 (300)
T ss_dssp EESCCCHH
T ss_pred EeccCCHH
Confidence 99999754
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.74 E-value=3.3e-17 Score=173.32 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++++.+.+++++++++|||||||.++...+++. ...+++++.|++.++.++++.+........+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 789999999999999999999999999997766655543 224789999999999999988876533222344444
Q ss_pred eeeccc-----ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccccc-HHHHHHHHHHhcCCCceEEEec
Q 002165 103 HIGHSK-----HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 103 ~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d-~ll~~lk~l~~~~~~lklIlmS 176 (957)
..+... ....+.+|+|+|||+|.+.+..+.+.+.++++||||||| +..+.+ +...+.+.+...+++.++++||
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 333221 113468999999999999988776666799999999999 665554 5444433333445578999999
Q ss_pred ccCChHHHHHHHh
Q 002165 177 ATADITKYRDYFR 189 (957)
Q Consensus 177 ATld~~~~~~~f~ 189 (957)
||++.+ +.+++.
T Consensus 206 AT~~~~-~~~~~~ 217 (230)
T 2oxc_A 206 ATYPEF-LANALT 217 (230)
T ss_dssp SCCCHH-HHHHHT
T ss_pred eccCHH-HHHHHH
Confidence 998755 444444
No 75
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.74 E-value=4e-17 Score=173.23 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc---------CCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~---------~~~~Iivt~Prrlaa~~va~rva~e~~~~l 96 (957)
-.++++|.++++.+.+++++++++|||||||+++..++++. ...+++++.|++.++.++++.+.... ...
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~ 124 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG-KNH 124 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-TTS
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-CCC
Confidence 35789999999999999999999999999997766555432 23478888999999999988876543 233
Q ss_pred CCeeEEeeeccc-----ccCCCCcEEEEcHHHHHHHHHcc-CCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCc
Q 002165 97 GGEVGYHIGHSK-----HLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (957)
Q Consensus 97 g~~Vgy~v~~~~-----~~~~~t~Ivv~T~g~Ll~~l~~~-~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~l 170 (957)
+..++...+... ....+.+|+|+||++|++.+... .+.+.++++||||||| +..+.++...+.+.+...+++.
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~ 203 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADTMNAVIENLPKKR 203 (236)
T ss_dssp SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHHHHHHHHTSCTTS
T ss_pred CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHHHHHHHHhCCCCC
Confidence 344444333221 11246899999999999988754 3445689999999999 7777666655555555556688
Q ss_pred eEEEecccCChH
Q 002165 171 RVVLMSATADIT 182 (957)
Q Consensus 171 klIlmSATld~~ 182 (957)
++++||||++.+
T Consensus 204 ~~l~~SAT~~~~ 215 (236)
T 2pl3_A 204 QTLLFSATQTKS 215 (236)
T ss_dssp EEEEEESSCCHH
T ss_pred eEEEEEeeCCHH
Confidence 999999999754
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=4.9e-17 Score=170.51 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~-----~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
.+++|.++++.+.+++++++++|||||||..+...+++. +..+++++.|++.++.++++.+.......-+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 789999999999999999999999999998777766654 223789999999999999888766543211344443
Q ss_pred eeecccc-------cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEccccccccc-ccHHHHHHHHHHhcCCCceEEE
Q 002165 103 HIGHSKH-------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 103 ~v~~~~~-------~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~-~d~ll~~lk~l~~~~~~lklIl 174 (957)
..+.... .....+|+|+||+.|.+.+....+.+.++++||||||| +..+ .++...+.+.+....++.++++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KMLEQLDMRRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH-HHHSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH-HHhcccCcHHHHHHHHHhCCCcCeEEE
Confidence 3332111 12356999999999999988776667799999999999 4444 3454444333334456789999
Q ss_pred ecccCChH
Q 002165 175 MSATADIT 182 (957)
Q Consensus 175 mSATld~~ 182 (957)
||||++.+
T Consensus 196 ~SAT~~~~ 203 (220)
T 1t6n_A 196 FSATLSKE 203 (220)
T ss_dssp EESCCCTT
T ss_pred EEeecCHH
Confidence 99998643
No 77
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.72 E-value=9.6e-17 Score=171.25 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=115.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc------CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~------~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~V 100 (957)
..+++|.++++.+.+++++++.||||||||..+..++++. ...+++++.|++.++.++++.+..... ..|..+
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~ 129 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE-GTGFRI 129 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc-ccCceE
Confidence 4799999999999999999999999999997655555432 223688899999999999888866432 233333
Q ss_pred EEeee-------cccccCCCCcEEEEcHHHHHHHHHcc--CCCcCcceEEEEccccccccc---ccHHHHHHHHHHhc-C
Q 002165 101 GYHIG-------HSKHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVE---SDLVLVCVKQLLLK-K 167 (957)
Q Consensus 101 gy~v~-------~~~~~~~~t~Ivv~T~g~Ll~~l~~~--~l~l~~~~~VIIDEaHER~~~---~d~ll~~lk~l~~~-~ 167 (957)
+...+ .......+.+|+|+|||+|...+... .+.+.++++||||||| +..+ .++...+.+.+... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 130 HMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD-KLFEDGKTGFRDQLASIFLACTS 208 (245)
T ss_dssp ECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH-HHHHHC--CHHHHHHHHHHHCCC
T ss_pred EEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChH-HhcccccccHHHHHHHHHHhcCC
Confidence 32211 12233567899999999999998865 3456699999999999 4444 45666665554443 4
Q ss_pred CCceEEEecccCChHHHHHHHh
Q 002165 168 NDLRVVLMSATADITKYRDYFR 189 (957)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~ 189 (957)
++.++++||||++. .+.++..
T Consensus 209 ~~~~~~~~SAT~~~-~v~~~~~ 229 (245)
T 3dkp_A 209 HKVRRAMFSATFAY-DVEQWCK 229 (245)
T ss_dssp TTCEEEEEESSCCH-HHHHHHH
T ss_pred CCcEEEEEeccCCH-HHHHHHH
Confidence 57899999999964 3444443
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.70 E-value=2.5e-16 Score=168.92 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=111.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc----C----------CCcEEEeccHHHHHHHHHHHHHhhc
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N----------MEPILCTQPRRFAVVAVAKMVAKGR 92 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~----~----------~~~Iivt~Prrlaa~~va~rva~e~ 92 (957)
.++++|.++++.+.+++++++++|||||||..+...+++. . ..+++++.|++.++.++++++....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999997655554432 1 1378888999999999888876543
Q ss_pred CCccCCeeEEeeeccc------ccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-
Q 002165 93 NCELGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL- 165 (957)
Q Consensus 93 ~~~lg~~Vgy~v~~~~------~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~- 165 (957)
. ..+..++...+... ....+.+|+|+||++|++.+....+.+.++++||||||| +..+.++...+.+.+..
T Consensus 125 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~ 202 (253)
T 1wrb_A 125 L-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD-RMLDMGFEPQIRKIIEES 202 (253)
T ss_dssp T-TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHSS
T ss_pred c-cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH-HHHhCchHHHHHHHHhhc
Confidence 2 22223333222211 124568999999999999998776667799999999999 56655555444433332
Q ss_pred -cCC--CceEEEecccCChH
Q 002165 166 -KKN--DLRVVLMSATADIT 182 (957)
Q Consensus 166 -~~~--~lklIlmSATld~~ 182 (957)
... +.++++||||++.+
T Consensus 203 ~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 203 NMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp CCCCGGGCEEEEEESSCCHH
T ss_pred cCCCCCCcEEEEEEEeCCHH
Confidence 222 67999999998754
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=163.39 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=96.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
.+++|||+++++.++.++..|.. .++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--- 108 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ--DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--- 108 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT--TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE---
Confidence 46999999999999999999984 4578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~ 403 (957)
||++.... ...|..+|.||+|||||. .+|.|+.++++.+.
T Consensus 109 -----~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 109 -----FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp -----SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred -----eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 88773221 124778889999999998 68999999997654
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=6.9e-17 Score=161.88 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=94.7
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||+++++.++.++..|.. .++.+..+||+++..+|..+++.|+.+. +|||||+++++|+|+|++++||+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--- 104 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN--DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--- 104 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE---
Confidence 46899999999999999999984 4578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||++.....| .||+|||||. ++|.|+.++++.+..
T Consensus 105 -----~~~p~~~~~~----------~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 105 -----YDLPANKENY----------IHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp -----SSCCSSGGGG----------GGSSCSCC-----CEEEEEEETTTHH
T ss_pred -----eCCCCCHHHH----------HHHhcccccCCCCceEEEEEcchHHH
Confidence 8887755555 9999999999 689999999876543
No 81
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.69 E-value=7.4e-17 Score=161.33 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=98.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||+++++.++.+++.|.. .++.+..+||++++.+|..+++.|+.+. +|||||+++++|+|+|++++||+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--- 109 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD--LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN--- 109 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE---
T ss_pred CCcEEEEECCHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE---
Confidence 46899999999999999999984 3578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||++. |..+|.||+||+||. ++|.|+.++++.+..
T Consensus 110 -----~~~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 110 -----YDLPL----------EKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp -----SSCCS----------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred -----eCCCC----------CHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 88775 556669999999999 689999999976543
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=162.63 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=102.5
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc--------CCCcEEEeccHHHHHHH-HHHHHHhhc
Q 002165 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVA-VAKMVAKGR 92 (957)
Q Consensus 22 ~r~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~--------~~~~Iivt~Prrlaa~~-va~rva~e~ 92 (957)
....++++++|.++++.+.+++++++.+|||+|||+.+..++++. ...+++++.|++.++.+ +.+.+....
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999999999997776666532 13578888888888777 555555443
Q ss_pred CCccCCeeEEeeecccc------cCCCCcEEEEcHHHHHHHHHccC------CCcCcceEEEEcccccccccccHHHHHH
Q 002165 93 NCELGGEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRG------LNALKYKVIILDEVHERSVESDLVLVCV 160 (957)
Q Consensus 93 ~~~lg~~Vgy~v~~~~~------~~~~t~Ivv~T~g~Ll~~l~~~~------l~l~~~~~VIIDEaHER~~~~d~ll~~l 160 (957)
.. +..++...+.... .....+|+|+||+.|.+.+.... +.+.++++||||||| +..+.++...++
T Consensus 108 ~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~ 184 (216)
T 3b6e_A 108 KK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIM 184 (216)
T ss_dssp TT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHH
T ss_pred cc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch-hhccCCcHHHHH
Confidence 32 2223322121111 11248899999999999887542 345689999999999 555555555555
Q ss_pred HHHHhcC--------------CCceEEEeccc
Q 002165 161 KQLLLKK--------------NDLRVVLMSAT 178 (957)
Q Consensus 161 k~l~~~~--------------~~lklIlmSAT 178 (957)
+.++... ++.++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 4443322 67899999998
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.66 E-value=2.3e-16 Score=191.72 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=96.6
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. +|+|||+++++|+|+|+|++||+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~--- 519 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI--- 519 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE---
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE---
Confidence 469999999999999999999853 578889999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCCCCCeEEEeechh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~~~~L~s~~ 401 (957)
||....- .|.|..+|.||+|||||..+|.|+.++++.
T Consensus 520 -----~d~d~~G-----~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 520 -----LDADKEG-----FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp -----TTTTCCT-----TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred -----eCccccc-----CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 5542110 134677889999999999999999998864
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=162.75 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=84.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||++++..++.+++.|.. .++.+..+||+++..+|..+++.|+.+. +|||||+++++|+|+|++++||+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--- 120 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--- 120 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHH--TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE---
T ss_pred CCeEEEEECCHHHHHHHHHHHHH--cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE---
Confidence 46899999999999999999984 4578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||++. |..++.||+|||||. ++|.|+.++++.+..
T Consensus 121 -----~d~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 121 -----FDLPS----------DIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp -----SSCCS----------SHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred -----eCCCC----------CHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 88876 455669999999999 589999999976543
No 85
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=1.8e-16 Score=159.99 Aligned_cols=106 Identities=18% Similarity=0.309 Sum_probs=96.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
.+++|||+++++.++.+++.|.. .++.+..+||++++.+|..+++.|+++. +|||||+++++|+|+|++++||+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~--~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--- 105 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE--QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--- 105 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH--TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE---
T ss_pred CCcEEEEECCHHHHHHHHHHHHh--cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE---
Confidence 46999999999999999999984 3578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
||++. |..+|.||+|||||. ++|.++.++++.
T Consensus 106 -----~d~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 106 -----YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp -----SSCCS----------SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred -----ECCCC----------CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 88876 455669999999999 689999999864
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=160.75 Aligned_cols=106 Identities=20% Similarity=0.343 Sum_probs=94.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||+++++.++.+++.|.. .++.+..+||++++.+|..+++.|+.+. +|||||+++++|+|+|++++||+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--- 128 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL--KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--- 128 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH--HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE---
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE---
Confidence 35899999999999999999974 3578999999999999999999999888 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~ 401 (957)
||++. |..+|.||+|||||. ++|.++.++++.
T Consensus 129 -----~d~p~----------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 -----YDMPE----------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp -----SSCCS----------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred -----eCCCC----------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 88876 445669999999999 689999999864
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.38 E-value=7.8e-17 Score=162.36 Aligned_cols=109 Identities=23% Similarity=0.280 Sum_probs=97.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccccCccCCCeeEEEeCCc
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae~GIdIp~V~~VId~G~ 354 (957)
++++|||+++++.++.+++.|.. .++.+..+||++++.+|..+++.|+.+. +|||||+++++|+|+|++++||+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~--~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--- 104 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE--AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN--- 104 (170)
Confidence 46899999999999999999984 3678999999999999999999999988 99999999999999999999999
Q ss_pred ceeeeecCCCCccccceeecCHHhHHHhcCCCCCC-CCCeEEEeechhhhh
Q 002165 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (957)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~~~~L~s~~~~~ 404 (957)
||++.... ++.||+|||||. ++|.++.+++..+..
T Consensus 105 -----~~~p~~~~----------~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 105 -----FDMPRSGD----------TYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 88876544 459999999999 589999999876544
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.53 E-value=2.5e-13 Score=163.06 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=83.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l--le~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
+-.+++|...+..+..|+ |..+.||+|||..+...+ .......+.|+.|++.+|.+.++.+..... .+|..||..
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~-~lGLsv~~i 154 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR-GLGLSVGVI 154 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH-TTTCCEEEC
T ss_pred CCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH-hcCCeEEEE
Confidence 355899999999999998 999999999995544444 222223466666777777777766554322 345556655
Q ss_pred eeccc----ccCCCCcEEEEcHHHH-HHHHHccC------CCcC---cceEEEEccccc
Q 002165 104 IGHSK----HLSERSKIVFKTAGVL-LDEMRDRG------LNAL---KYKVIILDEVHE 148 (957)
Q Consensus 104 v~~~~----~~~~~t~Ivv~T~g~L-l~~l~~~~------l~l~---~~~~VIIDEaHE 148 (957)
++... ...-.++|+|+|||.| ++.+.++. +.+. ++.++||||||.
T Consensus 155 ~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 155 QHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred eCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 44321 1223589999999999 77777552 3455 789999999994
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.52 E-value=3.3e-14 Score=169.22 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEE--Eccccc
Q 002165 261 IHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVIL--ATNIAE 338 (957)
Q Consensus 261 i~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlV--aTniae 338 (957)
+.+.+..+.... +|.+|||+|++...+.+++.+.. ..+ ..++.. .++..+++.|+.+..|++ +|..+.
T Consensus 372 ~~~~l~~~~~~~---~g~~lvff~S~~~~~~v~~~l~~----~~~-~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~ 441 (540)
T 2vl7_A 372 YSILLKRIYENS---SKSVLVFFPSYEMLESVRIHLSG----IPV-IEENKK--TRHEEVLELMKTGKYLVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHTC---SSEEEEEESCHHHHHHHHTTCTT----SCE-EESTTT--CCHHHHHHHHHTSCCEEEEEC-----
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHhcc----Cce-EecCCC--CcHHHHHHHHhcCCeEEEEEecCcee
Confidence 344444554433 47899999999999999988863 223 345543 346677888877667877 889999
Q ss_pred cCccCCC----eeEEEeCCcceeeeecCC-------------CCccccceeecCHHhHHHhcCCCCCC--CCCeEEEe
Q 002165 339 SSVTIPK----VAYVIDSCRSLQVFWDVN-------------RKIDSAELVWVSQSQAEQRRGRTGRT--CDGQVYRL 397 (957)
Q Consensus 339 ~GIdIp~----V~~VId~G~~k~~~yd~~-------------~~~~~l~~~~iSkas~~QR~GRAGR~--~~G~~~~L 397 (957)
+|||+|+ ++.||..|++-...-|+. .+...+. .+..-....|-+||+-|. ..|..+.+
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 9999998 899998887632211110 0000010 011135568999999997 34655433
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.50 E-value=7.9e-14 Score=152.06 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=106.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEE
Q 002165 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (957)
Q Consensus 26 LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy 102 (957)
+.++++|.++++.+.++++.++++|||+|||.++...+. ..+..+++++.|++.++.+..+++..... ..+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~-~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS-CCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc-cccceEEE
Confidence 678999999999988888899999999999976655444 33445788999999999999988876532 22223333
Q ss_pred eeecccc---cCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEeccc
Q 002165 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSAT 178 (957)
Q Consensus 103 ~v~~~~~---~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSAT 178 (957)
..+.... .....+|+|+|++.+.+... ..+.++++||||||| +..+. .++.++. ..+..++++||||
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH-~~~~~-----~~~~il~~~~~~~~~l~lSAT 261 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECH-LATGK-----SISSIISGLNNCMFKFGLSGS 261 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGG-GCCHH-----HHHHHTTTCTTCCEEEEECSS
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCc-cCCcc-----cHHHHHHHhhcCCeEEEEeCC
Confidence 2222222 12578999999998865422 124489999999999 44432 2233333 2467899999999
Q ss_pred CC--hHHHHHHHhh
Q 002165 179 AD--ITKYRDYFRD 190 (957)
Q Consensus 179 ld--~~~~~~~f~~ 190 (957)
+. .+.+..+|+.
T Consensus 262 p~~~~~~~~~l~~l 275 (282)
T 1rif_A 262 LRDGKANIMQYVGM 275 (282)
T ss_dssp CCTTSTTHHHHHHH
T ss_pred CCCcchHHHHHHHh
Confidence 73 2344455543
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.43 E-value=7.8e-13 Score=140.47 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=102.1
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEe
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~ 103 (957)
....++++|.++++.+.++++++++||||+|||.++..++... ..+++++.|++.++.+..+.+.. ++.. .++..
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~~~ 164 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF 164 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGG-GCGG---GEEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eEEEE
Confidence 3467899999999999999999999999999998887777665 35677777888888888887766 4432 04433
Q ss_pred eecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 104 v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
.+.. ....+|+|+|++.+.+....- ..++++||||||| +..+..+ +.+....+..++++||||+.
T Consensus 165 ~g~~---~~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH-~l~~~~~-----~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 165 SGRI---KELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVH-HLPAESY-----VQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SSSC---BCCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSS-CCCTTTH-----HHHHHTCCCSEEEEEEESCC
T ss_pred eCCC---CCcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCc-cCCChHH-----HHHHHhccCCEEEEEecCCC
Confidence 2222 246799999999988765421 1268999999999 4444332 23444445778999999975
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.36 E-value=1.5e-10 Score=138.18 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcc-cCCceEEEEc-
Q 002165 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILAT- 334 (957)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f-~~~rkVlVaT- 334 (957)
..+.+.+.+..+.... +|.+|||+|+....+.+++.+ +..+..=..+++..+. .+.| +++.-|+++|
T Consensus 377 ~~~~l~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~~-----~~~v~~q~~~~~~~~~---~~~~~~~~~~vl~~v~ 445 (551)
T 3crv_A 377 MWKRYADYLLKIYFQA---KANVLVVFPSYEIMDRVMSRI-----SLPKYVESEDSSVEDL---YSAISANNKVLIGSVG 445 (551)
T ss_dssp HHHHHHHHHHHHHHHC---SSEEEEEESCHHHHHHHHTTC-----CSSEEECCSSCCHHHH---HHHTTSSSSCEEEEES
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEecCHHHHHHHHHhc-----CCcEEEcCCCCCHHHH---HHHHHhcCCeEEEEEe
Confidence 3444555555555544 469999999999999988632 2344443345565544 4445 3445899998
Q ss_pred -cccccCccCC-----CeeEEEeCCcceeeeecCC-----------CCcccc---ceeecCHHhHHHhcCCCCCCCC--C
Q 002165 335 -NIAESSVTIP-----KVAYVIDSCRSLQVFWDVN-----------RKIDSA---ELVWVSQSQAEQRRGRTGRTCD--G 392 (957)
Q Consensus 335 -niae~GIdIp-----~V~~VId~G~~k~~~yd~~-----------~~~~~l---~~~~iSkas~~QR~GRAGR~~~--G 392 (957)
.....|||+| ..+.||-.|++-... |+. .+.+.+ -..| .--...|-+||+=|... |
T Consensus 446 gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G 523 (551)
T 3crv_A 446 KGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKC 523 (551)
T ss_dssp SCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEE
T ss_pred cceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccE
Confidence 6899999999 377888778754332 321 111011 0112 34456799999999843 5
Q ss_pred eEEE
Q 002165 393 QVYR 396 (957)
Q Consensus 393 ~~~~ 396 (957)
..+.
T Consensus 524 ~v~l 527 (551)
T 3crv_A 524 NVWL 527 (551)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 93
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.27 E-value=2.5e-12 Score=115.84 Aligned_cols=51 Identities=41% Similarity=1.022 Sum_probs=48.0
Q ss_pred CccccccccccccccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
++++++|+||++|.|++|++|+|+|+ ..+|++|.+.|.|++|++|+|+|+.
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~----~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG----DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS----SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC----CCcCcCcccCCcCCCCCCCcccCCC
Confidence 46889999999999999999999998 7889999779999999999999987
No 94
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5e-12 Score=109.02 Aligned_cols=56 Identities=27% Similarity=0.681 Sum_probs=48.4
Q ss_pred CCccccccccccccccCCCCCCCCCcCCCC-cccccccccccccCCCCCCCCCCCCCC
Q 002165 733 TPGEAPLCVYFINGSCNRGTGCPFSHSLQA-KRPACKFFYSLQGCRNGDSCIFSHDLG 789 (957)
Q Consensus 733 ~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~-~~~~C~~f~~~g~C~~g~~C~~~H~~~ 789 (957)
...++++|+||++|.|++|++|+|+|+... +.++|+||...|.|. |++|+|.|...
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCc
Confidence 456889999999999999999999999754 466899994449999 89999999883
No 95
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.20 E-value=4.6e-12 Score=107.36 Aligned_cols=56 Identities=27% Similarity=0.666 Sum_probs=48.0
Q ss_pred CCccccccccccccccCCCCCCCCCcCCC-CcccccccccccccCCCCCCCCCCCCCC
Q 002165 733 TPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDLG 789 (957)
Q Consensus 733 ~~~~~~~C~~f~~G~C~~G~~C~f~H~~~-~~~~~C~~f~~~g~C~~g~~C~~~H~~~ 789 (957)
...+.++|+||++|.|++|++|+|+|+.. .+.++|+||...|.|.+ ++|+|.|...
T Consensus 12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp SCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred CCCcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCc
Confidence 35678899999999999999999999975 35678999933499999 8899999873
No 96
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.17 E-value=5.3e-11 Score=128.78 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCC-c-e-EEEEcc
Q 002165 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-K-VILATN 335 (957)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~-r-k-VlVaTn 335 (957)
..+.+++..+... +.++|||+.....++.+...|... .++.+..+||+++..+|..+++.|+.+ . + +|+||+
T Consensus 99 ~~L~~ll~~~~~~----~~kvlIFs~~~~~~~~l~~~L~~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 99 IRTMEIIEEALDE----GDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp HHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHH-HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHHHhC----CCeEEEEeccHHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3344455444322 469999999999999999998632 146688899999999999999999876 4 4 799999
Q ss_pred ccccCccCCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCCCCC---CCeEEEeechhhh
Q 002165 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF 403 (957)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~~~~L~s~~~~ 403 (957)
++++|||++++++||+ ||++.+...+ .||.||++|.+ +-.+|+|+++...
T Consensus 174 ~~g~Glnl~~a~~VI~--------~d~~wnp~~~----------~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 174 AGGFGINLTSANRVIH--------FDRWWNPAVE----------DQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TTCCCCCCTTCSEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTSH
T ss_pred hhcCCcCcccCCEEEE--------ECCCCChhHH----------HHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999 9999988877 99999999983 4567888886533
No 97
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.14 E-value=1.7e-11 Score=106.18 Aligned_cols=57 Identities=30% Similarity=0.649 Sum_probs=26.3
Q ss_pred CCCcccccccccc-ccccCCCCCCCCCcCCCC----------cccccccccccccCCCCCCCCCCCCC
Q 002165 732 ETPGEAPLCVYFI-NGSCNRGTGCPFSHSLQA----------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 732 ~~~~~~~~C~~f~-~G~C~~G~~C~f~H~~~~----------~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
...+++.+|++|+ +|.|++|++|+|+|+... ++.+|++|...|.|++|++|+|.|..
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 3456889999996 899999999999999732 25689988789999999999999986
No 98
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.10 E-value=2.1e-11 Score=102.98 Aligned_cols=53 Identities=25% Similarity=0.621 Sum_probs=45.7
Q ss_pred CccccccccccccccCCCCC-CCCCcCCC--------CcccccccccccccCCCCCCCCCCCCC
Q 002165 734 PGEAPLCVYFINGSCNRGTG-CPFSHSLQ--------AKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~-C~f~H~~~--------~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
..+.++|++|++|.|++|++ |+|+|+.. .+.++|++| ++|.|.+| .|+|.|..
T Consensus 3 ~~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~f-lkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 3 TDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDY-IKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp -CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHH-HTTCCCCT-TCCSBCCC
T ss_pred cccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceecccc-CcCCCCCC-CcCeeCCH
Confidence 45778999999999999994 99999752 346789999 88999999 79999986
No 99
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.9e-11 Score=109.83 Aligned_cols=61 Identities=23% Similarity=0.506 Sum_probs=52.1
Q ss_pred CCCCCCCCCccccccccccccccCCCC-CCCCCcCCC--------CcccccccccccccCCCCCCCCCCCCC
Q 002165 726 KAVNGSETPGEAPLCVYFINGSCNRGT-GCPFSHSLQ--------AKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 726 ~~~~~~~~~~~~~~C~~f~~G~C~~G~-~C~f~H~~~--------~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
........+.+.++|++|++|.|++|+ .|+|+|+.. .+.++|++| ++|.|.+| +|+|.|..
T Consensus 9 ~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~f-lkG~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 9 TATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDY-IKGRCMRE-KCKYFHPP 78 (98)
T ss_dssp SCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHH-HHTCCCCT-TCCSBCCC
T ss_pred cccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhh-ccCCCCCC-CcCccCCh
Confidence 344455567889999999999999999 799999973 356789999 88999999 79999987
No 100
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.92 E-value=4.8e-08 Score=117.69 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEcc--
Q 002165 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN-- 335 (957)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTn-- 335 (957)
+.+.+.+..+.... +|.+|||+|+....+.+++.+.. .+.. ...+++..++..+++.|+ ++ -|+++|.
T Consensus 434 ~~~~~~i~~l~~~~---~g~~lvlF~Sy~~l~~v~~~l~~--~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~g 504 (620)
T 4a15_A 434 DRMATVIEDIILKV---KKNTIVYFPSYSLMDRVENRVSF--EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGG 504 (620)
T ss_dssp HHHHHHHHHHHHHH---CSCEEEEESCHHHHHHHTSSCCS--CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTS
T ss_pred HHHHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHHHh--cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecC
Confidence 33444455555443 46899999999999999888862 1222 455566667888889898 55 9999974
Q ss_pred ccccCccCCC--eeEEEeCCcceeeeecCC-------------CCcc-ccceeecCHHhHHHhcCCCCCCC--CCeEEEe
Q 002165 336 IAESSVTIPK--VAYVIDSCRSLQVFWDVN-------------RKID-SAELVWVSQSQAEQRRGRTGRTC--DGQVYRL 397 (957)
Q Consensus 336 iae~GIdIp~--V~~VId~G~~k~~~yd~~-------------~~~~-~l~~~~iSkas~~QR~GRAGR~~--~G~~~~L 397 (957)
....|||+|+ .+.||-.|++-... |+. .+.. .| ..| .--...|-+||+=|.. .|..+.+
T Consensus 505 sf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y-~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 505 RLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSV-VYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp CC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHT-HHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred ceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHh-HHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 8999999995 56777778753211 110 0000 01 011 2234579999999973 4655443
No 101
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.89 E-value=6e-10 Score=96.71 Aligned_cols=52 Identities=25% Similarity=0.502 Sum_probs=46.0
Q ss_pred ccccccccccccccCCCC-CCCCCcCCC------CcccccccccccccCCCCCCCCCCCCC
Q 002165 735 GEAPLCVYFINGSCNRGT-GCPFSHSLQ------AKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~-~C~f~H~~~------~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
.+.++|++|++|.|.+|+ .|+|+|+.. .+.++|.+| ++|.|.+| .|+|.|+.
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~df-lkG~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDS-LKGRCSRE-NCKYLHPP 65 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHH-HTTCCCCS-SCSSCCCC
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHh-hhccccCC-CcceeCCh
Confidence 477899999999999997 999999963 236789999 99999999 69999987
No 102
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.88 E-value=9.2e-10 Score=96.54 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=49.3
Q ss_pred CCCCCCccccccccccccccCCCC-CCCCCcCCCC------cccccccccccccCCCCCCCCCCCCC
Q 002165 729 NGSETPGEAPLCVYFINGSCNRGT-GCPFSHSLQA------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 729 ~~~~~~~~~~~C~~f~~G~C~~G~-~C~f~H~~~~------~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
.......+.++|++|++|.|++|+ .|+|+|+... +.++|..| ++|.|.++ .|+|.|+.
T Consensus 9 ~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~df-lkG~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 9 VRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDS-LKGRCSRE-NCKYLHPP 73 (89)
T ss_dssp CCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHH-HHTCCCCT-TCCSBCCC
T ss_pred ccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhh-hhCcCCCC-CcceecCH
Confidence 333444678999999999999998 9999999653 56789999 89999999 59999987
No 103
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.04 E-value=1e-05 Score=97.19 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH--Hh----cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC--ee
Q 002165 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG--EV 100 (957)
Q Consensus 29 ~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l--le----~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~--~V 100 (957)
.+.|.+++..+..+++++|+|++||||||.+...+ +. ....+|+++.|+..+|..+.+.+..... .++. ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCCCCHHH
Confidence 57899999999999999999999999997654432 22 1223788888988888887766543110 1110 00
Q ss_pred EEeeecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 101 gy~v~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
...+... ...-.+++-.+++.. .+.........+++||||||+ +++.+.+..+++. .+.+.|+|++.=.
T Consensus 230 ~~~~~~~--~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 230 KKRIPED--ASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp CCSCSCC--CBTTTSCC-------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred Hhccchh--hhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechh--hCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 0000000 000011222223221 011111122378999999999 5555444444432 3556788886544
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.02 E-value=1.2e-05 Score=93.52 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHHHc-----CCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHH
Q 002165 27 PVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMV 88 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~-----~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~rv 88 (957)
.+.+-|.+++..+.. ...++|.|+.|||||+.+-.. +...+...|+++.|+..||..+.+++
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 368899999997653 249999999999999765443 34445557888888888887777665
No 105
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=68.64 Aligned_cols=59 Identities=20% Similarity=0.466 Sum_probs=45.7
Q ss_pred hhhhccccCCCCCCCCCCCCC-ccccccccccc-cccCCCCCCCCCcCCC-Ccccccccccccc
Q 002165 714 VQYVEDVSGNQDKAVNGSETP-GEAPLCVYFIN-GSCNRGTGCPFSHSLQ-AKRPACKFFYSLQ 774 (957)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~-~~~~~C~~f~~-G~C~~G~~C~f~H~~~-~~~~~C~~f~~~g 774 (957)
+.+..+.|..++.+.+.+... .+..+|+||++ |.|. |+.|+|+|... .+.++|.+| ..|
T Consensus 14 ~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~C~~f-~~g 75 (77)
T 2d9n_A 14 KHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWS-GPS 75 (77)
T ss_dssp HHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSSSSCC-TTT
T ss_pred HhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccccCCCCccc-ccC
Confidence 445667888877777777543 45678999998 9999 89999999863 457899999 544
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.62 E-value=7.8e-05 Score=88.80 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHH
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMV 88 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt~Prrlaa~~va~rv 88 (957)
...+.+.|.+++..+..+++++|.|+.|+||||.+-..+. .....+|+++.|+..+|..+.+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 4567899999999999999999999999999977655432 223356778888877777665543
No 107
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.55 E-value=0.00013 Score=88.51 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHh
Q 002165 27 PVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~-~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
.+.+.|.+++..++.. ...+|.||.|||||+.+...+... ...+|+++.|+-.|+..+.+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4789999999987754 578999999999997666555432 235799999999999999999865
No 108
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.30 E-value=0.00061 Score=82.10 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHh
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+. .....+|+++.|+..|+..+.+++..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 36899999999988888999999999999977655543 22446899999999999999998865
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.0014 Score=68.22 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=62.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
..+..++++|++|+||||.+.+.+... ...++++.+|..- .+ .. ..+....|.. ...+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d------~r-~~---~~i~srlG~~---------~~~~~ 70 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID------TR-SI---RNIQSRTGTS---------LPSVE 70 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------GG-GC---SSCCCCCCCS---------SCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC------ch-HH---HHHHHhcCCC---------ccccc
Confidence 356789999999999999988887654 2346777766210 00 00 0111111100 11223
Q ss_pred EEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecc
Q 002165 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (957)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSA 177 (957)
+.+..-++..+... ....++++|||||++ .+..+ ....++.+... ++.+|+..-
T Consensus 71 ~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ--~l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 71 VESAPEILNYIMSN-SFNDETKVIGIDEVQ--FFDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp ESSTHHHHHHHHST-TSCTTCCEEEECSGG--GSCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred cCCHHHHHHHHHHH-hhCCCCCEEEEecCc--cCcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 45555666666542 122368999999999 34444 33344554443 566666554
No 110
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.10 E-value=0.00017 Score=60.74 Aligned_cols=32 Identities=34% Similarity=0.651 Sum_probs=27.0
Q ss_pred CcCCCCcccccccccccccCCCCCCCCCCCCCC
Q 002165 757 SHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLG 789 (957)
Q Consensus 757 ~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~ 789 (957)
+|+...+..+|+|| +.|.|++|++|+|+|+.+
T Consensus 9 ~~~~~~k~~vCk~f-l~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 9 SHMSGEKTVVCKHW-LRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CSSSCCCCSBCHHH-HTTCCCCGGGSSSBCSCC
T ss_pred ccCCCCcCeeCHHH-hcCCCCCCCCCCCccccc
Confidence 45556678899999 779999999999999973
No 111
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.03 E-value=0.0003 Score=63.11 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=28.1
Q ss_pred CCCcCCC--CcccccccccccccCCCCCCCCCCCC
Q 002165 755 PFSHSLQ--AKRPACKFFYSLQGCRNGDSCIFSHD 787 (957)
Q Consensus 755 ~f~H~~~--~~~~~C~~f~~~g~C~~g~~C~~~H~ 787 (957)
.|+|+.. .++.+|+|| ..|.|++|++|+|+|+
T Consensus 2 ~~sH~~~~~~k~~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCccc-ccCcCCCCCCCCCCCC
Confidence 4889874 467899999 7999999999999998
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.89 E-value=0.0017 Score=65.49 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=27.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
.++..+++|+.|+||||.+.+.+... ...++++.+|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46789999999999999887776543 22456666664
No 113
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.89 E-value=0.00051 Score=57.58 Aligned_cols=45 Identities=18% Similarity=0.488 Sum_probs=33.5
Q ss_pred hhhccccCCCC-CCCCCCC--------CCccccccccccccccCCCCCCCCCcCC
Q 002165 715 QYVEDVSGNQD-KAVNGSE--------TPGEAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 715 ~~~~~~~~~~~-~~~~~~~--------~~~~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
.+..|.|..++ .+.+.+. .+.++.+|++|++|.|.+| +|+|.|..
T Consensus 11 ~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 11 EYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp HHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred HHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 34456676665 3554443 2467899999999999999 99999984
No 114
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00063 Score=55.79 Aligned_cols=26 Identities=35% Similarity=0.922 Sum_probs=22.3
Q ss_pred ccccccccccccccCCCCCCCCCcCC
Q 002165 735 GEAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
.+..+|+.|.+|.|.+|++|.|+|..
T Consensus 18 ~k~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 18 GYFSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SCCSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred CCcccCcccCcCCCCCCCccCCcCCH
Confidence 45588999988999999999999985
No 115
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.80 E-value=0.00056 Score=69.19 Aligned_cols=43 Identities=26% Similarity=0.658 Sum_probs=39.2
Q ss_pred cccccccccc-----cccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q 002165 736 EAPLCVYFIN-----GSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 736 ~~~~C~~f~~-----G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
=+++|.+| + |.|+.+++|...|- |++| ..|.|+| .+|+-+|+.
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLHI-------C~~F-l~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLHI-------CEHF-TRGNCSY-LNCLRSHNL 197 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBCS-------CHHH-HTTCCCC-SSCSSCCCT
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCcceec-------cchh-hcCCcCC-CCccCccCc
Confidence 35899999 6 58999999999996 9999 9999999 689999998
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0061 Score=66.70 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=32.2
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCCh
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld~ 181 (957)
..-+|||||+| +....+++..+++........+-+|+.++|++.
T Consensus 132 ~~~ii~lDE~d-~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPE-NLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCS-SSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHH-HhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 56799999999 555778887777654334456677888999753
No 117
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.72 E-value=0.00093 Score=50.39 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=22.9
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCC
Q 002165 763 KRPACKFFYSLQGCRNGDSCIFSHDLGQPV 792 (957)
Q Consensus 763 ~~~~C~~f~~~g~C~~g~~C~~~H~~~~~~ 792 (957)
.+.+|+-|...|.|++|.+|+++|+.+-+.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCCC
Confidence 466788888888888888888888875543
No 118
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.71 E-value=0.073 Score=64.04 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhc-CC--CcEEEeccHHHHHHHHHHHHHhhcCC
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNC 94 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~-~~--~~Iivt~Prrlaa~~va~rva~e~~~ 94 (957)
.+.+.|.+++.. .+..++|.|+.|||||+.+... +++. +. .+|+++.+++.+|..+.+|+....+.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 367889999873 3578999999999999766543 3433 22 47888888889999999999876553
No 119
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.66 E-value=0.0039 Score=63.16 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=28.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
.++..++.|+.||||||.+.+.+... ...++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 35688999999999999888877654 33467777774
No 120
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.63 E-value=0.00088 Score=67.81 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=40.8
Q ss_pred ccccccccccccC----CCCCCCCCcCCCCc-------------------------------ccccccccc----cccCC
Q 002165 737 APLCVYFINGSCN----RGTGCPFSHSLQAK-------------------------------RPACKFFYS----LQGCR 777 (957)
Q Consensus 737 ~~~C~~f~~G~C~----~G~~C~f~H~~~~~-------------------------------~~~C~~f~~----~g~C~ 777 (957)
--+||||+-|+|+ .|..|+|||+.... ..+|.+| . .|.|+
T Consensus 89 LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~ 167 (229)
T 3u9g_A 89 LHLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCG 167 (229)
T ss_dssp BCCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCS
T ss_pred eeechhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCC
Confidence 3579999999993 46789999998221 3479999 4 26899
Q ss_pred CCCCCCCCCCC
Q 002165 778 NGDSCIFSHDL 788 (957)
Q Consensus 778 ~g~~C~~~H~~ 788 (957)
++++|...|--
T Consensus 168 ~~~~C~kLHIC 178 (229)
T 3u9g_A 168 QPQPCERLHIC 178 (229)
T ss_dssp SSSCCCSBCSC
T ss_pred CCCCCcceecc
Confidence 99999999965
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.55 E-value=0.0033 Score=62.65 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHH---------cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 29 MSLREKIVEKVL---------ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 29 ~~~Q~~il~~l~---------~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+.|+++++.+. .++.+++.||+|+||||.+-.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 566777777664 46899999999999998765543
No 122
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.53 E-value=0.031 Score=62.69 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=87.1
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHh----cCCCcEEEeccHHHHHHHHHHHHHhhc---CCcc
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVAKGR---NCEL 96 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle----~~~~~Iivt~Prrlaa~~va~rva~e~---~~~l 96 (957)
..+.+.++|..++..+...+.+++..+-+.|||+.+...++. .....|+++.|++-.|..+..++.... ...+
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 346789999999998877788999999999999765554432 233478888888877776655554322 1111
Q ss_pred CCeeEEeeecccccCCCCcEEEEc--HHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceE-E
Q 002165 97 GGEVGYHIGHSKHLSERSKIVFKT--AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV-V 173 (957)
Q Consensus 97 g~~Vgy~v~~~~~~~~~t~Ivv~T--~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lkl-I 173 (957)
...+...-...-....+..|.+.+ ++.+ + + .+++++|+||+|.-.-..+++. .++..+..+++.++ +
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~sl----r-G----~~~~~viiDE~a~~~~~~el~~-al~~~ls~~~~~kiii 309 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAV----R-G----NSFAMIYIEDCAFIPNFHDSWL-AIQPVISSGRRSKIII 309 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHH----H-T----SCCSEEEEESGGGSTTHHHHHH-HHHHHHHSTTCCEEEE
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCc----c-C----CCCCEEEechhhhcCCCHHHHH-HHHHHhhcCCCCcEEE
Confidence 111100000111112345555554 3322 1 1 2678999999995221123333 33444444344444 4
Q ss_pred EecccCChHHHHHHHhh
Q 002165 174 LMSATADITKYRDYFRD 190 (957)
Q Consensus 174 lmSATld~~~~~~~f~~ 190 (957)
+.|++.. ..+.+.+..
T Consensus 310 iSTP~g~-n~fy~l~~~ 325 (385)
T 2o0j_A 310 TTTPNGL-NHFYDIWTA 325 (385)
T ss_dssp EECCCSS-SHHHHHHHH
T ss_pred EeCCCCc-hhHHHHHHH
Confidence 4455544 455555543
No 123
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.38 E-value=0.0017 Score=55.45 Aligned_cols=31 Identities=32% Similarity=0.719 Sum_probs=26.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCC
Q 002165 761 QAKRPACKFFYSLQGCRNGDSCIFSHDLGQP 791 (957)
Q Consensus 761 ~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~~ 791 (957)
..++.+|++|...|.|++|++|+|+|+....
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 39 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGEL 39 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence 4567899999779999999999999988443
No 124
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.33 E-value=0.00061 Score=58.02 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCC
Q 002165 735 GEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHD 787 (957)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~ 787 (957)
+..+.||||.. |++ ..|+|.|.. ...+|+|+ ..|++-+ |.|.|+
T Consensus 7 ~~~e~CKf~~~--Ctn-~~C~f~Hp~--~~~~Cr~g---~~C~~~~-C~f~HP 50 (80)
T 2lhn_A 7 KSLEQCKFGTH--CTN-KRCKYRHAR--SHIMCREG---ANCTRID-CLFGHP 50 (80)
Confidence 44566888754 777 778888862 23467777 6777744 777774
No 125
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.00086 Score=59.99 Aligned_cols=26 Identities=27% Similarity=0.738 Sum_probs=23.7
Q ss_pred CccccccccccccccCCCCCCCCCcCC
Q 002165 734 PGEAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
+.+..+|++|++|.|.+| +|+|.|..
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~ 78 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPP 78 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCC
T ss_pred CCccccchhhccCCCCCC-CcCccCCh
Confidence 467889999999999999 89999985
No 126
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.30 E-value=0.0062 Score=69.34 Aligned_cols=108 Identities=20% Similarity=0.169 Sum_probs=66.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEEcHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAG 122 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~T~g 122 (957)
+..+|.|+.|||||+.+-..+.. ..++++.|++.++..+.+++... |. ...+...+.|-+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~---~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~~~~V~T~d 221 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF---EEDLILVPGRQAAEMIRRRANAS-----GI------------IVATKDNVRTVD 221 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT---TTCEEEESCHHHHHHHHHHHTTT-----SC------------CCCCTTTEEEHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc---CCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccccceEEEeH
Confidence 47899999999999988665532 45666677777777777766331 11 011234477877
Q ss_pred HHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 123 VLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
.++- .........+++|||||+- +++.+.+..++..+ +.-++|++.-.
T Consensus 222 sfL~--~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~~----~~~~vilvGD~ 269 (446)
T 3vkw_A 222 SFLM--NYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEMS----LCDIAYVYGDT 269 (446)
T ss_dssp HHHH--TTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHHT----TCSEEEEEECT
T ss_pred Hhhc--CCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHhC----CCCEEEEecCc
Confidence 6542 2222222358999999997 55555555544432 22566665544
No 127
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.30 E-value=0.0018 Score=56.64 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=33.8
Q ss_pred CCCCCCCCcCCCCcccccccccccccCCCCC-CCCCCCCCC
Q 002165 750 RGTGCPFSHSLQAKRPACKFFYSLQGCRNGD-SCIFSHDLG 789 (957)
Q Consensus 750 ~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~-~C~~~H~~~ 789 (957)
.|..+.+.|+...+..+|+.| ++|.|.+|+ .|+|+|+..
T Consensus 3 ~~~~~~~~~~~~~~~~VCrdF-lrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 3 SGSSGPVRDTKWLTLEVCRQF-QRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp CCCCSCCCSCSSSEECBCHHH-HHTCCCCCTTTSSSBCCCS
T ss_pred ccccccccCCCcchhhhchHH-hcCCCCCCCCCCCCcCCCc
Confidence 467888888876778899999 789999998 999999983
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.27 E-value=0.012 Score=59.60 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++|.||+|+|||+.+-.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999998654443
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.014 Score=55.97 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHH
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKTt~l 59 (957)
.+.+-.+...+..++|.||+|+|||+..
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHH
Confidence 3333333346678999999999999744
No 130
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.14 E-value=0.056 Score=64.48 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=85.7
Q ss_pred CCCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCCc---c
Q 002165 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCE---L 96 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt~Prrlaa~~va~rva~e~~~~---l 96 (957)
..+.+.++|..++..+-..+.+++.++-|+|||+.+..+++ ......|+++.|++-.|..+...+....... +
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 34678999999999886778899999999999976654433 2233478888888888777776665543221 1
Q ss_pred CCeeEEeeecccccCCCCcEEEEc--HHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEE
Q 002165 97 GGEVGYHIGHSKHLSERSKIVFKT--AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (957)
Q Consensus 97 g~~Vgy~v~~~~~~~~~t~Ivv~T--~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIl 174 (957)
.......-...-....+..|.+.+ ++.+ .. .+.+++|+||+|+-.-..++.. .+...+..+++.++++
T Consensus 240 ~~~~~~~~~~~i~~~nGs~i~~~s~~~~~l----rG-----~~~~~~iiDE~~~~~~~~~l~~-~~~~~l~~~~~~~ii~ 309 (592)
T 3cpe_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAV----RG-----NSFAMIYIEDCAFIPNFHDSWL-AIQPVISSGRRSKIII 309 (592)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECCHHHH----HH-----SCCSEEEEETGGGCTTHHHHHH-HHHHHHSSSSCCEEEE
T ss_pred ccccccCCccEEEecCCCEEEEEeCCCCCc----cC-----CCcceEEEehhccCCchhHHHH-HHHHHhccCCCceEEE
Confidence 111110000111112345555543 3322 11 1578999999995321113333 3333333333445444
Q ss_pred e-cccCChHHHHHHHh
Q 002165 175 M-SATADITKYRDYFR 189 (957)
Q Consensus 175 m-SATld~~~~~~~f~ 189 (957)
. +++.. ..+.+.+.
T Consensus 310 isTP~~~-~~~y~~~~ 324 (592)
T 3cpe_A 310 TTTPNGL-NHFYDIWT 324 (592)
T ss_dssp EECCCTT-SHHHHHHH
T ss_pred EeCCCCc-hhHHHHHH
Confidence 3 33333 34444443
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.029 Score=57.53 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 31 LREKIVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 31 ~Q~~il~~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
..+.+...+..++ .++|.||+|+|||+.+-.+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345555566655 79999999999998765554
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.017 Score=58.53 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHH
Q 002165 31 LREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 31 ~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~ 62 (957)
..+++...+..+ ..+++.||+|+|||+.+-.+
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHH
Confidence 344455555554 35999999999999865433
No 133
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.01 E-value=0.018 Score=68.76 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeEEee
Q 002165 27 PVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~--~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v 104 (957)
-.+.-|.++++.+.+ ....+|+|+-|.|||+.+-..+.... ..++||.|+..++..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~~~~vtAP~~~a~~~l~~~~~~-------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-GRAIVTAPAKASTDVLAQFAGE-------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-SCEEEECSSCCSCHHHHHHHGG--------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-hCcEEECCCHHHHHHHHHHhhC--------------
Confidence 457889999999876 55789999999999988777766543 4679999988877766554321
Q ss_pred ecccccCCCCcEEEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 105 GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 105 ~~~~~~~~~t~Ivv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
.|-|..|.-++. ...+.++||||||= ++... +++.++.. ...|+||.|++
T Consensus 240 ----------~i~~~~Pd~~~~-------~~~~~dlliVDEAA--aIp~p----ll~~ll~~---~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA-------SDEQADWLVVDEAA--AIPAP----LLHQLVSR---FPRTLLTTTVQ 289 (671)
T ss_dssp ----------GCCBCCHHHHHH-------SCCCCSEEEEETGG--GSCHH----HHHHHHTT---SSEEEEEEEBS
T ss_pred ----------CeEEeCchhhhh-------CcccCCEEEEEchh--cCCHH----HHHHHHhh---CCeEEEEecCC
Confidence 144556765442 12368999999997 45544 44555543 24688888964
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.013 Score=65.52 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcccc
Q 002165 446 DPPYPEVVGDALDLLDHKRALQK 468 (957)
Q Consensus 446 ~pP~~~~i~~al~~L~~lgal~~ 468 (957)
.|.+...+..+++.|...|.|..
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCeEE
Confidence 45677888999999999999976
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.94 E-value=0.01 Score=66.26 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCcccc
Q 002165 445 LDPPYPEVVGDALDLLDHKRALQK 468 (957)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (957)
.+|.....+..+++.|..+|.+..
T Consensus 327 ~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 327 LEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEE
Confidence 356667888899999999998876
No 136
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.93 E-value=0.0034 Score=51.52 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=25.3
Q ss_pred CCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q 002165 755 PFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 755 ~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
.|.++ ..+..+|+.| ..|.|.+|++|.|+|..
T Consensus 12 ~~R~P-~~k~~LC~~~-~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 12 QHRFP-TGYFSICDRY-MNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCCCC-CSCCSBCHHH-HHSCCSSCSSCSSBSSH
T ss_pred cccCC-CCCcccCccc-CcCCCCCCCccCCcCCH
Confidence 34443 2345789999 88999999999999975
No 137
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.89 E-value=0.0046 Score=53.41 Aligned_cols=46 Identities=17% Similarity=0.439 Sum_probs=32.9
Q ss_pred hhhhccccCCCC-CCCCCCCC------CccccccccccccccCCCCCCCCCcCC
Q 002165 714 VQYVEDVSGNQD-KAVNGSET------PGEAPLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 714 ~~~~~~~~~~~~-~~~~~~~~------~~~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
+.+..|.|..++ .+.+.+.. +.+..+|.+|++|.|.+| +|+|.|+.
T Consensus 13 r~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 13 REFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPP 65 (83)
T ss_dssp TTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCC
T ss_pred HHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCCh
Confidence 344556776664 44444432 245789999999999998 89999985
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.78 E-value=0.014 Score=60.27 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.++.++|.||+|+|||+.+-.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3678999999999999866443
No 139
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.77 E-value=0.015 Score=55.60 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHH
Q 002165 30 SLREKIVEKVLENRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 30 ~~Q~~il~~l~~~~~vII~a~TGSGKTt~l 59 (957)
..++.+-.....+..+++.||+|+|||+..
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 344444444456778999999999999743
No 140
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.76 E-value=0.027 Score=58.34 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
.++..+++|+-||||||.+.+.+... ...++++.+|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46788999999999999888887654 23478888774
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.028 Score=62.46 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll 64 (957)
++.++|.||+|+|||+.+-.+.-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999987765543
No 142
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.62 E-value=0.011 Score=60.51 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
++..+++|+-||||||.+.+.+... ...++++.+|.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5678899999999999888887643 23467777774
No 143
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.62 E-value=0.019 Score=62.64 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~ 61 (957)
++++++.||+|+|||+.+-.
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 58999999999999965433
No 144
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.59 E-value=0.0068 Score=45.76 Aligned_cols=28 Identities=36% Similarity=0.787 Sum_probs=24.7
Q ss_pred Ccccccccccc-ccccCCCCCCCCCcCCC
Q 002165 734 PGEAPLCVYFI-NGSCNRGTGCPFSHSLQ 761 (957)
Q Consensus 734 ~~~~~~C~~f~-~G~C~~G~~C~f~H~~~ 761 (957)
+.++.+|+-|. .|.|.+|.+|+++|+.+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 35789999999 59999999999999964
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.40 E-value=0.19 Score=49.20 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHH
Q 002165 31 LREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 31 ~Q~~il~~l~~~--~~vII~a~TGSGKTt~lp~~ 62 (957)
..++++..+..+ +.++|.||+|+|||+.+-.+
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 344455555433 67999999999999866443
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.40 E-value=0.0041 Score=60.33 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
.++.+++.||+|+|||+.+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 688999999999999986544
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.30 E-value=0.095 Score=56.59 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=25.6
Q ss_pred cceEEEEcccccc-------cccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 137 KYKVIILDEVHER-------SVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 137 ~~~~VIIDEaHER-------~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
..++|+|||+|.- ....+.+..+++.+...+.++.+|+.+.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 3469999999932 12344455555555555556766666554
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.28 E-value=0.075 Score=58.95 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHcCC---eEEEEcCCCCcHHHHHHHHH
Q 002165 33 EKIVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 33 ~~il~~l~~~~---~vII~a~TGSGKTt~lp~~l 63 (957)
+.+...+..++ .+++.||.|+|||+.+-.+.
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34445555554 48999999999998765544
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.19 E-value=0.19 Score=54.82 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
-+++...+..++.++|.|+.|+|||+.+-.++.+.
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455556667899999999999999887776654
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.09 E-value=0.082 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..++|.||+|+|||+.+-.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999998665443
No 151
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.028 Score=69.40 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHh
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
.+.+.|.+++..+..+..++|.||.|||||+.+...+. .....+|+++.|+..|+..+.+++..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998888999999999999976655443 32446899999999999999999875
No 152
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.02 E-value=0.038 Score=68.16 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHh
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAK 90 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~Prrlaa~~va~rva~ 90 (957)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+. .....+|+++.|+..|+..+.+++..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 46899999999998889999999999999976655443 22446899999999999999998865
No 153
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.86 E-value=0.11 Score=59.16 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=71.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.+++++|++|+||||.+..+. ...+.+. ++-..+.|.++......++...+.++ +. ... .
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~--~~~----~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YG--EPN----N----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----EC--CTT----C-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----ee--ccc----c-----
Confidence 478999999999998765543 3444433 33445667777666666666544321 11 000 0
Q ss_pred EcHHHHHH-HHHccCCCcCcceEEEEccccccc---ccccHHHHHHHHHHhcCCCceEEEecccC--ChHHHHHHHh
Q 002165 119 KTAGVLLD-EMRDRGLNALKYKVIILDEVHERS---VESDLVLVCVKQLLLKKNDLRVVLMSATA--DITKYRDYFR 189 (957)
Q Consensus 119 ~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHER~---~~~d~ll~~lk~l~~~~~~lklIlmSATl--d~~~~~~~f~ 189 (957)
..|..+.. .+..- ...++++||||++- |. .+..+...+.+......++.-+++++|+. ++....+.|.
T Consensus 162 ~dp~~i~~~al~~a--~~~~~DvvIIDTaG-r~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 QNPIEIAKKGVDIF--VKNKMDIIIVDTAG-RHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp SCHHHHHHHHHHHT--TTTTCSEEEEEECC-CSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HhcCCCEEEEECCC-CccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 01333322 22221 12379999999998 43 34444444433333346777788899985 4444555555
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.81 E-value=0.12 Score=55.86 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH--h--cCCCcEEEe-ccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL--A--ENMEPILCT-QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll--e--~~~~~Iivt-~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
+++++++|++|+||||.+..+.. . .+.+..++. -+.+.++......++...+..+- +.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~--------------- 167 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VC--------------- 167 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BC---------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ec---------------
Confidence 56899999999999987765532 1 333323332 34444444333344443332210 00
Q ss_pred EEEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-cCCCceEEEecccCChHHHHHHHhh
Q 002165 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFRD 190 (957)
Q Consensus 117 vv~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-~~~~lklIlmSATld~~~~~~~f~~ 190 (957)
..++.+...+.. +.++++||||.+- +.....-++.-+..++. ..++-.+++++||.+...+.++...
T Consensus 168 --~~~~~l~~al~~----~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~ 235 (296)
T 2px0_A 168 --YTKEEFQQAKEL----FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKR 235 (296)
T ss_dssp --SSHHHHHHHHHH----GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTT
T ss_pred --CCHHHHHHHHHH----hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHH
Confidence 123333333321 2478999999775 44333333333333332 2344557888888776666665543
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.71 E-value=0.09 Score=57.68 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=22.2
Q ss_pred HHHHHHHHH-HHHHcCccccCCCCCCCccCHHHHHH
Q 002165 450 PEVVGDALD-LLDHKRALQKISPRGRYEPTFYGRLL 484 (957)
Q Consensus 450 ~~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~~ 484 (957)
...+.+-++ .|.+.|.|.. .+.|+ .+|+.|..-
T Consensus 293 ~~tl~~~l~~~l~~~gli~~-~~~g~-~~t~~~~~~ 326 (338)
T 3pfi_A 293 ENTIEDVIEPYLLANGYIER-TAKGR-IASAKSYSA 326 (338)
T ss_dssp HHHHHHTTHHHHHHTTSEEE-ETTEE-EECHHHHHH
T ss_pred HHHHHHHHhHHHHHcCceec-CCCcc-cccHHHHHH
Confidence 455666666 8888898876 44564 588887643
No 156
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.71 E-value=0.0055 Score=52.16 Aligned_cols=44 Identities=32% Similarity=0.736 Sum_probs=35.1
Q ss_pred ccccccccccccCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 002165 737 APLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (957)
Q Consensus 737 ~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~~~H~~~~ 790 (957)
...|+|+. .|++ ..|.|.|+ ....|+|+ -.|.+ ..|.|.|+.+.
T Consensus 31 ~~~Cr~g~--~C~~-~~C~f~HP---~~~~Crf~---~~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 31 HIMCREGA--NCTR-IDCLFGHP---INEDCRFG---VNCKN-IYCLFRHPPGR 74 (80)
Confidence 45799984 6998 67999996 24679988 68999 46999998643
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.68 E-value=0.069 Score=59.50 Aligned_cols=24 Identities=17% Similarity=0.085 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCcccc
Q 002165 445 LDPPYPEVVGDALDLLDHKRALQK 468 (957)
Q Consensus 445 l~pP~~~~i~~al~~L~~lgal~~ 468 (957)
.+|.+...+.++++.|...|.|..
T Consensus 315 ~~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 315 QKPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 356677889999999999999976
No 158
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.56 E-value=0.14 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+++.||+|+|||+.+-.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999865443
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.56 E-value=0.16 Score=57.92 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=71.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH---HHhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQF---LLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~---lle~~~~~-Iivt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
.+++++|++|+||||.+... +...+.+. ++..-|.|.+|....+.++...+.++ |.. . ..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~~-~-----~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FGN-P-----QE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----ECC-T-----TC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----Eec-C-----CC-----
Confidence 47899999999999876544 33444443 34445777777766666666554332 110 0 00
Q ss_pred EcHHHHH-HHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEecccC--ChHHHHHHHh
Q 002165 119 KTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFR 189 (957)
Q Consensus 119 ~T~g~Ll-~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSATl--d~~~~~~~f~ 189 (957)
..|.-++ +.+..- ...++++||||.+= |....+-+..-++.+. ...++.-+++++||. +.......|.
T Consensus 165 ~dp~~i~~~al~~a--~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 165 KDAIKLAKEGVDYF--KSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp CCHHHHHHHHHHHH--HHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 1233332 222211 01258999999996 4433333433343332 335777888999986 3334445554
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.15 Score=55.20 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=21.0
Q ss_pred HHHHHHHHcCC--eEEEEcCCCCcHHHHHHHH
Q 002165 33 EKIVEKVLENR--VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 33 ~~il~~l~~~~--~vII~a~TGSGKTt~lp~~ 62 (957)
..+...+..++ .+++.||+|+|||+.+-.+
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 34444555554 6999999999999755433
No 161
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.55 E-value=0.12 Score=56.72 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=23.0
Q ss_pred hHHHHHHHHH----HHcCC---eEEEEcCCCCcHHHHHHHH
Q 002165 29 MSLREKIVEK----VLENR---VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 29 ~~~Q~~il~~----l~~~~---~vII~a~TGSGKTt~lp~~ 62 (957)
+|+|++++.. +.+++ .+++.||.|+|||+.+-.+
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 4555555444 44554 4899999999999755443
No 162
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.50 E-value=0.098 Score=57.60 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHHHcCCe--EEEEcCCCCcHHHHHHHH
Q 002165 34 KIVEKVLENRV--TLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 34 ~il~~l~~~~~--vII~a~TGSGKTt~lp~~ 62 (957)
.+-..+..++. +++.||.|+||||.+-.+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 33344566665 999999999999866443
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.48 E-value=0.036 Score=56.75 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=27.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
..+...+++|+-||||||.+.+.+... ...++++.+|.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 457789999999999999776665432 23467777773
No 164
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.45 E-value=0.16 Score=55.61 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=24.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEE
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAENMEPILC 73 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iiv 73 (957)
..+.++|.|+.|+|||+.+-.+..+.....+++
T Consensus 29 ~~~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~ 61 (357)
T 2fna_A 29 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 61 (357)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 337999999999999998877766544333333
No 165
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.41 E-value=0.078 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+..++|.||+|+|||+.+ +.+..
T Consensus 27 ~~~~~vll~G~~GtGKt~la-~~i~~ 51 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA-SRLHY 51 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH-HHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH-HHHHH
Confidence 45678999999999999755 44443
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.36 E-value=0.12 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+++.||+|+|||+.+-.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998654443
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.36 E-value=0.14 Score=55.54 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..++|.||+|+|||+.+-.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 68999999999999755443
No 168
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.32 E-value=0.042 Score=55.42 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEecc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~P 76 (957)
.++..++.|+.||||||.+.+.+... ...+++++-|
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 46788999999999998888876532 2245666656
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.31 E-value=0.2 Score=53.09 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+++.||+|+|||+.+-.+..+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999865444433
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.28 E-value=0.21 Score=57.21 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..+++.||+|+|||+.+-.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57999999999999865433
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.15 E-value=0.05 Score=61.27 Aligned_cols=22 Identities=14% Similarity=-0.090 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHcCcccc
Q 002165 447 PPYPEVVGDALDLLDHKRALQK 468 (957)
Q Consensus 447 pP~~~~i~~al~~L~~lgal~~ 468 (957)
+.+...+..+++.|...|.|..
T Consensus 349 ~~~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 349 PRGYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEe
Confidence 4456778888999999999876
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.79 E-value=0.24 Score=53.03 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+++.||+|+|||+.+-.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 578999999999999865443
No 173
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.74 E-value=0.23 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+.+++.||+|+|||+.+-.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3579999999999998664443
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.62 E-value=0.2 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+.+++.||+|+|||+.+-.+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999866544433
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.53 E-value=0.24 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
+.+++.||+|+|||+.+-.+.-+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999866444333
No 176
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.48 E-value=0.21 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
..+++|+.|||||+.....+.+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999876555444
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.45 E-value=0.24 Score=53.88 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=21.8
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
+..+|||||+|. ....+....+++.+.....+.++|+.+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 789999999993 321333333333333333455666633
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.42 E-value=0.16 Score=57.05 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+++.||+|+|||+.+-.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 468999999999999865443
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.16 E-value=0.34 Score=56.67 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+.+++.||+|+|||+.+-.+..+.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999987665554444
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.05 E-value=0.24 Score=53.80 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL---AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iiv--t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~I 116 (957)
++++.++|++|+||||.+..+.. ..+ ++|++ .-++|.++....+.+.+..+..+ . ... +.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~------~-~~~---s~---- 168 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEG-KSVVLAAADTFRAAAIEQLKIWGERVGATV------I-SHS---EG---- 168 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEE------E-CCS---TT----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcC-CEEEEEccccccHHHHHHHHHHHHHcCCcE------E-ecC---Cc----
Confidence 34788999999999987665532 233 33433 24555555433333334333221 0 000 00
Q ss_pred EEEcHHHH-HHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHh-------cCCCceEEEecccC
Q 002165 117 VFKTAGVL-LDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATA 179 (957)
Q Consensus 117 vv~T~g~L-l~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~-------~~~~lklIlmSATl 179 (957)
..|..+ .+.+... ...++++|||||+- +....+-++..++.+.. ..++--++++.|+.
T Consensus 169 --~~~~~v~~~al~~a--~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 169 --ADPAAVAFDAVAHA--LARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp --CCHHHHHHHHHHHH--HHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred --cCHHHHHHHHHHHH--HhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 012222 1122211 11278999999997 54444444444433322 13454567778874
No 181
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.91 E-value=0.68 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
++.+++.||+|+|||+.+-.+.-+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46799999999999986654444433
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.85 E-value=0.31 Score=53.61 Aligned_cols=40 Identities=15% Similarity=0.416 Sum_probs=26.9
Q ss_pred cceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEeccc
Q 002165 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (957)
Q Consensus 137 ~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSAT 178 (957)
+..+|||||+|. ++.+....+++.+....++..+|+.|-.
T Consensus 134 ~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 134 RYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 678999999994 6666666666666554455555555544
No 183
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.84 E-value=0.11 Score=56.96 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred HHHHHHHHcC--CeEEEEcCCCCcHHHHHHH
Q 002165 33 EKIVEKVLEN--RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 33 ~~il~~l~~~--~~vII~a~TGSGKTt~lp~ 61 (957)
+.+...+..+ ..+++.||+|+|||+.+-.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 3444555555 5699999999999976543
No 184
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.82 E-value=0.12 Score=56.03 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+..++|.||||+|||+.+ ..+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA-r~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA-RALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH-HHHHH
T ss_pred CCCCcEEEECCCCchHHHHH-HHHHH
Confidence 34678999999999999754 44443
No 185
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.73 E-value=0.38 Score=59.04 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.9
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
.+++.||||+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999643
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.66 E-value=0.26 Score=53.15 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCCcHHHHHHHH
Q 002165 32 REKIVEKVLENR--VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 32 Q~~il~~l~~~~--~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+...+..++ .+++.||+|+|||+.+-.+
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 334445555543 4999999999999755433
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.52 E-value=0.28 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+.+++.||+|+|||+.+-.+..+.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999986655444433
No 188
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.38 E-value=0.18 Score=54.37 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.5
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 5999999999999755433
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.20 E-value=0.36 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
+.+++.||+|+|||+.+-.+.-+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999866444433
No 190
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.10 E-value=0.55 Score=50.87 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=27.8
Q ss_pred HHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEec
Q 002165 124 LLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (957)
Q Consensus 124 Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmS 176 (957)
+.+.+...+. ..++.+||||||| + +..+-.-.++|.+-.-.+...+|+.+
T Consensus 70 li~~~~~~p~-~~~~kvviIdead-~-lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPE-LYTRKYVIVHDCE-R-MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCS-SSSSEEEEETTGG-G-BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHhhccc-cCCceEEEeccHH-H-hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4444443332 2479999999999 3 33444455565554333444555443
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.76 E-value=0.16 Score=58.30 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=19.0
Q ss_pred HHHHHcCC--eEEEEcCCCCcHHHHHH
Q 002165 36 VEKVLENR--VTLIVGETGCGKSSQVP 60 (957)
Q Consensus 36 l~~l~~~~--~vII~a~TGSGKTt~lp 60 (957)
...+..++ .+++.||+|+|||+.+-
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 35555665 59999999999998553
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.45 E-value=0.047 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.934 Sum_probs=15.6
Q ss_pred cccccccccccCCCCCCCCCcCC
Q 002165 738 PLCVYFINGSCNRGTGCPFSHSL 760 (957)
Q Consensus 738 ~~C~~f~~G~C~~G~~C~f~H~~ 760 (957)
.+|-||.+|.|++|+.|+|.|..
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred eEcCccccCCCCCCCCCCccCCC
Confidence 45777777777777777777764
No 193
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.43 E-value=0.21 Score=53.86 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..+++.||+|+|||+.+-.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47999999999999755433
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.11 E-value=0.46 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+++.||+|+|||+.+-...
T Consensus 50 ~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999998654433
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=0.51 Score=53.00 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 183 rGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCEEEESCSSSSHHHHH
T ss_pred CceEEeCCCCCCHHHHH
Confidence 68999999999999643
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.03 E-value=0.43 Score=55.34 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..++|.||+|+|||+.+-.+
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 57999999999999865443
No 197
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.89 E-value=0.8 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..+++.||+|+|||+.+-....+.+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999975544433333
No 198
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=90.85 E-value=1.3 Score=48.18 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc
Q 002165 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (957)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni 336 (957)
..++.+++..+.. .+.+||||+...+..+-+.+++. ..++....+.|.....+++. .+.. .|.+.|..
T Consensus 111 f~~L~~LL~~l~~----~~~kVLIfsq~t~~LDilE~~l~--~~~~~y~RlDG~~~~~~~k~-----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 111 FSVLRDLINLVQE----YETETAIVCRPGRTMDLLEALLL--GNKVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHHHHHHHHHHTT----SCEEEEEEECSTHHHHHHHHHHT--TSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHHHHHHHHHHHh----CCCEEEEEECChhHHHHHHHHHh--cCCCceEeCCCCchhhhhhc-----ccCCceEEEEECC
Confidence 3444455555533 24699999999999999988888 46788889998855433221 1233 66666776
Q ss_pred cccCcc-----CCCeeEEEeCCcceeeeecCCCCccccceeecCHHhHHHhcCCCC--CCCCCeEEEeechh
Q 002165 337 AESSVT-----IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG--RTCDGQVYRLVTKS 401 (957)
Q Consensus 337 ae~GId-----Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAG--R~~~G~~~~L~s~~ 401 (957)
..-|++ .-+.+.||- ||+..+...- --+++.|+-|.| +.++=.+|||++..
T Consensus 180 g~~gin~~~~nl~~aD~VI~--------~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLIC--------LDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEE--------CSTTCCTTSH------HHHHHHCCC---------CCEEEEEETT
T ss_pred CCCCcCcccccCCCCCEEEE--------ECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 666675 457777886 8877665431 013344555553 34566799998854
No 199
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.64 E-value=1.4 Score=52.60 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 33 ~~il~~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+-..+..+..+++.||+|+||||.+-.+.
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 4444556788999999999999998664443
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.27 E-value=0.23 Score=50.71 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 27 Pi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
|-+--+..+++.+..+..+.|.||.||||||.+-...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 3344567889999999999999999999998765443
No 201
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.87 E-value=0.28 Score=63.65 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH---hcC-----CCcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN-----MEPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ll---e~~-----~~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
...+++-|.+++..- +++++|.|..|||||+.+..-+. ..+ ..+|+|+.+++.+|..+..|+...++
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 356789999998863 78999999999999977655433 232 24799999999999999999877544
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.60 E-value=0.64 Score=53.04 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 244 rGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SEEEECSCTTSSHHHHH
T ss_pred CceEeeCCCCCcHHHHH
Confidence 68999999999999643
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.53 E-value=0.94 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+.+++.||+|+|||+.+-.+..+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 679999999999998665444443
No 204
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.49 E-value=0.58 Score=52.09 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~ 61 (957)
...+++.||+|+|||+.+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999975533
No 205
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.10 E-value=0.33 Score=58.68 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHhc-C--CCcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-N--MEPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle~-~--~~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
+++.|.+++.. .+..++|.|..|||||+.+..- ++.. + ...|+++..++-+|..+.+|+...++
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 57889999875 3678999999999999666543 3333 3 34788888888899999999987654
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.68 Score=52.61 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 216 rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeeEEECcCCCCHHHHH
Confidence 67999999999999744
No 207
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.81 E-value=0.24 Score=49.09 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|+||+||||||.+-...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999775544
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.81 E-value=0.85 Score=51.88 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 68999999999999754
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.75 E-value=1 Score=51.07 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.6
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999744
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.51 E-value=0.25 Score=54.99 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.1
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..+..++|+|||||||||.+-..+-.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568899999999999999988766543
No 211
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=87.96 E-value=0.55 Score=57.30 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH---HHh-cCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeE
Q 002165 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLA-ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (957)
Q Consensus 28 i~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~---lle-~~~--~~Iivt~Prrlaa~~va~rva~e~~~~lg~~Vg 101 (957)
+.+.|.+++.. .+..++|.|..|||||+.+..- ++. .+. ..|+++..++-||..+.+|+...++..
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~------ 83 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA------ 83 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG------
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc------
Confidence 67889998876 3568899999999999655433 333 232 478888888889999999988754321
Q ss_pred EeeecccccCCCCcEEEEcHHHHHHH-HHccCCCc-CcceEEEEcccc
Q 002165 102 YHIGHSKHLSERSKIVFKTAGVLLDE-MRDRGLNA-LKYKVIILDEVH 147 (957)
Q Consensus 102 y~v~~~~~~~~~t~Ivv~T~g~Ll~~-l~~~~l~l-~~~~~VIIDEaH 147 (957)
...+.|+|-..+... +....... ..-+.-|+|+.+
T Consensus 84 -----------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 -----------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp -----------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred -----------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 123578886554433 33211111 123356788776
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.94 E-value=1.4 Score=49.83 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+-+++.||+|+|||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 67999999999999743
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.63 E-value=0.39 Score=54.43 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 25 SLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 25 ~LPi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
+|-+..-+..++..+. .+..++|+|||||||||.+-.++-
T Consensus 148 ~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp GSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444455556666554 345789999999999998766543
No 214
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.57 E-value=0.19 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+..+.|+|||||||||.+-..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHH
Confidence 5577899999999999998775543
No 215
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.36 E-value=0.3 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|+||+||||||.+-..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999775543
No 216
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.33 E-value=0.41 Score=55.78 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.4
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..+.+++|+|||||||||.+-..+
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 45688899999999999999875543
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.30 E-value=1.9 Score=49.68 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEe
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL--AENMEPILCT 74 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt 74 (957)
+.++.|.|++||||||.+-.+.. ....+.|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45789999999999987765532 2233456553
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.29 E-value=1.3 Score=54.29 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.5
Q ss_pred eEEEEcCCCCcHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVP 60 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp 60 (957)
.+++.||||+|||+..-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997543
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.18 E-value=1 Score=49.21 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEe--ccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL--AENMEPILCT--QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt--~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
+.++.+.||+||||||.+-.... ....+.|.+. .+.+..+....+.++...+.. +. ......
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~------~v-~q~~~~------- 194 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK------VI-KHSYGA------- 194 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE------EE-CCCTTC-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce------EE-eccccC-------
Confidence 56899999999999987765432 2222333332 333444444444444443321 11 111000
Q ss_pred EEcHHH-HHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 118 FKTAGV-LLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 118 v~T~g~-Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
.|.. ..+.+.... ..+++++++|.+--...+......+........++..++++.|+..
T Consensus 195 --~p~~~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 195 --DPAAVAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp --CHHHHHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred --CHHHHHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 1221 111111100 1257789999987222333333333222223357778889988864
No 220
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=86.99 E-value=0.14 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q 002165 765 PACKFFYSLQGCRNGDSCIFSHDL 788 (957)
Q Consensus 765 ~~C~~f~~~g~C~~g~~C~~~H~~ 788 (957)
..|-|| .+|.|++|+.|+|.|.+
T Consensus 71 ~~C~ff-akG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFF-AKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHH-HTTCCSCGGGCSSBBSC
T ss_pred eEcCcc-ccCCCCCCCCCCccCCC
Confidence 479999 88999999999999987
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.99 E-value=0.29 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||+||||||++-..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHH
Confidence 36789999999999999976544
No 222
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.93 E-value=0.29 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=21.4
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..++.+.|+|||||||||.+-..+
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHh
Confidence 35688999999999999999765543
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.76 E-value=0.37 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|+||+||||||++-..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 56789999999999999765543
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.18 E-value=0.33 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=19.4
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..++.+.|.||+||||||.+-..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999999977544
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.10 E-value=0.98 Score=55.33 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
+-+++.||.|+|||+.+-.
T Consensus 239 ~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999975533
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.01 E-value=0.43 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|+||+|+||||++-.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 67899999999999999775544
No 227
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.95 E-value=1 Score=56.02 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=14.1
Q ss_pred eEEEEcCCCCcHHHHH
Q 002165 44 VTLIVGETGCGKSSQV 59 (957)
Q Consensus 44 ~vII~a~TGSGKTt~l 59 (957)
.+++.||||+|||+..
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999644
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.91 E-value=0.41 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.|+||+||||||.+-..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999775543
No 229
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.33 E-value=0.45 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
++.++|.||+||||||.+-.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999765443
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.17 E-value=0.4 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+..++|.|++||||||++-.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 346788999999999999976443
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.04 E-value=0.38 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+..++|.|+.||||||.+-...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4467889999999999999765543
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.03 E-value=0.35 Score=47.46 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
.+..+.+.||.||||||.+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 567899999999999998765
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.40 E-value=0.69 Score=46.39 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
+..++.++|+|++||||||+.-...-.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346789999999999999976554433
No 234
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.24 E-value=0.41 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..++|+|||||||||.+-..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999998775543
No 235
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.94 E-value=0.67 Score=45.08 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=21.4
Q ss_pred HHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHH
Q 002165 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 33 ~~il~~l~~--~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++++.+.. .+.++|.||+|+|||+.+-.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence 344444433 4689999999999998665443
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.43 E-value=4.1 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
+.+++.||+|+|||+.+-..
T Consensus 65 ~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999865443
No 237
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.36 E-value=0.5 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+..++|+|||||||||.+-..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467789999999999998776554
No 238
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.24 E-value=0.6 Score=47.94 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAENM 68 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~~~ 68 (957)
.+.++++|.||+||||+||.-...-..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 34578999999999999998776655543
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.05 E-value=0.68 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=19.9
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..++.++|+||.||||||.+-..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 35678899999999999999776544
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.54 E-value=0.72 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++.++|+|++||||||+.-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 346788999999999999966443
No 241
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.44 E-value=0.68 Score=50.20 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~ 61 (957)
.+.++|+||||||||+..-.
T Consensus 3 ~~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHH
Confidence 45789999999999985433
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.41 E-value=1.3 Score=54.76 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
++.+++.||+||||||.+-.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 468999999999999865443
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.28 E-value=3.4 Score=51.25 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=20.0
Q ss_pred HHHHHHHHcC--CeEEEEcCCCCcHHHHHHH
Q 002165 33 EKIVEKVLEN--RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 33 ~~il~~l~~~--~~vII~a~TGSGKTt~lp~ 61 (957)
.++++.+..+ .++++.||+|+|||+.+-.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 3444444433 4799999999999975543
No 244
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.07 E-value=7.4 Score=41.64 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEEe--ccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL--AENMEPILCT--QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iivt--~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
++++.++|++|+||||.+..... ....++|.+. -+++.++......+....+..+ +. ... .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~---~~~-----~---- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE---VMD-----G---- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE---CCT-----T----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE---cCC-----C----
Confidence 45788889999999976554432 2222344332 3444443322222333322211 00 000 0
Q ss_pred EEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccCC
Q 002165 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (957)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATld 180 (957)
..|..+++...... ...++++|||||.=--..+......+.+......++.-++++.|+..
T Consensus 163 -~~p~~l~~~~l~~~-~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 -ESPESIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp -CCHHHHHHHHHHHH-HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred -CCHHHHHHHHHHHH-HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 13434433322210 01378999999994123332223333222222245555666777643
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.92 E-value=0.99 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+.++++|++||||||+.-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999998665543
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.83 E-value=0.81 Score=44.04 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..++|+|++||||||+.-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999977655
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.70 E-value=0.79 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++|.|+.||||||+.-...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999765543
No 248
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.43 E-value=0.86 Score=49.58 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEecc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQP 76 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~P 76 (957)
++++|+|+.||||||.+-.++-.....++.|+.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 4789999999999998876664444457777776
No 249
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.32 E-value=0.7 Score=44.85 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++|+|+.||||||+.-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 568999999999999966443
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.11 E-value=0.86 Score=47.00 Aligned_cols=25 Identities=36% Similarity=0.613 Sum_probs=21.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..+..+.|.||+||||||.+-.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4578899999999999999877665
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.11 E-value=0.74 Score=50.42 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~l 59 (957)
++.++|+||||||||+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 358999999999999744
No 252
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.11 E-value=0.85 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAENM 68 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~~ 68 (957)
++++.||+||||+||.....-..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5789999999999998777665554
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.85 E-value=0.99 Score=45.11 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+-+||+||.|+||||++-..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999765443
No 254
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.82 E-value=1.1 Score=52.56 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCcHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~ 61 (957)
+..+++.||+|+||||.+-.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 255
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.63 E-value=5.6 Score=46.04 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEec-cHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEEE
Q 002165 44 VTLIVGETGCGKSSQVPQFLL---AENMEPILCTQ-PRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~-Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv~ 119 (957)
+++++|.+|+||||.+-.+.. ..+.+..++.. |.|.++....+..+...+..+ ++.. ...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~------~~~------- 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSY------TEM------- 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECC------CCS-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---EccC------CCC-------
Confidence 688899999999987766553 33444333332 444444333333333333221 1100 000
Q ss_pred cH-HHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 120 TA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 120 T~-g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
.| +++.+.+..- ...+++++|||-+=-...+.++...+.+......++.-++++.|+.
T Consensus 167 dp~~i~~~al~~~--~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 DPVIIASEGVEKF--KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp CHHHHHHHHHHHH--HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred CHHHHHHHHHHHH--HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 12 2222222210 0137899999998622233333333222211235777788888875
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.48 E-value=0.66 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=15.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||+||||||.+-.+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999876443
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.27 E-value=0.79 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|.||||+|||+....++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998665543
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.24 E-value=0.78 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46789999999999999976443
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.15 E-value=7.3 Score=44.04 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=55.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH--hcCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL--AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll--e~~~~~Iiv--t~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
+++.++|++|+||||.+..... .....+|++ .-+.+.++....+.++...+..+ +... . .
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v-----~~~~-~-----~----- 162 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-----LEVM-D-----G----- 162 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-----EECC-T-----T-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE-----EecC-C-----C-----
Confidence 4688899999999976655432 222233333 34555555433333333333221 1100 0 0
Q ss_pred EcHHHHHH-HHHccCCCcCcceEEEEccccccc-ccccHHHHHHHHHHhcCCCceEEEecccC
Q 002165 119 KTAGVLLD-EMRDRGLNALKYKVIILDEVHERS-VESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (957)
Q Consensus 119 ~T~g~Ll~-~l~~~~l~l~~~~~VIIDEaHER~-~~~d~ll~~lk~l~~~~~~lklIlmSATl 179 (957)
..|.-+++ .+..- ...+|++||||=+= |. .+......+.+......++.-++++.|+.
T Consensus 163 ~~p~~i~~~~l~~~--~~~~~DvVIIDTaG-~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ESPESIRRRVEEKA--RLEARDLILVDTAG-RLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp CCHHHHHHHHHHHH--HHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHHH--HHCCCCEEEEcCCC-cccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 13433322 22210 01278999999765 32 22222222222222225665677777763
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.11 E-value=1.2 Score=44.80 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=25.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEEe
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPILCT 74 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iivt 74 (957)
..+..++|.|++|+||||.+-+++...+.+.+++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 35789999999999999988887763333334443
No 261
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.94 E-value=1.1 Score=45.87 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
....++|.|++||||||+.-.+.-..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999998765544433
No 262
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.76 E-value=1.1 Score=46.86 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|+|+|||||||..-...
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999998654443
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.55 E-value=1.1 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..++|.|+.||||||++-.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999976544
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.19 E-value=0.87 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
.+..+.|.||+||||||.+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346889999999999986633
No 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.06 E-value=3.6 Score=50.27 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp 60 (957)
..++++.||+|+|||+.+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4689999999999997553
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.98 E-value=2.3 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
..++++|+.||||||+.-...-+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999977655433
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.94 E-value=1.4 Score=42.50 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|.|+.||||||+.-.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999765543
No 268
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.81 E-value=1.1 Score=48.39 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
+.++|+||||||||+..-.
T Consensus 11 ~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 4688999999999985433
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.78 E-value=1.2 Score=45.69 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=21.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+..++|.|++|+||||.+-+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999887776553
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.71 E-value=0.83 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..+++.|+.||||||+.-.+.-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999987665433
No 271
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.70 E-value=3.8 Score=42.46 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+.+++.||+|+||||.+-...-..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999998775544433
No 272
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.60 E-value=0.97 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
..+..+.|.||+||||||.+-.++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999998877754
No 273
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.51 E-value=1.3 Score=44.00 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=22.0
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 38 ~l~~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.+.....++|.|+.||||||+.-.+.-..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345567899999999999997655443333
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.43 E-value=1.9 Score=41.93 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++++|+.||||||..-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 467999999999999965443
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.35 E-value=1.1 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
..++++|.|+.||||||+.-.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45789999999999999765544
No 276
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.31 E-value=1.2 Score=45.19 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
+..+..++|.||+||||||.+-+++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999988776653
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.24 E-value=1.5 Score=43.36 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+..+..++|.|+.||||||+.-.+.-..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999997765543333
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.09 E-value=0.99 Score=46.89 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||.||||||.+-..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976543
No 279
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.01 E-value=3 Score=44.31 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
...+++.||+|+|||+.+-.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999765443
No 280
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.89 E-value=1.2 Score=46.44 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
...++|.|+.||||||+.-.+.-..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999998866654443
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.71 E-value=3.8 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
+-+++.||.|+|||+..-....+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46899999999999644333333
No 282
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.63 E-value=1.4 Score=45.32 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=21.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..++|.|++|+|||+...+++.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999888887654
No 283
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.63 E-value=1.7 Score=43.75 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=22.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH---hcCCCcEEEecc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQP 76 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll---e~~~~~Iivt~P 76 (957)
+...++|.+.+|.||||...-..+ .++. +|+++|-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEe
Confidence 345888999999999976544433 3343 5666643
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=77.54 E-value=1.1 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..+..+.|.||.||||||.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3678899999999999997644
No 285
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=77.26 E-value=1.5 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.++|.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998766544444
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.24 E-value=1.2 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..+++.|+.||||||+.-...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 368999999999999775544
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.10 E-value=1.1 Score=47.76 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976543
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.07 E-value=1.6 Score=42.23 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.+.||.||||||.+-.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999876444
No 289
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.06 E-value=1.3 Score=44.03 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=23.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc-CCCcEEEecc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE-NMEPILCTQP 76 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~-~~~~Iivt~P 76 (957)
.+..++|.|+.||||||+.-.+.-.. +...+.+..|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 45689999999999999876544332 2333444444
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.06 E-value=1.6 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.++|+|+.||||||+.-.+.-+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998766554444
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=76.98 E-value=1.2 Score=43.45 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++|+|+.||||||+.-..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 568999999999999976544
No 292
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.85 E-value=1.1 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||.||||||.+-..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976543
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.74 E-value=1.1 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..++|.|+.||||||.+-...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 568899999999999775553
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.70 E-value=1 Score=48.72 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=23.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHhcCCCcEEE
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLAENMEPILC 73 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle~~~~~Iiv 73 (957)
..++.+.|+||+||||||.+-..+--. .+.|+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~ 156 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLS 156 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEEC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEE
Confidence 478899999999999998775554322 345543
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.52 E-value=1.4 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll 64 (957)
...++|.|+.||||||+.-.+.-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999997755443
No 296
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.52 E-value=1.2 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||.||||||.+-..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999977544
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=76.51 E-value=1.2 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+.|.|++||||||.+-.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999976443
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.45 E-value=2.5 Score=56.50 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHHc------CCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 36 VEKVLE------NRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 36 l~~l~~------~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
++.++. ++++++.||+|+|||+...+++.+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 555555 7899999999999998887777654
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=76.37 E-value=1.5 Score=43.37 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+.|.||.||||||.+-...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999775543
No 300
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.35 E-value=3.8 Score=43.98 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH---hcCCCcEE-EeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL---AENMEPIL-CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll---e~~~~~Ii-vt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Ivv 118 (957)
++++++|++|+||||.+..+.. ..+.+..+ -.-++|.++....+.++...+..+- ... ..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~-------~~~----~~----- 162 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY-------GEP----GE----- 162 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE-------CCT----TC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE-------ecC----CC-----
Confidence 4688899999999987655432 33333222 2344554444333333333332210 000 00
Q ss_pred EcHHHHHHHHHccCCCcCcceEEEEcccccccc--cccHHHHHHHHH-HhcCCCceEEEecccC
Q 002165 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSV--ESDLVLVCVKQL-LLKKNDLRVVLMSATA 179 (957)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~--~~d~ll~~lk~l-~~~~~~lklIlmSATl 179 (957)
..|..++...... +...+|++||||=+= +.- ..+.+..-++.+ ....++.-++++.|+.
T Consensus 163 ~~p~~~~~~~l~~-~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 KDVVGIAKRGVEK-FLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp CCHHHHHHHHHHH-HHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHH-HHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1344443322211 001378999999986 333 333343333322 2235666777777774
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.17 E-value=1.6 Score=42.96 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+..+++.|+.||||||+.-...-..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999997765543333
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=76.03 E-value=1.2 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||.||||||.+-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999977543
No 303
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.85 E-value=1.2 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..|..+.|.||.||||||.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999997644
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.80 E-value=1.5 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..++|+|+.||||||+.-.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999976443
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=75.78 E-value=1.6 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+.|.|+.||||||.+-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 467899999999999877554
No 306
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.69 E-value=1.3 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976443
No 307
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.65 E-value=12 Score=40.41 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
+++.++|++|+||||.+...
T Consensus 106 ~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999766544
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.63 E-value=2 Score=41.46 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAENM 68 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~~ 68 (957)
++++|.|+.||||||+.-.+.-..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 78999999999999966544333343
No 309
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.62 E-value=1.6 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+..++|.||+|+||||.+-+++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999988887764
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.61 E-value=1.3 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..|+.+.|.||.||||||.+-..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 347889999999999999976443
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=75.57 E-value=1.8 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..++|+|+.||||||+.-.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999765443
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=75.56 E-value=1.1 Score=44.19 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.+.|+|++||||||.+-..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765543
No 313
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.53 E-value=1.3 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46789999999999999976544
No 314
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.49 E-value=1.3 Score=46.09 Aligned_cols=23 Identities=17% Similarity=0.547 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999976443
No 315
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.43 E-value=1.1 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|+||+||||||.+-..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHH
Confidence 46789999999999999977443
No 316
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.23 E-value=3.2 Score=44.91 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
...+...+..+..+++.||+|+|||+.+-.+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 3455556677889999999999999765443
No 317
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=75.21 E-value=1.2 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999977554
No 318
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.00 E-value=2.3 Score=41.98 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+++.|+.||||||+.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876543
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.91 E-value=1.5 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..+..++|.|+.||||||..-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3567899999999999986533
No 320
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.89 E-value=1.4 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976443
No 321
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=74.55 E-value=1.4 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..++.+.|.||.||||||.+-..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHH
Confidence 46789999999999999976443
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.43 E-value=1.7 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++++|++|+||||.+.....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999987655543
No 323
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.40 E-value=1.4 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999976443
No 324
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.40 E-value=1.8 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
..+.|+|+.||||||.+...+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988766553
No 325
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.33 E-value=1.8 Score=47.03 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.6
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+.++|+|||||||||..
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999844
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.32 E-value=1.4 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..|..+.|.||.||||||.+-..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 346789999999999999976443
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=74.23 E-value=1.7 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
...+.|.|++||||||+.-.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999765544
No 328
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=74.18 E-value=2.4 Score=42.46 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHc-----CCeEEEEcCCCCcHHHHHHHH
Q 002165 33 EKIVEKVLE-----NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 33 ~~il~~l~~-----~~~vII~a~TGSGKTt~lp~~ 62 (957)
+++++.+.. +..+.|.|+.||||||.+-.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHH
Confidence 345555553 357899999999999866443
No 329
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.10 E-value=1.8 Score=47.41 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
..++|+|||||||||..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 47899999999999844
No 330
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.08 E-value=3.1 Score=50.92 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCC--CCCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccc-cccCccCCCeeEEE
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI-AESSVTIPKVAYVI 350 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~--~~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTni-ae~GIdIp~V~~VI 350 (957)
+.+++|.+|++.-+++.++.+... ..++.+..+||+++..++..+......+. +|||+|.- +...+.+.++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 358999999998888777666532 23578999999999999888888877776 99999963 34457788888877
No 331
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.01 E-value=1.7 Score=45.97 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
+..+..++|.|++||||||.+-+++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999998877764
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=74.00 E-value=1.7 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=21.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
+..+..++|.|++|+||||.+-++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999988776654
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.89 E-value=1.8 Score=42.27 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..++|+||+||||||.+-.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 378999999999998765543
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.80 E-value=1.5 Score=46.55 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+..+.|.||.||||||.+-..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 347789999999999999977543
No 335
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=73.75 E-value=1.6 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++.+.||+||||||.+-...
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4578899999999998776553
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=73.74 E-value=1.8 Score=43.01 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|.|+.||||||+.-...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 57899999999999775544
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.73 E-value=2.1 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.++|.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998766554444
No 338
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.67 E-value=1.5 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..+..+.|.||.||||||.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 4678999999999999997643
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.63 E-value=1.7 Score=42.64 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.6
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|.|+.||||||+.-...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999775543
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=73.57 E-value=1.5 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..|..+.|.||.||||||.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 4678999999999999997644
No 341
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.57 E-value=1.9 Score=43.57 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 29 ~~~Q~~il~~l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+.+.+.. .+..+..+++.|+.||||||+.-..
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHHHH
Confidence 34444443 2456778999999999999876543
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=73.54 E-value=1.3 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+.|.|+.||||||++-..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999977543
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.53 E-value=1.6 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 36788999999999999976543
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.48 E-value=1.6 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
.+..++|.|+.||||||+.-...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999997765543
No 345
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.42 E-value=2 Score=42.38 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
..++|+|+.||||||.+...+-
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999998766553
No 346
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.41 E-value=1.7 Score=42.57 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..++++|+.||||||+.-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4668899999999999865443
No 347
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=73.37 E-value=1.6 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|..+.|.||.||||||.+-..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999976544
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.36 E-value=1.8 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++.|.||+||||||.+-...
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 5689999999999998776653
No 349
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=73.34 E-value=2.1 Score=48.54 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=27.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFA 80 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Prrla 80 (957)
.+.+++|.|+||||||+.+...+... ....++|+-|....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 45789999999999997764443321 22467777776544
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.17 E-value=1.7 Score=43.60 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+.|+|++||||||+.-.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999966443
No 351
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.07 E-value=4.6 Score=44.43 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
....+++.||+|+|||+..-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999985433
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.00 E-value=2.6 Score=42.05 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|.|+.||||||+.-.+.-..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999997655543334
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=72.94 E-value=2.2 Score=43.30 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+..+++.|+.||||||+.-.+.-..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999998766544333
No 354
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=72.79 E-value=2 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
....++|.|+.||||||++-......+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999998766554334
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.43 E-value=1.2 Score=44.83 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.++|.|+.||||||++-...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999876543
No 356
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.40 E-value=2.4 Score=47.39 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=25.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc--CCCcEEEeccH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPR 77 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~--~~~~Iivt~Pr 77 (957)
.+.+++|.|+||||||+.+-..+... ...+|++.-|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56789999999999998765554332 22356666664
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.24 E-value=2.2 Score=40.71 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
...+|.||+|||||+.+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47899999999999876443
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.06 E-value=2 Score=42.95 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..++|+|+.||||||+.-.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999976544
No 359
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.00 E-value=2.7 Score=48.70 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHH
Q 002165 32 REKIVEKVLENRVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 32 Q~~il~~l~~~~~vII~a~TGSGKTt~lp 60 (957)
...++.++..+..+++.||+|+|||+.+-
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 34566667788999999999999997543
No 360
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.82 E-value=2.4 Score=42.17 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|.|+.||||||+.-.+.-..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999998766554433
No 361
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.69 E-value=1.8 Score=48.48 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=14.5
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
..++|+||||||||+..
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 46899999999999754
No 362
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.67 E-value=2.3 Score=46.41 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHH-HHHHcCccccCCCCCCCccCHHHHHHHh
Q 002165 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGRLLAS 486 (957)
Q Consensus 451 ~~i~~al~-~L~~lgal~~~~~~g~~~lT~lG~~~a~ 486 (957)
..+.+-++ .|..+|.|+. .++|+ .+|+.|..--.
T Consensus 291 ~t~~~~~~~~l~~~g~i~~-~~~gr-~~~~~~~~~~~ 325 (334)
T 1in4_A 291 DTLSEVYEPYLLQAGFLAR-TPRGR-IVTEKAYKHLK 325 (334)
T ss_dssp HHHHHHTHHHHHHTTSEEE-ETTEE-EECHHHHHHTT
T ss_pred chHHHHHHHHHHHcCCeec-ccccH-HhhHHHHHHhC
Confidence 44555555 7888998887 56676 47877765433
No 363
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=71.67 E-value=6.9 Score=38.74 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=43.1
Q ss_pred CCCCchHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHH---HHhcCCCcEEEeccHHHHHHHHHH
Q 002165 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAK 86 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l~--~~~~vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~Prrlaa~~va~ 86 (957)
+.+|-.+-|..++..+. ..+..+|.|.-|++|+.....- +.++..+.|.++.|...++..+++
T Consensus 31 ~~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 31 KSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp GCCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSC
T ss_pred CccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHh
Confidence 34555667788888774 4568999999999999663333 334444578888887776665544
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=71.58 E-value=2.1 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++|.|+.||||||+.-.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999765443
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.56 E-value=3.2 Score=45.18 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.4
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~ 61 (957)
.+-|.|++||||||.+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999987643
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=71.53 E-value=1.9 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+++.|+.||||||+.-..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3568999999999999876554
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.48 E-value=2.5 Score=42.97 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|.|+.||||||+.-...-..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999998766554433
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=71.27 E-value=2.2 Score=42.74 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..++|+|+.||||||+.-.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999775543
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.98 E-value=2.6 Score=41.08 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAENM 68 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~~~ 68 (957)
....++|.|+.||||||+.-.+.-..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3467999999999999977554433343
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.90 E-value=2.1 Score=41.94 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|.|+.||||||+.-.+.-..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999997655443333
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.53 E-value=2.7 Score=42.56 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+..+++.|+.||||||+.-.+.-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999998765544434
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=70.52 E-value=2 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..+.|.|+.||||||..-...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999665443
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=70.28 E-value=2.2 Score=43.93 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+..+++.|+.||||||++-...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46689999999999999876554
No 374
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=70.15 E-value=2 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.|+.+.|.||.||||||.+-..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 5678999999999999976543
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.05 E-value=3.3 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
...++++|+.||||||+.-..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999876543
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=70.00 E-value=3.1 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
..++|+|+.||||||+.-.+.-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999996654433334
No 377
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.88 E-value=2.1 Score=42.78 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.2
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~ 61 (957)
.+.|+|+.||||||+.-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 688999999999996543
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.88 E-value=3.1 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
++.++|.|+.||||||+.-.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999765443
No 379
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=69.79 E-value=6.7 Score=47.08 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=50.1
Q ss_pred CCCCchHHHHHHHHHH----HcCC-eEEEEcCCCCcHHHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC
Q 002165 24 SSLPVMSLREKIVEKV----LENR-VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN 93 (957)
Q Consensus 24 ~~LPi~~~Q~~il~~l----~~~~-~vII~a~TGSGKTt~lp~~lle~~~~~Iivt~Prrlaa~~va~rva~e~~ 93 (957)
..++.+..|.+.+..+ ..+. ..++.|-||||||..+...+.... +.++++.|....|.+++..+...++
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~~-~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVN-KPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHC-CCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHHcC
Confidence 3456667777666654 3443 467899999999988877665543 4677788888888888888887754
No 380
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.66 E-value=2.8 Score=42.99 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
...+++.|+.||||||+.-.+.-..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999998766554433
No 381
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=69.57 E-value=3.2 Score=39.78 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.++|.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999997655433334
No 382
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=69.34 E-value=2.1 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCL 50 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHH
Confidence 46789999999999999976544
No 383
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.23 E-value=4.2 Score=45.47 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHhcccCCc-eEEEEccccc----cCccCCCeeEE
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE----SSVTIPKVAYV 349 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lhs~l~~~er~~i~~~f~~~r-kVlVaTniae----~GIdIp~V~~V 349 (957)
++.+||.+|+++-+.++++.+.... .++.+..+||+.+..++....+....+. +|+|+|.-.- .-+...++.+|
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEE
Confidence 4689999999999988888776533 3678999999999987776666666664 9999996321 11455577776
Q ss_pred E
Q 002165 350 I 350 (957)
Q Consensus 350 I 350 (957)
|
T Consensus 144 V 144 (414)
T 3oiy_A 144 F 144 (414)
T ss_dssp E
T ss_pred E
Confidence 6
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.18 E-value=2.5 Score=41.42 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.8
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+++.|+.||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999976544
No 385
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=69.01 E-value=2.2 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+.|.||.||||||.+-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 778999999999999976443
No 386
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=68.91 E-value=3.9 Score=40.06 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.++|.|++|+|||+.+-.++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999988766543
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=68.88 E-value=2.2 Score=44.39 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..+.|.||.||||||.+-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 67899999999999977544
No 388
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.72 E-value=2.3 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
+.++.+.|++||||||.+-...
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4578999999999998776553
No 389
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.70 E-value=2.5 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
.+++.|+.||||||+.-.+.-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999998766544333
No 390
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=68.31 E-value=2.3 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHH
Confidence 46789999999999999977544
No 391
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=68.23 E-value=4.6 Score=41.23 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..+++.|+.||||||++-...-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999988665443
No 392
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=68.07 E-value=3.4 Score=46.62 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=17.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+.|.|++|+||||.+-...
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 89999999999999875543
No 393
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=68.04 E-value=2.4 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHH
Confidence 46789999999999999977544
No 394
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=67.84 E-value=3 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
..+++.|+.||||||+.-...-
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999997655443
No 395
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=67.70 E-value=2.6 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
.+..+.|.|++||||||.+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 456889999999999987643
No 396
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.38 E-value=13 Score=42.10 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=55.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---Hhc-CCCcEE-EeccHHHHHHHHHHHHHhhcCCccCCeeEEeeecccccCCCCcEE
Q 002165 43 RVTLIVGETGCGKSSQVPQFL---LAE-NMEPIL-CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l---le~-~~~~Ii-vt~Prrlaa~~va~rva~e~~~~lg~~Vgy~v~~~~~~~~~t~Iv 117 (957)
++++++|++|+||||...... ... +.+..+ -.-|.+.++......++...+..+-. ... .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~------~~~-----~---- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP------SDV-----G---- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC------CCS-----S----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe------CCC-----C----
Confidence 378889999999997665543 344 443322 23344544444333333333322110 000 0
Q ss_pred EEcHHHHHHHHHccCCCcCcceEEEEcccccccccccHHHHHHHHHH-hcCCCceEEEeccc
Q 002165 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSAT 178 (957)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~VIIDEaHER~~~~d~ll~~lk~l~-~~~~~lklIlmSAT 178 (957)
.+|..+++..... +...+|++||||=+= |.-..+.+..-+..+. ...++.-++++.|+
T Consensus 166 -~dp~~i~~~~l~~-~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 -QKPVDIVNAALKE-AKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp -SCHHHHHHHHHHH-HHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred -CCHHHHHHHHHHH-HHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 1344443322211 001278999999975 3322223333333332 22455555556666
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.32 E-value=4.1 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
+.++|.||+|+||||.+-.+.-..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 358999999999998765544433
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.32 E-value=2.8 Score=46.51 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.0
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.++|+|||||||||.+-..
T Consensus 25 ~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6789999999999877443
No 399
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.31 E-value=2.5 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHH
Confidence 46788999999999999977554
No 400
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.29 E-value=3.9 Score=44.35 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.+..++|.|++|+|||+...+++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45799999999999999888887753
No 401
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=67.23 E-value=2.3 Score=45.10 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=16.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
++.|.||+|+||||.+=...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999775544
No 402
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=67.21 E-value=2.2 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+-|.||.||||||.+-.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 35668899999999999976543
No 403
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=67.18 E-value=3 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~ 61 (957)
++++|.|+.||||||+.-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3689999999999986543
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=67.15 E-value=2.5 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.637 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHH
Confidence 46788999999999999977554
No 405
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=67.00 E-value=4.5 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+.+..+++.|+.||||||++-..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHH
Confidence 35678999999999999987554
No 406
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=66.66 E-value=4.7 Score=43.13 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp 60 (957)
..+.|+|++||||||..-
T Consensus 32 ~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999998653
No 407
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=66.65 E-value=2.3 Score=42.35 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
.+..+++.|++|+||||.+-.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~ 45 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNT 45 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456799999999999997643
No 408
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=66.42 E-value=3.5 Score=44.59 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
+..+..++|.|++|+|||+...++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345679999999999999888877654
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.29 E-value=3 Score=41.67 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.8
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ 62 (957)
.+.|.|+.||||||..-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999976444
No 410
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=66.23 E-value=3.5 Score=41.96 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+++.|+.|||||||+-..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987543
No 411
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=66.18 E-value=2.3 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHH
Confidence 46788999999999999977544
No 412
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.03 E-value=5.1 Score=43.89 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
+.+++.||+|+|||+.+-.+..+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999866554433
No 413
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=65.94 E-value=2.7 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.691 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHH
Confidence 36788999999999999977544
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=65.83 E-value=2.8 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHH
Confidence 46789999999999999977544
No 415
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.76 E-value=2.6 Score=45.77 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..++|.||+|+|||+...++..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999877776654
No 416
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=65.48 E-value=3 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
...+|+|+||+|||+.+-...
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999998765443
No 417
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.44 E-value=4 Score=43.21 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
+.+++.||.||||||.+-..
T Consensus 45 ~GvlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 34999999999999866443
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=65.20 E-value=3 Score=40.52 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
-.+++.|++|+|||+.+-.++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999988776643
No 419
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=64.90 E-value=3.3 Score=40.95 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..+.|+|++||||||+.-.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36889999999999966443
No 420
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=64.79 E-value=3 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.++.++|.||.||||||.+-+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999987654
No 421
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=64.65 E-value=10 Score=37.34 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHhcccCCceEEEEcc-----ccc-cCccCCCeeEE
Q 002165 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN-----IAE-SSVTIPKVAYV 349 (957)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lhs~l~~~er~~i~~~f~~~rkVlVaTn-----iae-~GIdIp~V~~V 349 (957)
+.++||.+|+++-+.+..+.+......+.+..++|+.+...+..... .+-.|+|+|. .+. ..+++.++++|
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 46899999999999988888876555578888999887654433222 2348999995 222 34566778777
Q ss_pred E
Q 002165 350 I 350 (957)
Q Consensus 350 I 350 (957)
|
T Consensus 149 V 149 (207)
T 2gxq_A 149 V 149 (207)
T ss_dssp E
T ss_pred E
Confidence 6
No 422
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.26 E-value=3.5 Score=41.63 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
..++|.|+.||||||+.-.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999976443
No 423
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=64.12 E-value=4 Score=44.34 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
....+++.||+|+|||+.+-.+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHH
Confidence 3457999999999999755433
No 424
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=64.08 E-value=3.2 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+..+.|.||.||||||.+-..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCV 74 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHH
Confidence 347889999999999999976444
No 425
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=63.97 E-value=3.9 Score=38.34 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999988776643
No 426
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=63.87 E-value=6.3 Score=48.07 Aligned_cols=42 Identities=24% Similarity=0.550 Sum_probs=30.3
Q ss_pred cCCCC--chHHHHHHHHHHH---cCCeEEEEcCCCCcHHH---HHHHHHH
Q 002165 23 FSSLP--VMSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLL 64 (957)
Q Consensus 23 r~~LP--i~~~Q~~il~~l~---~~~~vII~a~TGSGKTt---~lp~~ll 64 (957)
+..+| |+.+-+.+...+. .+|.+||+|+.|||||. .+.+++.
T Consensus 116 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla 165 (784)
T 2v26_A 116 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 165 (784)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHH
Confidence 45677 5666777777664 56789999999999993 3445554
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=63.80 E-value=4.1 Score=42.23 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+++.|+.||||||++-..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999987554
No 428
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.64 E-value=4.9 Score=39.75 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCcEEEecc
Q 002165 45 TLIVGETGCGKSSQVPQFLLAENMEPILCTQP 76 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~lle~~~~~Iivt~P 76 (957)
++|.|++|||||+..-++... +. +++++.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~-~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP-QVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS-SEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC-CeEEEec
Confidence 689999999999988877766 43 4444444
No 429
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=63.39 E-value=3.9 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+..+.|.||+||||||.+-..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHH
Confidence 347889999999999999977544
No 430
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=63.08 E-value=4.7 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..++|.|++|||||+...+++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999988888776
No 431
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=62.85 E-value=4.1 Score=38.14 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998766654
No 432
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=62.81 E-value=4.2 Score=43.75 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..++.+.+.|++|+||||.+=..+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999876655
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=62.77 E-value=4.3 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.++.++|.|+.||||||...+++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999888777654
No 434
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.76 E-value=3.6 Score=42.95 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
.+.+++.||+|+|||+.+-.+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 3568999999999998654443
No 435
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.76 E-value=4.1 Score=47.48 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=26.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH----hcCCCcEEEe
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCT 74 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ll----e~~~~~Iivt 74 (957)
+..+..+.|.||+||||||.+-++++ ..+.+.|.+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44678999999999999998888542 2233455554
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=62.75 E-value=3.6 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~ 62 (957)
.+..+.|.|+.||||||.+-.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3457889999999999976544
No 437
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=62.74 E-value=3.7 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
.++.+.|.||.||||||.+-+++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999888877654
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=62.73 E-value=2.4 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+.|.||.||||||.+-..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHH
Confidence 46789999999999999977554
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.51 E-value=4.3 Score=40.78 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
...+|.||+|||||+.+-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 57899999999999876543
No 440
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.27 E-value=4.4 Score=45.46 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..+.|.||.||||||.+-++++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5679999999999999998877654
No 441
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=62.10 E-value=4.4 Score=38.26 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999998876653
No 442
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=61.71 E-value=3.4 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVP 60 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp 60 (957)
..|+.+.|+||+||||||.+-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 467899999999999999763
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=61.48 E-value=3.9 Score=42.13 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=16.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..+..+++.|+.||||||++-..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999987554
No 444
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=60.95 E-value=4.7 Score=39.38 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999988776644
No 445
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=60.83 E-value=4.3 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..++|.||+||||||.+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999988777654
No 446
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=60.67 E-value=7.6 Score=38.84 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHH---HHhcCCCcEEEecc
Q 002165 45 TLIVGETGCGKSSQVPQF---LLAENMEPILCTQP 76 (957)
Q Consensus 45 vII~a~TGSGKTt~lp~~---lle~~~~~Iivt~P 76 (957)
+++-|.-|||||||+-.. +.+.+...+..-.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 578899999999987543 44445544444445
No 447
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=60.55 E-value=4.8 Score=38.52 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999988776643
No 448
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=60.28 E-value=4.2 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
++..++|.|.||||||+.+-.++
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHH
Confidence 45789999999999997665444
No 449
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=60.26 E-value=3.4 Score=45.14 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
....+|+||+|||||+.+-..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357799999999999876543
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.18 E-value=5 Score=37.63 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998766554
No 451
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.17 E-value=4.9 Score=37.89 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999988766543
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.05 E-value=2.5 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..|+.+.|+||+||||||.+-..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 346789999999999999977544
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=59.95 E-value=5.1 Score=37.86 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999988776543
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=59.92 E-value=4.9 Score=39.73 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.++|.|+.|+||||.+-.++-
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999998766654
No 455
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=59.87 E-value=3.6 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
+..|+.+.|.||+||||||.+-...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3478899999999999999775543
No 456
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.85 E-value=7.6 Score=44.86 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=24.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle~~ 67 (957)
+..+..++|.|++|+|||+...+++.+..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 44678999999999999998888877654
No 457
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=59.79 E-value=5.1 Score=37.65 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998766654
No 458
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.75 E-value=4.6 Score=43.61 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.+..++|.|++|+|||+...+++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999988888765
No 459
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=59.72 E-value=3.9 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|+.+.|.||+||||||.+-..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999977554
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.63 E-value=3.7 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~ 61 (957)
+...++|.|..||||||+.-.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456789999999999998744
No 461
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=59.62 E-value=5.1 Score=37.88 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999988776643
No 462
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=59.57 E-value=5 Score=39.45 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.++|.|+.|+||||.+-.+.-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999998766554
No 463
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=59.28 E-value=5.2 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
.++.++|.||.||||||.+-...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999765443
No 464
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.22 E-value=4.5 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=19.0
Q ss_pred HHHHHHH--cCCeEEEEcCCCCcHHHHH
Q 002165 34 KIVEKVL--ENRVTLIVGETGCGKSSQV 59 (957)
Q Consensus 34 ~il~~l~--~~~~vII~a~TGSGKTt~l 59 (957)
.++..+. ...++++.||+|+|||+.+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 3444443 3458999999999999754
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=59.13 E-value=4.2 Score=40.67 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.++|.|++|+|||+.+-.++-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999998766553
No 466
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=59.13 E-value=6 Score=42.45 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++.+.+.||.|+||||.+=..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHh
Confidence 446789999999999999976443
No 467
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.00 E-value=4.7 Score=42.88 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
..+++.|+.||||||+.-...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999765543
No 468
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=58.86 E-value=5.6 Score=45.39 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
+..+..++|.|++|+|||+.+.++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 446689999999999999888777654
No 469
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=58.82 E-value=4.9 Score=39.06 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+++.|++|+|||+.+-.++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999988776543
No 470
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=58.77 E-value=5.6 Score=39.90 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~lle 65 (957)
-.+++++|.+|+||||.+-.++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999988777655
No 471
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=58.76 E-value=4.1 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQ 61 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~ 61 (957)
..|+.+.|+||+||||||.+-.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~ 388 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNL 388 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999997643
No 472
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=58.72 E-value=7.6 Score=42.81 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~l 63 (957)
...++.+.+.|++|+||||.+-.++
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHh
Confidence 4578899999999999999875544
No 473
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=58.52 E-value=5.6 Score=37.60 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998866653
No 474
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=58.39 E-value=5 Score=39.16 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ll 64 (957)
-.++|.|++|+|||+.+-.++-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999998876653
No 475
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.35 E-value=3.6 Score=44.56 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~l 63 (957)
...+|+|++|||||+.+-.+.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 488999999999998765543
No 476
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=58.22 E-value=5.6 Score=37.93 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+++.|++|+|||+.+-.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999887765
No 477
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=58.09 E-value=5.6 Score=37.41 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999998766653
No 478
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=58.05 E-value=5.7 Score=37.93 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999988776543
No 479
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=57.69 E-value=5.9 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999988666543
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=57.66 E-value=4.9 Score=41.31 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..++|.|..||||||+.-..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 356899999999999977543
No 481
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=57.52 E-value=6.5 Score=37.57 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~ll 64 (957)
...+++.|++|+|||+.+-.++-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999998877654
No 482
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=57.47 E-value=4.3 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 002165 42 NRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 42 ~~~vII~a~TGSGKTt~lp~~l 63 (957)
++.+.|.|++||||||.+-...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 7789999999999999776543
No 483
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.38 E-value=6.2 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~lle 65 (957)
.++.++|.|++|+|||+...+++.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999888777654
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=57.34 E-value=8.6 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
+-+++-|.-|||||||+-..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L 22 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEV 22 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 56789999999999987543
No 485
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.15 E-value=5.7 Score=39.70 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle 65 (957)
..+++.|++|+|||+.+-.++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999988766543
No 486
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=56.96 E-value=5.6 Score=39.69 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 002165 43 RVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~ 62 (957)
.++.|+|..||||||..-.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999866443
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=56.78 E-value=5.7 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 002165 39 VLENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 39 l~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
+..+..+.|.||+||||||.+-..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L 158 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTL 158 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHH
Confidence 347889999999999999876443
No 488
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=56.77 E-value=6 Score=38.32 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+||||.+-.+.-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999998877653
No 489
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=56.63 E-value=6.2 Score=37.19 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998866654
No 490
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=56.59 E-value=8.8 Score=46.12 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=29.8
Q ss_pred cCCCCc--hHHHHHHHHHHH---cCCeEEEEcCCCCcHHH---HHHHHHHhc
Q 002165 23 FSSLPV--MSLREKIVEKVL---ENRVTLIVGETGCGKSS---QVPQFLLAE 66 (957)
Q Consensus 23 r~~LPi--~~~Q~~il~~l~---~~~~vII~a~TGSGKTt---~lp~~lle~ 66 (957)
+..+|. +.+-+.+...+. ++|.+||+|+.|||||. .+.+++...
T Consensus 70 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~ 121 (697)
T 1lkx_A 70 KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFV 121 (697)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhh
Confidence 344554 556666666654 56789999999999993 355555543
No 491
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=56.28 E-value=7.5 Score=40.12 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 002165 41 ENRVTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 41 ~~~~vII~a~TGSGKTt~lp~~l 63 (957)
....+.|.||+||||||..-...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999765544
No 492
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=56.17 E-value=6.2 Score=37.60 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~ll 64 (957)
.+++.|++|+|||+.+-.++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999998876653
No 493
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=56.05 E-value=6.4 Score=37.61 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 002165 44 VTLIVGETGCGKSSQVPQFLLA 65 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~lle 65 (957)
.+++.|++|+|||+.+-.++-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999987666543
No 494
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.95 E-value=9.6 Score=43.39 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=18.6
Q ss_pred HHHHHHcC----CeEEEEcCCCCcHHHHH
Q 002165 35 IVEKVLEN----RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 35 il~~l~~~----~~vII~a~TGSGKTt~l 59 (957)
+++.+..+ +.+++.||+|+|||+..
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 34455544 47999999999999754
No 495
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=55.90 E-value=46 Score=42.44 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=24.2
Q ss_pred HHHHHHHHHH----cCCeEEEEcCCCCcHHHHHHHHHH
Q 002165 31 LREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLL 64 (957)
Q Consensus 31 ~Q~~il~~l~----~~~~vII~a~TGSGKTt~lp~~ll 64 (957)
..+++.+.+. ..+.+.|.|+-|.||||...++..
T Consensus 132 ~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~ 169 (1249)
T 3sfz_A 132 LVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVR 169 (1249)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTC
T ss_pred HHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3455555553 235788999999999998866654
No 496
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=55.85 E-value=6.5 Score=37.19 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+++.|++|+|||+.+-.++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886664
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.76 E-value=5.6 Score=40.27 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.6
Q ss_pred CeEEEEcCCCCcHHHHH
Q 002165 43 RVTLIVGETGCGKSSQV 59 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~l 59 (957)
+.+++.||.|+|||+.+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36999999999999755
No 498
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=55.70 E-value=6.7 Score=39.50 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 002165 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (957)
Q Consensus 43 ~~vII~a~TGSGKTt~lp~~lle~ 66 (957)
..++|.|..|+||||.+-.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478899999999999988887653
No 499
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=55.63 E-value=4.3 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 002165 40 LENRVTLIVGETGCGKSSQVPQF 62 (957)
Q Consensus 40 ~~~~~vII~a~TGSGKTt~lp~~ 62 (957)
..|+.+.|.||+||||||.+-..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999977543
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=55.61 E-value=6.6 Score=37.30 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002165 44 VTLIVGETGCGKSSQVPQFL 63 (957)
Q Consensus 44 ~vII~a~TGSGKTt~lp~~l 63 (957)
.+++.|++|+|||+.+-.++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999999876654
Done!