BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002166
(957 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 1206 bits (3120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/966 (63%), Positives = 738/966 (76%), Gaps = 32/966 (3%)
Query: 7 YLGKEILGEVEIYP-----QQQGEGGEGEEKNKKVFDE-----IRISYFSEASERCPPLA 56
+ G LGE+EIYP QQQ + + +K ++ E IRIS+FS++ ERCPPLA
Sbjct: 10 FHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLA 69
Query: 57 VLHTITASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNE 115
+L TI++ G+CFK+E S S L L +SSC+R+NKTAVM LG EELHLVAMYS N +
Sbjct: 70 ILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIK 128
Query: 116 KQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175
PCFWAFSV G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+ R+I+
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188
Query: 176 EVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRP 235
E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248
Query: 236 LIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL 295
LIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308
Query: 296 EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDK 355
EMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+K
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368
Query: 356 DQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE 415
DQPRVHVVPAFAPYY+PQAEA A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427
Query: 416 DDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAV 475
+D +DIPSPPDVS+YLVSEDD + NG KDPLSFDGMAD EVERRLKEAI+AS+ + A
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPA- 486
Query: 476 ANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAVMPLANMQFPPA-TSLVKPLG 524
AN+DPR+ AP Q+ M A P Q P TS+ K
Sbjct: 487 ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAK--- 543
Query: 525 HVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQV 584
H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE FP R +Q
Sbjct: 544 HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQA 603
Query: 585 SVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTS 644
V SR WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + S
Sbjct: 604 PPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQS 663
Query: 645 DRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSS 703
DR HEN+R PKE+LRRD++LR N+ L D F GE+ ++SSS + D+DF R VS+
Sbjct: 664 DRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSA 723
Query: 704 TETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAA 763
TET + VL IA+KCG KVE++P+LV+ST+L+FS+EAW + +KIGEGIG++RREA +AA
Sbjct: 724 TETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAA 783
Query: 764 EGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPS 823
E SI++LA+ YM R D G H D + F+ NEN MG N+ QP A+DE+ S
Sbjct: 784 EASIQNLADGYM-RANGDPGPSHRDATPFT--NENISMGNANALNNQPFARDETALPVSS 840
Query: 824 KLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVL 883
+ DPRLEGS + GS++AL+ELC +EGL + FQ Q ++ V +DE++AQVEIDG+V+
Sbjct: 841 RPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVEIDGRVV 900
Query: 884 GKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRSLQGMPNKRLKPEFPRVLQRM 943
G+G+GSTWDEA+MQAAE+AL S+RSM GQ K QGSPRS GM NKRLKP+F R LQRM
Sbjct: 901 GEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRSFGGMSNKRLKPDFQRSLQRM 960
Query: 944 PPSGRY 949
P SGRY
Sbjct: 961 PSSGRY 966
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 627 bits (1618), Expect = e-179, Method: Compositional matrix adjust.
Identities = 372/782 (47%), Positives = 478/782 (61%), Gaps = 64/782 (8%)
Query: 2 YKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTI 61
+K+V Y G LGE+++ E N DEIRI + S A ERCPPLA+L TI
Sbjct: 6 HKSVVYHGDLRLGELDV--NHVSSSHEFRFPN----DEIRIHHLSPAGERCPPLAILQTI 59
Query: 62 TASGICFKMESKSSDNIQ-LHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPC 120
+ + K+ES + Q L LH+ C E KTAV+ LG EE+HLVAM S+ EK++PC
Sbjct: 60 ASFAVRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLG-DEEIHLVAMPSK--EKKFPC 116
Query: 121 FWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQ 180
FW FSV SGLY+SCL MLN RCL IVFDLDETLIVANTM+SFEDRIEAL IS E+DP
Sbjct: 117 FWCFSVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPV 176
Query: 181 RIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQ 240
RI GM AE+KRY DD+ +LKQY +ND +NG ++K Q E V SD + + RP+IRL
Sbjct: 177 RINGMSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLP 236
Query: 241 EKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300
EKN +LTRI P+IRDTSVLV+LRPAWE+LRSYLTA+ RKRFEVYVCTMAERDYALEMWRL
Sbjct: 237 EKNTVLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRL 296
Query: 301 LDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRV 360
LDPE++LI+ KEL DRIVCVK ++KSL +VF G CHPKMA+VIDDR+KVW+DKDQPRV
Sbjct: 297 LDPEAHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRV 356
Query: 361 HVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKD 420
HVV A+ PYYAPQAE +P LCVARN+ACNVRG FFKEFDE L+ I + YEDDV++
Sbjct: 357 HVVSAYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVEN 416
Query: 421 IPSPPDVSNYLVSEDDAATANG-IKDPLSFDGMADAEVERRLKEAIAASATISSAVANLD 479
+P PDVSNY+V ED +NG I P +GM EVERRL +A AA + A +N +
Sbjct: 417 LPPSPDVSNYVVIEDPGFASNGNINAPPINEGMCGGEVERRLNQAAAADHSTLPATSNAE 476
Query: 480 PRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAR 539
+ P + P Q AV+P AT+ H + SL +P R
Sbjct: 477 QK--------PET------PKPQIAVIPNNAST---ATAAALLPSH----KPSLLGAPRR 515
Query: 540 EEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVE 599
+ + R L+++ G+D R ++ P A+ MQ + S G W V+
Sbjct: 516 DGFTFSDGG-------RPLMMRPGVDIRNQNFNQPPILAKIPMQPPSSSMHSPGGWL-VD 567
Query: 600 EEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRP--HENQRMPKEA 657
+E P FP + +PS FP S P H + +E
Sbjct: 568 DENRP---------SFPGRPSGL--------YPSQFPHGTPGSAPVGPFAHPSHLRSEEV 610
Query: 658 LRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGR-DVSSTETPSGVLQDIAM 716
DD R N + Q+ G I + S+ R+ + G+ + + LQ+I
Sbjct: 611 AMDDDLKRQNPS---RQTTEGG-ISQNHLVSNGREHHTDGGKSNGGQSHLFVSALQEIGR 666
Query: 717 KCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYML 776
+CG+KVEFR + + ELQFS+E F GEKIG G+ +T+++A +QAAE +++ LA Y+
Sbjct: 667 RCGSKVEFRTVISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSLAEKYVA 726
Query: 777 RV 778
V
Sbjct: 727 HV 728
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 320 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVW 352
+ K+G+ ++LF C M +IDDR VW
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW 308
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
RLRP +D + K +E++V T R YA + LDPE L + + +L R C
Sbjct: 223 TRLRPHCKDFLEKIA----KLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHR-ILSRDEC 277
Query: 320 V----KSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAE 375
+ K+G+ ++LF C M +IDDR VW K P + V + Y P
Sbjct: 278 IDPFSKTGNLRNLF------PCGDSMVCIIDDREDVW--KFAPNLITVKKYV--YFPGTG 327
Query: 376 ANNAIPV---LCVARNIACNVRGGFFKEFDEGLLQRIPE 411
NA P R + + +GG ++ L R PE
Sbjct: 328 DVNAPPAARETQARRKVNHSSKGG--DALEQALSVRDPE 364
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 230 QALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMA 289
+ LV PL+ + + +L P +R V++RP L+ + A+ FE+++ TMA
Sbjct: 219 EELVLPLMYMNDDGSMLRP--PPVRKCWYYVKVRPG---LKEFF-AKVAPLFEMHIYTMA 272
Query: 290 ERDYALEMWRLLDPESNLINTKELLDRIVCVK---SGSRKSLFNVFQDGTCHPKMALVID 346
R YAL++ +++DP L DRI+ S + KSL +F M +VID
Sbjct: 273 TRAYALQIAKIVDPTGELFG-----DRILSRDENGSLTTKSLAKLF---PTDQSMVVVID 324
Query: 347 DRLKVWD 353
DR VW+
Sbjct: 325 DRGDVWN 331
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 281 FEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGS--RKSLFNVFQDGTC 337
+E+++ TM + YA E+ +++DP L DR++ SGS +KSL +F C
Sbjct: 237 YELHIYTMGTKAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLF---PC 288
Query: 338 HPKMALVIDDRLKVWD 353
M +VIDDR VWD
Sbjct: 289 DTSMVVVIDDRGDVWD 304
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP LR++L +R K FE+ + T +++ YA ++ +LDP N I + +
Sbjct: 101 VYVRLRP---HLRTFL-SRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHC 156
Query: 318 VCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLK 350
VCV K L + +D P +++D+ ++
Sbjct: 157 VCVFGNYVKDLTILGRD----PSKTMILDNAVQ 185
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 40.0 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 824 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDG 880
+L DP +E S L + ++L+EL TEGLGV + + + A + G
Sbjct: 157 RLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGV--PEYLVTETGPDHEKTFTAAARVGG 214
Query: 881 QVLGKGIGSTWDEAKMQAAEKALGSLRS 908
G G G + EA+ QAAE A ++RS
Sbjct: 215 VSYGTGTGRSKKEAEQQAAESAWRAIRS 242
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 836 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 891
+M S L+EL +G+GV + +++ P+ E ++V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGIGVLEYSILEEKGPA-----HNKEFVSRVSLNGQELGIGVGKSK 225
Query: 892 DEAKMQAAEKALGSLRSM 909
EA+ AA+ AL L+++
Sbjct: 226 KEAEQHAAQMALQKLKTI 243
>sp|A4IM67|RNC_GEOTN Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=rnc PE=3 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.18, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 836 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 891
+M S L+EL +G G + +++ P+ E A+V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGSGTLEYAILEEKGPA-----HNKEFVARVALNGQELGVGVGRSK 225
Query: 892 DEAKMQAAEKALGSLRS 908
EA+ AA+ AL +LR+
Sbjct: 226 KEAEQHAAQMALETLRA 242
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 824 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGV---VFQQQPPSSANSVQKDEVYAQVE 877
+L DP +E S L + ++L+EL TEGLGV + + P + A
Sbjct: 167 RLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFT-----AAAR 221
Query: 878 IDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908
+ G G G G + EA+ QAAE A S+R+
Sbjct: 222 VGGVSYGTGTGRSKKEAEQQAAESAWRSIRA 252
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFF---REFL-ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 379 VCVQGNYIKDL 389
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 836 LMGSVSALKELCMTEGLGV----VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 891
+M S L+EL +G G + +++ P+ E A+V ++GQ LG G+G +
Sbjct: 171 VMDFKSQLQELVQRDGSGTLEYAILEEKGPA-----HNKEFVARVALNGQELGIGVGRSK 225
Query: 892 DEAKMQAAEKALGSLRS 908
EA+ AA+ AL +LR+
Sbjct: 226 KEAEQHAAQMALETLRA 242
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 327 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 382
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 383 VCVQGNYIKDL 393
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
++ +LRP + S+L + F +Y+ TM +R+YA +M +LLDP+ DR+
Sbjct: 175 MMTKLRPF---VHSFLK-EASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFG-----DRV 225
Query: 318 VCVKSGS---RKSLFNVFQDGTCHPKMALVIDDRLKVW-DDKDQ----PRVHVVPA---- 365
+ G+ KSL V + L++DD W KD R H +
Sbjct: 226 ISRDDGTVRHEKSLDVVLGQESA----VLILDDTENAWPKHKDNLIVIERYHFFSSSCRQ 281
Query: 366 FAPYYAPQAE--ANNAIP--VLCVARNIACNVRGGFFKEFDEGLLQR 408
F Y +E ++ + P L + FF+ DEG+ R
Sbjct: 282 FDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNR 328
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP L+ + +
Sbjct: 318 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHC 373
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 374 VCVQGNYIKDL 384
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRI 317
V VRLRP + R +L R + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFF---REFL-ERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 318 VCVKSGSRKSL 328
VCV+ K L
Sbjct: 380 VCVQGNYIKDL 390
>sp|Q8CSB6|Y1287_STAES UPF0271 protein SE_1287 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1287 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.5, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 146 VFDLDETLI---VANTMRSFEDRIEALLRKISTEV--------DPQRIAGMQAEVKRYQD 194
VFD D LI +ANT+ E + L K+++EV D Q ++ + +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADRRYEDDGQLVSRKKTDATITNT 191
Query: 195 DKNI---LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 232
D+ I LK EN V++NGK+I ++++ + D AL
Sbjct: 192 DEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|Q5HNU6|Y1168_STAEQ UPF0271 protein SERP1168 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1168 PE=3 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 1.5, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 146 VFDLDETLI---VANTMRSFEDRIEALLRKISTEV--------DPQRIAGMQAEVKRYQD 194
VFD D LI +ANT+ E + L K+++EV D Q ++ + +
Sbjct: 134 VFDFDSNLIFVGLANTLLISEAELVGL--KVASEVFADRRYEDDGQLVSRKKTDATITNT 191
Query: 195 DKNI---LKQYAENDQVNENGKVIKVQSEVVPALSDSHQAL 232
D+ I LK EN V++NGK+I ++++ + D AL
Sbjct: 192 DEAIQQALKMVLENKVVSKNGKIIDLKADTICVHGDGKHAL 232
>sp|Q2YXI3|RNC_STAAB Ribonuclease 3 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=rnc PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|P66669|RNC_STAAW Ribonuclease 3 OS=Staphylococcus aureus (strain MW2) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A8Z3R9|RNC_STAAT Ribonuclease 3 OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=rnc PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q6G9Y0|RNC_STAAS Ribonuclease 3 OS=Staphylococcus aureus (strain MSSA476) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q6GHK2|RNC_STAAR Ribonuclease 3 OS=Staphylococcus aureus (strain MRSA252) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|P66668|RNC_STAAN Ribonuclease 3 OS=Staphylococcus aureus (strain N315) GN=rnc PE=1
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A6QGD3|RNC_STAAE Ribonuclease 3 OS=Staphylococcus aureus (strain Newman) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q5HGJ9|RNC_STAAC Ribonuclease 3 OS=Staphylococcus aureus (strain COL) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A5ISB8|RNC_STAA9 Ribonuclease 3 OS=Staphylococcus aureus (strain JH9) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q2FZ50|RNC_STAA8 Ribonuclease 3 OS=Staphylococcus aureus (strain NCTC 8325) GN=rnc
PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q2FHK5|RNC_STAA3 Ribonuclease 3 OS=Staphylococcus aureus (strain USA300) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|A6U152|RNC_STAA2 Ribonuclease 3 OS=Staphylococcus aureus (strain JH1) GN=rnc PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AAE + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQI 242
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 824 KLVDPRLEGSKKLMGSV---SALKELCMTEGLGV---VFQQQPPSSANSVQKDEVYAQVE 877
+L DP + + L + ++L+EL E LGV V ++ P + + A V
Sbjct: 146 RLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPDHQKTFR-----ATVR 200
Query: 878 IDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908
+ GQ G G G + EA+ QAAE A ++R+
Sbjct: 201 VAGQTYGSGEGRSKKEAEQQAAESAWKAIRA 231
>sp|Q3A4Q8|RNC_PELCD Ribonuclease 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnc PE=3 SV=1
Length = 232
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770
+S+EA F G IG+G GR+++ A++ AA+ ++++L
Sbjct: 196 YSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALEYL 230
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319
V+LRP + Y+ R K +E++V TM R YA + ++DP + DRI+
Sbjct: 96 VKLRPNLD----YMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFD-----DRII- 145
Query: 320 VKSGSRKSLFNVFQDGTCHPKMALVI-DDRLKVWD 353
+ ++ L H +VI DDR VWD
Sbjct: 146 TRDENQGVLVKRLSRLFPHDHRNIVILDDRPDVWD 180
>sp|B2G826|RNC_LACRJ Ribonuclease 3 OS=Lactobacillus reuteri (strain JCM 1112) GN=rnc
PE=3 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 871 EVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908
E V +G V+G+G GS+ A+MQAA++AL ++R+
Sbjct: 193 EFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNMRN 230
>sp|A5VKP2|RNC_LACRD Ribonuclease 3 OS=Lactobacillus reuteri (strain DSM 20016) GN=rnc
PE=3 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 871 EVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908
E V +G V+G+G GS+ A+MQAA++AL ++R+
Sbjct: 193 EFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNMRN 230
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 874 AQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906
AQV ++GQVLGKG G T +A+ AA+ A+ L
Sbjct: 194 AQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 876 VEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFP 914
VE++GQV +G G T +AK+ AAEKAL S F QFP
Sbjct: 113 VEVNGQVF-EGSGPTKKKAKLHAAEKALRS----FVQFP 146
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus
GN=Adarb1 PE=1 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 876 VEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFP 914
VE++GQV +G G T +AK+ AAEKAL S F QFP
Sbjct: 113 VEVNGQVF-EGSGPTKKKAKLHAAEKALRS----FVQFP 146
>sp|Q931T1|RNC_STAAM Ribonuclease 3 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=rnc PE=3 SV=1
Length = 243
Score = 33.5 bits (75), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 736 FSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773
F+ E GE I EG G+T++E++++AA+ + K L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQLKQI 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,006,544
Number of Sequences: 539616
Number of extensions: 15898924
Number of successful extensions: 45989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 45794
Number of HSP's gapped (non-prelim): 286
length of query: 957
length of database: 191,569,459
effective HSP length: 127
effective length of query: 830
effective length of database: 123,038,227
effective search space: 102121728410
effective search space used: 102121728410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)